Query lcl|Aclame:protein:vir:3301|NCBI_annot:hypothetical protein|genbank:acc:NP_049517;genbank:gi:9632523;genbank:GeneID:1262009 Match_columns 223 No_of_seqs 35 out of 42 Neff 5.3 Searched_HMMs 1612 Date Fri Nov 29 22:04:46 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_57 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_57_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:9964 Length: 223 # 100.0 2E-108 2E-111 610.5 24.6 223 1-223 1-223 (223) 2 protein:vir:10130 Length: 223 100.0 2E-108 2E-111 610.5 24.6 223 1-223 1-223 (223) 3 protein:vir:104383 Length: 166 100.0 7.7E-67 4.8E-70 383.0 17.8 166 58-223 1-166 (166) 4 protein:vir:105573 Length: 225 99.0 1.5E-11 9.6E-15 79.9 11.3 184 38-223 1-224 (225) 5 protein:vir:2779 Length: 216 # 98.0 7.1E-07 4.4E-10 54.3 13.8 175 37-213 1-216 (216) 6 protein:vir:823 Length: 216 # 98.0 7.1E-07 4.4E-10 54.3 13.8 175 37-213 1-216 (216) 7 protein:vir:3302 Length: 216 # 98.0 7.1E-07 4.4E-10 54.3 13.8 175 37-213 1-216 (216) 8 protein:vir:5111 Length: 234 # 97.8 1.6E-06 9.9E-10 52.4 12.9 176 37-220 1-234 (234) 9 protein:vir:8326 Length: 201 # 88.3 0.0072 4.5E-06 32.3 6.2 145 37-214 1-201 (201) 10 protein:vir:8841 Length: 208 # 83.0 0.072 4.5E-05 26.8 14.3 175 34-218 1-208 (208) 11 protein:vir:8104 Length: 170 # 80.8 0.092 5.7E-05 26.3 8.8 153 47-209 1-170 (170) 12 protein:vir:81255 Length: 180 45.5 0.77 0.00048 21.2 10.9 158 37-208 1-180 (180) 13 protein:vir:94538 Length: 125 23.7 2.3 0.0014 18.6 7.8 113 37-204 1-125 (125) No 1 >protein:vir:9964 Length: 223 # NCBI annotation: hypothetical protein # Family: family:all:2410 # MgeID: mge:179 # MgeName: Stx1 converting bacteriophage # Cross-refs: genbank:acc:NP_859094;genbank:gi:32170849;genbank:GeneID:2653173 Probab=100.00 E-value=2.4e-108 Score=610.54 Aligned_cols=223 Identities=100% Similarity=1.497 Sum_probs=221.5 Q ss_pred CCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCcceeee Q lcl|Aclame:pro 1 MRQKSWIFTKTRKKRLRHSVSGCVRHFAVVLRRLNSMAELSDFLPYVRRHISGPLNIMMTDALSMAAVAFSRQSLVCRRE 80 (223) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~lddflp~V~~~~pg~p~~~~~~Alr~AAi~FCreS~vwr~~ 80 (223) |||||||||||||||||||||||||||||||||||||+++|||||.|++++||||++||++||++|||+||+||++||++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Mv~~d~fLP~Vr~~vp~~l~~~~~~aLr~AAieFCReS~~~R~t 80 (223) T protein:vir:99 1 MRQKSWIFTKTRKKRLRHSVSGCVRHFAVVLRRLNSMAELSDFLPYVRRHISGPLNIMMTDALSMAAVAFSRQSLVCRRE 80 (223) T ss_pred CCccchhhhhhHHHHHHhHHHHHHHHHHHHHHHHhhhccHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHhhccceeec Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceecCCcceeeccCCCceeeeEEEeeecCCeeeecccceEeccCCeEEEecCCCcEEEEEEEeeCCCCccchHHHHHH Q lcl|Aclame:pro 81 VTVVPVAGKEIVLPYDKDDEECVHIIRISDDNHELFVGRDVDISSGRSLRFACSPGEVSVLYAVAPKAGRSQIPDELLTW 160 (223) Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~~iv~i~~it~~g~~L~~g~d~~~~~~~~i~~~~~~~~l~V~~al~Ps~~a~~lPD~L~d~ 160 (223) +++..+++++++...+++++++.+|++++++|++|++|.+|++.++|+|+|++++|+|+|+++++|+.++++|||+|+|| T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~rI~~v~~~g~~L~~G~~~t~~s~d~l~l~~~~~tl~V~~alkPs~~a~~lPD~L~dy 160 (223) T protein:vir:99 81 VTVVPVAGKEIVLPYDKDDEECVHIIRISDDNHELFVGRDVDISSGRSLRFACSPGEVSVLYAVAPKAGRSQIPDELLTW 160 (223) T ss_pred ccccCCCCcceEEeeccccccceeeEEeecCCeeeecccceeecCCceEEEEeCCCeEEEEEEeccCcchhhhhHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhCcCCCcCCHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCccccCC Q lcl|Aclame:pro 161 PEEVAAGALERLFMQTGVSWSDPLRAQYFSVQFSEGIRRAYRHTLATSPYSSYRNPVRRQRFF 223 (223) Q Consensus 161 ~eaI~~GAla~L~l~P~k~WsnPqlA~y~~~~F~dgir~A~R~~~~~~~~~~~rnpvR~~~Ff 223 (223) +|+|++||+++|+|||||||||||+|+||+++|+||||+|||++++.