Query lcl|Aclame:protein:vir:3528|NCBI_annot:P27|genbank:acc:NP_050988;genbank:gi:9633574;genbank:GeneID:1262321 Match_columns 160 No_of_seqs 23 out of 28 Neff 4.2 Searched_HMMs 1612 Date Fri Nov 29 20:44:58 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_27 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_27_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:3528 Length: 160 # 100.0 6E-82 3.7E-85 465.9 16.4 160 1-160 1-160 (160) 2 protein:vir:105380 Length: 160 100.0 3.5E-76 2.2E-79 434.2 16.1 160 1-160 1-160 (160) 3 protein:vir:176 Length: 160 # 100.0 3.8E-76 2.4E-79 434.0 16.1 160 1-160 1-160 (160) 4 protein:vir:105524 Length: 166 100.0 1E-75 6.5E-79 431.6 15.9 160 1-160 1-160 (166) 5 protein:vir:100918 Length: 166 100.0 4.2E-71 2.6E-74 406.4 15.7 158 2-160 1-162 (166) 6 protein:vir:9267 Length: 166 # 100.0 4.2E-71 2.6E-74 406.4 15.6 158 2-160 1-162 (166) 7 protein:vir:2108 Length: 166 # 100.0 1.5E-70 9.4E-74 403.4 15.7 158 2-160 1-162 (166) 8 protein:vir:108311 Length: 249 99.8 1.1E-22 7.1E-26 140.9 11.6 141 1-151 1-249 (249) 9 protein:vir:78741 Length: 197 55.8 0.47 0.00029 22.4 11.2 137 1-145 1-197 (197) 10 protein:vir:106985 Length: 276 43.3 0.53 0.00033 22.1 5.0 120 1-160 1-141 (276) 11 protein:vir:103760 Length: 207 29.2 1.7 0.001 19.3 12.0 143 1-160 1-205 (207) 12 protein:vir:103305 Length: 245 26.2 2 0.0012 19.0 12.2 147 1-149 13-245 (245) No 1 >protein:vir:3528 Length: 160 # NCBI annotation: P27 # Family: family:all:1693 # MgeID: mge:72 # MgeName: APSE-1 # Cross-refs: genbank:acc:NP_050988;genbank:gi:9633574;genbank:GeneID:1262321 Probab=100.00 E-value=6e-82 Score=465.86 Aligned_cols=160 Identities=100% Similarity=1.414 Sum_probs=159.8 Q ss_pred CCCccchHHHHHHHHHHhccCcccccCCCCHHHHHHHHHHHHHHHHhcccCcceecceecccCCCCCcccccCCCHHHHH Q lcl|Aclame:pro 1 MTKPLTKGEIVLFALRKAGIASEATNIDVEPQSFEEGINDLEDLMAELQITFGDLGYQFSAEEENPTSDDASGLPRKYKQ 80 (160) Q Consensus 1 ~~~~~Tk~d~V~~Alr~lgvas~at~~dvepq~~e~~i~~Le~MMaeW~a~gi~~Gy~fa~~~e~~~p~Dd~~lP~~~~~ 80 (160) |+|.+||||||++|||||||+||||||||||||||+|||+||+||+||++|||++||+||+++|+++|+|++|||++|++ T Consensus 1 m~~~~Tkgdiv~~Alrk~gvas~at~~DvePq~~e~gindLe~MMaeW~a~gi~lGy~Fa~~~e~p~pdD~~glp~~~~~ 80 (160) T protein:vir:35 1 MTKPLTKGEIVLFALRKAGIASEATNIDVEPQSFEEGINDLEDLMAELQITFGDLGYQFSAEEENPTSDDASGLPRKYKQ 80 (160) T ss_pred CCccchHHHHHHHHHHHhhccccccccCCCHHHHHHHHHHHHHHHHhhccCCceeeeeecccCCCCCcccccCCchhHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCccccccCceeeccCCcccCCCCCCCC Q lcl|Aclame:pro 81 VMGYQLMLRMLSDYGIEPTPRQEASAAAAYDALLTDTLSVPSIARRGDMPVGQGNNYTALGTASYYVERGFHAKNTDPVS 160 (160) Q Consensus 81 Av~~nLAvrIAp~yGieps~~vv~~A~~a~~~Ll~a~~~~p~~~~~ndmPvG~Gnr~~~~~~~~yy~~r~~~~~~~~~~~ 160 (160) ||+|||||||||+||+|++++++++|++||++||++++++|+++||||||+|+|||||+|+|+|||++|++|++++|||| T Consensus 81 aV~~~LAvria~dyG~~~s~~~~a~A~~ay~~Ll~a~~~~p~~~r~~~mP~GsGN~~~a~~g~ryy~~r~~~~~~~~p~~ 160 (160) T protein:vir:35 81 VMGYQLMLRMLSDYGIEPTPRQEASAAAAYDALLTDTLSVPSIARRGDMPVGQGNNYTALGTASYYVERGFHAKNTDPVS 160 (160) T ss_pred HHHHHHHHHHHHhhCCCcCHHHHHHHHHHHHHHHHHhhccccccccCCCCcccccccccCCcceeccCceeccCCCCcCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:105380 Length: 160 # NCBI annotation: gene 7 protein # Family: family:all:1693 # MgeID: mge:1556 # MgeName: Sf6 # Cross-refs: genbank:acc:NP_958183;genbank:gi:41057285;genbank:GeneID:2716627 Probab=100.00 E-value=3.5e-76 Score=434.25 Aligned_cols=160 Identities=58% Similarity=0.913 Sum_probs=159.6 Q ss_pred CCCccchHHHHHHHHHHhccCcccccCCCCHHHHHHHHHHHHHHHHhcccCcceecceecccCCCCCcccccCCCHHHHH Q lcl|Aclame:pro 1 MTKPLTKGEIVLFALRKAGIASEATNIDVEPQSFEEGINDLEDLMAELQITFGDLGYQFSAEEENPTSDDASGLPRKYKQ 80 (160) Q Consensus 1 ~~~~~Tk~d~V~~Alr~lgvas~at~~dvepq~~e~~i~~Le~MMaeW~a~gi~~Gy~fa~~~e~~~p~Dd~~lP~~~~~ 80 (160) |+|.