BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:80218|NCBI_annot:putative DNA maturase B|genbank:acc:YP_001522892;genbank:gi:158345185;genbank:GeneID:5687481 (595 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|12767|lcl|protein:vir:80218 Length: 595 # NCBI annotation: pu... 1229 0.0 gi|18767|lcl|protein:vir:6335 Length: 601 # NCBI annotation: put... 712 0.0 gi|11728|lcl|protein:vir:78939 Length: 601 # NCBI annotation: pu... 707 0.0 gi|8927|lcl|protein:vir:97005 Length: 632 # NCBI annotation: 40 ... 382 e-108 gi|15201|lcl|protein:vir:7028 Length: 631 # NCBI annotation: lar... 379 e-107 gi|7495|lcl|protein:vir:103312 Length: 624 # NCBI annotation: Te... 365 e-103 gi|3994|lcl|protein:vir:99686 Length: 586 # NCBI annotation: DNA... 283 6e-78 gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA... 275 1e-75 gi|14546|lcl|protein:vir:8897 Length: 582 # NCBI annotation: DNA... 273 3e-75 gi|16205|lcl|protein:vir:1554 Length: 587 # NCBI annotation: DNA... 273 3e-75 gi|13826|lcl|protein:vir:3376 Length: 586 # NCBI annotation: DNA... 273 5e-75 gi|3734|lcl|protein:vir:94555 Length: 585 # NCBI annotation: DNA... 272 8e-75 gi|16146|lcl|protein:vir:10462 Length: 586 # NCBI annotation: DN... 272 8e-75 gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: mat... 270 3e-74 gi|10294|lcl|protein:vir:105656 Length: 405 # NCBI annotation: p... 259 7e-71 gi|11501|lcl|protein:vir:78718 Length: 574 # NCBI annotation: DN... 251 2e-68 gi|7204|lcl|protein:vir:100065 Length: 577 # NCBI annotation: DN... 249 7e-68 gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hyp... 47 8e-07 gi|9169|lcl|protein:vir:99234 Length: 550 # NCBI annotation: hyp... 38 3e-04 gi|3935|lcl|protein:vir:103868 Length: 551 # NCBI annotation: hy... 38 4e-04 gi|12711|lcl|protein:vir:80169 Length: 565 # NCBI annotation: te... 38 4e-04 gi|15319|lcl|protein:vir:3140 Length: 535 # NCBI annotation: hyp... 34 0.005 gi|7770|lcl|protein:vir:96410 Length: 536 # NCBI annotation: hyp... 29 0.15 gi|8062|lcl|protein:vir:103374 Length: 536 # NCBI annotation: pu... 29 0.15 gi|4089|lcl|protein:vir:94598 Length: 581 # NCBI annotation: PfW... 28 0.33 gi|291|lcl|protein:vir:3608 Length: 462 # NCBI annotation: TerL ... 26 1.1 gi|11995|lcl|protein:vir:79222 Length: 591 # NCBI annotation: hy... 26 1.5 gi|13633|lcl|protein:vir:3963 Length: 462 # NCBI annotation: put... 25 1.7 gi|12256|lcl|protein:vir:79447 Length: 485 # NCBI annotation: ph... 25 2.2 gi|10766|lcl|protein:vir:78016 Length: 485 # NCBI annotation: te... 25 2.2 >gi|12767|lcl|protein:vir:80218 Length: 595 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:1879 # MgeName: LKA1 # Cross-refs: genbank:acc:YP_001522892;genbank:gi:158345185;genbank:Ge neID:5687481 Length = 595 Score = 1229 bits (3180), Expect = 0.0, Method: Compositional matrix adjust. Identities = 595/595 (100%), Positives = 595/595 (100%) Query: 1 MDVRERFERAQLVREMYPEFVDFCRDAMEYLGYSMTWMQEDIAEFMQYGPQRSMVAAQRG 60 MDVRERFERAQLVREMYPEFVDFCRDAMEYLGYSMTWMQEDIAEFMQYGPQRSMVAAQRG Sbjct: 1 MDVRERFERAQLVREMYPEFVDFCRDAMEYLGYSMTWMQEDIAEFMQYGPQRSMVAAQRG 60 Query: 61 EAKSTIACLFGLWNLVQDPTHRVVLVSGAQDKAEENGKLMHGLIHNWPLLQYLAPDKYAG 120 EAKSTIACLFGLWNLVQDPTHRVVLVSGAQDKAEENGKLMHGLIHNWPLLQYLAPDKYAG Sbjct: 61 EAKSTIACLFGLWNLVQDPTHRVVLVSGAQDKAEENGKLMHGLIHNWPLLQYLAPDKYAG 120 Query: 121 DRTSVLEFDVHWSLKGVDKSASVNCLGITSSLQGYRGDLLIPDDIETTKNGLTATERAKL 180 DRTSVLEFDVHWSLKGVDKSASVNCLGITSSLQGYRGDLLIPDDIETTKNGLTATERAKL Sbjct: 121 DRTSVLEFDVHWSLKGVDKSASVNCLGITSSLQGYRGDLLIPDDIETTKNGLTATERAKL 180 Query: 181 ITLSKEFTSIVADRNGRILYLGTPQTRESIYNTLPGRGFTVRVWPGRFPKASELPKYGDA 240 ITLSKEFTSIVADRNGRILYLGTPQTRESIYNTLPGRGFTVRVWPGRFPKASELPKYGDA Sbjct: 181 ITLSKEFTSIVADRNGRILYLGTPQTRESIYNTLPGRGFTVRVWPGRFPKASELPKYGDA 240 Query: 241 LAPSILERMALLGDRCQTGRGLDGTRGWSTDPERYSEEELCDKELDQGPETFELQFMLNT 300 LAPSILERMALLGDRCQTGRGLDGTRGWSTDPERYSEEELCDKELDQGPETFELQFMLNT Sbjct: 241 LAPSILERMALLGDRCQTGRGLDGTRGWSTDPERYSEEELCDKELDQGPETFELQFMLNT 300 Query: 301 SLSDAARQQLKLRDLIVADFSHEQVPESVFWAADPRFKIDLPQEFPVQSVEMFRPASVHE 360 SLSDAARQQLKLRDLIVADFSHEQVPESVFWAADPRFKIDLPQEFPVQSVEMFRPASVHE Sbjct: 301 SLSDAARQQLKLRDLIVADFSHEQVPESVFWAADPRFKIDLPQEFPVQSVEMFRPASVHE 360 Query: 361 HFAQIKSMTLFLDPAGNGGDELAFAIGGAVGPYIHVVAWGGFKGGVSEDNLDKLVQLCKD 420 HFAQIKSMTLFLDPAGNGGDELAFAIGGAVGPYIHVVAWGGFKGGVSEDNLDKLVQLCKD Sbjct: 361 HFAQIKSMTLFLDPAGNGGDELAFAIGGAVGPYIHVVAWGGFKGGVSEDNLDKLVQLCKD 420 Query: 421 FGVKVVLVEKNMGAGTVTQLVRNHFLGIGPDGKQRLAGVGVDERHKTGQKELRIINTIRP 480 FGVKVVLVEKNMGAGTVTQLVRNHFLGIGPDGKQRLAGVGVDERHKTGQKELRIINTIRP Sbjct: 421 FGVKVVLVEKNMGAGTVTQLVRNHFLGIGPDGKQRLAGVGVDERHKTGQKELRIINTIRP 480 Query: 481 VMQKHRLVLHRSAVEMDLELLKQYPLQHRDVRSGLYQMHNITSDRGSLTKDDRLDALEGL 540 VMQKHRLVLHRSAVEMDLELLKQYPLQHRDVRSGLYQMHNITSDRGSLTKDDRLDALEGL Sbjct: 481 VMQKHRLVLHRSAVEMDLELLKQYPLQHRDVRSGLYQMHNITSDRGSLTKDDRLDALEGL 540 Query: 541 VAELMGFLVIDEVKEQQRRDAAVVQEFLRNPMGTGPGVGRPLKSGHRVMRKRFGR 595 VAELMGFLVIDEVKEQQRRDAAVVQEFLRNPMGTGPGVGRPLKSGHRVMRKRFGR Sbjct: 541 VAELMGFLVIDEVKEQQRRDAAVVQEFLRNPMGTGPGVGRPLKSGHRVMRKRFGR 595 >gi|18767|lcl|protein:vir:6335 Length: 601 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:132 # MgeName: phiKMV # Cross-refs: genbank:acc:NP_877482;genbank:gi:33300854;uniprot:Q7Y2C2 ;genbank:GeneID:1482617 Length = 601 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/590 (59%), Positives = 445/590 (75%), Gaps = 7/590 (1%) Query: 1 MDVRERFERAQLVREMYPEFVDFCRDAMEYLGYSMTWMQEDIAEFMQYGPQRSMVAAQRG 60 M +ERF+ A VR+MYP F DFC DAM +LG+ MTWMQ DIA+FMQ P ++MVAAQRG Sbjct: 1 MTPQERFQIAHEVRDMYPRFRDFCLDAMLFLGFKMTWMQLDIADFMQDSPNKAMVAAQRG 60 Query: 61 EAKSTIACLFGLWNLVQDPTHRVVLVSGAQDKAEENGKLMHGLIHNWPLLQYLAPDKYAG 120 EAKSTIAC++ +W + Q+P R +LVSG+ DKAEENG+L+ LI +W LL YL P+ G Sbjct: 61 EAKSTIACIYVVWCITQNPATRAMLVSGSGDKAEENGQLITKLIMHWDLLAYLRPEARMG 120 Query: 121 DRTSVLEFDVHWSLKGVDKSASVNCLGITSSLQGYRGDLLIPDDIETTKNGLTATERAKL 180 DRTS FDV+W+LKGV+KSAS+NC+GIT++LQGYR D+LIPDDIETTKNGLTATERAKL Sbjct: 121 DRTSATSFDVNWALKGVEKSASINCIGITAALQGYRADILIPDDIETTKNGLTATERAKL 180 Query: 181 ITLSKEFTSIVADRNGRILYLGTPQTRESIYNTLPGRGFTVRVWPGRFPKASELPKYGDA 240 S+EFTSI +G+ILYLGTPQ+RESIYN LP RGF +R+WPGRFP E +YGD Sbjct: 181 