+++++|+||+|+|+|| T Consensus 161 ~eaI~~GA~arLlmmP~kpWsNP~lA~y~~~~F~eg~r~Akr~ale~~~~~~~~nP~R~~~FF 223 (223) T protein:vir:99 161 PEEVAAGALERLFMQTGVSWSDPLRAQYFSVQFSEGIRRAYRHTLATSPYSSYRNPVRRQRFF 223 (223) T ss_pred HHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCccccccC Confidence 999999999999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:10130 Length: 223 # NCBI annotation: hypothetical protein # Family: family:all:2410 # MgeID: mge:180 # MgeName: Stx2 converting bacteriophage II # Cross-refs: genbank:acc:NP_859260;genbank:gi:32171016;genbank:GeneID:2653415 Probab=100.00 E-value=2.4e-108 Score=610.54 Aligned_cols=223 Identities=100% Similarity=1.497 Sum_probs=221.5 Q ss_pred CCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCcceeee Q lcl|Aclame:pro 1 MRQKSWIFTKTRKKRLRHSVSGCVRHFAVVLRRLNSMAELSDFLPYVRRHISGPLNIMMTDALSMAAVAFSRQSLVCRRE 80 (223) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~lddflp~V~~~~pg~p~~~~~~Alr~AAi~FCreS~vwr~~ 80 (223) |||||||||||||||||||||||||||||||||||||+++|||||.|++++||||++||++||++|||+||+||++||++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Mv~~d~fLP~Vr~~vp~~l~~~~~~aLr~AAieFCReS~~~R~t 80 (223) T protein:vir:10 1 MRQKSWIFTKTRKKRLRHSVSGCVRHFAVVLRRLNSMAELSDFLPYVRRHISGPLNIMMTDALSMAAVAFSRQSLVCRRE 80 (223) T ss_pred CCccchhhhhhHHHHHHhHHHHHHHHHHHHHHHHhhhccHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHhhccceeec Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceecCCcceeeccCCCceeeeEEEeeecCCeeeecccceEeccCCeEEEecCCCcEEEEEEEeeCCCCccchHHHHHH Q lcl|Aclame:pro 81 VTVVPVAGKEIVLPYDKDDEECVHIIRISDDNHELFVGRDVDISSGRSLRFACSPGEVSVLYAVAPKAGRSQIPDELLTW 160 (223) Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~~iv~i~~it~~g~~L~~g~d~~~~~~~~i~~~~~~~~l~V~~al~Ps~~a~~lPD~L~d~ 160 (223) +++..+++++++...+++++++.+|++++++|++|++|.+|++.++|+|+|++++|+|+|+++++|+.++++|||+|+|| T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~rI~~v~~~g~~L~~G~~~t~~s~d~l~l~~~~~tl~V~~alkPs~~a~~lPD~L~dy 160 (223) T protein:vir:10 81 VTVVPVAGKEIVLPYDKDDEECVHIIRISDDNHELFVGRDVDISSGRSLRFACSPGEVSVLYAVAPKAGRSQIPDELLTW 160 (223) T ss_pred ccccCCCCcceEEeeccccccceeeEEeecCCeeeecccceeecCCceEEEEeCCCeEEEEEEeccCcchhhhhHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhCcCCCcCCHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCccccCC Q lcl|Aclame:pro 161 PEEVAAGALERLFMQTGVSWSDPLRAQYFSVQFSEGIRRAYRHTLATSPYSSYRNPVRRQRFF 223 (223) Q Consensus 161 ~eaI~~GAla~L~l~P~k~WsnPqlA~y~~~~F~dgir~A~R~~~~~~~~~~~rnpvR~~~Ff 223 (223) +|+|++||+++|+|||||||||||+|+||+++|+||||+|||++++.+++++|+||+|+|+|| T Consensus 161 ~eaI~~GA~arLlmmP~kpWsNP~lA~y~~~~F~eg~r~Akr~ale~~~~~~~~nP~R~~~FF 223 (223) T protein:vir:10 161 PEEVAAGALERLFMQTGVSWSDPLRAQYFSVQFSEGIRRAYRHTLATSPYSSYRNPVRRQRFF 223 (223) T ss_pred HHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCccccccC Confidence 999999999999999999999999999999999999999999999999999999999999999 No 3 >protein:vir:104383 Length: 166 # NCBI annotation: hypothetical protein # Family: family:all:2410 # MgeID: mge:1471 # MgeName: 86 # Cross-refs: genbank:acc:YP_794066;genbank:gi:116222011;genbank:GeneID:4397445 Probab=100.00 E-value=7.7e-67 Score=383.03 Aligned_cols=166 Identities=99% Similarity=1.481 Sum_probs=164.5 Q ss_pred HHHHHHHHHHHHHHHhCcceeeeccceecCCcceeeccCCCceeeeEEEeeecCCeeeecccceEeccCCeEEEecCCCc Q lcl|Aclame:pro 58 MMTDALSMAAVAFSRQSLVCRREVTVVPVAGKEIVLPYDKDDEECVHIIRISDDNHELFVGRDVDISSGRSLRFACSPGE 137 (223) Q Consensus 58 ~~~~Alr~AAi~FCreS~vwr~~~~~~~v~~~~~~~~~~~~~~~iv~i~~it~~g~~L~~g~d~~~~~~~~i~~~~~~~~ 137 (223) ||++||++|||+||+||++|++++++..+++++.+...++++++++.|++++++|++|++|++|++.++|+|+|++++++ T Consensus 1 ~m~~Al~~AaieFCreS~~~r~t~t~~~~~~~~~v~~~~~~d~~~~~i~~v~~~~~~L~~g~~~~~~s~~~L~~~~~~~~ 80 (166) T protein:vir:10 1 MMTDALSMAAVAFSRQSLVCRREVTVVPVAGKEIVLPYDKDDEECVHIIRISDDNHELFVGRDVDISSGRSLRFACSPGE 80 (166) T ss_pred ChHHHHHHHHHHHHhhccceeeeecccccCCcceEEecCCccceeeeEEeeecCCceeeccccceecCCcEEEEecCCCE Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999999999 Q ss_pred EEEEEEEeeCCCCccchHHHHHHHHHHHHHHHHHHHhCcCCCcCCHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCC Q lcl|Aclame:pro 138 VSVLYAVAPKAGRSQIPDELLTWPEEVAAGALERLFMQTGVSWSDPLRAQYFSVQFSEGIRRAYRHTLATSPYSSYRNPV 217 (223) Q Consensus 138 l~V~~al~Ps~~a~~lPD~L~d~~eaI~~GAla~L~l~P~k~WsnPqlA~y~~~~F~dgir~A~R~~~~~~~~~~~rnpv 217 (223) |+|+++++|+.++++|||+|+||+|+|++||+++|+|||+|||||||+|+||+++|+||||+|||++++.