Virfam_CNT_anal:NC_018273

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Lmd1 | Genbank acc : NC_018273

Category to which the Query Phage was assigned :

The queried phage could not be assigned to any of the 4 canonical Types characterized in Lopes et al (2014)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 40

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	14	lcl\|NC_018273.1_cdsid_YP_006560471.1	HHsearch (proba=100.00%)
Portal	12	lcl\|NC_018273.1_cdsid_YP_006560469.1	HHsearch (proba=100.00%)
TermL	11	lcl\|NC_018273.1_cdsid_YP_006560468.1	Blast (e-value=8e-45)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	16	lcl\|NC_018273.1_cdsid_YP_006560473.1	HHsearch (proba=75.08%)
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:93966 protein:vir:1663 protein:vir:94870	jj50 sk1 P008	22 % 22 % 22 %
Portal	protein:vir:98643 protein:vir:9641 protein:vir:93867	phi3396 315.1 712	20 % 20 % 19 %
TermL	protein:vir:96981 protein:vir:2682 protein:vir:9358	42e phiSLT phi 12	25 % 25 % 25 %
Hc1	protein:vir:395	N15	18 %