Query lcl|NC_019399.1_cdsid_YP_006986714.1 [gene=D862_gp116] [protein=neck protein] [protein_id=YP_006986714.1] [location=91256..92185] Match_columns 309 No_of_seqs 35 out of 40 Neff 4.5 Searched_HMMs 1612 Date Thu Nov 7 15:57:32 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_163 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_163_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:7198 Length: 309 # 100.0 4E-170 3E-173 949.0 24.1 309 1-309 1-309 (309) 2 protein:vir:103451 Length: 309 100.0 8E-170 5E-173 947.7 24.7 309 1-309 1-309 (309) 3 protein:vir:6889 Length: 308 # 100.0 3E-161 2E-164 900.6 25.6 308 1-309 1-308 (308) 4 protein:vir:107900 Length: 311 100.0 3E-158 2E-161 883.9 23.0 307 1-309 1-311 (311) 5 protein:vir:81013 Length: 310 100.0 5E-155 3E-158 866.7 26.6 306 1-309 1-310 (310) 6 protein:vir:6589 Length: 310 # 100.0 5E-155 3E-158 866.7 26.6 306 1-309 1-310 (310) 7 protein:vir:106428 Length: 306 100.0 6E-151 4E-154 844.0 26.6 302 1-309 2-306 (306) 8 protein:vir:101857 Length: 307 100.0 3E-149 2E-152 835.0 24.9 302 1-309 1-307 (307) 9 protein:vir:101153 Length: 307 100.0 3E-149 2E-152 835.0 24.9 302 1-309 1-307 (307) 10 protein:vir:100534 Length: 314 100.0 1E-148 7E-152 831.8 26.4 303 1-309 1-314 (314) 11 protein:vir:98189 Length: 307 100.0 2E-148 1E-151 830.0 24.0 300 1-307 1-307 (307) 12 protein:vir:5657 Length: 307 # 100.0 3E-147 2E-150 823.5 24.8 303 1-309 1-307 (307) 13 protein:vir:106985 Length: 276 100.0 2E-126 1E-129 709.9 21.3 272 3-309 1-276 (276) 14 protein:vir:104585 Length: 268 100.0 7E-122 5E-125 684.7 18.9 262 1-309 1-268 (268) 15 protein:vir:104694 Length: 281 100.0 1E-117 7E-121 661.8 20.1 260 3-309 1-281 (281) 16 protein:vir:103004 Length: 268 100.0 1E-117 7E-121 661.7 15.2 261 1-309 1-268 (268) 17 protein:vir:104694 Length: 281 97.3 2.7E-06 1.6E-09 51.2 7.7 226 1-273 23-281 (281) 18 protein:vir:103004 Length: 268 96.2 1.4E-05 8.9E-09 47.1 4.2 223 1-278 25-268 (268) 19 protein:vir:1780 Length: 67 # 26.8 0.94 0.00058 20.7 3.6 61 1-65 1-67 (67) No 1 >protein:vir:7198 Length: 309 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049772;genbank:gi:9632587;genbank:GeneID:1258809 Probab=100.00 E-value=4.5e-170 Score=949.02 Aligned_cols=309 Identities=99% Similarity=1.564 Sum_probs=308.2 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhcccceeccCCC Q lcl|NC_019399. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~ 80 (309) ||+++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++++||+++++||||+++++ T Consensus 1 m~~~~p~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~EyHydG~~k~yl~~~i~~de~~~~~gv~d~~~~~ 80 (309) T protein:vir:71 1 MSGYNPQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEERYKTGVFDLRGSN 80 (309) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEeCchhhhhcccceecCCcc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccccccchHHHHHHHHHHHHHHHHHccccCc Q lcl|NC_019399. 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) Q Consensus 81 v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~dl~yf~~l~~y~~~lq~~l~~~pd 160 (309) |||||+|+||++|++++|+|+|||+||||||+||+++|||+|+||+++|+||+||+||+||++++|||+||||||+|+|| T Consensus 81 v~aVt~i~~t~~gs~~t~dg~aty~w~~dfi~g~~gi~g~~~~s~~~~~~pn~fg~dl~Y~~~l~sy~~m~qd~l~~~pd 160 (309) T protein:vir:71 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) T ss_pred hhhhhhhhcCCcccccccCcccccccccchhhhhhhhhcccccccccccccchhhhhhHHHHHHHHHHHHHHHHhcccCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeccccceEEEeeccccceEEEEEeehhhhcchhhhhcccceeecccCCCccchhhhhcccccccccceeccCCCcccc Q lcl|NC_019399. 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVGPQDSWSLSERYNNPDHNLVGRVVGQDPNVKQG 240 (309) Q Consensus 161 ~~~n~~~~~l~i~gn~~~~d~i~~e~~~k~~~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 240 (309) ||||++++||+++|||++||++++|+|+|+|+|+++|+++++||||++++|+|++.++|+||+++|++|+|++||+++|+ T Consensus 161 ~~~N~~~~~l~i~gnf~~~~~i~~e~~~k~y~d~~~~v~~~~g~~~~~~~d~~~~~~~y~~~~~~l~~~~r~~dp~~~~~ 240 (309) T protein:vir:71 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVGPQDSWSLSERYNNPDHNLVGRVVGQDPNVKQG 240 (309) T ss_pred cccccccceEEEEEeeeecceEEEEEeeccccccchhhhcchhhccccccccccceehhcccchhhhcceeccCCcchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhccCCCceeeC Q lcl|NC_019399. 241 AYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGIFVG 309 (309) Q Consensus 241 ~YN~~WvKdyAtALvK~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~~~pPl~~i~G 309 (309) +|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+++.||+||||| T Consensus 241 ~YNn~WvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreeL~~~~pP~d~i~g 309 (309) T protein:vir:71 241 AYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGILVG 309 (309) T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhccCCCcceeC Confidence 999999999999999999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:103451 Length: 309 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803103;genbank:gi:116326383;genbank:GeneID:4405480 Probab=100.00 E-value=7.9e-170 Score=947.66 Aligned_cols=309 Identities=99% Similarity=1.569 Sum_probs=308.2 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhcccceeccCCC Q lcl|NC_019399. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~ 80 (309) ||+++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++++||+++++||||+++++ T Consensus 1 ms~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~EyHydG~~k~y~~~~i~~de~~~~~gv~d~~~~~ 80 (309) T protein:vir:10 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEeCchhhhhccceeeccCcc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccccccchHHHHHHHHHHHHHHHHHccccCc Q lcl|NC_019399. 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) Q Consensus 81 v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~dl~yf~~l~~y~~~lq~~l~~~pd 160 (309) |||||+|+||++|++++|+|+|||+||||||+||++++||+|+||+++|+||+||+||+||++++|||+|||+||+|+|| T Consensus 81 v~avt~i~~t~~gs~~s~dg~aty~w~~dfi~g~~~v~g~~~~s~~~~~~pn~~g~dl~y~~~l~sy~~m~~d~l~~~pd 160 (309) T protein:vir:10 81 VFAVTRILRTNVGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) T ss_pred hhhhhhhhhcccccccccCcccccccccchhhhhhhhhcccccccccccCcccceehhHHHHhHHHHHHHHHHHhcccCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeccccceEEEeeccccceEEEEEeehhhhcchhhhhcccceeecccCCCccchhhhhcccccccccceeccCCCcccc Q lcl|NC_019399. 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVGPQDSWSLSERYNNPDHNLVGRVVGQDPNVKQG 240 (309) Q Consensus 161 ~~~n~~~~~l~i~gn~~~~d~i~~e~~~k~~~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 240 (309) ||||++++||+++|||++||+|++|+|+|||+|+++|+++++||||++++|+|++.++|+||+++|++|||++||+++|+ T Consensus 161 ~~yN~~~~~l~i~gn~~~~~~i~~e~~~k~y~d~~~~v~~~~g~~~~~~~d~~~~~~~~~~~~~~l~~~~r~~dp~~~~~ 240 (309) T protein:vir:10 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVGPQDSWSLSERYNNPDHNLVGRVVGQDPDVKQG 240 (309) T ss_pred ceeccccceEEEEEeeecCceEEEEEecchhcccchhhccccccccccCcccccccccccccchhhhcceeccCCcchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhccCCCceeeC Q lcl|NC_019399. 241 AYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGIFVG 309 (309) Q Consensus 241 ~YN~~WvKdyAtALvK~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~~~pPl~~i~G 309 (309) +|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||++++||+||||| T Consensus 241 ~YNn~WvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreeL~~l~pP~~~i~G 309 (309) T protein:vir:10 241 AYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGIFVG 309 (309) T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHHhccCCcccccC Confidence 999999999999999999999999999999999999999999999999999999999999999999999 No 3 >protein:vir:6889 Length: 308 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861865;genbank:gi:32453656;genbank:GeneID:1494291 Probab=100.00 E-value=3.1e-161 Score=900.57 Aligned_cols=308 Identities=85% Similarity=1.437 Sum_probs=304.7 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhcccceeccCCC Q lcl|NC_019399. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~ 80 (309) ||+++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++++ |++++.|+|++++.+ T Consensus 1 m~~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~-d~~~k~g~f~~~d~~ 79 (308) T protein:vir:68 1 MSGYNAQNPKELKDVILRRLGAPIVNVELTTDQIYDCISRALELYGEYHFDGLNKGFHVFFVDD-EEKYRHGVFDMRGSN 79 (308) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEeCh-hhhhccceeecCCcc Confidence 9999999999999999999999999999999999999999999999999999999999999996 558889999999999 Q ss_pred ceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccccccchHHHHHHHHHHHHHHHHHccccCc Q lcl|NC_019399. 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) Q Consensus 81 v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~dl~yf~~l~~y~~~lq~~l~~~pd 160 (309) |+|||+|+||++|++++|+|+|||+||||||+||++++|++++||+++|+||+||+++|||+|+++||+||+|||+|+|+ T Consensus 80 v~avT~i~rt~~gs~~t~dg~a~Y~~~~dfv~g~~g~~g~~~~~~~~~~g~n~~g~~lgy~~~~~~Y~~~l~dl~~p~~~ 159 (308) T protein:vir:68 80 VFAVTRIIRTNVGSITSMDGNATYPWFTDFLLGMAGVSGGMGSNCGKFYGPNAFGADLGYYSQLVSYMGMLQDMIAPLPD 159 (308) T ss_pred chhhhhhhhccccccccccccccccccCceeeeecccCcccccccchhcccccccchhhhHHHHHHHHHHHHHhcccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeccccceEEEeeccccceEEEEEeehhhhcchhhhhcccceeecccCCCccchhhhhcccccccccceeccCCCcccc Q lcl|NC_019399. 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVGPQDSWSLSERYNNPDHNLVGRVVGQDPNVKQG 240 (309) Q Consensus 161 ~~~n~~~~~l~i~gn~~~~d~i~~e~~~k~~~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 240 (309) ||||+++++|+|++||++||++++|+|||||+|+.+|++++++|+++++.+.|.++..|++|++++++|||++||+++|+ T Consensus 160 ~~~n~~~~ql~i~~n~~~~d~~i~e~~~ks~le~~~~v~n~~~y~~~~~rl~~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 239 (308) T protein:vir:68 160 FWFNSANEQLKVMGNFRQKDVIIVESYVRSYIETHKMVGNTVGYGQVGPRDSWSISERYDNPDHNLVGRRVGEDPATKQG 239 (308) T ss_pred cccCCcceeEEEeeeeccCceEEEEEeeecccccchhhccceeeeeecccccCccccccccchhhheeeeeccCCCcccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhccCCCceeeC Q lcl|NC_019399. 241 AYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGIFVG 309 (309) Q Consensus 241 ~YN~~WvKdyAtALvK~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~~~pPl~~i~G 309 (309) +|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+++.||+||||| T Consensus 240 ~YNnrWvKdYaTAL~K~~wGqnL~K~qG~qLPGGvTlnG~~i~eeA~~E~e~LreEl~~~~pP~~~i~g 308 (308) T protein:vir:68 240 AYNNRWVKDYASALAKELNGQILAKHQGMMLPGGVTVDGVRLIEEARLEKEALREELYLLDPPAGILVG 308 (308) T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhccCCCceeeC Confidence 999999999999999999999999999999999999999999999999999999999999999999999 No 4 >protein:vir:107900 Length: 311 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595289;genbank:gi:161622595;genbank:GeneID:5783619 Probab=100.00 E-value=3.4e-158 Score=883.87 Aligned_cols=307 Identities=66% Similarity=1.179 Sum_probs=298.3 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchh-hhhcccceeccCC Q lcl|NC_019399. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDE-EKYKTGVFDLRGS 79 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d-~~~~~g~~~~~~~ 79 (309) |+ ++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+++++| +++++|+||+++. T Consensus 1 MA-~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~ALely~EyHydG~~k~y~~~~it~dd~~~~~~g~~d~~~~ 79 (311) T protein:vir:10 1 MA-SESYNPKQLKDAILRRLGAPITNIEVTTDQVYDCIQRALELYGEYHYNGYNKGYQAFYIGHDDEEKFRNGVFDLKGR 79 (311) T ss_pred CC-CCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEecchhhhhccCCceecCCc Confidence 88 889999999999999999999999999999999999999999999999999999999999987 6999999999999 Q ss_pred CceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccccccchHHHHHHHHHHHHHHHHHccccC Q lcl|NC_019399. 80 NVFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIP 159 (309) Q Consensus 80 ~v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~dl~yf~~l~~y~~~lq~~l~~~p 159 (309) +|+|||+|+|++.|++++|+|+|||+||||||+||++++|++++||+ .|+||+||+|||||+++++||+||+|||+|+| T Consensus 80 ~v~avt~i~~t~~gs~~s~dg~atY~w~~d~v~G~~~v~g~~~s~~~-~~g~n~fg~~lgyf~~l~~Y~~~l~dl~~p~~ 158 (311) T protein:vir:10 80 NIFAVTQILRTNVGSLTSMDGQATYPWFTDFVLGLAGINGGLGSSCN-SFGPNAFGADLGYFTQLMQYRSMMQDLLVPLP 158 (311) T ss_pred chhHHHHhhccccccccCCCCcccccccCchhhhhhhhhcccccccc-ccccccccchHHHHHHHHHHHHHHHHhhcccc Confidence 99999999999999999999999999999999999999999999886 59999999999999999999999999999999 Q ss_pred cceeccccceEEEeeccccceEEEEEeehhhhcchhhhhcccceeeccc---CCCccchhhhhcccccccccceeccCCC Q lcl|NC_019399. 160 DFWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVG---PQDSWSLSERYNNPDHNLVGRVVGQDPN 236 (309) Q Consensus 160 d~~~n~~~~~l~i~gn~~~~d~i~~e~~~k~~~d~~~~~~~~~~~~~~~---~~d~~~~~~~~~~~~~~l~~~~~~~~p~ 236 (309) |||||++|++|+++|||++||+|++|+|+|+|+|+++|+++++||++++ .+|+|+++++|+||+++|..+++++||+ T Consensus 159 d~~yn~~t~~l~i~gnf~~g~~i~~e~~~k~~~~v~~~v~~~~~~~~~~~~~~~d~~~~~~~~~n~~~~l~~~rag~dp~ 238 (311) T protein:vir:10 159 DYWYNDATEQLKVMGNFVKGDFIVIEVYTRSFNGVDSMVGNTAGYGYASGGCDENEWSPGAIWDNPARRISGMRAGEDLG 238 (311) T ss_pred ccccccccceEEEeeccccccEEEEEEeccccccchhhhhhhhhhhcccccccccccccchhhcccccccccceeecCcc Confidence 9999999999999999999999999999999999999999999999875 5799999999999999888555668999 Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhccCCCceeeC Q lcl|NC_019399. 237 VKQGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGIFVG 309 (309) Q Consensus 237 ~~~~~YN~~WvKdyAtALvK~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~~~pPl~~i~G 309 (309) ++|++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+++++|++++|| T Consensus 239 ~~~~~YNnrWvKdYaTALvK~~wGq~L~K~qG~qLPGGvTlnG~~i~eeA~~E~e~LreEl~~~~~Pp~~liG 311 (311) T protein:vir:10 239 LQDGAYNNRWVKDYATALVKEVNGNILAKHQGMQLAGGTTVDGIRLIEEARLEKERLREELDLLDPPTPILIG 311 (311) T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcCCCchhccC Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 No 5 >protein:vir:81013 Length: 310 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469493;genbank:gi:157311450;genbank:GeneID:5602275 Probab=100.00 E-value=4.6e-155 Score=866.72 Aligned_cols=306 Identities=64% Similarity=1.123 Sum_probs=294.9 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhcccceeccCCC Q lcl|NC_019399. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~ 80 (309) ||+++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++|+++ .++|+|++++++ T Consensus 1 m~~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~yl~~~ited~--~~~g~~d~~d~~ 78 (310) T protein:vir:81 1 MSGYVTNNPRELKDAILRRLGAPVINVEVTEDQIYDCIQRALELYGEYHFDGVNKGYKVFRVSAEQ--AQHGVFDLSDSG 78 (310) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhh--hcCCeeeeCCcc Confidence 999999999999999999999999999999999999999999999999999999999999999654 789999999999 Q ss_pred ceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccccccchHHHHHHHHHHHHHHHHHccccCc Q lcl|NC_019399. 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) Q Consensus 81 v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~dl~yf~~l~~y~~~lq~~l~~~pd 160 (309) |+|||+|+||++|++.+++|+|||+||||||+||++++|++++||.