TRQSQEFTSICT--HGKILYLGTPQSRESIYNGLPARGFLMRIWPGRFPTLDEQARYGDW 238 Query: 241 LAPSILERMALL---GDRCQTGRGLDGTRGWSTDPERYSEEELCDKELDQGPETFELQFM 297 LAPSIL R+A L G +TG+GLDGTRGW+ DP+RY+EE+L DKELDQGPE F+LQ+M Sbjct: 239 LAPSILARIARLEEKGHNPRTGKGLDGTRGWAADPQRYNEEDLLDKELDQGPEGFQLQYM 298 Query: 298 LNTSLSDAARQQLKLRDLIVADFSHEQVPESVFWAADPRFKIDL-PQEFPVQSVEMFRPA 356 L+TSL+D R QLKLRDL+ D +HE VPE V WAAD RFK+ FPV E++ PA Sbjct: 299 LDTSLADEQRMQLKLRDLLFIDATHESVPEQVAWAADERFKLKFDAHRFPVIKPELYLPA 358 Query: 357 SVHEHFAQIKSMTLFLDPAGNGGDELAFAIGGAVGPYIHVVAWGGFKGGVSEDNLDKLVQ 416 + +A ++ MT+F+DPAG+GGDEL++A+GG +GPYIHVV+ GG+KGG +E+NL+K + Sbjct: 359 LMAGGWAPLQQMTMFVDPAGDGGDELSYALGGTLGPYIHVVSIGGWKGGFAEENLEKCIA 418 Query: 417 LCKDFGVKVVLVEKNMGAGTVTQLVRNHFLGIGPD-GKQRLAGVGVDERHKTGQKELRII 475 L +GVKV+ VEKN+GAG V QL RNH I PD GK R G+GV++R K+GQKE RII Sbjct: 419 LAARYGVKVIYVEKNLGAGAVGQLFRNHMRSIDPDTGKLRYEGIGVEDRQKSGQKERRII 478 Query: 476 NTIRPVMQKHRLVLHRSAVEMDLELLKQYPLQHRDVRSGLYQMHNITSDRGSLTKDDRLD 535 +T+RP+MQ+HRL+ H SA++ D +QYP R+ RS +Q+HNIT+DRGSL KDDR+D Sbjct: 479 DTLRPIMQRHRLIFHVSAMDSDHVSCQQYPADKRNERSVFHQIHNITTDRGSLPKDDRID 538 Query: 536 ALEGLVAELMGFLVIDEVKEQQRRDAAVVQEFLRNPMGTGPGVGRPLKSG 585 ALEGLV EL LV D+ + R+ A +E+L NPMG V R L G Sbjct: 539 ALEGLVRELAPTLVKDDEAATRAREEAAKKEWLNNPMGYTKSVLRSLGMG 588 >gi|11728|lcl|protein:vir:78939 Length: 601 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:1860 # MgeName: LKD16 # Cross-refs: genbank:acc:YP_001522835;genbank:gi:158345070;genbank:Ge neID:5687429 Length = 601 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/590 (59%), Positives = 445/590 (75%), Gaps = 7/590 (1%) Query: 1 MDVRERFERAQLVREMYPEFVDFCRDAMEYLGYSMTWMQEDIAEFMQYGPQRSMVAAQRG 60 M +ERF+ A V +MYP F DFC DAM +LG+ MTWMQ DIA+FMQ P ++MVAAQRG Sbjct: 1 MTPQERFQIAHEVMDMYPRFRDFCLDAMLFLGFKMTWMQLDIADFMQDSPNKAMVAAQRG 60 Query: 61 EAKSTIACLFGLWNLVQDPTHRVVLVSGAQDKAEENGKLMHGLIHNWPLLQYLAPDKYAG 120 EAKSTIAC++ +W +V+DP R +LVSG+ DKAEENG+L+ LI +W LL YL P+ G Sbjct: 61 EAKSTIACIYVVWCIVRDPRTRAMLVSGSGDKAEENGQLITKLIMHWDLLAYLRPEARMG 120 Query: 121 DRTSVLEFDVHWSLKGVDKSASVNCLGITSSLQGYRGDLLIPDDIETTKNGLTATERAKL 180 DRTS FDV+W+LKGV+KSAS+NC+GIT++LQGYR D+LIPDDIETTKNGLTATERAKL Sbjct: 121 DRTSATSFDVNWALKGVEKSASINCIGITAALQGYRADILIPDDIETTKNGLTATERAKL 180 Query: 181 ITLSKEFTSIVADRNGRILYLGTPQTRESIYNTLPGRGFTVRVWPGRFPKASELPKYGDA 240 S+EFTSI +G+ILYLGTPQ+RESIYN LP RGF +R+WPGRFP E +YGD Sbjct: 181 TRQSQEFTSICT--HGKILYLGTPQSRESIYNGLPARGFLMRIWPGRFPTLDEQERYGDW 238 Query: 241 LAPSILERMALLGDRC---QTGRGLDGTRGWSTDPERYSEEELCDKELDQGPETFELQFM 297 LAPSILER+A L +R +TG+GLDGTRGW+ DP+RY+EE+L DKELDQG E F+LQ+M Sbjct: 239 LAPSILERIARLEERGHNPRTGKGLDGTRGWAADPQRYNEEDLIDKELDQGAEGFQLQYM 298 Query: 298 LNTSLSDAARQQLKLRDLIVADFSHEQVPESVFWAADPRFKIDL-PQEFPVQSVEMFRPA 356 L+TSL+D R QLKLRDL+ D +HE VPE V WAAD RFK+ FP+ E++ PA Sbjct: 299 LDTSLADEQRMQLKLRDLLFIDATHESVPEQVAWAADERFKLKFDAHRFPIIKPELYLPA 358 Query: 357 SVHEHFAQIKSMTLFLDPAGNGGDELAFAIGGAVGPYIHVVAWGGFKGGVSEDNLDKLVQ 416 + +A ++ MT+F+DPAG+GGDEL++A+GG +GPYIHVV+ GG+KGG +E+NL+K + Sbjct: 359 LMAGGWAPLQQMTMFVDPAGDGGDELSYAVGGTLGPYIHVVSIGGWKGGFAEENLEKCIA 418 Query: 417 LCKDFGVKVVLVEKNMGAGTVTQLVRNHFLGIGPD-GKQRLAGVGVDERHKTGQKELRII 475 L +GVKV+ VEKN+GAG V QL RN+ I PD GK R G+G+++R K+GQKE RII Sbjct: 419 LAARYGVKVIYVEKNLGAGAVGQLFRNYMRSINPDTGKPRYEGIGIEDRQKSGQKERRII 478 Query: 476 NTIRPVMQKHRLVLHRSAVEMDLELLKQYPLQHRDVRSGLYQMHNITSDRGSLTKDDRLD 535 +T+RP+MQ+HRL+ H SA++ D +QYP R RS +Q+HNIT+DRGSL KDDR+D Sbjct: 479 DTLRPIMQRHRLIFHVSAMDSDYVACQQYPADKRTERSVFHQIHNITTDRGSLPKDDRID 538 Query: 536 ALEGLVAELMGFLVIDEVKEQQRRDAAVVQEFLRNPMGTGPGVGRPLKSG 585 ALEGLV EL LV D+ + R+ A +E+L NPMG V R L G Sbjct: 539 ALEGLVRELTPSLVKDDEAATRAREEAAKKEWLNNPMGYTKSVLRSLGMG 588 >gi|8927|lcl|protein:vir:97005 Length: 632 # NCBI annotation: 40 # Family: family:all:697 # MgeID: mge:1644 # MgeName: K1-5 # Cross-refs: genbank:acc:YP_654141;genbank:gi:108862025;genbank:GeneI D:5075954 Length = 632 Score = 382 bits (981), Expect = e-108, Method: Compositional matrix adjust. Identities = 209/534 (39%), Positives = 311/534 (58%), Gaps = 14/534 (2%) Query: 38 MQEDIAEFMQYGPQRSMVAAQRGEAKSTIACLFGLWNLVQDPTHRVVLVSGAQDKAEENG 97 MQ DI +F+ YG + ++ A RG AK+T++ ++ ++ ++ +P R+++VS +AEE Sbjct: 53 MQADILKFLFYGHKYRLIEAPRGIAKTTLSAIYTVFRIIHEPHKRIMVVSQNAKRAEEIA 112 Query: 98 KLMHGLIHNWPLLQYLAPDKYAGDRTSVLEFDVHWSLKGVDKSASVNCLGITSSLQGYRG 157 + + L+++ PD YAGDR SV F++H++L+G DKS SV+C I + +QG R Sbjct: 113 GWVVKIFRGLDFLEFMLPDIYAGDRASVKAFEIHYTLRGSDKSPSVSCYSIEAGMQGARA 172 Query: 158 DLLIPDDIETTKNGLTATERAKLITLSKEFTSIVADRNGRILYLGTPQTRESIYNTLPGR 217 D+++ DD+E+ +N TA RA L L+KEF SI ++ G I+YLGTPQ SIYN LP R Sbjct: 173 DIILADDVESMQNARTAAGRALLEELTKEFESI--NQFGDIIYLGTPQNVNSIYNNLPAR 230 Query: 218 GFTVRVWPGRFPKASELPKYGDALAPSILERMALLGDRCQTGRGLDGTRGWSTDPERYSE 277 G++VR+W R+P + YGD LAP I++ M ++G GLDG G PE Y + Sbjct: 231 GYSVRIWTARYPSVEQEQCYGDFLAPMIVQDMK-DNPALRSGYGLDGNSGAPCAPEMYDD 289 Query: 278 EELCDKELDQGPETFELQFMLNTSLSDAARQQLKLRDLIVADFSHEQVPESVFWAADPRF 337 E L +KE+ QG F+LQFMLNT + DA R L+L +LI F E+VP W+ D Sbjct: 290 EVLIEKEISQGAAKFQLQFMLNTRMMDADRYPLRLNNLIFTSFGTEEVPVMPTWSNDSIN 349 Query: 338 KI-DLPQEFPVQSVEMFRPASVHEHFAQIKSMTLFLDPAGNG--GDELAFAIGGAVGPYI 394 I D P+ + M+RP + + + +++DPAG G GDE AI G +I Sbjct: 350 IIGDAPKYGNKPTDFMYRPVARPYEWGAVSRKIMYIDPAGGGKNGDETGVAIVFLHGTFI 409 Query: 395 HVVAWGGFKGGVSEDNLDKLVQLCKDFGVKVVLVEKNMGAGTVTQLVRNHFLGIGPDGKQ 454 +V G GG E +L+++VQ K GVK V +EKN G G +++ +F + Sbjct: 410 YVYQCFGVPGGYRESSLNRIVQAAKQAGVKEVFIEKNFGHGAFEAVIKPYF--------E 461 Query: 455 RLAGVGVDERHKTGQKELRIINTIRPVMQKHRLVLHRSAVEMDLELLKQYPLQHRDVRSG 514 R V ++E + TGQKELRII T+ P+M HRL+ + V+ D E ++ YPL+ R S Sbjct: 462 REWPVTLEEDYATGQKELRIIETLEPLMAAHRLIFNAEMVKSDFESVQHYPLELRMSYSL 521 Query: 515 LYQMHNITSDRGSLTKDDRLDALEGLVAELMGFLVIDEVKEQQRRDAAVVQEFL 568 QM NIT ++ SL DDRLDAL G + +L + DEV R A +++++ Sbjct: 522 FNQMSNITIEKNSLRHDDRLDALYGAIRQLTSQIDYDEVTRINRLRAQEMRDYI 575 >gi|15201|lcl|protein:vir:7028 Length: 631 # NCBI annotation: large terminase subunit # Family: family:all:697 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853601;genbank:gi:31711683;genbank:GeneID :1481809 Length = 631 Score = 379 bits (974), Expect = e-107, Method: Compositional matrix