Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 17 lcl|NC_019520.1_cdsid_YP_007006600.1 HHsearch (proba=100.00%)
Portal 15 lcl|NC_019520.1_cdsid_YP_007006598.1 HHsearch (proba=100.00%)
TermL 26 lcl|NC_019520.1_cdsid_YP_007006609.1 Blast (e-value=1e-119)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 18 lcl|NC_019520.1_cdsid_YP_007006601.1 HHsearch (proba=100.00%)
Hc3 19 lcl|NC_019520.1_cdsid_YP_007006602.1 HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:103323
protein:vir:97031
protein:vir:105645
Era103
K1-5
K1E
28 %
27 %
26 %
Portal protein:vir:100039
protein:vir:105641
protein:vir:96988
P-SSP7
K1E
K1-5
29 %
28 %
28 %
TermL protein:vir:80218
protein:vir:7028
protein:vir:105656
LKA1
SP6
K1E
39 %
39 %
39 %
Ad3 protein:vir:78741
protein:vir:100027
protein:vir:6325
Syn5
P-SSP7
phiKMV
28 %
27 %
27 %
Hc3 protein:vir:8887
protein:vir:80253
protein:vir:94713
gh-1
LKA1
K1F
21 %
20 %
20 %