Query lcl|NC_011044.1_cdsid_YP_002003858.1 [gene=Nigel_19] [protein=gp19] [protein_id=YP_002003858.1] [location=17285..17815] Match_columns 176 No_of_seqs 9 out of 13 Neff 2.5 Searched_HMMs 1612 Date Thu Nov 7 13:58:51 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_19 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_19_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:106039 Length: 176 100.0 9E-109 5E-112 613.0 12.0 176 1-176 1-176 (176) 2 protein:vir:97980 Length: 172 100.0 6E-106 4E-109 597.3 12.2 172 1-176 1-172 (172) 3 protein:vir:107514 Length: 172 100.0 6E-106 4E-109 597.3 12.2 172 1-176 1-172 (172) 4 protein:vir:8667 Length: 186 # 100.0 8E-103 5E-106 580.4 13.4 174 1-176 1-186 (186) 5 protein:vir:99099 Length: 240 100.0 3E-101 2E-104 571.7 13.4 174 1-176 55-240 (240) 6 protein:vir:102439 Length: 173 100.0 1E-100 7E-104 568.5 12.8 168 1-176 1-173 (173) 7 protein:vir:106489 Length: 182 29.0 1.7 0.0011 19.3 6.7 152 1-176 1-169 (182) 8 protein:vir:103883 Length: 159 1.1 59 0.037 10.8 2.8 55 1-56 91-159 (159) 9 protein:vir:101652 Length: 188 1.0 63 0.039 10.7 3.0 60 115-176 1-95 (188) 10 protein:vir:7857 Length: 188 # 1.0 63 0.039 10.7 3.0 60 115-176 1-95 (188) No 1 >protein:vir:106039 Length: 176 # NCBI annotation: gp21 # Family: family:all:2802 # MgeID: mge:1505 # MgeName: Cooper # Cross-refs: genbank:acc:YP_654918;genbank:gi:109392374;genbank:GeneID:4157067 Probab=100.00 E-value=8.6e-109 Score=613.02 Aligned_cols=176 Identities=90% Similarity=1.531 Sum_probs=175.2 Q ss_pred CCCCcCCChHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcceeeeccCccchhhchhccCCcchhHHHHHhhhhhcccCC Q lcl|NC_011044. 1 MTQPCRTDPAMEVIGAVTTTLAEFFRKDQLCPPMVGGTANIRFFAGDGAPLAAWDSHVSQGCDEPFVWVRAQRRYRSRAF 80 (176) Q Consensus 1 mt~P~~~DpAs~vV~~~~~amk~aF~pd~~~PPlgGGs~~VRFFa~dgaplaawdah~~~gCdePflWVR~~~RYrs~~f 80 (176) ||.|+++|||+++|++++++||++|+||+.||||||||||||||||||+||+|||+|+++||+|||+|||++|||||++| T Consensus 1 m~~pcr~Dpa~~~V~~~t~aLk~~F~pD~~~PPlgGgT~nVrFF~~D~~pLaafdsh~~~gC~ePF~WVRl~~RYrs~~F 80 (176) T protein:vir:10 1 MTSPCRTDPAMEVVGAVTTTLTEFFRPDQQCPPMIGSTTNVRFFAGDGAPLAAWDSHVSQGCDEPFVWVRAQRRYRSKTF 80 (176) T ss_pred CCCcccccHHHHHHHHHHHHHHHHhccCCCCCCcccCccceeEeecCChhHHHHhhhhccCccchhHhhHhhhhhcccCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCccccCCccccceeeeeccceeeeeccCCCCHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcCcccccccceecccC Q lcl|NC_011044. 