adjust. Identities = 215/560 (38%), Positives = 322/560 (57%), Gaps = 32/560 (5%) Query: 38 MQEDIAEFMQYGPQRSMVAAQRGEAKSTIACLFGLWNLVQDPTHRVVLVSGAQDKAEENG 97 +Q DI +F+ G + MV AQRG+AK+TIA ++ ++ ++ +P R+++VS +AEE Sbjct: 53 VQADILKFLFGGNKYRMVEAQRGQAKTTIAAIYAVFRIIHEPHKRIMIVSQTAKRAEEIA 112 Query: 98 KLMHGLIHNWPLLQYLAPDKYAGDRTSVLEFDVHWSLKGVDKSASVNCLGITSSLQGYRG 157 + + L+++ PD YAGD+ S+ F++H++L+G DKS SV C I + +QG R Sbjct: 113 GWVIKIFRGLDFLEFMLPDIYAGDKASIKGFEIHYTLRGSDKSPSVACYSIEAGMQGARA 172 Query: 158 DLLIPDDIETTKNGLTATERAKLITLSKEFTSIVADRNGRILYLGTPQTRESIYNTLPGR 217 D+++ DD+E+ +N TA RA L L+KEF SI ++ G I+YLGTPQ+ SIYN LP R Sbjct: 173 DIILADDVESLQNSRTAAGRALLEDLTKEFESI--NQFGDIIYLGTPQSVNSIYNNLPAR 230 Query: 218 GFTVRVWPGRFPKASELPKYGDALAPSILERMALLGD-RCQTGRGLDGTRGWSTDPERYS 276 G+ +R+WPGR+P + YGD LAP I R ++ D ++G G+DGT+G T PE Y Sbjct: 231 GYQIRIWPGRYPTLEQEACYGDFLAPMI--RQDMIDDPSLRSGYGIDGTQGAPTCPEMYD 288 Query: 277 EEELCDKELDQGPETFELQFMLNTSLSDAARQQLKLRDLIVADFSHEQVPESVFWAAD-- 334 +E+L +KE+ QG F+LQFMLNT L DA R L+L LI+ F + VPE W+ D Sbjct: 289 DEKLIEKEISQGTAKFQLQFMLNTRLMDADRYPLRLNQLILMSFGTDVVPEMPTWSNDSV 348 Query: 335 ------PRFKIDLPQEFPVQSVEMFRPASVHEHFAQIKSMTLFLDPAGNG--GDELAFAI 386 PRF + P ++ ++RP + I+ +++DPAG G GDE AI Sbjct: 349 NLISDAPRFG-NKPTDY------LYRPVPRPYEWRPIQRRLMYIDPAGGGKNGDETGVAI 401 Query: 387 GGAVGPYIHVVAWGGFKGGVSEDNLDKLVQLCKDFGVKVVLVEKNMGAGTVTQLVRNHFL 446 +G +I+V G GG SE L ++V+ K VK V +EKN G G +++ +F Sbjct: 402 VFLLGTFIYVYKVFGVPGGYSESALSRIVREAKQAEVKEVFIEKNFGHGAFEAVIKPYF- 460 Query: 447 GIGPDGKQRLAGVGVDERHKTGQKELRIINTIRPVMQKHRLVLHRSAVEMDLELLKQYPL 506 +R + E + TGQKE RII T+ P+M HR++ + ++ D++ ++ YPL Sbjct: 461 -------EREWPAELKEDYATGQKEARIIETLEPLMSAHRIIFNAEMIKQDIDSVQHYPL 513 Query: 507 QHRDVRSGLYQMHNITSDRGSLTKDDRLDALEGLVAELMGFLVIDEVKEQQRRDAAVVQE 566 + R S QM NIT ++G L DDRLDAL G + +L + DE R A ++E Sbjct: 514 EVRMSYSLFAQMSNITLEKGCLRHDDRLDALYGAIRQLTSQIDYDEANRINRLRAKEMRE 573 Query: 567 FLRNPMGTGPGVGRPLKSGH 586 +L M T P R +G Sbjct: 574 YLE--MMTDPLRRREFFTGQ 591 >gi|7495|lcl|protein:vir:103312 Length: 624 # NCBI annotation: TerL large terminase subunit-like protein # Family: family:all:697 # MgeID: mge:1609 # MgeName: Era103 # Cross-refs: genbank:acc:YP_001039677;genbank:gi:126000006;genbank:Ge neID:4818388 Length = 624 Score = 365 bits (938), Expect = e-103, Method: Compositional matrix adjust. Identities = 210/574 (36%), Positives = 323/574 (56%), Gaps = 21/574 (3%) Query: 5 ERFERAQLVREMYPEFVDFCRDAMEYLGYSM-------TWMQEDIAEFMQYGPQRSMVAA 57 ER+E ++E +P V+ + E + +++ +Q DI FM G + MV A Sbjct: 13 ERWELLSQLQEAFPNTVEGLLEFAEVVIHNLIPGNPHLNRIQADILRFMFTGKKYRMVEA 72 Query: 58 QRGEAKSTIACLFGLWNLVQDPTHRVVLVSGAQDKAEENGKLMHGLIHNWPLLQYLAPDK 117 QRG+AK+TIA ++ ++ ++ P R+++ S +AEE + + +L+++ PD Sbjct: 73 QRGQAKTTIAAIYAVFCIIHRPHFRILISSQTSKRAEEIAGWVIKIFRGLDILEFMMPDI 132 Query: 118 YAGDRTSVLEFDVHWSLKGVDKSASVNCLGITSSLQGYRGDLLIPDDIETTKNGLTATER 177 Y+GD+ S+ F++H++L+G S SV C I S+QG R DL+I DD+E+ +N TA R Sbjct: 133 YSGDKASIRGFEIHYTLRGSGASPSVACYSIEGSMQGARADLIIADDVESLQNSATAAGR 192 Query: 178 AKLITLSKEFTSIVADRNGRILYLGTPQTRESIYNTLPGRGFTVRVWPGRFPKASELPKY 237 KL +KEF SI ++ G ILYLGTPQ+ SIYN LP RG+ +R+WPGR+P + Y Sbjct: 193 VKLEEATKEFESI--NQTGDILYLGTPQSINSIYNNLPSRGYQLRIWPGRYPTVEQQVSY 250 Query: 238 GDALAPSILERMALLGDRCQTGRGLDGTRGWSTDPERYSEEELCDKELDQGPETFELQFM 297 GD LAP I+E M + G G+ +G T PE Y++E L +KE+ QG F+LQFM Sbjct: 251 GDFLAPLIIEDME-ANPELRRGGGITRLQGQPTCPEMYNDEALIEKEISQGTAKFQLQFM 309 Query: 298 LNTSLSDAARQQLKLRDLIVADFSHEQVPESVFWAADPRFKIDLPQEFPVQSVEMF-RPA 356 LNT LSD+ R LKL ++ +F ++VPE + D +I Q +S + F R A Sbjct: 310 LNTRLSDSERFPLKLSSIMFGNFGVDKVPEMPLHSTDSINEIKEAQRPGNKSTDRFYRMA 369 Query: 357 SVHEHFAQIKSMTLFLDPAGNG--GDELAFAIGGAVGPYIHVVAWGGFKGGVSEDNLDKL 414 + +++DPAG G GDE AI +G YI+V G KGG + +L+++ Sbjct: 370 PRPYEWKPATRRIMYIDPAGGGQNGDETGVAIVFLLGTYIYVYKCFGVKGGYEDADLEQI 429 Query: 415 VQLCKDFGVKVVLVEKNMGAGTVTQLVRNHFLGIGPDGKQRLAGVGVDERHKTGQKELRI 474 V K+ K V VEKN G G +++ F +RL + E + TGQKE RI Sbjct: 430 VMAAKEANCKEVFVEKNFGHGAFQAIIKPFF--------ERLHPCELQEDYATGQKEERI 481 Query: 475 INTIRPVMQKHRLVLHRSAVEMDLELLKQYPLQHRDVRSGLYQMHNITSDRGSLTKDDRL 534 I+T+ P++ HRLV + + D + +++Y L+ + S +Q+ NIT D+GSL DDR+ Sbjct: 482 IDTLEPLLSAHRLVFNTEIIFEDNKAIQKYALEKQASYSLFHQIANITRDKGSLRHDDRI 541 Query: 535 DALEGLVAELMGFLVIDEVKEQQRRDAAVVQEFL 568 DAL G V +L + DE+ +Q R ++++ Sbjct: 542 DALYGAVRQLTTDIDYDEMAKQSREQMEQARDYI 575 >gi|3994|lcl|protein:vir:99686 Length: 586 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:1523 # MgeName: VP4 # Cross-refs: genbank:acc:YP_249597;genbank:gi:68299748;genbank:GeneID :3800001 Length = 586 Score = 283 bits (723), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 182/535 (34%), Positives = 269/535 (50%), Gaps = 24/535 (4%) Query: 36 TWMQEDIAEFMQYGPQRSMV-AAQRGEAKSTIACLFGLWNLVQDPTHRVVLVSGAQDKAE 94 T Q+D+A + G +R + A RG KS I C F +W L +P + ++VS ++++A+ Sbjct: 36 TRCQKDMARKLAAGDERRFILQAFRGIGKSFITCAFVVWKLWNNPQLKFMIVSASKERAD 95 Query: 95 ENGKLMHGLIHNWPLLQYLAPDKYAGDRTSVLEFDVHWSLKGVDKSASVNCLGITSSLQG 154 N + +I P L L P R SV+ FDV L D S SV +GIT L G Sbjct: 96 ANSIFIKRIIDLLPFLHELKP--RPEQRDSVISFDV--GLAKPDHSPSVKSVGITGQLTG 151 Query: 155 YRGDLLIPDDIETTKNGLTATERAKLITLSKEFTSIVADRNGRILYLGTPQTRESIYNTL 214 R D+LI DD+E N T R +L L KEF +I+ NG I+YLGTPQ ++Y L Sbjct: 152 SRADILIADDVEVPNNSATQAARDRLGELVKEFDAILKP-NGTIIYLGTPQCEMTLYREL 210 Query: 215 PGRGFTVRVWPGRFPK-ASELPKYGDALAPSILERMALLGDRCQTGRGLDGTRGWSTDPE 273 RG+ +WP R+PK ++L YG+ LAP + + + + TDP Sbjct: 211 ENRGYKTTIWPARYPKDMNDLETYGNRLAPMLKDELM---------ENPEAYWWQPTDPV 261 Query: 274 RYSEEELCDKELDQGPETFELQFMLNTSLSDAARQQLKLRDLIVADFSHEQVPESVFWAA 333 R+ +E+L ++EL G F LQFMLN +LSDA + LKLRD IVA ++ P + W Sbjct: 262 RFDDEDLRERELSYGKAGFALQFMLNPNLSDAEKYPLKLRDFIVAALEVDKAPLTYGWLP 321 Query: 334 DPRFKIDLPQEFPVQSVEMFRPASVHEHFAQIKSMTLFLDPAGNGGDELAFAIGGAVGPY 393 +P+ + + ++ R + A S + +DP+G G DE + + + Y Sbjct: 322 NPQNLLQNVPQVGLKGDTYHRYDVADKRQASYTSKIMAIDPSGRGKDETGYCVLYFLNGY 381 Query: 394 IHVVAWGGFKGGVSEDNLDKLVQLCKDFGVKVVLVEKNMGAGTVTQLVRNHFLGIGPDGK 453 I+++ GGF+GG + L+ L ++ K + V VL E N G G FL I Sbjct: 382 IYLMETGGFRGGYEDSTLEALAKVAKRWNVNEVLCEGNFGDGM--------FLKIFSPVL 433 Query: 454 QRLAGVGVDERHKTGQKELRIINTIRPVMQKHRLVLHRSAVEMDLELLKQYPLQHRDVRS 