Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : vB_CskP_GAP227 | Genbank acc : NC_020078

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 49

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	36	lcl\|NC_020078.1_cdsid_YP_007348355.1	HHsearch (proba=100.00%)
Portal	34	lcl\|NC_020078.1_cdsid_YP_007348353.1	HHsearch (proba=100.00%)
TermL	45	lcl\|NC_020078.1_cdsid_YP_007348364.1	Blast (e-value=1e-117)
MTP	46	lcl\|NC_020078.1_cdsid_YP_007348365.1	Blast (e-value=1e-09)
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	37	lcl\|NC_020078.1_cdsid_YP_007348356.1	HHsearch (proba=100.00%)
Hc3	38	lcl\|NC_020078.1_cdsid_YP_007348357.1	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:97031 protein:vir:7019 protein:vir:105645	K1-5 SP6 K1E	28 % 28 % 27 %
Portal	protein:vir:94709 protein:vir:94572 protein:vir:10447	K1F Berlin phiA1122	29 % 28 % 28 %
TermL	protein:vir:103312 protein:vir:7028 protein:vir:105656	Era103 SP6 K1E	41 % 41 % 41 %
Ad3	protein:vir:1780 protein:vir:78741 protein:vir:3365	P60 Syn5 T3	26 % 25 % 25 %
Hc3	protein:vir:105647 protein:vir:80253 protein:vir:97014	K1E LKA1 K1-5	21 % 20 % 20 %