+||||||++|||||||+||||++|||||++|+|||+||+||+||+++||++||+|++++|+++|+|++|||++|++ T Consensus 1 ~~~~~Tkgdiv~~Alrklgvas~at~~Dvepqs~~~gindLe~MMaeW~a~gi~lGy~Fa~~~e~p~pdD~~glp~~~~~ 80 (160) T protein:vir:10 1 MATVLTKGEIVLFALRKFAIASNASLTDVEPQSIEDGVNDLEDMMSEWMINPGDIGYAFATGDEQPLPDDESGLPRKYKH 80 (160) T ss_pred CCCchhHHHHHHHHHHHhcccccccccCCChHHHHHHHHHHHHHHHHhccCCcceeeeecccCCCCCccccccCChhHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCccccccCceeeccCCcccCCCCCCCC Q lcl|Aclame:pro 81 VMGYQLMLRMLSDYGIEPTPRQEASAAAAYDALLTDTLSVPSIARRGDMPVGQGNNYTALGTASYYVERGFHAKNTDPVS 160 (160) Q Consensus 81 Av~~nLAvrIAp~yGieps~~vv~~A~~a~~~Ll~a~~~~p~~~~~ndmPvG~Gnr~~~~~~~~yy~~r~~~~~~~~~~~ 160 (160) ||+|||||||||+||||++++++++|++||++||++++++|+++|+++||+|+|||+|+|+++||||+|+.++|+++|-. T Consensus 81 aV~~~LAvria~dygie~s~~~~s~A~~ay~~Ll~a~~~~p~~~~~~~mP~gsGn~~~~~~~~~yy~~~~~~~d~~~~~~ 160 (160) T protein:vir:10 81 AVGYQLLLRMLSDYSLEPTPQVLSNAQRSYDALMTDTLVVPSMRRRGDFPVGQGNKYDVFTSDRYYPGDLPLIDGDIPNA 160 (160) T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHhhcchhhccCCCCCCCCCcccccccccccCCCccccCCCCCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 No 3 >protein:vir:176 Length: 160 # NCBI annotation: DNA stabilization protein # Family: family:all:1693 # MgeID: mge:5 # MgeName: HK620 # Cross-refs: genbank:acc:NP_112081;genbank:gi:13559871;genbank:GeneID:920968 Probab=100.00 E-value=3.8e-76 Score=434.05 Aligned_cols=160 Identities=58% Similarity=0.916 Sum_probs=159.6 Q ss_pred CCCccchHHHHHHHHHHhccCcccccCCCCHHHHHHHHHHHHHHHHhcccCcceecceecccCCCCCcccccCCCHHHHH Q lcl|Aclame:pro 1 MTKPLTKGEIVLFALRKAGIASEATNIDVEPQSFEEGINDLEDLMAELQITFGDLGYQFSAEEENPTSDDASGLPRKYKQ 80 (160) Q Consensus 1 ~~~~~Tk~d~V~~Alr~lgvas~at~~dvepq~~e~~i~~Le~MMaeW~a~gi~~Gy~fa~~~e~~~p~Dd~~lP~~~~~ 80 (160) |+|.+||||||++|||||||+||||++|||||++|+|||+||+||+||+++||++||+|++++|+++|+|++|||++|++ T Consensus 1 ~~~~~Tkgdiv~~Alrklgvas~at~~Dvepqs~~~gindLe~MMaeW~a~gi~lGy~Fa~~~e~p~pdD~~glp~~~~~ 80 (160) T protein:vir:17 1 MATVLTKGEIVLFALRKFAIASNASLTDVEPQSIEDGVNDLEDMMSEWMINPGDIGYAFATGDEQPLPDDESGLPRKYKH 80 (160) T ss_pred CCCchhHHHHHHHHHHHhcccccccccCCChHHHHHHHHHHHHHHHHhccCCcceeeeecccCCCCCccccccCChhHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCccccccCceeeccCCcccCCCCCCCC Q lcl|Aclame:pro 81 VMGYQLMLRMLSDYGIEPTPRQEASAAAAYDALLTDTLSVPSIARRGDMPVGQGNNYTALGTASYYVERGFHAKNTDPVS 160 (160) Q Consensus 81 Av~~nLAvrIAp~yGieps~~vv~~A~~a~~~Ll~a~~~~p~~~~~ndmPvG~Gnr~~~~~~~~yy~~r~~~~~~~~~~~ 160 (160) ||+|||||||||+||||++++++++|++||++||++++++|+++|+++||+|+|||+|+|+++||||+|+.