Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Syn5 | Genbank acc : NC_009531 | Aclame index mge :1856

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 61

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	39	lcl\|Aclame:protein:vir:78739\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	37	lcl\|Aclame:protein:vir:78696\|NCBI_annot:head	HHsearch (proba=100.00%)
TermL	60	lcl\|Aclame:protein:vir:78718\|NCBI_annot:DNA	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	40	lcl\|Aclame:protein:vir:78741\|NCBI_annot:tail	HHsearch (proba=100.00%)
Hc3	41	lcl\|Aclame:protein:vir:78703\|NCBI_annot:tail	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:78739 protein:vir:1781 protein:vir:100057	Syn5 P60 P-SSP7	100 % 67 % 42 %
Portal	protein:vir:78696 protein:vir:1785 protein:vir:100039	Syn5 P60 P-SSP7	100 % 62 % 51 %
TermL	protein:vir:78718 protein:vir:100065 protein:vir:94726	Syn5 P-SSP7 K1F	100 % 60 % 44 %
Ad3	protein:vir:78741 protein:vir:100027 protein:vir:1780	Syn5 P-SSP7 P60	100 % 40 % 40 %
Hc3	protein:vir:78703 protein:vir:1778 protein:vir:100022	Syn5 P60 P-SSP7	100 % 42 % 29 %