Query lcl|NC_017973.1_cdsid_YP_006382940.1 [gene=A321_gp76] [protein=hypothetical protein] [protein_id=YP_006382940.1] [location=13795..14214] Match_columns 139 No_of_seqs 11 out of 13 Neff 1.9 Searched_HMMs 1612 Date Thu Nov 7 13:55:26 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_19 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_19_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:4231 Length: 139 # 100.0 2E-102 1E-105 577.8 10.5 139 1-139 1-139 (139) 2 protein:vir:2436 Length: 139 # 100.0 2E-101 9E-105 573.3 10.7 139 1-139 1-139 (139) 3 protein:vir:104092 Length: 140 100.0 3E-100 2E-103 566.5 10.5 139 1-139 1-139 (140) 4 protein:vir:7777 Length: 135 # 100.0 5.7E-98 4E-101 553.7 9.6 135 1-137 1-135 (135) 5 protein:vir:2348 Length: 148 # 100.0 1.2E-96 7E-100 546.5 9.6 137 1-137 2-148 (148) 6 protein:vir:78481 Length: 148 100.0 1.3E-96 8E-100 546.3 9.4 137 1-137 2-148 (148) 7 protein:vir:78292 Length: 148 100.0 1.3E-96 8E-100 546.3 9.4 137 1-137 2-148 (148) 8 protein:vir:99005 Length: 170 43.0 0.4 0.00025 22.8 4.3 132 1-139 1-159 (170) 9 protein:vir:9576 Length: 131 # 31.1 0.69 0.00043 21.5 3.6 75 65-139 1-124 (131) 10 protein:vir:98426 Length: 131 25.1 2.1 0.0013 18.8 6.8 125 1-139 1-131 (131) 11 protein:vir:1643 Length: 111 # 23.3 2.3 0.0014 18.6 6.2 111 6-133 1-111 (111) No 1 >protein:vir:4231 Length: 139 # NCBI annotation: predicted 15.7Kd protein # Family: family:all:2820 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039686;swissprot:sw:q05228;genbank:gi:9625452;uniprot:Q05228;genbank:GeneID:2942946 Probab=100.00 E-value=2.3e-102 Score=577.85 Aligned_cols=139 Identities=99% Similarity=1.468 Sum_probs=138.9 Q ss_pred CCCCchhHHHHHHHhhcCCCCCCceeeeccCCCCcccCCeeeEEecCCCCCcccchhhcCceeeeeeccccCchhhHHHH Q lcl|NC_017973. 1 MARMPRVQAVAAPILRSNPRLEGVTVTTWVPDVDFREFPMINLRRIGGTRNPNAPTLHTLPVVEMTAYTRDGLIETEELY 80 (139) Q Consensus 1 m~k~prvq~VvlpiLR~~~~l~~v~v~tWv~diDyR~fP~vniRRigG~R~p~~P~~~~lPViEmtaYt~egl~eteelY 80 (139) |+||||||+||+||||++|+|+||+|+|||+|||||+|||||||||||+||||+|++|++||||||||+++||||||||| T Consensus 1 m~~~Prvq~Vv~PiLR~~P~l~~v~V~tWv~diD~R~FPminvRRiGG~R~p~~Pt~~~~PViEmTaY~~~gLietE~lY 80 (139) T protein:vir:42 1 MARMPRVQAVAAPILRSDPRLEGVTVTTWVPDVDFREFPMINLRRIGGTRNPNAPTLHTLPVVEMTAYTRDGLIETEELY 80 (139) T ss_pred CCcCchhHHHHhhhhcCCccccCceeecccccCccccccceeeeecCCCCCCCCcchhccceeeeeeccccCccchHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHhhcCCCCccceehhhhhhccccCCccccchhhhhhhhhhcccCCcccC Q lcl|NC_017973. 