Query lcl|Aclame:protein:vir:99232|NCBI_annot:putative portal protein|genbank:acc:YP_950451;genbank:gi:119953652;genbank:GeneID:4643092 Match_columns 526 No_of_seqs 198 out of 431 Neff 8.2 Searched_HMMs 1612 Date Sun Dec 1 22:48:33 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_44 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_44_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:79233 Length: 526 100.0 3E-173 2E-176 966.7 60.1 526 1-526 1-526 (526) 2 protein:vir:99232 Length: 526 100.0 3E-172 2E-175 960.6 60.5 526 1-526 1-526 (526) 3 protein:vir:103860 Length: 528 100.0 9E-170 5E-173 947.4 60.0 526 1-526 1-528 (528) 4 protein:vir:1986 Length: 512 # 100.0 1E-161 9E-165 902.5 57.4 512 1-524 1-512 (512) 5 protein:vir:107880 Length: 491 100.0 1E-142 6E-146 799.1 56.1 488 1-520 2-491 (491) 6 protein:vir:79063 Length: 491 100.0 2E-141 1E-144 791.9 56.2 488 1-520 2-491 (491) 7 protein:vir:99853 Length: 488 100.0 2E-138 1E-141 776.0 55.6 481 12-526 1-484 (488) 8 protein:vir:95254 Length: 488 100.0 6E-113 4E-116 635.7 40.9 419 25-459 1-488 (488) 9 protein:vir:108215 Length: 469 100.0 1E-110 6E-114 623.6 42.5 428 1-456 1-469 (469) 10 protein:vir:79511 Length: 448 100.0 7E-108 4E-111 608.0 42.1 425 1-448 1-448 (448) 11 protein:vir:98816 Length: 446 100.0 4E-108 2E-111 609.4 36.7 391 1-412 1-446 (446) 12 protein:vir:77981 Length: 448 100.0 4E-107 3E-110 603.7 40.5 423 1-474 1-448 (448) 13 protein:vir:78161 Length: 355 100.0 1.1E-84 7E-88 480.8 33.9 331 136-480 1-355 (355) 14 protein:vir:101648 Length: 518 99.9 7E-24 4.4E-27 147.5 38.1 466 4-526 1-517 (518) 15 protein:vir:7853 Length: 518 # 99.9 1.9E-23 1.2E-26 145.2 38.5 466 4-526 1-517 (518) 16 protein:vir:79772 Length: 648 99.9 1.8E-21 1.1E-24 134.3 45.0 511 1-526 17-614 (648) 17 protein:vir:8418 Length: 409 # 99.9 6.5E-23 4E-26 142.2 36.7 398 1-447 1-409 (409) 18 protein:vir:4337 Length: 434 # 99.9 1.5E-23 9.2E-27 145.7 32.8 419 1-448 1-434 (434) 19 protein:vir:105064 Length: 421 99.9 3.7E-23 2.3E-26 143.6 34.3 406 1-456 1-421 (421) 20 protein:vir:100150 Length: 437 99.9 5.4E-23 3.4E-26 142.7 34.3 415 1-452 1-437 (437) 21 protein:vir:10362 Length: 432 99.9 4.9E-23 3E-26 142.9 33.9 416 1-452 1-432 (432) 22 protein:vir:102855 Length: 432 99.9 4.8E-23 3E-26 142.9 33.2 413 1-447 1-432 (432) 23 protein:vir:105002 Length: 432 99.9 4.8E-23 3E-26 142.9 33.2 413 1-447 1-432 (432) 24 protein:vir:107605 Length: 432 99.9 4.8E-23 3E-26 142.9 33.2 413 1-447 1-432 (432) 25 protein:vir:100249 Length: 431 99.9 1.3E-22 7.9E-26 140.6 35.5 410 1-443 1-431 (431) 26 protein:vir:93610 Length: 454 99.9 3E-22 1.9E-25 138.6 37.1 423 4-478 1-454 (454) 27 protein:vir:102727 Length: 945 99.9 1.4E-22 8.9E-26 140.3 34.8 502 1-526 34-608 (945) 28 protein:vir:1380 Length: 422 # 99.9 1.8E-22 1.1E-25 139.8 34.8 404 1-442 1-422 (422) 29 protein:vir:81072 Length: 432 99.9 1.6E-22 9.9E-26 140.1 34.3 409 1-451 1-432 (432) 30 protein:vir:97060 Length: 432 99.9 1.3E-22 8.3E-26 140.5 33.8 416 1-452 1-432 (432) 31 protein:vir:1266 Length: 416 # 99.9 3.1E-22 1.9E-25 138.5 35.5 403 3-446 1-416 (416) 32 protein:vir:3153 Length: 467 # 99.9 1.7E-21 1E-24 134.5 37.5 394 64-481 1-467 (467) 33 protein:vir:102080 Length: 429 99.9 4.3E-22 2.7E-25 137.7 34.2 410 1-447 1-429 (429) 34 protein:vir:483 Length: 413 # 99.9 1.5E-21 9.1E-25 134.8 36.7 395 12-445 1-413 (413) 35 protein:vir:102118 Length: 409 99.9 1.2E-21 7.2E-25 135.4 36.1 390 1-439 1-409 (409) 36 protein:vir:4454 Length: 414 # 99.9 2.4E-21 1.5E-24 133.6 37.3 401 5-445 1-414 (414) 37 protein:vir:189 Length: 424 # 99.9 9.4E-22 5.8E-25 135.9 35.1 403 17-441 1-424 (424) 38 protein:vir:81152 Length: 411 99.9 5.4E-22 3.3E-25 137.2 33.3 389 1-439 1-411 (411) 39 protein:vir:1884 Length: 424 # 99.9 9.5E-22 5.9E-25 135.8 34.2 402 17-441 1-424 (424) 40 protein:vir:3843 Length: 397 # 99.9 1.8E-21 1.1E-24 134.3 34.5 385 1-451 1-397 (397) 41 protein:vir:5737 Length: 419 # 99.9 1.8E-21 1.1E-24 134.3 34.2 404 6-460 1-419 (419) 42 protein:vir:4509 Length: 424 # 99.9 2.2E-21 1.3E-24 133.9 33.4 399 1-451 1-424 (424) 43 protein:vir:101647 Length: 460 99.9 2E-20 1.2E-23 128.6 37.7 406 1-448 1-460 (460) 44 protein:vir:1431 Length: 419 # 99.9 7.4E-21 4.6E-24 131.0 34.9 401 7-454 1-419 (419) 45 protein:vir:1326 Length: 457 # 99.9 5.3E-21 3.3E-24 131.8 32.3 427 1-462 1-457 (457) 46 protein:vir:94666 Length: 723 99.9 5.2E-20 3.2E-23 126.3 37.1 459 1-526 1-545 (723) 47 protein:vir:98396 Length: 441 99.9 1.9E-20 1.2E-23 128.8 33.7 416 6-450 1-441 (441) 48 protein:vir:80333 Length: 419 99.8 1.1E-20 7.1E-24 129.9 32.3 401 1-477 1-419 (419) 49 protein:vir:96980 Length: 409 99.8 3.3E-20 2E-23 127.4 34.5 399 1-444 1-409 (409) 50 protein:vir:9408 Length: 441 # 99.8 1.9E-20 1.2E-23 128.7 32.9 416 6-450 1-441 (441) 51 protein:vir:79984 Length: 441 99.8 1.9E-20 1.2E-23 128.7 32.9 416 6-450 1-441 (441) 52 protein:vir:6240 Length: 457 # 99.8 3.8E-20 2.3E-23 127.1 34.5 422 1-461 1-457 (457) 53 protein:vir:960 Length: 413 # 99.8 2.1E-19 1.3E-22 123.0 36.4 397 1-438 1-413 (413) 54 protein:vir:94426 Length: 409 99.8 1E-19 6.3E-23 124.7 34.7 400 1-444 1-409 (409) 55 protein:vir:81095 Length: 416 99.8 4E-20 2.5E-23 126.9 32.1 398 1-450 1-416 (416) 56 protein:vir:4598 Length: 416 # 99.8 4E-20 2.5E-23 126.9 32.1 398 1-450 1-416 (416) 57 protein:vir:9702 Length: 406 # 99.8 9.2E-20 5.7E-23 125.0 32.9 387 1-447 1-406 (406) 58 protein:vir:2683 Length: 412 # 99.8 2.9E-19 1.8E-22 122.2 34.9 401 1-444 1-412 (412) 59 protein:vir:95378 Length: 406 99.8 3.3E-19 2E-22 121.9 34.6 391 1-447 1-406 (406) 60 protein:vir:8317 Length: 409 # 99.8 1.9E-19 1.2E-22 123.3 32.5 376 1-419 1-409 (409) 61 protein:vir:93943 Length: 409 99.8 4.3E-19 2.7E-22 121.3 34.3 398 1-444 1-409 (409) 62 protein:vir:9359 Length: 348 # 99.8 3.2E-19 2E-22 122.0 32.0 335 85-444 1-348 (348) 63 protein:vir:3868 Length: 417 # 99.8 7.3E-19 4.5E-22 120.0 33.3 391 1-447 1-417 (417) 64 protein:vir:81218 Length: 423 99.8 6.7E-19 4.2E-22 120.2 33.1 397 1-445 1-423 (423) 65 protein:vir:100187 Length: 385 99.8 7.9E-19 4.9E-22 119.8 33.4 373 1-451 1-385 (385) 66 protein:vir:80644 Length: 551 99.8 3.5E-18 2.2E-21 116.3 36.5 452 1-487 5-551 (551) 67 protein:vir:4952 Length: 386 # 99.8 2.2E-18 1.3E-21 117.4 32.8 376 1-447 1-386 (386) 68 protein:vir:100882 Length: 383 99.8 4E-18 2.5E-21 115.9 34.1 372 1-441 1-383 (383) 69 protein:vir:63755 Length: 547 99.8 3.5E-17 2.2E-20 110.8 38.4 450 1-487 14-547 (547) 70 protein:vir:99452 Length: 651 99.8 5.6E-18 3.5E-21 115.2 33.8 451 1-526 1-577 (651) 71 protein:vir:80134 Length: 403 99.8 1.9E-17 1.2E-20 112.2 33.5 386 1-448 1-403 (403) 72 protein:vir:3989 Length: 392 # 99.8 1.2E-17 7.2E-21 113.4 32.0 377 1-441 3-392 (392) 73 protein:vir:1023 Length: 392 # 99.8 1.2E-17 7.2E-21 113.4 32.0 377 1-441 3-392 (392) 74 protein:vir:8100 Length: 466 # 99.8 2.4E-17 1.5E-20 111.7 33.5 430 1-451 1-466 (466) 75 protein:vir:80796 Length: 574 99.8 9.2E-17 5.7E-20 108.5 36.3 461 1-503 1-574 (574) 76 protein:vir:95599 Length: 563 99.8 1.8E-17 1.1E-20 112.4 31.9 449 1-487 10-563 (563) 77 protein:vir:99312 Length: 563 99.8 1.8E-17 1.1E-20 112.4 31.9 449 1-487 10-563 (563) 78 protein:vir:7407 Length: 392 # 99.8 2.3E-17 1.4E-20 111.8 32.4 377 1-441 3-392 (392) 79 protein:vir:4156 Length: 542 # 99.8 2.1E-16 1.3E-19 106.5 37.6 461 1-518 6-542 (542) 80 protein:vir:104259 Length: 403 99.8 8E-17 5E-20 108.8 35.1 374 1-447 1-403 (403) 81 protein:vir:6210 Length: 394 # 99.7 4E-17 2.5E-20 110.5 32.7 379 1-448 1-394 (394) 82 protein:vir:4854 Length: 386 # 99.7 1.5E-17 9.4E-21 112.8 29.5 377 1-447 1-386 (386) 83 protein:vir:4194 Length: 540 # 99.7 7.4E-16 4.6E-19 103.6 37.2 459 1-518 6-540 (540) 84 protein:vir:9507 Length: 395 # 99.7 1.5E-16 9.5E-20 107.3 32.6 379 5-447 1-395 (395) 85 protein:vir:101289 Length: 395 99.7 1.5E-16 9.5E-20 107.3 32.6 379 5-447 1-395 (395) 86 protein:vir:100650 Length: 395 99.7 1.5E-16 9.5E-20 107.3 32.6 379 5-447 1-395 (395) 87 protein:vir:96579 Length: 576 99.7 2.4E-15 1.5E-18 100.7 36.6 447 1-479 35-576 (576) 88 protein:vir:100691 Length: 535 99.7 6.2E-15 3.9E-18 98.5 38.8 438 1-481 13-535 (535) 89 protein:vir:4995 Length: 384 # 99.7 5.7E-17 3.5E-20 109.6 26.9 375 1-417 1-384 (384) 90 protein:vir:4828 Length: 382 # 99.7 3E-16 1.8E-19 105.7 30.1 372 1-447 1-382 (382) 91 protein:vir:95965 Length: 385 99.7 2.5E-15 1.6E-18 100.6 31.5 364 5-451 1-385 (385) 92 protein:vir:1082 Length: 359 # 99.6 3.9E-15 2.4E-18 99.6 30.7 345 1-409 1-359 (359) 93 protein:vir:9641 Length: 395 # 99.6 3.5E-15 2.1E-18 99.9 30.1 373 26-448 1-395 (395) 94 protein:vir:78310 Length: 376 99.6 1E-14 6.3E-18 97.3 31.3 357 5-433 1-376 (376) 95 protein:vir:4089 Length: 395 # 99.6 1.6E-14 1E-17 96.2 32.1 373 1-448 1-395 (395) 96 protein:vir:98643 Length: 395 99.6 5.7E-14 3.5E-17 93.2 29.5 373 26-448 1-395 (395) 97 protein:vir:94002 Length: 378 99.5 1.1E-13 6.5E-17 91.7 28.9 361 25-447 1-378 (378) 98 protein:vir:93867 Length: 378 99.5 2.8E-13 1.7E-16 89.4 29.4 360 25-447 1-378 (378) 99 protein:vir:107742 Length: 537 99.5 6.3E-12 3.9E-15 82.0 34.0 439 1-460 25-537 (537) 100 protein:vir:1661 Length: 378 # 99.5 1E-12 6.5E-16 86.3 29.7 361 25-447 1-378 (378) 101 protein:vir:80040 Length: 461 99.5 5.9E-12 3.6E-15 82.2 33.3 405 1-440 1-461 (461) 102 protein:vir:78641 Length: 278 99.5 6.7E-13 4.1E-16 87.3 27.6 266 85-374 1-278 (278) 103 protein:vir:858 Length: 378 # 99.4 3.3E-12 2E-15 83.5 30.1 358 1-447 1-378 (378) 104 protein:vir:5249 Length: 437 # 99.4 2.7E-11 1.7E-14 78.6 36.3 397 1-447 1-437 (437) 105 protein:vir:94869 Length: 378 99.3 2.1E-11 1.3E-14 79.1 29.2 360 1-447 1-378 (378) 106 protein:vir:389 Length: 530 # 99.3 1.5E-10 9.2E-14 74.5 33.5 434 1-447 3-530 (530) 107 protein:vir:94049 Length: 532 99.3 3.2E-10 2E-13 72.7 35.0 448 1-471 1-532 (532) 108 protein:vir:5691 Length: 344 # 99.2 9.3E-11 5.7E-14 75.6 26.5 324 1-377 1-344 (344) 109 protein:vir:79538 Length: 502 99.2 3.2E-10 2E-13 72.7 29.2 432 1-448 1-502 (502) 110 protein:vir:96068 Length: 765 99.2 1.8E-10 1.1E-13 74.0 26.3 507 1-526 1-625 (765) 111 protein:vir:98567 Length: 340 99.2 2.5E-10 1.5E-13 73.3 26.5 322 1-376 1-340 (340) 112 protein:vir:103971 Length: 376 99.2 4.9E-10 3E-13 71.6 28.0 337 1-381 15-376 (376) 113 protein:vir:3420 Length: 533 # 99.2 9.6E-10 6E-13 70.0 31.1 429 1-454 3-533 (533) 114 protein:vir:1150 Length: 350 # 99.2 4E-10 2.5E-13 72.1 27.2 328 1-377 1-350 (350) 115 protein:vir:267 Length: 348 # 99.2 6.7E-10 4.1E-13 70.9 28.2 327 1-384 1-348 (348) 116 protein:vir:79207 Length: 351 99.2 2.9E-10 1.8E-13 72.9 26.1 332 1-381 1-351 (351) 117 protein:vir:1236 Length: 483 # 99.1 1.7E-09 1.1E-12 68.7 33.9 412 1-447 1-483 (483) 118 protein:vir:6382 Length: 553 # 99.1 1.7E-09 1.1E-12 68.6 33.2 432 4-449 1-553 (553) 119 protein:vir:2013 Length: 344 # 99.1 4.8E-10 3E-13 71.7 25.8 327 1-377 1-344 (344) 120 protein:vir:78191 Length: 351 99.1 9.3E-10 5.8E-13 70.1 27.0 332 1-381 1-351 (351) 121 protein:vir:99563 Length: 862 99.1 2.2E-09 1.4E-12 68.0 29.9 491 1-526 39-648 (862) 122 protein:vir:4698 Length: 251 # 99.1 9.8E-11 6.1E-14 75.5 20.9 240 1-272 1-251 (251) 123 protein:vir:6058 Length: 344 # 99.1 8.2E-10 5.1E-13 70.4 25.9 326 1-377 1-344 (344) 124 protein:vir:100328 Length: 346 99.1 1.5E-09 9.1E-13 69.0 26.9 326 1-379 1-346 (346) 125 protein:vir:3780 Length: 345 # 99.1 3.3E-10 2E-13 72.6 23.0 319 1-379 1-345 (345) 126 protein:vir:104338 Length: 422 99.1 3.4E-09 2.1E-12 67.0 28.2 379 22-447 1-422 (422) 127 protein:vir:93747 Length: 472 99.1 3.7E-09 2.3E-12 66.8 32.7 412 1-447 5-472 (472) 128 protein:vir:78749 Length: 337 99.0 2.3E-09 1.4E-12 67.9 26.6 316 1-377 1-337 (337) 129 protein:vir:79647 Length: 435 99.0 4.8E-09 3E-12 66.2 29.8 386 1-431 1-435 (435) 130 protein:vir:105889 Length: 474 99.0 7.5E-09 4.7E-12 65.1 34.4 395 1-450 3-474 (474) 131 protein:vir:94101 Length: 474 99.0 7.5E-09 4.7E-12 65.1 34.4 395 1-450 3-474 (474) 132 protein:vir:3743 Length: 345 # 99.0 5.7E-09 3.5E-12 65.8 25.9 322 1-379 1-345 (345) 133 protein:vir:95542 Length: 548 99.0 9.3E-09 5.8E-12 64.6 30.3 436 1-452 1-548 (548) 134 protein:vir:79150 Length: 368 99.0 3.6E-09 2.2E-12 66.9 24.4 344 1-388 1-368 (368) 135 protein:vir:97336 Length: 492 98.9 2.2E-08 1.4E-11 62.5 32.1 414 1-447 10-492 (492) 136 protein:vir:107662 Length: 427 98.9 2.3E-08 1.4E-11 62.5 30.2 375 14-450 1-427 (427) 137 protein:vir:94805 Length: 492 98.8 3E-08 1.8E-11 61.8 32.2 412 1-451 10-492 (492) 138 protein:vir:10321 Length: 495 98.8 3E-08 1.9E-11 61.8 32.9 428 1-448 1-495 (495) 139 protein:vir:102602 Length: 456 98.8 4.1E-08 2.5E-11 61.1 28.3 397 14-442 1-456 (456) 140 protein:vir:105819 Length: 456 98.8 4.1E-08 2.5E-11 61.1 28.3 397 14-442 1-456 (456) 141 protein:vir:96738 Length: 505 98.8 4.8E-08 3E-11 60.7 30.2 429 1-451 1-505 (505) 142 protein:vir:99072 Length: 479 98.8 5.2E-08 3.2E-11 60.5 26.4 397 1-458 1-479 (479) 143 protein:vir:99522 Length: 470 98.8 5.6E-08 3.5E-11 60.3 30.7 408 1-447 1-470 (470) 144 protein:vir:97447 Length: 474 98.8 6.5E-08 4E-11 60.0 34.9 405 1-451 1-474 (474) 145 protein:vir:94498 Length: 474 98.8 6.5E-08 4E-11 60.0 34.9 405 1-451 1-474 (474) 146 protein:vir:7987 Length: 456 # 98.7 6.8E-08 4.2E-11 59.9 25.6 396 18-442 1-456 (456) 147 protein:vir:95113 Length: 474 98.7 6.8E-08 4.2E-11 59.9 35.6 412 1-451 1-474 (474) 148 protein:vir:5961 Length: 503 # 98.7 7.3E-08 4.5E-11 59.7 37.3 419 1-449 1-503 (503) 149 protein:vir:733 Length: 453 # 98.7 1E-07 6.3E-11 58.9 28.2 412 1-452 1-453 (453) 150 protein:vir:79043 Length: 479 98.7 1E-07 6.4E-11 58.9 32.2 404 4-452 1-479 (479) 151 protein:vir:106639 Length: 481 98.7 1.1E-07 6.6E-11 58.8 34.0 424 1-446 6-481 (481) 152 protein:vir:9871 Length: 429 # 98.7 1.3E-07 7.8E-11 58.4 33.3 372 40-450 1-429 (429) 153 protein:vir:98444 Length: 434 98.6 1.5E-07 9.1E-11 58.0 25.8 377 35-451 1-434 (434) 154 protein:vir:95806 Length: 440 98.6 1.6E-07 9.8E-11 57.9 30.7 398 13-448 1-440 (440) 155 protein:vir:105292 Length: 478 98.6 1.9E-07 1.2E-10 57.4 34.6 412 1-451 1-478 (478) 156 protein:vir:95899 Length: 474 98.6 2.4E-07 1.5E-10 56.9 32.2 411 1-448 1-474 (474) 157 protein:vir:96266 Length: 474 98.6 2.4E-07 1.5E-10 56.9 32.2 411 1-448 1-474 (474) 158 protein:vir:80680 Length: 441 98.5 4E-07 2.5E-10 55.7 28.4 393 17-472 1-441 (441) 159 protein:vir:107112 Length: 478 98.5 4.4E-07 2.7E-10 55.4 32.7 417 1-449 1-478 (478) 160 protein:vir:78227 Length: 480 98.5 4.9E-07 3E-10 55.2 28.7 407 1-456 1-480 (480) 161 protein:vir:2427 Length: 485 # 98.5 5.1E-07 3.1E-10 55.1 26.4 422 1-452 1-485 (485) 162 protein:vir:98853 Length: 219 98.5 1.9E-07 1.2E-10 57.4 20.1 204 161-378 1-219 (219) 163 protein:vir:78537 Length: 480 98.4 7.2E-07 4.5E-10 54.2 28.9 409 1-459 1-480 (480) 164 protein:vir:9306 Length: 511 # 98.4 8.5E-07 5.2E-10 53.9 30.2 417 1-456 1-511 (511) 165 protein:vir:103951 Length: 511 98.4 9.5E-07 5.9E-10 53.6 31.3 423 1-456 1-511 (511) 166 protein:vir:105782 Length: 449 98.4 1.1E-06 6.8E-10 53.3 33.1 399 1-434 1-449 (449) 167 protein:vir:97171 Length: 512 98.3 1.2E-06 7.3E-10 53.1 30.1 432 1-456 1-512 (512) 168 protein:vir:99781 Length: 511 98.3 1.3E-06 8E-10 52.9 30.8 422 1-453 7-511 (511) 169 protein:vir:2341 Length: 488 # 98.3 1.4E-06 8.7E-10 52.7 31.8 425 1-453 1-488 (488) 170 protein:vir:96179 Length: 468 98.3 1.4E-06 8.9E-10 52.6 34.0 403 1-442 1-468 (468) 171 protein:vir:3964 Length: 453 # 98.3 1.6E-06 9.7E-10 52.4 31.6 406 1-448 1-453 (453) 172 protein:vir:94956 Length: 452 98.2 2.1E-06 1.3E-09 51.7 31.1 386 1-436 1-452 (452) 173 protein:vir:4898 Length: 502 # 98.2 2.1E-06 1.3E-09 51.7 31.4 430 1-451 1-502 (502) 174 protein:vir:96366 Length: 511 98.2 2.2E-06 1.4E-09 51.6 32.2 423 1-456 1-511 (511) 175 protein:vir:78805 Length: 511 98.2 2.2E-06 1.4E-09 51.6 32.2 423 1-456 1-511 (511) 176 protein:vir:96240 Length: 511 98.2 2.4E-06 1.5E-09 51.4 30.6 423 1-456 1-511 (511) 177 protein:vir:102950 Length: 471 98.2 2.6E-06 1.6E-09 51.2 33.6 387 12-450 1-471 (471) 178 protein:vir:7768 Length: 484 # 98.2 3.3E-06 2E-09 50.6 29.6 427 1-454 1-484 (484) 179 protein:vir:80959 Length: 499 98.2 3.5E-06 2.2E-09 50.5 29.1 402 1-448 13-499 (499) 180 protein:vir:105461 Length: 470 98.1 4.1E-06 2.6E-09 50.1 32.3 386 12-447 1-470 (470) 181 protein:vir:99916 Length: 504 98.1 4.3E-06 2.6E-09 50.0 34.4 431 1-451 1-504 (504) 182 protein:vir:104082 Length: 485 98.1 4.4E-06 2.7E-09 50.0 28.0 417 1-449 1-485 (485) 183 protein:vir:38 Length: 496 # N 98.0 6.1E-06 3.8E-09 49.2 29.8 387 1-447 1-496 (496) 184 protein:vir:78083 Length: 537 98.0 6.1E-06 3.8E-09 49.2 38.7 415 1-454 1-537 (537) 185 protein:vir:102330 Length: 451 98.0 7.7E-06 4.8E-09 48.6 32.2 366 40-451 1-451 (451) 186 protein:vir:96839 Length: 474 98.0 8E-06 5E-09 48.5 35.5 408 1-450 1-474 (474) 187 protein:vir:2732 Length: 501 # 98.0 9.2E-06 5.7E-09 48.2 32.8 430 1-451 1-501 (501) 188 protein:vir:95149 Length: 501 97.9 1E-05 6.2E-09 48.0 28.4 400 1-447 1-501 (501) 189 protein:vir:9922 Length: 489 # 97.9 1.2E-05 7.2E-09 47.6 28.2 401 1-444 1-489 (489) 190 protein:vir:3609 Length: 452 # 97.9 1.4E-05 8.8E-09 47.2 31.4 403 1-448 1-452 (452) 191 protein:vir:94546 Length: 506 97.8 1.9E-05 1.2E-08 46.4 29.8 422 3-454 1-506 (506) 192 protein:vir:9568 Length: 410 # 97.8 2.2E-05 1.4E-08 46.1 27.4 356 17-423 1-410 (410) 193 protein:vir:96494 Length: 501 97.7 2.5E-05 1.6E-08 45.8 33.0 435 1-451 1-501 (501) 194 protein:vir:105154 Length: 525 97.7 2.8E-05 1.7E-08 45.5 22.1 433 1-468 1-525 (525) 195 protein:vir:2500 Length: 501 # 97.6 4E-05 2.5E-08 44.7 32.2 415 1-448 1-501 (501) 196 protein:vir:4223 Length: 486 # 97.6 4.2E-05 2.6E-08 44.6 28.0 419 1-448 1-486 (486) 197 protein:vir:94742 Length: 409 97.6 4.4E-05 2.7E-08 44.5 31.3 355 1-409 1-409 (409) 198 protein:vir:9751 Length: 422 # 97.5 5.5E-05 3.4E-08 44.0 26.1 367 1-424 1-422 (422) 199 protein:vir:106571 Length: 499 97.4 6.8E-05 4.2E-08 43.4 37.2 417 1-450 1-499 (499) 200 protein:vir:8184 Length: 474 # 97.4 6.9E-05 4.3E-08 43.4 30.9 418 4-446 1-474 (474) 201 protein:vir:1634 Length: 409 # 97.3 0.00012 7.2E-08 42.2 31.9 359 1-409 1-409 (409) 202 protein:vir:78907 Length: 518 97.1 0.00015 9.6E-08 41.5 28.0 398 1-440 1-518 (518) 203 protein:vir:80453 Length: 535 96.8 0.00032 2E-07 39.8 28.2 428 1-450 1-535 (535) 204 protein:vir:7430 Length: 563 # 96.7 0.00038 2.4E-07 39.3 22.7 443 1-498 1-563 (563) 205 protein:vir:101494 Length: 527 96.5 0.00061 3.8E-07 38.2 26.3 426 1-458 1-527 (527) 206 protein:vir:102239 Length: 527 96.4 0.00062 3.8E-07 38.2 26.3 426 1-458 1-527 (527) 207 protein:vir:94599 Length: 641 96.3 0.00073 4.5E-07 37.8 34.7 461 1-501 5-641 (641) 208 protein:vir:80165 Length: 651 96.3 0.00074 4.6E-07 37.8 38.6 469 5-503 1-651 (651) 209 protein:vir:5839 Length: 533 # 95.5 0.0019 1.2E-06 35.5 19.1 446 1-500 26-533 (533) 210 protein:vir:78393 Length: 489 95.4 0.0021 1.3E-06 35.3 28.7 406 4-451 1-489 (489) 211 protein:vir:103219 Length: 201 95.2 0.0026 1.6E-06 34.7 14.7 185 236-447 1-201 (201) 212 protein:vir:95014 Length: 491 94.6 0.0039 2.4E-06 33.8 29.7 407 4-441 1-491 (491) 213 protein:vir:4782 Length: 522 # 93.9 0.0061 3.8E-06 32.7 29.6 420 1-448 1-522 (522) 214 protein:vir:98883 Length: 517 93.1 0.0087 5.4E-06 31.9 31.2 417 1-447 1-517 (517) 215 protein:vir:3028 Length: 500 # 93.1 0.0087 5.4E-06 31.9 30.4 412 1-455 1-500 (500) 216 protein:vir:9815 Length: 500 # 93.1 0.0087 5.4E-06 31.9 30.4 412 1-455 1-500 (500) 217 protein:vir:79703 Length: 505 91.9 0.014 8.4E-06 30.8 29.5 393 1-438 1-505 (505) 218 protein:vir:1587 Length: 508 # 91.1 0.017 1.1E-05 30.2 33.2 409 1-441 1-508 (508) 219 protein:vir:97265 Length: 513 91.1 0.018 1.1E-05 30.2 32.6 403 1-448 1-513 (513) 220 protein:vir:106282 Length: 521 89.2 0.028 1.7E-05 29.1 25.8 420 1-431 5-521 (521) 221 protein:vir:104500 Length: 537 66.5 0.27 0.00017 23.7 26.9 430 1-449 1-537 (537) 222 protein:vir:95315 Length: 559 64.8 0.29 0.00018 23.5 14.9 443 1-500 35-559 (559) 223 protein:vir:1538 Length: 535 # 62.2 0.34 0.00021 23.2 24.3 410 1-499 1-535 (535) 224 protein:vir:3361 Length: 535 # 59.3 0.4 0.00025 22.8 25.2 430 1-499 1-535 (535) 225 protein:vir:78589 Length: 695 57.9 0.42 0.00026 22.6 26.6 474 1-526 46-609 (695) 226 protein:vir:96783 Length: 488 52.6 0.55 0.00034 22.0 26.3 394 1-424 1-488 (488) 227 protein:vir:103177 Length: 533 46.7 0.73 0.00045 21.3 27.8 438 1-457 1-533 (533) 228 protein:vir:101541 Length: 694 46.3 0.74 0.00046 21.3 27.2 477 1-526 41-608 (694) 229 protein:vir:103765 Length: 549 32.5 1.4 0.00088 19.7 14.1 424 1-481 38-549 (549) 230 protein:vir:106716 Length: 698 24.5 2.2 0.0013 18.7 26.3 472 1-526 46-612 (698) No 1 >protein:vir:79233 Length: 526 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469155;genbank:gi:157834998;genbank:GeneID:5648814 Probab=100.00 E-value=2.7e-173 Score=966.69 Aligned_cols=526 Identities=99% Similarity=1.457 Sum_probs=509.0 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |++|+|++||||+.+.++++++++++++++.++.||++||||.+|++||++|++||+++|++||++|+++|+||+|++++ T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~~~~~L~edm~e~D~~i~s~l~~ 80 (526) T protein:vir:79 1 MAQIVDVYGNPIRPQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) T ss_pred CCeeeCCCCCccCccccchhhhhhhhhhhhhcccCCCCCcCHHHHHHHHHHhhCCCHHHHHHHHHHHHhhChHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecCCeeEEeeeeeecCce Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPLAFHHRPQSW 160 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~ 160 (526) ||++|++++|.|+|+++++++++++|++|+++|.+++||+++|++|++|++|||||+||+|+.++|.|.|.++.+|||+| T Consensus 81 Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~ldA~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~ 160 (526) T protein:vir:79 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPLAFHHRPQSW 160 (526) T ss_pred HHHHHhCCCceEecCCCCChHHHHHHHHHHHHHhcccCHHHHHHHHHhhhhhcceeEEEEEeecCCceeEEEeeeecccc Confidence 99999999999999999989999999999999999999999999999999999999999999999999999999999999 Q ss_pred eEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecC Q lcl|Aclame:pro 161 FQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYP 240 (526) Q Consensus 161 f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~ 240 (526) |.|++++++.+++++++.+|+++|++|||+|+|+.++|+|||.||+|.|||+|+||++++++|+.