++|+++|-. T Consensus 81 aV~~~LAvria~dygie~s~~~~s~A~~ay~~Ll~a~~~~p~~~~~~~mP~gsgn~~~~~~~~~yy~~~~~~~d~~~~~~ 160 (160) T protein:vir:17 81 AVGYQLLLRMLSDYSLEPTPQVLSNAQRSYDALMTDTLVVPSIRRRGDFPVGQGNKYDVFTSDRYYPGDLPLIDGDIPNA 160 (160) T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHhhcchhhccCCCCCCCCCcccccccccccCCCccccCCCCCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 No 4 >protein:vir:105524 Length: 166 # NCBI annotation: phage DNA stabilization protein # Family: family:all:1693 # MgeID: mge:1463 # MgeName: phiSG1 # Cross-refs: genbank:acc:YP_516193;genbank:gi:89885996;genbank:GeneID:3964384 Probab=100.00 E-value=1e-75 Score=431.65 Aligned_cols=160 Identities=52% Similarity=0.864 Sum_probs=159.4 Q ss_pred CCCccchHHHHHHHHHHhccCcccccCCCCHHHHHHHHHHHHHHHHhcccCcceecceecccCCCCCcccccCCCHHHHH Q lcl|Aclame:pro 1 MTKPLTKGEIVLFALRKAGIASEATNIDVEPQSFEEGINDLEDLMAELQITFGDLGYQFSAEEENPTSDDASGLPRKYKQ 80 (160) Q Consensus 1 ~~~~~Tk~d~V~~Alr~lgvas~at~~dvepq~~e~~i~~Le~MMaeW~a~gi~~Gy~fa~~~e~~~p~Dd~~lP~~~~~ 80 (160) |+|.+||||||++|||||||+||||+|||||||+|+|||+||+||+||+++||++||+|++++|+++|+|++|||++|++ T Consensus 1 ~~~~~TkgeiV~~Alrklgv~s~at~~Dvepq~~~~gv~dLe~MMaeW~a~gi~lGy~Fa~~~e~p~pdD~~glp~~~~~ 80 (166) T protein:vir:10 1 MPKLLTKGDVVLFALRKCAVASNATLTDVEPQSVTDGLDDLEAMMAEWRARGIDIGYRFAQDEQTVSPDDPTGVLPLFTS 80 (166) T ss_pred CCCcchHHHHHHHHHHHhccCcchhhcCCCHHHHHHHHHHHHHHHHHhccCcceeeeeecccCCCCCccccccCchhHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCccccccCceeeccCCcccCCCCCCCC Q lcl|Aclame:pro 81 VMGYQLMLRMLSDYGIEPTPRQEASAAAAYDALLTDTLSVPSIARRGDMPVGQGNNYTALGTASYYVERGFHAKNTDPVS 160 (160) Q Consensus 81 Av~~nLAvrIAp~yGieps~~vv~~A~~a~~~Ll~a~~~~p~~~~~ndmPvG~Gnr~~~~~~~~yy~~r~~~~~~~~~~~ 160 (160) ||+|||||||||+|||||+++++++|+++|++||++..++|+++|+|+||+|+|||||+|+++|||++|..++|+++.|+ T Consensus 81 aV~~~LAvria~dygi~~s~~~~s~A~~ay~~Ll~a~~~~p~~~r~~dmP~GsGN~~~~~~~~~yy~~~~~~~dg~~~~~ 160 (166) T protein:vir:10 81 AVGYQLMLRVLADYGIAPTPRQEATAHTAYDALLTATLTVPSLKRRGDMPTGQGNQYDHFISGRYYPDKRENVNGDNAIT 160 (166) T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHhhcccccccCCCCcccCcccccccccccccCCccccCcccccC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 No 5 >protein:vir:100918 Length: 166 # NCBI annotation: Gp4 # Family: family:all:1693 # MgeID: mge:1509 # MgeName: ST104 # Cross-refs: genbank:acc:YP_006410;genbank:gi:46358702;genbank:GeneID:2777068 Probab=100.00 E-value=4.2e-71 Score=406.42 Aligned_cols=158 Identities=34% Similarity=0.467 Sum_probs=155.6 Q ss_pred CCccchHHHHHHHHHHhccCcccccCCCCHHHHHHHHHHHHHHHHhc--ccCcceecceecccCCCCCcccccCCCHHHH Q lcl|Aclame:pro 2 TKPLTKGEIVLFALRKAGIASEATNIDVEPQSFEEGINDLEDLMAEL--QITFGDLGYQFSAEEENPTSDDASGLPRKYK 79 (160) Q Consensus 2 ~~~~Tk~d~V~~Alr~lgvas~at~~dvepq~~e~~i~~Le~MMaeW--~a~gi~~Gy~fa~~~e~~~p~Dd~~lP~~~~ 79 (160) -|.+||||||++|||||||+||||++|||||++|+||++||+||+|| +++||++||+|++++|+|+|+|++|||++|+ T Consensus 1 ~~m~TkgdiVl~AlrklgVas~atltDvEpqs~~dgi~dLe~MMaeW~~~a~gI~lGY~fa~~~e~p~pdD~~glp~~a~ 80 (166) T protein:vir:10 1 MQIKTKGDLVRAALRKLGVASDATLTDVEPQSMQDAVDDLEAMMAEWYQDGKGIVTGYVFSDDDNPPSEGDDHGLRSSAI 80 (166) T ss_pred CccchHHHHHHHHHHHhccccccccccCChHHHHHHHHHHHHHHHHHhhcCCCceecceecccCCCCCCccccCCCHhHH Confidence 78999999999999999999999999999999999999999999999 9999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhcccccc--cCCCCCCCCccccccCceeeccCCcccCCCCC Q lcl|Aclame:pro 80 QVMGYQLMLRMLSDYGIEPTPRQEASAAAAYDALLTDTLSVPSIAR--RGDMPVGQGNNYTALGTASYYVERGFHAKNTD 157 (160) Q Consensus 80 ~Av~~nLAvrIAp~yGieps~~vv~~A~~a~~~Ll~a~~~~p~~~~--~ndmPvG~Gnr~~~~~~~~yy~~r~~~~~~~~ 157 (160) +||+|||||||||+|||||+++++++|+++|++||++++++|+.++ |||||+|+||+++.