81 ETALEVLYDAVENGTQTPAGYLTSIFETMGATQFSSLYQDSWRIQGLIRLGIRRPRTTL 139 (139) Q Consensus 81 e~aLevLY~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f~dsWRvqGLI~lGiRppR~t~ 139 (139) |||||||||||++||||||||||||+|||||||||||||||||||||||||+||||||| T Consensus 81 EdaLevLYdAv~~q~qTPaGYLhSi~ETmGAtqfsS~f~dsWRvqGLI~LGvR~Pr~t~ 139 (139) T protein:vir:42 81 ETALEVLYDAVENGTQTPAGYLTSIFETMGATQFSSLYQDSWRIQGLIRLGVRRPRTTL 139 (139) T ss_pred HHHHHHHHHHHhccccCcchhhhhhhhhhccccCCccchhhhhhhhhhhhcccCCcccC Confidence 99999999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:2436 Length: 139 # NCBI annotation: gp22 # Family: family:all:2820 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046838;genbank:gi:9630406;genbank:GeneID:1261583 Probab=100.00 E-value=1.5e-101 Score=573.31 Aligned_cols=139 Identities=82% Similarity=1.327 Sum_probs=138.8 Q ss_pred CCCCchhHHHHHHHhhcCCCCCCceeeeccCCCCcccCCeeeEEecCCCCCcccchhhcCceeeeeeccccCchhhHHHH Q lcl|NC_017973. 1 MARMPRVQAVAAPILRSNPRLEGVTVTTWVPDVDFREFPMINLRRIGGTRNPNAPTLHTLPVVEMTAYTRDGLIETEELY 80 (139) Q Consensus 1 m~k~prvq~VvlpiLR~~~~l~~v~v~tWv~diDyR~fP~vniRRigG~R~p~~P~~~~lPViEmtaYt~egl~eteelY 80 (139) |++|||||+||+||||++|+++||+|+|||+|||||+|||||||||||+||||+|++|++||||||||+++||||||||| T Consensus 1 m~~~Prvq~VV~PiLR~~P~la~v~v~tWv~diD~R~FPminvRRiGG~R~~~~P~~~~~PViEmtaY~~~gLie~E~lY 80 (139) T protein:vir:24 1 MGAMPRVQSVVAPILREDPRLAGVTIVTWVPDIDFREFPMINIRRIGGIRNANAPKLHSLPVVEMSAYSTDGLIECEELY 80 (139) T ss_pred CCCCchhhhHHhhhhhcCcccCCceeeeecccCccccccceeeeecCCCCCcccchhhccceeeeeeccccCccchHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHhhcCCCCccceehhhhhhccccCCccccchhhhhhhhhhcccCCcccC Q lcl|NC_017973. 81 ETALEVLYDAVENGTQTPAGYLTSIFETMGATQFSSLYQDSWRIQGLIRLGIRRPRTTL 139 (139) Q Consensus 81 e~aLevLY~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f~dsWRvqGLI~lGiRppR~t~ 139 (139) ||||||||||||+||||||||||||+|||||||||||||||||||||||||+||||||- T Consensus 81 EdaLevLYdAvk~q~qTPaGYL~Si~ETmGAtqfsS~f~dsWRvqGLI~LGvR~Pr~tt 139 (139) T protein:vir:24 81 ETALEVLYDAVKNGTQTPAGYLSSIFETMGATQFSSLYQDSWRIQGLIRLGVRTPRSTT 139 (139) T ss_pred HHHHHHHHHHHhccccCcchhhhhHhHhhccccCCccchhhhhhhhhhhhcccCCCCCC Confidence 99999999999999999999999999999999999999999999999999999999999 No 3 >protein:vir:104092 Length: 140 # NCBI annotation: gp24 # Family: family:all:2820 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655603;genbank:gi:109392474;genbank:GeneID:4156960 Probab=100.00 E-value=2.7e-100 Score=566.48 Aligned_cols=139 Identities=77% Similarity=1.236 Sum_probs=138.5 Q ss_pred CCCCchhHHHHHHHhhcCCCCCCceeeeccCCCCcccCCeeeEEecCCCCCcccchhhcCceeeeeeccccCchhhHHHH Q lcl|NC_017973. 