++|+||+||++|+||++++|||+|+|+||+|+|| T Consensus 79 v~avt~i~~t~~g~~~t~dg~a~Y~~~~d~v~Gi~~v~g~~~~~~~~~~~~~~~g~~l~y~~~l~~y~~~~q~~ln~lpd 158 (310) T protein:vir:81 79 VFAVTKIIRTNVGSAATMDGTAVYPWFTDFLLGLAGVNGGLGSGCSKFYGPNAMGGDLGYFEQLMSYRATMQNMLNPLPD 158 (310) T ss_pred eeeeehhhhccccccccccccccccccCceeeeeccccccccchhhhhccccccchhhhhhhHHHHHHHHHHHHhCcccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeccccceEEEeeccccceEEEEEeehhhhcchhhhhcccceeec-ccCCCccchhhhhcccccccccceeccC---CC Q lcl|NC_019399. 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGT-VGPQDSWSLSERYNNPDHNLVGRVVGQD---PN 236 (309) Q Consensus 161 ~~~n~~~~~l~i~gn~~~~d~i~~e~~~k~~~d~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~l~~~~~~~~---p~ 236 (309) ||||++++||+|+|||++||++++|+|+|+|+|+.+++++++++++ ++++|+|+++.+|+||+..+..|+.+.+ |+ T Consensus 159 y~yn~~~~ql~i~~nf~~gd~ii~e~~~ks~le~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (310) T protein:vir:81 159 YWYNSANGQLKITGNFREGDLIVVELYVKSYVDVPDMIGAVAGYAHAGGCSTAGGISAVYDNPTAGLSGIVAGMGPISEN 238 (310) T ss_pred cccCCccceeeeeeecccCcEEEEEEEeecccCchhhhhcccceeEEcccCCccccccccccchhhhceeeeecccCCCc Confidence 9999999999999999999999999999999999999999999666 5999999999999999888666665554 44 Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhccCCCceeeC Q lcl|NC_019399. 237 VKQGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGIFVG 309 (309) Q Consensus 237 ~~~~~YN~~WvKdyAtALvK~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~~~pPl~~i~G 309 (309) +|++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||++++||+||||= T Consensus 239 -~~~~YNnrWvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~~~pP~~i~~~ 310 (310) T protein:vir:81 239 -KQGAYNNRWVKDMATAFTKEVWGSIMAKHQGLQLPGGVTVDGIRIIEEARADIEKLRQELELLDPPFGILMI 310 (310) T ss_pred -cccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeC Confidence 699999999999999999999999999999999999999999999999999999999999999999999777 No 6 >protein:vir:6589 Length: 310 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891720;genbank:gi:33620666;genbank:GeneID:1725419 Probab=100.00 E-value=4.6e-155 Score=866.72 Aligned_cols=306 Identities=64% Similarity=1.123 Sum_probs=294.9 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhcccceeccCCC Q lcl|NC_019399. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~ 80 (309) ||+++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++|+++ .++|+|++++++ T Consensus 1 m~~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~yl~~~ited~--~~~g~~d~~d~~ 78 (310) T protein:vir:65 1 MSGYVTNNPRELKDAILRRLGAPVINVEVTEDQIYDCIQRALELYGEYHFDGVNKGYKVFRVSAEQ--AQHGVFDLSDSG 78 (310) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhh--hcCCeeeeCCcc Confidence 999999999999999999999999999999999999999999999999999999999999999654 789999999999 Q ss_pred ceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccccccchHHHHHHHHHHHHHHHHHccccCc Q lcl|NC_019399. 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) Q Consensus 81 v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~dl~yf~~l~~y~~~lq~~l~~~pd 160 (309) |+|||+|+||++|++.+++|+|||+||||||+||++++|++++||.++|+||+||++|+||++++|||+|+|+||+|+|| T Consensus 79 v~avt~i~~t~~g~~~t~dg~a~Y~~~~d~v~Gi~~v~g~~~~~~~~~~~~~~~g~~l~y~~~l~~y~~~~q~~ln~lpd 158 (310) T protein:vir:65 79 VFAVTKIIRTNVGSAATMDGTAVYPWFTDFLLGLAGVNGGLGSGCSKFYGPNAMGGDLGYFEQLMSYRATMQNMLNPLPD 158 (310) T ss_pred eeeeehhhhccccccccccccccccccCceeeeeccccccccchhhhhccccccchhhhhhhHHHHHHHHHHHHhCcccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeccccceEEEeeccccceEEEEEeehhhhcchhhhhcccceeec-ccCCCccchhhhhcccccccccceeccC---CC Q lcl|NC_019399. 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGT-VGPQDSWSLSERYNNPDHNLVGRVVGQD---PN 236 (309) Q Consensus 161 ~~~n~~~~~l~i~gn~~~~d~i~~e~~~k~~~d~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~l~~~~~~~~---p~ 236 (309) ||||++++||+|+|||++||++++|+|+|+|+|+.+++++++++++ ++++|+|+++.+|+||+..+..|+.+.+ |+ T Consensus 159 y~yn~~~~ql~i~~nf~~gd~ii~e~~~ks~le~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (310) T protein:vir:65 159 YWYNSANGQLKITGNFREGDLIVVELYVKSYVDVPDMIGAVAGYAHAGGCSTAGGISAVYDNPTAGLSGIVAGMGPISEN 238 (310) T ss_pred cccCCccceeeeeeecccCcEEEEEEEeecccCchhhhhcccceeEEcccCCccccccccccchhhhceeeeecccCCCc Confidence 9999999999999999999999999999999999999999999666 5999999999999999888666665554 44 Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhccCCCceeeC Q lcl|NC_019399. 237 VKQGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGIFVG 309 (309) Q Consensus 237 ~~~~~YN~~WvKdyAtALvK~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~~~pPl~~i~G 309 (309) +|++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||++++||+||||= T Consensus 239 -~~~~YNnrWvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~~~pP~~i~~~ 310 (310) T protein:vir:65 239 -KQGAYNNRWVKDMATAFTKEVWGSIMAKHQGLQLPGGVTVDGIRIIEEARADIEKLRQELELLDPPFGILMI 310 (310) T ss_pred -cccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeC Confidence 699999999999999999999999999999999999999999999999999999999999999999999777 No 7 >protein:vir:106428 Length: 306 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944100;genbank:gi:38640144;genbank:GeneID:2658189 Probab=100.00 E-value=6.3e-151 Score=844.04 Aligned_cols=302 Identities=47% Similarity=0.793 Sum_probs=293.6 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhcccceeccCCC Q lcl|NC_019399. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~ 80 (309) ||+++|+||+|||||||||||||||||||||+||+||||||||+|+||||||++|+|++|++++ +++++|+||+++++ T Consensus 2 Ms~~~~~s~~eLkdyiLRrLGAPii~IeVtd~Qi~DcIdrAlely~EyHydG~~k~y~~~~i~e--d~~~~g~~d~~~~~ 79 (306) T protein:vir:10 2 MSNNFVRNPRELKDLILRRLGAPVIQVEVTEDHIYDSIGRALELYKEYHHDGLNKAYLSVKLNQ--EQAATGYIDISAYP 79 (306) T ss_pred CCccCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHHhhhhccccccceEEEEech--hcccCCeEecCCcc Confidence 9999999999999999999999999999999999999999999999999999999999999995 46889999999999 Q ss_pred ceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccccccchHHHHHHHHHHHHHHHHHccccCc Q lcl|NC_019399. 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) Q Consensus 81 v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~dl~yf~~l~~y~~~lq~~l~~~pd 160 (309) |++||+|+|+++|++++|+|+|+|+|++||++||++++ +|+++||||+||+||+||++++|||+|||+||+|+|| T Consensus 80 v~aVtkI~r~~~g~~~tm~Gna~~~~~q~FL~~l~~~~-----~~~~~~g~~~~g~dL~yy~~~~sy~~~lq~ml~p~pD 154 (306) T protein:vir:10 80 VFAITKIIRHKSMMWGGLGGGATLNFFTDFLTTLGGGP-----QGISYHGPFGALGNIGFFAQFQSYQNMMMDQLDPLPD 154 (306) T ss_pred ceeeeeeeccCcceeeeccccccccchhhhhhhhcccc-----cchhhccchhhhhhhhHHHHHHHHHHHHHHHhccccc Confidence 99999999999999999999999999999999999865 4778999999999999999999999999999999999 Q ss_pred ceeccccceEEEeeccccceEEEEEeehhhhcchhhhhcccceeecc-cCCCccchhhhhcccccccccceeccCCCc-- Q lcl|NC_019399. 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTV-GPQDSWSLSERYNNPDHNLVGRVVGQDPNV-- 237 (309) Q Consensus 161 ~~~n~~~~~l~i~gn~~~~d~i~~e~~~k~~~d~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~l~~~~~~~~p~~-- 237 (309) ||||+++++++|++||++||.+++|+|+|+|+|+++++++++|||++ ++++.|.....|.||++.|.+.+++++|+. T Consensus 155 f~~n~~~~ql~i~~nf~~~D~l~~e~~~ks~~~v~~~~~~~~g~g~~~~~~~~~~~~~~~~np~~~l~~~~~g~~~~~~~ 234 (306) T protein:vir:10 155 YWLDPVNGVVQLTGNFRENDVIIMEVHIQNFVELEKSVRGVAGAGIVAGGPTSADNKDKWMNPYSRMPSNVAGRARSEFP 234 (306) T ss_pred eeEcCCcceEEEEEeecCCcEEEEEeecccccccchhhhcccccccccCCccccchhhhhccchhhhccccccccCCCcc Confidence 99999999999999999999999999999999999999999999998 566788999999999999999999998874 Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhccCCCceeeC Q lcl|NC_019399. 