+++++|+||+ T Consensus 81 l~V~~a~~Ps~~a~~lPd~L~dy~~aI~~GA~~~L~mmP~k~WsnP~la~y~~~~F~eg~r~A~r~a~e~~~~~~~~nP~ 160 (166) T protein:vir:10 81 VSVLYAVAPKAGRSQIPDELLTWPEEVAAGALERLFMQTGVSWSDPLRAQYFSVQFSEGIRRAYRHTLATSPYSSYRNPA 160 (166) T ss_pred EEEEEEeccCCCCcccchHHhhHHHHHHHHHHHHHHhCCCCCCCChhhhHHHHHHHHHHHHHHHHHhhhhcCccccCCCc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccCC Q lcl|Aclame:pro 218 RRQRFF 223 (223) Q Consensus 218 R~~~Ff 223 (223) |+|+|| T Consensus 161 R~~~Ff 166 (166) T protein:vir:10 161 RRQRFY 166 (166) T ss_pred cccccC Confidence 999999 No 4 >protein:vir:105573 Length: 225 # NCBI annotation: hypothetical protein # Family: family:all:1423 # MgeID: mge:1540 # MgeName: F116 # Cross-refs: genbank:acc:YP_164310;genbank:gi:56692957;genbank:GeneID:3197184 Probab=98.95 E-value=1.5e-11 Score=79.86 Aligned_cols=184 Identities=18% Similarity=0.136 Sum_probs=124.2 Q ss_pred CCHHHHHHHHHHhCCCC------cHHHHHHHHHHHHHHHHHhCcceeeeccc----eecCCcceeeccCCCceeeeEEEe Q lcl|Aclame:pro 38 AELSDFLPYVRRHISGP------LNIMMTDALSMAAVAFSRQSLVCRREVTV----VPVAGKEIVLPYDKDDEECVHIIR 107 (223) Q Consensus 38 ~~lddflp~V~~~~pg~------p~~~~~~Alr~AAi~FCreS~vwr~~~~~----~~v~~~~~~~~~~~~~~~iv~i~~ 107 (223) .++.+++..++....-. +++.+.+-|++|.+++|.++++|+.+-+. +.+..|+.-.++...-.+|..+.. T Consensus 1 m~~~~lI~r~~~~l~D~~~~~rW~~~el~~~lNdAv~e~~~r~rL~rpda~~~~~~i~l~~Gt~q~~~~~~~~~I~~~~~ 80 (225) T protein:vir:10 1 MTLADLIRRVRTDANDMVEPYFWSDQDVADWLNDAVREAAVRGRLIHESQADAVCRIEVVAGTAVYQLHASLYELSHLGF 80 (225) T ss_pred CCHHHHHHHHHHHhccccccccCChHHHHHHHHHHHHHHHHhcccccccCCCceeeeeecCccccccCchHHHHHHHHhh Confidence 67899999998887732 47899999999999999999999887632 345555554444443333322222 Q ss_pred eec---CCeeeec-----------------cc-ceEeccCCeEEEecCC---CcEEEEEEEeeCCCC------ccchHHH Q lcl|Aclame:pro 108 ISD---DNHELFV-----------------GR-DVDISSGRSLRFACSP---GEVSVLYAVAPKAGR------SQIPDEL 157 (223) Q Consensus 108 it~---~g~~L~~-----------------g~-d~~~~~~~~i~~~~~~---~~l~V~~al~Ps~~a------~~lPD~L 157 (223) +.. .++++.+ |. .|....+++++++|++ +.|++.++..|.... +..|++- T Consensus 81 ~~~~~~~~~~~~~~s~e~LD~~~P~W~~~tg~p~~~~~d~~~~~l~P~p~~~~~vel~~~r~P~~~~~~~~~D~~~p~i~ 160 (225) T protein:vir:10 81 YPADMSRPTMPVLKSAEVLDVELPEWRACTGKPLYAIQGDTSLRLVPTPDRAGILRVEGYRTPLADMALADKDTAQPEIH 160 (225) T ss_pred cCcccCCceecccccHHHhcccCCCcccCCCCceEEEeCCcEEEEEecCCCceEEEEEEEeecchhhhccccccccCccc Confidence 212 1222221 22 2555678999999964 457777777775322 2234433 Q ss_pred HHHHHHHHHHHHHHHHhCcCCCcCCHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCccccCC Q lcl|Aclame:pro 158 LTWPEEVAAGALERLFMQTGVSWSDPLRAQYFSVQFSEGIRRAYRHTLATSPYSSYRNPVRRQRFF 223 (223) Q Consensus 158 ~d~~eaI~~GAla~L~l~P~k~WsnPqlA~y~~~~F~dgir~A~R~~~~~~~~~~~rnpvR~~~Ff 223 (223) .-|...|.+=++.+-++.|+.+-.||++|+-|.|.|.+++. -+...+..-.++-+.|.+-+.|| T Consensus 161 ~~y~~~Lvdw~lyRa~skd~~~~~d~~rA~~h~q~F~~alG--~k~~ad~~r~~r~~~p~~~~~~~ 224 (225) T protein:vir:10 161 AEHHRHLVQWALYRGFSIPDMESFDPNRAALAEAAFTAYFG--ERPDSDLRRITREDVPHHVEAFW 224 (225) T ss_pred hhhHHHHHHHHHHHHhcCcCccccChHHHHHHHHHHHHHhC--CchhHHHHHhccccCcccccccC Confidence 45999999999999999999999999999999999999882 11122222233446778876777 No 5 >protein:vir:2779 Length: 216 # NCBI annotation: hypothetical protein # Family: family:all:1423 # MgeID: mge:59 # MgeName: Stx2 converting bacteriophage I # Cross-refs: genbank:acc:NP_612896;genbank:gi:20065813;genbank:GeneID:935638 Probab=98.01 E-value=7.1e-07 Score=54.30 Aligned_cols=175 Identities=13% Similarity=0.076 Sum_probs=110.4 Q ss_pred CCCHHHHHHHHHHhCCCC-----cHHHHHHHHHHHHHHHHHhCcceeeeccceecCCcceeeccCCCceeeeEEEeeecC Q lcl|Aclame:pro 37 MAELSDFLPYVRRHISGP-----LNIMMTDALSMAAVAFSRQSLVCRREVTVVPVAGKEIVLPYDKDDEECVHIIRISDD 111 (223) Q Consensus 37 M~~lddflp~V~~~~pg~-----p~~~~~~Alr~AAi~FCreS~vwr~~~~~~~v~~~~~~~~~~~~~~~iv~i~~it~~ 111 (223) |.++.+++-.++..+.-+ ++..+.+-|.+|..+.|-+..=-....+.+.+..|..-.++.. ...++.|.+. .+ T Consensus 1 ~~t~~~lI~r~~~~l~D~~~~rW~~~el~~~lNdAv~e~~l~rpda~~~~~~i~l~~Gt~q~~p~~-~~~lI~v~r~-~~ 78 (216) T protein:vir:27 1 MTTITEIIGRVNTQLVDPMMVRWPLQELCDYYNDAVRAVILARPDAGASLETISCVPGARQVLPDG-VIQLLDVICL-SD 78 (216) T ss_pred CccHHHHHHHHHHhhhcccccccChHHHHHHHHHHHHHHHhhcCCCCcceeeEeccccccccccch-hhhhhhhhhh-CC Confidence 999999999999887642 2677999999999999988743333334344555554433332 2333455554 25 Q ss_pred Ceeeec-----------------ccc--eEecc--CCeEEEecCC---CcEEEEEEEeeCCC---C--ccchHHHHH-HH Q lcl|Aclame:pro 112 NHELFV-----------------GRD--VDISS--GRSLRFACSP---GEVSVLYAVAPKAG---R--SQIPDELLT-WP 161 (223) Q Consensus 112 g~~L~~-----------------g~d--~~~~~--~~~i~~~~~~---~~l~V~~al~Ps~~---a--~~lPD~L~d-~~ 161 (223) |+.