Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : YMC-2011 | Genbank acc : NC_018285

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 55

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	45	lcl\|NC_018285.1_cdsid_YP_006561266.1	HHsearch (proba=100.00%)
Portal	43	lcl\|NC_018285.1_cdsid_YP_006561264.1	HHsearch (proba=100.00%)
TermL	41	lcl\|NC_018285.1_cdsid_YP_006561262.1	Blast (e-value=0)
MTP	50	lcl\|NC_018285.1_cdsid_YP_006561271.1	Blast (e-value=2e-96)
Sheath	NOT FOUND
Ad1	46	lcl\|NC_018285.1_cdsid_YP_006561267.1	HHsearch (proba=100.00%)
Hc1	47	lcl\|NC_018285.1_cdsid_YP_006561268.1	HHsearch (proba=100.00%)
Ne1	48	lcl\|NC_018285.1_cdsid_YP_006561269.1	HHsearch (proba=100.00%)
Tc1	49	lcl\|NC_018285.1_cdsid_YP_006561270.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:4997 protein:vir:4953 protein:vir:4830	Sfi21 Sfi19 7201	91 % 91 % 91 %
Portal	protein:vir:4828 protein:vir:4854 protein:vir:4995	7201 DT1 Sfi21	89 % 88 % 87 %
TermL	protein:vir:4852 protein:vir:4993 protein:vir:4950	DT1 Sfi21 Sfi19	84 % 83 % 83 %
MTP	protein:vir:4861 protein:vir:4957 protein:vir:4835	DT1 Sfi19 7201	80 % 79 % 78 %
Ad1	protein:vir:4954 protein:vir:4857 protein:vir:4831	Sfi19 DT1 7201	91 % 88 % 88 %
Hc1	protein:vir:4858 protein:vir:4832 protein:vir:4955	DT1 7201 Sfi19	89 % 87 % 86 %
Ne1	protein:vir:4833 protein:vir:4956 protein:vir:4859	7201 Sfi19 DT1	90 % 89 % 88 %
Tc1	protein:vir:4834 protein:vir:4860 protein:vir:5001	7201 DT1 Sfi21	98 % 92 % 89 %