Virfam_CNT_anal:NC_021540

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : JA-1 | Genbank acc : NC_021540

Category to which the Query Phage was assigned :

The queried phage was recognized as a Podoviridae of Type3 (Read more about that Type)
Note that only the Adaptor was detected unambiguously

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 79

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	59	lcl\|NC_021540.1_cdsid_YP_008126822.1	HHsearch (proba=100.00%)
Portal	62	lcl\|NC_021540.1_cdsid_YP_008126825.1	HHsearch (proba=100.00%)
TermL	67	lcl\|NC_021540.1_cdsid_YP_008126830.1	Blast (e-value=1e-126)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	66	lcl\|NC_021540.1_cdsid_YP_008126829.1	HHsearch (proba=100.00%)
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:95875 protein:vir:97433 protein:vir:94494	N4 92 88	45 % 15 % 15 %
Portal	protein:vir:95821 protein:vir:8846 protein:vir:105429	N4 PaP3 Sf6	45 % 16 % 15 %
TermL	protein:vir:95873 protein:vir:103223 protein:vir:7851	N4 JK06 CJW1	43 % 20 % 19 %
Ad3	protein:vir:95880 protein:vir:5111 protein:vir:105573	N4 PBC5 F116	29 % 18 % 16 %