81 PNPTVEVGNCKLLKVMPVEVGVAWCAVVEQEPRWSDYAKEAAVSMDTAWRMEEALCAAAAQLLRDDSERLVGTDIINPYG 160 (176) Q Consensus 81 p~pt~~vg~c~~~rv~~iEvGVgRCa~~~~~p~w~~~~~EA~vSlDDSwRiE~aLC~Aa~~l~k~~~~~~v~~Dti~PyG 160 (176) |+||+++++|+++||++||||||||++++|+|+||+|+||||||||||||||+|||+|+++|++++.+|+|++|||+||| T Consensus 81 P~Pt~~~~~~~~~~va~iEvGvarCa~~~q~~~~~~~~~EA~VSlDds~Rie~AlC~aa~~l~~~~~~r~v~~D~i~PyG 160 (176) T protein:vir:10 81 PNPTVEVGNCKLLKVMPVEVGVAWCAVVDQEPRWSDYAKEAAVSMDTAWRMEEAMCAAARQLVADDSERLVGSDILNPYG 160 (176) T ss_pred CCccccCCCcchhhhhhhhhhhhhheeecCCCCHHHHHHHhhhccchhHHHHHHHHHHhhhhcCCchhhhhhhhcccccC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCceeeeeeeeeeeC Q lcl|NC_011044. 161 PEGGVIAWIGTLYASY 176 (176) Q Consensus 161 PEGGviaWtg~~yvqf 176 (176) ||||||||+|++|.+| T Consensus 161 PeGGVvaW~a~~y~~y 176 (176) T protein:vir:10 161 PEGGVIAWIGTLYASY 176 (176) T ss_pred CCCceeehhheehccC Confidence 9999999999999999 No 2 >protein:vir:97980 Length: 172 # NCBI annotation: gp23 # Family: family:all:2802 # MgeID: mge:1482 # MgeName: Orion # Cross-refs: genbank:acc:YP_655119;genbank:gi:109391869;genbank:GeneID:4157343 Probab=100.00 E-value=6.3e-106 Score=597.34 Aligned_cols=172 Identities=63% Similarity=1.233 Sum_probs=170.3 Q ss_pred CCCCcCCChHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcceeeeccCccchhhchhccCCcchhHHHHHhhhhhcccCC Q lcl|NC_011044. 1 MTQPCRTDPAMEVIGAVTTTLAEFFRKDQLCPPMVGGTANIRFFAGDGAPLAAWDSHVSQGCDEPFVWVRAQRRYRSRAF 80 (176) Q Consensus 1 mt~P~~~DpAs~vV~~~~~amk~aF~pd~~~PPlgGGs~~VRFFa~dgaplaawdah~~~gCdePflWVR~~~RYrs~~f 80 (176) |..|. |||+++|++++++||++|+ ||.||||||||||||||||||+||+|||+|+++||+|||+|||++|||||++| T Consensus 1 m~~~~--Dpa~~~V~~~t~aLk~~Fn-D~~~PPlgGgT~nVrFF~~D~~pLaafdsh~~~~C~ePF~WVRl~~RYrs~~F 77 (172) T protein:vir:97 1 MACRT--DPALVIVGHATEALLDWFK-DGACPPLVGSTTNVRFFAGDSTPLAAWDSHASQGCNEPFVWVRLMRRYRTQRF 77 (172) T ss_pred CCCcc--hHHHHHHHHHHHHHHHHHc-cCCCCCcccCccceeEeecCchhHHHHhhhhccCccchhHhHHhhhhhccCCC Confidence 88776 9999999999999999996 99999999999999999999999999999999999999999999999999999 Q ss_pred CCCccccCCccccceeeeeccceeeeeccCCCCHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcCcccccccceecccC Q lcl|NC_011044. 81 PNPTVEVGNCKLLKVMPVEVGVAWCAVVEQEPRWSDYAKEAAVSMDTAWRMEEALCAAAAQLLRDDSERLVGTDIINPYG 160 (176) Q Consensus 81 p~pt~~vg~c~~~rv~~iEvGVgRCa~~~~~p~w~~~~~EA~vSlDDSwRiE~aLC~Aa~~l~k~~~~~~v~~Dti~PyG 160 (176) |+||++ ++|+++||++||||||||++++|+|+||+|+||||||||||||||+|||+|++||+++++||+|++|||+||| T Consensus 78 P~Pt~~-~~c~~~~va~iEvGvarCa~~~q~~~~~~~~~EA~VSlDds~Rie~AlC~a~~~l~~~~~qr~v~~D~i~PyG 156 (172) T protein:vir:97 78 PDPTIG-IDCNLPRVAPVEIGVGWCALTEQEPRWSDYQREAEVSSDTAWRLEEALCQASTRLKRDDEQRLVGTDALVPYG 156 (172) T ss_pred CCCccC-cccchhhhhhhhhhhhheeeeccCCCHHHHHHHhhcccchhHHHHHHHHHHHHHhhcCccchhcccccccccC Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCceeeeeeeeeeeC Q lcl|NC_011044. 