|+||||+|++||||| T Consensus 161 F~~~~~~~~~l~~~~~~~~g~~l~~~k~iv~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~F~E~yG~P~~igky~ 240 (526) T protein:vir:79 161 FQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYP 240 (526) T ss_pred eEeccCCCcEEEecCCCCCceeecCCceEEEeecCCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCceEEEecC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCHHHHHHHHHHHHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhh Q lcl|Aclame:pro 241 PGTADEEKATLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALG 320 (526) Q Consensus 241 ~~~~~~e~~~l~~al~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~ 320 (526) ++++++++++|+++|++|++++++|||.|++|||++++++++++|++|++|||++|||+||||||||++++|++||+|+| T Consensus 241 ~~a~~~ek~~L~~av~~i~~da~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~iLGqtlTs~~~~g~~gS~a~g 320 (526) T protein:vir:79 241 PGTADEEKATLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALG 320 (526) T ss_pred CCCCHHHHHHHHHHHHHHhcCcEEEecCCceeEEeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhccccccCcchhhhhH Confidence 99999999999999999999999999999999999988888899999999999999999999999999888899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHH Q lcl|Aclame:pro 321 QVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVY 400 (526) Q Consensus 321 ~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~ 400 (526) +||++|+++++++|+++|+++||++||++|+.+||++..++.++|+|+|+..+++|++.+++++++|+++|++|+.+|++ T Consensus 321 ~vh~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~~~~e~eDl~~~a~~~~~L~~~G~~i~~~~i~ 400 (526) T protein:vir:79 321 QVHNEVRHDILASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVY 400 (526) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEeCCCCcccHHHHHHHHHHHHhCCCcCCHHHHH Confidence 99999999999999999999999999999999999988788899999999999999999999999999999999999999 Q ss_pred HHhCCCCCCccchhcccCCCcccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 401 DKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALADLPAKDMQNQANDLLAPLLEAVNRGD 480 (526) Q Consensus 401 e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~ 480 (526) ++||||.|+++++++.+.++++.++...+......+....+..+.++.+++.+.+.....+++.+++++++|.+++++|+ T Consensus 401 e~~gip~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~ 480 (526) T protein:vir:79 401 DKLGIPQPAKNEPVLRPAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALADLPAKDMQNQANDLLAPLLDAVNRGD 480 (526) T ss_pred HHhCCCCCCCchhhccccCCccccccccccccccccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Confidence 99999999999999988888777777777766666666666777788888888888888999999999999999999999 Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhHHhhhhhccC Q lcl|Aclame:pro 481 SETELLGALAEAFPDMDDSALTDALHRLLFAADTWGRLHGNLDRID 526 (526) Q Consensus 481 s~ee~~~~L~~l~~~l~~~~l~~~l~~a~~~A~l~G~~~~~~e~~d 526 (526) ||||++++|.++||+||.++|+++|++||++|+++||+++++|.+| T Consensus 481 s~ee~~~~L~~l~~~ld~~~l~~~l~~a~~~A~l~Gr~~~~~e~~~ 526 (526) T protein:vir:79 481 SETELLGALAEAFPDMDDSALTDALHRLLFAADTWGRLHGNLDRID 526 (526) T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhhhhhhcccC Confidence 9999999999999999999999999999999999999999999999 No 2 >protein:vir:99232 Length: 526 # NCBI annotation: putative portal protein # Family: family:all:313 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950451;genbank:gi:119953652;genbank:GeneID:4643092 Probab=100.00 E-value=3.5e-172 Score=960.59 Aligned_cols=526 Identities=100% Similarity=1.461 Sum_probs=510.9 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |++|||++||||+.+.++++++++++++++.|..||++||||.+|++||++|++||+++|.+||++|+++|+||+|++++ T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iLr~a~~gd~~~~~~L~e~m~e~D~~i~s~l~~ 80 (526) T protein:vir:99 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) T ss_pred CCeeECCCCCccccccccchhhhhhhhhhhhhcccCcCCCCHHHHHHHHHhhhCCCHHHHHHHHHHHHhhChHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecCCeeEEeeeeeecCce Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPLAFHHRPQSW 160 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~ 160 (526) ||++|++++|.|+|+++++++++++|++|+++|++++||+++|++|++|++|||||+||+|+.++|.|.|.++.+|||+| T Consensus 81 Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Eivw~~~~g~~~~~~l~~r~~~~ 160 (526) T protein:vir:99 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPLAFHHRPQSW 160 (526) T ss_pred HHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcccCHHHHHHHHHHhhhhcceeEEEEEeecCCceeEEEeeeecccc Confidence 99999999999999999989999999999999999999999999999999999999999999999999999999999999 Q ss_pred eEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecC Q lcl|Aclame:pro 161 FQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYP 240 (526) Q Consensus 161 f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~ 240 (526) |.|++++++.+++++++.+|+++|++|||+|+|+.++|+|||.||++.|||+|+||++++++|+.|+||||+|++||||| T Consensus 161 f~~~~~~~~~l~~~~~~~~g~~l~~~k~i~~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~ 240 (526) T protein:vir:99 161 FQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYP 240 (526) T ss_pred eeeccCCCcEEEecCCCCCceeecCCCeEEEeecCCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCceEEEecC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCHHHHHHHHHHHHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhh Q lcl|Aclame:pro 241 PGTADEEKATLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALG 320 (526) Q Consensus 241 ~~~~~~e~~~l~~al~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~ 320 (526) ++++++++++|+++|++|++++++|||.|++|||++++++++++|+++++|||++|||+||||||||++++|++||+|+| T Consensus 241 ~~a~~~ek~~L~~av~~i~~d~~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~iLGqtlTs~~~~g~~gS~a~g 320 (526) T protein:vir:99 241 PGTADEEKATLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALG 320 (526) T ss_pred CCCCHHHHHHHHHHHHHHhhCcEEEecCCceeEEeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhccccccCcchhhhHH Confidence 99999999999999999999999999999999999998888899999999999999999999999999888999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHH Q lcl|Aclame:pro 321 QVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVY 400 (526) Q Consensus 321 ~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~ 400 (526) +||++|+++++++|+++|+++||++||++|+.+||++..++.++|+|+|+..+++|++++++++++|+++|++|+.+|++ T Consensus 321 ~vh~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~~~~e~eDl~~~a~~~~~L~~~G~~i~~~~i~ 400 (526) T protein:vir:99 321 QVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVY 400 (526) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEeCCCCcccHHHHHHHHHHHHhCCCccCHHHHH Confidence 99999999999999999999999999999999999988788899999999999999999999999999999999999999 Q ss_pred HHhCCCCCCccchhcccCCCcccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 401 DKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALADLPAKDMQNQANDLLAPLLEAVNRGD 480 (526) Q Consensus 401 e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~ 480 (526) ++||||+|.++|+++.+.++++.+++..+......+....+..+.++.+++.+.+.+..++++++++++++|++++++++ T Consensus 401 e~~Gip~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~l~~i~~~l~~~~ 480 (526) T protein:vir:99 401 DKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALADLPAKDMQNQANDLLAPLLEAVNRGD 480 (526) T ss_pred HHhCCCCCCCcccccCCCCCCcccccccccccccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Confidence 99999999999999998888877777777777777777777778888999999999999999999999999999999999 Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhHHhhhhhccC Q lcl|Aclame:pro 481 SETELLGALAEAFPDMDDSALTDALHRLLFAADTWGRLHGNLDRID 526 (526) Q Consensus 481 s~ee~~~~L~~l~~~l~~~~l~~~l~~a~~~A~l~G~~~~~~e~~d 526 (526) ||||++++|.++||+||.++|+++|++||++|+++||++++.|.+| T Consensus 481 s~ee~~~~L~~l~~~ld~~~l~~~l~~a~~~A~l~Gr~~~~~e~~~ 526 (526) T protein:vir:99 481 SETELLGALAEAFPDMDDSALTDALHRLLFAADTWGRLHGNLDRID 526 (526) T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhhhhhhcccC Confidence 9999999999999999999999999999999999999999999999 No 3 >protein:vir:103860 Length: 528 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938234;genbank:gi:38229139;genbank:GeneID:2648175 Probab=100.00 E-value=8.7e-170 Score=947.42 Aligned_cols=526 Identities=78% Similarity=1.271 Sum_probs=499.6 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |++|||++||||+.+.+++|++++++++++.+..||++||||.+|++||++|++||+++|++||++|+++|+||++++++ T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~~~~~L~~~m~e~D~~i~s~l~~ 80 (528) T protein:vir:10 1 MAAIVDIYGNPLRTQQLRKQQTAHLAGLAKEFANHPAKGLTPAKLAHILIEAEQGHLQAQAELFMDMEERDAHLFAEMSK 80 (528) T ss_pred CCeeECCCCCccccccccchhhhhhhhhhhhhcccCCCCCCHHHHHHHHHhhhCCCHHHHHHHHHHHHhhChHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecCCeeEEeeeeeecCce Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPLAFHHRPQSW 160 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~ 160 (526) ||++|++++|+|+|++++++++++++++|+++|.++++|+++|.+|++|++|||||+|++|..++|.|.|+++.+|||+| T Consensus 81 Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~f~~~i~~~lda~~~G~s~~Ei~w~~~~g~~~~~~~~~r~~~~ 160 (528) T protein:vir:10 81 RKRAVLGLDWTIEPPRNASAAEKADAEYLHELLLDLEGIEDLMLDCMDGVGHGYSAIELDWSLQGREWLPQAFDHRPQSW 160 (528) T ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhCCccHHHHHHHHHhhhhhcceeEEEEEeecCCceeEEEeeeecccc Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999999 Q ss_pred eEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecC Q lcl|Aclame:pro 161 FQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYP 240 (526) Q Consensus 161 f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~ 240 (526) |.|+.++++.+++++++..|+++|++||++|+|+.++|||||.||++.|||+|+||++++++|+.|+||||+|++||||| T Consensus 161 f~~~~~~~~~l~~~~~~~~g~~l~~~k~iv~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~ 240 (528) T protein:vir:10 161 FQLNPDDQDELRLRDNSIAGEVLQPFGWIMHKPRSRSGYVARSGLFRVLAWPYLFKHYSTADLAEMLEIYGLPIRLGKYP 240 (528) T ss_pred eeeccCCCcEEeccCCCCCceeecCCCeEEEeecCCCCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCCeEEEecC Confidence 99999999999998888899999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCHHHHHHHHHHHHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhh Q lcl|Aclame:pro 241 PGTADEEKATLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALG 320 (526) Q Consensus 241 ~~~~~~e~~~l~~al~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~ 320 (526) ++++++++++|+++|++|++++++|||.|++|||++++++++++|+++++|||++|||+||||||||+.++|++||+|+| T Consensus 241 ~~a~~~ek~~L~~al~~i~~~~~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~iLGqtlTs~~~~g~~gS~Alg 320 (528) T protein:vir:10 241 PGTPDEEKVTLLRAVTGLGHAAAGIIPESMSIDFQEASKGSAEPFMAMMRWCDDSMSKAILGGTLTSQTSESGGGAYALG 320 (528) T ss_pred CCCCHHHHHHHHHHHHHHhhCcEEEecCCceeEEeecCCCChhHHHHHHHHHHHHHHHHHhhhhhhccccccccchhhhH Confidence 99999999999999999999999999999999999988888899999999999999999999999999888899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHH Q lcl|Aclame:pro 321 QVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVY 400 (526) Q Consensus 321 ~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~ 400 (526) +||++|+++++++|+++|+++||++||++||.+||++..++.++|+|+|+..+++|++++++++++|+++|++|+.+|++ T Consensus 321 ~vh~~v~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~~~~~~p~~~~~~~e~eDl~~~a~~~~~L~~~G~~i~~~~i~ 400 (528) T protein:vir:10 321 QVHNEVRHDLLAADARQLAATLSRDLLWPLLVLNRSGNLDARRAPRLVFDLKDRADLAAMATSLPPLVKLGVQVPVNWVQ 400 (528) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEecCCCcccHHHHHHHHHHHHhCCCCCCHHHHH Confidence 99999999999999999999999999999999999988777889999999999999999999999999999999999999 Q ss_pred HHhCCCCCCccchhcccCCCccccc--ccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 401 DKLGIPQPAKNEPVLRSAAQPAILS--RQHGQRVAALATIVGPRYGDQQALDKALADLPAKDMQNQANDLLAPLLEAVNR 478 (526) Q Consensus 401 e~~Glp~~~~~e~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 478 (526) ++||||.|+++|+++.+...++..+ +..+....+.+....+..+.++.+++.+.....+++++++++++++|++++++ T Consensus 401 e~~gip~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~i~~~l~~ 480 (528) T protein:vir:10 401 EQLGIPLPANGEAVLGDQAGAGIAQLSRRPGPRIAALAQVIGPRYRDQEALDQVLASLPAQDMQNQADSLVAPLLDVISR 480 (528) T ss_pred HHhCCCCCCCCcccccCCCcccccccCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 9999999999998876544333222 22333334444555556677788888888889999999999999999999999 Q ss_pred cCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhHHhhhhhccC Q lcl|Aclame:pro 479 GDSETELLGALAEAFPDMDDSALTDALHRLLFAADTWGRLHGNLDRID 526 (526) Q Consensus 479 a~s~ee~~~~L~~l~~~l~~~~l~~~l~~a~~~A~l~G~~~~~~e~~d 526 (526) ++||+|++++|.++||+||.++|+++|++||++|+++||+++..|.+| T Consensus 481 ~~s~ee~~~~L~~l~~~~d~~~l~~~l~~a~~~A~l~G~~~~~~e~~~ 528 (528) T protein:vir:10 481 GGSEAELLGALAEAFPDMDDSALADALHRLLFVADTWGRLNGTLDRID 528 (528) T ss_pred cCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhhhccccccC Confidence 999999999999999999999999999999999999999999999999 No 4 >protein:vir:1986 Length: 512 # NCBI annotation: Hypothetical protein # Family: family:all:313 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050633;genbank:gi:9633520;genbank:GeneID:2636304 Probab=100.00 E-value=1.4e-161 Score=902.46 Aligned_cols=512 Identities=45% Similarity=0.790 Sum_probs=475.1 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |++|+|++||||..+.++++++++++++++.|..||++||||.+|+.||++|++||+++|.+||++|+++|+||+|++++ T Consensus 1 m~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iL~~a~~gd~~~~~~L~~dm~~~D~hi~s~l~~ 80 (512) T protein:vir:19 1 MGRILDISGQPFDFDDEMQSRSDELAMVMKRTQEHPSSGVTPNRAAQMLRDAERGDLTAQADLAFDMEEKDTHLFSELSK 80 (512) T ss_pred CcceeCCCCCccccccccccccchhcccchhhccccccCCCHHHHHHHHHHhhCCCHHHHHHHHHHHHhhChHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecCCeeEEeeeeeecCce Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPLAFHHRPQSW 160 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~ 160 (526) ||++|++++|+|+|++++++++++++++|+++|.+++||+++|++|++|++|||||+||+|..++|.|.|.++.+|||+| T Consensus 81 Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~f~~~~~~lldA~~~G~s~~Ei~w~~~~g~~~~~~~~~r~~~~ 160 (512) T protein:vir:19 81 RRLAIQALEWRIAPARDASAQEKKDADMLNEYLHDAAWFEDALFDAGDAILKGYSMQEIEWGWLGKMRVPVALHHRDPAL 160 (512) T ss_pred HHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhhcceeeeeEeeeeCCceeeeeeeeecccc Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999999 Q ss_pred eEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecC Q lcl|Aclame:pro 161 FQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYP 240 (526) Q Consensus 161 f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~ 240 (526) |.|++++++.+++++++.+|+++|++|||+|+|+.++|+|||.||++.|||+|+||++++++|+.|+||||+|++||||| T Consensus 161 f~~~~~~~~~lr~~~~~~~G~~l~~~k~i~~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~ 240 (512) T protein:vir:19 161 FCANPDNLNELRLRDASYHGLELQPFGWFMHRAKSRTGYVGTNGLVRTLIWPFIFKNYSVRDFAEFLEIYGLPMRVGKYP 240 (512) T ss_pred ceeccCCCcEEEecCCCCCceeecCCceEEEeccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEecC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCHHHHHHHHHHHHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhh Q lcl|Aclame:pro 241 PGTADEEKATLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALG 320 (526) Q Consensus 241 ~~~~~~e~~~l~~al~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~ 320 (526) ++++++++++|+++|++|++++++|||.||+|+|++++++++++|+.+++|||++|||+||||||||+. |++||+|+| T Consensus 241 ~~a~~~ek~~L~~al~~~~~~a~~iiP~~~~ie~~ea~~~~~~~y~~li~~~d~~Isk~iLGqtlTs~~--g~~Gs~a~~ 318 (512) T protein:vir:19 241 TGSTNREKATLMQAVMDIGRRAGGIIPMGMTLDFQSAADGQSDPFMAMIGWAEKAISKAILGGTLTTEA--GDKGARSLG 318 (512) T ss_pred CCCCHHHHHHHHHHHHHHhhCcEEEecCCceEEEeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhcccc--cccchhhHH Confidence 999999999999999999999999999999999999988888999999999999999999999999975 456999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHH Q lcl|Aclame:pro 321 QVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVY 400 (526) Q Consensus 321 ~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~ 400 (526) +||++|+++++++|+++|+++||++||++|+.+||++..+..++|+|+|+..+++|++.+++.+++|+ +|++|+.+|++ T Consensus 319 ~vh~ev~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~~~~~~p~~~f~~~e~eDl~~~a~~~~~l~-~G~~i~~~~i~ 397 (512) T protein:vir:19 319 EVHDEVRREIRNADVGQLARSINRDLIYPLLALNSDSTIDINRLPGIVFDTSEAGDITALSDAIPKLA-AGMRIPVSWIQ 397 (512) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEecCCChhhHHHHHHHHHHHh-cCCCCCHHHHH Confidence 99999999999999999999999999999999999988777889999999999999999999999997 89999999999 Q ss_pred HHhCCCCCCccchhcccCCCcccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 401 DKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALADLPAKDMQNQANDLLAPLLEAVNRGD 480 (526) Q Consensus 401 e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~ 480 (526) ++||||.|.++++++.+.+.+++...... ........+.++.++.. ... ..+++..+++++++|.+++.+ . T Consensus 398 e~~Gip~~~~~e~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~d~~-~~~-~~~~~~~~~~~~~~i~~~~~~-~ 468 (512) T protein:vir:19 398 EKLHIPQPVGDEAVFTIQPVVPDNGSQKE------AALSAEDIPQEDDIDRM-GVS-PEDWQRSVDPLLKPVIFSVLK-D 468 (512) T ss_pred HHhCCCCCCCccccccCCCcccccccccc------ccccccCCCchhhHhHH-hhh-HHHHHHHHHHHHHHHHHHHHh-C Confidence 99999999999888765443332222111 11111222333444433 333 457889999999999999964 6 Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhHHhhhhhc Q lcl|Aclame:pro 481 SETELLGALAEAFPDMDDSALTDALHRLLFAADTWGRLHGNLDR 524 (526) Q Consensus 481 s~ee~~~~L~~l~~~l~~~~l~~~l~~a~~~A~l~G~~~~~~e~ 524 (526) ||||++++|.++||+||.++|+++|++||++|+++||+++.+|- T Consensus 469 s~ee~~~~L~~l~~~ld~~~l~~~l~~a~~~A~l~G~~~~~~e~ 512 (512) T protein:vir:19 469 GPEAAMNKAASLYPQMDDAELIDMLTRAIFVADIWGRLDAAADH 512 (512) T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhhhhhccC Confidence 99999999999999999999999999999999999999999999 No 5 >protein:vir:107880 Length: 491 # NCBI annotation: gp29 # Family: family:all:313 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024702;genbank:gi:48696939;genbank:GeneID:2845968 Probab=100.00 E-value=9.8e-143 Score=799.12 Aligned_cols=488 Identities=25% Similarity=0.383 Sum_probs=440.4 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) -+.|||++|+||++..++++++..++.++ .+..+|+.|+||.+++.+|+.++ |+ ..+|++|+ +|+||++++++ T Consensus 2 ~~~i~~~~g~p~~~~~~~~~~~~~ia~~~-~~~~~~~~~~~~~~~~~iLr~~~-~~----~~~y~~m~-~D~~i~s~l~~ 74 (491) T protein:vir:10 2 SKGLWVSPTEFVTFGEPDKSLSSQIATRA-RSIDFFALGMYLPNPDPVLKALG-KD----IRVYRELR-ADAHVGGCVRR 74 (491) T ss_pred CCceeCCCCCccCcccCChHHHHHHHhhh-cccccccccCCccchHHHHHhcC-CC----HHHHHHHh-hChHHHHHHHH Confidence 46899999999999999999998887655 46689999999999999999886 44 46888887 79999999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecCCeeEEeeeeeecCce Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPLAFHHRPQSW 160 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~ 160 (526) |+++|++++|+|+|++++ .+++++|+++|.++ +|++++++|++|++|||||+|++|+.++|.|.|.++.+|||+| T Consensus 75 Rk~av~~~~w~i~~~~~~----~~~~e~v~e~l~~~-~~~~~l~~~lda~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~ 149 (491) T protein:vir:10 75 RKAAVKALEWGLDRGKAK----SRVAKSIADVFADL-DLSRIVTEMLDAVLYGYQPMEITWGKVGNYIVPIDVVGKPADW 149 (491) T ss_pred HHHHHhCCCcEEecCCCC----HHHHHHHHHHHhcC-CHHHHHHHHHHhhhhcceeEEEEEeecCCeeEEEEeeeecccc Confidence 999999999999998764 35788999999886 7999999999999999999999999999999999999999999 Q ss_pred eEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecC Q lcl|Aclame:pro 161 FQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYP 240 (526) Q Consensus 161 f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~ 240 (526) |.|++++++++++++++.+|+++|++|||+|+|+++++||||.||++.|||+|+||++++++|+.|+||||+|+++|||| T Consensus 150 f~~d~~~~l~~~~~~~~~~g~~l~~~k~i~~~~~~~~~~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~ 229 (491) T protein:vir:10 150 FVYDPENQLRFRSKDHWMQGEELPARKFLVPRQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVGKHP 229 (491) T ss_pred eeeccCCceEEecCCCCCCcceecCCCEEEEEecCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecC Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCHHHHHHHHHHHHHhhcCeEEEecCCceEEEeecC--CCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhh Q lcl|Aclame:pro 241 PGTADEEKATLLRAVTGLGHAAAGIIPETMAIDFQQAA--QGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFA 318 (526) Q Consensus 241 ~~~~~~e~~~l~~al~~~~~~~~~iip~~~~ie~~~a~--~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a 318 (526) ++++++++++|+++|++|++++++|||.|++|||++++ +++.++|+++++|||++|||+||||||||+ ++||+| T Consensus 230 ~~a~~~ek~~l~~al~~~~~~a~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~iLGqtlTt~----~~gs~a 305 (491) T protein:vir:10 230 RSASDGEKNLLLDCLEDMVQDAVAVVPDDSSIEIKEAAGKTGSADVYERLLHFCRGEVSIALLGQNQTTE----ATSTRA 305 (491) T ss_pred CCCCHHHHHHHHHHHHHHhcCcEEEecCCceeEEEecCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccC----cccchh Confidence 99999999999999999999999999999999999975 355678999999999999999999999986 358999 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHH Q lcl|Aclame:pro 319 LGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAW 398 (526) Q Consensus 319 ~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~ 398 (526) +|+||++|+++++++|+++|++++| +||+++|.+||++.. +|+|+|...+ ++.+.+++++++|+++|++++.+| T Consensus 306 ~~~vh~~v~~di~~~D~~~i~~tln-~li~~l~~~N~~~~~----~p~f~~~~~~-e~~~~~a~~~~~L~~~G~~i~~~~ 379 (491) T protein:vir:10 306 SAQAGLEVTDDIRDGDKAVVSEAMN-MLIRWICDLNFDGAD----RPVFDMWEQE-QVDEIQAGRDQKLTQAGARFTPAY 379 (491) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCC----cceEEecCcC-chhHHHHHHHHHHHhCCCcCCHHH Confidence 9999999999999999999999999 599999999998643 6899997654 455889999999999999999999 Q ss_pred HHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 399 VYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALADLPAKDMQNQANDLLAPLLEAVNR 478 (526) Q Consensus 399 ~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 478 (526) ++++||||.|..+++++...++...+++ .......+.++.+++.+.....+.++.++++++++|.++|++ T Consensus 380 i~e~~Gip~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 449 (491) T protein:vir:10 380 FKRAYNLQDGDLDERPLPVSAVDTVGAA----------SFAEFEAPDQDALDAALNTLSARDLNADAQALVAPLLKRIAN 449 (491) T ss_pred HHHHhCCCCCCcCccccccCCCCCcccc----------cccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 9999999999888776543332222211 111223345566677777777889999999999999999999 Q ss_pred cCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhHHhh Q lcl|Aclame:pro 479 GDSETELLGALAEAFPDMDDSALTDALHRLLFAADTWGRLHG 520 (526) Q Consensus 479 a~s~ee~~~~L~~l~~~l~~~~l~~~l~~a~~~A~l~G~~~~ 520 (526) ++||+|++++|.