|++||||++++ |++++| T Consensus 81 ~av~~~LAvria~dygie~t~~v~s~A~~ay~aLl~~t~~a~~~~~~Y~~dmP~G~Gn~~~~~~~~~y~~~~~-~~~~~~ 159 (166) T protein:vir:10 81 SAVFHNLACRIAPDYALEATAKIIATAKYGKELLYKQTAIARAKRAPYPSRMPTGSGNSFANLNEWHYFPGEQ-NADSTT 159 (166) T ss_pred HHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCcCCCccchhccccccccccc-ccCCCC Confidence 9999999999999999999999999999999999999999999998 8899999999999999999999966 999999 Q ss_pred CCC Q lcl|Aclame:pro 158 PVS 160 (160) Q Consensus 158 ~~~ 160 (160) |-. T Consensus 160 p~~ 162 (166) T protein:vir:10 160 PHD 162 (166) T ss_pred Ccc Confidence 998 No 6 >protein:vir:9267 Length: 166 # NCBI annotation: 4 # Family: family:all:1693 # MgeID: mge:164 # MgeName: ST64T # Cross-refs: genbank:acc:NP_720331;genbank:gi:24371589;genbank:GeneID:955812 Probab=100.00 E-value=4.2e-71 Score=406.39 Aligned_cols=158 Identities=32% Similarity=0.450 Sum_probs=155.1 Q ss_pred CCccchHHHHHHHHHHhccCcccccCCCCHHHHHHHHHHHHHHHHhc--ccCcceecceecccCCCCCcccccCCCHHHH Q lcl|Aclame:pro 2 TKPLTKGEIVLFALRKAGIASEATNIDVEPQSFEEGINDLEDLMAEL--QITFGDLGYQFSAEEENPTSDDASGLPRKYK 79 (160) Q Consensus 2 ~~~~Tk~d~V~~Alr~lgvas~at~~dvepq~~e~~i~~Le~MMaeW--~a~gi~~Gy~fa~~~e~~~p~Dd~~lP~~~~ 79 (160) -|.+||||||++|||||||+||||++|||||++|+||++||+||+|| +++||++||+|++++|+|+|+|++|||++|+ T Consensus 1 ~~m~Tkgdiv~~AlrklgVas~atltDvEpqs~~dgi~dLe~MMaeW~~~a~gI~lGY~fa~~~e~p~pdD~~glp~~a~ 80 (166) T protein:vir:92 1 MQIKTKGDLARAALRKLGVASDATLTDIEPQSMQDAVDDLEAMMAEWYQDGKGIITGYIFSDDDNPPAEGDDHGLRSSAV 80 (166) T ss_pred CccchHHHHHHHHHHHhccccccccccCChHHHHHHHHHHHHHHHHHhhcCCCceeccccccccCCCCCccccCCCHhHH Confidence 78999999999999999999999999999999999999999999999 9999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhcccccc--cCCCCCCCCccccccCceeeccCCcccCCCCC Q lcl|Aclame:pro 80 QVMGYQLMLRMLSDYGIEPTPRQEASAAAAYDALLTDTLSVPSIAR--RGDMPVGQGNNYTALGTASYYVERGFHAKNTD 157 (160) Q Consensus 80 ~Av~~nLAvrIAp~yGieps~~vv~~A~~a~~~Ll~a~~~~p~~~~--~ndmPvG~Gnr~~~~~~~~yy~~r~~~~~~~~ 157 (160) +||+|||||||||+||+||+++++++|+++|++||++++++|+.++ |||||+|+||+++.|++||||++ ++|++++| T Consensus 81 ~av~~~LAvria~dygie~t~~v~s~A~~~y~aLl~~t~~a~~~r~~Y~~dmP~G~Gn~~~~~~~~~y~~~-~~~~~~t~ 159 (166) T protein:vir:92 81 SAVFHNLACRIAPDYALEATAKIIATAKYGKELLYKQTAIARAKRAPYPSRMPTGSGNSFANLNEWHYFPG-EQNADSTT 159 (166) T ss_pred HHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcCCCccchhccccccccc-cccCCCCC Confidence 9999999999999999999999999999999999999999999998 88999999999999999999977 66999999 Q ss_pred CCC Q lcl|Aclame:pro 158 PVS 160 (160) Q Consensus 158 ~~~ 160 (160) |-. T Consensus 160 p~~ 162 (166) T protein:vir:92 160 PHD 162 (166) T ss_pred ccc Confidence 998 No 7 >protein:vir:2108 Length: 166 # NCBI annotation: head completion protein # Family: family:all:1693 # MgeID: mge:46 # MgeName: P22 # Cross-refs: genbank:acc:NP_059632;genbank:gi:9635540;genbank:GeneID:1262828 Probab=100.00 E-value=1.5e-70 Score=403.37 Aligned_cols=158 Identities=34% Similarity=0.464 Sum_probs=155.2 Q ss_pred CCccchHHHHHHHHHHhccCcccccCCCCHHHHHHHHHHHHHHHHhc--ccCcceecceecccCCCCCcccccCCCHHHH Q lcl|Aclame:pro 2 TKPLTKGEIVLFALRKAGIASEATNIDVEPQSFEEGINDLEDLMAEL--QITFGDLGYQFSAEEENPTSDDASGLPRKYK 79 (160) Q Consensus 2 ~~~~Tk~d~V~~Alr~lgvas~at~~dvepq~~e~~i~~Le~MMaeW--~a~gi~~Gy~fa~~~e~~~p~Dd~~lP~~~~ 79 (160) -|.