Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiKT | Genbank acc : NC_019520

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 31

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	17	lcl\|NC_019520.1_cdsid_YP_007006600.1	HHsearch (proba=100.00%)
Portal	15	lcl\|NC_019520.1_cdsid_YP_007006598.1	HHsearch (proba=100.00%)
TermL	26	lcl\|NC_019520.1_cdsid_YP_007006609.1	Blast (e-value=1e-119)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	18	lcl\|NC_019520.1_cdsid_YP_007006601.1	HHsearch (proba=100.00%)
Hc3	19	lcl\|NC_019520.1_cdsid_YP_007006602.1	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:103323 protein:vir:97031 protein:vir:105645	Era103 K1-5 K1E	28 % 27 % 26 %
Portal	protein:vir:100039 protein:vir:105641 protein:vir:96988	P-SSP7 K1E K1-5	29 % 28 % 28 %
TermL	protein:vir:80218 protein:vir:7028 protein:vir:105656	LKA1 SP6 K1E	39 % 39 % 39 %
Ad3	protein:vir:78741 protein:vir:100027 protein:vir:6325	Syn5 P-SSP7 phiKMV	28 % 27 % 27 %
Hc3	protein:vir:8887 protein:vir:80253 protein:vir:94713	gh-1 LKA1 K1F	21 % 20 % 20 %