Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 56 lcl|NC_010116.1_cdsid_YP_001595879.1 HHsearch (proba=100.00%)
Portal 52 lcl|NC_010116.1_cdsid_YP_001595875.1 HHsearch (proba=100.00%)
TermL 51 lcl|NC_010116.1_cdsid_YP_001595874.1 Blast (e-value=0)
MTP 66 lcl|NC_010116.1_cdsid_YP_001595889.1 Blast (e-value=0)
Sheath NOT FOUND
Ad1 63 lcl|NC_010116.1_cdsid_YP_001595886.1 HHsearch (proba=100.00%)
Hc1 64 lcl|NC_010116.1_cdsid_YP_001595887.1 HHsearch (proba=100.00%)
Ne1 68 lcl|NC_010116.1_cdsid_YP_001595891.1 HHsearch (proba=100.00%)
Tc1 65 lcl|NC_010116.1_cdsid_YP_001595888.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ne1<->Hc1 4 2
Ne1<->Ad1 5 3
Ne1<->Tc1 3 2


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:97255
protein:vir:94933
protein:vir:105038
M6
Xp15
phiKO2
95 %
61 %
17 %
Portal protein:vir:97265
protein:vir:80453
protein:vir:95149
M6
BcepGomr
PA73
97 %
24 %
24 %
TermL protein:vir:97250
protein:vir:80432
protein:vir:95130
M6
BcepGomr
PA73
100 %
43 %
40 %
MTP protein:vir:97240
protein:vir:95133
protein:vir:80398
M6
PA73
BcepGomr
97 %
58 %
52 %
Ad1 protein:vir:97267
protein:vir:95176
protein:vir:80389
M6
PA73
BcepGomr
94 %
29 %
27 %
Hc1 protein:vir:97237
protein:vir:95145
protein:vir:80382
M6
PA73
BcepGomr
97 %
32 %
28 %
Ne1 protein:vir:97190
protein:vir:95157
protein:vir:80425
M6
PA73
BcepGomr
100 %
41 %
35 %
Tc1 protein:vir:97211
protein:vir:80429
protein:vir:95155
M6
BcepGomr
PA73
97 %
45 %
39 %