513 R+ + E TGQKE+RI +T+ PVM HR+V+ SA++ D + + H S Sbjct: 434 NRVHRCALTETKSTGQKEMRIADTLEPVMGAHRIVVMESAIQKDYQTARNVDGTHDIKYS 493 Query: 514 GLYQMHNITSDRGSLTKDDRLDALEGLVAELMGFLVIDEVKEQQRRDAAVVQEFL 568 YQ+ +T +RG+L DDRLDA VA + L D A ++E L Sbjct: 494 MFYQLTRLTRERGALAHDDRLDAFAIGVAYFVEMLEKDSQAGADDTTAEWLEEML 548 >gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA maturation protein # Family: family:all:697 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_042010;swissprot:sw:p03694;genbank:gi:962 7482;goa:P03694;uniprot:P03694;genbank:GeneID:1261062 Length = 586 Score = 275 bits (702), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 185/568 (32%), Positives = 287/568 (50%), Gaps = 28/568 (4%) Query: 10 AQLVREMYPEFVDFCRDAMEYLGYSM-TWMQEDIAEFMQYGPQRSMV-AAQRGEAKSTIA 67 A +V ++ +FV F + L + T Q D+A+ + G + + A RG KS I Sbjct: 9 ALVVAQLKGDFVAFLFVLWKALNLPVPTKCQIDMAKVLANGDNKKFILQAFRGIGKSFIT 68 Query: 68 CLFGLWNLVQDPTHRVVLVSGAQDKAEENGKLMHGLIHNWPLLQYLAPDKYAGDRTSVLE 127 C F +W+L +DP ++++VS ++++A+ N + +I P L L P G R SV+ Sbjct: 69 CAFVVWSLWRDPQLKILIVSASKERADANSIFIKNIIDLLPFLSELKPR--PGQRDSVIS 126 Query: 128 FDVHWSLKGVDKSASVNCLGITSSLQGYRGDLLIPDDIETTKNGLTATERAKLITLSKEF 187 FDV D S SV +GIT L G R D++I DD+E N T R KL TL +EF Sbjct: 127 FDV--GPANPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATMGAREKLWTLVQEF 184 Query: 188 TSIVADR-NGRILYLGTPQTRESIYNTLP-GRGFTVRVWPGRFPKASELP-KYGDALAPS 244 +++ + R++YLGTPQT ++Y L RG+T +WP +P+ E Y LAP Sbjct: 185 AALLKPLPSSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRTREENLYYSQRLAPM 244 Query: 245 ILERMALLGDRCQTGRGLDGTRGWSTDPERYSEEELCDKELDQGPETFELQFMLNTSLSD 304 + R + + G TDP R+ ++L ++EL+ G F LQFMLN +LSD Sbjct: 245 L---------RAEYDENPEALAGTPTDPVRFDRDDLRERELEYGKAGFTLQFMLNPNLSD 295 Query: 305 AARQQLKLRDLIVADFSHEQVPESVFWAADPRFKI-DLPQEFPVQSVEMFRPASVHEHFA 363 A + L+LRD IVA E+ P W + + I DLP ++ ++ + Sbjct: 296 AEKYPLRLRDAIVAALDLEKAPMHYQWLPNRQNIIEDLPN-VGLKGDDLHTYHDCSNNSG 354 Query: 364 QIKSMTLFLDPAGNGGDELAFAIGGAVGPYIHVVAWGGFKGGVSEDNLDKLVQLCKDFGV 423 Q + L +DP+G G DE +A+ + YI+++ GGF+ G S+ L+ L + K +GV Sbjct: 355 QYQQKILVIDPSGRGKDETGYAVLYTLNGYIYLMEAGGFRDGYSDKTLELLAKKAKQWGV 414 Query: 424 KVVLVEKNMGAGTVTQLVRNHFLGIGPDGKQRLAGVGVDERHKTGQKELRIINTIRPVMQ 483 + V+ E N G G ++ L + ++E G KE+RI +T+ PVMQ Sbjct: 415 QTVVYESNFGDGMFGKVFSPILL--------KHHNCAMEEIRARGMKEMRICDTLEPVMQ 466 Query: 484 KHRLVLHRSAVEMDLELLKQYPLQHRDVRSGLYQMHNITSDRGSLTKDDRLDALEGLVAE 543 HRLV+ + D + + +H S YQM IT ++G+L DDRLDAL + Sbjct: 467 THRLVIRDEVIRADYQSARDVDGKHDVKYSLFYQMTRITREKGALAHDDRLDALALGIEY 526 Query: 544 LMGFLVIDEVKEQQRRDAAVVQEFLRNP 571 L + +D VK + A ++E + P Sbjct: 527 LRESMQLDSVKVEGEVLADFLEEHMMRP 554 >gi|14546|lcl|protein:vir:8897 Length: 582 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:161 # MgeName: gh-1 # Cross-refs: genbank:acc:NP_813786;genbank:gi:29366741;genbank:GeneID :1258833 Length = 582 Score = 273 bits (699), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 186/542 (34%), Positives = 269/542 (49%), Gaps = 35/542 (6%) Query: 36 TWMQEDIAEFMQYGPQRSMV-AAQRGEAKSTIACLFGLWNLVQDPTHRVVLVSGAQDKAE 94 T Q D+A+ + G +R + A RG KS I C F +W L +P + ++VS ++++A+ Sbjct: 35 TKCQIDMAKKLSAGDERRFILQAFRGIGKSFITCAFVVWKLWNNPDLKFMIVSASKERAD 94 Query: 95 ENGKLMHGLIHNWPLLQYLAPDKYAGDRTSVLEFDVHWSLKGVDKSASVNCLGITSSLQG 154 N + +I P L L P G R S L FDV + D S SV +GIT L G Sbjct: 95 ANSVFIKRIIDLLPFLHELKPG--PGQRDSSLAFDVGPAKP--DHSPSVKSVGITGQLTG 150 Query: 155 YRGDLLIPDDIETTKNGLTATERAKLITLSKEFTSIVADRNGRILYLGTPQTRESIYNTL 214 R D+LI DD+E N T T R L L KEF +I+ G I+YLGTPQT ++Y L Sbjct: 151 SRADILIADDVEVPNNSATQTARDHLGELVKEFDAILKP-GGTIIYLGTPQTEMTLYREL 209 Query: 215 PGRGFTVRVWPGRFPK-ASELPKYGDALAPSILERMALLGDRCQTGRGLDGTRGWS-TDP 272 GRG+ +WP R+PK ++ YG LAP +L Q DG+ W+ TD Sbjct: 210 EGRGYVTTIWPARYPKDQADWDSYGPRLAP-------MLAAELQA----DGSLFWAPTDE 258 Query: 273 ERYSEEELCDKELDQGPETFELQFMLNTSLSDAARQQLKLRDLIVADFSHEQVPESVFWA 332 R+ +++L ++EL G F LQFMLN +LSD + LKLRD IV F+ ++ P ++ W Sbjct: 259 VRFDDKDLRERELSYGKGGFALQFMLNPNLSDMEKYPLKLRDFIVGTFAQDKGPTTLIWM 318 Query: 333 ADPRFKIDLPQEFPVQSVEMFRPASVHEHFAQIKSMTLFLDPAGNGGDELAFAIGGAVGP 392 + + ++ R SV + A L +DP+G G DE +A+ + Sbjct: 319 PNAANECKGVPVVGLKGDRFHRYESVGQATASYAQKILVIDPSGRGKDETGYAVLYQLNG 378 Query: 393 YIHVVAWGGFKGGVSEDNLDKLVQLCKDFGVKVVLVEKNMGAGTVTQLVRNHFLGIGPDG 452 YI ++ GGF+GG + L L + K V ++VE N G G +L+ P Sbjct: 379 YIFLMDAGGFRGGYEDTVLQALANIAKIHKVNEIVVEGNFGDGMYIKLLAPVVTATFP-- 436 Query: 453 KQRLAGVGVDERHKTGQKELRIINTIRPVMQKHRLVLHRSAVEMDLELLKQYPLQHRDVR 512 + E GQKELRI + + PV+ H+LV+ S +E D Sbjct: 437 ------CAITEVKSKGQKELRICDVLEPVLGSHKLVIQESLIEKDYRTALNADGTTDTSY 490 Query: 513 SGLYQMHNITSDRGSLTKDDRLDALEGLVAELMGFLVIDEVKEQQRR--DAAVVQEFLRN 570 S LYQ+ IT +RGSL DDRLDAL +G E E+ + ++ ++QEFL + Sbjct: 491 SLLYQLTRITRERGSLAHDDRLDALA------IGVQFFTEALERDSKVGESEMLQEFLES 544 Query: 571 PM 572 M Sbjct: 545 HM 546 >gi|16205|lcl|protein:vir:1554 Length: 587 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052122;swissprot:trembl:q9t0z4;genbank:gi :9634048;uniprot:Q9T0Z4;genbank:GeneID:1262409 Length = 587 Score = 273 bits (699), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 179/555 (32%), Positives = 281/555 (50%), Gaps = 27/555 (4%) Query: 36 TWMQEDIAEFMQYGPQRSMV-AAQRGEAKSTIACLFGLWNLVQDPTHRVVLVSGAQDKAE 94 T Q D+A + G + + A RG KS I C F +W L +DP ++++VS ++++A+ Sbjct: 37 TKCQIDMARCLANGDNKKFILQAFRGIGKSFITCAFVVWTLWRDPQLKILIVSASKERAD 96 Query: 95 ENGKLMHGLIHNWPLLQYLAPDKYAGDRTSVLEFDVHWSLKGVDKSASVNCLGITSSLQG 154 N + +I P L L P G R SV+ FDV D S SV +GIT L G Sbjct: 97 ANSIFIKNIIDLLPFLAELKP--RPGQRDSVISFDV--GPAKPDHSPSVKSVGITGQLTG 152 Query: 155 YRGDLLIPDDIETTKNGLTATERAKLITLSKEFTSIVADR-NGRILYLGTPQTRESIYNT 213 R D++I DD+E N T R KL TL +EF +++ R++YLGTPQT ++Y Sbjct: 153 SRADIIIADDVEIPSNSATQGAREKLWTLVQEFAALLKPLPTSRVIYLGTPQTEMTLYKE 212 Query: 214 LP-GRGFTVRVWPGRFPKASELP-KYGDALAPSILERMALLGDRCQTGRGLDGTRGWSTD 271 L RG+T +WP +P++ E YGD LAP + E G + +G TD Sbjct: 213 LEDNRGYTTIIWPALYPRSREEDLYYGDRLAPMLREEF---------NDGFEMLQGQPTD 263 Query: 272 PERYSEEELCDKELDQGPETFELQFMLNTSLSDAARQQLKLRDLIVADFSHEQVPESVFW 331 P R+ E+L ++EL+ G F LQFMLN +LSDA + L+LRD IV E+ P W Sbjct: 264 PVRFDMEDLRERELEYGKAGFTLQFMLNPNLSDAEKYPLRLRDAIVCGLDFEKAPMHYQW 