238 KQGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGIFVG 309 (309) Q Consensus 238 ~~~~YN~~WvKdyAtALvK~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~~~pPl~~i~G 309 (309) +|++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+++.||+||+|| T Consensus 235 ~~~~YNnrWvKdYaTAL~K~~wGq~L~K~qG~qLPGGVTvdG~~i~eeA~~E~e~LreEL~~~~~~ppi~mg 306 (306) T protein:vir:10 235 DQGVYNVRWVKDYATTLTKEVWGEILAKHQGMSLPGGVTVDGTRLVEEARQEKEVLRQELLLLEEPLPILMG 306 (306) T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHhhhccCCCccccC Confidence 699999999999999999999999999999999999999999999999999999999999999999999999 No 8 >protein:vir:101857 Length: 307 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238876;genbank:gi:66391951;genbank:GeneID:3416684 Probab=100.00 E-value=2.7e-149 Score=835.05 Aligned_cols=302 Identities=57% Similarity=1.015 Sum_probs=287.1 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhcccceeccCCC Q lcl|NC_019399. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~ 80 (309) || ++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+++ |+++++|+||+++++ T Consensus 1 m~-~~~~s~~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~it--e~~~~~g~~d~~d~~ 77 (307) T protein:vir:10 1 MS-YTCNNPLELKDAILRRLGAPIVHVEVTEEQVFDCISRALELYGEYHYDGFHRTYATVVLT--EQQAKTGIIDMKGGN 77 (307) T ss_pred CC-CCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEec--hhhccCCEEecCCcc Confidence 99 669999999999999999999999999999999999999999999999999999999998 568889999999999 Q ss_pred ceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccccccchHHHHHHHHHHHHHHHHHccccCc Q lcl|NC_019399. 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) Q Consensus 81 v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~dl~yf~~l~~y~~~lq~~l~~~pd 160 (309) |||||+|+||++|++++|+|+|||+|||||++|+++++++ +|| ++|+||+||++++||++++|||.||++||+|+|| T Consensus 78 v~avt~iirt~~~~~~t~dG~a~y~w~~d~~~g~~g~~~~--~~~-~~~~~n~~g~~l~y~t~l~sy~~~m~d~~~pl~d 154 (307) T protein:vir:10 78 VFAVTQVLRTNVGSIITMDGTAVYPWFTDFVMGMTGASIG--GQC-KWYGPNAFGGDLGYFTQLMSYRSMMGDLLSPLPD 154 (307) T ss_pred hhhhhhhhhhccccccccCcccccccccccceeecCCccc--eee-eeecccccccchhhhhHHHHHHHHHHhhcccccc Confidence 9999999999999999999999999999999999997764 555 6899999999999999999999999999999999 Q ss_pred ceeccccceEEEeeccccceEEEEEeehhhhcchhhhh-cccceeecccCCCcc--chhhhhcccccccccceeccCCCc Q lcl|NC_019399. 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMV-GNTVGYGTVGPQDSW--SLSERYNNPDHNLVGRVVGQDPNV 237 (309) Q Consensus 161 ~~~n~~~~~l~i~gn~~~~d~i~~e~~~k~~~d~~~~~-~~~~~~~~~~~~d~~--~~~~~~~~~~~~l~~~~~~~~p~~ 237 (309) ||||++|++|+|+|||++||+|++|+|+|+|+++.+|+ ++.+||||++++++. ...+.|+||+ ++++|+|+.+|++ T Consensus 155 ~~yn~~t~~l~i~~nf~~~d~i~~e~~~k~yle~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ 233 (307) T protein:vir:10 155 FYYNSSSEMMKIAGQFKAGDLIVFEVYCKSYANVDTMLAGTSAGYGFAMSCDGDEPSQSQLYGNPN-LAGGAIYAGGSNG 233 (307) T ss_pred eeecCCceeEEEeeeccCCceEEEEEEeccccchhhhhhcccccceEeeccccCCccchhhcCCch-hhcccccccCccc Confidence 99999999999999999999999999999999888888 556899999888764 5557788866 7899999999998 Q ss_pred cc--ccccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhccCCCceeeC Q lcl|NC_019399. 238 KQ--GAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGIFVG 309 (309) Q Consensus 238 ~~--~~YN~~WvKdyAtALvK~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~~~pPl~~i~G 309 (309) ++ ++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+++.||+||+|| T Consensus 234 ~t~~~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTldG~~i~eeA~~E~e~LreeL~~~~~~ppi~mg 307 (307) T protein:vir:10 234 MLKDGAYNNRWVKDMSTAYVKELNGQVLAKHQGMQLPGGITIDGVRLIEEARIDIDKLRNELELLDAPPPIIMG 307 (307) T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Confidence 75 7999999999999999999999999999999999999999999999999999999999999999999999 No 9 >protein:vir:101153 Length: 307 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932504;genbank:gi:37651630;genbank:GeneID:2610646 Probab=100.00 E-value=2.7e-149 Score=835.05 Aligned_cols=302 Identities=57% Similarity=1.015 Sum_probs=287.1 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhcccceeccCCC Q lcl|NC_019399. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~ 80 (309) || ++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+++ |+++++|+||+++++ T Consensus 1 m~-~~~~s~~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~it--e~~~~~g~~d~~d~~ 77 (307) T protein:vir:10 1 MS-YTCNNPLELKDAILRRLGAPIVHVEVTEEQVFDCISRALELYGEYHYDGFHRTYATVVLT--EQQAKTGIIDMKGGN 77 (307) T ss_pred CC-CCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEec--hhhccCCEEecCCcc Confidence 99 669999999999999999999999999999999999999999999999999999999998 568889999999999 Q ss_pred ceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccccccchHHHHHHHHHHHHHHHHHccccCc Q lcl|NC_019399. 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) Q Consensus 81 v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~dl~yf~~l~~y~~~lq~~l~~~pd 160 (309) |||||+|+||++|++++|+|+|||+|||||++|+++++++ +|| ++|+||+||++++||++++|||.||++||+|+|| T Consensus 78 v~avt~iirt~~~~~~t~dG~a~y~w~~d~~~g~~g~~~~--~~~-~~~~~n~~g~~l~y~t~l~sy~~~m~d~~~pl~d 154 (307) T protein:vir:10 78 VFAVTQVLRTNVGSIITMDGTAVYPWFTDFVMGMTGASIG--GQC-KWYGPNAFGGDLGYFTQLMSYRSMMGDLLSPLPD 154 (307) T ss_pred hhhhhhhhhhccccccccCcccccccccccceeecCCccc--eee-eeecccccccchhhhhHHHHHHHHHHhhcccccc Confidence 9999999999999999999999999999999999997764 555 6899999999999999999999999999999999 Q ss_pred ceeccccceEEEeeccccceEEEEEeehhhhcchhhhh-cccceeecccCCCcc--chhhhhcccccccccceeccCCCc Q lcl|NC_019399. 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMV-GNTVGYGTVGPQDSW--SLSERYNNPDHNLVGRVVGQDPNV 237 (309) Q Consensus 161 ~~~n~~~~~l~i~gn~~~~d~i~~e~~~k~~~d~~~~~-~~~~~~~~~~~~d~~--~~~~~~~~~~~~l~~~~~~~~p~~ 237 (309) ||||++|++|+|+|||++||+|++|+|+|+|+++.+|+ ++.+||||++++++. ...+.|+||+ ++++|+|+.+|++ T Consensus 155 ~~yn~~t~~l~i~~nf~~~d~i~~e~~~k~yle~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ 233 (307) T protein:vir:10 155 FYYNSSSEMMKIAGQFKAGDLIVFEVYCKSYANVDTMLAGTSAGYGFAMSCDGDEPSQSQLYGNPN-LAGGAIYAGGSNG 233 (307) T ss_pred eeecCCceeEEEeeeccCCceEEEEEEeccccchhhhhhcccccceEeeccccCCccchhhcCCch-hhcccccccCccc Confidence 99999999999999999999999999999999888888 556899999888764 5557788866 7899999999998 Q ss_pred cc--ccccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhccCCCceeeC Q lcl|NC_019399. 238 KQ--GAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGIFVG 309 (309) Q Consensus 238 ~~--~~YN~~WvKdyAtALvK~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~~~pPl~~i~G 309 (309) ++ ++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+++.||+||+|| T Consensus 234 ~t~~~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTldG~~i~eeA~~E~e~LreeL~~~~~~ppi~mg 307 (307) T protein:vir:10 234 MLKDGAYNNRWVKDMSTAYVKELNGQVLAKHQGMQLPGGITIDGVRLIEEARIDIDKLRNELELLDAPPPIIMG 307 (307) T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Confidence 75 7999999999999999999999999999999999999999999999999999999999999999999999 No 10 >protein:vir:100534 Length: 314 # NCBI annotation: gp13 head completion protein # Family: family:all:1103 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656375;genbank:gi:109290126;genbank:GeneID:4156512 Probab=100.00 E-value=1.1e-148 Score=831.84 Aligned_cols=303 Identities=59% Similarity=1.016 Sum_probs=287.9 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhcccceeccCCC Q lcl|NC_019399. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~ 80 (309) || ++|+||+|||||||||||||||||||||+|||||||||||+||||||||++|+|++|+++ |++.++|+|+++..