+.+ |++ |.+.. +....++|++ +.|++.++-.|..- + +.-|-.+.+ |. T Consensus 79 g~a~~~vsre~LD~~~P~W~~~~g~p~~~i~de~~pr~f~l~P~p~~~~~vel~~~r~P~a~~~~~~~dd~~~~i~~~y~ 158 (216) T protein:vir:27 79 GSAVRPLSREVLDAQYPEWPTMKGIPECFISNDLSPRVFWLFPAPDKEISIDAVVSRIPEAVYVLTQDDDTPVPLEEAYV 158 (216) T ss_pred CCceeeecHHHhcccCCCcCCCCCCceEEEecCCCceEEEEeccCCCCcEEEEEEEecCcchhhccCCCCCCCCcchhhh Confidence 555432 222 33332 2233366753 46777777667532 1 111212454 99 Q ss_pred HHHHHHHHHHHHhCcCCCcCCHHHHHHHHHHHHHHHH------HHHHHHhhcCccccc Q lcl|Aclame:pro 162 EEVAAGALERLFMQTGVSWSDPLRAQYFSVQFSEGIR------RAYRHTLATSPYSSY 213 (223) Q Consensus 162 eaI~~GAla~L~l~P~k~WsnPqlA~y~~~~F~dgir------~A~R~~~~~~~~~~~ 213 (223) ..|++=++.+-++.|+..=.||++|+-|.|.|.+++. .++.-+++.++-+++ T Consensus 159 ~~Lvdw~lyRa~skd~~~~~d~~rA~~h~q~F~~~lG~k~~ad~~~~~r~~~~~~~~~ 216 (216) T protein:vir:27 159 NPLVEWMLFRAFSKDAAGGAESGLAAQHYQSFVEQLGIKQGADSALYARKKVFNGGGV 216 (216) T ss_pred HHHHHHHHHHHhcCcCccccChHHHHHHHHHHHHHhCCchHHHhHHHHHHhhccCCCC Confidence 9999999999999999989999999999999998772 112222222333443 No 6 >protein:vir:823 Length: 216 # NCBI annotation: hypothetical protein # Family: family:all:1423 # MgeID: mge:16 # MgeName: VT2-Sa # Cross-refs: genbank:acc:NP_050556;genbank:gi:9633453;genbank:GeneID:1262282 Probab=98.01 E-value=7.1e-07 Score=54.30 Aligned_cols=175 Identities=13% Similarity=0.076 Sum_probs=110.4 Q ss_pred CCCHHHHHHHHHHhCCCC-----cHHHHHHHHHHHHHHHHHhCcceeeeccceecCCcceeeccCCCceeeeEEEeeecC Q lcl|Aclame:pro 37 MAELSDFLPYVRRHISGP-----LNIMMTDALSMAAVAFSRQSLVCRREVTVVPVAGKEIVLPYDKDDEECVHIIRISDD 111 (223) Q Consensus 37 M~~lddflp~V~~~~pg~-----p~~~~~~Alr~AAi~FCreS~vwr~~~~~~~v~~~~~~~~~~~~~~~iv~i~~it~~ 111 (223) |.++.+++-.++..+.-+ ++..+.+-|.+|..+.|-+..=-....+.+.+..|..-.++.. ...++.|.+. .+ T Consensus 1 ~~t~~~lI~r~~~~l~D~~~~rW~~~el~~~lNdAv~e~~l~rpda~~~~~~i~l~~Gt~q~~p~~-~~~lI~v~r~-~~ 78 (216) T protein:vir:82 1 MTTITEIIGRVNTQLVDPMMVRWPLQELCDYYNDAVRAVILARPDAGASLETISCVPGARQVLPDG-VIQLLDVICL-SD 78 (216) T ss_pred CccHHHHHHHHHHhhhcccccccChHHHHHHHHHHHHHHHhhcCCCCcceeeEeccccccccccch-hhhhhhhhhh-CC Confidence 999999999999887642 2677999999999999988743333334344555554433332 2333455554 25 Q ss_pred Ceeeec-----------------ccc--eEecc--CCeEEEecCC---CcEEEEEEEeeCCC---C--ccchHHHHH-HH Q lcl|Aclame:pro 112 NHELFV-----------------GRD--VDISS--GRSLRFACSP---GEVSVLYAVAPKAG---R--SQIPDELLT-WP 161 (223) Q Consensus 112 g~~L~~-----------------g~d--~~~~~--~~~i~~~~~~---~~l~V~~al~Ps~~---a--~~lPD~L~d-~~ 161 (223) |+.+.+ |++ |.+.. +....++|++ +.|++.++-.|..- + +.-|-.+.+ |. T Consensus 79 g~a~~~vsre~LD~~~P~W~~~~g~p~~~i~de~~pr~f~l~P~p~~~~~vel~~~r~P~a~~~~~~~dd~~~~i~~~y~ 158 (216) T protein:vir:82 79 GSAVRPLSREVLDAQYPEWPTMKGIPECFISNDLSPRVFWLFPAPDKEISIDAVVSRIPEAVYVLTQDDDTPVPLEEAYV 158 (216) T ss_pred CCceeeecHHHhcccCCCcCCCCCCceEEEecCCCceEEEEeccCCCCcEEEEEEEecCcchhhccCCCCCCCCcchhhh Confidence 555432 222 33332 2233366753 46777777667532 1 111212454 99 Q ss_pred HHHHHHHHHHHHhCcCCCcCCHHHHHHHHHHHHHHHH------HHHHHHhhcCccccc Q lcl|Aclame:pro 162 EEVAAGALERLFMQTGVSWSDPLRAQYFSVQFSEGIR------RAYRHTLATSPYSSY 213 (223) Q Consensus 162 eaI~~GAla~L~l~P~k~WsnPqlA~y~~~~F~dgir------~A~R~~~~~~~~~~~ 213 (223) ..|++=++.+-++.|+..=.||++|+-|.|.|.+++. .++.-+++.++-+++ T Consensus 159 ~~Lvdw~lyRa~skd~~~~~d~~rA~~h~q~F~~~lG~k~~ad~~~~~r~~~~~~~~~ 216 (216) T protein:vir:82 159 NPLVEWMLFRAFSKDAAGGAESGLAAQHYQSFVEQLGIKQGADSALYARKKVFNGGGV 216 (216) T ss_pred HHHHHHHHHHHhcCcCccccChHHHHHHHHHHHHHhCCchHHHhHHHHHHhhccCCCC Confidence 9999999999999999989999999999999998772 112222222333443 No 7 >protein:vir:3302 Length: 216 # NCBI annotation: hypothetical protein # Family: family:all:1423 # MgeID: mge:66 # MgeName: 933W # Cross-refs: genbank:acc:NP_049518;genbank:gi:9632524;genbank:GeneID:1262013 Probab=98.01 E-value=7.1e-07 Score=54.30 Aligned_cols=175 Identities=13% Similarity=0.076 Sum_probs=110.4 Q ss_pred CCCHHHHHHHHHHhCCCC-----cHHHHHHHHHHHHHHHHHhCcceeeeccceecCCcceeeccCCCceeeeEEEeeecC Q lcl|Aclame:pro 37 MAELSDFLPYVRRHISGP-----LNIMMTDALSMAAVAFSRQSLVCRREVTVVPVAGKEIVLPYDKDDEECVHIIRISDD 111 (223) Q Consensus 37 M~~lddflp~V~~~~pg~-----p~~~~~~Alr~AAi~FCreS~vwr~~~~~~~v~~~~~~~~~~~~~~~iv~i~~it~~ 111 (223) |.