161 PEGGVIAWIGTLYASY 176 (176) Q Consensus 161 PEGGviaWtg~~yvqf 176 (176) ||||||||+|++|.+| T Consensus 157 PeGGVvaW~a~~y~~y 172 (172) T protein:vir:97 157 PEGGVIAWTAVLYSTY 172 (172) T ss_pred CCCceeehhheehhcC Confidence 9999999999999999 No 3 >protein:vir:107514 Length: 172 # NCBI annotation: gp23 # Family: family:all:2802 # MgeID: mge:1481 # MgeName: PG1 # Cross-refs: genbank:acc:NP_943801;genbank:gi:38638426;genbank:GeneID:2657194 Probab=100.00 E-value=6.3e-106 Score=597.34 Aligned_cols=172 Identities=63% Similarity=1.233 Sum_probs=170.3 Q ss_pred CCCCcCCChHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcceeeeccCccchhhchhccCCcchhHHHHHhhhhhcccCC Q lcl|NC_011044. 1 MTQPCRTDPAMEVIGAVTTTLAEFFRKDQLCPPMVGGTANIRFFAGDGAPLAAWDSHVSQGCDEPFVWVRAQRRYRSRAF 80 (176) Q Consensus 1 mt~P~~~DpAs~vV~~~~~amk~aF~pd~~~PPlgGGs~~VRFFa~dgaplaawdah~~~gCdePflWVR~~~RYrs~~f 80 (176) |..|. |||+++|++++++||++|+ ||.||||||||||||||||||+||+|||+|+++||+|||+|||++|||||++| T Consensus 1 m~~~~--Dpa~~~V~~~t~aLk~~Fn-D~~~PPlgGgT~nVrFF~~D~~pLaafdsh~~~~C~ePF~WVRl~~RYrs~~F 77 (172) T protein:vir:10 1 MACRT--DPALVIVGHATEALLDWFK-DGACPPLVGSTTNVRFFAGDSTPLAAWDSHASQGCNEPFVWVRLMRRYRTQRF 77 (172) T ss_pred CCCcc--hHHHHHHHHHHHHHHHHHc-cCCCCCcccCccceeEeecCchhHHHHhhhhccCccchhHhHHhhhhhccCCC Confidence 88776 9999999999999999996 99999999999999999999999999999999999999999999999999999 Q ss_pred CCCccccCCccccceeeeeccceeeeeccCCCCHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcCcccccccceecccC Q lcl|NC_011044. 81 PNPTVEVGNCKLLKVMPVEVGVAWCAVVEQEPRWSDYAKEAAVSMDTAWRMEEALCAAAAQLLRDDSERLVGTDIINPYG 160 (176) Q Consensus 81 p~pt~~vg~c~~~rv~~iEvGVgRCa~~~~~p~w~~~~~EA~vSlDDSwRiE~aLC~Aa~~l~k~~~~~~v~~Dti~PyG 160 (176) |+||++ ++|+++||++||||||||++++|+|+||+|+||||||||||||||+|||+|++||+++++||+|++|||+||| T Consensus 78 P~Pt~~-~~c~~~~va~iEvGvarCa~~~q~~~~~~~~~EA~VSlDds~Rie~AlC~a~~~l~~~~~qr~v~~D~i~PyG 156 (172) T protein:vir:10 78 PDPTIG-IDCNLPRVAPVEIGVGWCALTEQEPRWSDYQREAEVSSDTAWRLEEALCQASTRLKRDDEQRLVGTDALVPYG 156 (172) T ss_pred CCCccC-cccchhhhhhhhhhhhheeeeccCCCHHHHHHHhhcccchhHHHHHHHHHHHHHhhcCccchhcccccccccC Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCceeeeeeeeeeeC Q lcl|NC_011044. 161 PEGGVIAWIGTLYASY 176 (176) Q Consensus 161 PEGGviaWtg~~yvqf 176 (176) ||||||||+|++|.