++||+||.++|+++|++||++|+++||+++ T Consensus 450 ~~s~~e~~~~L~~l~~~~d~~~l~~~l~~a~~~A~l~G~~~a 491 (491) T protein:vir:10 450 GASADELLGMLAELYPSLDADALQERLARAIFVANLWGRLHA 491 (491) T ss_pred cCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhccC Confidence 999999999999999999999999999999999999999999 No 6 >protein:vir:79063 Length: 491 # NCBI annotation: gp3 # Family: family:all:313 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111203;genbank:gi:134288841;genbank:GeneID:4960737 Probab=100.00 E-value=2e-141 Score=791.94 Aligned_cols=488 Identities=25% Similarity=0.382 Sum_probs=437.8 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) -+.|||++|+||+++..+++.+.+++++++.+..|+..+++|.+ ..+|+..+ ++ ..+|++|+ +|+||++++++ T Consensus 2 ~~~i~~~~g~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~p~~-~~il~~~~-~~----~~~y~~m~-~D~~i~s~l~~ 74 (491) T protein:vir:79 2 SKGLWVSPTEFVKFGEPDKSLSSQIATRARSIDFFALGMYLPNP-DPVLKALG-KD----IRVYRELR-ADAHVGGCVRR 74 (491) T ss_pred CCeeeCCCCCcccccccchhHHHHHhhhccccccccccccCcch-hHHHhhcc-CC----HHHHHHHh-hChHHHHHHHH Confidence 46899999999999999999999999999999999999999999 56887553 45 46889998 79999999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecCCeeEEeeeeeecCce Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPLAFHHRPQSW 160 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~ 160 (526) |+++|++++|+|+|++++ .+++++++++|.++ +|+++|++|++|++|||||+|++|..++|.|.|.++.+|||+| T Consensus 75 Rk~av~~~~w~i~~~~~~----~~~a~~i~e~l~~~-~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~ 149 (491) T protein:vir:79 75 RKAAVKALEWGLDRGKAK----SRVAKSIADVFADL-DLSRIATEMLDAVLYGYQPMEITWGKVGNYIVPIDVVGKPADW 149 (491) T ss_pred HHHHHhCCCcEEecCCCC----HHHHHHHHHHHhcC-CHHHHHHHHHHhhhhcceeEEEEEeecCCeeeEEeeeeecccc Confidence 999999999999998764 35788999999887 7999999999999999999999999999999999999999999 Q ss_pred eEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecC Q lcl|Aclame:pro 161 FQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYP 240 (526) Q Consensus 161 f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~ 240 (526) |.|+++++.++++++++.+|+++|++|||+|+|+.++|||||.||++.|||+|+||++++++|+.|+||||+|++||||| T Consensus 150 f~~d~~~~l~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~~G~P~~igky~ 229 (491) T protein:vir:79 150 FVYDPENQLRFRSKEHWVQGEELPARKFLVPRQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVGKHP 229 (491) T ss_pred eeeccCCceEEeecCCCCCceeecCCCeEEEEecCCCCCcccchhHHHHHHHHHHHHhhHHHHHHHHHHcCCCeEEEecC Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCHHHHHHHHHHHHHhhcCeEEEecCCceEEEeecC--CCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhh Q lcl|Aclame:pro 241 PGTADEEKATLLRAVTGLGHAAAGIIPETMAIDFQQAA--QGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFA 318 (526) Q Consensus 241 ~~~~~~e~~~l~~al~~~~~~~~~iip~~~~ie~~~a~--~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a 318 (526) ++++++++++|+++|++|++++++|||.|++|||++++ +++.++|+++++|||++|||+||||||||+ ++||+| T Consensus 230 ~~a~~~ek~~l~~al~~~~~~a~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~iLGqtlTt~----~~gs~a 305 (491) T protein:vir:79 230 RSASDAETNLLLDRLEDMVQDAVAVIPDDSSIEIKEAAGKSGSADVYERLLHFCRGEVSIALLGQNQTTE----ATSTRA 305 (491) T ss_pred CCCCHHHHHHHHHHHHHHhcCeEEEecCCceeEEEeccCCCCChhHHHHHHHHHHHHHHHHHhhhhhccC----cccchh Confidence 99999999999999999999999999999999999975 356678999999999999999999999986 358999 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHH Q lcl|Aclame:pro 319 LGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAW 398 (526) Q Consensus 319 ~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~ 398 (526) +|+||++|+++++++|+++|+++|| +||++++.+||++.. .|+|.+...+ ++.+.+++++++|+++|++++.+| T Consensus 306 ~~~vh~~v~~~i~~~D~~~i~~tln-~li~~l~~~N~~~~~----~p~f~~~e~e-e~~~~~a~~~~~L~~~G~~i~~~~ 379 (491) T protein:vir:79 306 SAQAGLEVTDDIRDGDKAIVVEAMN-MLIRWICDLNFDGAA----RPVFDMWEQE-QVDEIQAGRDEKLTRAGARFTPAY 379 (491) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCC----cceEeecCcC-chhHHHHHHHHHHHhCCCccCHHH Confidence 9999999999999999999999999 599999999998543 4677775443 233678999999999999999999 Q ss_pred HHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 399 VYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALADLPAKDMQNQANDLLAPLLEAVNR 478 (526) Q Consensus 399 ~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 478 (526) ++++||||+|..+++++....+.+.+.+. ......+.++.++..+.......++.++++++++|.++|++ T Consensus 380 ~~e~~Gip~~~~~e~~~~~~~~~~~~~~~----------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 449 (491) T protein:vir:79 380 FKRAYNLQDGDLDERPLPVSAVDAVGAAS----------FAEFEAPDQDALDAALNALSARDLNADAQALVAPLLKRIAN 449 (491) T ss_pred HHHHhCCCCCCCCccccCcCccccccccc----------ccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 99999999999888766543332222111 11122334556677776667778999999999999999999 Q ss_pred cCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhHHhh Q lcl|Aclame:pro 479 GDSETELLGALAEAFPDMDDSALTDALHRLLFAADTWGRLHG 520 (526) Q Consensus 479 a~s~ee~~~~L~~l~~~l~~~~l~~~l~~a~~~A~l~G~~~~ 520 (526) |+|++|++++|.++||+||.++|+++|++||++|+++||+++ T Consensus 450 ~~s~~e~~~~L~~l~~~~d~~~l~~~l~~a~~~A~l~Gr~~a 491 (491) T protein:vir:79 450 GASADELLGMLAELYPSLDTDALQERLARAIFVANLWGRLHA 491 (491) T ss_pred cCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhhccC Confidence 999999999999999999999999999999999999999999 No 7 >protein:vir:99853 Length: 488 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164068;genbank:gi:56692600;genbank:GeneID:3192581 Probab=100.00 E-value=1.6e-138 Score=775.97 Aligned_cols=481 Identities=20% Similarity=0.278 Sum_probs=432.1 Q ss_pred cCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCce Q lcl|Aclame:pro 12 IRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSKRKRAILGLDWA 91 (526) Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~av~~~~w~ 91 (526) |+...+.++.+ +.++.++.++.|++.+.+|. ..+|+.+++|++. +|++|+ +|+||++++++|+++|++++|+ T Consensus 1 v~~~~l~~e~a-t~~~~~d~~~~~~~~l~~~~--~~il~~a~~g~~~----~y~~l~-~D~~i~s~l~~rk~av~~~~w~ 72 (488) T protein:vir:99 1 MEKPALGREIA-TSGDGRDITRPFISGLQVPN--DSILQRRGGNDLR----VYEEIL-SDAQVKTVWGQRQLAVVSREWK 72 (488) T ss_pred CCccchhHHHH-HHHhhhhhhccccCCCCCCC--hHHHHhhccCCHH----HHHHHh-hChHHHHHHHHHHHHHhcCCce Confidence 66666666553 56677888888877655555 5999999999985 556665 5999999999999999999999 Q ss_pred EecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecCCeeEEeeeeeecCceeEecccCCceE Q lcl|Aclame:pro 92 VEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPLAFHHRPQSWFQLNPEDQNEL 171 (526) Q Consensus 92 v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~~~~~~~~l 171 (526) |+|+++ ++++++++++|+++|.++ +|+++|++|++|++|||||+|++|.+++|.|.|.++.+|||+||.|+.++++++ T Consensus 73 i~p~~~-~~~~~~~ae~v~~~l~~~-~~~~~l~~~lda~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~d~~~~l~~ 150 (488) T protein:vir:99 73 VEAGGD-RPIDQAAAEHLEQQLQRV-GWDRVTSKMLFGVFYGYAVSELIYGRDDRYITLEAIKVRNRRRFRYDQDGGLRL 150 (488) T ss_pred EEcCCC-ChHHHHHHHHHHHHHhCC-CHHHHHHHHHhhhhhcceeEEEEEeecCCeeeEeeeeeecccceeecCCCceEE Confidence 999875 678899999999999886 799999999999999999999999999999999999999999999999999999 Q ss_pred EeccCCCCceeec-CCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCC-CCCHHHHH Q lcl|Aclame:pro 172 RLRDNSPAGEALQ-PFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPP-GTADEEKA 249 (526) Q Consensus 172 ~~~~~~~~g~~lp-~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~-~~~~~e~~ 249 (526) +++++..+|+++| +++|++|+|+.++|||||.||++.|||+|+||++++++|+.|+|+||+|++|||||+ ++++++++ T Consensus 151 ~~~~~~~~g~~lp~~~~~i~~~~~~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~~a~~~ek~ 230 (488) T protein:vir:99 151 LTPNNMFEGEPCPAPYFWHFSTGADNDDEPYGLGLAHWLYWPVFFKRNGIKFWLIFLDKFGMPTAVGRYDDKTATPEDKA 230 (488) T ss_pred eccCCCCCccccccCceEEEEeecCCCCCcccchHHHHHHHHHHHHHhhHHHHHHHHHHcCCceeeeecCCCCCCHHHHH Confidence 9888888999996 779999999999999999999999999999999999999999999999999999996 78899999 Q ss_pred HHHHHHHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHH Q lcl|Aclame:pro 250 TLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHD 329 (526) Q Consensus 250 ~l~~al~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~ 329 (526) +|+++|++|++++++|||.|++|||++++++++++|.++++|||++|||+||||||||+. ++||+|+|+||++|+++ T Consensus 231 ~l~~av~~~~~~~~~viP~~~~ie~~ea~~~~~~~~~~li~~~d~~Isk~iLGqtlts~~---~~Gs~a~~~vh~~v~~d 307 (488) T protein:vir:99 231 KLLAALHAIQTDSAIIMPAGMQAELLEAGRSGTADYKTLHDTMDATIAKVGLGQVASTQG---TPGRLGNDDLQADVRLD 307 (488) T ss_pred HHHHHHHHHhcCcEEEecCCceeEEeecCCCChHHHHHHHHHHHHHHHHHHhhhhhcccc---cccchhhHHHHHHHHHH Confidence 999999999999999999999999999988888899999999999999999999999853 45899999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhC-CCcCCHHHHHHHhCCCCC Q lcl|Aclame:pro 330 LLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNV-GLEIPSAWVYDKLGIPQP 408 (526) Q Consensus 330 ~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~-G~~v~~~~~~e~~Glp~~ 408 (526) ++++|+++|+++||++||++|+.+||++. .+|+|+|+..+++|++++++++++|+++ |++++++|++++||||++ T Consensus 308 ~~~aDa~~i~~tln~~li~~l~~~N~~~~----~~p~~~~~~~e~edl~~~a~~~~~l~~~~G~~i~~~~i~e~~Gip~~ 383 (488) T protein:vir:99 308 LVKADADLICESFNLGPARWLTEWNFPGA----QPPRVYRVIEEPEDITAKAERDEKVFRMSGFRPTRGYVQETYGVEVE 383 (488) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcCCc----CCceeEecCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHcCCCCc Confidence 99999999999999999999999999754 3699999999999999999999999997 999999999999999999 Q ss_pred CccchhcccCCCcccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH Q lcl|Aclame:pro 409 AKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALADLPAKDMQNQANDLLAPLLEAVNRGDSETELLGA 488 (526) Q Consensus 409 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~s~ee~~~~ 488 (526) .++++++.+.+....... .......+.+.+.+.+.+++++++++++|.+++++|+||+|++++ T Consensus 384 ~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~a~s~ee~~~~ 446 (488) T protein:vir:99 384 STQAEATAPTPSTEFAEG-----------------DQPSDPAAAMAPQLAEAMQPVVGNWTTQLRTLIEQASSLEDLRER 446 (488) T ss_pred ccccccccCCCcccCCCC-----------------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH Confidence 888876543322211110 001122355666777889999999999999999999999999999 Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHhHHhhhhhccC Q lcl|Aclame:pro 489 LAEAFPDMDDSALTDALHRLLFAADTWGRLHGNLDRID 526 (526) Q Consensus 489 L~~l~~~l~~~~l~~~l~~a~~~A~l~G~~~~~~e~~d 526 (526) |.++||+||.++|+++|++||++|+++||+++.+|.++ T Consensus 447 L~~l~~~~d~~~l~~~l~~a~~~a~l~G~~~~~~e~~~ 484 (488) T protein:vir:99 447 LLDLAPQLSLDQYAQAMAEGLEAAHLAGRNDVQEELDG 484 (488) T ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHhhhhhHhhhhcc Confidence 99999999999999999999999999999999999988 No 8 >protein:vir:95254 Length: 488 # NCBI annotation: Phage conserved protein # Family: family:all:2372 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944885;genbank:gi:158267601;genbank:GeneID:2744039 Probab=100.00 E-value=6.3e-113 Score=635.71 Aligned_cols=419 Identities=16% Similarity=0.177 Sum_probs=346.9 Q ss_pred hhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHH-------------HHHHHHHHHhccHHHHHHHHHHHHHHhcCCce Q lcl|Aclame:pro 25 LAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQA-------------QAELFMDMEERDAHLFAEMSKRKRAILGLDWA 91 (526) Q Consensus 25 ~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~-------------~~~l~~~m~~~D~~v~s~l~~Rk~av~~~~w~ 91 (526) ++. .+...+||||.||+.|++.+.+|+... +++||++|++ |+||+++|++|+++|++++|. T Consensus 1 ~~~-----~~~~~~gl~p~rl~~i~~~~~~~~~~~~~~~~~~~Lr~~~~~~ly~~m~~-D~hi~s~l~~Rk~av~~~~w~ 74 (488) T protein:vir:95 1 MAD-----ITETQESLPPFRMGEVGSLGLKVKNGRIYEEPRQALRFPESIKTFQLMMR-DPAVAASVNIIKMFVRKVNWR 74 (488) T ss_pred CCC-----ccccCCCCCHHHHHHHHHHhhccccchhhccchhhhcccchHHHHHHHhh-ChHHHHHHHHHHHHHhcCCce Confidence 111 245678999999999999999876654 4679999985 999999999999999999999 Q ss_pred EecCCCCCHH--HHHHHHHHHHHHhcCc-CHHHHHHHHHHhhhhcceeeeEEEeec------------CCeeEEeeeeee Q lcl|Aclame:pro 92 VEPPRNASAA--EKADADYLHELLLDLE-GLEDLLLDALDGIGHGYSCIELEWALQ------------GREWMPLAFHHR 156 (526) Q Consensus 92 v~~~~~~~~~--~~~~a~~v~~~l~~~~-~~~~~i~~~lda~~~G~s~~Ei~w~~~------------~g~~~~~~l~~r 156 (526) |+|+++++++ +.+++++|++++.+++ +|+++|++||+|++|||||+|++|.+. +|+|.|.+|.+| T Consensus 75 v~p~~~~~~d~~~~~~a~~v~~~l~~~~~~~~~~i~~~lda~~~G~s~~Eivw~~~~~~~~~~~~~~~dg~~~~~~i~~R 154 (488) T protein:vir:95 75 FVPPKGKEQDPKMLERADFFNSLMDDMEHDWADFINSVMSFCTYGFCVNEKVYKKRQGKKGKYQSKFDDGLIGWAKLPIR 154 (488) T ss_pred EecCCCCchhHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccceeeeeeeeccccccccccccccCCeeeeeeeeec Confidence 9998755433 4567899999999885 599999999999999999999999753 789999999999 Q ss_pred cC---ceeEecccCCceEEeccCC---------------CCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 157 PQ---SWFQLNPEDQNELRLRDNS---------------PAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHY 218 (526) Q Consensus 157 ~~---~~f~~~~~~~~~l~~~~~~---------------~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~ 218 (526) || +||.|+.++++.+++++.. ..++.+|++|||+|+|+++++||||.||+|.|||+|+||++ T Consensus 155 pq~~~~~f~~d~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~kfi~~~~~~~~g~p~g~gLlr~~~w~~~fK~~ 234 (488) T protein:vir:95 155 NQSTLDKWYFDEDFRRVTGVRQNLRNVSHIAGAINLGERPLTRKLPRAKFMLFKYDDEYGNPEGRSPLLNAYVPWKYKVQ 234 (488) T ss_pred CcccccceeeccCCCceeecccccccccccccccccccccccccccccceEEEeecCCCCccchhhHHHHHHHHHHHHHH Confidence 99 6999999998877766542 34567999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHcCCceEEEecCCC----CCHHHHHHHHHHHHHhhcC------eEEEecCCceEEEe---------ecCC Q lcl|Aclame:pro 219 ATSDLAEMLEIYGLPIRLGKYPPG----TADEEKATLLRAVTGLGHA------AAGIIPETMAIDFQ---------QAAQ 279 (526) Q Consensus 219 ~~~~w~~f~E~~G~P~~vgk~~~~----~~~~e~~~l~~al~~~~~~------~~~iip~~~~ie~~---------~a~~ 279 (526) ++++|+.|+||||+|++++++|++ +++++++++++++.+|+++ +++|||.|+++++. ++++ T Consensus 235 ~~~~w~~f~Er~g~g~p~~~~p~~~~~~~~~~e~~~l~~a~~~i~~~~~~~~~ag~iiP~g~~~~~k~~~~e~~l~~~~~ 314 (488) T protein:vir:95 235 IEEYEAVGVSRDLVGMPKIGLPPDYLDENAEPEKKAFVQYCKTVVNDMIANDRAGLIWPRYIDPDTKEDIFEFSLVSRQG 314 (488) T ss_pred HHHHHHHHHHHhcccceeEeeccCCCCCcccHHHHHHHHHHHHHHHHhhccchhheeeccccccccchhhhhhhcccccc Confidence 999999999999999999888754 6788899999999998765 67899999987773 3445 Q ss_pred CChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC Q lcl|Aclame:pro 280 GSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSP 359 (526) Q Consensus 280 ~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~ 359 (526) ++...|..+|+|||++|||+|||||||++. +++||+|+|+||++|+++++++|+++|+++||++||+|||.+||++. T Consensus 315 ~~~~~~~~li~~~d~~Isk~iLGqtLT~~~--~~~Gs~Al~~vh~ev~~~i~~aDa~~i~~tln~~li~~l~~~Nfg~~- 391 (488) T protein:vir:95 315 AKAYDTGSIIDRYSKQIMMAFMSDVLAMGQ--SKYGSFSLADSKTSLLAMSVDILLKQIKNVINRDLVAQTYALNMWDD- 391 (488) T ss_pred CCchhHHHHHHHHHHHHHHHHhcccccccc--CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC- Confidence 566789999999999999999999999864 45799999999999999999999999999999999999999999854 Q ss_pred CcccceeEEecCccccCHHHHHHHHHHHHhCCCcCC----HHHHHHHhCCCCCCccchhcccCCCccccccccccccccc Q lcl|Aclame:pro 360 DVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIP----SAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAAL 435 (526) Q Consensus 360 ~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~----~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 435 (526) .++|+|+|+..+++|++++++++++|+++|+.++ .+|++++||||+|.++++++.+.++++.+.+......... T Consensus 392 --~~~P~~~~~~~e~~Dl~~~ae~~~~L~~~G~~i~~~~~~~~i~e~~gip~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 469 (488) T protein:vir:95 392 --EEHVQITYDDIETPDLEAIGSYIQKTVAVGALEVDKELSNKLREHIGLPPADESQPVSEKLSPNSQSRSGDGYKTAGE 469 (488) T ss_pred --CCccEEEecCcChhhHHHHHHHHHHHHhCCCccccHHHHHHHHHHhCCCCCCCCccccccCCCCCCCCCCcccCCCcc Confidence 4589999999999999999999999999999998 6899999999999999888776554443333322221111 Q ss_pred ccccccccccccchHHHHHHHHHH Q lcl|Aclame:pro 436 ATIVGPRYGDQQALDKALADLPAK 459 (526) Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~ 459 (526) +.... ..+ .+........+ T Consensus 470 ~~~~~-~~~----~~~~~a~~~~~ 488 (488) T protein:vir:95 470 GTAKT-PSA----KDPSTANKANK 488 (488) T ss_pred cCCcc-ccc----ccchhhhhccC Confidence 11111 111 11111111111 No 9 >protein:vir:108215 Length: 469 # NCBI annotation: gp6 # Family: family:all:2372 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552335;genbank:gi:160700655;genbank:GeneID:5758935 Probab=100.00 E-value=1e-110 Score=623.55 Aligned_cols=428 Identities=14% Similarity=0.147 Sum_probs=328.9 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHH---HHHHHHHHHHhccHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQ---AQAELFMDMEERDAHLFAE 77 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~---~~~~l~~~m~~~D~~v~s~ 77 (526) |. .-.+|.++. ...+.-.++|+++. .++++++++++.. .+.+||++|+++|+||+++ T Consensus 1 ~~-------------~~~~~~~p~-----~~~g~~~~~~~~~~--~~~~~~~e~~~~lr~~~~~~ly~~m~e~D~~i~s~ 60 (469) T protein:vir:10 1 MT-------------ERVKTAAPV-----SEAGYVFGSGVVDG--WTVWDPFEQTPELQWPQSVAVYSRMDNEDSRVTSL 60 (469) T ss_pred CC-------------CcccCCCCc-----cchhhhhhcccccc--hhhccccccccccccccchHHHHHHHhhChHHHHH Confidence 11 112222221 11222334566554 5788888886542 5689999999999999999 Q ss_pred HHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcC------------cCHHHHHHHHH-HhhhhcceeeeEEEeec Q lcl|Aclame:pro 78 MSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDL------------EGLEDLLLDAL-DGIGHGYSCIELEWALQ 144 (526) Q Consensus 78 l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~------------~~~~~~i~~~l-da~~~G~s~~Ei~w~~~ 144 (526) |++||++|++++|+|+|++++++..+.+++.++..+... .+|.++|.+++ +|++|||||+|++|++. T Consensus 61 l~~rk~av~~~~w~v~p~~~~~e~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~a~~~G~s~~Eivw~~~ 140 (469) T protein:vir:10 61 LEAISLPIRSTPWRIRANGASDEVTEFVSRNLMVPIDGEDDVRNPGRSRGRFSWAEHLEEVTSPTLQFGHAVFEQVYRPR 140 (469) T ss_pred HHHHHHHHhcCCceEecCCCCHHHHHHHHHHHHhhhhhhhhhhhhhhhhccccHHHHHHHHHHHhhhhCceeeeeeeecc Confidence 999999999999999998876554444555544443211 13556666655 59999999999999865 Q ss_pred ----CCeeEEeeeeeecCc---eeEecccCCceEEecc------------CCCCceeecCCCeEEEeecCCCCccccchh Q lcl|Aclame:pro 145 ----GREWMPLAFHHRPQS---WFQLNPEDQNELRLRD------------NSPAGEALQPFGWIIHRPRARSGYVARSGL 205 (526) Q Consensus 145 ----~g~~~~~~l~~r~~~---~f~~~~~~~~~l~~~~------------~~~~g~~lp~~k~i~~~~~~~~g~p~g~gL 205 (526) +|.|.|.+|.+|||+ +|.|+.+++...+... ....++++|++|||+|+|++++|||||.|| T Consensus 141 ~~~~dG~~~~~~l~~rp~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lp~~k~i~~~~~~~~g~p~g~gL 220 (469) T protein:vir:10 141 NQSPDGRFWLRKLAPRPQWTISKFNVAPDGGLESIEQIAPPARTRGSLYVANIAPPEIPVNRLVVYTRNKRPGQWQGKSI 220 (469) T ss_pred cccCCCceeeeeeeecCcccceeeeeccCCceeeeeecCcccccccccccCCCCccccccCcEEEEEecCCCCCcccchh Confidence 588999999999997 4556666544333221 233568899999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHh--hcCeEEEecCCceEEEeecCCCChH Q lcl|Aclame:pro 206 FRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGL--GHAAAGIIPETMAIDFQQAAQGSSE 283 (526) Q Consensus 206 l~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~--~~~~~~iip~~~~ie~~~a~~~~~~ 283 (526) ++.|||+|+||++++++|+.|+||||+|++|||||++++++++++|++++++| ++++++|||.|++|+|++++ +++. T Consensus 221 lr~~~~~~~fK~~~~~~w~~f~EryG~P~~vgky~~~a~~~ek~~l~~a~~~~~~g~~a~~iip~~~~ie~~ea~-g~~~ 299 (469) T protein:vir:10 221 LRSAYKHWLLKDKLLRIEAATAERNGMGIPVGTASSATDEDEVRKMAALARSVRGGINAGVGLAQGQILELLGVS-GNLP 299 (469) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcceEEecCCCCCHHHHHHHHHHHHHHhcCCceEEEccCCceEEEeecC-CCch Confidence 99999999999999999999999999999999999999999999999999998 56899999999999999975 5667 Q ss_pred HHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc Q lcl|Aclame:pro 284 PFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRR 363 (526) Q Consensus 284 ~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~ 363 (526) +|..+++|||++|||+||||||||+ ++|||+|+++||++|+++++++|+++|+++||++||++|+.+||++. .+ T Consensus 300 ~~~~li~~~d~~Isk~iLG~tlTs~---~~gGS~a~~~vh~ev~~d~~~sDa~~i~~tln~~li~~l~~lN~g~~---~~ 373 (469) T protein:vir:10 300 DIRRAIEGHDRSIALSGLAHFLNLD---GKGGSYALASVLEDPFTQAVHAYATSICRIANQHIIEDLVDINFGVD---TP 373 (469) T ss_pred HHHHHHHHHHHHHHHHHhccccccc---CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---CC Confidence 8999999999999999999999985 24699999999999999999999999999999999999999999864 34 Q ss_pred ceeEEecCccccCHHHHHHHHHHHHhCCC----cCCHHHHHHHhCCCCCCccchhcccCCCccccccccccccccccccc Q lcl|Aclame:pro 364 APRLVFDLREQADITSMAQSIPALVNVGL----EIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIV 439 (526) Q Consensus 364 ~p~~~~~~~e~edl~~~a~~~~~l~~~G~----~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (526) +|+|+|+..+ ++.+..++++++|+++|+ +++.+|++++||||+|.++++++.+..+.+.+............... T Consensus 374 ~P~~~~~~~e-~~~~~~a~~i~~l~~~G~~~~~~~~~~~~~e~~gip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (469) T protein:vir:10 374 APVLTFDPIG-SRQDLTAAAVKLLYDAGVFDDDPAVKRAIRQRFNLPSELNDTPSAEPEEPAAVPNQSAAPARTRSSGNA 452 (469) T ss_pred ccEEEecCCC-CcHHHHHHHHHHHHhcCCccCccccHHHHHHHhCCCCCCCCcccccchhcccCCCCCccccccCCCCCc Confidence 7999998765 566888999999999999 88999999999999999999887654433222221111111111111 Q ss_pred ccccccccchHHHHHHH Q lcl|Aclame:pro 440 GPRYGDQQALDKALADL 456 (526) Q Consensus 440 ~~~~~~~~~~~~~~~~~ 456 (526) ....+...+....+.+. T Consensus 453 ~~~~~~~~~~~~~l~da 469 (469) T protein:vir:10 453 DARARAPKADQGVLFDA 469 (469) T ss_pred ccccccCCChHHhhccC Confidence 11111111111111111 No 10 >protein:vir:79511 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468055;genbank:gi:157265497;genbank:GeneID:5600628 Probab=100.00 E-value=7.1e-108 Score=608.03 Aligned_cols=425 Identities=13% Similarity=0.093 Sum_probs=345.4 Q ss_pred CCeeecCCCCccCcc--ccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQ--QLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEM 78 (526) Q Consensus 1 m~~~~~~~g~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l 78 (526) |++=- ....++... .....+++++++++..+..++..|++|.+++.+|+..+ + .