++.+++-.++..+.-+ ++..+.+-|.+|..+.|-+..=-....+.+.+..|..-.++.. ...++.|.+. .+ T Consensus 1 ~~t~~~lI~r~~~~l~D~~~~rW~~~el~~~lNdAv~e~~l~rpda~~~~~~i~l~~Gt~q~~p~~-~~~lI~v~r~-~~ 78 (216) T protein:vir:33 1 MTTITEIIGRVNTQLVDPMMVRWPLQELCDYYNDAVRAVILARPDAGASLETISCVPGARQVLPDG-VIQLLDVICL-SD 78 (216) T ss_pred CccHHHHHHHHHHhhhcccccccChHHHHHHHHHHHHHHHhhcCCCCcceeeEeccccccccccch-hhhhhhhhhh-CC Confidence 999999999999887642 2677999999999999988743333334344555554433332 2333455554 25 Q ss_pred Ceeeec-----------------ccc--eEecc--CCeEEEecCC---CcEEEEEEEeeCCC---C--ccchHHHHH-HH Q lcl|Aclame:pro 112 NHELFV-----------------GRD--VDISS--GRSLRFACSP---GEVSVLYAVAPKAG---R--SQIPDELLT-WP 161 (223) Q Consensus 112 g~~L~~-----------------g~d--~~~~~--~~~i~~~~~~---~~l~V~~al~Ps~~---a--~~lPD~L~d-~~ 161 (223) |+.+.+ |++ |.+.. +....++|++ +.|++.++-.|..- + +.-|-.+.+ |. T Consensus 79 g~a~~~vsre~LD~~~P~W~~~~g~p~~~i~de~~pr~f~l~P~p~~~~~vel~~~r~P~a~~~~~~~dd~~~~i~~~y~ 158 (216) T protein:vir:33 79 GSAVRPLSREVLDAQYPEWPTMKGIPECFISNDLSPRVFWLFPAPDKEISIDAVVSRIPEAVYVLTQDDDTPVPLEEAYV 158 (216) T ss_pred CCceeeecHHHhcccCCCcCCCCCCceEEEecCCCceEEEEeccCCCCcEEEEEEEecCcchhhccCCCCCCCCcchhhh Confidence 555432 222 33332 2233366753 46777777667532 1 111212454 99 Q ss_pred HHHHHHHHHHHHhCcCCCcCCHHHHHHHHHHHHHHHH------HHHHHHhhcCccccc Q lcl|Aclame:pro 162 EEVAAGALERLFMQTGVSWSDPLRAQYFSVQFSEGIR------RAYRHTLATSPYSSY 213 (223) Q Consensus 162 eaI~~GAla~L~l~P~k~WsnPqlA~y~~~~F~dgir------~A~R~~~~~~~~~~~ 213 (223) ..|++=++.+-++.|+..=.||++|+-|.|.|.+++. .++.-+++.++-+++ T Consensus 159 ~~Lvdw~lyRa~skd~~~~~d~~rA~~h~q~F~~~lG~k~~ad~~~~~r~~~~~~~~~ 216 (216) T protein:vir:33 159 NPLVEWMLFRAFSKDAAGGAESGLAAQHYQSFVEQLGIKQGADSALYARKKVFNGGGV 216 (216) T ss_pred HHHHHHHHHHHhcCcCccccChHHHHHHHHHHHHHhCCchHHHhHHHHHHhhccCCCC Confidence 9999999999999999989999999999999998772 112222222333443 No 8 >protein:vir:5111 Length: 234 # NCBI annotation: unknown # Family: family:all:1423 # MgeID: mge:114 # MgeName: PBC5 # Cross-refs: genbank:acc:NP_542268;genbank:gi:18071240;genbank:GeneID:929347 Probab=97.82 E-value=1.6e-06 Score=52.37 Aligned_cols=176 Identities=15% Similarity=0.103 Sum_probs=110.8 Q ss_pred CCCHHHHHHHHHHhCCCC-----cHHHHHHHHHHHHHHHHHhCcceeeecccee-cCCcceeeccCCC---ceeeeEEEe Q lcl|Aclame:pro 37 MAELSDFLPYVRRHISGP-----LNIMMTDALSMAAVAFSRQSLVCRREVTVVP-VAGKEIVLPYDKD---DEECVHIIR 107 (223) Q Consensus 37 M~~lddflp~V~~~~pg~-----p~~~~~~Alr~AAi~FCreS~vwr~~~~~~~-v~~~~~~~~~~~~---~~~iv~i~~ 107 (223) |.++.+++..++..+.-. +...+.+-|.+|..+.|-.-.=.....+.+. ++|....++.+-+ ..++..|.+ T Consensus 1 m~t~~~lI~r~~~~l~D~~~~rW~~~el~~~lNdAv~e~~l~rp~a~~~~~~i~l~~Gt~q~lP~d~~~~~~l~li~i~r 80 (234) T protein:vir:51 1 MPKASEIMRLAGIQLLDEDHIRWPLIELADWVNEGVKAIVLAKPSASSKSAAIQLVKGTHQTLPGTIDGKATLQLIGINR 80 (234) T ss_pred CccHHHHHHHHHHHhccccccccChHHHHHHHHHHHHHHHhhcCCCCccceeEeeccCCccccccccccchheehhhhhh Confidence 999999999999887742 3678889999999999977543333333333 4444444443311 223333332 Q ss_pred -e------ecCCeeeec-----------------ccc---------eEeccCCeEEEecCC---CcEEEEEEEeeCCC-- Q lcl|Aclame:pro 108 -I------SDDNHELFV-----------------GRD---------VDISSGRSLRFACSP---GEVSVLYAVAPKAG-- 149 (223) Q Consensus 108 -i------t~~g~~L~~-----------------g~d---------~~~~~~~~i~~~~~~---~~l~V~~al~Ps~~-- 149 (223) + ..+|+++++ |.+ |.-..+..++++|++ |.|.+.++..|..- T Consensus 81 n~~s~~~~~~~grav~~vsre~LD~~~P~W~~~tg~P~~~~v~~y~~d~~~p~~~~l~P~p~~~g~v~~~~~r~P~~v~~ 160 (234) T protein:vir:51 81 NLVSAAEPRQGLRAIRTCARDVLDAQEPNWHTASYVPFRKEVRQVIYDENLPTEFYVYPGNDGSGFVEAAFSFLPTSVKV 160 (234) T ss_pred hhccccccccCcceeeecCHHHhcccCCCccccCCCCchhhhhhhhccCCCCeEEEEeccCCCCceEEEEEEeecchhhh Confidence 1 123455442 332 233445568888854 46888888778531 Q ss_pred ---Cccc-------hHHHHH-HHHHHHHHHHHHHHhCcCCCcCCHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCc Q lcl|Aclame:pro 150 ---RSQI-------PDELLT-WPEEVAAGALERLFMQTGVSWSDPLRAQYFSVQFSEGIRRAYRHTLATSPYSSYRNPVR 218 (223) Q Consensus 150 ---a~~l-------PD~L~d-~~eaI~~GAla~L~l~P~k~WsnPqlA~y~~~~F~dgir~A~R~~~~~~~~~~~rnpvR 218 (223) ++.. +-.