BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:79636|NCBI_annot:TsbA|genbank:acc:YP_001 285531;genbank:gi:148734514;genbank:GeneID:5219994 (220 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|12390|lcl|protein:vir:79636 Length: 220 # NCBI annotation: Ts... 459 e-132 gi|3775|lcl|protein:vir:107670 Length: 222 # NCBI annotation: pu... 327 8e-92 gi|7224|lcl|protein:vir:103277 Length: 216 # NCBI annotation: hy... 264 7e-73 gi|6571|lcl|protein:vir:104349 Length: 218 # NCBI annotation: pu... 250 1e-68 gi|19658|lcl|protein:vir:10369 Length: 210 # NCBI annotation: co... 42 8e-06 gi|9240|lcl|protein:vir:97081 Length: 210 # NCBI annotation: hyp... 41 1e-05 gi|13090|lcl|protein:vir:81065 Length: 210 # NCBI annotation: p1... 37 1e-04 gi|6897|lcl|protein:vir:106581 Length: 159 # NCBI annotation: pu... 26 0.34 gi|11728|lcl|protein:vir:78939 Length: 601 # NCBI annotation: pu... 23 2.7 gi|11523|lcl|protein:vir:78781 Length: 604 # NCBI annotation: pu... 23 3.8 gi|16780|lcl|protein:vir:2731 Length: 411 # NCBI annotation: hyp... 23 4.1 gi|13692|lcl|protein:vir:4897 Length: 411 # NCBI annotation: gp4... 22 5.0 gi|10775|lcl|protein:vir:77982 Length: 348 # NCBI annotation: co... 22 5.1 gi|12265|lcl|protein:vir:79424 Length: 348 # NCBI annotation: co... 22 5.1 gi|26461|lcl|protein:vir:573 Length: 589 # NCBI annotation: unkn... 22 5.3 >gi|12390|lcl|protein:vir:79636 Length: 220 # NCBI annotation: TsbA # Family: family:all:47 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285531;genbank:gi:148734514;genbank:Ge neID:5219994 Length = 220 Score = 459 bits (1182), Expect = e-132, Method: Compositional matrix adjust. Identities = 220/220 (100%), Positives = 220/220 (100%) Query: 1 MHLPNGAQIFIENTRAQAVSATNVSNATKPEFTLESGGDAFNKGDYIIVTASSWGKLLDR 60 MHLPNGAQIFIENTRAQAVSATNVSNATKPEFTLESGGDAFNKGDYIIVTASSWGKLLDR Sbjct: 1 MHLPNGAQIFIENTRAQAVSATNVSNATKPEFTLESGGDAFNKGDYIIVTASSWGKLLDR 60 Query: 61 VLRVTEAESTKVTVEGIDTTDTNVFPAGSVTASFAKINGWTEIPCVQDLGQDGGEQQYYN 120 VLRVTEAESTKVTVEGIDTTDTNVFPAGSVTASFAKINGWTEIPCVQDLGQDGGEQQYYN Sbjct: 61 VLRVTEAESTKVTVEGIDTTDTNVFPAGSVTASFAKINGWTEIPCVQDLGQDGGEQQYYN 120 Query: 121 YQCLSDDQEQQLPTYKSAVSLTYTFAHEYDNPIYPLLRKADESGDVKALRMYVPKAKEMR 180 YQCLSDDQEQQLPTYKSAVSLTYTFAHEYDNPIYPLLRKADESGDVKALRMYVPKAKEMR Sbjct: 121 YQCLSDDQEQQLPTYKSAVSLTYTFAHEYDNPIYPLLRKADESGDVKALRMYVPKAKEMR 180 Query: 181 LWAGVLSFNEIPQTAVNEMETVSLSVSLKGRFTFLPANQD 220 LWAGVLSFNEIPQTAVNEMETVSLSVSLKGRFTFLPANQD Sbjct: 181 LWAGVLSFNEIPQTAVNEMETVSLSVSLKGRFTFLPANQD 220 >gi|3775|lcl|protein:vir:107670 Length: 222 # NCBI annotation: putative major tail protein # Family: family:all:47 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003904;genbank:gi:45686320;genbank:GeneID :2773010 Length = 