+| T Consensus 157 PeGGVvaW~a~~y~~y 172 (172) T protein:vir:10 157 PEGGVIAWTAVLYSTY 172 (172) T ss_pred CCCceeehhheehhcC Confidence 9999999999999999 No 4 >protein:vir:8667 Length: 186 # NCBI annotation: gp25 # Family: family:all:2802 # MgeID: mge:156 # MgeName: Rosebush # Cross-refs: genbank:acc:NP_817786;genbank:gi:29566218;genbank:GeneID:1259478 Probab=100.00 E-value=7.6e-103 Score=580.42 Aligned_cols=174 Identities=49% Similarity=0.940 Sum_probs=169.0 Q ss_pred CCCC---cCCChHHHHHHHHHHHHHHHhcCC-CCCCCCCCCCCcceeeeccCccchhhchhc---cCCcchhHHHHHhhh Q lcl|NC_011044. 1 MTQP---CRTDPAMEVIGAVTTTLAEFFRKD-QLCPPMVGGTANIRFFAGDGAPLAAWDSHV---SQGCDEPFVWVRAQR 73 (176) Q Consensus 1 mt~P---~~~DpAs~vV~~~~~amk~aF~pd-~~~PPlgGGs~~VRFFa~dgaplaawdah~---~~gCdePflWVR~~~ 73 (176) ||+| +++|||+++|++++++||++|+|| |.||||||||||||||||||+||+|||+|+ +|+|+|||+|||++| T Consensus 1 ~~~~~~~~p~Dpa~~~V~~~t~aLk~~F~pdd~~~PPlgGgT~nVrFFagD~~pLaafdsh~~~~~d~CaePF~WVRl~r 80 (186) T protein:vir:86 1 MTAPEAVVPEDPAISAVNAFVAALKLAFNPDDKVQPPLGGGTKNVRFFAGDGPALAAFDAHVGVSGDNCAEPFAWVRLAR 80 (186) T ss_pred CCCCccccccchHHHHHHHHHHHHHHHhccCCCCCCCcccCccceeEeecCchhHHHHhhhccCCCCCccchhHHHHhhh Confidence 9999 789999999999999999999998 999999999999999999999999999997 778999999999999 Q ss_pred hh--cccCCCCCccccCC--ccccceeeeeccceeeeeccC-CCCHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcCcc Q lcl|NC_011044. 74 RY--RSRAFPNPTVEVGN--CKLLKVMPVEVGVAWCAVVEQ-EPRWSDYAKEAAVSMDTAWRMEEALCAAAAQLLRDDSE 148 (176) Q Consensus 74 RY--rs~~fp~pt~~vg~--c~~~rv~~iEvGVgRCa~~~~-~p~w~~~~~EA~vSlDDSwRiE~aLC~Aa~~l~k~~~~ 148 (176) || ||++||+||+++++ |+++||++||||||||++++| +|+||+|+||||||||||||||+|||+|+++| .+++ T Consensus 81 RY~~rs~~FP~P~v~~~~~~c~~~~va~iEiGvarCa~~~q~~~~~~~~~~EA~VSlDds~Rie~ALC~aa~~l--~~~~ 158 (186) T protein:vir:86 81 RYYFRPGAFPAPVVDTSEKCADTMAAAAIEIGVARCTVTAQATPTFEQYAHEAEVSLDDSWRISLALCTAAKML--RTPK 158 (186) T ss_pred hhcccccCCCCcccccchhhhhhhhhhhhhhhhhhheecccCCCCHHHHHHHhhcccchhHHHHHHHHHHHHhh--cccc Confidence 99 99999999999998 899999999999999999999 59999999999999999999999999998877 4777 Q ss_pred cccccceecccCCCCceeeeeeeeeeeC Q lcl|NC_011044. 149 RLVGTDIINPYGPEGGVIAWIGTLYASY 176 (176) Q Consensus 149 ~~v~~Dti~PyGPEGGviaWtg~~yvqf 176 (176) |+|++|||+|||||||||||+|++|||. T Consensus 159 r~vg~D~i~PyGPeGGViaW~a~~yvql 186 (186) T protein:vir:86 159 RNVGLDTITPYGPEGGVIAWVGQAFVQL 186 (186) T ss_pred chhhhhcccccCCCCceEEeeEEEEeeC Confidence 9999999999999999999999999999 No 5 >protein:vir:99099 Length: 240 # NCBI annotation: gp23 # Family: family:all:2802 # MgeID: mge:1608 # MgeName: Qyrzula # Cross-refs: genbank:acc:YP_655703;genbank:gi:109521781;genbank:GeneID:4157821 Probab=100.00 E-value=3e-101 Score=571.69 Aligned_cols=174 Identities=48% Similarity=0.933 Sum_probs=167.7 Q ss_pred CCCC---cCCChHHHHHHHHHHHHHHHhcC-CCCCCCCCCCCCcceeeeccCccchhhchhc---cCCcchhHHHHHhhh Q lcl|NC_011044. 