1 MARMPRVQAVAAPILRSNPRLEGVTVTTWVPDVDFREFPMINLRRIGGTRNPNAPTLHTLPVVEMTAYTRDGLIETEELY 80 (139) Q Consensus 1 m~k~prvq~VvlpiLR~~~~l~~v~v~tWv~diDyR~fP~vniRRigG~R~p~~P~~~~lPViEmtaYt~egl~eteelY 80 (139) |+||||||+||+||||+++.+.||+|+|||+|||||+|||||||||||+||||+|++|++||||||||++|||||||||| T Consensus 1 m~~~Prvq~VV~PiLR~~~~l~~v~v~tWv~diD~R~FPminvRRiGG~R~p~~P~~~~~PViEmtaY~~~gLie~E~lY 80 (140) T protein:vir:10 1 MARMPRVQKVVAPILRNALTLDGVAITTWVPDVDYREFPMINIRRIGGIRNPKAPLLHTNPVIEMSAYSTEGLIECEELY 80 (140) T ss_pred CCCCchhHHHHHhHhhcCCCccceeeeccccccccccccceeeeecCCCCCCccchhhhcceeeeeeccccCccchHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHhhcCCCCccceehhhhhhccccCCccccchhhhhhhhhhcccCCcccC Q lcl|NC_017973. 81 ETALEVLYDAVENGTQTPAGYLTSIFETMGATQFSSLYQDSWRIQGLIRLGIRRPRTTL 139 (139) Q Consensus 81 e~aLevLY~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f~dsWRvqGLI~lGiRppR~t~ 139 (139) |||||||||||++||||||||||||+|||||||||||||||||||||||||+|||||+- T Consensus 81 EdaLevLY~Av~~Q~qTPaGYLhSi~ETmGAtqfsS~f~dsWRvqGLIrLGvR~Pr~~t 139 (140) T protein:vir:10 81 EDALEELYLAVQSQTQTPAGYLTSIFETMGATQFSSLYQDSWRVQGLIRLGVRRPRSNT 139 (140) T ss_pred HHHHHHHHHHHhhhccCcchhhhhhhhhhccccCCccchhhhhhhhhhhhcccCCCCCC Confidence 99999999999999999999999999999999999999999999999999999999988 No 4 >protein:vir:7777 Length: 135 # NCBI annotation: gp22 # Family: family:all:2820 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817611;genbank:gi:29566041;genbank:GeneID:1259235 Probab=100.00 E-value=5.7e-98 Score=553.70 Aligned_cols=135 Identities=67% Similarity=1.119 Sum_probs=134.2 Q ss_pred CCCCchhHHHHHHHhhcCCCCCCceeeeccCCCCcccCCeeeEEecCCCCCcccchhhcCceeeeeeccccCchhhHHHH Q lcl|NC_017973. 1 MARMPRVQAVAAPILRSNPRLEGVTVTTWVPDVDFREFPMINLRRIGGTRNPNAPTLHTLPVVEMTAYTRDGLIETEELY 80 (139) Q Consensus 1 m~k~prvq~VvlpiLR~~~~l~~v~v~tWv~diDyR~fP~vniRRigG~R~p~~P~~~~lPViEmtaYt~egl~eteelY 80 (139) |+||||||+||+||||++ ||||+|+|||+|||||+|||||||||||+||||+|++|++||||||||++|||||||||| T Consensus 1 ~~~~Prvq~VV~PiLR~~--L~~v~VgtWvediD~R~FPlinvRRvGG~R~p~~P~~~~~PViEmTaY~~~gL~etEqlY 78 (135) T protein:vir:77 1 MAQMPRVQAVVLPILRAA--LPDVKVGSWIEDIDYRTFPMVNVRRVGGPRHETRPDKLALPVIEMTAYGREGLVETEKLY 78 (135) T ss_pred CCCCchhHHHHHHHHhhh--cCCceecccccccccccccceeeeecCCCCCCccchhhhcchheeeeccccCccchHHHH Confidence 999999999999999996 699999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHhhcCCCCccceehhhhhhccccCCccccchhhhhhhhhhcccCCcc Q lcl|NC_017973. 