222 Score = 327 bits (837), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 151/215 (70%), Positives = 178/215 (82%), Gaps = 2/215 (0%) Query: 1 MHLPNGAQIFIENTRAQAVSATNVSNATKPEFTLESGGDAFNKGDYIIVTASSWGKLLDR 60 MHLPNGAQIF+E +R V AT ++NA P T+ S GD KGDY+IVT S+W K++ R Sbjct: 1 MHLPNGAQIFVETSRGVEVEATAITNAENPVATVASKGD-LAKGDYVIVTQSTWAKMVSR 59 Query: 61 VLRVTEAESTKVTVEGIDTTDTNVFPAGSVTASFAKINGWTEIPCVQDLGQDGGEQQYYN 120 VL VT+A+ T +T+ GIDT+DT VFPAG T SFAKI GWTEIPCVQ++GQDGGEQQYY Sbjct: 60 VLIVTDAQETSITLAGIDTSDTLVFPAGG-TMSFAKITGWTEIPCVQEIGQDGGEQQYYT 118 Query: 121 YQCLSDDQEQQLPTYKSAVSLTYTFAHEYDNPIYPLLRKADESGDVKALRMYVPKAKEMR 180 YQCLSDD+EQQ+PT+KSAVSLTYTFAHE+DNPIYP+LRK D SG V A+RMYVPKA EMR Sbjct: 119 YQCLSDDKEQQIPTFKSAVSLTYTFAHEFDNPIYPILRKLDSSGQVTAVRMYVPKASEMR 178 Query: 181 LWAGVLSFNEIPQTAVNEMETVSLSVSLKGRFTFL 215 +WAG+LSFN+IP T VNEMETV L+VSLKG FTF+ Sbjct: 179 MWAGILSFNDIPSTQVNEMETVELAVSLKGDFTFI 213 >gi|7224|lcl|protein:vir:103277 Length: 216 # NCBI annotation: hypothetical protein # Family: family:all:47 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277457;genbank:gi:71834099;genbank:GeneID :3562388 Length = 216 Score = 264 bits (674), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 119/216 (55%), Positives = 165/216 (76%), Gaps = 2/216 (0%) Query: 2 HLPNGAQIFIENTRAQAVSATNVSNATKPEFTLESGGDAFNKGDYIIVTASSWGKLLDRV 61 HL NG QIF++ +++++V+ T ++NA +P T++ F GD+I+V +SSW KL ++ Sbjct: 3 HLSNGTQIFLQGSKSESVAVTAITNAAQPVMTVDDAS-TFAAGDFIVVESSSWSKLSEKQ 61 Query: 62 LRVTEAESTKVTVEGIDTTDTNVFPAGSVTASFAKINGWTEIPCVQDLGQDGGEQQYYNY 121 LRV + +T +TVEGIDTTD FPAG TAS K+ W E+PCVQD+ DGGEQQ+ Y Sbjct: 62 LRVVTSTATTITVEGIDTTDPLQFPAGG-TASIYKVLTWYEMPCVQDVSTDGGEQQFVTY 120 Query: 122 QCLSDDQEQQLPTYKSAVSLTYTFAHEYDNPIYPLLRKADESGDVKALRMYVPKAKEMRL 181 QCL+DD+EQQ+PTYKSAV+ TYTFAHE+ NPIYP+LR DESG + A+R YVPKA E+RL Sbjct: 121 QCLADDREQQIPTYKSAVNTTYTFAHEFTNPIYPVLRNYDESGALIAIRAYVPKAGEVRL 180 Query: 182 WAGVLSFNEIPQTAVNEMETVSLSVSLKGRFTFLPA 217 W G ++FNE P +VNE+ETVS++++++GR++FL A Sbjct: 181 WTGTIAFNETPNVSVNEIETVSVAITVRGRYSFLAA 216 >gi|6571|lcl|protein:vir:104349 Length: 218 # NCBI annotation: putative major tail protein # Family: family:all:47 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398977;genbank:gi:81343961;genbank:GeneID :3778881 Length = 218 Score = 250 bits (638), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 114/216 (52%), Positives = 156/216 (72%), Gaps = 2/216 (0%) Query: 2 HLPNGAQIFIENTRAQAVSATNVSNATKPEFTLESGGDAFNKGDYIIVTASSWGKLLDRV 61 HL NG Q+ +E +R A++ T +SNA P T++ GDY++ TAS+ L D+ Sbjct: 3 HLSNGTQVLVEGSRGDAIAVTAISNAASPVLTVDDA-SGIVVGDYLLFTASASTLLADKQ 61 Query: 62 LRVTEAESTKVTVEGIDTTDTNVFPAGSVTASFAKINGWTEIPCVQDLGQDGGEQQYYNY 121 +RVT T VTVEGIDT+ T FPAG +T KI W E+PCVQD+ DGGEQQ+ N+ Sbjct: 62 VRVTAVSGTSVTVEGIDTSSTTKFPAG-LTGEVVKILSWFEVPCVQDVSTDGGEQQFVNF 120 Query: 122 QCLSDDQEQQLPTYKSAVSLTYTFAHEYDNPIYPLLRKADESGDVKALRMYVPKAKEMRL 181 QCLSDD+EQ++PTYKSAV+ T+TFAHEY NP+YP+LR DESG V A+R++VP+A+EMRL Sbjct: 121 QCLSDDREQKIPTYKSAVTNTFTFAHEYTNPVYPVLRDYDESGQVVAIRLFVPRAQEMRL 180 Query: 182 WAGVLSFNEIPQTAVNEMETVSLSVSLKGRFTFLPA 217 +G ++FN+ P VNE+ETVS++VS++GR + + A Sbjct: 181 QSGTIAFNDTPTIGVNEIETVSIAVSIRGRLSSVAA 216 >gi|19658|lcl|protein:vir:10369 Length: 210 # NCBI annotation: conserved phage protein # Family: family:all:47 # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858961;genbank:gi:32128426;genbank:GeneID :2648380 Length = 210 Score = 41.6 bits (96), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 50/211 (23%), Positives = 83/211 (39%), Gaps = 18/211 (8%) Query: 7 AQIFIENTRAQAVSATNVSNATKPEFTLESGGDAFNKGDYIIVTASSWGKLLDRVLRVTE 66 A+I ++ A++A N S AT G + GD ++++A+ L+ V Sbjct: 14 AEILSTSSTVAAITAANPSVAT---------GTTADVGDVVVLSAA-GAPFLNNTASVVG 63 Query: 67 AESTKVTVEGIDTTDTNVFPAGSVTASFAKINGWTEIPCVQDLGQDGGEQQYYNYQCLSD 126 A ST + V+G T+ S + +T + Q G EQ + L D Sbjct: 64 AGSTLLGVDGRRLAGTS-----SGVVRLTDVGAFTNFAQTIGVSQYGNEQAFAQVNFLED 118 Query: 127 DQEQQL--PTYKSAVSLTYTFAHEYDNPIYPLLRKADESGDVKALRMYVPKAKEMRLWAG 184 +QL PT S + +T FA++ D + + + + LR +P L Sbjct: 119 SSGRQLSVPTTISPLVITLRFAYDPDATYFDAAKSVSDRNALVVLRRQLPNGDRF-LNVA 177 Query: 185 VLSFNEIPQTAVNEMETVSLSVSLKGRFTFL 215 ++FN+ A N VS S G T + Sbjct: 178 FMTFNDSVSVAENAPMEVSAVFSCVGPTTLV 208 >gi|9240|lcl|protein:vir:97081 Length: 210 # NCBI annotation: hypothetical protein # Family: family:all:47 # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453570;genbank:gi:84662605;genbank:GeneID :5142496 Length = 210 Score = 40.8 bits (94), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/211 (23%), Positives = 83/211 (39%), Gaps = 18/211 (8%) Query: 7 AQIFIENTRAQAVSATNVSNATKPEFTLESGGDAFNKGDYIIVTASSWGKLLDRVLRVTE 66 A+I ++ A++A N S AT G + GD ++++A+ L+ V Sbjct: 14 AEILSTSSTVAAITAANPSVAT---------GTTADVGDVVVLSAA-GAPYLNNTATVVG 63 Query: 67 AESTKVTVEGIDTTDTNVFPAGSVTASFAKINGWTEIPCVQDLGQDGGEQQYYNYQCLSD 126 A ST + V+G T+ S + +T + Q G EQ + L D Sbjct: 64 AGSTLLGVDGRRLAGTS-----SGVVRLTDVGAFTNFSQTIGVSQSGNEQAFAQVNFLED 118 Query: 127 DQEQQL--PTYKSAVSLTYTFAHEYDNPIYPLLRKADESGDVKALRMYVPKAKEMRLWAG 184 +QL PT S + +T FA++ D + + + + LR +P + Sbjct: 119 SSGRQLSVPTTISPLVITLRFAYDPDASYFDAAKSVSDRNALVVLRRQLPNGDRF-MNVA 177 Query: 185 VLSFNEIPQTAVNEMETVSLSVSLKGRFTFL 215 ++FN+ A N VS S G T + Sbjct: 178 FMTFNDSVSVAENAPMEVSAVFSCVGPTTLV 208 >gi|13090|lcl|protein:vir:81065 Length: 210 # NCBI annotation: p14 # Family: family:all:47 # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285684;genbank:gi:148727192;genbank:Ge neID:5247110 