++|++|++ |+||+|+| T Consensus 1 m~k~~-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iLr~~~--~----~~ly~~m~~-D~hi~s~l 72 (448) T protein:vir:79 1 MAKRG-RKPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELLQGKD--G----LLVYHKMLS-DGTVKNAL 72 (448) T ss_pred CCCCC-CCCccccCcccccccccchhhhhhhhhhcccccccccccchhHhhcccc--c----hHHHHHHhh-ChHHHHHH Confidence 88622 123222222 24555788999999999999999999999999998543 2 589999986 99999999 Q ss_pred HHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhc------CcCHHHHHHHHHHhhhhcceeeeEEEee-cCCeeEEe Q lcl|Aclame:pro 79 SKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLD------LEGLEDLLLDALDGIGHGYSCIELEWAL-QGREWMPL 151 (526) Q Consensus 79 ~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~------~~~~~~~i~~~lda~~~G~s~~Ei~w~~-~~g~~~~~ 151 (526) ++||++|++++|+|+|+++ +++++++|++|+++|.. ..+|+++|.+|++|++|||||+|++|.. .+|.|.+. T Consensus 73 ~~Rk~av~~~~w~v~p~~~-~~~~~~~ae~v~~~l~~~~~~~~~~~f~~~~~~~lda~~~G~s~~Eivw~~~~~g~~~~~ 151 (448) T protein:vir:79 73 NYIFGRIRSAKWYVEPAST-DPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIYENAYIYGMAAGEIVLTLGADGKLILD 151 (448) T ss_pred HHHHHHHhcCCceEecCCC-CHHHHHHHHHHHHHhhhhhhhhccCCHHHHHHHHHHhhhhcceeEEEEeeecCCCceecc Confidence 9999999999999998764 57889999999999864 2479999999999999999999999986 58899999 Q ss_pred eeeeecCc---eeEecccCCceEEeccCCC-------CceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 152 AFHHRPQS---WFQLNPEDQNELRLRDNSP-------AGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATS 221 (526) Q Consensus 152 ~l~~r~~~---~f~~~~~~~~~l~~~~~~~-------~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~ 221 (526) ++.+|||+ ||.|++++++.++++++.. +++++|..+|++| +++++|||||.||++.|||+|+||+++++ T Consensus 152 ~l~~r~~~~~~~f~~~~d~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~-~~~~~g~p~g~gLlr~~~w~~~fK~~~~~ 230 (448) T protein:vir:79 152 KIVPIHPFNIDEVLYDEEGGPKALKLSGEVKGGSQFVSGLEIPIWKTVVF-LHNDDGSFTGQSALRAAVPHWLAKRALIL 230 (448) T ss_pred cccccCCccccceeeecCCceEEeecCCcccccccCCCccccccceEEEE-ecCccCCcccchhHHHHHHHHHHHHHHHH Confidence 99999997 9999999988888776532 3456777777665 56899999999999999999999999999 Q ss_pred HHHHHHHHcCCceEEEecCCCCC--HHHHHHHHHHHHHh--hcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHH Q lcl|Aclame:pro 222 DLAEMLEIYGLPIRLGKYPPGTA--DEEKATLLRAVTGL--GHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAIS 297 (526) Q Consensus 222 ~w~~f~E~~G~P~~vgk~~~~~~--~~e~~~l~~al~~~--~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Is 297 (526) +|+.|+|+||+|++|||||++++ ++++++|+++++++ ++++++|||.||+|||++++++++ .|.++++|||++|| T Consensus 231 ~w~~f~E~yG~P~~vgky~~ga~~~~~~~~~l~~av~~i~~g~~a~~iiP~~~~ie~~ea~~~~~-~~~~~i~~~d~~Is 309 (448) T protein:vir:79 231 LINHGLERFMIGVPTLTIPKSVRQGTKQWEAAKEIVKNFVQKPRHGIILPDDWKFDTVDLKSAMP-DAIPYLTYHDAGIA 309 (448) T ss_pred HHHHHHHHcCCceEEEecCCCCCcCHHHHHHHHHHHHHHhcCCceEEEecCCceEEEEecCCCcc-cHHHHHHHHHHHHH Confidence 99999999999999999999876 57888999999987 688999999999999999875554 46679999999999 Q ss_pred HHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCH Q lcl|Aclame:pro 298 KAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADI 377 (526) Q Consensus 298 k~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl 377 (526) |+||||||||+.+ +|+|+. ...+|.+++++++++|+++|+++||++||++||++||++. .++|+|+|+..+++|+ T Consensus 310 k~iLGqtlTs~~~-~g~~~~-~~~~~~~v~~~~~~aDa~~i~~tln~~li~~l~~lNfg~~---~~~P~~~f~~~e~~Dl 384 (448) T protein:vir:79 310 RALGIDFNTVQLN-MGVQAI-NIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLPNWPSA---TRFPRLTFEMEERNDF 384 (448) T ss_pred HHHhhhhhccccc-cchhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---CCCcEEEecCCChHHH Confidence 9999999999743 333333 3347889999999999999999999999999999999864 3589999999999999 Q ss_pred HHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccccccc Q lcl|Aclame:pro 378 TSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQA 448 (526) Q Consensus 378 ~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (526) +++|+++++|++++ +...+|+++++|+|++.++++...+...++...+..........-+. ... T Consensus 385 ~~~a~~~~~l~~~~-~~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~------~~~ 448 (448) T protein:vir:79 385 SAAANLMGMLINAV-KDSEDIPTELKALIDALPSKMRRALGVVDEVREAVRQPADSRYLYTR------RRR 448 (448) T ss_pred HHHHHHhhhhhccc-hhhHHHHHHhhcCCCCCCCccccccCCCCcccccccCCccccchhhc------ccC Confidence 99999999999885 67889999999999988776543322222111111100000000000 000 No 11 >protein:vir:98816 Length: 446 # NCBI annotation: hypothetical protein # Family: family:all:32558 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851097;genbank:gi:117530254;genbank:GeneID:4484480 Probab=100.00 E-value=4e-108 Score=609.39 Aligned_cols=391 Identities=11% Similarity=0.075 Sum_probs=317.8 Q ss_pred CCeeecCCCCccCcccc-chhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQL-REPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMS 79 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~ 79 (526) |. ..+... ......++++..+.+. ..+|+. ..+.+|+.++ |++.++.+||++|+++|+||+|+|+ T Consensus 1 ~~---------~~~~~~p~~~~~~~~~~~~~~~~--~~~g~~--~~D~~lr~~g-g~~~~~~~l~~~m~e~D~~v~s~l~ 66 (446) T protein:vir:98 1 MN---------MEVRNAPTPAIRRRTIYAMEHLG--LATSYL--SEDGGYKRAG-KPTYQQLSAWDEAAQTEPIIAQGLD 66 (446) T ss_pred Cc---------ccccCCCchhhhhhhhhccccch--hhcccC--CcchHhhhcC-CChHHHHHHHHHHHhcchHHHHHHH Confidence 22 111110 0111112222211111 122322 2367888874 7999999999999999999999999 Q ss_pred HHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecCCeeEEeeee----e Q lcl|Aclame:pro 80 KRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPLAFH----H 155 (526) Q Consensus 80 ~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~~~~~l~----~ 155 (526) +||++|++++|+|+|++ +++|++|+++|.+++ |+.++.+|++|++|||||+|++|++.+|.+.|.++. . T Consensus 67 ~Rk~av~~~~w~V~p~~------~~~a~~v~~~l~~~~-~~~~~~~~ldai~~G~s~~Eivw~~~~g~~~p~~~~d~~~~ 139 (446) T protein:vir:98 67 SIALSVLNKVGPYQHGD------KRIKKFIDDQLRNRA-KTWISHCVKSIMTYGFSLSEQIYAHGARDNMPATVLDDIVN 139 (446) T ss_pred HHHHHhhcCCceecCcc------HHHHHHHHHHHhhcC-chhHHHHHHHHHhhCceeeeEEEeecccccccchhhccccc Confidence 99999999999999852 468999999999984 899999999999999999999999998888876542 2 Q ss_pred ecCc--eeEecccCCce--------------------------EEeccCCCCceeecCCCeEEEeecCCCCccccchhHH Q lcl|Aclame:pro 156 RPQS--WFQLNPEDQNE--------------------------LRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFR 207 (526) Q Consensus 156 r~~~--~f~~~~~~~~~--------------------------l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~ 207 (526) +++. +|.|+.+++.. .+.......++++|+.||++|+|+++++||||.||+| T Consensus 140 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iP~~kfi~~~~~~~~~~p~G~gLlr 219 (446) T protein:vir:98 140 YHPLQVMLIANDNGRIVDGDTVTASQYKSGYWVPLPPYRIGDPPKKVDVVGSHVRLPSHKRLFINYNTKGNNPWGTSCLT 219 (446) T ss_pred cccccceeeeccCCccccccccchhhcccccccCcccchhhhhhhhcccCcccccccccceEEEEecCCCCCccccchHH Confidence 2222 23444433210 0111123345779999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHH-------------HHHHHHHHHhhcCeEEEe-----cCC Q lcl|Aclame:pro 208 VLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEK-------------ATLLRAVTGLGHAAAGII-----PET 269 (526) Q Consensus 208 ~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~-------------~~l~~al~~~~~~~~~ii-----p~~ 269 (526) .|||+|+||++++++|+.|+||||+|+++||||++++++++ +.|+++|+++++++++|| |+| T Consensus 220 ~~~w~~~fK~~~~~~w~~f~E~yG~P~~vGkyp~ga~~~~~~~~~~~~~~~~~~~~L~~av~~~~~da~~ii~~~~~P~g 299 (446) T protein:vir:98 220 SVLDYSIFKRAFRDMMLIALDRYGTPLIYVIVPPGNTGVVEEAPDGTEITTTIAEQAEDALRRLSTDSGLVLTQLSKEQP 299 (446) T ss_pred HHHHHHHHHHhhHHHHHHHHhHcCCceeEEeecCCCCcccccchhHHHHHHHHHHHHHHHHHhccccceeeeecccCCCC Confidence 99999999999999999999999999999999999987666 359999999999999999 999 Q ss_pred ceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 270 MAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWP 349 (526) Q Consensus 270 ~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~ 349 (526) |+|||++++++++.+|+++|+|||++|||+|||||||+++.++++||+|+|+||++|+.+++++|+++|+++||+|||+| T Consensus 300 ~eie~~ea~~~~~~~~~~~i~~~d~~IskaiLg~~Ltl~~~~~~~GS~ala~vh~~V~~d~~~aDa~~i~~tln~~Li~~ 379 (446) T protein:vir:98 300 VQVGALTTGNNFSDSFERAISLCDNNMLMGMGIPNLLVQNRETTFGTGRASEIQLELFDGKINSIFDTVIHAFTEQVIGN 379 (446) T ss_pred ceEEeeccccCChhhHHHHHHHHHHHHHHHHhcccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 99999999877777899999999999999999999998777778899999999999999999999999999999999999 Q ss_pred HHHhcCCCCCCccc--ceeEEecCccccCHHHHHHHHHHHHhCCCcC--CHHHHHHHhCCCCCCccc Q lcl|Aclame:pro 350 LLVLNRPGSPDVRR--APRLVFDLREQADITSMAQSIPALVNVGLEI--PSAWVYDKLGIPQPAKNE 412 (526) Q Consensus 350 l~~~Nf~~~~~~~~--~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v--~~~~~~e~~Glp~~~~~e 412 (526) ||++||++...+.+ .|+++|+..+++|++.+++++++|+++|+.+ +++|++++||||+..++. T Consensus 380 l~~lNf~~~~~~~~~~~~~~~~~~~e~eDl~~~a~~~~~L~~~G~~~p~~~~~ire~~giP~~~~~~ 446 (446) T protein:vir:98 380 LIRLNFDPALYPLASNTGYITRLPGRATDLAALVEAIKQMHDMGFLVDGDKDHIRSITGLPDAISST 446 (446) T ss_pred HHHhCCCccccccccccccceeccCChhhHHHHHHHHHHHHhCCccccccHHHHHHHhCcCCCCCCC Confidence 99999997654332 2456788889999999999999999999865 578999999998876554 No 12 >protein:vir:77981 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467939;genbank:gi:157265380;genbank:GeneID:5600471 Probab=100.00 E-value=4.3e-107 Score=603.70 Aligned_cols=423 Identities=16% Similarity=0.160 Sum_probs=336.0 Q ss_pred CCeeecCCCCccC----ccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIR----TQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFA 76 (526) Q Consensus 1 m~~~~~~~g~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s 76 (526) |++ ..++|-. ...+...+++++++.+..+..||..|++|.+++.+|+..+ ..+||++|++ |+||++ T Consensus 1 m~k---k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iLr~~~------~~~ly~~m~~-D~hi~s 70 (448) T protein:vir:77 1 MAK---RGRKPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELLQGKD------GLLVYHKMLS-DGTVKN 70 (448) T ss_pred CCC---CCCCCcccCCcccccchhhhhhhccchhhhcccccccccccchhHhhcccc------chHHHHHHhh-ChHHHH Confidence 998 3455532 2223455778899999999999999999999999998532 3689999986 999999 Q ss_pred HHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcC------cCHHHHHHHHHHhhhhcceeeeEEEee-cCCeeE Q lcl|Aclame:pro 77 EMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDL------EGLEDLLLDALDGIGHGYSCIELEWAL-QGREWM 149 (526) Q Consensus 77 ~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~------~~~~~~i~~~lda~~~G~s~~Ei~w~~-~~g~~~ 149 (526) +|++||++|++++|+|+|+++ +++++++|++|+++|... .+|++++.+||+|++|||||+|++|.+ .+|.|. T Consensus 71 ~l~~Rk~av~~~~w~v~p~~~-~~~d~~~ae~v~~~l~~~~~~~~~~~f~~~i~~~lda~~~G~s~~Eivw~~~~dg~~~ 149 (448) T protein:vir:77 71 ALNYIFGRIRSAKWYVEPAST-DPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIYENAYIYGMAAGEIVLTLGADGKLI 149 (448) T ss_pred HHHHHHHHHhcCCceEecCCC-CHHHHHHHHHHHHHhhchhhhhccCCHHHHHHHHHHhhhhcceeEEEEEeecCCCcee Confidence 999999999999999999765 577899999999998652 379999999999999999999999986 589999 Q ss_pred EeeeeeecC---ceeEecccCCceEEeccCCC-------CceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHH Q lcl|Aclame:pro 150 PLAFHHRPQ---SWFQLNPEDQNELRLRDNSP-------AGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYA 219 (526) Q Consensus 150 ~~~l~~r~~---~~f~~~~~~~~~l~~~~~~~-------~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~ 219 (526) +.++.+||| +||.|+.+++++++++.+.. +++++|..+|++| +++++|||||.||++.|||+|+||+++ T Consensus 150 ~~~l~~r~~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~-~~~~~g~p~g~gLlr~~~w~~~fK~~~ 228 (448) T protein:vir:77 150 LDKIVPIHPFNIDEVLYDEEGGPKALKLSGEVKGGSQFVNGLEIPIWKTVVF-LHNDDGSFTGQSALRAAVPHWLAKRAL 228 (448) T ss_pred eccccccCCCccceeeeecCCceEEEecCCcccccccCCCccccccceEEEE-ecCCcCCcccchHHHHHHHHHHHHHhh Confidence 999999998 59999999998888776543 3456666666655 668899999999999999999999999 Q ss_pred HHHHHHHHHHcCCceEEEecCCCCC--HHHHHHHHHHHHHh--hcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHH Q lcl|Aclame:pro 220 TSDLAEMLEIYGLPIRLGKYPPGTA--DEEKATLLRAVTGL--GHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDA 295 (526) Q Consensus 220 ~~~w~~f~E~~G~P~~vgk~~~~~~--~~e~~~l~~al~~~--~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~ 295 (526) +++|+.|+|+||+|++|||||++++ ++++++|+++++++ ++++++|||.||+|||++++++++ .|.++++|||++ T Consensus 229 ~~~w~~f~E~yG~P~~vgky~~ga~~~~~~~~~l~~av~~i~~g~~a~~iiP~g~~ie~~ea~~~~~-~~~~~i~~~d~~ 307 (448) T protein:vir:77 229 ILLINHGLERFMIGVPTLTIPKSVRQGTKQWEAAKEIVKNFVQKPRHGIILPDDWKFDTVDLKSAMP-DAIPYLTYHDAG 307 (448) T ss_pred HHHHHHHHHHcCCceeEEecCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecCCceEEEEecCCCcc-CHHHHHHHHHHH Confidence 9999999999999999999999876 46888999999987 688999999999999999875554 477899999999 Q ss_pred HHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCcccc Q lcl|Aclame:pro 296 ISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQA 375 (526) Q Consensus 296 Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~e 375 (526) |||+||||||||+.+ +|+++.+.+ +|.+++.+++++|+++|+++||++||++||++||++. .++|+|+|+..+++ T Consensus 308 Isk~iLGqtlTs~~~-~g~~~~~~~-~~~~v~~~~~~aDa~~i~~tln~~Li~~l~~lNfg~~---~~~P~~~f~~~e~e 382 (448) T protein:vir:77 308 IARALGIDFNTVQLN-MGVQAVNIG-EFVSLTQQTIISLQREFASAVNLYLIPKLVLPNWPGA---TRFPRLTFEMEERN 382 (448) T ss_pred HHHHHhccccccccc-cchhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---CCCCEEEecCCChh Confidence 999999999999743 333344444 5667999999999999999999999999999999864 35899999999999 Q ss_pred CHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccccccchHHHHHH Q lcl|Aclame:pro 376 DITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALAD 455 (526) Q Consensus 376 dl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (526) |++++++++++|++ ++++++|||++.++.... .++.+.+..+ ....... +..+..+.. T Consensus 383 Dl~~~a~~~~~l~~--------~~~~~~~ip~~~~~~~~~----~~~~~~~~~~----~~~~~~~---~~~~~~~~~--- 440 (448) T protein:vir:77 383 DFSAAANLMGMLIN--------AVKDSEDIPTELKALIDA----LPSKMRRALG----VVDEVRE---AVRQPADSR--- 440 (448) T ss_pred hHHHHHHHhHHHHH--------HHHHHhcCCccCCcCCCC----CchhcccccC----CCCCCCc---hhhcchhhH--- Confidence 99999999999974 699999999876543211 1111111110 0000000 000011111 Q ss_pred HHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 456 LPAKDMQNQANDLLAPLLE 474 (526) Q Consensus 456 ~~~~~~~~~~~~~~~~i~~ 474 (526) .+....++ T Consensus 441 -----------~~~~r~~~ 448 (448) T protein:vir:77 441 -----------YLYTRRRR 448 (448) T ss_pred -----------HHHhhhcC Confidence 00011111 No 13 >protein:vir:78161 Length: 355 # NCBI annotation: hypothetical protein # Family: family:all:2372 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294798;genbank:gi:149882819;genbank:GeneID:5309189 Probab=100.00 E-value=1.1e-84 Score=480.82 Aligned_cols=331 Identities=17% Similarity=0.140 Sum_probs=250.7 Q ss_pred eeeEEEeecCCeeEEeeeeeecCc---eeEecccCCceEEe-c-cCCCCceeecCCCeEEEeecCCCCccccchhHHHHH Q lcl|Aclame:pro 136 CIELEWALQGREWMPLAFHHRPQS---WFQLNPEDQNELRL-R-DNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLA 210 (526) Q Consensus 136 ~~Ei~w~~~~g~~~~~~l~~r~~~---~f~~~~~~~~~l~~-~-~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~ 210 (526) |+||+|++++|.|.|.+|.+|||+ ||.++.++++..+. . .++.+++++|++|||+|+|+.+++||||.||++.|| T Consensus 1 v~Eivw~~~~g~~~~~~l~~r~~~~~~~f~~~~~~~l~~~~~~~~~g~~~~~lp~~kfi~~~~~~~~g~p~G~gLlr~~~ 80 (355) T protein:vir:78 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) T ss_pred CeEEEEEeeCCeEEEeeeeecCccceeeeeeccCCceeEEEecCCCCCCcceeccCCEEEEEeCCCCCCccchhhHHHHH Confidence 999999999999999999999998 56666665543322 2 234567899999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEEecCCCC-------------CHHHHHHHHHHHHHhh--cCeEEEecCCceEEEe Q lcl|Aclame:pro 211 WPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGT-------------ADEEKATLLRAVTGLG--HAAAGIIPETMAIDFQ 275 (526) Q Consensus 211 ~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~-------------~~~e~~~l~~al~~~~--~~~~~iip~~~~ie~~ 275 (526) |+|+||++++++|+.|+||||+|+++++|+.+. +.++++++.++++++. +++++|||.||+|||+ T Consensus 81 w~~~fK~~~~~~w~~f~Er~g~g~p~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~i~~g~~a~~iip~g~~ie~~ 160 (355) T protein:vir:78 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLT 160 (355) T ss_pred HHHHHHHhhHHHHHHHHHHcCCCceEEEecCCCCcccchhhhHHHHHHHHHHHHHHHHHHhhCCcceeEeecCCceEEEe Confidence 999999999999999999998888887776542 3456778888888874 4599999999999999 Q ss_pred ecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 276 QAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNR 355 (526) Q Consensus 276 ~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf 355 (526) +++++ ...|.++++|||++|||+||||||||+++ +++||+|+|+||++|+++++++|+++|+++||++||++|+.+|| T Consensus 161 ea~g~-~~~~~~~i~~~d~~Isk~iLGqtlTs~~~-~~gGS~Alg~vh~~v~~~~~~aD~~~i~~~ln~~li~~l~~lN~ 238 (355) T protein:vir:78 161 GVQGK-LPEMDGPIRYHDEQIARAVLAHFLTLGGD-KSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNW 238 (355) T ss_pred ecCCC-cccHHHHHHHHHHHHHHHHhhhhhccccC-CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Confidence 97644 44588899999999999999999999754 46799999999999999999999999999999999999999999 Q ss_pred CCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCC----HHHHHHHhCCCCCCccchhcccCCCccccccccccc Q lcl|Aclame:pro 356 PGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIP----SAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQR 431 (526) Q Consensus 356 ~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~----~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~ 431 (526) ++. .++|+|+|+..+ +|...+++++++|+++|+.++ .+|++++||||+|.++++.+.+..++..+....... T Consensus 239 ~~~---~~~P~~~~~~~~-~~~~~~a~~~~~l~~~G~~~~~~~~~~~~~e~~gip~p~~~~~~~~~~~~~~~~~~~~~~~ 314 (355) T protein:vir:78 239 GPE---EPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRL 314 (355) T ss_pred CCC---CCCCEEEecCcC-hhHHHHHHHHHHHHhCCCccccHHHHHHHHHHhCCCCCCCCCcccCCcccccccccccccc Confidence 864 358999998765 455678999999999999887 469999999999998887665444333222221111 Q ss_pred ccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 432 VAALATIVGPRYGDQQALDKALADLPAKDMQNQANDLLAPLLEAVNRGD 480 (526) Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~ 480 (526) .+.................+.. +++...-+.+.......++ T Consensus 315 ~~~~~~~~~~a~~~~a~~~~~~--------~~~~~~~~~~~~~~~~~~~ 355 (355) T protein:vir:78 315 PGQRQGAALPSRSPRADPPRRR--------GPLRRRPRHPAHRRCAPDG 355 (355) T ss_pred CCccccccccccCCCCCChhhh--------HHHHHHhhccccCCCCCCC Confidence 1111111111111101111111 1112222222222233333 No 14 >protein:vir:101648 Length: 518 # NCBI annotation: gp11 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654766;genbank:gi:109302764;genbank:GeneID:4156082 Probab=99.92 E-value=7e-24 Score=147.52 Aligned_cols=466 Identities=14% Similarity=0.118 Sum_probs=271.8 Q ss_pred eecCCCCccCccccchhhhhhh-hhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHHHH Q lcl|Aclame:pro 4 IVDVYGNPIRTQQLREPQTSRL-AGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSKRK 82 (526) Q Consensus 4 ~~~~~g~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk 82 (526) .+=..|+-+.. |.-++. ..+...+...+..+.... ....++-.+..+-+.|.+|+..+- T Consensus 1 ~~~~~~~~~~~-----p~~~e~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~a~~~~~V~acV~~IA 60 (518) T protein:vir:10 1 MLLANGQTLSA-----PAMAELSPQMQDSYYYAPAVGMQLE---------------RQFSLYGGIYKNQPWVRTVIAKRA 60 (518) T ss_pred CcccCceeecC-----chhhhhhhhhhcccccccccceecc---------------cccchhhHHHhhhHHHHHHHHHHH Confidence 33445554422 111111 111122222122222111 111222222336789999999999 Q ss_pred HHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeec Q lcl|Aclame:pro 83 RAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRP 157 (526) Q Consensus 83 ~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~ 157 (526) ..|.+++|.+.-..++...+. ....+..++ ..| ...++++.++ +.+.+|.++++++++.+| .+..|.+.+ T Consensus 61 ~~iA~lpl~l~~~~~~~~~~~-~~~~~~~Ll-~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G---~~~~L~~l~ 135 (518) T protein:vir:10 61 QALARLPVKCMFTSGDTETEE-SDTGYAKLL-ADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSG---TPEKLMPMH 135 (518) T ss_pred HhhccCceEEEEEcCCCceec-cchHHHHHH-cCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCC---cEEEEEEEC Confidence 999999998854332221111 111122222 223 2456777666 577899999999875543 467899999 Q ss_pred CceeEecccCC-ceEEec--cCCCC---ceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcC Q lcl|Aclame:pro 158 QSWFQLNPEDQ-NELRLR--DNSPA---GEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYG 231 (526) Q Consensus 158 ~~~f~~~~~~~-~~l~~~--~~~~~---g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G 231 (526) +.++++..+.. ..+.+. ..... ...+++...|+.++....+..+|.|.+..+......-....++...|...-| T Consensus 136 p~~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~eViHir~~s~dg~~~G~spi~~a~~~i~~~~a~~~~~~~~f~ng~ 215 (518) T protein:vir:10 136 PSRVAIKRNSRTGRYEYYFQAGAGVGTQLVSFADDEVVPIRFFNPDGLERGLSLMESLKSTIFSEDSSRNATAAMWKNAG 215 (518) T ss_pred CCceEEEEcCCCCEEEEEEEecCCccceEEEecCCcEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCC Confidence 98887655432 233332 22221 2346777766666555555568999999999988888888999999999999 Q ss_pred CceEEEecCCCCCHHHHHHHHHHHHHhhc-----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhh Q lcl|Aclame:pro 232 LPIRLGKYPPGTADEEKATLLRAVTGLGH-----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLT 306 (526) Q Consensus 232 ~P~~vgk~~~~~~~~e~~~l~~al~~~~~-----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtlt 306 (526) .|--+.+++...++++++++.+.+.+.-. ...+|++.|++++-++.+. .-..|.+..++..++|++++..+.-- T Consensus 216 ~p~gil~~~~~ls~e~~~~~k~~~~~~~~G~~nag~v~vL~~G~~~~~l~~s~-~D~q~le~r~~~~~eIa~afgVPp~~ 294 (518) T protein:vir:10 216 RPNLVLRHEKRLSEAAQQRLREQFDRAHSGSSNTGKTMVVEEGMEPIPLQLTA-VEMQFIEARQLNREEVCGVYDIAPPI 294 (518) T ss_pred CccEEEecCCCCCHHHHHHHHHHHHHHhcCccccCcceEcCCCceEEEccCCh-hHHHHHHHHHHHHHHHHHHhCCCHHH Confidence 99999999988899998888888776532 2468889998887775432 22347778889999999998766443 Q ss_pred cccccccchhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEec--CccccCHHHHHHH Q lcl|Aclame:pro 307 STTSQSGGGAFALGQVHNEV-RHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFD--LREQADITSMAQS 383 (526) Q Consensus 307 t~~~~~~~gS~a~~~vh~~v-~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~--~~e~edl~~~a~~ 383 (526) .+.. ..++++..+.+... ...-+.-.++.|+..||+.|++.+- ... +|+|+ .....|.+.