|-+ |...|++=++.+=++ ++.+=.||++|+-|.|.|.+++. -+-..+ .-.||-+ T Consensus 161 ~~~~d~~~~a~~~~~~~i~~~y~~~Lvdw~lyRa~s-kD~e~~d~~rA~~h~q~F~~~lG--~k~~~d-----~~~~pn~ 232 (234) T protein:vir:51 161 ANGADPEKIASWDIDVGLPEPYSVPLLDYVLYRCHQ-KDDTAADLGKATSHYQLFATAVG--IKVQSE-----GTSNPNR 232 (234) T ss_pred hhcCCccccccccccCCccchhhHHHHHHHhhhhcC-ccccccchHHHHHHHHHHHHHhC--Ccchhh-----hhccccc Confidence 1111 123555 999999999999988 88888999999999999999883 111112 2235555 Q ss_pred cc Q lcl|Aclame:pro 219 RQ 220 (223) Q Consensus 219 ~~ 220 (223) ++ T Consensus 233 r~ 234 (234) T protein:vir:51 233 RR 234 (234) T ss_pred cC Confidence 55 No 9 >protein:vir:8326 Length: 201 # NCBI annotation: gp43 # Family: family:all:3238 # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817894;genbank:gi:29566327;genbank:GeneID:1259522 Probab=88.31 E-value=0.0072 Score=32.33 Aligned_cols=145 Identities=19% Similarity=0.200 Sum_probs=62.4 Q ss_pred CCCHH--HHHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHhCcceeee----ccceecC--CcceeeccCCCceeeeEEE Q lcl|Aclame:pro 37 MAELS--DFLPYVRRH--ISGPLNIMMTDALSMAAVAFSRQSLVCRRE----VTVVPVA--GKEIVLPYDKDDEECVHII 106 (223) Q Consensus 37 M~~ld--dflp~V~~~--~pg~p~~~~~~Alr~AAi~FCreS~vwr~~----~~~~~v~--~~~~~~~~~~~~~~iv~i~ 106 (223) |..+. ++.+.++-+ +...-..++.+|...+++++|. |+-+ ++...+. |+....+++. .++.|. T Consensus 1 m~eL~P~dl~~~~~g~l~a~d~~~Q~aLdAA~aavRr~CG----WHV~Pvv~dd~v~ldg~G~~vL~LPT~---rLvsV~ 73 (201) T protein:vir:83 1 MAELSEADVESFTRGRLLANDGETKKMLDAALLTARRYCG----WKVTPVVTDDVMVLDGPDSRILNLPTR---KLVTLS 73 (201) T ss_pred CccccchhcchhhcCccccCChHHHHHHHHHHHHHHHHhC----ccceeeeeeeeEEEcCCCCeeEEcCCc---ccceeE Confidence 44332 233333322 2234578899999999999997 5443 2222233 4444444432 367889 Q ss_pred eeecCCeeeecccceEeccCCeEEEecCC------------C---cEEEEEEE----ee--------------------- Q lcl|Aclame:pro 107 RISDDNHELFVGRDVDISSGRSLRFACSP------------G---EVSVLYAV----AP--------------------- 146 (223) Q Consensus 107 ~it~~g~~L~~g~d~~~~~~~~i~~~~~~------------~---~l~V~~al----~P--------------------- 146 (223) +++.+|.++-. +++.-...+++.+.+.+ + .|+|.+.- .| T Consensus 74 SVte~G~~i~~-~~~~~s~~G~~~~~~~~~ll~~r~gg~w~~~~~~V~VT~tHGy~~~pa~d~~~vv~~a~~~~~q~~~t 152 (201) T protein:vir:83 74 ELFERGNPVDL-SKVRWSAGGPPGSSSRPIAVRKRNGGWWTGEYQGIEVKMTHGYTEDEAADWRLAVLSMVDQMSQTLAS 152 (201) T ss_pred EEeeCCEeccC-CceeeecCCcccccccccceeeecCcCCcCccceEEEEEecCCCCCchhHHHHHHHHHHHHHHHhhhc Confidence 99999977642 23333333322222211 1 23332210 01 Q ss_pred -----CCCCccchHHHHHHHHHHHHHHHHHHHhCcCCCcCCHHHHHHHHHHHHHHHHHHHHHHhhc-Ccccccc Q lcl|Aclame:pro 147 -----KAGRSQIPDELLTWPEEVAAGALERLFMQTGVSWSDPLRAQYFSVQFSEGIRRAYRHTLAT-SPYSSYR 214 (223) Q Consensus 147 -----s~~a~~lPD~L~d~~eaI~~GAla~L~l~P~k~WsnPqlA~y~~~~F~dgir~A~R~~~~~-~~~~~~r 214 (223) +....+++|.=++|+|+|+.-|+..|++- ++.-.|- .|-..|- T Consensus 153 G~~s~~l~~~~v~~v~~~w~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~ 201 (201) T protein:vir:83 153 GRGELDLLSKKVDDVTYRWGDPYADSAQQALFSV-------------------------TSVFDNFTLPCVEFL 201 (201) T ss_pred ccccccceeeeeeccchhhccccchhHHHHHHHH-------------------------HHHHhccccchhhcC Confidence 00112233333344444444444444332 1111110 1111111 No 10 >protein:vir:8841 Length: 208 # NCBI annotation: constituent protein # Family: family:all:6621 # MgeID: mge:158 # MgeName: PaP3 # Cross-refs: genbank:acc:NP_775249;genbank:gi:27476047;genbank:GeneID:2700595 Probab=82.99 E-value=0.072 Score=26.84 Aligned_cols=175 Identities=15% Similarity=0.173 Sum_probs=104.0 Q ss_pred hhcCCCHHHHHHHHHHhCCCC-cH-HHHHHHHHHHHHHHHHhCcceeeeccce-ecCCcceeeccCCCceeeeEEEeeec Q lcl|Aclame:pro 34 LNSMAELSDFLPYVRRHISGP-LN-IMMTDALSMAAVAFSRQSLVCRREVTVV-PVAGKEIVLPYDKDDEECVHIIRISD 110 (223) Q Consensus 34 ~~~M~~lddflp~V~~~~pg~-p~-~~~~~Alr~AAi~FCreS~vwr~~~~~~-~v~~~~~~~~~~~~~~~iv~i~~it~ 110 (223) |-+..++++|.-.|..++-.- +. ..+-+-|..|-.+|=+.-++=-.+.+.. .+.++...++.+ - +++..