Length = 210 Score = 37.4 bits (85), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 18/211 (8%) Query: 7 AQIFIENTRAQAVSATNVSNATKPEFTLESGGDAFNKGDYIIVTASSWGKLLDRVLRVTE 66 A+I ++ A++A N S AT G + GD ++++A+ L+ V Sbjct: 14 AEILSTSSTVAAITAANPSVAT---------GTTADVGDVVVLSAA-GAPYLNNTATVVG 63 Query: 67 AESTKVTVEGIDTTDTNVFPAGSVTASFAKINGWTEIPCVQDLGQDGGEQQYYNYQCLSD 126 A ST + V+G T+ S + +T + Q G EQ + L D Sbjct: 64 AGSTLLGVDGRRLAGTS-----SGVVRLTDVGAFTNFAQTIGVSQSGNEQAFAQVNFLED 118 Query: 127 DQEQQL--PTYKSAVSLTYTFAHEYDNPIYPLLRKADESGDVKALRMYVPKAKEMRLWAG 184 +QL PT S + +T FA++ D + + + + LR +P + Sbjct: 119 ASGRQLSVPTTISPLVITLRFAYDPDASYFDAAKSVSDRNALVVLRRSLPN-NDAFYNVA 177 Query: 185 VLSFNEIPQTAVNEMETVSLSVSLKGRFTFL 215 ++FN+ A N +S S G T + Sbjct: 178 YMTFNDSVSVAENAPMEISAVFSCVGPTTLV 208 >gi|6897|lcl|protein:vir:106581 Length: 159 # NCBI annotation: putative major tail protein # Family: family:all:6477 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958590;genbank:gi:41179249;genbank:GeneID :2717117 Length = 159 Score = 26.2 bits (56), Expect = 0.34, Method: Compositional matrix adjust. Identities = 10/44 (22%), Positives = 26/44 (59%) Query: 100 WTEIPCVQDLGQDGGEQQYYNYQCLSDDQEQQLPTYKSAVSLTY 143 W EI ++ + + GG+ + + L+DD+ +Q+ ++A ++ + Sbjct: 42 WDEIADIKTIPELGGDTEKIDVTTLADDRRKQIEGIQNASNVQF 85 >gi|11728|lcl|protein:vir:78939 Length: 601 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:1860 # MgeName: LKD16 # Cross-refs: genbank:acc:YP_001522835;genbank:gi:158345070;genbank:Ge neID:5687429 Length = 601 Score = 23.1 bits (48), Expect = 2.7, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 7/76 (9%) Query: 57 LLDRVLRVTEAESTKVTVEGIDTTDTNVFPAGSVTASFAKINGWTEIPCVQDLGQDGGEQ 116 +L+R+ R+ E T +G+D T A + N I D G +G + Sbjct: 243 ILERIARLEERGHNPRTGKGLDGTR-------GWAADPQRYNEEDLIDKELDQGAEGFQL 295 Query: 117 QYYNYQCLSDDQEQQL 132 QY L+D+Q QL Sbjct: 296 QYMLDTSLADEQRMQL 311 >gi|11523|lcl|protein:vir:78781 Length: 604 # NCBI annotation: putative terminase large subunit # Family: family:all:169 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285645;genbank:gi:148727151;genbank:Ge neID:5220131 Length = 604 Score = 22.7 bits (47), Expect = 3.8, Method: Compositional matrix adjust. Identities = 10/16 (62%), Positives = 11/16 (68%) Query: 3 LPNGAQIFIENTRAQA 18 L G QIF+ TRAQA Sbjct: 199 LTGGNQIFLSATRAQA 214 >gi|16780|lcl|protein:vir:2731 Length: 411 # NCBI annotation: hypothetical protein # Family: family:all:54 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695104;genbank:gi:23455873;genbank:GeneID :955606 Length = 411 Score = 22.7 bits (47), Expect = 4.1, Method: Compositional matrix adjust. Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 3/38 (7%) Query: 65 TEAESTKVTVEGIDTTDTNVFPAGSVTASFAKINGWTE 102 T S + EG+D N + V A F +I+ W E Sbjct: 255 THYGSIVIVGEGVDN---NFYLVDGVAAQFKEIDWWVE 289 >gi|13692|lcl|protein:vir:4897 Length: 411 # NCBI annotation: gp411 # Family: family:all:54 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056675;genbank:gi:9635008;genbank:GeneID: 1262679 Length = 411 Score = 22.3 bits (46), Expect = 5.0, Method: Compositional matrix adjust. Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 3/38 (7%) Query: 65 TEAESTKVTVEGIDTTDTNVFPAGSVTASFAKINGWTE 102 T S + EG+D N + V A F +I+ W E Sbjct: 255 THYGSIVIVGEGVDN---NFYLVDGVRAQFKEIDWWVE 289 >gi|10775|lcl|protein:vir:77982 Length: 348 # NCBI annotation: conserved hypothetical protein # Family: family:all:11979 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467947;genbank:gi:157265388;genbank:Ge neID:5600472 Length = 348 Score = 22.3 bits (46), Expect = 5.1, Method: Compositional matrix adjust. Identities = 10/27 (37%), Positives = 14/27 (51%) Query: 92 ASFAKINGWTEIPCVQDLGQDGGEQQY 118 A+F +NG P +G DG E +Y Sbjct: 104 ATFTLVNGGVLTPFTAFVGFDGPEGKY 130 >gi|12265|lcl|protein:vir:79424 Length: 348 # NCBI annotation: conserved hypothetical protein # Family: family:all:11979 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468063;genbank:gi:157265505;genbank:Ge neID:5600541 Length = 348 Score = 22.3 bits (46), Expect = 5.1, Method: Compositional matrix adjust. Identities = 10/27 (37%), Positives = 14/27 (51%) Query: 92 ASFAKINGWTEIPCVQDLGQDGGEQQY 118 A+F +NG P +G DG E +Y Sbjct: 104 ATFTLVNGGVLTPFTAFVGFDGPEGKY 130 >gi|26461|lcl|protein:vir:573 Length: 589 # NCBI annotation: unknown # Family: family:all:4926 # MgeID: mge:13 # MgeName: SPBc2 # Cross-refs: genbank:acc:NP_046608;genbank:gi:9630181;genbank:GeneID: 1261423 Length = 589 Score = 22.3 bits (46), Expect = 5.3, Method: Compositional matrix adjust. Identities = 12/54 (22%), Positives = 29/54 (53%), Gaps = 2/54 (3%) Query: 116 QQYYNYQCLSDDQEQQLPTYKSAVSLTYTFA--HEYDNPIYPLLRKADESGDVK 167 ++Y + C++D++ TY++A + Y+ + ++ I LL+ + G +K Sbjct: 435 KEYEPFSCINDERMAARCTYQNAEKVIYSIKGNAQLNSEIAVLLKDGFKRGKIK 488 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.314 0.130 0.375 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,367 Number of Sequences: 514 Number of extensions: 4260 Number of successful extensions: 29 Number of sequences better than 100.0: 18 Number of HSP's better than 100.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 19 length of query: 220 length of database: 206,069 effective HSP length: 68 effective length of query: 152 effective length of database: 171,117 effective search space: 26009784 effective search space used: 26009784 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 35 (18.1 bits)