Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : S16 | Genbank acc : NC_020416

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 268

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	166	lcl\|NC_020416.1_cdsid_YP_007501205.1	HHsearch (proba=100.00%)
Portal	160	lcl\|NC_020416.1_cdsid_YP_007501199.1	HHsearch (proba=100.00%)
TermL	156	lcl\|NC_020416.1_cdsid_YP_007501195.1	Blast (e-value=0)
MTP	159	lcl\|NC_020416.1_cdsid_YP_007501198.1	Blast (e-value=7e-85)
Sheath	157	lcl\|NC_020416.1_cdsid_YP_007501196.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	152	lcl\|NC_020416.1_cdsid_YP_007501191.1	HHsearch (proba=100.00%)
Hc2	153	lcl\|NC_020416.1_cdsid_YP_007501192.1	HHsearch (proba=100.00%)
Tc2	154	lcl\|NC_020416.1_cdsid_YP_007501193.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:107947 protein:vir:7214 protein:vir:6901	JS98 T4 RB69	85 % 83 % 83 %
Portal	protein:vir:6896 protein:vir:103458 protein:vir:7208	RB69 RB32 T4	81 % 80 % 80 %
TermL	protein:vir:103455 protein:vir:7202 protein:vir:6893	RB32 T4 RB69	82 % 82 % 82 %
MTP	protein:vir:108048 protein:vir:6895 protein:vir:103457	JS98 RB69 RB32	87 % 78 % 76 %
Sheath	protein:vir:108052 protein:vir:103456 protein:vir:7206	JS98 RB32 T4	78 % 77 % 77 %
Ad2	protein:vir:103451 protein:vir:7198 protein:vir:6889	RB32 T4 RB69	75 % 75 % 71 %
Hc2	protein:vir:103452 protein:vir:7199 protein:vir:6890	RB32 T4 RB69	75 % 75 % 75 %
Tc2	protein:vir:103453 protein:vir:7200 protein:vir:6891	RB32 T4 RB69	69 % 69 % 67 %