+||||||++|||||||+||||++|||||++|+||++||+||+|| +++||++||+|++++|+|+|+|++|||++|+ T Consensus 1 ~~m~TkgdiVl~AlrklgVas~atltDvEpqs~~dgi~dLe~MMaeW~~~a~gI~lGY~fa~~~e~p~pdD~~glp~~a~ 80 (166) T protein:vir:21 1 MQIKTKGDLVRAALRKLGVASDATLTDVEPQSMQDAVDDLEAMMAEWYQDGKGIITGYVFSDDENPPAEGDDHGLRSSAV 80 (166) T ss_pred CccchHHHHHHHHHHHhccccccccccCChHHHHHHHHHHHHHHHHHhhcCCCceecceecccCCCCCCccccCCCHhHH Confidence 78999999999999999999999999999999999999999999999 9999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhcccccc--cCCCCCCCCccccccCceeeccCCcccCCCCC Q lcl|Aclame:pro 80 QVMGYQLMLRMLSDYGIEPTPRQEASAAAAYDALLTDTLSVPSIAR--RGDMPVGQGNNYTALGTASYYVERGFHAKNTD 157 (160) Q Consensus 80 ~Av~~nLAvrIAp~yGieps~~vv~~A~~a~~~Ll~a~~~~p~~~~--~ndmPvG~Gnr~~~~~~~~yy~~r~~~~~~~~ 157 (160) +||+|||||||||+||+||+++++++|++||++|++++.+.+..++ |||||+|+||+++.|++||||++|+ |++++| T Consensus 81 ~av~~~LAvria~dygie~t~~v~~~A~~aya~Lls~~~~a~~kR~~y~~dmP~G~Gn~~~~~~~~~y~~~~~-~~~~t~ 159 (166) T protein:vir:21 81 SAVFHNLACRIAPDYALEATAKIIATAKYGKELLYKQTAISRAKRAPYPSRMPTGSGNSFANLNEWHYFPGEQ-NADSTT 159 (166) T ss_pred HHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcCCCccchhccccccccccc-cCCCCC Confidence 9999999999999999999999999999999999999999999986 7899999999999999999999988 999999 Q ss_pred CCC Q lcl|Aclame:pro 158 PVS 160 (160) Q Consensus 158 ~~~ 160 (160) |-. T Consensus 160 p~~ 162 (166) T protein:vir:21 160 PHD 162 (166) T ss_pred ccc Confidence 998 No 8 >protein:vir:108311 Length: 249 # NCBI annotation: hypothetical protein # Family: family:all:28027 # MgeID: mge:2007 # MgeName: BA3 # Cross-refs: genbank:acc:YP_001552279;genbank:gi:160700604;genbank:GeneID:5758827 Probab=99.80 E-value=1.1e-22 Score=140.87 Aligned_cols=141 Identities=19% Similarity=0.291 Sum_probs=110.0 Q ss_pred CCCccchHHHHHHHHHHhccCcccccCCCCHHHHHHHHHHHHHHHHhcccCc---------------------------- Q lcl|Aclame:pro 1 MTKPLTKGEIVLFALRKAGIASEATNIDVEPQSFEEGINDLEDLMAELQITF---------------------------- 52 (160) Q Consensus 1 ~~~~~Tk~d~V~~Alr~lgvas~at~~dvepq~~e~~i~~Le~MMaeW~a~g---------------------------- 52 (160) |.| |.+||+..|||++||.- .=.--..++++|++..|++||.+|+..+ T Consensus 1 ~sq--t~~~II~~ALk~aGvla--~Getp~aee~~DA~~~Ln~Ml~~W~~~rl~V~~~~~~t~vl~~G~~~YtVGi~~~~ 76 (249) T protein:vir:10 1 MAR--TVGDIIRSSMRKIGVLA--AGEPLPANEGDDALEVFAQMVDAWTNETLLIPVVNVVTKVLVENQPEYTIGIYPEP 76 (249) T ss_pred Ccc--CHHHHHHHHHHHccccc--cCCCCCHhHHHHHHHHHHHHHHHHHhCceeEEeeeeeeeeccCCcceEEeeecccc Confidence 887 56899999999999973 3223347999999999999999996542 Q ss_pred ---------ceecc------------------------------------------------eecccCC----------- Q lcl|Aclame:pro 53 ---------GDLGY------------------------------------------------QFSAEEE----------- 64 (160) Q Consensus 53 ---------i~~Gy------------------------------------------------~fa~~~e----------- 64 (160) |.+|+ ..+.... T Consensus 77 ~~~~~p~~~i~~~RP~~i~sA~~r~~~d~~~~~~~i~~EdY~rI~~Kt~~~~ps~~f~d~g~p~g~i~vwP~P~~~~tl~ 156 (249) T protein:vir:10 77 VPDPLPSNHIETGRPERILSAFIRDRYDTDYIQEIIDVETYSRISRKTNTSRPSRFYVSKGWPLNTILFESVPYQDETLH 156 (249) T ss_pred ccccCCCCceEeecchheeeeeeecccccchhhhhhchhhhhhcCCCCCCCCceEEEEcCCCCcceEEEEecCCCCceEE Confidence 11121 1111111 Q ss_pred ---------C---CCcccccCCCHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhcccccccCCCCCC Q lcl|Aclame:pro 65 ---------N---PTSDDASGLPRKYKQVMGYQLMLRMLSDYGIEPTPRQEASAAAAYDALLTDTLSVPSIARRGDMPVG 132 (160) Q Consensus 65 ---------~---~~p~Dd~~lP~~~~~Av~~nLAvrIAp~yGieps~~vv~~A~~a~~~Ll~a~~~~p~~~~~ndmPvG 132 (160) . +++.|+++||++|..|++||||+||+|+||+|+++.|+..|+.|+..|.+++.+++.