81 ETALEVLYDAVENGTQTPAGYLTSIFETMGATQFSSLYQDSWRIQGLIRLGIRRPRT 137 (139) Q Consensus 81 e~aLevLY~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f~dsWRvqGLI~lGiRppR~ 137 (139) |||||||||||++|+||||||||||+||||||||||||||||||||||+||+||||| T Consensus 79 EdaL~vLYdAv~~Q~~TPaGYLhSi~ETmGAtqfsS~f~dsWRvqGLI~LGvRpPr~ 135 (135) T protein:vir:77 79 EDALEALYDAVKHQTQTPAGYLHSIKETMGATQFSSLFQDSWRVQGLIQLGVRPPRS 135 (135) T ss_pred HHHHHHHHHHHhhhccCcchhhhhHHHhhccccCCcchhhhhHhhhhhhhcccCCCC Confidence 999999999999999999999999999999999999999999999999999999999 No 5 >protein:vir:2348 Length: 148 # NCBI annotation: gp18 # Family: family:all:2820 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075285;genbank:gi:12657872;genbank:GeneID:920060 Probab=100.00 E-value=1.2e-96 Score=546.47 Aligned_cols=137 Identities=55% Similarity=0.938 Sum_probs=135.5 Q ss_pred CCCCchhHHHHHHHhhcC----------CCCCCceeeeccCCCCcccCCeeeEEecCCCCCcccchhhcCceeeeeeccc Q lcl|NC_017973. 1 MARMPRVQAVAAPILRSN----------PRLEGVTVTTWVPDVDFREFPMINLRRIGGTRNPNAPTLHTLPVVEMTAYTR 70 (139) Q Consensus 1 m~k~prvq~VvlpiLR~~----------~~l~~v~v~tWv~diDyR~fP~vniRRigG~R~p~~P~~~~lPViEmtaYt~ 70 (139) -+||||||+||+||||+| |+++||+|+|||+|||||+|||||||||||+||||+|++|++||||||||++ T Consensus 2 a~k~Prvq~VV~PiLR~~~~~~~~~~~vp~l~~v~VgtWvediD~R~FPlinvRRvGG~R~p~~P~~~~~PViEmTaY~~ 81 (148) T protein:vir:23 2 AGKLPIVGEVVLPILRGHEDLSNPISTVPSLAGVHVGTWVEDIDSRTFPLITVRRVGGTRSPEHPTLFTQPVVEMTAYSA 81 (148) T ss_pred CcccchhhhhhhhhhcccccccccccccccccCceecccccccccccccceeeeecCCCCCCccchhhhcccceeeeccc Confidence 569999999999999998 8899999999999999999999999999999999999999999999999999 Q ss_pred cCchhhHHHHHHHHHHHHHHHhhcCCCCccceehhhhhhccccCCccccchhhhhhhhhhcccCCcc Q lcl|NC_017973. 71 DGLIETEELYETALEVLYDAVENGTQTPAGYLTSIFETMGATQFSSLYQDSWRIQGLIRLGIRRPRT 137 (139) Q Consensus 71 egl~eteelYe~aLevLY~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f~dsWRvqGLI~lGiRppR~ 137 (139) +|||||||||||||||||||||+||||||||||||+||||||||||||||||||||||+|||||||| T Consensus 82 ~gL~etEqlYEdaLevLYdAv~~Q~~TPaGYLhSi~ETmGAtqfsS~f~dsWRvqGLI~LGvRpPr~ 148 (148) T protein:vir:23 82 ADLPTTEQMYEDALEVLYRAARLQTKTPAGYLHSVTETLGASHGPSPFDRTWRVFGLIRLGIRPPKN 148 (148) T ss_pred cCccchHHHHHHHHHHHHHHHhhhccCcchhhhhhhHhhccccCCcchhhhhhhhhhhhhcccCCCC Confidence 9999999999999999999999999999999999999999999999999999999999999999999 No 6 >protein:vir:78481 Length: 148 # NCBI annotation: gp19 # Family: family:all:2820 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491590;genbank:gi:157786413;genbank:GeneID:5625633 Probab=100.00 E-value=1.3e-96 Score=546.28 Aligned_cols=137 Identities=55% Similarity=0.938 Sum_probs=135.5 Q ss_pred CCCCchhHHHHHHHhhcC----------CCCCCceeeeccCCCCcccCCeeeEEecCCCCCcccchhhcCceeeeeeccc Q lcl|NC_017973. 