+++. T Consensus 295 lg~~--~~~t~sn~eq~~~~f~~~tL~P~l~~ie~~ln~~L~~~~~---------~~~--~~~fd~~~llr~D~~~r~~~ 361 (518) T protein:vir:10 295 VHIL--DRATFSNISAQMRAFYRDTMAIPIARIQSAMDKYVGQYWV---------RKN--RMKFDIDDVIQPDWEAKSES 361 (518) T ss_pred hccC--CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---------CCc--eEEEechhhhccCHHHHHHH Confidence 3322 23455544444333 4456888899999999987754321 111 34554 4446799999999 Q ss_pred HHHHHhCCCcCCHHHHHHHhCCCCCC--ccchhcccCC--------C------cccccccccccccccccc--ccc---c Q lcl|Aclame:pro 384 IPALVNVGLEIPSAWVYDKLGIPQPA--KNEPVLRSAA--------Q------PAILSRQHGQRVAALATI--VGP---R 442 (526) Q Consensus 384 ~~~l~~~G~~v~~~~~~e~~Glp~~~--~~e~~~~~~~--------~------~~~~~~~~~~~~~~~~~~--~~~---~ 442 (526) +.++++.|+ ++.+++|+.+|+|+.+ .++....+.. . .++.+..+.......... ... . T Consensus 362 ~~~~~~~G~-lT~NE~R~~~Gl~pie~~~gD~~~~~~n~~pl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (518) T protein:vir:10 362 TQKMVNSGV-ATPNEGREIMGLPRSDDPKADELYANSALQPLGATPDGAVEGEEAPAPKRPASTPVASLDQSPPTSVPGL 440 (518) T ss_pred HHHHHhCCC-cCHHHHHHHhCCCCCCCCCCCeeeecccceecccccccccCCCCCCCCCCCCccccccccccccccCCCC Confidence 999999998 9999999999998754 2333221100 0 000000000000000000 000 0 Q ss_pred -cccccchHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCHHHHHHHH-HHHHHHH Q lcl|Aclame:pro 443 -YGDQQALDK--------ALADLPAKDMQNQANDLLAPLLEAVNRGDSETELLGALAEAFPDMDDSALTDAL-HRLLFAA 512 (526) Q Consensus 443 -~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~a~s~ee~~~~L~~l~~~l~~~~l~~~l-~~a~~~A 512 (526) .......++ .+..-..+ ......+..|...+-.+++++-+.-.|.+-||+ +|++.| +--+.+ T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~- 512 (518) T protein:vir:10 441 SPTNSDRSTDSGKTEPRRLMQKPPPK---ESSPKHLRAVKGAMGRGKDIKGFALQLAEKYPD----DLEDILLAVQLAL- 512 (518) T ss_pred CcccccccccccccchhccccCCCcc---cccchHHHHHHHHhhcCccchhHhhhhhhhcch----hHHHHHHHHHHhh- Confidence 000000000 01111111 222345555677888999999999999999984 444432 222222 Q ss_pred HHHhHHhhhhhccC Q lcl|Aclame:pro 513 DTWGRLHGNLDRID 526 (526) Q Consensus 513 ~l~G~~~~~~e~~d 526 (526) .|.+| T Consensus 513 ---------~~~~~ 517 (518) T protein:vir:10 513 ---------AERKD 517 (518) T ss_pred ---------hhccC Confidence 23334 No 15 >protein:vir:7853 Length: 518 # NCBI annotation: gp10 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817460;genbank:gi:29565889;genbank:GeneID:1259085 Probab=99.92 E-value=1.9e-23 Score=145.18 Aligned_cols=466 Identities=15% Similarity=0.128 Sum_probs=272.8 Q ss_pred eecCCCCccCccccchhhhhhhh-hhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHHHH Q lcl|Aclame:pro 4 IVDVYGNPIRTQQLREPQTSRLA-GLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSKRK 82 (526) Q Consensus 4 ~~~~~g~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk 82 (526) .|=..|+-+ +.|..+++. .++..+...+..+..+.+ ...++-.+..+.+.|.+|+..+- T Consensus 1 ~~~~~~~~~-----~~p~~~~~~~~~~~~~~~~~~~g~~~~~---------------~~~~~~~~~~~~~~V~acV~~IA 60 (518) T protein:vir:78 1 MLLANGQTL-----SAPAMAELSPQMQDSYYYAPAVGMQLER---------------QFSLYGGIYKNQPWVRTVIAKRA 60 (518) T ss_pred CcccCceee-----ccchhhhhhhhhhhcccccceeceeccc---------------ccchhhHHhhhhHHHHHHHHHHH Confidence 334455533 222222221 122222222222322221 22222222346899999999999 Q ss_pred HHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcC----HHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeec Q lcl|Aclame:pro 83 RAILGLDWAVEPPRNASAAEKADADYLHELLLDLEG----LEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRP 157 (526) Q Consensus 83 ~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~----~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~ 157 (526) ..|.+++|.+.-..++...+. ....+..++ ..|+ ..++++.++ +.+.+|.++++++++..| .|..|.+.+ T Consensus 61 ~~iA~lp~~l~~~~~~~~~~~-~~~~~~~Ll-~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G---~~~~L~~l~ 135 (518) T protein:vir:78 61 QALARLPVKCMFTSGDTETEE-HDTGYAKLL-ADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSG---TPEKLMPMH 135 (518) T ss_pred HhhccCceEEEEEcCCccccc-cchHHHHHH-hCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCC---cEEEEEEEC Confidence 999999999965433221111 111122222 2232 446666666 567899999999875543 367899999 Q ss_pred CceeEecccCC-ceEEe--ccCCCC---ceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcC Q lcl|Aclame:pro 158 QSWFQLNPEDQ-NELRL--RDNSPA---GEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYG 231 (526) Q Consensus 158 ~~~f~~~~~~~-~~l~~--~~~~~~---g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G 231 (526) +.++++..+.. ..+.+ ...... ...+++...|+.++....+..+|.|.+..+....-.-....++...|....| T Consensus 136 p~~Vtv~~~~~~~~~~y~~~~~~~~~~~~~~~~~~eIiHir~~~~dg~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~Ng~ 215 (518) T protein:vir:78 136 PSRVAIKRNSRTGRYEYYFQAGAGVGTQLVSFADDEVVPIRFFNPDGLERGLSLMESLKSTIFSEDSSRNATAAMWKNAG 215 (518) T ss_pred CCceEEEEcCCCCEEEEEEEecCCccceeEEecCCcEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCC Confidence 98887655432 23322 222221 2347777766665555455568999999999888888888889999999999 Q ss_pred CceEEEecCCCCCHHHHHHHHHHHHHhhc-----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhh Q lcl|Aclame:pro 232 LPIRLGKYPPGTADEEKATLLRAVTGLGH-----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLT 306 (526) Q Consensus 232 ~P~~vgk~~~~~~~~e~~~l~~al~~~~~-----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtlt 306 (526) .|--|.+++...++++++++.+.+.+.-+ ...+|++.|++++-++.+. .-..|.+..++...+|++++..+.-- T Consensus 216 ~p~gvl~~~~~ls~e~~~~~k~~~~~~~~G~~nag~~~vL~~G~~~~~l~~~~-~d~q~le~r~~~~~eIa~afgVPp~~ 294 (518) T protein:vir:78 216 RPNLVLRHEKRLSPEAQQRLREQFDRAHAGSSNTGKTMVVEEGMEPIPLQLTA-VEMQFIEARQLNREEVCGVYDIAPPI 294 (518) T ss_pred CccEEEecCCCCCHHHHHHHHHHHHHHhcCcccCCceeEcCCCceEEeccCCh-hHHHHHHHHHHHHHHHHHHhCCCHHH Confidence 99999999988899998888888876532 2468889998887775432 23357778889999999998766433 Q ss_pred cccccccchhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEec--CccccCHHHHHHH Q lcl|Aclame:pro 307 STTSQSGGGAFALGQVHNEV-RHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFD--LREQADITSMAQS 383 (526) Q Consensus 307 t~~~~~~~gS~a~~~vh~~v-~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~--~~e~edl~~~a~~ 383 (526) .+.. ..++++..+.+... ...-+...+..|+..||+.|++.+- .. .+|+|+ .....|.+.+++. T Consensus 295 lg~~--~~st~sn~e~~~~~f~~~tL~P~~~~ie~eln~~L~~~~~---------~~--~~~~fd~~~Llr~D~~~r~~~ 361 (518) T protein:vir:78 295 VHIL--DRATFSNISAQMRAFYRDTMAIPIARIQSAMDKYVGQYWV---------RK--NRMKFDIDDVIQPDWEAKSES 361 (518) T ss_pred hccC--CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---------Cc--ceEEeechhhhccCHHHHHHH Confidence 3322 23555544444433 3556888899999999987764321 11 134554 4446799999999 Q ss_pred HHHHHhCCCcCCHHHHHHHhCCCCCC--ccchhcccCC--------------Ccccccccccccccccccccccc----- Q lcl|Aclame:pro 384 IPALVNVGLEIPSAWVYDKLGIPQPA--KNEPVLRSAA--------------QPAILSRQHGQRVAALATIVGPR----- 442 (526) Q Consensus 384 ~~~l~~~G~~v~~~~~~e~~Glp~~~--~~e~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~----- 442 (526) +.++++.|+ ++.+++|+.+|+|+.+ .++....+.. ..++.+..+.............. T Consensus 362 ~~~~~~~G~-lT~NE~R~~~gl~pie~~~gD~~~v~~n~~pl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (518) T protein:vir:78 362 TQKMVNSGV-ATPNEGREIMGLPRSDDPKADELYANSALQPLGATPDGAVEGEEAPAPKRPASTPVASLDQSPPASVPGL 440 (518) T ss_pred HHHHHhCCC-cCHHHHHHHhCCCCCCCCCCceeeecccceecccccccccCCCCCCCCCCCCcccccccccCccccCCCC Confidence 999999998 9999999999998754 2333221100 00000000000000000000000 Q ss_pred -cccccchHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCHHHHHHHH-HHHHHHH Q lcl|Aclame:pro 443 -YGDQQALDK--------ALADLPAKDMQNQANDLLAPLLEAVNRGDSETELLGALAEAFPDMDDSALTDAL-HRLLFAA 512 (526) Q Consensus 443 -~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~a~s~ee~~~~L~~l~~~l~~~~l~~~l-~~a~~~A 512 (526) .......++ .+......++ ....+..|...+-.+++++-+.-.|.+-||+ +|++.| +--+.+ T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~- 512 (518) T protein:vir:78 441 SPTNSDRSTDSGKTEPRRLMQKPPPKES---SPKHLRAVKGAMGRGKDIKGFALQLAEKYPD----DLEDILLAVQLAL- 512 (518) T ss_pred CcccccccccccccchhcccCCCCcccc---cchHHHHHHHHhhcCCcchhhhhhhhhhcch----hHHHHHHHHHHhh- Confidence 000000000 0111111222 2344555677888999999999999999984 444432 222222 Q ss_pred HHHhHHhhhhhccC Q lcl|Aclame:pro 513 DTWGRLHGNLDRID 526 (526) Q Consensus 513 ~l~G~~~~~~e~~d 526 (526) .|.+| T Consensus 513 ---------~~~~~ 517 (518) T protein:vir:78 513 ---------AERKD 517 (518) T ss_pred ---------hhccC Confidence 23334 No 16 >protein:vir:79772 Length: 648 # NCBI annotation: portal protein # Family: family:all:3222 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429612;genbank:gi:156564103;genbank:GeneID:5525537 Probab=99.91 E-value=1.8e-21 Score=134.29 Aligned_cols=511 Identities=10% Similarity=0.045 Sum_probs=255.4 Q ss_pred CCeeecCCCCccCcccc---c-hhhh-hhhhhhhhhhhhhhhcccCHHHHHHHHHcccCC---------CHHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQL---R-EPQT-SRLAGLAKEFAQHPAKGLTPAKLARILVEAEQG---------NLQAQAELFMD 66 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~---~-~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g---------~~~~~~~l~~~ 66 (526) |.|--|-.-.|...... - .|.. +...+........|. -....|+..++..+..| |+..+..+| T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~d~~-~~~~~r~g~~~~~~~~g~~~~~epp~d~~~l~~l~-- 93 (648) T protein:vir:79 17 MWRDEDDDKEPLVLEESMQLGEAPGAMPKGGGGGGSAKRDPK-MSLVKRIGLAIMDGGGGGRDFEEPEFDFNEITSAY-- 93 (648) T ss_pred hccCccccccccccccccccCCCccccCCCCcccccccccch-hHHHHHhHHHHHhhcCCccccccCCcCHHHHHHHH-- Confidence 44422222333222111 0 1100 000000000000000 00112222233333222 233333333 Q ss_pred HHhccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecC Q lcl|Aclame:pro 67 MEERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQG 145 (526) Q Consensus 67 m~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~ 145 (526) ..+++|++|+..+...+.+++|.|.+.++...+.......+..... .....+++..++ +.+.||.+.+|++.+.++ T Consensus 94 --~~np~V~~aI~iia~~ia~l~~~i~~~~~~~~~~~~~~~ll~rPn~-~~t~~~f~~~l~~~lll~GNAYveiiRd~~G 170 (648) T protein:vir:79 94 --NTEGYVRQAVDKYIEMMFKADWDFVSKNPNAVEYIRMRFTLMAEAT-QIPTNQLFIEIAEDLVKYCNVVIAKSRAKDA 170 (648) T ss_pred --hcChHHHHHHHHHHHHHhhCcceEEecCCccchhhHHHHHhhccCC-CCCHHHHHHHHHHHHHhcCCeEEEEEecCCC Confidence 4799999999999999999999999765432222222222111111 123456666655 577899999999987665 Q ss_pred Cee------------EEeeeeeecCceeEecccCCceEE-ec---cCCCCceeecCCCeEEEeecCCCCccccchhHHHH Q lcl|Aclame:pro 146 REW------------MPLAFHHRPQSWFQLNPEDQNELR-LR---DNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVL 209 (526) Q Consensus 146 g~~------------~~~~l~~r~~~~f~~~~~~~~~l~-~~---~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~ 209 (526) +.. ....+.+.++.++++..+..+.++ +. .++.....+++...|++++....+.+||.|.+..+ T Consensus 171 ~~~~~l~~~~~~~~~~v~~l~pl~p~~v~v~~d~~g~~~~Y~y~~~g~~~~~~~~~~dIIHik~~~~~d~~~GlSpi~~a 250 (648) T protein:vir:79 171 LPFQGMNVMGVGDSMPVAGYFPLNLASMKVKRDKFGMIKGWQQEQEGQDKPQKFKPEDIVHIYYKREKGRAFGTPWLLPA 250 (648) T ss_pred ccchhhhhhhhccccceeeeEeecCceeEEEEcCCCceeeeEEEecCCceeEEecCccEEEEccCCCCCCceeccHHHHH Confidence 321 234566777777766554433332 21 12223355777777666666677889999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCC-CHHHHHHHHHHHHHhhcC----eEEEecCCceEEEeecCCCChHH Q lcl|Aclame:pro 210 AWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGT-ADEEKATLLRAVTGLGHA----AAGIIPETMAIDFQQAAQGSSEP 284 (526) Q Consensus 210 ~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~-~~~e~~~l~~al~~~~~~----~~~iip~~~~ie~~~a~~~~~~~ 284 (526) ....-.-....++...|....+.|.-+.+++.+. ..+..+++.+.+.....+ ++.+.++.+.++... +..--. T Consensus 251 ~~aI~l~~aa~~~~~~fF~NGa~P~gil~~~~~~~~~e~~k~~~e~~~~~~~~~~i~gg~v~~~~~~i~~~~--s~~dlq 328 (648) T protein:vir:79 251 LDDIRALRQVEENVLRLVYRNLHPLWHVKVGLEQEGFGAEEGEVDLVRGEVENMDVEGGMVTTERVNISSIA--SNQIID 328 (648) T ss_pred HHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCccchHHHHHHHHHHHHhcccccccccccccceeeccccC--CHHHHH Confidence 9999888899999999999999999888886433 223334444444443222 223333333333221 111124 Q ss_pred HHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCCccc Q lcl|Aclame:pro 285 FLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLL-VLNRPGSPDVRR 363 (526) Q Consensus 285 ~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~-~~Nf~~~~~~~~ 363 (526) |.+..++..++|+.++..+..-.+. .+.++++.++.....+...+..-+..++..++..+.+.+. ...|........ T Consensus 329 fle~rk~~~~eIa~aFgVPP~lLG~--~~~ss~stae~~~~~~~~~i~~l~~~i~~~le~~~~~~ll~e~~l~~~l~~d~ 406 (648) T protein:vir:79 329 AKEYLKHFEQRAFTVLGVSELMMGR--GGTASRSTGDNLSSDFKDRIKALQKVMATFINEFMVKEILMEGGFDPVLNPDD 406 (648) T ss_pred HHHHHHHHHHHHHHHhCCCHhHccc--CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc Confidence 7777888899999998776544432 2345566666666666666666677777766665554432 222222222233 Q ss_pred ceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCccchh--ccc--------CCC--ccccccccccc Q lcl|Aclame:pro 364 APRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPV--LRS--------AAQ--PAILSRQHGQR 431 (526) Q Consensus 364 ~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~--~~~--------~~~--~~~~~~~~~~~ 431 (526) +.+|.|......|.+..++.+.+++..|+ ++.+++|+.+|+|+-.+++.. +.. ... +++.+...... T Consensus 407 ~ieF~~~~Llr~D~~~~a~~~~~l~~~Gi-lT~NEaR~~lGlpPi~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (648) T protein:vir:79 407 KVEFRFNEIDMDSKIKLENQAVFLYEHNA-ISEDEMRELIGRDPVDDGEGRAKMHLQMVTIAQATALAALAPTPAGGSSA 485 (648) T ss_pred eEEEeecccchhhHHHHHHHHHHHHhCCC-cCHHHHHHHhCCCCCCCCCCccccccccccchhccccccCCCCCCCCCCC Confidence 45677776667788888999999999997 999999999999875544321 100 000 00000000000 Q ss_pred cccc----cc-----ccccc-----ccccc-----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 432 VAAL----AT-----IVGPR-----YGDQQ-----------------ALDKALADLPAKDMQNQANDLLAPLLEAVNRGD 480 (526) Q Consensus 432 ~~~~----~~-----~~~~~-----~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~ 480 (526) .+.. .. .+... .+..+ .+.+++......-.+.....++..|...|.-.. T Consensus 486 ~a~~eg~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (648) T protein:vir:79 486 SASGDKKKKATDNKTKPTNQHGTKTSPKKQTNGRHVRYMQEMLLEYTTLNEAIKALIERYYQYGSKEHLKSINGSLMYTE 565 (648) T ss_pred CccccccccccCCCCCCCCCCCcCCCCccccchhhhhhhhhhhhcchhhhHHHhhHHHHHHHHhHHHHHHhhhhhheecc Confidence 0000 00 00000 00000 001111111111111111222222222221110 Q ss_pred CHHHHHHHHHHHhhc-------CCHHHHHHHHHHHHHHHHHHhHHhhhhhccC Q lcl|Aclame:pro 481 SETELLGALAEAFPD-------MDDSALTDALHRLLFAADTWGRLHGNLDRID 526 (526) Q Consensus 481 s~ee~~~~L~~l~~~-------l~~~~l~~~l~~a~~~A~l~G~~~~~~e~~d 526 (526) --+++.+.+.+.+ |+..+.++.|..+... ..|+.++..|..| T Consensus 566 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 614 (648) T protein:vir:79 566 --GRLLELTTQYWGEEVTEKVRIPFHRMTENLREEVMS--TIDKVEGVAEASD 614 (648) T ss_pred --chhHHHHHHHhhhhhhceeeeeHHHHHHHHHHHHHh--hhhhhhhhHHHHH Confidence 1112222222221 3444444544444332 3444455555555 No 17 >protein:vir:8418 Length: 409 # NCBI annotation: gp13 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID:1260067 Probab=99.91 E-value=6.5e-23 Score=142.22 Aligned_cols=398 Identities=9% Similarity=-0.015 Sum_probs=245.0 Q ss_pred CCeeecC-CCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDV-YGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMS 79 (526) Q Consensus 1 m~~~~~~-~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~ 79 (526) |+ |++. .+++...+...... +.......+. -.|+... .+.. .+-+.|.+|+. T Consensus 1 Mg-l~~~~f~~~~~~~~~~~~~-----~~~~~~~~~~----------------~~g~~v~----~~~a-l~~~~v~~~v~ 53 (409) T protein:vir:84 1 MS-LFTRIFSGPSEERTLTKIS-----GIPSPAEDWA----------------MHGDRPG----ANSA-MTLGAFYACVT 53 (409) T ss_pred Cc-hhhhhhcCCCccccccccc-----ccccccchhh----------------ccCcccc----hhhh-hccHHHHHHHH Confidence 98 6663 45543222221110 1000000000 0111100 1111 14678999999 Q ss_pred HHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeee Q lcl|Aclame:pro 80 KRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFH 154 (526) Q Consensus 80 ~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~ 154 (526) .+-..|.+++|.+.-.++... ....-+...|+..| ...++++.++ +.+.+|-+++++.+...+| .|..|. T Consensus 54 ~ia~~iA~lp~~~~~~~~~~~---~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~l~l~Gn~~~~i~~~~~~g--~~~~L~ 128 (409) T protein:vir:84 54 LLADTVASLSIDAYRKKDNVR---IPVSPAPKLLESTPYPGLTWFDWLWMLMESLAVTGNAFGYISARDEAN--RPTAIM 128 (409) T ss_pred HHHHhhhhCceEEEEecCCcc---cccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEECCCC--ceEEEE Confidence 999999999998875433221 11122333444333 3567777766 6778999999987755555 467889 Q ss_pred eecCceeEecc--cCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCC Q lcl|Aclame:pro 155 HRPQSWFQLNP--EDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGL 232 (526) Q Consensus 155 ~r~~~~f~~~~--~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~ 232 (526) +.++.++.+.. +....+........|..+++...++.++....+..+|.|.+..+....-.-....++...|...-|. T Consensus 129 ~l~p~~v~v~~~~~~~~~~~~~~~~~~g~~~~~~dvih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~ 208 (409) T protein:vir:84 129 PIHPDCIHVTDAKDEDGDWIEPVYRIDGKVVPNHRIMHIKRYPVAGCALGMSPIEKAASAIGLGLAAERYGLRWFRDSAN 208 (409) T ss_pred EEcCceeEEEEcCCCcceEEEEEecCCceEEchhhEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCC Confidence 99988776543 3333434333445567788888877777777777899999999998888888888999999999999 Q ss_pred ceEEEecCCCCCHHHHHHHHHHHHHhhcCe--EEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccc Q lcl|Aclame:pro 233 PIRLGKYPPGTADEEKATLLRAVTGLGHAA--AGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTS 310 (526) Q Consensus 233 P~~vgk~~~~~~~~e~~~l~~al~~~~~~~--~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~ 310 (526) |--+.+++...++++++++.+.......++ .+|++.|++++-++.+. .-..|.+..++..++|++++..+.--.+.. T Consensus 209 p~gil~~~~~l~~e~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~~~~~~-~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~ 287 (409) T protein:vir:84 209 PSGILSSDADLTPDQVKQTQKQWIQSHHNRRLPAVMSAGIKWQSVSITP-NESQFLETRSFQRSEIAMWFRIPPHMIGDV 287 (409) T ss_pred ccEEEecCCCCCHHHHHHHHHHHHHHhccCCCeeecCCCceEEEccCCh-hHHHHHHHHHHHHHHHHHHhCCCHHHhCCC Confidence 999999998889999888888777765544 68889998877765432 223577778888899999976654333221 Q ss_pred cccchhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHh Q lcl|Aclame:pro 311 QSGGGAFA-LGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVN 389 (526) Q Consensus 311 ~~~~gS~a-~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~ 389 (526) ++++.+++ ..+........-+.--++.|+..||+.|.+ ..+-+|.++.-...|.+.+++++.++++ T Consensus 288 ~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~L~~-------------g~~i~fd~~~l~~~d~~~~~~~~~~~~~ 354 (409) T protein:vir:84 288 EKSTSWGTGIEEQGINFVRHTLLPWLRCIEQALDTFLPR-------------GQFVKFNVDGLMRGDVTARFTAYQMGLQ 354 (409) T ss_pred CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------CCeEEEechhhhccCHHHHHHHHHHHHh Confidence 11111112 122222334556777888899999876411 1233454555556799999999999999 Q ss_pred CCCcCCHHHHHHHhCCCCCCccchhcccCCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 390 VGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQ 447 (526) Q Consensus 390 ~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (526) .|+ ++.+++|+.+|+|+-++++....+....+... ......... ..+........ T Consensus 355 ~G~-~t~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~-~~~~~~~~~-~~~~~~~~gn~ 409 (409) T protein:vir:84 355 NGI-WSVNEVRAWEDAPPIPEGDIHLQPMNFVPLGY-VPPEEPAQE-PQPNSATEGNK 409 (409) T ss_pred CCC-cCHHHHHHHhCCCCCCCcceeeeccccccccc-CCccccCcC-CCCCCccCCCC Confidence 997 99999999999998777666554322111111 001000000 00000111111 No 18 >protein:vir:4337 Length: 434 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061500;genbank:gi:9635589;genbank:GeneID:1262858 Probab=99.90 E-value=1.5e-23 Score=145.74 Aligned_cols=419 Identities=12% Similarity=0.028 Sum_probs=245.6 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccC-HHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLT-PAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMS 79 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~ 79 (526) |++.++..=.+. ...+... +.+ +... ...++ +.-|...+- +.......+-.+-..+-+.|.+|+. T Consensus 1 ~~~~l~~~~~~~----~~~~~~~-~~~----~~~~-~~~~~~~~~~~~~~g----~~~~~g~~v~~~~al~~~~V~~~i~ 66 (434) T protein:vir:43 1 MSKSLGKVLSSA----TSAPRSS-LFG----WGGK-TIRLTDGAFWSQFLG----RESSSGKKVTVDKAMKLSAVWACVR 66 (434) T ss_pred Cccchhhhhhhc----ccccchh-hhc----cccc-ccccCchHHHHHHhc----CCccCCceechhhhhccHHHHHHHH Confidence 888765422111 1111110 110 1000 01111 222222211 1110100111111125788999999 Q ss_pred HHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeee Q lcl|Aclame:pro 80 KRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFH 154 (526) Q Consensus 80 ~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~ 154 (526) .+-..|.+++|.+.-...+....+...--+...|+..| ...++++.++ +.+.+|-+++.+.+. +|. |..|. T Consensus 67 ~ia~~ia~lp~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~~~--~G~--~~~L~ 142 (434) T protein:vir:43 67 LISTSVAGLPLGVYERKADGSRVDARSFPLYDVVHNSPNDDMTAFQFWQAMVASMLLWGNAYAEIRRA--AGR--PAALD 142 (434) T ss_pred HHHHhhhhCceEEEEEcCCCccccccccHHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeC--CCc--EEEEE Confidence 99999999999985322111111111122334443322 2345666555 578899999888653 454 56899 Q ss_pred eecCceeEecccCCceEEeccCCCCc--eeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCC Q lcl|Aclame:pro 155 HRPQSWFQLNPEDQNELRLRDNSPAG--EALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGL 232 (526) Q Consensus 155 ~r~~~~f~~~~~~~~~l~~~~~~~~g--~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~ 232 (526) +.++.++.+..+..+.+.++.....| ..+++...++.++. ..+..+|.|.+..+....-.-....++-..|...-+. T Consensus 143 ~l~p~~v~~~~~~~g~~~y~~~~~~g~~~~~~~~eVih~~~~-~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~ 221 (434) T protein:vir:43 143 FLLPSRVDLECDENGRLKYFYTTKKGARREIERTNMLHIPAF-TLDGRIGLSAIRYGVDVFGSVMSAEDAANGTFKNGLL 221 (434) T ss_pred EEcCcceEEEEcCCCeEEEEEEecCceEEEEccccEEEecCc-CCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCC Confidence 99999888776666666655443333 56888877666655 4456889999999999888888888888899999899 Q ss_pred ceEEEecCCCCCHHHHHHHHHHHHHhhc----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcc Q lcl|Aclame:pro 233 PIRLGKYPPGTADEEKATLLRAVTGLGH----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTST 308 (526) Q Consensus 233 P~~vgk~~~~~~~~e~~~l~~al~~~~~----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~ 308 (526) |--+.+++...++++++.+.+.+.++.. +..+|+|.|++++-++.+ ..-..|.+..++..++|++++..+.--.