+. ++||++ T Consensus 157 ~~v~~pL~~f~~~a~ltd~i~LPpey~~AL~~NLavel~peyG~ev~~~v~~~A~~a~~~ikraN~q~~~l~--~~~~~~ 234 (249) T protein:vir:10 157 LEVVQPLSEILPTACLTDVINLPPGYERALIYNLCLELASEWGKEVTALVATQAVEGKKWLKRNNYRPLVLG--ADRAVA 234 (249) T ss_pred EEEEeehhhhccccccchhccCCHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHhccCcceeee--cccccc Confidence 1 45668999999999999999999999999999999999999999999999999999887 456666 Q ss_pred CCccccccCceeeccCCcc Q lcl|Aclame:pro 133 QGNNYTALGTASYYVERGF 151 (160) Q Consensus 133 ~Gnr~~~~~~~~yy~~r~~ 151 (160) .++| |-+-|..+.+- T Consensus 235 ~~r~----G~~~~~~~~~~ 249 (249) T protein:vir:10 235 TQRK----GIGTYIIEQGP 249 (249) T ss_pred cccC----cceEEEecCCC Confidence 6644 66777777663 No 9 >protein:vir:78741 Length: 197 # NCBI annotation: tail tube A # Family: family:all:824 # MgeID: mge:1856 # MgeName: Syn5 # Cross-refs: genbank:acc:YP_001285449;genbank:gi:148724483;genbank:GeneID:5220212 Probab=55.77 E-value=0.47 Score=22.37 Aligned_cols=137 Identities=18% Similarity=0.178 Sum_probs=85.3 Q ss_pred CCCccchHHHHHHHHHHhccCcccccCCCCHHHHHHHHHHHHHHHHhcccCcceecceecccCC-CCCcc---------- Q lcl|Aclame:pro 1 MTKPLTKGEIVLFALRKAGIASEATNIDVEPQSFEEGINDLEDLMAELQITFGDLGYQFSAEEE-NPTSD---------- 69 (160) Q Consensus 1 ~~~~~Tk~d~V~~Alr~lgvas~at~~dvepq~~e~~i~~Le~MMaeW~a~gi~~Gy~fa~~~e-~~~p~---------- 69 (160) |++.+|+=|-|-.-||.+|=++=-++ |..--++..+..-|+....+-+.+ ||-|-.+.. +..|+ T Consensus 1 m~~~~teLdAVN~~L~aIGEspV~sl-d~~npdva~a~~iL~~v~~~vqse----GW~FNte~~~~l~pd~~g~I~~P~n 75 (197) T protein:vir:78 1 MASKLTKLGAVNIVLTNIGMAPVTLI-DSNNPMVATAQTILDEVSGSVQSE----GWSYNTERAYPFIKDNTGRIAIPSN 75 (197) T ss_pred CccchhHHHHHHHHHHhhCCccccee-eCCCccHHHHHHHHHHHHHHHhhC----CceEeecCCceecCCCCCeEecCcc Confidence 99999999999999999998775554 444459999999999999998754 555554332 22222 Q ss_pred -------------------------------------------cccCCCHHHHHHHHHHHHHHHHHhh-CC-CCCHHHHH Q lcl|Aclame:pro 70 -------------------------------------------DASGLPRKYKQVMGYQLMLRMLSDY-GI-EPTPRQEA 104 (160) Q Consensus 70 -------------------------------------------Dd~~lP~~~~~Av~~nLAvrIAp~y-Gi-eps~~vv~ 104 (160) |=-+||..+.+.|.+..|.+-.-.+ |- +..+.+.. T Consensus 76 ~L~vd~~~~~~~~~v~Rgg~LYD~~n~T~~F~~pi~~~iv~~~~FedlPe~~~~yI~~rAa~~f~~~~~G~~~~~q~l~~ 155 (197) T protein:vir:78 76 VLSLDCASTSKYDLIIRGGFLYDKAGHTDVFTENLELDVVWCFEFDDLPEAVKNYITIRAANLFAGRAVGSAEAVKYSQR 155 (197) T ss_pred ceEEecCCCceeeEEEeCCeEEeccCCcEEeCCceEEEEEeecChhhhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHH Confidence 2236899999999999999887666 43 33333333 Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCccccccCc----eee Q lcl|Aclame:pro 105 SAAAAYDALLTDTLSVPSIARRGDMPVGQGNNYTALGT----ASY 145 (160) Q Consensus 105 ~A~~a~~~Ll~a~~~~p~~~~~ndmPvG~Gnr~~~~~~----~~y 145 (160) ....|+..|...-.....+-+ -+.|.+.+.+ .|.- +|| T Consensus 156 ~e~~a~~~~~~~e~~q~~~Nm-l~~~~~~~~~--~yrp~~~l~r~ 197 (197) T protein:vir:78 156 EEAAARAAIIEYETQQGDYNM-LESESGRDIY--TYRPFDAVYRF 197 (197) T ss_pred HHHHHHHHHHHHHHhhcCcCc-ccCccccCcC--cccchhhhhcC Confidence 344444444333333333322 1344444422 2222 344 No 10 >protein:vir:106985 Length: 276 # NCBI annotation: neck protein gp13 # Family: family:all:1103 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195127;genbank:gi:58532904;uniprot:Q5GQW0;genbank:GeneID:3260482 Probab=43.32 E-value=0.53 Score=22.11 Aligned_cols=120 Identities=18% Similarity=0.186 Sum_probs=59.2 Q ss_pred CCCccchHHHHHHHHHHhccCcccccCCCCHHHHHHHHHHHHHHHHhcccCcceecceecccCCCCCcccccCCCHHHHH Q lcl|Aclame:pro 1 MTKPLTKGEIVLFALRKAGIASEATNIDVEPQSFEEGINDLEDLMAELQITFGDLGYQFSAEEENPTSDDASGLPRKYKQ 80 (160) Q Consensus 1 ~~~~~Tk~d~V~~Alr~lgvas~at~~dvepq~~e~~i~~Le~MMaeW~a~gi~~Gy~fa~~~e~~~p~Dd~~lP~~~~~ 80 (160) |+++.