323 Query: 332 AADPRFKIDLPQEFPVQSVEMFRPASVHEHFAQIKSMTLFLDPAGNGGDELAFAIGGAVG 391 + + + + ++ ++ S ++ Q + L +DP+G G DE +A+ + Sbjct: 324 LPNRQNRNEELPNVGLKGDDIHSYHSCSQNTGQYQQRILVIDPSGRGKDETGYAVLFTLN 383 Query: 392 PYIHVVAWGGFKGGVSEDNLDKLVQLCKDFGVKVVLVEKNMGAGTVTQLVRNHFLGIGPD 451 YI+++ GGF+ G S+ L+ L + K + V+ V+ E N G G ++ L Sbjct: 384 GYIYLMEAGGFRDGYSDKTLESLAKKAKQWKVQTVVFESNFGDGMFGKVFSPVLL----- 438 Query: 452 GKQRLAGVGVDERHKTGQKELRIINTIRPVMQKHRLVLHRSAVEMDLELLKQYPLQHRDV 511 + ++E G KELRI +T+ PV+ HRLV+ + D + + +H DV Sbjct: 439 ---KHHAAAMEEIRARGMKELRICDTLEPVLSTHRLVIRDEVIREDYQTARDADGKH-DV 494 Query: 512 RSGL-YQMHNITSDRGSLTKDDRLDALEGLVAELMGFLVIDEVKEQQRRDAAVVQEFLRN 570 R L YQ+ + ++G++ DDRLDAL V L + +D VK + A ++E + + Sbjct: 495 RYSLFYQLTRMAREKGAVAHDDRLDALALGVEFLRSTMELDAVKVEAEVLEAFLEEHMEH 554 Query: 571 PMGTGPGVGRPLKSG 585 P+ + V + G Sbjct: 555 PIHSAGHVVTSMVDG 569 >gi|13826|lcl|protein:vir:3376 Length: 586 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523347;swissprot:trembl:q8w5t4;genbank:gi :17570838;uniprot:Q8W5T4;genbank:GeneID:927460 Length = 586 Score = 273 bits (697), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 184/582 (31%), Positives = 295/582 (50%), Gaps = 28/582 (4%) Query: 10 AQLVREMYPEFVDFCRDAMEYLGYSM-TWMQEDIAEFMQYGPQRSMV-AAQRGEAKSTIA 67 A +V ++ +FV F + L + T Q D+A+ + G + + A RG KS I Sbjct: 9 ALVVAQLKGDFVAFLFVLWKALNLPVPTKCQIDMAKVLANGDNKKFILQAFRGIGKSFIT 68 Query: 68 CLFGLWNLVQDPTHRVVLVSGAQDKAEENGKLMHGLIHNWPLLQYLAPDKYAGDRTSVLE 127 C F +W L +DP ++++VS ++++A+ N + +I P L L P G R SV+ Sbjct: 69 CAFVVWTLWRDPQLKILIVSASKERADANSIFIKNIIDLLPFLAELKP--RPGQRDSVIS 126 Query: 128 FDVHWSLKGVDKSASVNCLGITSSLQGYRGDLLIPDDIETTKNGLTATERAKLITLSKEF 187 FDV D S SV +GIT L G R D++I DD+E N T R KL TL +EF Sbjct: 127 FDV--GPAKPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATQGAREKLWTLVQEF 184 Query: 188 TSIVADR-NGRILYLGTPQTRESIYNTLP-GRGFTVRVWPGRFPKASELP-KYGDALAPS 244 +++ R++YLGTPQT ++Y L RG+T +WP +P++ E YG+ LAP Sbjct: 185 AALLKPLPTSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRSREEDLYYGERLAPM 244 Query: 245 ILERMALLGDRCQTGRGLDGTRGWSTDPERYSEEELCDKELDQGPETFELQFMLNTSLSD 304 + R + G + +G TDP R+ E+L ++EL+ G F LQFMLN +LSD Sbjct: 245 L---------REEFNDGFEMLQGQPTDPVRFDMEDLRERELEYGKAGFTLQFMLNPNLSD 295 Query: 305 AARQQLKLRDLIVADFSHEQVPESVFWAADPRFKIDLPQEFPVQSVEMFRPASVHEHFAQ 364 A + L+LRD IV E+ P W + + + + ++ ++ S ++ Q Sbjct: 296 AEKYPLRLRDAIVCGLDFEKAPMHYQWLPNRQNRNEELPNVGLKGDDIHSYHSCSQNTGQ 355 Query: 365 IKSMTLFLDPAGNGGDELAFAIGGAVGPYIHVVAWGGFKGGVSEDNLDKLVQLCKDFGVK 424 + L +DP+G G DE +A+ + YI+++ GGF+ G S+ L+ L + K + V+ Sbjct: 356 YQQRILVIDPSGRGKDETGYAVLFTLNGYIYLMEAGGFRDGYSDKTLESLAKKAKQWKVQ 415 Query: 425 VVLVEKNMGAGTVTQLVRNHFLGIGPDGKQRLAGVGVDERHKTGQKELRIINTIRPVMQK 484 V+ E N G G ++ L + ++E G KELRI +T+ PV+ Sbjct: 416 TVVFESNFGDGMFGKVFSPVLL--------KHHAAALEEIRARGMKELRICDTLEPVLST 467 Query: 485 HRLVLHRSAVEMDLELLKQYPLQHRDVRSGL-YQMHNITSDRGSLTKDDRLDALEGLVAE 543 HRLV+ + D + + +H DVR L YQ+ + ++G++ DDRLDAL V Sbjct: 468 HRLVIRDEVIREDYQTARDADGKH-DVRYSLFYQLTRMAREKGAVAHDDRLDALALGVEF 526 Query: 544 LMGFLVIDEVKEQQRRDAAVVQEFLRNPMGTGPGVGRPLKSG 585 L + +D VK + A ++E + +P+ + V + G Sbjct: 527 LRSTMELDAVKVEAEVLEAFLEEHMEHPIHSAGHVVTAMVDG 568 >gi|3734|lcl|protein:vir:94555 Length: 585 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:1516 # MgeName: Berlin # Cross-refs: genbank:acc:YP_919024;genbank:gi:119637788;genbank:GeneI D:5179315 Length = 585 Score = 272 bits (696), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 184/572 (32%), Positives = 296/572 (51%), Gaps = 34/572 (5%) Query: 8 ERAQLVREMYPEFVDFCRDAMEYLGYSM-TWMQEDIAEFMQYGPQRSMV-AAQRGEAKST 65 + A +V ++ +FV F + L T Q D+A + G + + A RG KS Sbjct: 7 KNALIVAQLKGDFVAFLFVLWKALNLPKPTKCQIDMARTLADGDHKKFILQAFRGIGKSF 66 Query: 66 IACLFGLWNLVQDPTHRVVLVSGAQDKAEENGKLMHGLIHNWPLLQYLAPDKYAGDRTSV 125 I C F +W L +DP +V++VS ++++A+ N + +I P L L P G R SV Sbjct: 67 ITCAFVVWVLWRDPQLKVLIVSASKERADANSIFIKNIIDLLPFLAELKP--RPGQRDSV 124 Query: 126 LEFDVHWSLKGVDKSASVNCLGITSSLQGYRGDLLIPDDIETTKNGLTATERAKLITLSK 185 + FDV L D S SV +GIT L G R D++I DD+E N T++ R KL TL Sbjct: 125 ISFDV--GLAKPDHSPSVKSVGITGQLTGSRADIIIADDVEVPGNSSTSSAREKLWTLVT 182 Query: 186 EFTSIVADR-NGRILYLGTPQTRESIYNTLP-GRGFTVRVWPGRFPKA-SELPKYGDALA 242 EF +++ R++YLGTPQT ++Y L +G++ +WP ++P+ +E YGD LA Sbjct: 183 EFAALLKPLPTSRVIYLGTPQTEMTLYKELEDNKGYSTVIWPAQYPRNDAEALYYGDRLA 242 Query: 243 PSILERMALLGDRCQTGRGLDGTRGWSTDPERYSEEELCDKELDQGPETFELQFMLNTSL 302 P + + + G + RG TDP R+ ++L ++EL+ G + LQFMLN +L Sbjct: 243 PML---------KAEYDEGFELLRGQPTDPVRFDTDDLRERELEYGKAGYTLQFMLNPNL 293 Query: 303 SDAARQQLKLRDLIVADFSHEQVPESVFWAADPRFKIDLPQEFPVQSVEMFRPASVHEHF 362 SDA + L+LRD IV E+ P S W + + + + ++ ++ + Sbjct: 294 SDAEKYPLRLRDAIVCAVDPERAPLSYQWLPNRQNRNEELPNVGLKGDDIHSFHTCSSRT 353 Query: 363 AQIKSMTLFLDPAGNGGDELAFAIGGAVGPYIHVVAWGGFKGGVSEDNLDKLVQLCKDFG 422 A+ +S L +DP+G G DE +A+ ++ YI+++ GGF+GG + L+KL + K + Sbjct: 354 AEYQSKILVIDPSGRGKDETGYAVLYSLNGYIYLMEVGGFRGGYDDATLEKLAKKAKQWK 413 Query: 423 VKVVLVEKNMGAGTVTQLVRNHFLGIGPDGKQRLAGVGVDERHKTGQKELRIINTIRPVM 482 V+ V+ E N G G ++ L + ++E G KE+RI +TI P+M Sbjct: 414 VQTVVHESNFGDGMFGKIFSPVLL--------KHHKAALEEIRAKGMKEMRICDTIEPLM 465 Query: 483 QKHRLVLHRSAVEMDLELLKQYPLQHRDVR-SGLYQMHNITSDRGSLTKDDRLDALE-GL 540 H+L++ + D + + +H DVR S YQM +T +RG++ DDRLDA+ G+ Sbjct: 466 GSHKLIIRDEVIREDYQTSRDLDGKH-DVRYSAFYQMTRMTRERGAVAHDDRLDAIALGI 524 Query: 541 VAELMGFLVIDEVKEQQRRDAAVVQEFLRNPM 572 G LV ++ E++ + EFL M Sbjct: 525 EWLREGMLVDSKIGEEE-----MTLEFLEAHM 551 >gi|16146|lcl|protein:vir:10462 Length: 586 # NCBI annotation: DNA maturase B # Family: family:all:697 # MgeID: mge:184 # MgeName: phiA1122 # Cross-refs: genbank:acc:NP_848309;genbank:gi:30387500;genbank:GeneID :1733974 Length = 586 Score = 272 bits (696), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 184/568 (32%), Positives = 287/568 (50%), Gaps = 28/568 (4%) Query: 10 AQLVREMYPEFVDFCRDAMEYLGYSM-TWMQEDIAEFMQYGPQRSMV-AAQRGEAKSTIA 67 A +V ++ +FV F + L + T Q D+A+ + G + + A RG KS I Sbjct: 9 ALVVAQLKGDFVAFLFVLWKALNLPVPTKCQIDMAKVLANGDNKKFILQAFRGIGKSFIT 68 Query: 68 CLFGLWNLVQDPTHRVVLVSGAQDKAEENGKLMHGLIHNWPLLQYLAPDKYAGDRTSVLE 127 C F +W+L +DP ++++VS ++++A+ N + +I P L L P G R SV+ Sbjct: 69 CAFVVWSLWRDPQLKILIVSASKERADANSIFIKNIIDLLPFLAELKPR--PGQRDSVIS 126 Query: 128 FDVHWSLKGVDKSASVNCLGITSSLQGYRGDLLIPDDIETTKNGLTATERAKLITLSKEF 187 FDV D S SV +GIT L G R D++I DD+E N T R KL TL +EF Sbjct: 127 FDV--GPAKPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATMGAREKLWTLVQEF 184 Query: 188 TSIVAD-RNGRILYLGTPQTRESIYNTLP-GRGFTVRVWPGRFPKASELP-KYGDALAPS 244 +++ + R++YLGTPQT ++Y L RG+T +WP +P+ E Y LAP Sbjct: 185 AALLKPLTSSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRTREENLYYSQRLAPM 244 Query: 245 ILERMALLGDRCQTGRGLDGTRGWSTDPERYSEEELCDKELDQGPETFELQFMLNTSLSD 304 + R + + G TDP R+ ++L ++EL+ G F LQFMLN +LSD Sbjct: 245 L---------RAEYDENPEALAGTPTDPVRFDRDDLRERELEYGKAGFTLQFMLNPNLSD 295 Query: 305 AARQQLKLRDLIVADFSHEQVPESVFWAADPRFKI-DLPQEFPVQSVEMFRPASVHEHFA 363 A + L+LRD IVA E+ P W + + I DLP ++ ++ + Sbjct: 296 AEKYPLRLRDAIVAALDLEKAPMHYQWLPNRQNIIEDLPN-VGLKGDDLHTYHDCSNNSG 354 Query: 364 QIKSMTLFLDPAGNGGDELAFAIGGAVGPYIHVVAWGGFKGGVSEDNLDKLVQLCKDFGV 423 Q + L +DP+G G DE +A+ + YI+++ GGF+ G S+ L+ L + K +GV Sbjct: 355 QYQQKILVIDPSGRGKDETGYAVLYTLNGYIYLMEAGGFRDGYSDKTLELLAKKAKQWGV 414 Query: 424 KVVLVEKNMGAGTVTQLVRNHFLGIGPDGKQRLAGVGVDERHKTGQKELRIINTIRPVMQ 483 + V+ E N G G ++ L + ++E G KE+RI +T+ PVMQ Sbjct: 415 QTVVYESNFGDGMFGKVFSPILL--------KHHNCAMEEIRARGMKEMRICDTLEPVMQ 466 Query: 484 KHRLVLHRSAVEMDLELLKQYPLQHRDVRSGLYQMHNITSDRGSLTKDDRLDALEGLVAE 543 HRLV+ + D + + ++ S YQM IT ++G+L DDRLDAL + Sbjct: 467 THRLVIRDEVIRADYQSARDVDGKYDVKYSLFYQMTRITREKGALAHDDRLDALALGIEY 526 Query: 544 LMGFLVIDEVKEQQRRDAAVVQEFLRNP 571 L + +D VK + A ++E + P Sbjct: 527 LRESMQLDSVKVEGEVLADFLEEHMMRP 554 >gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: maturation protein # Family: family:all:697 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338131;genbank:gi:77118209;genbank:GeneID :3707752 Length = 575 Score = 270 bits (691), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 178/539 (33%), Positives = 265/539 (49%), Gaps = 28/539 (5%) Query: 36 TWMQEDIAEFMQYGPQRSMV-AAQRGEAKSTIACLFGLWNLVQDPTHRVVLVSGAQDKAE 94 T Q D+A+ + G R + A RG KS I C F +W L +P + ++VS ++++A+ Sbjct: 26 TRCQIDMAKKLSAGDNRRFILQAFRGIGKSFITCAFVVWKLWNNPDLKFMIVSASKERAD 85 Query: 95 ENGKLMHGLIHNWPLLQYLAPDKYAGDRTSVLEFDVHWSLKGVDKSASVNCLGITSSLQG 154 N + +I P L+ L P + G R +V+ FDV D S SV +GIT L G Sbjct: 86 ANSIFIKRIIDLMPQLKELKPKQ--GQRDAVISFDV--GPAKPDHSPSVKSVGITGQLTG 141 Query: 155 YRGDLLIPDDIETTKNGLTATERAKLITLSKEFTSIVADRNGRILYLGTPQTRESIYNTL 214 R D+LI DD+E N T R +L L KEF +I+ G I+YLGTPQ ++Y L Sbjct: 142 SRADILIADDVEVPNNSATQAARDRLSELVKEFDAILKP-GGTIIYLGTPQNEMTLYREL 200 Query: 215 PGRGFTVRVWPGRFPK-ASELPKYGDALAPSILERMALLGDRCQTGRGLDGTRGWSTDPE 273 GRG+T +WP R+P+ + YGD LAP + + + + TD Sbjct: 201 EGRGYTTTIWPARYPRDRKDWQSYGDRLAPML---------QAELEEDPESFYWRPTDEV 251 Query: 274 RYSEEELCDKELDQGPETFELQFMLNTSLSDAARQQLKLRDLIVADFSHEQVPESVFWAA 333 R+ + +L ++EL G F LQFMLN +LSDA + LKLRDLIVAD P W Sbjct: 252 RFDDTDLKERELSYGKAGFALQFMLNPNLSDAEKYPLKLRDLIVADLDPASSPMVYQWLP 311 Query: 334 DPRFKIDLPQEFPVQSVEMFRPASVHEHFAQIKSMTLFLDPAGNGGDELAFAIGGAVGPY 393 +P+ K + + +V F+ L +DP+G G DE +A+ + Y Sbjct: 312 NPQNKREDVPNVGLMGDSYHTYQTVGSAFSSYTQKILVIDPSGRGKDETGYAVLYQLNGY 371 Query: 394 IHVVAWGGFKGGVSEDNLDKLVQLCKDFGVKVVLVEKNMGAGTVTQLVRNHFLGIGPDGK 453 I + GG +GG + L+ L ++ + + V ++E N G G +L + I P Sbjct: 372 IFAMEVGGMRGGYEDSTLEALAKIGRKWKVNEYVIEGNFGDGMYLELFKPVAARIHP--- 428 Query: 454 QRLAGVGVDERHKTGQKELRIINTIRPVMQKHRLVLHRSAVEMDLELLKQYPLQHRDVRS 513 V E GQKELRI + + P+M HRL+++ +A+ D + + S Sbjct: 429 -----AAVTEVKSKGQKELRICDVLEPIMGSHRLIVNAAAIVQDYQSASDKDGVRNPIYS 483 Query: 514 GLYQMHNITSDRGSLTKDDRLDALEGLVAELMGFLVIDEVKEQQRRDAAVVQEFLRNPM 572 YQM I+ +RG+L DDRLDAL A + F V K+ + + V +E+L M Sbjct: 484 LFYQMTRISRERGALAHDDRLDAL----AIGVQFFVESMAKDANKGEREVTEEWLEEQM 538 >gi|10294|lcl|protein:vir:105656 Length: 405 # NCBI annotation: putative large terminase subunit # Family: family:all:697 # MgeID: mge:1674 # MgeName: K1E # Cross-refs: genbank:acc:YP_425018;genbank:gi:83571766;uniprot:Q2WC34 ;genbank:GeneID:3837297 Length = 405 Score = 259 bits (662), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 134/340 (39%), Positives = 204/340 (60%), Gaps = 4/340 (1%) Query: 38 MQEDIAEFMQYGPQRSMVAAQRGEAKSTIACLFGLWNLVQDPTHRVVLVSGAQDKAEENG 97 MQ DI +F+ YG + ++ A RG AK+T++ ++ ++ ++ +P R+++VS +AEE Sbjct: 53 MQADILKFLFYGHKYRLIEAPRGIAKTTLSAIYTVFRIIHEPHKRIMVVSQNAKRAEEIA 112 Query: 98 KLMHGLIHNWPLLQYLAPDKYAGDRTSVLEFDVHWSLKGVDKSASVNCLGITSSLQGYRG 157 + + L+++ PD YAGDR SV F++H++L+G DKS SV+C I + +QG R Sbjct: 113 GWVVKIFRGLDFLEFMLPDIYAGDRASVKAFEIHYTLRGSDKSPSVSCYSIEAGMQGARA 172 Query: 158 DLLIPDDIETTKNGLTATERAKLITLSKEFTSIVADRNGRILYLGTPQTRESIYNTLPGR 217 D+++ DD+E+ +N TA RA L L+KEF SI ++ G I+YLGTPQ SIYN LP R Sbjct: 173 DIILADDVESMQNARTAAGRALLEELTKEFESI--NQFGDIIYLGTPQNVNSIYNNLPAR 230 Query: 218 GFTVRVWPGRFPKASELPKYGDALAPSILERMALLGDRCQTGRGLDGTRGWSTDPERYSE 277 G++VR+W R+P + YGD LAP I++ M ++G GLDG G PE Y + Sbjct: 231 GYSVRIWTARYPSVEQEQCYGDFLAPMIVQDMK-DNPALRSGYGLDGNSGAPCAPEMYDD 289 Query: 278 EELCDKELDQGPETFELQFMLNTSLSDAARQQLKLRDLIVADFSHEQVPESVFWAADPRF 337 + L +KE+ QG F+LQFMLNT + DA R L+L +LI F E+VP W+ D Sbjct: 290 DVLIEKEISQGAAKFQLQFMLNTRMMDADRYPLRLNNLIFTSFGTEEVPVMPTWSNDSIN 349 Query: 338 KI-DLPQEFPVQSVEMFRPASVHEHFAQIKSMTLFLDPAG 376 I D P+ + M+RP + + + +++DPAG Sbjct: 350 IIGDAPKYGNKPTDFMYRPVARPYEWGAVTRKIMYIDPAG 389 >gi|11501|lcl|protein:vir:78718 Length: 574 # NCBI annotation: DNA packaging protein # Family: family:all:697 # MgeID: mge:1856 # MgeName: Syn5 # Cross-refs: genbank:acc:YP_001285469;genbank:gi:148724503;genbank:Ge neID:5220189 Length = 574 Score = 251 bits (641), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 164/519 (31%), Positives = 254/519 (48%), Gaps = 25/519 (4%) Query: 42 IAEFMQYGPQRSMVAAQRGEAKSTIACLFGLWNLVQDPTHRVVLVSGAQDKAEENGKLMH 101 IA+++Q+GP+R ++A RG KS I F LW L DP +++++S ++++A+ Sbjct: 37 IADYLQHGPKRLQISAFRGVGKSWITAAFVLWVLFVDPDRKIMVISASKERADNFSIFCQ 96 Query: 102 GLIHNWPLLQYLAPDKYAGDRTSVLEFDVHWSLKGVDKSASVNCLGITSSLQGYRGDLLI 161 LI + L +L P + + R S + FDV ++ SV +GIT + G R L++ Sbjct: 97 KLILDIEWLSHLRP-RDSDQRWSRISFDV--GPAKPHQAPSVKSVGITGQMTGSRAHLMV 153 Query: 162 