+ T Consensus 1 ma-~~~~s~~eLkdyiLRrLGAPvi~InVtddQI~DcId~ALqlf~EyHyDG~~k~yl~~~it--e~~~k~g~~d~~~~~ 77 (314) T protein:vir:10 1 MS-YTTNNPLELKDAILRRLGAPIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLT--EEQAKTGVISFAGGN 77 (314) T ss_pred CC-CCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEec--hhhhcCCEEeeCCcc Confidence 98 679999999999999999999999999999999999999999999999999999999998 457889999999999 Q ss_pred ceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccccccchHHHHHHHHHHHHHHHHHccccCc Q lcl|NC_019399. 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) Q Consensus 81 v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~dl~yf~~l~~y~~~lq~~l~~~pd 160 (309) |+|||+|+||+++++++|+|+|||+|||||++||+++++| +||+ +|+||+||++++||+++++||+||++||+|+|| T Consensus 78 v~avt~i~rt~~~~~~~~~g~a~Y~~~~d~~lG~~~~~~~--~~~~-~~~pn~fg~~~~yf~~~m~y~~ml~d~~~pl~d 154 (314) T protein:vir:10 78 VFAVTQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGASIG--GQCR-WYGPNAFGADLGYFTQLMSYRDMMGDMLSPLPD 154 (314) T ss_pred ceehhhhhhcccccccccCccccccccCceeeeecccccc--cccc-eeccccccchhHHHHHHHHHHHHHHhhhccccc Confidence 9999999999999999999999999999999999999976 3453 799999999999999999999999999999999 Q ss_pred ceeccccceEEEeeccccceEEEEEeehhhhcchhhhh--------cccceeecccCCCcc--chhhhhcccccccccce Q lcl|NC_019399. 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMV--------GNTVGYGTVGPQDSW--SLSERYNNPDHNLVGRV 230 (309) Q Consensus 161 ~~~n~~~~~l~i~gn~~~~d~i~~e~~~k~~~d~~~~~--------~~~~~~~~~~~~d~~--~~~~~~~~~~~~l~~~~ 230 (309) ||||++|++|+|+|||+++|+|++|+++|+|+|+++++ ++.+||+|++++|+. ....+|.||+..+.+.+ T Consensus 155 ~~~n~~~~~l~i~~nf~~~Dll~~e~~~k~~~~~d~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~nP~~~~~~~~ 234 (314) T protein:vir:10 155 FFFNSTTEMMRVAGKLQKGDLLVFEVYCKSYANVDSMLSGVDSTLSGTSAGYGFAMSDDDSVPSVAQKYANPNMSHGQIY 234 (314) T ss_pred ccccCCcceEEEeecccCCcEEEEEEEeccccccchhccccccccceeeeeceecccccccchhhhhhhcCcccccceee Confidence 99999999999999999999999999999999999998 677889999999874 55568999999999987 Q ss_pred eccCCC-cccccccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhccCCCceeeC Q lcl|NC_019399. 231 VGQDPN-VKQGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGIFVG 309 (309) Q Consensus 231 ~~~~p~-~~~~~YN~~WvKdyAtALvK~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~~~pPl~~i~G 309 (309) ++++.. .+|++|||||||||||||+||||||||+|||||||||||||||+|||+||++|||+|||||+++.||+|+.|| T Consensus 235 ~g~~~~~~~~~~yNnrWvKdYaTALvK~~wGqnL~K~qG~qLPGGVTldG~~l~eea~~E~e~Lreel~~~~~~pp~~mg 314 (314) T protein:vir:10 235 AGQSNGMSKDNSYNNRWVKDMATAFVKELNGQVLAKHQGMQLPGGVTIDGIRLIEEARIDIDKLRQELELLDGPPPIIMG 314 (314) T ss_pred eccccccccccccchhhHHHHHHHHHHHHHHHHHHHhCCcccCCceeecHHHHHHHHHHHHHHHHHHHhhccCCCccccC Confidence 777544 4799999999999999999999999999999999999999999999999999999999999999999999999 No 11 >protein:vir:98189 Length: 307 # NCBI annotation: gp13 head completion # Family: family:all:1103 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239190;genbank:gi:66391665;genbank:GeneID:3416291 Probab=100.00 E-value=2.3e-148 Score=830.02 Aligned_cols=300 Identities=52% Similarity=0.930 Sum_probs=286.5 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhcccceeccCCC Q lcl|NC_019399. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~ 80 (309) |.- +||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+++++|. +|++++++++ T Consensus 1 m~t---~s~~eLKdyiLRrLGAPvi~InVtd~Qi~DcId~ALqly~EyHydG~~k~y~~~~i~~d~~---~~~~~~~~~~ 74 (307) T protein:vir:98 1 MIT---NNPEQLKDEILRRLGAPIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNP---RNVFDLSKEH 74 (307) T ss_pred CCc---CCHHHHHHHHHHhcCCceeEEecCHHHHHHHHHHHHHHHHhhhcccccceeEEEEeccccc---ccceecCCch Confidence 773 9999999999999999999999999999999999999999999999999999999998774 5899999999 Q ss_pred ceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccccccchHHHHHHHHHHHHHHHHHccccCc Q lcl|NC_019399. 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) Q Consensus 81 v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~dl~yf~~l~~y~~~lq~~l~~~pd 160 (309) ||+||+|+|+++|++++|+|+|||+|||||++||++.++| +++|+++||||+||++|+||++++|||+||+++|+|+|| T Consensus 75 v~aVT~iirt~~g~~~s~dg~aty~w~~d~~~g~~~~~~g-~~~~s~~~g~n~~g~~l~yf~q~~~Y~~~l~dl~~p~~d 153 (307) T protein:vir:98 75 IFAVTKVLRTNIGSLVSMDGTAVYPWFTDFLMGLTGGSLG-GRCASSVYGMNAYGADLGYFTQMMSYQRSMQELLAPLPD 153 (307) T ss_pred HhHHHHHhhcCccceecccccccccccCcceeecCCcccc-cccccceecCccccchHHHHHHHHHHHHHHHHhhccccc Confidence 9999999999999999999999999999999999998776 678999999999999999999999999999999999999 Q ss_pred ceeccccceEEEeeccccceEEEEEeehhhhcchhhhhcccceeecccCCC--ccchhhhhcccccccccceeccCCCcc Q lcl|NC_019399. 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVGPQD--SWSLSERYNNPDHNLVGRVVGQDPNVK 238 (309) Q Consensus 161 ~~~n~~~~~l~i~gn~~~~d~i~~e~~~k~~~d~~~~~~~~~~~~~~~~~d--~~~~~~~~~~~~~~l~~~~~~~~p~~~ 238 (309) ||||+++++|++.|||++||+|++|+|||||+|++.|+++++||++++.+. .|.+++.|+||+.++++|||+.+|+++ T Consensus 154 y~yn~~~~~l~~~gn~~~~d~i~~e~~~ks~ld~~~~i~~~~~y~~~~~~~~~d~~~~d~~~n~y~~~~~~yra~~~~~~ 233 (307) T protein:vir:98 154 YWYNDDTGQFCVWGKVNNGDIIVIEVMVRSFVDVPSAVGSVAGYATAGSNAVEDQSIADIYDNPYNAVVGGVRAGQGTTV 233 (307) T ss_pred eeecCcccceeeeeccccCceEEEEEeecccccchHHhcccccceeecccccccccchhhccchhhhhhcceeecCCCCc Confidence 999999999999999999999999999999999999999999999997775 589999999999999999999999887 Q ss_pred ---cccccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHH--hccCCCcee Q lcl|NC_019399. 239 ---QGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELY--LLDPPFGIF 307 (309) Q Consensus 239 ---~~~YN~~WvKdyAtALvK~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~--~~~pPl~~i 307 (309) +++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+ +..||++|| T Consensus 234 ~~~t~aYNnrWvKdYaTALvK~~wGq~L~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~~~~~ppi~mi 307 (307) T protein:vir:98 234 TGGTSAYNNRWVKDYSTALVKEINGQILAKFQGMQLPGGVAPDGTRLIQEAETKLQGLRDELISMSDAVPIIMV 307 (307) T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Confidence 569999999999999999999999999999999999999999999999999999999996 455566666 No 12 >protein:vir:5657 Length: 307 # NCBI annotation: gp13 # Family: family:all:1103 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899596;genbank:gi:34419583;genbank:GeneID:2545698 Probab=100.00 E-value=3.5e-147 Score=823.53 Aligned_cols=303 Identities=45% Similarity=0.775 Sum_probs=290.3 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhcccceeccCCC Q lcl|NC_019399. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~ 80 (309) ||+++|+||+|||||||||||||||||||||+|||||||||||+||||||||++|+|++|++| |++.++|+|++ +++ T Consensus 1 m~~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~EyHydG~~k~y~~~~vt--e~~~~~G~~d~-~~~ 77 (307) T protein:vir:56 1 MQAYNATSPREMKDLILRRLGAPIVNVEVSEDQVYDCISRALELYIEYHPDGVNKTYSIISLS--EEQAQTGIIDL-DIP 77 (307) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEec--hhhccCCeEec-Ccc Confidence 999999999999999999999999999999999999999999999999999999999999998 45888999999 679 Q ss_pred ceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccccccchHHHHHHHHHHHHHHHHHccccCc Q lcl|NC_019399. 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) Q Consensus 81 v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~dl~yf~~l~~y~~~lq~~l~~~pd 160 (309) |+|||+|+|++ ++.++++|+|||+|||||++|+++++|+ ++|+++++|+++|++|+||++++|||+||+++|+|+|| T Consensus 78 v~avt~Iirt~-~s~~t~dg~aty~w~tdfi~~~~gv~g~--~~~~~~~~~~~~~~~l~y~~~~~sy~~~l~d~~~p~~d 154 (307) T protein:vir:56 78 ATAITKILRAE-SSFFTMDGNATYSWFSDFLQGLAGGPGA--GSCNSYHQGMLGQGSLSDYWNLMSYKNMLTDLLSPEYD 154 (307) T ss_pred hhhhhhhhccC-cccccCCCccccCccccceecccccccc--cceeeecccccchhhhhHHHHHHHHHHHHHhhcccccc Confidence 99999999999 9999999999999999999999999986 88999999999999999999999999999999999999 Q ss_pred ceeccccceEEEeeccccceEEEEEeehhhhcchhhhhcccceeeccc--CCCccchhhhhcccccccccceeccCCCcc Q lcl|NC_019399. 