++.||-.-+||+||=-- -..-|+.+++.|.|++==.+-.||--+|..=+|..-. .+.+|.. + T Consensus 1 ma~p~s~~eLkdyiLRrLGaPi--i~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~----i~~dd~~---~---- 67 (276) T protein:vir:10 1 MAKPSSKQELIDYCKRQLGAPV--LQINTDSAQDDDIIDQAIQYYHEYHFDGIERMYLKHQ----FTADDVT---R---- 67 (276) T ss_pred CCCCCCHHHHHHHHHHhcCCce--EEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEE----echHHhh---h---- Confidence 9999999999999999999743 4466779999999999999999998888888875433 1111111 1 Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhcccccccCCCC-------------CCCCccccc--c-Ccee Q lcl|Aclame:pro 81 VMGYQLMLRMLSDYGIEPTPRQEASAAAAYDALLTDTLSVPSIARRGDMP-------------VGQGNNYTA--L-GTAS 144 (160) Q Consensus 81 Av~~nLAvrIAp~yGieps~~vv~~A~~a~~~Ll~a~~~~p~~~~~ndmP-------------vG~Gnr~~~--~-~~~~ 144 (160) +++. ...+...++-+..-.++.| .|.++-+-. | -.+. T Consensus 68 ~~~~---------------------------~~~~~~~s~~~~~g~~~Y~~~pd~v~gi~~v~~g~s~~~g~n~f~~~~q 120 (276) T protein:vir:10 68 FTSS---------------------------DQLTTAPNNDDWENRNNYIQVPDAVIGISKVFGVSSNFLRNNLFGLSNQ 120 (276) T ss_pred hhhh---------------------------hhcccccceeeeeccCcceecCcchhhhhhhcccCccccCCccccccHH Confidence 1000 1111111111111111111 011111000 0 0122 Q ss_pred eccCCcccCCCCC-----CCC Q lcl|Aclame:pro 145 YYVERGFHAKNTD-----PVS 160 (160) Q Consensus 145 yy~~r~~~~~~~~-----~~~ 160 (160) ||-.--.|....- .+. T Consensus 121 ~fl~d~~~~~~~ql~~~g~~~ 141 (276) T protein:vir:10 121 YYLMDLFSFSTGSAFSFGNFD 141 (276) T ss_pred HHHHHHhcccccceeecccee Confidence 2221111110000 011 No 11 >protein:vir:103760 Length: 207 # NCBI annotation: hypothetical protein # Family: family:all:1524 # MgeID: mge:1645 # MgeName: BcepC6B # Cross-refs: genbank:acc:YP_024931;genbank:gi:48697201;genbank:GeneID:2846084 Probab=29.17 E-value=1.7 Score=19.35 Aligned_cols=143 Identities=15% Similarity=0.182 Sum_probs=74.8 Q ss_pred CCCccchHHHHHHHHHHhccCcccccCCCCHHHHHH--------HHHHHHHHHHhcc-----------cCcceecceecc Q lcl|Aclame:pro 1 MTKPLTKGEIVLFALRKAGIASEATNIDVEPQSFEE--------GINDLEDLMAELQ-----------ITFGDLGYQFSA 61 (160) Q Consensus 1 ~~~~~Tk~d~V~~Alr~lgvas~at~~dvepq~~e~--------~i~~Le~MMaeW~-----------a~gi~~Gy~fa~ 61 (160) |+ |+=||.-.||.+||-. ++.+.+.++-+. .+.+--.=++.|. +..-..||.++= T Consensus 1 M~---S~v~IcN~AL~~lGa~---~I~s~~e~s~~A~~c~~~Y~~~r~~~L~~~pW~FA~~r~~La~~~~~P~~~~~yaY 74 (207) T protein:vir:10 1 MA---SQVGICNRALTKIGDK---RITSLDEDSKAAATLNSMYDDVLDACLRAHVWSFTKARAQLAALAEAPLFGFSYQY 74 (207) T ss_pred CC---CHHHHHHHHHHhhchh---hhcccccCCHHHHHHHHhhHHHHHHHHhccChhhHhhhhhhcccccCCCCCCcccc Confidence 77 6778999999999954 455555443322 2222222334451 111112331110 Q ss_pred ------------cC------------------------CC-------CCcccccCCCHHHHHHHHHHHHHHHHHhhCCCC Q lcl|Aclame:pro 62 ------------EE------------------------EN-------PTSDDASGLPRKYKQVMGYQLMLRMLSDYGIEP 98 (160) Q Consensus 62 ------------~~------------------------e~-------~~p~Dd~~lP~~~~~Av~~nLAvrIAp~yGiep 98 (160) .+ +. .+-.|+.-.|+-+.+|+.+-||-+||...