1 MTQP---CRTDPAMEVIGAVTTTLAEFFRK-DQLCPPMVGGTANIRFFAGDGAPLAAWDSHV---SQGCDEPFVWVRAQR 73 (176) Q Consensus 1 mt~P---~~~DpAs~vV~~~~~amk~aF~p-d~~~PPlgGGs~~VRFFa~dgaplaawdah~---~~gCdePflWVR~~~ 73 (176) .|+| +.+|||+++|++++++||++|+| ||.||||||||||||||||||+||+|||+|+ +|+|+|||+|||++| T Consensus 55 ~~~~~~~~p~DPa~~~V~~~t~aLk~~F~pnD~~~PPlgGgT~nVRFFagD~~PLAafDsH~g~d~d~CaEPFvWVRl~r 134 (240) T protein:vir:99 55 VTAPEAVVPEDPAISAVNAFVAALKLAFNPNDKVQPPLGGGTKNVRFFAGDGPALAAFDAHVGVSGDNCAEPFAWVRLAR 134 (240) T ss_pred ccCcccccccchHHHHHHHHHHHHHHHhccCCCCCCCcccCccceeEeecCChhHHHHhhhhccccccccchhhhhhhhh Confidence 7777 78899999999999999999999 5999999999999999999999999999999 888999999999999 Q ss_pred hh--cccCCCCCccccCC--ccccceeeeeccceeeeeccCC-CCHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcCcc Q lcl|NC_011044. 74 RY--RSRAFPNPTVEVGN--CKLLKVMPVEVGVAWCAVVEQE-PRWSDYAKEAAVSMDTAWRMEEALCAAAAQLLRDDSE 148 (176) Q Consensus 74 RY--rs~~fp~pt~~vg~--c~~~rv~~iEvGVgRCa~~~~~-p~w~~~~~EA~vSlDDSwRiE~aLC~Aa~~l~k~~~~ 148 (176) || ||++||+||+++++ |++++|++||||||||+..+++ |+||+|++|||||||||||||+|||+|+++| .+++ T Consensus 135 RY~~Rs~~FP~P~vd~~~~~c~~~~va~IEiGVarCa~~~qetp~w~~y~~EA~VSlDdswRiE~ALC~Aa~~L--~~~~ 212 (240) T protein:vir:99 135 RYYFRPGAFPAPVVDTSEKCADTMAAAAIEIGVARCTVAAQATPTFEQYAHEAEVSLDDSWRISLALCTAAKML--RTPK 212 (240) T ss_pred hhccccccCCCcccccchhhhhhhhhhhhhhhhhheeecccCCcCHHHHHHhhhhccchhHHHHHHHHHHHHhh--cccc Confidence 99 99999999999998 8999999999999999999965 9999999999999999999999999998877 4777 Q ss_pred cccccceecccCCCCceeeeeeeeeeeC Q lcl|NC_011044. 149 RLVGTDIINPYGPEGGVIAWIGTLYASY 176 (176) Q Consensus 149 ~~v~~Dti~PyGPEGGviaWtg~~yvqf 176 (176) |+|++|||+|||||||||||+|++|||. T Consensus 213 r~vg~D~i~PyGPEGGVVaW~a~~yVQl 240 (240) T protein:vir:99 213 RNVGLDTITPYGPEGGVVAWVGQAFVQL 240 (240) T ss_pred hhhhhhcccccCCCCceEEEEEEEEeeC Confidence 9999999999999999999999999999 No 6 >protein:vir:102439 Length: 173 # NCBI annotation: gp24 # Family: family:all:2802 # MgeID: mge:1618 # MgeName: Pipefish # Cross-refs: genbank:acc:YP_655301;genbank:gi:109521864;genbank:GeneID:4157754 Probab=100.00 E-value=1.1e-100 Score=568.54 Aligned_cols=168 Identities=42% Similarity=0.833 Sum_probs=164.0 Q ss_pred CCCCcCCChHHHHHHHHHHHHHHHhcCC-CCCCCCCCCCCcceeeeccCccchhhchhccCC----cchhHHHHHhhhhh Q lcl|NC_011044. 