1 MARMPRVQAVAAPILRSN----------PRLEGVTVTTWVPDVDFREFPMINLRRIGGTRNPNAPTLHTLPVVEMTAYTR 70 (139) Q Consensus 1 m~k~prvq~VvlpiLR~~----------~~l~~v~v~tWv~diDyR~fP~vniRRigG~R~p~~P~~~~lPViEmtaYt~ 70 (139) -+||||||+||+||||+| |+++||+|+|||+|||||+|||||||||||+||||+|++|++||||||||++ T Consensus 2 a~k~Prvq~VV~PiLR~~~~~~~~~~~vp~l~~v~VgtWvediD~R~FPlinvRRvGG~R~p~~P~~~~~PViEmTaY~~ 81 (148) T protein:vir:78 2 AGKLPIVGEVVLPILRGHEDLSEPISTVPSLAGVHVGTWVEDIDSRTFPLITVRRVGGTRSPEHPTLFTQPVVEMTAYSA 81 (148) T ss_pred CcccchhhhhhhhhhcccccccccccccccccCceecccccccccccccceeeeecCCCCCCccchhhhcchheeeeccc Confidence 569999999999999998 8899999999999999999999999999999999999999999999999999 Q ss_pred cCchhhHHHHHHHHHHHHHHHhhcCCCCccceehhhhhhccccCCccccchhhhhhhhhhcccCCcc Q lcl|NC_017973. 71 DGLIETEELYETALEVLYDAVENGTQTPAGYLTSIFETMGATQFSSLYQDSWRIQGLIRLGIRRPRT 137 (139) Q Consensus 71 egl~eteelYe~aLevLY~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f~dsWRvqGLI~lGiRppR~ 137 (139) +|||||||||||||||||||||+||||||||||||+||||||||||||||||||||||+|||||||| T Consensus 82 ~gL~etEqlYEdaLevLYdAv~~Q~~TPaGYLhSi~ETmGAtqfsS~f~dsWRvqGLI~LGvRpPr~ 148 (148) T protein:vir:78 82 ADLPTTEQMYEDALEVLYRAARLQTKTPAGYLHSVTETLGASHGPSPFDRTWRVFGLIRLGIRPPKN 148 (148) T ss_pred cCCcchHHHHHHHHHHHHHHHhhhccCcchhhhhhhhhhccccCCcchhhhhhhhhhhhhcccCCCC Confidence 9999999999999999999999999999999999999999999999999999999999999999999 No 7 >protein:vir:78292 Length: 148 # NCBI annotation: gp19 # Family: family:all:2820 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491671;genbank:gi:157786495;genbank:GeneID:5625770 Probab=100.00 E-value=1.3e-96 Score=546.28 Aligned_cols=137 Identities=55% Similarity=0.938 Sum_probs=135.5 Q ss_pred CCCCchhHHHHHHHhhcC----------CCCCCceeeeccCCCCcccCCeeeEEecCCCCCcccchhhcCceeeeeeccc Q lcl|NC_017973. 1 MARMPRVQAVAAPILRSN----------PRLEGVTVTTWVPDVDFREFPMINLRRIGGTRNPNAPTLHTLPVVEMTAYTR 70 (139) Q Consensus 1 m~k~prvq~VvlpiLR~~----------~~l~~v~v~tWv~diDyR~fP~vniRRigG~R~p~~P~~~~lPViEmtaYt~ 70 (139) -+||||||+||+||||+| |+++||+|+|||+|||||+|||||||||||+||||+|++|++||||||||++ T Consensus 2 a~k~Prvq~VV~PiLR~~~~~~~~~~~vp~l~~v~VgtWvediD~R~FPlinvRRvGG~R~p~~P~~~~~PViEmTaY~~ 81 (148) T protein:vir:78 2 AGKLPIVGEVVLPILRGHEDLSEPISTVPSLAGVHVGTWVEDIDSRTFPLITVRRVGGTRSPEHPTLFTQPVVEMTAYSA 81 (148) T ss_pred CcccchhhhhhhhhhcccccccccccccccccCceecccccccccccccceeeeecCCCCCCccchhhhcchheeeeccc Confidence 569999999999999998 8899999999999999999999999999999999999999999999999999 Q ss_pred cCchhhHHHHHHHHHHHHHHHhhcCCCCccceehhhhhhccccCCccccchhhhhhhhhhcccCCcc Q lcl|NC_017973. 