Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : YuA | Genbank acc : NC_010116

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 5) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 77

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	56	lcl\|NC_010116.1_cdsid_YP_001595879.1	HHsearch (proba=100.00%)
Portal	52	lcl\|NC_010116.1_cdsid_YP_001595875.1	HHsearch (proba=100.00%)
TermL	51	lcl\|NC_010116.1_cdsid_YP_001595874.1	Blast (e-value=0)
MTP	66	lcl\|NC_010116.1_cdsid_YP_001595889.1	Blast (e-value=0)
Sheath	NOT FOUND
Ad1	63	lcl\|NC_010116.1_cdsid_YP_001595886.1	HHsearch (proba=100.00%)
Hc1	64	lcl\|NC_010116.1_cdsid_YP_001595887.1	HHsearch (proba=100.00%)
Ne1	68	lcl\|NC_010116.1_cdsid_YP_001595891.1	HHsearch (proba=100.00%)
Tc1	65	lcl\|NC_010116.1_cdsid_YP_001595888.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Hc1	4	2
Ne1<->Ad1	5	3
Ne1<->Tc1	3	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:97255 protein:vir:94933 protein:vir:105038	M6 Xp15 phiKO2	95 % 61 % 17 %
Portal	protein:vir:97265 protein:vir:80453 protein:vir:95149	M6 BcepGomr PA73	97 % 24 % 24 %
TermL	protein:vir:97250 protein:vir:80432 protein:vir:95130	M6 BcepGomr PA73	100 % 43 % 40 %
MTP	protein:vir:97240 protein:vir:95133 protein:vir:80398	M6 PA73 BcepGomr	97 % 58 % 52 %
Ad1	protein:vir:97267 protein:vir:95176 protein:vir:80389	M6 PA73 BcepGomr	94 % 29 % 27 %
Hc1	protein:vir:97237 protein:vir:95145 protein:vir:80382	M6 PA73 BcepGomr	97 % 32 % 28 %
Ne1	protein:vir:97190 protein:vir:95157 protein:vir:80425	M6 PA73 BcepGomr	100 % 41 % 35 %
Tc1	protein:vir:97211 protein:vir:80429 protein:vir:95155	M6 BcepGomr PA73	97 % 45 % 39 %