|+. T Consensus 1 ~~~i~~Y~~L~~~~~~~l~R~Dlt~~~~p~FI~lAE~~inr~Lr~~~~e~~vtl~~~~g~~~LP~D---f--~e~r~i~~ 75 (208) T protein:vir:88 1 MATINNVTDLAIAAIQWSDRQDLTQELLMLFIGNTTDRLNRLLRVRENEHFETLMAFGGGIEIPEH---F--VALRSITG 75 (208) T ss_pred CCCcCCHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHhcccccceEEEEEecCceeeCChh---H--HHHHHHhh Confidence 999999999999999988751 11 2355667777777766655444444433 344555543332 1 22223332 Q ss_pred ----CCeeeec----------------c-cceEeccCCeEEEecC--CCc-EE-EEEEEeeCCCCccchHHHH-HHHHHH Q lcl|Aclame:pro 111 ----DNHELFV----------------G-RDVDISSGRSLRFACS--PGE-VS-VLYAVAPKAGRSQIPDELL-TWPEEV 164 (223) Q Consensus 111 ----~g~~L~~----------------g-~d~~~~~~~~i~~~~~--~~~-l~-V~~al~Ps~~a~~lPD~L~-d~~eaI 164 (223) +|..|.. | .-|....+|.|.|.|. .+. ++ ++.+--|..+.+.==-+|. .+.|.- T Consensus 76 ~~~~~g~~l~~v~~~~~~~~~~~~~~~g~p~~yti~g~~i~~~P~p~~~~~~~i~Yy~~iP~LS~~n~tNwLl~~aPD~Y 155 (208) T protein:vir:88 76 DALIGGRTLQYITQDIFSHYVNYNYQPQGVTYYTRLGNFWRVYPVVPDGAPFIVNYWTVLPELSLDNPTTWALTKYPQIY 155 (208) T ss_pred cCCCCCceecccCHHHhhhhhhhccCccccceEEEEcCeEEEeeecCCCceEEEEeeeccCCCCCCCchhHHhhcchhHH Confidence 2333321 1 1255556799999983 232 33 3444445544333225777 499999 Q ss_pred HHHHHHHHHhCcCCCcCCHHHHHHHHHHHHHHHH----HHHHHHhhcCcccccccCCc Q lcl|Aclame:pro 165 AAGALERLFMQTGVSWSDPLRAQYFSVQFSEGIR----RAYRHTLATSPYSSYRNPVR 218 (223) Q Consensus 165 ~~GAla~L~l~P~k~WsnPqlA~y~~~~F~dgir----~A~R~~~~~~~~~~~rnpvR 218 (223) ..|+++...+=. .|++.++.|.++|..++. ..-+....+++.. .|.=.| T Consensus 156 Ly~~L~ea~~f~----~D~~ra~~~~~~~~~al~~L~~~d~~~~~~~~~l~-i~~~~~ 208 (208) T protein:vir:88 156 LYGVLEQIYLYT----MDEERSMFWGQKLERAVMELQNEENAADFASSRLA-IKDIER 208 (208) T ss_pred HHHHHHHHHhcc----cCHhHHHHHHHHHHHHHHHHHhhhhhHHhcCCcee-eecccC Confidence 999999998875 689999999999988774 2233333444432 122222 No 11 >protein:vir:8104 Length: 170 # NCBI annotation: gp8 # Family: family:all:3238 # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817685;genbank:gi:29566116;genbank:GeneID:1259310 Probab=80.79 E-value=0.092 Score=26.28 Aligned_cols=153 Identities=12% Similarity=-0.030 Sum_probs=74.1 Q ss_pred HH-HhCCCCcHHHHHHHHHHHHHHHHHhCcc-eeeeccce-ecCCcceeeccCCCceeeeEEEeeecCCeeeecccceEe Q lcl|Aclame:pro 47 VR-RHISGPLNIMMTDALSMAAVAFSRQSLV-CRREVTVV-PVAGKEIVLPYDKDDEECVHIIRISDDNHELFVGRDVDI 123 (223) Q Consensus 47 V~-~~~pg~p~~~~~~Alr~AAi~FCreS~v-wr~~~~~~-~v~~~~~~~~~~~~~~~iv~i~~it~~g~~L~~g~d~~~ 123 (223) ++ +.++.--..++.+|...++++||....- -..+.+.. +-.|+....+++- .++.|.+++.||.+|.....+.- T Consensus 1 ~~~~~a~~~~~q~~l~aA~a~vR~~cGwhv~P~v~d~t~~ldg~G~~vl~LPt~---pvvsV~sV~~~G~~l~~~~~~~~ 77 (170) T protein:vir:81 1 MRGQFADNTEAQAAIDAVLAAARRWCGWHVSPVIIDDVMEVDGPGGRVLSLPTL---NLVSVKSVVELGYALDVSTLDRS 77 (170) T ss_pred CcccccCchHHHHHHHHHHHHHHHHhCCcccceecccEEEEeCCCCeeEECCCC---cceeeEEEEECCeeecCccceee Confidence 22 2345556788899999999999985541 12222322 2334444434442 26888899999999876664443 Q ss_pred ccCCeEEEec------CCCcEEEEEEEeeCCCCccchHHHHHHHHHHHHHHHHHHHhCcCCCcCC-HHHHHHHHHHHHHH Q lcl|Aclame:pro 124 SSGRSLRFAC------SPGEVSVLYAVAPKAGRSQIPDELLTWPEEVAAGALERLFMQTGVSWSD-PLRAQYFSVQFSEG 196 (223) Q Consensus 124 ~~~~~i~~~~------~~~~l~V~~al~Ps~~a~~lPD~L~d~~eaI~~GAla~L~l~P~k~Wsn-PqlA~y~~~~F~dg 196 (223) ...+-|+ .+ -.+.|+| +..==-+..+.||++.+ ++.=++.+.+.-.+.-+.. -+...+--+-|..| T Consensus 78 ~~~glL~-r~~G~~~~~~~~V~V--T~tHGy~~~~apd~~~~----vi~~~a~r~~~s~~~~~l~~~~~~~vs~~~~~~~ 150 (170) T protein:vir:81 78 RRKGTLT-KPYGRWTARDGAIVV--TATHGFTETEAADWRRA----VVQLVGRRAQTSRPSADLKRKKVDDVEYEWFETA 150 (170) T ss_pred cCCceEE-ecCCccccccceEEE--EEEeCCCCCccchHHHH----HHHHHHHHhhccCCcccceeeeccceeeeecccc Confidence 3444333 22 1234444 44334455678876643 2222222222211111100 01111100001111 Q ss_pred -------HHHHHHHHhhcCc Q lcl|Aclame:pro 197 -------IRRAYRHTLATSP 209 (223) Q Consensus 197 -------ir~A~R~~~~~~~ 209 (223) .+.-.|+++..+| T Consensus 151 ~s~~~~~~~iL~~Yrl~~~p 170 (170) T protein:vir:81 151 VSVDAELSAVFSPFRILPSP 170 (170) T ss_pred cccCHHHHHhhhhcccCCCC Confidence 2224567778777 No 12 >protein:vir:81255 Length: 180 # NCBI annotation: gp8 # Family: family:all:3238 # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456738;genbank:gi:157168381;uniprot:Q9MBJ7;genbank:GeneID:5580378 Probab=45.45 E-value=0.77 Score=21.21 Aligned_cols=158 Identities=16% Similarity=0.106 Sum_probs=77.0 Q ss_pred CCCHHHHHHHHHHhCCCC------cHHHHHHHHHHHHHHHHHhCcce-eeeccce-ecCCcceeeccCCCceeeeEEEee Q lcl|Aclame:pro 37 MAELSDFLPYVRRHISGP------LNIMMTDALSMAAVAFSRQSLVC-RREVTVV-PVAGKEIVLPYDKDDEECVHIIRI 108 (223) Q Consensus 37 M~~lddflp~V~~~~pg~------p~~~~~~Alr~AAi~FCreS~vw-r~~~~~~-~v~~~~~~~~~~~~~~~iv~i~~i 108 (223) |-..