1 MTQPCRTDPAMEVIGAVTTTLAEFFRKD-QLCPPMVGGTANIRFFAGDGAPLAAWDSHVSQG----CDEPFVWVRAQRRY 75 (176) Q Consensus 1 mt~P~~~DpAs~vV~~~~~amk~aF~pd-~~~PPlgGGs~~VRFFa~dgaplaawdah~~~g----CdePflWVR~~~RY 75 (176) |..|. |||.++|++++++||++|+|| |.||||||||||||||||||+||+|||+|+++| |+|||+|||++||| T Consensus 1 m~~p~--d~Av~~v~~~t~aLk~~F~p~d~~~PPlgGgT~nVrFF~~D~~pLaafdsh~~~G~~d~caePF~WVRl~~RY 78 (173) T protein:vir:10 1 MSGPV--DAAVGVIAKATMALKVAFNPDDKIQPPIGGGSKTVRFFHSDQAPLYAFDTMAADGDTDECAEPFLWVRLGGRY 78 (173) T ss_pred CCCcc--hhHHHHHHHHHHHHHHHhccCCCCCCCcccCccceeEeecCChhHHHHhhhhccCCCccccchhhhhhhhhhh Confidence 99887 999999999999999999998 999999999999999999999999999999988 99999999999999 Q ss_pred cccCCCCCccccCCccccceeeeeccceeeeeccCCCCHHHHHHHHhhcccchhHHHHHHHHHHHHHhhcCcccccccce Q lcl|NC_011044. 76 RSRAFPNPTVEVGNCKLLKVMPVEVGVAWCAVVEQEPRWSDYAKEAAVSMDTAWRMEEALCAAAAQLLRDDSERLVGTDI 155 (176) Q Consensus 76 rs~~fp~pt~~vg~c~~~rv~~iEvGVgRCa~~~~~p~w~~~~~EA~vSlDDSwRiE~aLC~Aa~~l~k~~~~~~v~~Dt 155 (176) ||++||+||++ ++|+++||++||||||||++++|+|+||+|+||||||||||||||+|||+|+++|. .+|++|| T Consensus 79 rs~~FP~Pt~e-~~c~~~~va~iEiGvarCa~~~q~~~~~~~~~EA~VSlDds~Rie~AlC~a~~~l~-----~~v~~D~ 152 (173) T protein:vir:10 79 RTKRFPDPTQE-PDCEAPRVLMIEMGIARCAALGETLNWDEVEREAWVSLDDSYRLELALCRFKNTVV-----GPVSFDT 152 (173) T ss_pred ccCCCCCCccc-ccccchhhhhhhhhhhhheeecCCCCHHHHHHHhhcccchhHHHHHHHHHHhhhhc-----ccccccc Confidence 99999999999 99999999999999999999999999999999999999999999999999999996 2399999 Q ss_pred ecccCCCCceeeeeeeeeeeC Q lcl|NC_011044. 156 INPYGPEGGVIAWIGTLYASY 176 (176) Q Consensus 156 i~PyGPEGGviaWtg~~yvqf 176 (176) |+|||||||||||+|++|||. T Consensus 153 i~PyGPeGGVvaW~a~~yvql 173 (173) T protein:vir:10 153 IAPYGPEGGVVAWTARVNVQI 173 (173) T ss_pred ccccCCCCceEEeEEEEEeeC Confidence 999999999999999999999 No 7 >protein:vir:106489 Length: 182 # NCBI annotation: Pas20 # Family: family:all:2802 # MgeID: mge:1680 # MgeName: phiAsp2 # Cross-refs: genbank:acc:YP_024806;genbank:gi:48697421;genbank:GeneID:2846146 Probab=29.01 E-value=1.7 Score=19.32 Aligned_cols=152 Identities=26% Similarity=0.404 Sum_probs=83.1 Q ss_pred CCC-CcCCCh-HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcceeeeccCccchhhchhc----cCCcchhHHHHHhhhh Q lcl|NC_011044. 1 MTQ-PCRTDP-AMEVIGAVTTTLAEFFRKDQLCPPMVGGTANIRFFAGDGAPLAAWDSHV----SQGCDEPFVWVRAQRR 74 (176) Q Consensus 1 mt~-P~~~Dp-As~vV~~~~~amk~aF~pd~~~PPlgGGs~~VRFFa~dgaplaawdah~----~~gCdePflWVR~~~R 74 (176) |.+ |. +=| |.+.+.-.-+-+++.= -||--=|-.. | .--+|+ -+.|-.-+.|||-.