71 DGLIETEELYETALEVLYDAVENGTQTPAGYLTSIFETMGATQFSSLYQDSWRIQGLIRLGIRRPRT 137 (139) Q Consensus 71 egl~eteelYe~aLevLY~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f~dsWRvqGLI~lGiRppR~ 137 (139) +|||||||||||||||||||||+||||||||||||+||||||||||||||||||||||+|||||||| T Consensus 82 ~gL~etEqlYEdaLevLYdAv~~Q~~TPaGYLhSi~ETmGAtqfsS~f~dsWRvqGLI~LGvRpPr~ 148 (148) T protein:vir:78 82 ADLPTTEQMYEDALEVLYRAARLQTKTPAGYLHSVTETLGASHGPSPFDRTWRVFGLIRLGIRPPKN 148 (148) T ss_pred cCCcchHHHHHHHHHHHHHHHhhhccCcchhhhhhhhhhccccCCcchhhhhhhhhhhhhcccCCCC Confidence 9999999999999999999999999999999999999999999999999999999999999999999 No 8 >protein:vir:99005 Length: 170 # NCBI annotation: gp34 # Family: family:all:32655 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655899;genbank:gi:109521471;genbank:GeneID:4157970 Probab=42.95 E-value=0.4 Score=22.80 Aligned_cols=132 Identities=19% Similarity=0.286 Sum_probs=86.3 Q ss_pred CCCC-ch---------hHHHHHHHhhcCCCCCCceeeeccCCC------------CcccCCeeeEEecCCCCCcccchhh Q lcl|NC_017973. 1 MARM-PR---------VQAVAAPILRSNPRLEGVTVTTWVPDV------------DFREFPMINLRRIGGTRNPNAPTLH 58 (139) Q Consensus 1 m~k~-pr---------vq~VvlpiLR~~~~l~~v~v~tWv~di------------DyR~fP~vniRRigG~R~p~~P~~~ 58 (139) |+-+ |. |-....+++..- +|.+.+++|++|= -|-+=|.+-+-|-+|.++-+.- - T Consensus 1 Ma~~lPDW~egda~l~v~dl~~q~~qkl--~Pn~~v~~WipdDw~~~~~~~da~pt~~~~Ptl~~~R~~Gq~D~d~~--~ 76 (170) T protein:vir:99 1 MADFLPDWWEGPEYLDVEDLFAQHFQKL--LPNVRVCHWIQPDWYIPTGFVDATPTYGTEPTLRLWRQPGQRDDEST--T 76 (170) T ss_pred CccccCCccCCcHHHHHHHHHHHHHHHh--CCCceeEeecCcccccccccccccccccccceEEEEecCCccchhhc--c Confidence 7666 32 222334444443 5889999999991 1677799999999998887653 4 Q ss_pred cCceeeeeeccccCchhhHHHHHHHHHHHH-----HHHhhcCCCCccceehhhhhhccccCCccccchhhhhhhhhhccc Q lcl|NC_017973. 59 TLPVVEMTAYTRDGLIETEELYETALEVLY-----DAVENGTQTPAGYLTSIFETMGATQFSSLYQDSWRIQGLIRLGIR 133 (139) Q Consensus 59 ~lPViEmtaYt~egl~eteelYe~aLevLY-----~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f~dsWRvqGLI~lGiR 133 (139) +-|.+|+-+-+.. --+.-+|-+=|-++|- +.++.--|- -| ++|+.|-.|--+-+-.=.|.--|--+-..-+| T Consensus 77 Da~~lq~~vvt~S-r~DS~~l~~fvr~im~a~~~g~~~~~~~qv-v~-i~sv~e~~Gp~~iP~~~~D~r~V~atyevtv~ 153 (170) T protein:vir:99 77 DAPLLQFAAVTRS-HGDSIQLIEFVHTVMRALNNGHKIKYNGQL-VG-IKNVGLWLGPQTIPEGPIDEFFVPVTYKFTVA 153 (170) T ss_pred chhhhhhhhhccC-hHHHHHHHHHHHHHHHhhhcCCeeeeCCce-EE-EEEeccccccccCCCCCccceEeeeEEEEEee Confidence 5666777665432 1133455555555553 222211111 22 78888889999988887888888888888889 Q ss_pred CCcccC Q lcl|NC_017973. 