Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster. ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 16 lcl|NC_015158.1_cdsid_YP_004251187.1 HHsearch (proba=100.00%)
Portal 19 lcl|NC_015158.1_cdsid_YP_004251190.1 HHsearch (proba=100.00%)
TermL 20 lcl|NC_015158.1_cdsid_YP_004251191.1 Blast (e-value=1e-178)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 11 lcl|NC_015158.1_cdsid_YP_004251182.1 HHsearch (proba=100.00%)
Hc3 9 lcl|NC_015158.1_cdsid_YP_004251180.1 HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:95451
protein:vir:3136
protein:vir:80180
PA11
VpV262
Pf-WMP3
55 %
25 %
18 %
Portal protein:vir:95449
protein:vir:3139
protein:vir:80165
PA11
VpV262
Pf-WMP3
56 %
30 %
17 %
TermL protein:vir:95431
protein:vir:2600
protein:vir:3140
PA11
SIO1
VpV262
58 %
46 %
44 %
Ad3 protein:vir:95463
protein:vir:2626
protein:vir:3130
PA11
SIO1
VpV262
40 %
29 %
24 %
Hc3 protein:vir:95475
protein:vir:2625
protein:vir:3133
PA11
SIO1
VpV262
31 %
27 %
23 %