-= T Consensus 1 mvadpm-vmplarellecldqeiskvd-----nppayvglrp-------g----nvvahlmstsedeccsglawvrpatf 63 (182) T protein:vir:10 1 MVADPM-VMPLARELLECLDQEISKVD-----NPPAYVGLRP-------G----NVVAHLMSTSEDECCSGLAWVRPATF 63 (182) T ss_pred CCcCch-hhhhHHHHHHHHHHHhhhcc-----CCcceeeecc-------h----hhhhhhhcccchhhhccccccccccc Confidence 322 11 111 2233322222222222 2442222111 1 112454 4458889999997653 Q ss_pred h-cccCCCCCcc--ccCCccccceeeeeccceeeeeccC---CC---CHHHHHHHHhhcccchhHHHHHHHHHHHHHhhc Q lcl|NC_011044. 75 Y-RSRAFPNPTV--EVGNCKLLKVMPVEVGVAWCAVVEQ---EP---RWSDYAKEAAVSMDTAWRMEEALCAAAAQLLRD 145 (176) Q Consensus 75 Y-rs~~fp~pt~--~vg~c~~~rv~~iEvGVgRCa~~~~---~p---~w~~~~~EA~vSlDDSwRiE~aLC~Aa~~l~k~ 145 (176) - .|.-||.-.. --|.-----+|-+|.|--||+-+.. -| .||.+-+ --+||.--+..|||- ...+ T Consensus 64 vpssgvfpvqdpapikgggvrawaitlelgavrcaptpdaeriptteewdavtq---avmddaaamrralcc----fiea 136 (182) T protein:vir:10 64 VPSSGVFPVQDPAPIKGGGVRAWAITLELGAVRCAPTPDAERIPTTEEWDAVTQ---AVMDDAAAMRRALCC----FIEA 136 (182) T ss_pred ccCCCcccccCCCccccCceeeEEEEEeecceeecCCCccccCCCchhhHHHHH---HHhhhhhhhhhhhee----eeec Confidence 3 3445553211 1122222235778999999986643 22 6877654 358999999999997 3444 Q ss_pred Cccc--ccccceecccCCCCceeeeeeeeeeeC Q lcl|NC_011044. 146 DSER--LVGTDIINPYGPEGGVIAWIGTLYASY 176 (176) Q Consensus 146 ~~~~--~v~~Dti~PyGPEGGviaWtg~~yvqf 176 (176) ++.| .|-.-.-.|+--|||-++=+--|-.|= T Consensus 137 dprrsgrvlagawlpldveggcvggimnitiqg 169 (182) T protein:vir:10 137 DPRRSGRVLAGAWLPLDVEGGCVGGIMNITIQG 169 (182) T ss_pred CcccccceeeeeeeeeeccCceeeeeeeeEeec Confidence 5433 244467789999999988666666665 No 8 >protein:vir:103883 Length: 159 # NCBI annotation: hypothetical protein # Family: family:all:2406 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938246;genbank:gi:38229151;genbank:GeneID:2648198 Probab=1.09 E-value=59 Score=10.82 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=37.5 Q ss_pred CCCCcCCChHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcceeeeccCcc--------------chhhch Q lcl|NC_011044. 1 MTQPCRTDPAMEVIGAVTTTLAEFFRKDQLCPPMVGGTANIRFFAGDGAP--------------LAAWDS 56 (176) Q Consensus 1 mt~P~~~DpAs~vV~~~~~amk~aF~pd~~~PPlgGGs~~VRFFa~dgap--------------laawda 56 (176) =-++.-.|.|-+.+.+++++|.= |.||+..-||-=+...+|+-..+|=. |..|.+ T Consensus 91 ~~~~a~~d~aG~ll~~v~~AL~G-W~P~~~~~Pl~r~~~~~~~~y~~gfayyPl~F~~~~~~~~~~~~~~ 159 (159) T protein:vir:10 91 GDGQGARREAGPLLGRLLKALTG-WVPDQGVTPLARSPQASPVSYSNGFFYFPLVFTANFVFPRLKSWKP 159 (159) T ss_pred CccchhhHHHHHHHHHHHHHhcC-cccCCcCCCeeecccCCCccccCCEEEeeeeEEeeeeccccccCCC Confidence 11344446788888888888865 88998888888888788876666642 234444 No 9 >protein:vir:101652 Length: 188 # NCBI annotation: gp15 # Family: family:all:11114 # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654770;genbank:gi:109302768;genbank:GeneID:4156086 Probab=1.02 E-value=63 Score=10.67 Aligned_cols=60 Identities=18% Similarity=0.105 Sum_probs=29.8 Q ss_pred HHHHHHHhhccc-chhHHHHHHHHHHHHHhhcCccccc---ccceecccCCCCceeeeee-------------------- Q lcl|NC_011044. 