134 RPRTTL 139 (139) Q Consensus 134 ppR~t~ 139 (139) -||--- T Consensus 154 ~~r~~p 159 (170) T protein:vir:99 154 GKKLQP 159 (170) T ss_pred cccCCc Confidence 888644 No 9 >protein:vir:9576 Length: 131 # NCBI annotation: gp42 # Family: family:all:1271 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862881;genbank:gi:32469473;genbank:GeneID:1461318 Probab=31.05 E-value=0.69 Score=21.46 Aligned_cols=75 Identities=25% Similarity=0.226 Sum_probs=36.1 Q ss_pred eeeccccC--------chhhH-----HHHHH-----------------------------HHHHHHHHHhhcCCCCccce Q lcl|NC_017973. 65 MTAYTRDG--------LIETE-----ELYET-----------------------------ALEVLYDAVENGTQTPAGYL 102 (139) Q Consensus 65 mtaYt~eg--------l~ete-----elYe~-----------------------------aLevLY~Avr~Qt~TpaGYl 102 (139) |++|-+-. |-.-| .|-++ +-.|--++|+....+|+++. T Consensus 1 m~~fAtv~D~~~rwr~Lt~~E~~ra~~LL~~As~~ir~~~p~~~~~l~~~~~~~~~~~~~~~~V~~~~V~Ral~~~~~~~ 80 (131) T protein:vir:95 1 MENFATVEDLKKLWRALKFDEEKRAEALLEVVSHSLRVEAKKVGKDLDGLVATDPSFTMVVKSVTVDVVARTLMTSTDQE 80 (131) T ss_pred CCccCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCccchHHHHHHHHHHHHHHhcCCCCCC Confidence 88776521 11111 12222 23356677888888775542 Q ss_pred --ehhhhhhccccCCccccchhhh-----hhhhhhcccCCcccC Q lcl|NC_017973. 103 --TSIFETMGATQFSSLYQDSWRI-----QGLIRLGIRRPRTTL 139 (139) Q Consensus 103 --~si~ETmGaTqfsS~f~dsWRv-----qGLI~lGiRppR~t~ 139 (139) +|..||-|.-++|--|...|.= .=+-+||++.+|--- T Consensus 81 G~tq~S~TaG~ys~S~t~~~p~g~lylt~~e~~~LGl~~~r~~~ 124 (131) T protein:vir:95 81 PMTQVAESALGYSFSGSYLVPGGGLFIKDSELKRLGLKKQRYGV 124 (131) T ss_pred CceeeeeecccceeeeeeecCCCCceeChHHHHHhCCCCCceeE Confidence 2333444433333222222111 113578998887654 No 10 >protein:vir:98426 Length: 131 # NCBI annotation: ORF6 # Family: family:all:12105 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958284;genbank:gi:41057258;uniprot:Q38599;genbank:GeneID:2732810 Probab=25.13 E-value=2.1 Score=18.83 Aligned_cols=125 Identities=23% Similarity=0.278 Sum_probs=73.4 Q ss_pred CC--CCchhHHHHHHHhhcC--CCCCCceeeeccCCCCcccCCeeeEEecCCCCCcccchhhcCceeeeeeccccCchhh Q lcl|NC_017973. 1 MA--RMPRVQAVAAPILRSN--PRLEGVTVTTWVPDVDFREFPMINLRRIGGTRNPNAPTLHTLPVVEMTAYTRDGLIET 76 (139) Q Consensus 1 m~--k~prvq~VvlpiLR~~--~~l~~v~v~tWv~diDyR~fP~vniRRigG~R~p~~P~~~~lPViEmtaYt~egl~et 76 (139) |+ -+|..++|+.-+||+. ....+|+|.|=++- =|--.+|-|.|+||.|+-. ..+.|-+.+-+|... .