+ T Consensus 222 ~~gil~~~~~l~~e~~~~~r~~~~~~~g~~nag~~~vl~~g~~~~~l~~~-~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg 300 (434) T protein:vir:43 222 PTVAFKVDRILQPAQREEFREYVKSVSGAMNSGRSPVLEQGITPETIGIN-PVDAQLLETREHGVIEICRWFGVPPWMIG 300 (434) T ss_pred cceEEecCCCCCHHHHHHHHHHHHHhcCccccCCccccCCCceEEEccCC-hhHHHHHHHHHHHHHHHHHHhCCCHHHhC Confidence 9999999998888888888777776532 346889999987776533 22335778889999999999877654433 Q ss_pred cccccchhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHH Q lcl|Aclame:pro 309 TSQSGGGAFAL-GQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPAL 387 (526) Q Consensus 309 ~~~~~~gS~a~-~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l 387 (526) ..+++..+++. .+........-+...+..|+..||+.|+..--..+ .+.+|.++.....|.+.+++.+.++ T Consensus 301 ~~~~~~~~~s~~e~~~~~f~~~~L~P~~~~ie~~ln~kL~~~~~~~~--------~~~~fd~~~llr~d~~~r~~~~~~~ 372 (434) T protein:vir:43 301 QTDKGSNWGTGLEQQMLAFLTFSISSITNQIQQCVNKRLLTAPERIR--------YYAEFSLEGFLKADSAGRAAWYSTM 372 (434) T ss_pred CCcCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhcC--------ceEEEechhhhccCHHHHHHHHHHH Confidence 22221111222 22233334566888889999999987764321111 1223333344457899999999999 Q ss_pred HhCCCcCCHHHHHHHhCCCCCCccchhcccCCCccccccccccccccc--ccccccccccccc Q lcl|Aclame:pro 388 VNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAAL--ATIVGPRYGDQQA 448 (526) Q Consensus 388 ~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 448 (526) +..|+ ++.+++|+.+|+|+-+.++....+..-.+............. +.......+.++. T Consensus 373 ~~~G~-~T~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (434) T protein:vir:43 373 AQNGF-MTRNEGRRKENLPELPGGDILTVQSNLVPIDQLGQSNKSQAVRAALMNWFSQPEPQE 434 (434) T ss_pred HhCCC-cCHHHHHHHhCCCCCCCCCeEeeccCccchhhhhccCCCcchhhhhhccCCCCCCCC Confidence 99998 899999999999987666655433221111000000000000 0000011111111 No 19 >protein:vir:105064 Length: 421 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006584;genbank:gi:46402090;genbank:GeneID:2777930 Probab=99.90 E-value=3.7e-23 Score=143.56 Aligned_cols=406 Identities=10% Similarity=-0.018 Sum_probs=239.0 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |. +-+..++ + +++.+.. ..|.. .+.....+.......+-.+...+-+.|.+|+.. T Consensus 1 m~-~~~~~~~----~--~~~~s~~-----~~w~~-------------~~~~~~~~~~~~g~~vt~~~al~~~~v~~~i~~ 55 (421) T protein:vir:10 1 MF-IPQMFEG----K--KRSVSGG-----GFWEA-------------MLGGVRSSHSKAGVMITPETALALSAVRACVTL 55 (421) T ss_pred CC-Ccchhcc----c--ccccCcc-----hhhHH-------------HhhhhccCcccCCceechHHhhccHHHHHHHHH Confidence 44 1111111 1 1111100 11111 100000000000001111122367899999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeee Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHH 155 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~ 155 (526) +-..|.+++|.+.-...+....+....-+...|+..| ...++++.+. +.+.+|.+++++++..+| .|..|.+ T Consensus 56 Ia~~iA~lp~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G---~~~~L~~ 132 (421) T protein:vir:10 56 LAESVAQLPVELYRRDKNGGRQRATDHPIYDLIHSQPNKKDTSFEYFEQQQGLLGLEGNCYSIIDRDGKG---YPKELIP 132 (421) T ss_pred HHHhhccCceEEEEEcCCCceeecccchHHHHHhhcccCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCC---cEEEEEE Confidence 9999999999985322111111111111333343323 2456777655 678899999999875443 4678999 Q ss_pred ecCceeEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceE Q lcl|Aclame:pro 156 RPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIR 235 (526) Q Consensus 156 r~~~~f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~ 235 (526) .++.++++..+..+.+.++. ...|..+|....++.++. ..+..+|.|.+..+....-.-....++...|...-+.|-- T Consensus 133 l~~~~v~v~~~~~g~~~y~~-~~~g~~~~~~eiih~~~~-~~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~g 210 (421) T protein:vir:10 133 INPKKVIVLKGPDGMPYYEI-PEIGETLPMRMMHHVKVF-SLDGYIGSSPIQTNADVLGLNLAVEEHASAVFRRGATMSG 210 (421) T ss_pred ecCceEEEEECCCceEEEEE-cCCCcEEchhhEEEecCc-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccE Confidence 99988887665555444443 334556777665555544 4566899999999998888888888888899999999988 Q ss_pred EEecCCCC----CHHHHHHHHHHHHHhhc-----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhh Q lcl|Aclame:pro 236 LGKYPPGT----ADEEKATLLRAVTGLGH-----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLT 306 (526) Q Consensus 236 vgk~~~~~----~~~e~~~l~~al~~~~~-----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtlt 306 (526) +.+++.+. ++++++++.+.+.+.-+ ...++++.|++++-++.+. .-..|.+..++..++|++++..+.-- T Consensus 211 il~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~-~d~q~~e~~~~~~~~Ia~~fgVPp~~ 289 (421) T protein:vir:10 211 VIERPKEAPAIKSQEKIDQLLAKWTDRYSGINNMFSVALLQEGMSYKQMSQDN-EKAQLLQSRQWGVEEVCRLYKIPPHM 289 (421) T ss_pred EEEecCccCccCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEecCCCh-hHHHHHHHHHHhHHHHHHHhCCCHHH Confidence 88887654 67888888877776532 3578889999887776433 22357778889999999998776533 Q ss_pred cccccccchhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHH Q lcl|Aclame:pro 307 STTSQSGGGAFALGQVHN-EVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIP 385 (526) Q Consensus 307 t~~~~~~~gS~a~~~vh~-~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~ 385 (526) .+. .+.++++..+-+. .....-+.-.++.|+..||+.|+.+--. ...+.+|..+.....|.+.+++.+. T Consensus 290 lg~--~~~~t~sn~e~~~~~f~~~tl~P~~~~ie~~ln~kL~~~~~~--------~~~~v~fd~~~l~~~d~~~~~~~~~ 359 (421) T protein:vir:10 290 VQM--LAKATNNNIEHQGLQFVMYTLLAWLKRHEGALQRDLLLPSER--------RDLYIEFNVSGLLRGDQKSRYESYA 359 (421) T ss_pred cCC--CcCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccc--------CCeEEEEechhhhccCHHHHHHHHH Confidence 322 2234554444333 3445677888889999998877643211 1112334344444578999999999 Q ss_pred HHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccccccchHHHHHHH Q lcl|Aclame:pro 386 ALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALADL 456 (526) Q Consensus 386 ~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (526) ++++.|+ ++.+++|+.+|+|+.+.++..+.+..........++... +........++.+.+. T Consensus 360 ~~~~~G~-~T~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~~~~~~~--------~~~~~~~e~d~~~~~~ 421 (421) T protein:vir:10 360 LGRQWGW-LSVNDIRRMENLPPIAGGDKYLTPLNMVDSAQIIPGDKK--------PTAQQMAEIDTILSRT 421 (421) T ss_pred HHHhCCC-cCHHHHHHHhCCCCCCCcceeeeccccccccccccCCCC--------cccccCcccccccccC Confidence 9999997 999999999999988777766543221111110011000 0000111112211111 No 20 >protein:vir:100150 Length: 437 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneID:2744197 Probab=99.90 E-value=5.4e-23 Score=142.66 Aligned_cols=415 Identities=10% Similarity=-0.040 Sum_probs=238.1 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhh---hhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQH---PAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAE 77 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~ 77 (526) |- ++....+..+...+..| |...-.+.-+ ..+- .+.......+..+-..+-+.|.+| T Consensus 1 ~~----------------~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~-~~~~---~~~~~~g~~v~~~~al~~~~v~~c 60 (437) T protein:vir:10 1 MK----------------QGKQRALGRIKSSFLKWLGVPISLTDGSFW-SAWG---GMGSSSGETVTADSALQLSAVWSC 60 (437) T ss_pred CC----------------cchhhhhhhhHHhhhhhcCCcccCCchhHH-Hhhc---ccccCCCceechHhhhccHHHHHH Confidence 22 22222222221111111 1111111111 1110 000000000111111257889999 Q ss_pred HHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEee Q lcl|Aclame:pro 78 MSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLA 152 (526) Q Consensus 78 l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~ 152 (526) +..+-..|.+++|.+.-...+.........-+...|+..| ...++++.++ +.+.+|.++++++++ +| .|.. T Consensus 61 i~~Ia~~ia~lp~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~--~g--~~~~ 136 (437) T protein:vir:10 61 VRLIAETIATLPLNLYQTKPDGTRVLAKQHRLYTVIHSQPNAENTAAEFWEVIVASMLLWGNGYARKLRS--AG--VLIG 136 (437) T ss_pred HHHHHHHHhhCceeEEEEcCCCceeeccccHHHHHhhccCCcCCCHHHHHHHHHHHHhhcCCeEEEEEec--CC--cEEE Confidence 9999999999999885433221111111112223343323 3456666666 568899999999775 34 4568 Q ss_pred eeeecCceeEecccCCceEEecc--CCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHc Q lcl|Aclame:pro 153 FHHRPQSWFQLNPEDQNELRLRD--NSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIY 230 (526) Q Consensus 153 l~~r~~~~f~~~~~~~~~l~~~~--~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~ 230 (526) |.+.++.++.+.....+.+.+.- ..+....+++...++.++. ..+.++|.|.+..+...+-.-....++...|.+.- T Consensus 137 L~~l~p~~v~i~~~~~g~~~y~~~~~~g~~~~~~~~dIih~r~~-~~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng 215 (437) T protein:vir:10 137 LELMLPQRTTVKRLTSGALQYTYRNVDGTVSTLAEDDVFHVRGF-SLDGLMGLTPIQYAREVLGNSTAANKTSASVFRNG 215 (437) T ss_pred EEEEcCcceEEEECCCCeEEEEEEecCceEEEEccccEEEecCc-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 89999988877665444444432 2233345777776655544 45668999999999988888888889999999999 Q ss_pred CCceEEEecCCCCCHHHHHHHHHHHHHhhc-----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhh Q lcl|Aclame:pro 231 GLPIRLGKYPPGTADEEKATLLRAVTGLGH-----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTL 305 (526) Q Consensus 231 G~P~~vgk~~~~~~~~e~~~l~~al~~~~~-----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtl 305 (526) +.|--|.+++...++++++++.+.+.+.-. ...+|++.|++++-++.+. ....|.+..++..++|++++..+.- T Consensus 216 ~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~-~d~q~~e~~~~~~~~Ia~~fgVPp~ 294 (437) T protein:vir:10 216 LRPSGVLSTDQILQKEKRAEIRTDLAEQFGGAMQAGKTMVLEAGMKYQAITMNP-GDVQLLETRAFNIEEICRWYRVPPF 294 (437) T ss_pred CCccEEEEcCCCCCHHHHHHHHHHHHHHhcCccccCcceeccCCceEEeccCCh-hhHHHHHHHHHHHHHHHHHhCCCHH Confidence 999999999988899998888888876532 2478899998877665432 2234777888999999999876654 Q ss_pred hcccccccchhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHH Q lcl|Aclame:pro 306 TSTTSQSGGGAFAL-GQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSI 384 (526) Q Consensus 306 tt~~~~~~~gS~a~-~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~ 384 (526) -.+..+++...++. .+........-+...+..|+..||+.|++.-- ....+.+|.++..-..|.+.+++++ T Consensus 295 ~lg~~~~~t~~~sn~e~~~~~f~~~tl~P~~~~ie~~l~~kll~~~e--------~~~~~~~fd~~~ll~~d~~~r~~~~ 366 (437) T protein:vir:10 295 MVGHSEKSTSWGTGIEQQTLGFLTFTLRPWLTRIEQAARRSLLRPGE--------RDQFYAEFSVEGLLRADSAGRAAFY 366 (437) T ss_pred HhCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc--------cCceEEEEechhhhccCHHHHHHHH Confidence 44332221111222 22223345566778888999999887764311 1112223333334457899999999 Q ss_pred HHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccc------cccccccccccccccchHHH Q lcl|Aclame:pro 385 PALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRV------AALATIVGPRYGDQQALDKA 452 (526) Q Consensus 385 ~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 452 (526) .++++.|+ ++.+++|+.+|+|+-+.+++.+.......+........+ +.......+.... ...+. T Consensus 367 ~~~~~~G~-~T~NE~R~~~gl~pi~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~ 437 (437) T protein:vir:10 367 STMTQNGL-MTRDECRAKENLPPMGGNAAVLTVQSALLPIDKLGEHTTATAAQDALKAWLYQEEKTR--ATQER 437 (437) T ss_pred HHHHhCCC-cCHHHHHHHhCCCCCCCCcceEeecCcccchhhccCcCCCcchhccccccCCCCCCCC--ccccC Confidence 99999998 999999999999886656554432221111111000000 0000000000000 00000 No 21 >protein:vir:10362 Length: 432 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858954;genbank:gi:32128419;genbank:GeneID:2648396 Probab=99.90 E-value=4.9e-23 Score=142.92 Aligned_cols=416 Identities=15% Similarity=0.068 Sum_probs=237.4 Q ss_pred CC--eeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHH Q lcl|Aclame:pro 1 MA--QIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEM 78 (526) Q Consensus 1 m~--~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l 78 (526) |+ +..+-.|+.-. ....+.....++... ..|... +...+......++. .. ..+-..+-+.|.+|+ T Consensus 1 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~s~~g~-~v------~~~~al~~~~V~~~i 67 (432) T protein:vir:10 1 MPDEKKLGLLGQLKA--MFVPPDPVDIGGGQT---FTPVNA-TARDLGIIISDTGA-AV------NADAIMRLDAVAACV 67 (432) T ss_pred CCCCcccchhhhhHh--hcCCccccccccccc---cccCcc-hhhhhcccccccCc-cc------chhhhhcchHHHHHH Confidence 22 11111222110 011111111111000 000000 00000000111111 11 111122578999999 Q ss_pred HHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeee Q lcl|Aclame:pro 79 SKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAF 153 (526) Q Consensus 79 ~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l 153 (526) ..+-..|.+++|.|.-...+.. .+....-+...|+..| ...++++.++ +.+.+|.+++++++. +| .+..| T Consensus 68 ~~Ia~~ia~lp~~~y~~~~~g~-~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~--~g--~~~~L 142 (432) T protein:vir:10 68 KLVSQAIAAMPLTMYMRTPDGR-KEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT--DG--RIESL 142 (432) T ss_pred HHHHHhhhhCceeEEEecCCCc-ccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec--CC--cEEEE Confidence 9999999999999853322211 1111122333443322 2445666555 678899999999874 44 35689 Q ss_pred eeecCceeEecccCCceEEecc--CCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcC Q lcl|Aclame:pro 154 HHRPQSWFQLNPEDQNELRLRD--NSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYG 231 (526) Q Consensus 154 ~~r~~~~f~~~~~~~~~l~~~~--~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G 231 (526) .+.++.+++...+..+.+.++. ..+....++....+++++.. .+..+|.|.+..+...+-.-....++...|...-+ T Consensus 143 ~~l~~~~v~v~~~~~g~~~y~~~~~~g~~~~~~~~~iih~~~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~ 221 (432) T protein:vir:10 143 QYLANDRLTITTDTKGNTAYRYRRTDGQMIDIPKQQIWKIMGYS-LDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQ 221 (432) T ss_pred EEEcCCceEEEEcCCCcEEEEEEecCceEEEEcCccEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCC Confidence 9999988877665554454443 33334567777776665543 44578999999999888887888888888999999 Q ss_pred CceEEEecCCCCCHHHHHHHHHHHHHhhc-CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccc Q lcl|Aclame:pro 232 LPIRLGKYPPGTADEEKATLLRAVTGLGH-AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTS 310 (526) Q Consensus 232 ~P~~vgk~~~~~~~~e~~~l~~al~~~~~-~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~ 310 (526) .|--|.+++...++++++++.+.+....+ +..++++.|++++-++.+. .-..|.+..++...+|++++..+.--.+.. T Consensus 222 ~~~gil~~~~~l~~e~~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~-~d~q~le~~~~~~~~Ia~afgVPp~~lg~~ 300 (432) T protein:vir:10 222 LQSVYYQIDRFLTDDQYDSFAKKVSGSVEAGRAPLLEGGMDVKSLGLNP-VDAQLLQSRQYSVESICRFFGVPPSMIGHS 300 (432) T ss_pred CcceEEecCCCCCHHHHHHHHHHHhhhhhCCCceecCCCceEEEccCCh-HHHHHHHHHHHHHHHHHHHhCCCHHHcCCc Confidence 99999999998999999999888876543 4578899999887776432 223477778899999999986654333222 Q ss_pred cccchhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecC--ccccCHHHHHHHH Q lcl|Aclame:pro 311 QSGGGAFALGQ----VHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDL--REQADITSMAQSI 384 (526) Q Consensus 311 ~~~~gS~a~~~----vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~--~e~edl~~~a~~~ 384 (526) + .|+++.+. ........-+.-.++.|+..||+.|+.+--. ... +|+|+. .-..|.+++++.+ T Consensus 301 ~--~~t~~~~sn~e~~~~~f~~~tl~P~~~~ie~~ln~kL~~~~~~--------~~~--~~~fd~~~ll~~d~~~r~~~~ 368 (432) T protein:vir:10 301 S--AGTTSWGSGIESQQLGFLSMTLSPWLRRIEQSIALNLLSPAER--------RRY--FADFDTSALLRADSAARSSYY 368 (432) T ss_pred c--CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccc--------Cce--EEEeechhhhccCHHHHHHHH Confidence 2 22332221 1222333567778888888888877643211 111 345543 3457899999999 Q ss_pred HHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccccccchHHH Q lcl|Aclame:pro 385 PALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKA 452 (526) Q Consensus 385 ~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (526) .++++.|+ ++.+++|+.+|+|+.++++..+.......+... .+....... ..+ ....++..+.. T Consensus 369 ~~~~~~G~-~T~NE~R~~~glppi~g~~~~~~~~~~~~pl~~-~~~~~~~~~-~~~-~~~~~~~~~~~ 432 (432) T protein:vir:10 369 SQLVNNGL-MTRDEAREIEGLPKLGGNAAVLTVQSAMVPLDS-IGLQASPEP-ASG-LGNQQQDKVSK 432 (432) T ss_pred HHHHhCCC-CCHHHHHHHhCCCCCCCCcceEeecCcccchhh-hcccCCCCC-CCC-CCCcccccccC Confidence 99999998 999999999999988766554432211111111 011110000 000 01111111111 No 22 >protein:vir:102855 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338135;genbank:gi:77020228;genbank:GeneID:3703764 Probab=99.90 E-value=4.8e-23 Score=142.94 Aligned_cols=413 Identities=12% Similarity=0.058 Sum_probs=247.3 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+ |+|.-.+-+.+..-..+++..+......+..+. |.++. |- .+......+.+.|.+|+.. T Consensus 1 M~-~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~--g~~~~-----------~~-----~v~~~~al~~~~v~~~i~~ 61 (432) T protein:vir:10 1 MK-IVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWL--GISPS-----------TI-----SVKGKNALKVATVFACIKI 61 (432) T ss_pred CC-hHHHHHHhcCccccCcccccccCCchHHHHHHh--CCCcC-----------cc-----ccchhhhhccHHHHHHHHH Confidence 77 666543322221111111111111111111110 11110 00 0111112257899999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeee Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHH 155 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~ 155 (526) +-..|.+++|.|.-..++.. .+....-+...|+..| ...++++.++ +.+.+|.++++++++..| .+..|.+ T Consensus 62 ia~~ia~lp~~~~~~~~~~~-~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G---~~~~L~~ 137 (432) T protein:vir:10 62 LSESVSKLPLKIYQEDEYGI-QRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKG---KVQALWP 137 (432) T ss_pred HHHhhccCceEEEEecCCce-eeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCC---cEEEEEE Confidence 99999999999864332211 1111122333343222 3456777666 468899999999886544 2678999 Q ss_pred ecCceeEecccCCc------eEEec-cCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 156 RPQSWFQLNPEDQN------ELRLR-DNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLE 228 (526) Q Consensus 156 r~~~~f~~~~~~~~------~l~~~-~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E 228 (526) .++.++.+..+... ...+. ..++....+++...++.++....+..+|.|.+..+....-.-....++...|.. T Consensus 138 i~~~~v~v~~d~~~~~~~~~~~~y~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ 217 (432) T protein:vir:10 138 IDASKVTVYIDDVGLLNSKTKMWYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYK 217 (432) T ss_pred EcCceeEEEEcCcccccccceEEEEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh Confidence 99987766443221 12222 222333557888776666655567788999999999888888888889999999 Q ss_pred HcCCceEEEecCCCCCHHHHHHHHHHHHHhh-----cCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhch Q lcl|Aclame:pro 229 IYGLPIRLGKYPPGTADEEKATLLRAVTGLG-----HAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGG 303 (526) Q Consensus 229 ~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~-----~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGq 303 (526) .-+.|--|.+++...++++++++.+.+.+.- +...+|+|.|++++-+..+. .-..|.+..++..++|++++..+ T Consensus 218 ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~-~d~q~~e~~~~~~~~Ia~~fgVP 296 (432) T protein:vir:10 218 QGLQVKGLVQYVGDLNEDAKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNM-SDAQFLENTELTIRQIATAFGIK 296 (432) T ss_pred ccCCccEEEEcCCCCCHHHHHHHHHHHHHHhcccccCCcceecCCCceEEEccCCh-hHHHHHHHHHHHHHHHHHHhCCC Confidence 9999999999998888888888888877653 23578999999887776432 22356777888999999998776 Q ss_pred hhhcccccccchhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHH Q lcl|Aclame:pro 304 TLTSTTSQSGGGAFALGQVHNE-VRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQ 382 (526) Q Consensus 304 tltt~~~~~~~gS~a~~~vh~~-v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~ 382 (526) .-..+. ...|+++..+-+.. ....-+...++.|+..||+.|+..--. . ...+.+|.++.....|.+.+++ T Consensus 297 ~~~lg~--~~~~~~s~~e~~~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~-~------~g~~~~fd~~~l~~~d~~~~~~ 367 (432) T protein:vir:10 297 MHQLND--LSKATLNNIEQQQQQFYTDTLQATLTMYEQEMTYKLFLDSEL-D------KGFYSKFNVDAILRADIKTRYE 367 (432) T ss_pred HHHhCC--CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhc-C------CCcEEEeechhhhcCCHHHHHH Confidence 544432 23355554444433 345677889999999999888743211 1 1122344444555678999999 Q ss_pred HHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccc-ccccccccccc Q lcl|Aclame:pro 383 SIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALA-TIVGPRYGDQQ 447 (526) Q Consensus 383 ~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 447 (526) .+.++++.|+ ++.+++|+.+|+|+-+.++....+....+..........+... ..........+ T Consensus 368 ~~~~~~~~G~-~t~NE~R~~~g~~pi~ggD~~~~~~n~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 368 AYRTGIQGGF-LKPNEARSKEDLPPEAGGDRLLVNGNMLPIDMAGQAYLKGGDTNGEVSKEGNEGN 432 (432) T ss_pred HHHHHHhCCC-cCHHHHHHHhCCCCCCCCCeEeecccccchhhccccccCCCCCCCCCCCCCCCCC Confidence 9999999998 9999999999999876666554433221111100000000000 00000000111 No 23 >protein:vir:105002 Length: 432 # NCBI annotation: putative phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459967;genbank:gi:85701382;genbank:GeneID:3882143 Probab=99.90 E-value=4.8e-23 Score=142.94 Aligned_cols=413 Identities=12% Similarity=0.058 Sum_probs=247.3 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+ |+|.-.+-+.+..-..+++..+......+..+. |.++. |- .+......+.+.|.+|+.. T Consensus 1 M~-~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~--g~~~~-----------~~-----~v~~~~al~~~~v~~~i~~ 61 (432) T protein:vir:10 1 MK-IVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWL--GISPS-----------TI-----SVKGKNALKVATVFACIKI 61 (432) T ss_pred CC-hHHHHHHhcCccccCcccccccCCchHHHHHHh--CCCcC-----------cc-----ccchhhhhccHHHHHHHHH Confidence 77 666543322221111111111111111111110 11110 00 0111112257899999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeee Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHH 155 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~ 155 (526) +-..|.+++|.|.-..++.. .+....-+...|+..| ...++++.++ +.+.+|.++++++++..| .+..|.+ T Consensus 62 ia~~ia~lp~~~~~~~~~~~-~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G---~~~~L~~ 137 (432) T protein:vir:10 62 LSESVSKLPLKIYQEDEYGI-QRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKG---KVQALWP 137 (432) T ss_pred HHHhhccCceEEEEecCCce-eeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCC---cEEEEEE Confidence 99999999999864332211 1111122333343222 3456777666 468899999999886544 2678999 Q ss_pred ecCceeEecccCCc------eEEec-cCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 156 RPQSWFQLNPEDQN------ELRLR-DNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLE 228 (526) Q Consensus 156 r~~~~f~~~~~~~~------~l~~~-~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E 228 (526) .++.++.+..+... ...+. ..++....+++...++.++....+..+|.|.+..+....-.-....++...