Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : RGL3 | Genbank acc : NC_016650

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 66

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|NC_016650.1_cdsid_YP_005086964.1	HHsearch (proba=100.00%)
Portal	2	lcl\|NC_016650.1_cdsid_YP_005086960.1	HHsearch (proba=100.00%)
TermL	1	lcl\|NC_016650.1_cdsid_YP_005086959.1	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	8	lcl\|NC_016650.1_cdsid_YP_005086966.1	HHsearch (proba=100.00%)
Hc1	9	lcl\|NC_016650.1_cdsid_YP_005086967.1	HHsearch (proba=100.00%)
Ne1	10	lcl\|NC_016650.1_cdsid_YP_005086968.1	HHsearch (proba=100.00%)
Tc1	11	lcl\|NC_016650.1_cdsid_YP_005086969.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:104085 protein:vir:7771 protein:vir:4226	Che12 Bxz2 L5	50 % 50 % 49 %
Portal	protein:vir:7768 protein:vir:104082 protein:vir:4223	Bxz2 Che12 L5	51 % 50 % 50 %
TermL	protein:vir:2426 protein:vir:7767 protein:vir:104081	D29 Bxz2 Che12	66 % 65 % 64 %
Ad1	protein:vir:7773 protein:vir:4228 protein:vir:78478	Bxz2 L5 U2	52 % 49 % 46 %
Hc1	protein:vir:7775 protein:vir:104090 protein:vir:4229	Bxz2 Che12 L5	59 % 56 % 56 %
Ne1	protein:vir:78503 protein:vir:78298 protein:vir:7776	U2 Bethlehem Bxz2	33 % 33 % 33 %
Tc1	protein:vir:7777 protein:vir:104092 protein:vir:4231	Bxz2 Che12 L5	67 % 56 % 56 %