Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Phaedrus | Genbank acc : NC_011057

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 4) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 98

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	13	lcl\|NC_011057.1_cdsid_YP_002014624.1	HHsearch (proba=99.85%)
Portal	10	lcl\|NC_011057.1_cdsid_YP_002014621.1	HHsearch (proba=100.00%)
TermL	5	lcl\|NC_011057.1_cdsid_YP_002014616.1	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	21	lcl\|NC_011057.1_cdsid_YP_002014632.1	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	24	lcl\|NC_011057.1_cdsid_YP_002014635.1	HHsearch (proba=100.00%)
Tc1	22	lcl\|NC_011057.1_cdsid_YP_002014633.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:2349 protein:vir:78506 protein:vir:78275	Bxb1 U2 Bethlehem	26 % 25 % 25 %
Portal	protein:vir:102426 protein:vir:99088 protein:vir:8654	Pipefish Qyrzula Rosebush	98 % 57 % 56 %
TermL	protein:vir:102402 protein:vir:99083 protein:vir:8649	Pipefish Qyrzula Rosebush	94 % 59 % 59 %
Ad1	protein:vir:102438 protein:vir:106038 protein:vir:99098	Pipefish Cooper Qyrzula	99 % 46 % 46 %
Ne1	protein:vir:102441 protein:vir:99101 protein:vir:8669	Pipefish Qyrzula Rosebush	98 % 56 % 56 %
Tc1	protein:vir:102439 protein:vir:8667 protein:vir:99099	Pipefish Rosebush Qyrzula	97 % 51 % 50 %