|.. T Consensus 138 i~~~~v~v~~d~~~~~~~~~~~~y~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ 217 (432) T protein:vir:10 138 IDASKVTVYIDDVGLLNSKTKMWYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYK 217 (432) T ss_pred EcCceeEEEEcCcccccccceEEEEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh Confidence 99987766443221 12222 222333557888776666655567788999999999888888888889999999 Q ss_pred HcCCceEEEecCCCCCHHHHHHHHHHHHHhh-----cCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhch Q lcl|Aclame:pro 229 IYGLPIRLGKYPPGTADEEKATLLRAVTGLG-----HAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGG 303 (526) Q Consensus 229 ~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~-----~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGq 303 (526) .-+.|--|.+++...++++++++.+.+.+.- +...+|+|.|++++-+..+. .-..|.+..++..++|++++..+ T Consensus 218 ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~-~d~q~~e~~~~~~~~Ia~~fgVP 296 (432) T protein:vir:10 218 QGLQVKGLVQYVGDLNEDAKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNM-SDAQFLENTELTIRQIATAFGIK 296 (432) T ss_pred ccCCccEEEEcCCCCCHHHHHHHHHHHHHHhcccccCCcceecCCCceEEEccCCh-hHHHHHHHHHHHHHHHHHHhCCC Confidence 9999999999998888888888888877653 23578999999887776432 22356777888999999998776 Q ss_pred hhhcccccccchhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHH Q lcl|Aclame:pro 304 TLTSTTSQSGGGAFALGQVHNE-VRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQ 382 (526) Q Consensus 304 tltt~~~~~~~gS~a~~~vh~~-v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~ 382 (526) .-..+. ...|+++..+-+.. ....-+...++.|+..||+.|+..--. . ...+.+|.++.....|.+.+++ T Consensus 297 ~~~lg~--~~~~~~s~~e~~~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~-~------~g~~~~fd~~~l~~~d~~~~~~ 367 (432) T protein:vir:10 297 MHQLND--LSKATLNNIEQQQQQFYTDTLQATLTMYEQEMTYKLFLDSEL-D------KGFYSKFNVDAILRADIKTRYE 367 (432) T ss_pred HHHhCC--CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhc-C------CCcEEEeechhhhcCCHHHHHH Confidence 544432 23355554444433 345677889999999999888743211 1 1122344444555678999999 Q ss_pred HHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccc-ccccccccccc Q lcl|Aclame:pro 383 SIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALA-TIVGPRYGDQQ 447 (526) Q Consensus 383 ~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 447 (526) .+.++++.|+ ++.+++|+.+|+|+-+.++....+....+..........+... ..........+ T Consensus 368 ~~~~~~~~G~-~t~NE~R~~~g~~pi~ggD~~~~~~n~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 368 AYRTGIQGGF-LKPNEARSKEDLPPEAGGDRLLVNGNMLPIDMAGQAYLKGGDTNGEVSKEGNEGN 432 (432) T ss_pred HHHHHHhCCC-cCHHHHHHHhCCCCCCCCCeEeecccccchhhccccccCCCCCCCCCCCCCCCCC Confidence 9999999998 9999999999999876666554433221111100000000000 00000000111 No 24 >protein:vir:107605 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338186;genbank:gi:77020175;genbank:GeneID:3703736 Probab=99.90 E-value=4.8e-23 Score=142.94 Aligned_cols=413 Identities=12% Similarity=0.058 Sum_probs=247.3 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+ |+|.-.+-+.+..-..+++..+......+..+. |.++. |- .+......+.+.|.+|+.. T Consensus 1 M~-~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~--g~~~~-----------~~-----~v~~~~al~~~~v~~~i~~ 61 (432) T protein:vir:10 1 MK-IVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWL--GISPS-----------TI-----SVKGKNALKVATVFACIKI 61 (432) T ss_pred CC-hHHHHHHhcCccccCcccccccCCchHHHHHHh--CCCcC-----------cc-----ccchhhhhccHHHHHHHHH Confidence 77 666543322221111111111111111111110 11110 00 0111112257899999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeee Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHH 155 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~ 155 (526) +-..|.+++|.|.-..++.. .+....-+...|+..| ...++++.++ +.+.+|.++++++++..| .+..|.+ T Consensus 62 ia~~ia~lp~~~~~~~~~~~-~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G---~~~~L~~ 137 (432) T protein:vir:10 62 LSESVSKLPLKIYQEDEYGI-QRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKG---KVQALWP 137 (432) T ss_pred HHHhhccCceEEEEecCCce-eeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCC---cEEEEEE Confidence 99999999999864332211 1111122333343222 3456777666 468899999999886544 2678999 Q ss_pred ecCceeEecccCCc------eEEec-cCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 156 RPQSWFQLNPEDQN------ELRLR-DNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLE 228 (526) Q Consensus 156 r~~~~f~~~~~~~~------~l~~~-~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E 228 (526) .++.++.+..+... ...+. ..++....+++...++.++....+..+|.|.+..+....-.-....++...|.. T Consensus 138 i~~~~v~v~~d~~~~~~~~~~~~y~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ 217 (432) T protein:vir:10 138 IDASKVTVYIDDVGLLNSKTKMWYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYK 217 (432) T ss_pred EcCceeEEEEcCcccccccceEEEEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh Confidence 99987766443221 12222 222333557888776666655567788999999999888888888889999999 Q ss_pred HcCCceEEEecCCCCCHHHHHHHHHHHHHhh-----cCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhch Q lcl|Aclame:pro 229 IYGLPIRLGKYPPGTADEEKATLLRAVTGLG-----HAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGG 303 (526) Q Consensus 229 ~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~-----~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGq 303 (526) .-+.|--|.+++...++++++++.+.+.+.- +...+|+|.|++++-+..+. .-..|.+..++..++|++++..+ T Consensus 218 ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~-~d~q~~e~~~~~~~~Ia~~fgVP 296 (432) T protein:vir:10 218 QGLQVKGLVQYVGDLNEDAKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNM-SDAQFLENTELTIRQIATAFGIK 296 (432) T ss_pred ccCCccEEEEcCCCCCHHHHHHHHHHHHHHhcccccCCcceecCCCceEEEccCCh-hHHHHHHHHHHHHHHHHHHhCCC Confidence 9999999999998888888888888877653 23578999999887776432 22356777888999999998776 Q ss_pred hhhcccccccchhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHH Q lcl|Aclame:pro 304 TLTSTTSQSGGGAFALGQVHNE-VRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQ 382 (526) Q Consensus 304 tltt~~~~~~~gS~a~~~vh~~-v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~ 382 (526) .-..+. ...|+++..+-+.. ....-+...++.|+..||+.|+..--. . ...+.+|.++.....|.+.+++ T Consensus 297 ~~~lg~--~~~~~~s~~e~~~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~-~------~g~~~~fd~~~l~~~d~~~~~~ 367 (432) T protein:vir:10 297 MHQLND--LSKATLNNIEQQQQQFYTDTLQATLTMYEQEMTYKLFLDSEL-D------KGFYSKFNVDAILRADIKTRYE 367 (432) T ss_pred HHHhCC--CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhc-C------CCcEEEeechhhhcCCHHHHHH Confidence 544432 23355554444433 345677889999999999888743211 1 1122344444555678999999 Q ss_pred HHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccc-ccccccccccc Q lcl|Aclame:pro 383 SIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALA-TIVGPRYGDQQ 447 (526) Q Consensus 383 ~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 447 (526) .+.++++.|+ ++.+++|+.+|+|+-+.++....+....+..........+... ..........+ T Consensus 368 ~~~~~~~~G~-~t~NE~R~~~g~~pi~ggD~~~~~~n~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 368 AYRTGIQGGF-LKPNEARSKEDLPPEAGGDRLLVNGNMLPIDMAGQAYLKGGDTNGEVSKEGNEGN 432 (432) T ss_pred HHHHHHhCCC-cCHHHHHHHhCCCCCCCCCeEeecccccchhhccccccCCCCCCCCCCCCCCCCC Confidence 9999999998 9999999999999876666554433221111100000000000 00000000111 No 25 >protein:vir:100249 Length: 431 # NCBI annotation: gp78 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355414;genbank:gi:77864704;genbank:GeneID:3725971 Probab=99.90 E-value=1.3e-22 Score=140.61 Aligned_cols=410 Identities=10% Similarity=-0.005 Sum_probs=245.8 Q ss_pred CCeeecCCCC---ccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGN---PIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAE 77 (526) Q Consensus 1 m~~~~~~~g~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~ 77 (526) |+ |+|..-+ |......+...+.........+.+....+++-..+...+......... . -.+..+ +-+.|.+| T Consensus 1 Mg-l~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~--v-~~~~al-~~~~V~~c 75 (431) T protein:vir:10 1 MG-LFDFIRREKQPEAQARPHVEPSFQASTPTTSIPGETFEGLDDPRLKEYIRRGELNGGT--G-RETRAL-RNMAVLRC 75 (431) T ss_pred Cc-chhhhhcCcccccccccccccccccccccccccccccccccchHHHHhhccCccCcce--e-chhhhh-ccHHHHHH Confidence 98 7777432 111111110011111111111111111222212233333221111000 0 001122 57889999 Q ss_pred HHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEee Q lcl|Aclame:pro 78 MSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLA 152 (526) Q Consensus 78 l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~ 152 (526) +..+-..|.++++.|.-.++.. .+....-+...|+..| ...++++.++ +.+.+|.++++++++ +|. +.. T Consensus 76 i~~Ia~~iA~lp~~v~~~~~~~--~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~--~g~--~~~ 149 (431) T protein:vir:10 76 VTLISGTIGMLPMNLISSDDSK--QVLTDDPAHRLLKYKPNDWQTPMEFKSLMQLRALLDGESMARIVWS--GNR--PIR 149 (431) T ss_pred HHHHHHhhccCceEEEEecCce--eeeccchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEc--CCc--eEE Confidence 9999999999999986543321 1112223344444333 2345555543 678899999999885 343 557 Q ss_pred eeeecCceeEecccCCceEEecc--CCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHc Q lcl|Aclame:pro 153 FHHRPQSWFQLNPEDQNELRLRD--NSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIY 230 (526) Q Consensus 153 l~~r~~~~f~~~~~~~~~l~~~~--~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~ 230 (526) |.+.++.+..+.......+.++. ..+....++....++.++. ..+..+|.|.+..+....-.-....++...|...- T Consensus 150 L~pl~~~~v~~~~~~~~~~~y~~~~~~g~~~~~~~~dViHir~~-~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng 228 (431) T protein:vir:10 150 LIPMDRGSAKGRLTSTWQIVYDYTTPTGDKIELPAREVFHLRDL-SIDGVSGVSRVKLSGNALELAEQAERAASRTFRTG 228 (431) T ss_pred EEEEcCceeEEEEcCCCeEEEEEEeCCceEEEEchhhEEEecCc-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 89999888776544444444432 2333456777776655554 45668999999999998888888899999999999 Q ss_pred CCceEEEecCCCCCHHHHHHHHHHHHHhhc-----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhh Q lcl|Aclame:pro 231 GLPIRLGKYPPGTADEEKATLLRAVTGLGH-----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTL 305 (526) Q Consensus 231 G~P~~vgk~~~~~~~~e~~~l~~al~~~~~-----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtl 305 (526) +.|--|.+++...++++++++.+.+.+.-+ ...+|++.|++++-++.+ ..-..|.+..++..++|++++..+.- T Consensus 229 ~~p~gil~~~~~ls~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~-~~d~q~le~r~~~~~~Ia~~fgVPp~ 307 (431) T protein:vir:10 229 VMAGGAIEVPKELSDNAYGRMKASVQENHTGSENAGSWMLLEEGATAKQFSNT-AASAQQIENRNHQIEEVARMYGVPRP 307 (431) T ss_pred CCccEEEecCCCCCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCC-hhHHHHHHHHHHhHHHHHHHhCCCHH Confidence 999999999998899999998888876532 246889999887766533 22335667778888999999876654 Q ss_pred hcccccccchhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHH Q lcl|Aclame:pro 306 TSTTSQSGGGAFALGQVHNE-VRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSI 384 (526) Q Consensus 306 tt~~~~~~~gS~a~~~vh~~-v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~ 384 (526) -.+.. .+++++..+-+.. ....-+.-.++.|+..||+.|++.-.. ...+.+|.++..-..|.+++++.+ T Consensus 308 ~lg~~--~~~t~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~~--------~~~~~~fd~~~llr~d~~~r~~~~ 377 (431) T protein:vir:10 308 LLMMD--DTSWGSGIEQLAIFFIQYGLSHWFVSWEQAAARAFLPEKML--------GQRQFKFNEGALLRGTLNDQAAFF 377 (431) T ss_pred HhCCC--CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhc--------CCceEEEechhhhccCHHHHHHHH Confidence 33322 2344444443333 334567788889999999887643211 112233433334467899999999 Q ss_pred HHHHhCCCc---CCHHHHHHHhCCCCCCc--cchhcccCCCccccccccccccccccccccccc Q lcl|Aclame:pro 385 PALVNVGLE---IPSAWVYDKLGIPQPAK--NEPVLRSAAQPAILSRQHGQRVAALATIVGPRY 443 (526) Q Consensus 385 ~~l~~~G~~---v~~~~~~e~~Glp~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (526) ++++..|+. ++.+++|+.+|+|+.++ ++....+...........+ ++.+ T Consensus 378 ~~~~~~G~~~g~lT~NE~R~~~gl~p~~~~~gD~~~~p~n~~~~~~~~~~----------p~~~ 431 (431) T protein:vir:10 378 SKALGAGGQSPWMKQNEVREMLDLPRADDPVADQLRNPMTQKQKGSGDEP----------PATT 431 (431) T ss_pred HHHHhcccccCccCHHHHHHHhCCCCCCCccccceecccccccCCCCCCC----------CCCC Confidence 999999875 89999999999997644 5544333222111111110 0000 No 26 >protein:vir:93610 Length: 454 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Probab=99.90 E-value=3e-22 Score=138.58 Aligned_cols=423 Identities=9% Similarity=0.015 Sum_probs=246.0 Q ss_pred eecCCCCccCccccchhhh-hhhh----hhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHH Q lcl|Aclame:pro 4 IVDVYGNPIRTQQLREPQT-SRLA----GLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEM 78 (526) Q Consensus 4 ~~~~~g~p~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l 78 (526) +.|.+.+.-+......+.. +... .+...+...-..|. ..+. +...+-+.|.+|+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~-------------~v~~--------~~al~~~~V~~~v 59 (454) T protein:vir:93 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGV-------------KADP--------EAVLSFHAVFACI 59 (454) T ss_pred CCCccccCcccccccccccchhhhhhhhhhhhhhcchhhcCc-------------ccCh--------HHhhccHHHHHHH Confidence 5566555322222221211 1111 11111111000010 0011 1112457799999 Q ss_pred HHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeee Q lcl|Aclame:pro 79 SKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAF 153 (526) Q Consensus 79 ~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l 153 (526) ..+...|.+++|.|.-...+....+.....+.. |...| ...++++.++ +.+.+|.++++++++..| .+..| T Consensus 60 ~~Ia~~iA~lp~~~~~~~~~g~~~~~~~~~~~~-L~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~G---~~~~L 135 (454) T protein:vir:93 60 SLISQDIAKMRLRLMQTDAQGIRRETRRGDIAR-LCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARG---QIKEL 135 (454) T ss_pred HHHHHhhccCceEEEEeccCCccchhhhHHHHH-HHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEECCCC---cEEEE Confidence 999999999999996533221111111122222 32333 2456777666 578899999999986543 36689 Q ss_pred eeecCceeEecccCCceEEecc--CC----CCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 154 HHRPQSWFQLNPEDQNELRLRD--NS----PAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEML 227 (526) Q Consensus 154 ~~r~~~~f~~~~~~~~~l~~~~--~~----~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~ 227 (526) .+.++.++.+..+..+.+.++- .. .....++....+++++....+..+|.|.+..+....-.-....++...|. T Consensus 136 ~~i~~~~v~v~~~~~g~~~y~~~~~~~~~~~~~~~~~~~eViH~k~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f 215 (454) T protein:vir:93 136 RILDWNRVEPLVADDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFF 215 (454) T ss_pred EEEcCcceEEEEcCCCcEEEEEEeccccccceeEEecCcceEEeccCCCCCCceeccHHHHHHHHHHHHHHHHHHHHHHH Confidence 9999988776554433333332 11 12335677776666666667788999999999999888888888889999 Q ss_pred HHcCCceEEEecCCCCCHHHHHHHHHHHHHhhc----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhch Q lcl|Aclame:pro 228 EIYGLPIRLGKYPPGTADEEKATLLRAVTGLGH----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGG 303 (526) Q Consensus 228 E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGq 303 (526) ..-+.|--+.+++...++++++++.+.+.++.+ +..+|++.|++++-++.+. .-..|.+..++...+|++++..+ T Consensus 216 ~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~-~d~q~le~~~~~~~~Ia~~fgVP 294 (454) T protein:vir:93 216 RNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSP-VDSQTVEQLKMTAEIVCSVFRVP 294 (454) T ss_pred hccCCccEEEecCCCCCHHHHHHHHHHHHHHhcccccCCceeccCCceEEEcccCh-hHHHHHHHHHHHHHHHHHHhCCC Confidence 999999999999988899999888888877642 3468889999887776432 22357777888899999998666 Q ss_pred hhhcccccccchhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHH Q lcl|Aclame:pro 304 TLTSTTSQSGGGAFALGQVHN-EVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQ 382 (526) Q Consensus 304 tltt~~~~~~~gS~a~~~vh~-~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~ 382 (526) ..-.+.. ..++++..+.+. .....-+.-.++.|+..||+.|+.. ...+-+|.++.....|.+.+++ T Consensus 295 p~~lg~~--~~~t~sn~e~~~~~f~~~~l~P~~~~ie~~ln~~L~~~-----------~~~~~~f~~~~ll~~D~~~r~~ 361 (454) T protein:vir:93 295 AYKIGVG--QPPSSDNVEALEQQYYSQCLQTLIESIELLLDEALETG-----------ENESTEFDVTTLLRMDSERRMK 361 (454) T ss_pred HHHcCCC--CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----------CCcEEEeechhhhccCHHHHHH Confidence 5433322 234454444333 3355678888899999999876531 1223344444444678999999 Q ss_pred HHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCcc--------cc--cccccccccccccccccccccccchHHH Q lcl|Aclame:pro 383 SIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPA--------IL--SRQHGQRVAALATIVGPRYGDQQALDKA 452 (526) Q Consensus 383 ~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (526) .+.++++.|+ ++.+++|+.+|+|+.+.+++...+..... .. +.....+....... .+.........+. T Consensus 362 ~~~~~~~~G~-~T~NE~R~~~gl~pi~ggD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~e~ 439 (454) T protein:vir:93 362 TLGDAVKNTL-LTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQA-VAASDGNKAITET 439 (454) T ss_pred HHHHHHhCCC-cCHHHHHHHhCCCCCCCCCeeeeccCccchHhhhccCcccCCCCCCccCCCCCCC-CCCCCCCCCccCC Confidence 9999999997 99999999999998777665432211100 00 00000011110000 0000111111111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 453 LADLPAKDMQNQANDLLAPLLEAVNR 478 (526) Q Consensus 453 ~~~~~~~~~~~~~~~~~~~i~~~~~~ 478 (526) -.+...+ .++..+++ T Consensus 440 ~~d~~~~-----------~~~~~~~~ 454 (454) T protein:vir:93 440 EHDAVKA-----------MFRGILKK 454 (454) T ss_pred ccchhhh-----------hhhhhhcC Confidence 1111111 11122222 No 27 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=99.89 E-value=1.4e-22 Score=140.34 Aligned_cols=502 Identities=12% Similarity=0.054 Sum_probs=256.0 Q ss_pred CCeeecCCC-Ccc-Cccccchhhhh--hh-----hhh-hhhhhhhhhcccCHHHHHHHHH----------cccCCCHHHH Q lcl|Aclame:pro 1 MAQIVDVYG-NPI-RTQQLREPQTS--RL-----AGL-AKEFAQHPAKGLTPAKLARILV----------EAEQGNLQAQ 60 (526) Q Consensus 1 m~~~~~~~g-~p~-~~~~~~~~~~~--~~-----~~~-~~~~~~~~~~~l~~~~~~~~l~----------~a~~g~~~~~ 60 (526) +++=.|--| +|+ ..+++.=..|- .+ -.+ ++.-.-.|.+.-.|....+++. ....++.--. T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~i~~pfkkk~~~~~~d~f~~s~es~s~vtsls~pdaf~~ 113 (945) T protein:vir:10 34 LSRGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFL 113 (945) T ss_pred hhcccCCCCcchhhhhhhhhccceeeeeeeeehhhhHHHhhcccccccccccchhhhhhhccCccceecccccCccceee Confidence 221000000 000 00000000000 00 000 0000001111111111111111 0011110011 Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCCceEecCCCCCHHH---HH--HHHHHHHHHhc----C---cCHHHHHHHHH- Q lcl|Aclame:pro 61 AELFMDMEERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAE---KA--DADYLHELLLD----L---EGLEDLLLDAL- 127 (526) Q Consensus 61 ~~l~~~m~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~---~~--~a~~v~~~l~~----~---~~~~~~i~~~l- 127 (526) ..++..+..+.+.|.+|+..+...|.++++.+.-..++...+ ++ ...-+..+|++ + ..|..+++.++ T Consensus 114 vnVs~~~AlknsaV~scI~~IA~sIAsLPlklYrr~edG~~~~~~kk~~~~hpL~~LL~rPNp~mT~~eFwqsFl~~Lv~ 193 (945) T protein:vir:10 114 INLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLD 193 (945) T ss_pred ehhhhhhhhccHHHHHHHHHHHhhhccCceEEEEecccCcccccccccccchHHHHHHhCCCcccChhHHHHHHHHHHHH Confidence 234444555789999999999999999999884321111100 11 11223344432 1 12445676664 Q ss_pred HhhhhcceeeeEEEeecCCeeEEeeeeeecCceeEecccCCc--eEEecc--CCCCceeecCCCeEEEeecCCCC---cc Q lcl|Aclame:pro 128 DGIGHGYSCIELEWALQGREWMPLAFHHRPQSWFQLNPEDQN--ELRLRD--NSPAGEALQPFGWIIHRPRARSG---YV 200 (526) Q Consensus 128 da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~~~~~~~--~l~~~~--~~~~g~~lp~~k~i~~~~~~~~g---~p 200 (526) +.+.+|.++++++++..| .|..|.+.++.++++..+..+ ...+.. ++.....+++...|+|.+....+ .. T Consensus 194 dLLL~GNAYieIiRd~~G---~ii~L~pLdPs~Vti~~ddDG~~~y~Yv~~idG~~~~~v~a~DvIlhirn~s~DG~~~G 270 (945) T protein:vir:10 194 DILTIDRGAIVKIRDEQG---NLVAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYG 270 (945) T ss_pred HHhhcCCeEEEEEECCCC---cEEEEEEECCcceEEEEcCCCcEEEEEEEecCCceEEEecCCceEEEeccCCCCccccc Confidence 788999999999876544 356889999988776544333 222222 33334567888888888665443 23 Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHcC-CceEEEec----------CCCCCHHHHHHHHHHHHHhhc--C--eEEE Q lcl|Aclame:pro 201 ARSGLFRVLAWPYLFRHYATSDLAEMLEIYG-LPIRLGKY----------PPGTADEEKATLLRAVTGLGH--A--AAGI 265 (526) Q Consensus 201 ~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G-~P~~vgk~----------~~~~~~~e~~~l~~al~~~~~--~--~~~i 265 (526) +|.+.+..+....-......++-+.|..+.| +|--+.++ +...++++++++.+.+.+..+ + ..+| T Consensus 271 yGlSPIeaa~~aI~~alAaek~aar~FskNGa~PsGILsvkg~~~~d~k~~~~LseEq~erlKe~wee~~sG~NnG~piV 350 (945) T protein:vir:10 271 YSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPIL 350 (945) T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecCccccccccccccCHHHHHHHHHHHHHHhCCccccccee Confidence 5888899999888887778887778876665 67555543 444577888888877776532 2 2357 Q ss_pred ecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHH-HHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 266 IPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVR-HDLLASDARQLAATLSR 344 (526) Q Consensus 266 ip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~-~~~~~ad~~~i~~~ln~ 344 (526) ++.|++++-++.+. .-..|.+..++..++|+++...+.--.+..+ +++++..+.+...+ ..-+...+..|+..||+ T Consensus 351 LdeGmef~pLs~s~-~DaQfLEsrkfs~eeIArAFGVPP~lLG~~e--~st~SNiEqq~~~Fv~~tL~Pil~~IEqeLNr 427 (945) T protein:vir:10 351 SGGKFTWIDFKGKR-RDMQFKELAEFVARKICAVYQVSPQDVGILE--GSNKATAEVMASLTKAKGLEPLMATISKGFDE 427 (945) T ss_pred cCCCceEEEccCCh-hHHHHHHHHHHHHHHHHHHhCCCHHHcccCC--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 78888776665322 2335778888899999999876644333222 24444445555554 56788999999999998 Q ss_pred HHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCC--cc Q lcl|Aclame:pro 345 DLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQ--PA 422 (526) Q Consensus 345 ~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~--~~ 422 (526) .|.+... ...-+|.|+...-.|.+.+++++.++++.|+ ++.+++|+.+|+|+.+.++..+.+... |. T Consensus 428 kLl~~~e----------g~~i~fdFd~ldl~D~ksraEal~kli~sGi-LTiNEvRe~lGLpPIeGGD~lli~~nn~~P~ 496 (945) T protein:vir:10 428 VVSEFRN----------EKDIKLWFKEDDLEKERDWWNIIQGQLNTGF-RSINEARMEKGLEPVPWGDVPFSGLRNWKPE 496 (945) T ss_pred hcccccc----------CceeEEEecchhccCHHHHHHHHHHHHhCCC-cCHHHHHHHhCCCCCCCcceeeecccccccc Confidence 6543111 1123577777777888999999999999998 999999999999988777765433211 11 Q ss_pred cc--cccccccccc----cccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC Q lcl|Aclame:pro 423 IL--SRQHGQRVAA----LATIVGPRYGDQQALDKALADLPAKDMQNQANDLLAPLLEAVNRGDSETELLGALAEAFPDM 496 (526) Q Consensus 423 ~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~s~ee~~~~L~~l~~~l 496 (526) .. .