-++ T Consensus 1 ~~~i~~pda~~v~~~~lr~~l~a~~~~V~V~t~vP~--~RP~rfV~VertgG~~~~~---~~Dr~~L~Vq~W~~t-~~~A 74 (131) T protein:vir:98 1 MPPILMPDAVAVIAGYLRAVLVARGVTVPVGSRVPS--PRPARFVRIERIGGPANTV---VTDRPRLDVHCWGSS-EEDA 74 (131) T ss_pred CCCccCCchhHHHHHHHHHHHHhcCCceEecccCCC--CCCceEEEEEecCCCcCCc---cccceEEEEEecCCC-HHHH Confidence 65 4688999999999985 34466777776664 3567899999999975432 568889999999764 4588 Q ss_pred HHHHHHHHHHHHHHHhhcCCCCccceehhhhhhccccCCccc--cchhhhhhhhhhcccCCcccC Q lcl|NC_017973. 77 EELYETALEVLYDAVENGTQTPAGYLTSIFETMGATQFSSLY--QDSWRIQGLIRLGIRRPRTTL 139 (139) Q Consensus 77 eelYe~aLevLY~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f--~dsWRvqGLI~lGiRppR~t~ 139 (139) ++|-+.|.+.|..+=.-. .--.-.-.|+=|---|.-+= ++-|..-|=+-+ |- +.| T Consensus 75 ~~La~~vr~~ll~~~~~~----g~~~~~~~e~~gpy~~PD~es~~~Ryq~tv~l~~--r~--~~~ 131 (131) T protein:vir:98 75 HDLMQLCRALLGAARGSH----GDTVLARPATGGPQFLPDAETGAARWAFTLDITM--RG--HAL 131 (131) T ss_pred HHHHHHHHHHHhhccccc----chheeccccCCCCCcCCCCCCCCceeEEEEEEEe--ee--ccC Confidence 899999998887431111 00111123333322332211 222333332111 10 111 No 11 >protein:vir:1643 Length: 111 # NCBI annotation: hypothetical protein # Family: family:all:1269 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695064;genbank:gi:23455755;genbank:GeneID:955492 Probab=23.27 E-value=2.3 Score=18.57 Aligned_cols=111 Identities=13% Similarity=0.155 Sum_probs=67.2 Q ss_pred hhHHHHHHHhhcCCCCCCceeeeccCCCCcccCCeeeEEecCCCCCcccchhhcCceeeeeeccccCchhhHHHHHHHHH Q lcl|NC_017973. 6 RVQAVAAPILRSNPRLEGVTVTTWVPDVDFREFPMINLRRIGGTRNPNAPTLHTLPVVEMTAYTRDGLIETEELYETALE 85 (139) Q Consensus 6 rvq~VvlpiLR~~~~l~~v~v~tWv~diDyR~fP~vniRRigG~R~p~~P~~~~lPViEmtaYt~egl~eteelYe~aLe 85 (139) -+-.+|.-.|++++++| +.+=++ .=|-=++|-|.|+||.++. .+..|-+...+|... +-|.+||=+.+.+ T Consensus 1 miE~~i~~~L~~~l~Vp---v~~e~p--~~~P~~FV~vErtGG~~~~----~~~~~~lAVq~w~~S-~~eAa~La~~v~~ 70 (111) T protein:vir:16 1 MIEIIIKNFLDTHLSVS---SFLEKK--GEMPLSYILFEKTGSSKSN----HLLSSTFAFQSYAPS-MYEAAKLNEQLKE 70 (111) T ss_pred ChHHhHHHHHhhcCCce---eEeecC--CCCCCceEEEEecCCcccc----ccccceEEEEecchh-HHHHHHHHHHHHH Confidence 68899999999998654 555443 3345568999999999876 458899999999753 4478888888777 Q ss_pred HHHHHHhhcCCCCccceehhhhhhccccCCccccchhhhhhhhhhccc Q lcl|NC_017973. 86 VLYDAVENGTQTPAGYLTSIFETMGATQFSSLYQDSWRIQGLIRLGIR 133 (139) Q Consensus 86 vLY~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f~dsWRvqGLI~lGiR 133 (139) +|-+.. ..-.=-+--+.| --+|+-.=...-|-|-.+++-.= T Consensus 71 ~l~~l~-~~~~I~av~~~s------~ynf~d~~tk~~RYQav~~i~~~ 111 (111) T protein:vir:16 71 VVERLI-ELNEISNVSLNS------DYNFTDTETKEYRYQAVFDINHY 111 (111) T ss_pred HHhhcc-ccccceeeecCC------CCcCCCCCCCCceEEEEEEEeeC Confidence 774432 111111111111 12332222233455554444333 Done!