Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP NOT FOUND
Portal 7 lcl|NC_011044.1_cdsid_YP_002003846.1 HHsearch (proba=100.00%)
TermL 4 lcl|NC_011044.1_cdsid_YP_002003843.1 Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 18 lcl|NC_011044.1_cdsid_YP_002003857.1 HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 21 lcl|NC_011044.1_cdsid_YP_002003860.1 HHsearch (proba=100.00%)
Tc1 19 lcl|NC_011044.1_cdsid_YP_002003858.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
Portal protein:vir:106027
protein:vir:102426
protein:vir:99088
Cooper
Pipefish
Qyrzula
90 %
56 %
55 %
TermL protein:vir:106049
protein:vir:97894
protein:vir:107494
Cooper
Orion
PG1
96 %
67 %
67 %
Ad1 protein:vir:106038
protein:vir:97979
protein:vir:107532
Cooper
Orion
PG1
79 %
61 %
61 %
Ne1 protein:vir:106041
protein:vir:97982
protein:vir:107545
Cooper
Orion
PG1
86 %
71 %
71 %
Tc1 protein:vir:106039
protein:vir:97980
protein:vir:107514
Cooper
Orion
PG1
90 %
63 %
63 %