- - T Consensus 75 ~LP~Dclrv~~v~~~~~~~~~~~~~~~~v~g~~ll~~~~~~~~l~Y~~~v~d~~~fd~~F~~ala~~LAa~lA~pLt--~ 152 (207) T protein:vir:10 75 RLPTDFIRLLQVGQFDVYPRTDTRGLFSIENGNILTDMQAPLYIRYAKRVTDPNAMDALFREAFACRLAAEACESLT--Q 152 (207) T ss_pred cCcccceEeeeecCCCCccccccccceEecCCeEEecCCCcEEEEEeecCCChhhhhHHHHHHHHHHHHHHhhHhhc--C Confidence 00 00 011245568999999999999999998764 3 Q ss_pred CHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCccccccCceeeccCCcccCCCCCCCC Q lcl|Aclame:pro 99 TPRQEASAAAAYDALLTDTLSVPSIARRGDMPVGQGNNYTALGTASYYVERGFHAKNTDPVS 160 (160) Q Consensus 99 s~~vv~~A~~a~~~Ll~a~~~~p~~~~~ndmPvG~Gnr~~~~~~~~yy~~r~~~~~~~~~~~ 160 (160) +..+...+...++.++.....+=...++ .-|..... |-..|. +-.+++.+||- T Consensus 153 ~~~~~~~~~q~~~~~l~~A~~~da~e~~-~~~~~~~~----~l~aR~----~~~~~~~~~~~ 205 (207) T protein:vir:10 153 SATKRQGAWAEHDQAIAAAIRVNAIERP-AQPLGDDT----WLESRN----GVAFPGETPII 205 (207) T ss_pred ChHHHHHHHHHHHHHHHHHHhcccccCc-ccccCCcc----hhhhcc----cccccccCCcc Confidence 4456666666666666544333333332 23443332 222332 22355566776 No 12 >protein:vir:103305 Length: 245 # NCBI annotation: tail-like protein # Family: family:all:824 # MgeID: mge:1609 # MgeName: Era103 # Cross-refs: genbank:acc:YP_001039669;genbank:gi:125999998;genbank:GeneID:4818381 Probab=26.21 E-value=2 Score=18.97 Aligned_cols=147 Identities=19% Similarity=0.167 Sum_probs=84.5 Q ss_pred CCC-----ccchHHHHHHHHHHhccCcccccCCCCHHHHHHHHHHHHHHHHhcccCcceecceecccCC-CCCcc----- Q lcl|Aclame:pro 1 MTK-----PLTKGEIVLFALRKAGIASEATNIDVEPQSFEEGINDLEDLMAELQITFGDLGYQFSAEEE-NPTSD----- 69 (160) Q Consensus 1 ~~~-----~~Tk~d~V~~Alr~lgvas~at~~dvepq~~e~~i~~Le~MMaeW~a~gi~~Gy~fa~~~e-~~~p~----- 69 (160) |+. +=|+=|-|-.-||.+|=++=.. .|..-.+++.+-+-|..|..+=|.+ ..-||-|...+. +..|| T Consensus 13 ~~~~~~~~~dteLdAVN~~L~aIGEsPV~s-ld~~npdva~A~~IL~~v~~~vQ~l-lseGW~FNte~~~~ltPd~~g~i 90 (245) T protein:vir:10 13 LASVNLDTVDTRLEAINLCLRAVGYASIES-EDSGDLDAADASKILATVGQRVQYN-GGKGWWFNVEPNWQMTPDANGEI 90 (245) T ss_pred CcccccccccchHHHHHHHHHhhccccccc-ccCCchhHHHHHHHHHHHHHHHHhh-cCCCeeEeecCCceeccCCCCce Confidence 432 2355577888899999877544 5666668888889999997774400 111344443222 11111 Q ss_pred ---------------------------------------------------------cccCCCHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 70 ---------------------------------------------------------DASGLPRKYKQVMGYQLMLRMLS 92 (160) Q Consensus 70 ---------------------------------------------------------Dd~~lP~~~~~Av~~nLAvrIAp 92 (160) |--.||.-+.++|.+..|.+-+- T Consensus 91 ~iP~n~L~v~~~~~~~~~~~~~v~RGgkLYD~~n~T~~F~~pv~~~~~~~v~iV~~~pFedlPe~~q~yI~~rAA~~f~~ 170 (245) T protein:vir:10 91 LIPNNAIAAWQDVRYDDKKVLISIRGRKVYNMNTHSTDFSNSLNREGFFRMTFMLNLPFEHMPVSARQAIAYQAAVEFMV 170 (245) T ss_pred ecCccchhhhcccccCCCccceEEcCCeeEecccCceeccCccccccceeEEEEeeCChhhccHHHHHHHHHHHHHHHHh Confidence 11248999999999999988765 Q ss_pred h-hCCC-CCHHHHHHHHHHHHHHHHHhhhcccccc----------------cCCCCCCCCccccccCceeeccCC Q lcl|Aclame:pro 93 D-YGIE-PTPRQEASAAAAYDALLTDTLSVPSIAR----------------RGDMPVGQGNNYTALGTASYYVER 149 (160) Q Consensus 93 ~-yGie-ps~~vv~~A~~a~~~Ll~a~~~~p~~~~----------------~ndmPvG~Gnr~~~~~~~~yy~~r 149 (160) . +|-. ..+.+...+..++..+...-.+...+-+ +++-|.=+-|-|++++||.-|-+. T Consensus 171 ~~~G~~~~~q~l~q~e~~a~~~~~~~~~~q~~~Nm~~~~p~~~~~r~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (245) T protein:vir:10 171 SKEFDAQKVQIWQQLAQQMQIDMGQESANQQSLNMFVNNPTQAHFGSMVGGPNANATFSRNPYNAYGGYSRYGRS 245 (245) T ss_pred hccCchhHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCchhhhcchhccccccccccccCCcccccccccccCC Confidence 4 4443 2233334444555555444433333322 444555555667777777766654 Done!