PDDIETTKNGLTATERAKLITLSKEFTSI-VADRNGRILYLGTPQTRESIYNTLPGRGFT 220 DD+E N T +R KL+ L E SI V D + RI++LGTPQ+ +IY L R + Sbjct: 154 FDDVEVPANSATDMQREKLLQLVSESESILVPDDDARIMFLGTPQSTFTIYRKLAERSYR 213 Query: 221 VRVWPGRFPKASELPKYGDALAPSILERMALLGDRCQTGRGLDGTRGWSTDPERYSEEEL 280 VWP R+P+ +L KY LAP ++ + D W R++E L Sbjct: 214 PFVWPARYPR--DLSKYEGLLAPQLVADLEK-----------DPELTWKPTDTRFNELNL 260 Query: 281 CDKELDQGPETFELQFMLNTSLSDAARQQLKLRDLIVADFSHEQVPESVFWAADPRFKID 340 ++E G F LQFML+TSLSDA + LK +DLIV E E+ W+ADPR+ Sbjct: 261 MERESAMGRSNFMLQFMLDTSLSDAEKFPLKFQDLIVTPLGAE-CAEAYAWSADPRYMRK 319 Query: 341 LPQEFPVQSVEMFRPASVHEHFAQIKSMTLFLDPAGNGGDELAFAIGGAVGPYIHVVAWG 400 + + P + E + +DP+G G DE + YI V Sbjct: 320 ELNPVGLPGDRFYGPMYIDEGIVPYSETIVSVDPSGRGTDETVAVVLSQANGYIFVRDMK 379 Query: 401 GFKGGVSEDNLDKLVQLCKDFGVKVVLVEKNMGAGTVTQLVRNHFLGIGPDGKQRLAGVG 460 F+ G S++ L +V+L K + +LVE N G G +T+L + H +G G+ Sbjct: 380 AFRDGYSDETLSDIVRLGKRYKASKLLVESNFGDGMITELFKRHISQMG-------GGMD 432 Query: 461 VDERHKTGQKELRIINTIRPVMQKHRLVLHRSAVEMDLELLKQYPLQHRDVRSGLYQMHN 520 +E + +KE RII T+ PVM +H+L++ E D + R YQM Sbjct: 433 TEEVRASARKEERIIETLEPVMNQHKLIIDPKVWEYDYSSNPDAAPEKRLEYMLGYQMSR 492 Query: 521 ITSDRGSLTKDDRLDALEGLVAELMGFLVIDEVKEQQRR 559 + ++G++ DDR+DAL V + + K+Q R Sbjct: 493 MCREKGAVKHDDRVDALSQGVQYYVDAVAQSAFKQQALR 531 >gi|7204|lcl|protein:vir:100065 Length: 577 # NCBI annotation: DNA maturase beta subunit # Family: family:all:697 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214228;genbank:gi:61806451;genbank:GeneID :3294745 Length = 577 Score = 249 bits (636), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 168/547 (30%), Positives = 276/547 (50%), Gaps = 29/547 (5%) Query: 34 SMTWMQEDIAEFMQYGPQRSMVAAQRGEAKSTIACLFGLWNLVQDPTHRVVLVSGAQDKA 93 S T Q IA+++Q GP+R + A RG KS I F LW L D +++++S ++++A Sbjct: 27 SPTRAQYAIADYLQSGPKRLQIQAFRGVGKSWITGAFVLWTLFNDAEKKIMIISASKERA 86 Query: 94 EENGKLMHGLIHNWPLLQYLAPDKYAGDRTSVLEFDVHWSLKGVDKSASVNCLGITSSLQ 153 + + LI P L++L P K R S + FDV L ++ SV +GIT L Sbjct: 87 DNMSIFLQKLIIETPWLKHLRP-KSDDARWSRISFDV---LCSPHQAPSVKSVGITGQLT 142 Query: 154 GYRGDLLIPDDIETTKNGLTATERAKLITLSKEFTSIVADRN-GRILYLGTPQTRESIYN 212 G R DL+I DDIE N +T R KL+ L E SI+ ++ RI+YLGTPQT ++Y Sbjct: 143 GSRADLMILDDIEVPGNSMTELMREKLLQLCTEAESILTPKDDSRIMYLGTPQTTFTVYR 202 Query: 213 TLPGRGFTVRVWPGRFPKASELPKYGDALAPSILERMALLGDRCQTGRGLDGTRGWSTDP 272 L R + VWP R+PK ++ Y +AP + E + G + G TDP Sbjct: 203 KLAERAYRPFVWPARYPK--DITPYEGLIAPQLQEDI---------DNGAES--GTVTDP 249 Query: 273 ERYSEEELCDKELDQGPETFELQFMLNTSLSDAARQQLKLRDLIVADFSHEQVPESVFWA 332 +R+ +++L +E G F LQFML+T+LSDA + LK+ DL++ + + P++V W Sbjct: 250 DRFDDDDLQQRESAMGRSNFMLQFMLDTTLSDAEKFPLKMADLVITSVNPTEAPDNVIWC 309 Query: 333 ADPRFKIDLPQEFPVQSVEMFRPASVHEHFAQIKSMTLFLDPAGNGGDELAFAIGGAVGP 392 +DP+ I + + P + + + +DP+G G DE A Sbjct: 310 SDPQNIIKDAPTVGLPGDYFYSPMQLQGEWTPYQETICSVDPSGRGTDETAACYLSQKNG 369 Query: 393 YIHVVAWGGFKGGVSEDNLDKLVQLCKDFGVKVVLVEKNMGAGTVTQLVRNHFLGIGPDG 452 ++++ ++ G S+ L +++ CK + ++VE N G G V++L + H Sbjct: 370 FLYLHEMRAYRDGYSDATLLDILKGCKKYNATTLVVETNFGDGIVSELFKKHL------- 422 Query: 453 KQRLAGVGVDERHKTGQKELRIINTIRPVMQKHRLVLHRSAVEMDLELLKQYPLQHRDVR 512 +Q + VDE +KE RII+++ PV+ +HRL++ R ++ D K P + R + Sbjct: 423 QQTKQAIFVDEVRANVRKEDRIIDSLEPVLNQHRLIVDRGVIDWDYSSNKDCPPESRLLY 482 Query: 513 SGLYQMHNITSDRGSLTKDDRLDALEGLVAELMGFLVI---DEVKEQQRRD-AAVVQEFL 568 YQM + + ++ DDRLD L V L I +++ ++R + ++Q FL Sbjct: 483 MLFYQMSRMCRMKFAVKHDDRLDCLAQGVKYFTDSLSISAQEQINLRKREEWEDILQGFL 542 Query: 569 RNPMGTG 575 +P + Sbjct: 543 DDPQSSA 549 >gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hypothetical protein ORF049 # Family: family:all:543 # MgeID: mge:1570 # MgeName: PA11 # Cross-refs: genbank:acc:YP_001294642;genbank:gi:149408208;genbank:Ge neID:5236998 Length = 535 Score = 46.6 bits (109), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 40/201 (19%), Positives = 84/201 (41%), Gaps = 22/201 (10%) Query: 35 MTWMQEDIAEFMQYG-----PQRSMVAAQRGEAKSTIACLFGLWNLVQDPTHRVVLVSGA 89 WMQ+ + +G ++ R KS + + W + + P ++ +S Sbjct: 53 FAWMQD----YTLFGRGSDLTSNKLIMLPRAHLKSHMVATWCAWIITRHPEVTILYISAT 108 Query: 90 QDKAEEN----GKLMHGLIHNWPLLQYLAP-----DKYAGDRTSVLEFDVHWSLKGVDKS 140 AE ++ ++N +Y+ P +K++ + S+ V +G+ + Sbjct: 109 ATLAETQLYAVKNILASSVYNRYFPEYIHPQEGKREKWSSNAMSIDH--VQRKKEGI-RD 165 Query: 141 ASVNCLGITSSLQGYRGDLLIPDDIETTKNGLTATERAKLITLSKEFTSIVADRNGRILY 200 A++ G+T++ G+ D+++ DD+ +N T R + S +FTSI + G + Sbjct: 166 ATIATAGLTTNTTGWHADIIVADDLVVPENAYTEDGRESVQKKSSQFTSI-RNAGGFTMA 224 Query: 201 LGTPQTRESIYNTLPGRGFTV 221 GT IY T + + + Sbjct: 225 CGTRYHPSDIYATWRSQKYDI 245 >gi|9169|lcl|protein:vir:99234 Length: 550 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950450;genbank:gi:119953651;genbank:GeneI D:4643094 Length = 550 Score = 38.1 bits (87), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 18/174 (10%) Query: 51 QRSMVAAQRGEAKST-IACLFGLWNLVQDPTHRVVLVSGAQDKAEENGKLMHGLIHNWPL 109 Q +AA RG AKST ++ +F +W ++ H +++ A ++A + + + P Sbjct: 85 QHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPR 144 Query: 110 LQYLAPDKYAGDRTSVLEFDVHWSLKGV--DKSASVNCLGITSSLQG-----YRGDLLIP 162 L P R W + + A V G ++G +R DL+I Sbjct: 145 LAMDFPQGAGKGRV--------WQVGTIVTANDAKVQVFGSGKRMRGLRHGPHRPDLVIG 196 Query: 163 DDIETTKNGLTATERAKLIT-LSKEFTSI-VADRNGRILYLGTPQTRESIYNTL 214 DD+E +N + +R KL L K S+ AD ++ +GT +S+ + L Sbjct: 197 DDLENDENVRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTILHYDSVLSRL 250 >gi|3935|lcl|protein:vir:103868 Length: 551 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938233;genbank:gi:38229138;genbank:GeneID :2648183 Length = 551 Score = 37.7 bits (86), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 18/174 (10%) Query: 51 QRSMVAAQRGEAKST-IACLFGLWNLVQDPTHRVVLVSGAQDKAEENGKLMHGLIHNWPL 109 Q +AA RG AKST ++ +F +W ++ H +++ A ++A + + + P Sbjct: 85 QHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPR 144 Query: 110 LQYLAPDKYAGDRTSVLEFDVHWSLKGV--DKSASVNCLGITSSLQG-----YRGDLLIP 162 L P R W + + A V G ++G +R DL++ Sbjct: 145 LAMDFPQGAGKGRV--------WQVGTIVTANDAKVQVFGSGKRMRGLRHGPHRPDLVVG 196 Query: 163 DDIETTKNGLTATERAKLIT-LSKEFTSI-VADRNGRILYLGTPQTRESIYNTL 214 DD+E +N + +R KL L K S+ AD ++ +GT +S+ + L Sbjct: 197 DDLENDENVRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTILHYDSVLSRL 250 >gi|12711|lcl|protein:vir:80169 Length: 565 # NCBI annotation: terminase # Family: family:all:543 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285801;genbank:gi:148747835;genbank:Ge neID:5220445 Length = 565 Score = 37.7 bits (86), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/188 (21%), Positives = 82/188 (43%), Gaps = 36/188 (19%) Query: 51 QRSMVAAQRGEAKSTI-ACLFGLWNLVQDPTHRVVLVSGAQDKAE----------ENGKL 99 +R +V A RG KST+ + L+ LW + ++P RV++ + + + E+ L Sbjct: 57 RRRLVLAPRGHLKSTVCSVLYVLWRIYRNPDIRVLVGTNLKRLSRAFIRELRQYFEDTWL 116 Query: 100 MHGLIHNWPLLQ-YLAPDKYAGDRT------SVLEFD-----------VHWSLKG----- 136 + + P ++ L P A DR + +++D + WS++ Sbjct: 117 QQNVWNVRPHIEGALVPALSASDRRKRNSQRNNVDYDEALATLTDDTKLIWSMEALQVIR 176 Query: 137 --VDKSASVNCLGITSSLQGYRGDLLIPDDIETTKNGLTATERAKLITLSKEFTSIVADR 194 V K +V + I +++ G DLLI DDI +N T + ++ +++ S++ R Sbjct: 177 PTVMKEPTVQTVSIGTTVTGDHYDLLILDDIVDFENSKTEDKAENILEWTRDLESVLDPR 236 Query: 195 NGRILYLG 202 + + Sbjct: 237 QEHVYHYN 244 >gi|15319|lcl|protein:vir:3140 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:64 # MgeName: VpV262 # Cross-refs: genbank:acc:NP_640322;genbank:gi:21234401;genbank:GeneID :956064 Length = 535 Score = 33.9 bits (76), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 139 KSASVNCLGITSSLQGYRGDLLIPDDIETTKNGLTATERAKLITLSKEFTSIVADRNGRI 198 + +V G+ S+ G ++++ DD+ KN LT T R K+ + +SI+ +G Sbjct: 157 RDPTVLATGLDSNNIGAHCNIMVKDDVVIDKNSLTETARQKVEAKAGHLSSILT-TDGME 215 Query: 199 LYLGTPQTRESIYNTLPGRGFTVRVWPG 226 +GT + Y TL T VW G Sbjct: 216 FCVGTRYHPKDHYQTLI--DMTEEVWEG 241 >gi|7770|lcl|protein:vir:96410 Length: 536 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1616 # MgeName: 119X # Cross-refs: genbank:acc:YP_001218809;genbank:gi:147917326;genbank:Ge neID:5142613 Length = 536 Score = 29.3 bits (64), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 7/64 (10%) Query: 156 RGDLLIPDDIETTKNGLTATERAKLI-----TLSKEFTSIVADRNGRILYLGTPQTRESI 210 R DL++ DD++T + L+ + A L+ TL K + ++R RI+YLG + I Sbjct: 205 RPDLIVCDDVQTRECALSEVQNAALLEWFTATLVKCIDNYGSNR--RIIYLGNMYPGDCI 262 Query: 211 YNTL 214 L Sbjct: 263 LQML 266 >gi|8062|lcl|protein:vir:103374 Length: 536 # NCBI annotation: putative head assembly cofactor # Family: family:all:543 # MgeID: mge:1621 # MgeName: PaP2 # Cross-refs: genbank:acc:YP_024735;genbank:gi:48697077;genbank:GeneID :2846042 Length = 536 Score = 29.3 bits (64), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 7/64 (10%) Query: 156 RGDLLIPDDIETTKNGLTATERAKLI-----TLSKEFTSIVADRNGRILYLGTPQTRESI 210 R DL++ DD++T + L+ + A L+ TL K + ++R RI+YLG + I Sbjct: 205 RPDLIVCDDVQTRECALSEVQNAALLEWFTATLVKCIDNYGSNR--RIIYLGNMYPGDCI 262 Query: 211 YNTL 214 L Sbjct: 263 LQML 266 >gi|4089|lcl|protein:vir:94598 Length: 581 # NCBI annotation: PfWMP4_40 # Family: family:all:543 # MgeID: mge:1525 # MgeName: Pf-WMP4 # Cross-refs: genbank:acc:YP_762670;genbank:gi:115304378;genbank:GeneI D:5142298 Length = 581 Score = 28.1 bits (61), Expect = 0.33, Method: Compositional matrix adjust. Identities = 11/45 (24%), Positives = 24/45 (53%) Query: 50 PQRSMVAAQRGEAKSTIACLFGLWNLVQDPTHRVVLVSGAQDKAE 94 P ++ RG KST+ + +W + ++P R++ S ++ +E Sbjct: 86 PTNRLLQMPRGHLKSTLTVGYIMWRIYRNPNIRMLHASNIRELSE 130 >gi|291|lcl|protein:vir:3608 Length: 462 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112694;genbank:gi:13786562;genbank:GeneID :921033 Length = 462 Score = 26.2 bits (56), Expect = 1.1, Method: Compositional matrix adjust. Identities = 11/29 (37%), Positives = 17/29 (58%) Query: 176 ERAKLITLSKEFTSIVADRNGRILYLGTP 204 +RA L+T+ +EF S + D +L L P Sbjct: 32 DRAYLVTMCEEFQSFLNDNEHDVLVLNLP 60 >gi|11995|lcl|protein:vir:79222 Length: 591 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469154;genbank:gi:157834997;genbank:Ge neID:5648803 Length = 591 Score = 25.8 bits (55), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 133 SLKGVDKSASVNCLGITSSLQG-YRGDLLIPDDIETTKNGLTATERAKLITLSKEFTSIV 191 SL GV A I + G R LL+ DD+ T K + TER ++ + Sbjct: 187 SLSGVKLEAFGAEQAIRGTFHGASRPKLLLGDDLITDKEAKSPTERNNRWDWLEKAIDYL 246 Query: 192 ADRNGRILYLGT 203 +G + YLG Sbjct: 247 GPPDGSVKYLGV 258 >gi|13633|lcl|protein:vir:3963 Length: 462 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663671;genbank:gi:21716108;genbank:GeneID :951204 Length = 462 Score = 25.4 bits (54), Expect = 1.7, Method: Compositional matrix adjust. Identities = 11/29 (37%), Positives = 17/29 (58%) Query: 176 ERAKLITLSKEFTSIVADRNGRILYLGTP 204 +RA L+T+ +EF S + D +L L P Sbjct: 32 DRAYLVTMCEEFQSFLNDDEHDVLVLNLP 60 >gi|12256|lcl|protein:vir:79447 Length: 485 # NCBI annotation: phage terminase large subunit # Family: family:all:147 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468054;genbank:gi:157265496;genbank:G eneID:5600564 Length = 485 Score = 25.4 bits (54), Expect = 2.2, Method: Compositional matrix adjust. Identities = 10/26 (38%), Positives = 13/26 (50%) Query: 44 EFMQYGPQRSMVAAQRGEAKSTIACL 69 E + Y P +A R AK +ACL Sbjct: 12 ELLGYKPHHVQLAIHRSTAKRRVACL 37 >gi|10766|lcl|protein:vir:78016 Length: 485 # NCBI annotation: terminase large subunit # Family: family:all:147 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467938;genbank:gi:157265379;genbank:G eneID:5600506 Length = 485 Score = 25.4 bits (54), Expect = 2.2, Method: Compositional matrix adjust. Identities = 10/26 (38%), Positives = 13/26 (50%) Query: 44 EFMQYGPQRSMVAAQRGEAKSTIACL 69 E + Y P +A R AK +ACL Sbjct: 12 ELLGYKPHHVQLAIHRSTAKRRVACL 37 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.320 0.138 0.412 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 260,762 Number of Sequences: 514 Number of extensions: 12181 Number of successful extensions: 129 Number of sequences better than 100.0: 34 Number of HSP's better than 100.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 34 length of query: 595 length of database: 206,069 effective HSP length: 77 effective length of query: 518 effective length of database: 166,491 effective search space: 86242338 effective search space used: 86242338 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)