Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : HTVC019P | Genbank acc : NC_020483

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 59

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	31	lcl\|NC_020483.1_cdsid_YP_007517838.1	HHsearch (proba=100.00%)
Portal	28	lcl\|NC_020483.1_cdsid_YP_007517835.1	HHsearch (proba=100.00%)
TermL	58	lcl\|NC_020483.1_cdsid_YP_007517865.1	Blast (e-value=1e-143)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	32	lcl\|NC_020483.1_cdsid_YP_007517839.1	HHsearch (proba=100.00%)
Hc3	33	lcl\|NC_020483.1_cdsid_YP_007517840.1	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:94711 protein:vir:10450 protein:vir:8885	K1F phiA1122 gh-1	36 % 35 % 35 %
Portal	protein:vir:10447 protein:vir:2198 protein:vir:94709	phiA1122 T7 K1F	42 % 42 % 41 %
TermL	protein:vir:94726 protein:vir:10462 protein:vir:3376	K1F phiA1122 T3	49 % 47 % 47 %
Ad3	protein:vir:78741 protein:vir:8886 protein:vir:3365	Syn5 gh-1 T3	38 % 35 % 35 %
Hc3	protein:vir:10452 protein:vir:2203 protein:vir:94713	phiA1122 T7 K1F	32 % 32 % 31 %