Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 48 lcl|NC_021300.1_cdsid_YP_008051118.1 HHsearch (proba=100.00%)
Portal 51 lcl|NC_021300.1_cdsid_YP_008051121.1 HHsearch (proba=100.00%)
TermL 52 lcl|NC_021300.1_cdsid_YP_008051122.1 Blast (e-value=9e-92)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 46 lcl|NC_021300.1_cdsid_YP_008051116.1 HHsearch (proba=100.00%)
Hc3 40 lcl|NC_021300.1_cdsid_YP_008051110.1 HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ad3<->Hc3 6 2


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:95451
protein:vir:3136
protein:vir:80180
PA11
VpV262
Pf-WMP3
36 %
24 %
16 %
Portal protein:vir:95449
protein:vir:3139
protein:vir:80165
PA11
VpV262
Pf-WMP3
34 %
26 %
16 %
TermL protein:vir:95431
protein:vir:2600
protein:vir:3140
PA11
SIO1
VpV262
37 %
36 %
35 %
Ad3 protein:vir:95463
protein:vir:3130
protein:vir:2626
PA11
VpV262
SIO1
28 %
26 %
23 %
Hc3 protein:vir:2625
protein:vir:95475
protein:vir:3133
SIO1
PA11
VpV262
27 %
26 %
24 %