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVG--PQDSWSLSERYNNPDHNLVGRVVGQDPNVK 238 (309) Q Consensus 161 ~~~n~~~~~l~i~gn~~~~d~i~~e~~~k~~~d~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~~~l~~~~~~~~p~~~ 238 (309) ||||++++||+++|||++||++++|+|+|+|.++..++++++||++++ ....|..++.|+||+.++...+.+.||+++ T Consensus 155 ~~yn~~~~qL~~~~n~~~g~~~ive~~~~s~~~~~~~~~~~~~~~~~~~r~y~~~~~~~~~~n~~~~~~~~~~~~dp~~~ 234 (307) T protein:vir:56 155 YWYNGVNKQLRINANLSAGELIVVEAFVPSALLVSESATGIIGNKAATIGSYEDTTAQERWDDPYSILRQNNTIGNPNQF 234 (307) T ss_pred eeecCcceeeeeeeeeccCCeEEEEeeccchhhhhhhhhhhcceeeecCcccccCCchhhccCcceeeeccccccCCccc Confidence 999999999999999999999999999999999999999999999984 447999999999988766555556899998 Q ss_pred cc--cccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhccCCCceeeC Q lcl|NC_019399. 239 QG--AYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGIFVG 309 (309) Q Consensus 239 ~~--~YN~~WvKdyAtALvK~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~~~pPl~~i~G 309 (309) ++ +|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+++++|++++|| T Consensus 235 t~~~~YNn~WvKdYaTALvK~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~~~~P~~~liG 307 (307) T protein:vir:56 235 AEQNAYSVRWVKDMATAMTKQMNGVILKKHQGLQLPGGITIDGKEIYDEATQEIERLREELMSLTVPLGVFMG 307 (307) T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhccCCchhhcC Confidence 75 999999999999999999999999999999999999999999999999999999999999999999999 No 13 >protein:vir:106985 Length: 276 # NCBI annotation: neck protein gp13 # Family: family:all:1103 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195127;genbank:gi:58532904;uniprot:Q5GQW0;genbank:GeneID:3260482 Probab=100.00 E-value=1.8e-126 Score=709.94 Aligned_cols=272 Identities=24% Similarity=0.365 Sum_probs=245.4 Q ss_pred CCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhcccceeccCCCce Q lcl|NC_019399. 3 GYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSNVF 82 (309) Q Consensus 3 ~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~v~ 82 (309) -|+|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+++++|... + T Consensus 1 ma~p~s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~dd~~~--~---------- 68 (276) T protein:vir:10 1 MAKPSSKQELIDYCKRQLGAPVLQINTDSAQDDDIIDQAIQYYHEYHFDGIERMYLKHQFTADDVTR--F---------- 68 (276) T ss_pred CCCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechHHhhh--h---------- Confidence 4699999999999999999999999999999999999999999999999999999999999887654 2 Q ss_pred eEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccccccchHHHHHHHHHHHHHHHHHccccCcce Q lcl|NC_019399. 83 AVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPDFW 162 (309) Q Consensus 83 avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~dl~yf~~l~~y~~~lq~~l~~~pd~~ 162 (309) ++++.++++|++++|+|+|||+||||||+||++++|| |.++++||+||+++++| +++| T Consensus 69 -~~~~~~~~~~s~~~~~g~~~Y~~~pd~v~gi~~v~~g----~s~~~g~n~f~~~~q~f--l~d~--------------- 126 (276) T protein:vir:10 69 -TSSDQLTTAPNNDDWENRNNYIQVPDAVIGISKVFGV----SSNFLRNNLFGLSNQYY--LMDL--------------- 126 (276) T ss_pred -hhhhhcccccceeeeeccCcceecCcchhhhhhhccc----CccccCCccccccHHHH--HHHH--------------- Confidence 4457889999999999999999999999999999974 45789999999999999 3333 Q ss_pred eccccceEEEeeccccceEEEEEeehhhhcchhhhhcccceeecccCCCccchhhhhcc---cccccccceeccCCCccc Q lcl|NC_019399. 163 FNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVGPQDSWSLSERYNN---PDHNLVGRVVGQDPNVKQ 239 (309) Q Consensus 163 ~n~~~~~l~i~gn~~~~d~i~~e~~~k~~~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~l~~~~~~~~p~~~~ 239 (309) ||..++||+++|||+.+|++++|+|.++ +|.-...+..+||+|++++++|+++..|.+ ..+++++|+|+.||+++| T Consensus 127 ~~~~~~ql~~~g~~~~~dy~~ve~~~~~-id~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~dP~~~~ 205 (276) T protein:vir:10 127 FSFSTGSAFSFGNFDLTNYYMIKQHFET-IDMIINTGSLIEYRFNKRQDRLYIDIDTSRIVEDQYLLIDCYRYLNPDDFT 205 (276) T ss_pred hcccccceeeccceeeeeEEEEEEEecc-cceeecCCceeEEeeeccCCccccccccccccCCHHHHhhcccccCCcccc Confidence 6888999999999999999999999986 444444466678999999999999865543 234899999999999999 Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHh-ccCCCceeeC Q lcl|NC_019399. 240 GAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYL-LDPPFGIFVG 309 (309) Q Consensus 240 ~~YN~~WvKdyAtALvK~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~-~~pPl~~i~G 309 (309) ++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||++ +++|..++|| T Consensus 206 ~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTvnG~~i~eeA~~E~e~L~eel~~~~~~Pp~~miG 276 (276) T protein:vir:10 206 QVYDDSFVKRYATALLKRQWGQNLIKYNSVQLPGGITLNGRQIWEDGNNEVRELESRMMTDYSLPPMDMIG 276 (276) T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeeCHHHHHHHHHHHHHHHHHHHHhhcCCCceeecC Confidence 999999999999999999999999999999999999999999999999999999999974 5778888899 No 14 >protein:vir:104585 Length: 268 # NCBI annotation: gp13 # Family: family:all:1103 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214649;genbank:gi:61806290;genbank:GeneID:3294640 Probab=100.00 E-value=7.3e-122 Score=684.69 Aligned_cols=262 Identities=22% Similarity=0.367 Sum_probs=242.2 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhcccceeccCCC Q lcl|NC_019399. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~ 80 (309) ||+|+|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++|+++ T Consensus 1 m~~~~~~s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~f~vT~~~-------------- 66 (268) T protein:vir:10 1 MSATRPASKTELKDYALRRLGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVTEAI-------------- 66 (268) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechHH-------------- Confidence 999999999999999999999999999999999999999999999999999999999999887654 Q ss_pred ceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccccccchHHHHHHHHHHHHHHHHHccccCc Q lcl|NC_019399. 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) Q Consensus 81 v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~dl~yf~~l~~y~~~lq~~l~~~pd 160 (309) |++.+++ +++|+++|+|+++|+ .++|++||+ +++|+++++|++++++||+|+|+ T Consensus 67 --------rt~~~~~-t~~~t~~~~~~~nyi----------------~~p~~~~Gv-~~vf~~~~~~~~~~~nm~~~~~q 120 (268) T protein:vir:10 67 --------KTQAKGF-TQEGSTPWYGQDNYV----------------STPPGTLGI-NHVYTNIGASSIVPGNIFNIKYQ 120 (268) T ss_pred --------hhccccc-cccccccccCCCcce----------------ecCccccch-hhhhccccccccccchhhcccch Confidence 3444444 567777777755554 589999998 89999999999999999999999 Q ss_pred ceeccccceEEEeeccccceEEEEEeehhhhcchhhhhcccc--eeecccCCCccchhhhhccc---ccccccceeccCC Q lcl|NC_019399. 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTV--GYGTVGPQDSWSLSERYNNP---DHNLVGRVVGQDP 235 (309) Q Consensus 161 ~~~n~~~~~l~i~gn~~~~d~i~~e~~~k~~~d~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~---~~~l~~~~~~~~p 235 (309) ||||+.. ||.+++++..|+..++++|++.++++.+ +++|+.++++|+++..|++| ++++++|+|++|| T Consensus 121 ~~lnd~~-------~~~~~~i~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~l~~~~~~~dp 193 (268) T protein:vir:10 121 IFLNDIY-------SMTHGQILHYFLTSQYLETLDFVTNSQANRRVKWNEHSNRLYLDFDWDDLTVGDYIMVDMTMRQDP 193 (268) T ss_pred hhccccc-------cccceeEEEEEEeeeeecchhhhhccCCCcceeeecccCceeeeeeccCcccchhhhhhhhhccCC Confidence 9999965 5889999999999999999999999875 57778999999999999998 7899999999999 Q ss_pred CcccccccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHH-hccCCCceeeC Q lcl|NC_019399. 