-.+.|.+.+..++= -...+.+|...++++||-.- ++ -.+.+.. +-.|+....+++ ..++.|.++ T Consensus 1 ~~~p~~l~p~~~~~~~~g~~~~~~~~q~~l~aA~aavRr~cGwh-v~pv~~~t~~ldg~G~~~l~LPt---~~vvsV~sV 76 (180) T protein:vir:81 1 MQPPHGLTPEILRTYPGGHLLSKDLTQEHVDAVVATVRKLCGWH-VFPVATTEYSFPWRGDPEFLVPT---KRLVSVESV 76 (180) T ss_pred CCCCccCCcchhhhhhccccCCchhhHHHHHHHHHHHHHHhCCc-ccceeeeEEEEecCCCeeEeCCC---CcceeeeeE Confidence 666666667776666632 35689999999999999732 22 1222322 233444443443 236788889 Q ss_pred ecCCeeeecccceEe---ccCCeEEEec---C--CCcEEEEEEEeeCCCCccchHHHHHHHHHHHHHHHHHHHhCcCCCc Q lcl|Aclame:pro 109 SDDNHELFVGRDVDI---SSGRSLRFAC---S--PGEVSVLYAVAPKAGRSQIPDELLTWPEEVAAGALERLFMQTGVSW 180 (223) Q Consensus 109 t~~g~~L~~g~d~~~---~~~~~i~~~~---~--~~~l~V~~al~Ps~~a~~lPD~L~d~~eaI~~GAla~L~l~P~k~W 180 (223) +.||..+ +++.+.- ..+|.|+-.. . .+.|+|.+. -+=+++|+.+. +| .=++++-...+++-= T Consensus 77 ~~dG~~v-~~~~~~~~~~~~~G~l~r~~G~~~rg~~~V~Vt~~----hGye~vP~~~a----Vi-~~~a~ra~~s~~~~v 146 (180) T protein:vir:81 77 TCGDLSI-PNEDIVFYPYGEVNLLRRVHGTPWRVARPMTVTMT----HGYEDAPGLVG----VI-AQMLTRAFTSTGGGD 146 (180) T ss_pred EECCeee-CCccceecccCCCCeeEecCCccccccceEEEEEE----eCCCCCchHHH----HH-HHHHHHhcccccccc Confidence 9999877 2222111 1234332221 1 234555443 34477887652 22 334444455554322 Q ss_pred CCHHHHH-----HHHHHH-HHHHHHHHHHHhhcC Q lcl|Aclame:pro 181 SDPLRAQ-----YFSVQF-SEGIRRAYRHTLATS 208 (223) Q Consensus 181 snPqlA~-----y~~~~F-~dgir~A~R~~~~~~ 208 (223) ++=+.+. ...--+ ....+.--|+++.+. T Consensus 147 ~~~tvG~~S~~~~~~~~~~~~e~aiLdrYrl~~~ 180 (180) T protein:vir:81 147 GNLTVGNMSYGLSTGITPKSSEWLIIDQYRLHPV 180 (180) T ss_pred ccceecceeeccccCCCccHHHHHHHHhhhccCC Confidence 2111111 000000 011233345555544 No 13 >protein:vir:94538 Length: 125 # NCBI annotation: putative head to tail joining # Family: family:all:180 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223893;genbank:gi:62327105;genbank:GeneID:5075554 Probab=23.72 E-value=2.3 Score=18.63 Aligned_cols=113 Identities=13% Similarity=0.113 Sum_probs=54.3 Q ss_pred CCC--------HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCcceeeeccceecCCcceeeccCCCceeeeEEEee Q lcl|Aclame:pro 37 MAE--------LSDFLPYVRRHISGPLNIMMTDALSMAAVAFSRQSLVCRREVTVVPVAGKEIVLPYDKDDEECVHIIRI 108 (223) Q Consensus 37 M~~--------lddflp~V~~~~pg~p~~~~~~Alr~AAi~FCreS~vwr~~~~~~~v~~~~~~~~~~~~~~~iv~i~~i 108 (223) |++ +|+|.-.+... +.--...+..|+..++....++..... ++.+|..--. | .+..+ T Consensus 1 Ma~~~~i~~~Gld~l~~~L~~~-~~~~~~~v~~al~~~a~~i~~~ak~~a------p~~tG~L~~s-------I-~~~~~ 65 (125) T protein:vir:94 1 MANDFNIKFKGVDKLLDEFDIS-RKELVPYSVEAMKTSLSRAVEKSKGLA------RVDTGYMRNN-------I-QQDEV 65 (125) T ss_pred CCCceeeeehhHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHhhC------CCCChhhhhh-------c-eecce Confidence 555 67777666544 333345567788888888887754221 1222210000 0 00000 Q ss_pred ecCCeeeecccceEeccCCeEEEecCCCcEEEEEEEeeCCCCccchHHHH-HHHHHHHHHHHHHHHhCcCCCcCCHHHHH Q lcl|Aclame:pro 109 SDDNHELFVGRDVDISSGRSLRFACSPGEVSVLYAVAPKAGRSQIPDELL-TWPEEVAAGALERLFMQTGVSWSDPLRAQ 187 (223) Q Consensus 109 t~~g~~L~~g~d~~~~~~~~i~~~~~~~~l~V~~al~Ps~~a~~lPD~L~-d~~eaI~~GAla~L~l~P~k~WsnPqlA~ 187 (223) .. ..+.+++.+ -|.. +=..+ +||+. -||++||-.|.... T Consensus 66 ~~-----------------------~~~~~~~~v--~~~~-----~Ya~~vEfGT~----------~~~a~Pfl~pa~~~ 105 (125) T protein:vir:94 66 KE-----------------------EHGVVTGRY--VARA-----DYSSYNEYGTY----------RMSAQPFMAPSVAA 105 (125) T ss_pred ec-----------------------cCCcEEEEe--eCCC-----Cccceeecccc----------cCCCCcccchhHHH Confidence 00 011111111 1110 00112 44432 48999999998654 Q ss_pred ---HHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 188 ---YFSVQFSEGIRRAYRHT 204 (223) Q Consensus 188 ---y~~~~F~dgir~A~R~~ 204 (223) .+.+.+.+.|+.|.+.+ T Consensus 106 ~~~~~~~~l~~~l~~a~k~~ 125 (125) T protein:vir:94 106 MTPFFYKAVRDALNKAAKFS 125 (125) T ss_pred HHHHHHHHHHHHHHHHhccC Confidence 45666666777776666 Done!