Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : sk1 | Genbank acc : NC_001835 | Aclame index mge :34

Category to which the Query Phage was assigned :

The queried phage could not be assigned to any of the 4 canonical Types characterized in Lopes et al (2014)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 56

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|Aclame:protein:vir:1663\|NCBI_annot:unknown\|genbank:acc:NP_044952;genbank:gi:9629659;genbank:Gene	HHsearch (proba=100.00%)
Portal	4	lcl\|Aclame:protein:vir:1661\|NCBI_annot:unknown\|genbank:acc:NP_044950;genbank:gi:9629657;genbank:Gene	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:1659\|NCBI_annot:terminase	Blast (e-value=0)
MTP	11	lcl\|Aclame:protein:vir:1668\|NCBI_annot:major	Blast (e-value=1e-178)
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:93858 protein:vir:1663 protein:vir:93966	712 sk1 jj50	100 % 100 % 99 %
Portal	protein:vir:94002 protein:vir:1661 protein:vir:93867	jj50 sk1 712	100 % 100 % 99 %
TermL	protein:vir:1659 protein:vir:93989 protein:vir:94893	sk1 jj50 P008	100 % 99 % 98 %
MTP	protein:vir:1668 protein:vir:94902 protein:vir:867	sk1 P008 bIL170	100 % 97 % 96 %