236 NVKQGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELY-LLDPPFGIFVG 309 (309) Q Consensus 236 ~~~~~~YN~~WvKdyAtALvK~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~-~~~pPl~~i~G 309 (309) +++|++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+ .+++|.+++|| T Consensus 194 ~~~~~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTvnG~~i~eea~~E~e~L~eel~~~~~~Pp~~liG 268 (268) T protein:vir:10 194 TTFTDMFNDNWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQILEDASKFKEDLEKDIRDRYEIPPLDLIG 268 (268) T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC Confidence 999999999999999999999999999999999999999999999999999999999999996 58889999999 No 15 >protein:vir:104694 Length: 281 # NCBI annotation: T4-like neck protein # Family: family:all:1103 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214352;genbank:gi:61805992;genbank:GeneID:3294213 Probab=100.00 E-value=1.1e-117 Score=661.83 Aligned_cols=260 Identities=26% Similarity=0.422 Sum_probs=215.6 Q ss_pred CCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhcccceeccCCCce Q lcl|NC_019399. 3 GYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSNVF 82 (309) Q Consensus 3 ~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~v~ 82 (309) -|+|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+++++|. ++|+|+++..+++ T Consensus 1 ma~p~s~~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~d~~--~~g~~d~~~~~~~ 78 (281) T protein:vir:10 1 MAKPASRQQLIDYCLRKLGAPVLEINLDDDQIDDSVDDAIQLFNERHFDGVERMFLKYKITQADL--DRGRAKGTDGVGI 78 (281) T ss_pred CCCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhh--hcceeeecCccee Confidence 46999999999999999999999999999999999999999999999999999999999998776 6899999999999 Q ss_pred eEEEEEeeccceeeecCCcccccccC--------Ccceeeeeeccccce--------eeeeeecccccc---chHHHHHH Q lcl|NC_019399. 83 AVTRILRTNIGSITSMDGNATYPWFT--------DFLLGMAGINGGMGT--------SCNRFYGPNAFG---ADLGYFTQ 143 (309) Q Consensus 83 avt~i~r~~~g~~~~~~g~aty~~~~--------d~vlg~s~~~g~~~~--------s~~~~~~~n~fg---~dl~yf~~ 143 (309) +||+|+||+++ |+|+|||+|++ |+++|+++++|+.++ -.++.|.+.+|. ++|.+|++ T Consensus 79 avt~i~~t~~~----~~G~at~~w~~~~ny~~~p~~v~G~~~~~g~~s~~~~~~~f~~~yq~~lndly~~~~~~L~~y~m 154 (281) T protein:vir:10 79 VTTTATSTNIA----GYGTTTSSWYETSNFLQVPDSVVGIEKIFKFDTSTISGGMFSIKYQLFLNDLYNFNSVELLQYSM 154 (281) T ss_pred EEEeeeccccc----cccccccchhhcccceecCccceeeeeeccccccccCcceeecchhhhhhhhccCCchhhhhhhh Confidence 99999998876 79999999976 999999888764432 112222332221 34445556 Q ss_pred HHHHHHHHHHHccccCcceeccccceEEEeeccccceEEEEEeehhhhcchhhhhcccceeecccCCCccchhhhhcccc Q lcl|NC_019399. 144 LTSYMGMMQDMLSPIPDFWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVGPQDSWSLSERYNNPD 223 (309) Q Consensus 144 l~~y~~~lq~~l~~~pd~~~n~~~~~l~i~gn~~~~d~i~~e~~~k~~~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 223 (309) ++||+++++.+|++.|+|+||.++++|.+. +..+ .. .... T Consensus 155 ~~qyl~~~d~v~n~~~~~~~n~~~drL~~d------------~d~~---------------------------~~-~~d~ 194 (281) T protein:vir:10 155 VKSYLEDIDFLLTTDKQVRFNKRQDRLYLD------------IDWG---------------------------AE-SLDN 194 (281) T ss_pred hhhhhhhhHhhcCCCceEEEeeeCCeEEEE------------Eecc---------------------------cc-cCCC Confidence 777777777777777777777766665431 1111 01 1247 Q ss_pred cccccceeccCCCcccccccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhcc-- Q lcl|NC_019399. 224 HNLVGRVVGQDPNVKQGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLD-- 301 (309) Q Consensus 224 ~~l~~~~~~~~p~~~~~~YN~~WvKdyAtALvK~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~~~-- 301 (309) +++++||++.||+++|++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+++. T Consensus 195 ~~~~~~y~~~dP~~~~~~YNnrWvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTvnG~~i~eeA~~E~e~L~eel~~~~~~ 274 (281) T protein:vir:10 195 FLVLDCYRALDPTSFTQVYNDPFLKLYLTALMKRQWGQNLIKFRGVKLPGGIELNGREIFDDAERDIESLRSRMASEYEL 274 (281) T ss_pred ceEEeeeeccCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhccCC Confidence 788999999999999999999999999999999999999999999999999999999999999999999999998655 Q ss_pred CCCceeeC Q lcl|NC_019399. 302 PPFGIFVG 309 (309) Q Consensus 302 pPl~~i~G 309 (309) ||++ +|| T Consensus 275 pP~d-miG 281 (281) T protein:vir:10 275 PPYD-FVG 281 (281) T ss_pred Cccc-ccC Confidence 4444 567 No 16 >protein:vir:103004 Length: 268 # NCBI annotation: gp109 # Family: family:all:1103 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717776;genbank:gi:113200738;genbank:GeneID:4239008 Probab=100.00 E-value=1.1e-117 Score=661.72 Aligned_cols=261 Identities=23% Similarity=0.412 Sum_probs=241.2 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhcccceeccCCC Q lcl|NC_019399. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~ 80 (309) ||+|+|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++|+++. T Consensus 1 Ms~~~~~s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alelf~EyHydG~~k~y~~~~it~~~~------------- 67 (268) T protein:vir:10 1 MSATRPASKTELKNYALRRLGYPAIDINVCDEQLDDLVEEAIDYFQEYHYNGSYQSMMKIEVTDAIK------------- 67 (268) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccchhcceEEEEechHHh------------- Confidence 9999999999999999999999999999999999999999999999999999999999999997664 Q ss_pred ceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccccccchHHHHHHHHHHHHHHHHHccccCc Q lcl|NC_019399. 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) Q Consensus 81 v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~dl~yf~~l~~y~~~lq~~l~~~pd 160 (309) +.|+.++++|+++|+|++|||. ++|+++|+ +++|+++++|+++++++|+|+|+ T Consensus 68 ----------~~g~~~t~~g~~~~~~~~~fi~----------------~pp~v~gv-~~vf~~~~~~~~~~~n~~~~~~q 120 (268) T protein:vir:10 68 ----------TAAQSTTQQGSTNWYENNNYVS----------------LPPGVLGV-NHVYTNIGASSVVPGNIFNIKYQ 120 (268) T ss_pred ----------hhhhhcccCcccccccccccee----------------cCCceeeh-hhhhhcccccccccccccccchh Confidence 2366778999999999999993 68899999 69999999999999999999999 Q ss_pred ceeccccceE--EEeeccccceEEEEEeeh-hhhcchhhhhcccceeecccCCCccchhhhhcc---cccccccceeccC Q lcl|NC_019399. 161 FWFNSANEQL--KVMGNFQKYDLIIVESWT-KSYIDTNKMVGNTVGYGTVGPQDSWSLSERYNN---PDHNLVGRVVGQD 234 (309) Q Consensus 161 ~~~n~~~~~l--~i~gn~~~~d~i~~e~~~-k~~~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~l~~~~~~~~ 234 (309) +|+|+.++++ ++.++|+.+|.|..++|+ +++.++ +++|+.++++++++..|.. .+.++++|++++| T Consensus 121 ~~lnd~~~~~~g~il~y~~~~~~l~~~~~~~~s~~~~--------~~~~~~~~~rly~d~d~~~~~~~~~~~i~~~~~~d 192 (268) T protein:vir:10 121 IFLNDIYAMTHGQILHYFMTSQYLETLDWVTNSQANR--------RVKFNEHQARLYLDFDWDTLQAGDFIMVDLTMRQD 192 (268) T ss_pred hhhcchhhhhHHhhhhhhhccceeehhhhhhcccCcc--------ceEEEeeeceeEEeeccCCcccchhhhhHhhcccC Confidence 9999999999 999999999999888774 555444 4677788888888876654 5778999999999 Q ss_pred CCcccccccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHh-ccCCCceeeC Q lcl|NC_019399. 235 PNVKQGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYL-LDPPFGIFVG 309 (309) Q Consensus 235 p~~~~~~YN~~WvKdyAtALvK~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~-~~pPl~~i~G 309 (309) |+++|++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||++ +++|..++|| T Consensus 193 P~~~~~~YNn~WvKdYatAL~K~~wGq~L~K~qG~qLPGGvTlnG~~i~eeA~~E~e~L~eel~~~~~~Pp~~liG 268 (268) T protein:vir:10 193 PDEYTGMYNDAWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQILEDASQFKKDLEENIRKEYELPPMDLIG 268 (268) T ss_pred CchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeeCHHHHHHHHHHHHHHHHHHHHhhcCCCcceecC Confidence 99999999999999999999999999999999999999999999999999999999999999976 8888899999 No 17 >protein:vir:104694 Length: 281 # NCBI annotation: T4-like neck protein # Family: family:all:1103 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214352;genbank:gi:61805992;genbank:GeneID:3294213 Probab=97.30 E-value=2.7e-06 Score=51.15 Aligned_cols=226 Identities=12% Similarity=0.130 Sum_probs=73.1 Q ss_pred CCCC-CCCCHHHHHHHHHHhcC--------CceEEEEecHHHHHHHHHHHHHHHHHhhcccccceE-EEEEecchhh--- Q lcl|NC_019399. 