Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 14 lcl|NC_017973.1_cdsid_YP_006382935.1 HHsearch (proba=100.00%)
Portal 11 lcl|NC_017973.1_cdsid_YP_006382932.1 HHsearch (proba=100.00%)
TermL 10 lcl|NC_017973.1_cdsid_YP_006382931.1 Blast (e-value=0)
MTP 20 lcl|NC_017973.1_cdsid_YP_006382941.1 Blast (e-value=1e-115)
Sheath NOT FOUND
Ad1 16 lcl|NC_017973.1_cdsid_YP_006382937.1 HHsearch (proba=100.00%)
Hc1 17 lcl|NC_017973.1_cdsid_YP_006382938.1 HHsearch (proba=100.00%)
Ne1 18 lcl|NC_017973.1_cdsid_YP_006382939.1 HHsearch (proba=100.00%)
Tc1 19 lcl|NC_017973.1_cdsid_YP_006382940.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:4226
protein:vir:104085
protein:vir:2430
L5
Che12
D29
95 %
88 %
84 %
Portal protein:vir:4223
protein:vir:2427
protein:vir:104082
L5
D29
Che12
93 %
90 %
89 %
TermL protein:vir:4222
protein:vir:2426
protein:vir:104081
L5
D29
Che12
96 %
91 %
90 %
MTP protein:vir:4232
protein:vir:104093
protein:vir:2437
L5
Che12
D29
100 %
93 %
92 %
Ad1 protein:vir:4228
protein:vir:2432
protein:vir:104088
L5
D29
Che12
100 %
84 %
82 %
Hc1 protein:vir:4229
protein:vir:104090
protein:vir:2434
L5
Che12
D29
99 %
93 %
87 %
Ne1 protein:vir:4230
protein:vir:2435
protein:vir:104091
L5
D29
Che12
98 %
78 %
61 %
Tc1 protein:vir:4231
protein:vir:2436
protein:vir:104092
L5
D29
Che12
99 %
82 %
77 %