Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Shfl1 | Genbank acc : NC_015456

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 80

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	33	lcl\|NC_015456.1_cdsid_YP_004414852.1	HHsearch (proba=100.00%)
Portal	28	lcl\|NC_015456.1_cdsid_YP_004414847.1	HHsearch (proba=100.00%)
TermL	27	lcl\|NC_015456.1_cdsid_YP_004414846.1	Blast (e-value=0)
MTP	39	lcl\|NC_015456.1_cdsid_YP_004414858.1	Blast (e-value=1e-126)
Sheath	NOT FOUND
Ad1	35	lcl\|NC_015456.1_cdsid_YP_004414854.1	HHsearch (proba=100.00%)
Hc1	36	lcl\|NC_015456.1_cdsid_YP_004414855.1	HHsearch (proba=100.00%)
Ne1	37	lcl\|NC_015456.1_cdsid_YP_004414856.1	HHsearch (proba=100.00%)
Tc1	38	lcl\|NC_015456.1_cdsid_YP_004414857.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:107687 protein:vir:79642 protein:vir:103285	T1 TLS JK06	97 % 74 % 51 %
Portal	protein:vir:107662 protein:vir:103219 protein:vir:79647	T1 JK06 TLS	96 % 64 % 62 %
TermL	protein:vir:107694 protein:vir:79648 protein:vir:104336	T1 TLS RTP	99 % 68 % 55 %
MTP	protein:vir:107670 protein:vir:79636 protein:vir:103277	T1 TLS JK06	94 % 68 % 53 %
Ad1	protein:vir:107702 protein:vir:79640 protein:vir:104344	T1 TLS RTP	96 % 51 % 43 %
Hc1	protein:vir:107669 protein:vir:79639 protein:vir:104346	T1 TLS RTP	98 % 44 % 40 %
Ne1	protein:vir:107703 protein:vir:79638 protein:vir:103280	T1 TLS JK06	96 % 58 % 39 %
Tc1	protein:vir:107704 protein:vir:79637 protein:vir:103278	T1 TLS JK06	99 % 61 % 45 %