Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 175 lcl|NC_019399.1_cdsid_YP_006986726.1 HHsearch (proba=100.00%)
Portal 170 lcl|NC_019399.1_cdsid_YP_006986721.1 HHsearch (proba=100.00%)
TermL 167 lcl|NC_019399.1_cdsid_YP_006986718.1 Blast (e-value=0)
MTP 169 lcl|NC_019399.1_cdsid_YP_006986720.1 Blast (e-value=3e-95)
Sheath 168 lcl|NC_019399.1_cdsid_YP_006986719.1 HHsearch (proba=100.00%)
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 163 lcl|NC_019399.1_cdsid_YP_006986714.1 HHsearch (proba=100.00%)
Hc2 164 lcl|NC_019399.1_cdsid_YP_006986715.1 HHsearch (proba=100.00%)
Tc2 165 lcl|NC_019399.1_cdsid_YP_006986716.1 HHsearch (proba=100.00%)
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:103463
protein:vir:7214
protein:vir:6901
RB32
T4
RB69
99 %
98 %
95 %
Portal protein:vir:7208
protein:vir:103458
protein:vir:6896
T4
RB32
RB69
100 %
99 %
89 %
TermL protein:vir:103455
protein:vir:7202
protein:vir:6893
RB32
T4
RB69
99 %
99 %
90 %
MTP protein:vir:7207
protein:vir:103457
protein:vir:6895
T4
RB32
RB69
100 %
99 %
88 %
Sheath protein:vir:103456
protein:vir:7206
protein:vir:6894
RB32
T4
RB69
99 %
98 %
83 %
Ad2 protein:vir:103451
protein:vir:7198
protein:vir:6889
RB32
T4
RB69
99 %
99 %
85 %
Hc2 protein:vir:103452
protein:vir:7199
protein:vir:6890
RB32
T4
RB69
99 %
98 %
88 %
Tc2 protein:vir:7200
protein:vir:103453
protein:vir:6891
T4
RB32
RB69
100 %
99 %
76 %