1 MSGY-NSQNPKELKDVILRRLG--------APIINVELTPDQIYDCIQRALELYGEYHFDGLNKGF-HVFYVGDDEE--- 67 (309) Q Consensus 1 Ms~~-~~~sr~eLKdyilrrLG--------APVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~y-l~~~~~~~d~--- 67 (309) --++ ...--.+++|-+|..-| .--+.+.||+||+.+- -+|.....- -.=++.-+.. T Consensus 23 i~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~d~~~~g-----------~~d~~~~~~~avt~i~~t~~~~~ 91 (281) T protein:vir:10 23 LEINLDDDQIDDSVDDAIQLFNERHFDGVERMFLKYKITQADLDRG-----------RAKGTDGVGIVTTTATSTNIAGY 91 (281) T ss_pred EEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhhcc-----------eeeecCcceeEEEeeeccccccc Confidence 1111 11112334444443332 3567899999998541 011111110 0001000000 Q ss_pred ------hhcccceeccCCCceeEEEEEeeccceeeecCCc---ccccccCCcceeeeeeccccceeeeeeeccccccchH Q lcl|NC_019399. 68 ------KYKTGVFDLRGSNVFAVTRILRTNIGSITSMDGN---ATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADL 138 (309) Q Consensus 68 ------~~~~g~~~~~~~~v~avt~i~r~~~g~~~~~~g~---aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~dl 138 (309) -+....+-..|+.|--++++.- +..++.+++ -.|.+|-.-+...+.+.-. .++ -+ T Consensus 92 G~at~~w~~~~ny~~~p~~v~G~~~~~g---~~s~~~~~~~f~~~yq~~lndly~~~~~~L~------~y~-------m~ 155 (281) T protein:vir:10 92 GTTTSSWYETSNFLQVPDSVVGIEKIFK---FDTSTISGGMFSIKYQLFLNDLYNFNSVELL------QYS-------MV 155 (281) T ss_pred cccccchhhcccceecCccceeeeeecc---ccccccCcceeecchhhhhhhhccCCchhhh------hhh-------hh Confidence 0011112223554444444432 111111111 1222221111111111000 000 01 Q ss_pred HHHHHHHHH-HHHH-HHHccccCcceeccccceEEEeeccccceEEEEEeehhhhcchhhhhcccceeecccCCCcc--- Q lcl|NC_019399. 139 GYFTQLTSY-MGMM-QDMLSPIPDFWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVGPQDSW--- 213 (309) Q Consensus 139 ~yf~~l~~y-~~~l-q~~l~~~pd~~~n~~~~~l~i~gn~~~~d~i~~e~~~k~~~d~~~~~~~~~~~~~~~~~d~~--- 213 (309) .-|....++ .+.. +--++..-+.-|-++.- +.....+.++++++.+ +|=+. ++-.|+ |+| T Consensus 156 ~qyl~~~d~v~n~~~~~~~n~~~drL~~d~d~-----~~~~~d~~~~~~~y~~--~dP~~-----~~~~YN---nrWvKd 220 (281) T protein:vir:10 156 KSYLEDIDFLLTTDKQVRFNKRQDRLYLDIDW-----GAESLDNFLVLDCYRA--LDPTS-----FTQVYN---DPFLKL 220 (281) T ss_pred hhhhhhhHhhcCCCceEEEeeeCCeEEEEEec-----ccccCCCceEEeeeec--cCCcc-----cccccc---hhHHHH Confidence 112222222 1110 11122222222222211 1234456777777663 22111 111111 344 Q ss_pred ----chhhhhcccccccccceeccCCCcccccccchHHHHHHHHHHHHHHHHHHHHhc--CCcCCC Q lcl|NC_019399. 214 ----SLSERYNNPDHNLVGRVVGQDPNVKQGAYNNRWVKDYATALAKELNGQILARHQ--GMMLPG 273 (309) Q Consensus 214 ----~~~~~~~~~~~~l~~~~~~~~p~~~~~~YN~~WvKdyAtALvK~~wGqnL~K~q--g~qLPG 273 (309) .+.+.|.. .|...--.+=|.-. .=|.+=+-+=|.+.+.+.-=+-+.++. .+-+-| T Consensus 221 YaTAL~K~~wGq---~L~K~qG~qLPGGv--TvnG~~i~eeA~~E~e~L~eel~~~~~~pP~dmiG 281 (281) T protein:vir:10 221 YLTALMKRQWGQ---NLIKFRGVKLPGGI--ELNGREIFDDAERDIESLRSRMASEYELPPYDFVG 281 (281) T ss_pred HHHHHHHHHHHH---HHHHhCCccCCCce--eecHHHHHHHHHHHHHHHHHHHhhccCCCcccccC Confidence 23333421 11110000001100 135566667777777777777777764 222333 No 18 >protein:vir:103004 Length: 268 # NCBI annotation: gp109 # Family: family:all:1103 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717776;genbank:gi:113200738;genbank:GeneID:4239008 Probab=96.20 E-value=1.4e-05 Score=47.14 Aligned_cols=223 Identities=19% Similarity=0.236 Sum_probs=89.2 Q ss_pred CCCC-CCCCHHHHHHHHHHhcC--------CceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhcc Q lcl|NC_019399. 1 MSGY-NSQNPKELKDVILRRLG--------APIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKT 71 (309) Q Consensus 1 Ms~~-~~~sr~eLKdyilrrLG--------APVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~ 71 (309) --++ ...--.+++|-+|..-| .--+.+.||++++..- +. -..+|. ..--..+ T Consensus 25 i~InVtd~Qi~DcId~Alelf~EyHydG~~k~y~~~~it~~~~~~g-----~~---~t~~g~-----------~~~~~~~ 85 (268) T protein:vir:10 25 IDINVCDEQLDDLVEEAIDYFQEYHYNGSYQSMMKIEVTDAIKTAA-----QS---TTQQGS-----------TNWYENN 85 (268) T ss_pred EEEecCHHHHHHHHHHHHHHhhhhhccchhcceEEEEechHHhhhh-----hh---cccCcc-----------ccccccc Confidence 1111 11111233333333222 3456889999997311 00 000110 0011112 Q ss_pred cceeccCCCceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccccccchHHHHHHHHHHHHHH Q lcl|NC_019399. 72 GVFDLRGSNVFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMM 151 (309) Q Consensus 72 g~~~~~~~~v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~dl~yf~~l~~y~~~l 151 (309) .++.+ |++|+.|+++. +.+++..++.|+.-.+|...|+..+++++ +|..|+|| +..+|.+++ T Consensus 86 ~fi~~-pp~v~gv~~vf-~~~~~~~~~~~n~~~~~~q~~lnd~~~~~---------------~g~il~y~-~~~~~l~~~ 147 (268) T protein:vir:10 86 NYVSL-PPGVLGVNHVY-TNIGASSVVPGNIFNIKYQIFLNDIYAMT---------------HGQILHYF-MTSQYLETL 147 (268) T ss_pred cceec-CCceeehhhhh-hcccccccccccccccchhhhhcchhhhh---------------HHhhhhhh-hccceeehh Confidence 22222 55555555554 44444444555555555455554444421 12234444 444444444 Q ss_pred HHHcc--ccCcceeccccceEEEeeccc---cceEEEEEeehhhhcchhhhhcccceeecccCCCcc-------chhhhh Q lcl|NC_019399. 152 QDMLS--PIPDFWFNSANEQLKVMGNFQ---KYDLIIVESWTKSYIDTNKMVGNTVGYGTVGPQDSW-------SLSERY 219 (309) Q Consensus 152 q~~l~--~~pd~~~n~~~~~l~i~gn~~---~~d~i~~e~~~k~~~d~~~~~~~~~~~~~~~~~d~~-------~~~~~~ 219 (309) ..+++ ....+.||.+.++|.+.++.+ .+|.+++|...+ +|-+.. +.-|. |+| .+.+.| T Consensus 148 ~~~~~s~~~~~~~~~~~~~rly~d~d~~~~~~~~~~~i~~~~~--~dP~~~---~~~YN-----n~WvKdYatAL~K~~w 217 (268) T protein:vir:10 148 DWVTNSQANRRVKFNEHQARLYLDFDWDTLQAGDFIMVDLTMR--QDPDEY---TGMYN-----DAWLKDYVEALFQQQW 217 (268) T ss_pred hhhhcccCccceEEEeeeceeEEeeccCCcccchhhhhHhhcc--cCCchh---hhhhh-----hhHHHHHHHHHHHHHH Confidence 43333 224466777777776666433 223344333221 111110 00010 233 222233 Q ss_pred cccccccccceeccCCCcccccccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeec Q lcl|NC_019399. 220 NNPDHNLVGRVVGQDPNVKQGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTID 278 (309) Q Consensus 220 ~~~~~~l~~~~~~~~p~~~~~~YN~~WvKdyAtALvK~~wGqnL~K~qg~qLPGGvTln 278 (309) .. .|...--.+=|.-. .=|.+=+-+=|...+++.-=+-+.++. +|-|+-+- T Consensus 218 Gq---~L~K~qG~qLPGGv--TlnG~~i~eeA~~E~e~L~eel~~~~~---~Pp~~liG 268 (268) T protein:vir:10 218 GR---NLSKYDGIQMLGGV--TLNGRQILEDASQFKKDLEENIRKEYE---LPPMDLIG 268 (268) T ss_pred HH---HHHHhcCccCCCce--eeCHHHHHHHHHHHHHHHHHHHHhhcC---CCcceecC Confidence 21 11110000111100 235566666677777766666666665 44444444 No 19 >protein:vir:1780 Length: 67 # NCBI annotation: tail protein B # Family: family:all:824 # MgeID: mge:38 # MgeName: P60 # Cross-refs: genbank:acc:NP_570346;genbank:gi:18640505;genbank:GeneID:932718 Probab=26.80 E-value=0.94 Score=20.73 Aligned_cols=61 Identities=15% Similarity=0.253 Sum_probs=43.6 Q ss_pred CCCCCCCCHHHHHHHHHHhcC-CceEEEEecHHHHH---HHHHHHHHHH--HHhhcccccceEEEEEecch Q lcl|NC_019399. 1 MSGYNSQNPKELKDVILRRLG-APIINVELTPDQIY---DCIQRALELY--GEYHFDGLNKGFHVFYVGDD 65 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLG-APVl~IeVtd~QI~---d~Id~Alqlf--~EyHydG~~k~yl~~~~~~~ 65 (309) |.--...+.-+-.+.|||..| +||..++.+.-.+. ...+++-... .-|||| +++ .+++++| T Consensus 1 ~~~~~~~teLdAVN~~L~aIGesPV~sld~~npdva~a~~iL~~v~~~vqseGW~FN-te~---~~~ltPd 67 (67) T protein:vir:17 1 MAPIKRTSELDALNVKMTNIGQQPIVNINNTNPQVALAKTVLNQVTSDVLTEGWIFN-REL---DYPLTPQ 67 (67) T ss_pred CCCccccchhhHHHHHHHhhCccccccccCCCccHHHHHHHHHHHHHHHhhCCceee-ccC---ceeecCC Confidence 887889999999999999999 68999987765443 3333333333 347888 444 6777765 Done!