115 SDYAKEAAVSMD-TAWRMEEALCAAAAQLLRDDSERLV---GTDIINPYGPEGGVIAWIG-------------------- 170 (176) Q Consensus 115 ~~~~~EA~vSlD-DSwRiE~aLC~Aa~~l~k~~~~~~v---~~Dti~PyGPEGGviaWtg-------------------- 170 (176) -++++|-.=++| |.=+.++||-.|+.+. |+--.+.+ ..|| .=.++.||-..--| T Consensus 1 ~~~~~~la~~~~~da~~v~lAL~~As~~V-R~~~g~~i~~V~~dt-~~id~~Gg~~~LP~~Pvv~i~~Ve~~~~~G~~~~ 78 (188) T protein:vir:10 1 MTFAQQLADAFPEDADDAATALSWAKSQV-EGYCGRKFDLVEDDV-AIVDPYCGSSLLPSIPVVEISKVEGYLPTGNGMD 78 (188) T ss_pred CchhhhHHHhcCCCcchHHHHHHHHHHHH-HHHhCCcceeeeeee-eeeecCCCceeeccCcceeeeEEEEEeeCCcccc Confidence 455666555555 7778999999888754 44333333 3466 22333333322222 Q ss_pred -----------eeeeeC Q lcl|NC_011044. 171 -----------TLYASY 176 (176) Q Consensus 171 -----------~~yvqf 176 (176) ..+..| T Consensus 79 ~v~~r~y~~~g~~~~l~ 95 (188) T protein:vir:10 79 WVELTNYWFKRDTGLIF 95 (188) T ss_pred cccccccccccceeeec Confidence 111111 No 10 >protein:vir:7857 Length: 188 # NCBI annotation: gp14 # Family: family:all:11114 # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817464;genbank:gi:29565893;genbank:GeneID:1259086 Probab=1.02 E-value=63 Score=10.67 Aligned_cols=60 Identities=18% Similarity=0.105 Sum_probs=29.8 Q ss_pred HHHHHHHhhccc-chhHHHHHHHHHHHHHhhcCccccc---ccceecccCCCCceeeeee-------------------- Q lcl|NC_011044. 115 SDYAKEAAVSMD-TAWRMEEALCAAAAQLLRDDSERLV---GTDIINPYGPEGGVIAWIG-------------------- 170 (176) Q Consensus 115 ~~~~~EA~vSlD-DSwRiE~aLC~Aa~~l~k~~~~~~v---~~Dti~PyGPEGGviaWtg-------------------- 170 (176) -++++|-.=++| |.=+.++||-.|+.+. |+--.+.+ ..|| .=.++.||-..--| T Consensus 1 ~~~~~~la~~~~~da~~v~lAL~~As~~V-R~~~g~~i~~V~~dt-~~id~~Gg~~~LP~~Pvv~i~~Ve~~~~~G~~~~ 78 (188) T protein:vir:78 1 MTFAQQLADAFPEDADDAATALSWAKSQV-EGYCGRKFDLVEDDV-AIVDPYCGSSLLPSIPVVEISKVEGYLPTGNGMD 78 (188) T ss_pred CchhhhHHHhcCCCcchHHHHHHHHHHHH-HHHhCCcceeeeeee-eeeecCCCceeeccCcceeeeEEEEEeeCCcccc Confidence 455666555555 7778999999888754 44333333 3466 22333333322222 Q ss_pred -----------eeeeeC Q lcl|NC_011044. 171 -----------TLYASY 176 (176) Q Consensus 171 -----------~~yvqf 176 (176) ..+..| T Consensus 79 ~v~~r~y~~~g~~~~l~ 95 (188) T protein:vir:78 79 WVELTNYWFKRDTGLIF 95 (188) T ss_pred cccccccccccceeeec Confidence 111111 Done!