+..+..... ....+....+..+. .+........ ......+.+.+.++.. ..|-...|.|+-..= T Consensus 497 d~~~ka~~ga~p~q~aq~~~dqp~~kGGe~dE-ns~~psE~kd----a~~e~~~~l~~~~~~~--a~e~i~~~~e~~~~~ 569 (945) T protein:vir:10 497 DEQAKAQQGAMPPQLAQAMADQPSQQGGGVDE-NSSVPSEQKN----AGLEVLRNLFKSLDAN--ASENLKQVIELTNDD 569 (945) T ss_pred ccccccccCCCCcccccCCCCCCCCCCCCCCC-CCCCCCcccc----hHHHHHHHHHHHHHHH--HHHHHHHHHhhcCCC Confidence 00 0000000000 00000000000000 0000001111 1111122222222211 122233334443333 Q ss_pred CHHHHHHHHHHHHHHHHHHhHHhhhh---------hccC Q lcl|Aclame:pro 497 DDSALTDALHRLLFAADTWGRLHGNL---------DRID 526 (526) Q Consensus 497 ~~~~l~~~l~~a~~~A~l~G~~~~~~---------e~~d 526 (526) .-.+.+++|.+.+-.--|-|-..--. ..+| T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (945) T protein:vir:10 570 NYLKEKELLTRVLKSVGLDSVSEFIENNSQTDVEVSAKD 608 (945) T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHhcCCccceeechhh Confidence 33455667777554444433221110 1111 No 28 >protein:vir:1380 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612832;genbank:gi:20065966;genbank:GeneID:935782 Probab=99.89 E-value=1.8e-22 Score=139.82 Aligned_cols=404 Identities=9% Similarity=0.014 Sum_probs=247.8 Q ss_pred CCeeecC-CCCccCccccc-hhh-hhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHH Q lcl|Aclame:pro 1 MAQIVDV-YGNPIRTQQLR-EPQ-TSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAE 77 (526) Q Consensus 1 m~~~~~~-~g~p~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~ 77 (526) |+ |++. .++.-.....+ .+. .+.+.. ..-..+...|..+ . . .+......+-+.|.+| T Consensus 1 MG-~f~~lf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~----------~---~----~v~~~~al~~~~v~~c 60 (422) T protein:vir:13 1 MG-FLRGLFNKKNNNDEKRSNYDEDIGIDI--SDSNFWEKFGIKL----------N---F----SVRGKRALKENTVYVC 60 (422) T ss_pred Cc-hhhhhhhccCCccchhhhhhhcccccc--CcchhhhhccccC----------C---c----ccchhhhhccHHHHHH Confidence 88 6664 33321111100 000 000000 0000011111110 0 0 0111111246788999 Q ss_pred HHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeee Q lcl|Aclame:pro 78 MSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHR 156 (526) Q Consensus 78 l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r 156 (526) +..+-..|.++++.+....+... +-.....+...=+..-...++++.+. +.+.+|.+.++++++..| .+..|.+. T Consensus 61 i~~ia~~iA~lp~~~~~~~~~~~-~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G---~~~~L~~i 136 (422) T protein:vir:13 61 TKIRAESIGKLSLKIYKDKEEYK-EHELYYLLRYKPNPLMSSINFWKCLETQRTLKGNAYAYIERDRKG---KIIGLYPI 136 (422) T ss_pred HHHHHHhhhhCceEEEecCcccc-cchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCC---cEEEEEEE Confidence 99999999999999975443222 22334443321111112456666666 478899999999876543 36789999 Q ss_pred cCceeEecccCCc------eEEecc--CCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 157 PQSWFQLNPEDQN------ELRLRD--NSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLE 228 (526) Q Consensus 157 ~~~~f~~~~~~~~------~l~~~~--~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E 228 (526) ++.++....+... .+.+.. ..+....+++...+++++....+..+|.|.+..+....-.-....++...|.. T Consensus 137 ~~~~v~~~~~~~~~~~~~~~~~y~~~~~~g~~~~~~~~eiih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ 216 (422) T protein:vir:13 137 NSDNVTKIIDDDNFLSSLSKVWYVVTDKNGKEHKLLPDEMLHFIGDITLDGLIGIKPLDYLRCTIENGRATQEFINKFFK 216 (422) T ss_pred CCcceEEEEcCCcceeccceEEEEEEeCCCeEEEEcccceEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh Confidence 9988876554432 122222 22233457888888777766677889999999999988888888888888999 Q ss_pred HcCCceEEEecCCCCCHHHHHHHHHHHHHhhc-----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhch Q lcl|Aclame:pro 229 IYGLPIRLGKYPPGTADEEKATLLRAVTGLGH-----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGG 303 (526) Q Consensus 229 ~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~-----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGq 303 (526) .-+.|--+.+++...++++++++.+.+.+..+ ...+|++.|++++-+..+. .-..|.+..++..++|++++..+ T Consensus 217 ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~-~d~q~le~~~~~~~~Ia~~fgVp 295 (422) T protein:vir:13 217 NGLSIKGIVQYVGDLDEKAKKIFKKEFESMSNGLENAHSISLLPFGYQFQPISLSM-ADAQFLENSKLTKRELAATFGMK 295 (422) T ss_pred ccCCccEEEEeCCCCCHHHHHHHHHHHHHHhcCccccCCceecCCCceeeeccCCh-hHHHHHHHHHHHHHHHHHHhCCC Confidence 99999999999988899999988888877632 3478899999887765432 23357778889999999998776 Q ss_pred hhhcccccccchhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHH Q lcl|Aclame:pro 304 TLTSTTSQSGGGAFALGQVHN-EVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQ 382 (526) Q Consensus 304 tltt~~~~~~~gS~a~~~vh~-~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~ 382 (526) .-..+.. ..++++..+.+. .....-+...++.|+..||+.|++..-... + .+-+|.++.-...|++++++ T Consensus 296 p~~lg~~--~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~-g------~~i~fd~~~l~r~d~~~~~~ 366 (422) T protein:vir:13 296 SYHLNDL--ERATFNNLTEQQKDFYVTTLQSSLTVYEQEIQDKLFSQYETLQ-D------VKAEFNVDTILRSDIKTRYE 366 (422) T ss_pred HHHhCCC--CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhcC-C------ceEEeechhhhcCCHHHHHH Confidence 5433222 234454444333 334567888899999999998876543211 1 12233333444568999999 Q ss_pred HHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccccc Q lcl|Aclame:pro 383 SIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPR 442 (526) Q Consensus 383 ~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (526) .++++++.|+ ++.+++|+.+|+|+-+.++....+....+......... ..+..... T Consensus 367 ~~~~~~~~G~-~T~NE~R~~~gl~p~~ggD~~~~~~n~~~l~~~~~~~~---~~g~~~g~ 422 (422) T protein:vir:13 367 AYRIGIQGGF-IEANEARRRENLPPVEGGDRLLVNGNMIPIEMAGEQYK---KGGEKGGK 422 (422) T ss_pred HHHHHHhCCC-cCHHHHHHHhCCCCCCCcCeeeeccCccchhhcccccc---cCCCcCCC Confidence 9999999998 99999999999998777776554332211111110000 00110000 No 29 >protein:vir:81072 Length: 432 # NCBI annotation: p07 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285677;genbank:gi:148727185;genbank:GeneID:5247117 Probab=99.89 E-value=1.6e-22 Score=140.09 Aligned_cols=409 Identities=15% Similarity=0.080 Sum_probs=237.3 Q ss_pred CCe--eecCCCC---ccCccc-cchhhhhh---hhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhcc Q lcl|Aclame:pro 1 MAQ--IVDVYGN---PIRTQQ-LREPQTSR---LAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERD 71 (526) Q Consensus 1 m~~--~~~~~g~---p~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D 71 (526) |+. +.+-++| .+.... ........ +....+.+ .+........... +-..+- T Consensus 1 ~~~~~~mg~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~g~~v~~------~~al~~ 60 (432) T protein:vir:81 1 MPDEKKLGLFGQLKAMFVPPDPVDIGGGQTFTPVNATARDL--------------GIIISDTGAAVNA------DAIMRL 60 (432) T ss_pred CCchhhcchhhhhhhhcccccccccccccccccCccchhhh--------------cccccccCcccch------Hhhhcc Confidence 431 1111222 111111 00000000 00111111 0011111111111 112257 Q ss_pred HHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCC Q lcl|Aclame:pro 72 AHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGR 146 (526) Q Consensus 72 ~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g 146 (526) +.|.+|+..+-..|.++++.|.-..++... +....-+...|+..| ...++++.+. +.+.+|.+.+++++. +| T Consensus 61 ~~V~~~i~~Ia~~ia~lp~~~y~~~~~g~~-~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnayv~i~~~--~g 137 (432) T protein:vir:81 61 DAVAACVKLVSQAIAAMPLTMYMRTPDGRK-EAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT--DG 137 (432) T ss_pred HHHHHHHHHHHHhhhhCceeeEEecCCcce-ecccchHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec--CC Confidence 889999999999999999988432221111 111112333443322 2345666555 578899999998774 44 Q ss_pred eeEEeeeeeecCceeEecccCCceEEecc--CCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 147 EWMPLAFHHRPQSWFQLNPEDQNELRLRD--NSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLA 224 (526) Q Consensus 147 ~~~~~~l~~r~~~~f~~~~~~~~~l~~~~--~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~ 224 (526) .|..|.+.++.++.+..+..+.+.++. ..+....++....++.++....+ .+|.|.+..+....-.-....++.. T Consensus 138 --~~~~L~~l~~~~v~v~~~~~g~~~y~~~~~~g~~~~~~~~~iih~r~~~~dg-~~G~spi~~~~~~i~~~~~~~~~~~ 214 (432) T protein:vir:81 138 --RIESLQYLANDRLTITTDPKGNTAYRYRRTDGQMIDIPKQQIWKIMGYSLDG-ENGLSAIRYGAQIFGTAIAAEAQAA 214 (432) T ss_pred --cEEEEEEEcCCceEEEECCCCcEEEEEEecCceEEEEccccEEEecCCCCCC-cccccHHHHHHHHHHHHHHHHHHHH Confidence 367899999988887665554444433 33334567777776666554444 7899999999988888888888888 Q ss_pred HHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHhhc-CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhch Q lcl|Aclame:pro 225 EMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGH-AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGG 303 (526) Q Consensus 225 ~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~-~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGq 303 (526) .|....+.|--|.+++...++++++++.+.+....+ +..+++|.|++++-++.+. .-..|.+..++..++|++++..+ T Consensus 215 ~~f~ng~~~~gil~~~~~l~~e~~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~-~d~q~le~~~~~~~~Ia~~fgVP 293 (432) T protein:vir:81 215 RAFRNGQLQSVYYQIDRFLTDDQYDSFAKKVSGSVEAGRAPLLEGGMDVKSLGLNP-VDAQLLQSRQYSVESICRFFGVP 293 (432) T ss_pred HHHhcCCCcceEEecCCCCCHHHHHHHHHHHhhhhcCCCceecCCCceEEEccCCH-HHHHHHHHHHHHHHHHHHHhCCC Confidence 999889999999999999999999998888876544 4588899999887775432 22356777889999999998766 Q ss_pred hhhcccccccchhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecC--ccccCH Q lcl|Aclame:pro 304 TLTSTTSQSGGGAFALG----QVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDL--REQADI 377 (526) Q Consensus 304 tltt~~~~~~~gS~a~~----~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~--~e~edl 377 (526) .--.+.. ..|+++.+ +........-+.--++.|+..||+.|+.+--. .. -+|+|+. .-..|. T Consensus 294 p~~lg~~--~~~~~~~~sn~eq~~~~f~~~tl~P~~~~ie~~l~~kLl~~~~~--------~~--~~~~fd~~~llr~d~ 361 (432) T protein:vir:81 294 PSMIGHS--SAGTTSWGSGIESQQLGFLTMTLSPWLRRIEQSIALNLLSPAER--------RR--YFADFDTSALLRADS 361 (432) T ss_pred HHHcCCc--CCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc--------Cc--eEEEeechhhhccCH Confidence 5433322 22333222 22222334566778888888888877653211 11 1345543 345789 Q ss_pred HHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccccccchHH Q lcl|Aclame:pro 378 TSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDK 451 (526) Q Consensus 378 ~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (526) +++++++.++++.|+ ++.+++|+.+|+|+.+++++.+.......+.... +....... ........++.+.+ T Consensus 362 ~~r~~~~~~~~~~G~-~t~NE~R~~~glpp~~g~~~~~~~~~~~~pl~~~-~~~~~~~~-~~~~~n~~~~~~~~ 432 (432) T protein:vir:81 362 AARSSYYSQLVNNGL-MTRDEAREIEGLPKLGGNAAVLTVQSAMVPLDSI-GLQASPEP-ASGLGNQQQDKVSK 432 (432) T ss_pred HHHHHHHHHHHhCCC-CCHHHHHHHhCCCCCCCCcceEeecCcccchhhh-ccCCCCCC-CCCCCCcccccccC Confidence 999999999999997 9999999999999876665544322221111111 10000000 00000111111111 No 30 >protein:vir:97060 Length: 432 # NCBI annotation: putative head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453563;genbank:gi:84662598;genbank:GeneID:5142475 Probab=99.89 E-value=1.3e-22 Score=140.51 Aligned_cols=416 Identities=15% Similarity=0.072 Sum_probs=236.4 Q ss_pred CC--eeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHH Q lcl|Aclame:pro 1 MA--QIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEM 78 (526) Q Consensus 1 m~--~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l 78 (526) |+ +..+-.|+...+ ...+......+... + .|... +...+......++. . +..+-..+-+.|.+|+ T Consensus 1 ~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~-~--~~~~~-~~~~~~~~~~~~g~-~------v~~~~a~~~~aV~~~v 67 (432) T protein:vir:97 1 MPDEKKLGLLGQLKAM--FVPPDPVDIGGGQT-F--TPVNA-TARDLGIIISDTGA-A------VNADAIMRLDAVAACV 67 (432) T ss_pred CCCcccCchhhhhHhh--cCCccccccccccc-c--ccCch-hhhhhcccccccCc-c------cchHhhhcchHHHHHH Confidence 22 111122222111 11111111111000 0 00000 00000000111111 1 1112223578999999 Q ss_pred HHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeee Q lcl|Aclame:pro 79 SKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAF 153 (526) Q Consensus 79 ~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l 153 (526) ..+-..|.+++|.|.-...+.. .+..-.-+...|+..| ...++++.+. +.+++|.+++++++. +| .+..| T Consensus 68 ~~Ia~~ia~lp~~~y~~~~~g~-~~~~~~pl~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~--~g--~~~~L 142 (432) T protein:vir:97 68 KLVSQAVAAMPLMMYMRTPDGR-KEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT--DG--RIESL 142 (432) T ss_pred HHHHHhhccCceEEEEecCCCc-ccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec--CC--cEEEE Confidence 9999999999998854322211 1111112233343322 2345666555 678899999999874 44 36789 Q ss_pred eeecCceeEecccCCceEEecc--CCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcC Q lcl|Aclame:pro 154 HHRPQSWFQLNPEDQNELRLRD--NSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYG 231 (526) Q Consensus 154 ~~r~~~~f~~~~~~~~~l~~~~--~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G 231 (526) .+.++.+++...+..+.+.++. ..+....+++...++.++.. .+..+|.|.+..+...+-.-....++-..|...-+ T Consensus 143 ~~l~p~~v~v~~~~~g~~~y~~~~~~g~~~~~~~~~iih~r~~~-~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~ 221 (432) T protein:vir:97 143 QYLANDRLTITTDTKGNTAYRYRRTDGQMIDIPRQQIWKIMGYS-LDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQ 221 (432) T ss_pred EEEcCcceEEEEcCCCcEEEEEEecCceEEEEccccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccC Confidence 9999988877655444444443 23333467777766655544 34578999999999888777788888888999999 Q ss_pred CceEEEecCCCCCHHHHHHHHHHHHHhh-cCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccc Q lcl|Aclame:pro 232 LPIRLGKYPPGTADEEKATLLRAVTGLG-HAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTS 310 (526) Q Consensus 232 ~P~~vgk~~~~~~~~e~~~l~~al~~~~-~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~ 310 (526) .|--|.+++...++++++++.+.+.... ++..+|++.|++++-+..+. .-..|.+..++..++|++++..+.--.+.. T Consensus 222 ~~~gil~~~~~l~~e~~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~-~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~ 300 (432) T protein:vir:97 222 LQSVYYQIDRFLTDDQYDSFSKKVSGSVEAGRAPLLEGGMDVKSLGLNP-VDAQLLQSRQYSVESICRFFGVPPSMIGHS 300 (432) T ss_pred CcceeEecCCCCCHHHHHHHHHHHhhhhcCCCceecCCCceEEEccCCh-hHHHHHHHHHHHHHHHHHHhCCCHHHcCCc Confidence 9999999999899999998888877653 34688999999887775432 233577788899999999986654333222 Q ss_pred cccchhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecC--ccccCHHHHHHHH Q lcl|Aclame:pro 311 QSGGGAFALG----QVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDL--REQADITSMAQSI 384 (526) Q Consensus 311 ~~~~gS~a~~----~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~--~e~edl~~~a~~~ 384 (526) + .|+++.+ +........-+.-.++.|+..||+.|+.+--. ... +|+|+. .-..|.+++++.+ T Consensus 301 ~--~~t~~~~s~~e~~~~~f~~~tl~P~~~~ie~~ln~kLl~~~e~--------~~~--~~~fd~~~llr~d~~~r~~~~ 368 (432) T protein:vir:97 301 S--AGTTSWGSGIESQQLGFLTMTLSPWLRRIEQSIALNLLTPAER--------RRY--FADFDTSALLRADSAARSSYY 368 (432) T ss_pred C--CcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccc--------Cce--EEEeechhhhccCHHHHHHHH Confidence 2 2222221 12222334566777788888888777643211 111 345543 4457899999999 Q ss_pred HHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccccccchHHH Q lcl|Aclame:pro 385 PALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKA 452 (526) Q Consensus 385 ~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (526) .+++..|+ ++.+++|+.+|+|+.++++..+.......+.... +....... ..+ ....++..+.. T Consensus 369 ~~~~~~G~-~T~NE~R~~~glpp~~g~~~~~~~~~~~~pl~~~-~~~~~~~~-~~~-~~~~~~~~~~~ 432 (432) T protein:vir:97 369 SQLVNNGL-MTRDEAREIEGLPKLGGNAAVLTVQSAMVPLDSI-GLQASPEP-ASG-LGNQQQDKVSK 432 (432) T ss_pred HHHHhCCC-CCHHHHHHHhCCCCCCCCcceEeecccccchhhh-cccCCCCC-CCC-CCCcccccccC Confidence 99999998 9999999999998876655544322211111110 00000000 000 11111111111 No 31 >protein:vir:1266 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690758;genbank:gi:22854998;genbank:GeneID:955213 Probab=99.89 E-value=3.1e-22 Score=138.53 Aligned_cols=403 Identities=11% Similarity=0.030 Sum_probs=241.5 Q ss_pred eeecCCCCccCccc-cchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHHH Q lcl|Aclame:pro 3 QIVDVYGNPIRTQQ-LREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSKR 81 (526) Q Consensus 3 ~~~~~~g~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~R 81 (526) -|++.. |+++. .+......-......+...+.. .| ..+..+-..+-+.|.+|+..+ T Consensus 1 m~~~~~---f~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~-----~~v~~~~al~~~~v~~~i~~I 57 (416) T protein:vir:12 1 MLLERM---FEKRSGSSDHEDGFNNILLNMFGGRKTA---------------SG-----ERVSESNSLVQPDIFACVNVL 57 (416) T ss_pred Cccchh---cccccCccccCccchhHHHHhhcCcccc---------------cC-----ceechhhhhccHHHHHHHHHH Confidence 122221 11111 1111110000011111100000 00 011111112568899999999 Q ss_pred HHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeee Q lcl|Aclame:pro 82 KRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHR 156 (526) Q Consensus 82 k~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r 156 (526) ...|.+++|.+.-..++.. .+....-+...|+..| ...++++.++ +.+.+|.+++++++...| .+..|.+. T Consensus 58 a~~ia~l~~~~~~~~~~~~-~~~~~~~l~~~l~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G---~~~~L~~l 133 (416) T protein:vir:12 58 SDDIAKLPIHTYKRTDGGI-ERKPEHKSAHAVYARPNPYMTAFTWKKLMMTHVLTWGNAYSYIQFGSHG---YPEALFPL 133 (416) T ss_pred HHhhhhCceEEEEecCCcc-ccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCC---cEEEEEEE Confidence 9999999998754332211 1111111222232222 2456777666 567799999999875543 37789999 Q ss_pred cCceeEecccCC-ceEEec-cCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCce Q lcl|Aclame:pro 157 PQSWFQLNPEDQ-NELRLR-DNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPI 234 (526) Q Consensus 157 ~~~~f~~~~~~~-~~l~~~-~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~ 234 (526) ++.++....+.. ..+.+. ...+....+++...++.++. ..+.++|.|.+..++...-.-....++...|.+.-+.|- T Consensus 134 ~~~~v~v~~~~~~~~~~~~~~~~g~~~~~~~~eiih~~~~-~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~ 212 (416) T protein:vir:12 134 RPDYTNAYVHPTTGMLWYQTVLNGKAIELYDYEVLHFKGL-STDGIHGKSPIGVVREHIGAQAAATKYNAKLYKNEATPR 212 (416) T ss_pred CCcceEEEEeCCCcEEEEEEecCCeEEEecCccEEEecCc-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc Confidence 998877543322 222222 22223346778877666654 455689999999999999888888888999999999999 Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhh-cCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhccccccc Q lcl|Aclame:pro 235 RLGKYPPGTADEEKATLLRAVTGLG-HAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSG 313 (526) Q Consensus 235 ~vgk~~~~~~~~e~~~l~~al~~~~-~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~ 313 (526) -|.+++...++++++++.+....+. +...+|+|.|++++-++.+. .-..|.+..++..++|++++..+.-..+. .. T Consensus 213 ~il~~~~~~~~e~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~-~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~--~~ 289 (416) T protein:vir:12 213 GILKVPAFLDEKPKENVRKEWKRVNKVENIAIIDYGLEYQSISMPL-QEAQFVESMKFNKAQISMIYKVPLHKLNE--LD 289 (416) T ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCeeecCCCceEEEccCCh-hhHHHHHHHHHHHHHHHHHhCCCHHHhCC--cc Confidence 9999999899999999988887764 45678899999888776432 23357778899999999998776543322 22 Q ss_pred chhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEec--CccccCHHHHHHHHHHHHhC Q lcl|Aclame:pro 314 GGAFALGQVHNEV-RHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFD--LREQADITSMAQSIPALVNV 390 (526) Q Consensus 314 ~gS~a~~~vh~~v-~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~--~~e~edl~~~a~~~~~l~~~ 390 (526) .++++..+.+... ...-+...++.|+..||+.|+...-... . .+|+|+ .....|.+.+++++.++++. T Consensus 290 ~~t~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~l~~~~~~~~-------g--~~i~fd~~~l~~~d~~~~~~~~~~~~~~ 360 (416) T protein:vir:12 290 KATFSNIEHQSIEYVRNTLQPWIVNFEQELNVKLFLDHDQKS-------G--HYVKFNIDSELRGDSKTQAEYLKTLHET 360 (416) T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhcC-------C--ceEEeechhhhccCHHHHHHHHHHHHhC Confidence 3556555444433 4677888999999999988774332110 1 134554 33457899999999999999 Q ss_pred CCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccc-cccccc Q lcl|Aclame:pro 391 GLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVG-PRYGDQ 446 (526) Q Consensus 391 G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 446 (526) |+ ++.+++|+.+|+|+.+.++....+..............+....+..+ ...... T Consensus 361 G~-~T~NE~R~~~gl~Pi~ggd~~~~~~n~~~~~~~~~~~~~~~~~~~~gge~~~~g 416 (416) T protein:vir:12 361 GV-LNKDEIRELLERNPIENGDKYISSLNYVFLDFLEEYQRLKAGGAMKGGDNKNEG 416 (416) T ss_pred CC-cCHHHHHHHhCCCCCCCcceeeeccccccccccchhhccccccccCCCCCcCCC Confidence 98 99999999999998877776544322111110000000000000000 000001 No 32 >protein:vir:3153 Length: 467 # NCBI annotation: capsid protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665924;genbank:gi:22091110;genbank:GeneID:951257 Probab=99.89 E-value=1.7e-21 Score=134.50 Aligned_cols=394 Identities=12% Similarity=0.066 Sum_probs=229.3 Q ss_pred HHHHHhccHHHHHHHHHHHHHHhcCCceEecCCCCCH--HHHHHHHHHHHHHhcC-c------------CHHHHHHHHH- Q lcl|Aclame:pro 64 FMDMEERDAHLFAEMSKRKRAILGLDWAVEPPRNASA--AEKADADYLHELLLDL-E------------GLEDLLLDAL- 127 (526) Q Consensus 64 ~~~m~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~--~~~~~a~~v~~~l~~~-~------------~~~~~i~~~l- 127 (526) .++|.+..+.|.+|+..+...|.+++|.|.+..+... ......+.+...+... + .+.+++..+. T Consensus 1 l~~l~~~n~~v~~ci~~ia~~ia~~p~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~pn~~~~~~~~~~~t~~~~~~~~~~ 80 (467) T protein:vir:31 1 MAELLEHNETHAKCVHAKSRYVAGFGINIIPHPEAEDPDRDGEQYERVWDFWFGDDSNWQVGPMESERATATNVLQTAWT 80 (467) T ss_pred ChhhhhcCHHHHHHHHHHHHhhhcCCeEEEEccCcccccchhhhhhhHHHHhhccCCCccccchhhHhhHHHHHHHHHHH Confidence 4555667899999999999999999999986432211 1112222223333221 1 1345555444 Q ss_pred HhhhhcceeeeEEEeecCCeeEEeeeeeecCceeEecccCCceEEec-------------------------------cC Q lcl|Aclame:pro 128 DGIGHGYSCIELEWALQGREWMPLAFHHRPQSWFQLNPEDQNELRLR-------------------------------DN 176 (526) Q Consensus 128 da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~~~~~~~~l~~~-------------------------------~~ 176 (526) +...+|.++++++++..| .|..|.+.++.+++...+....+.+. .. T Consensus 81 ~l~l~Gn~~i~~~r~~~G---~~~~l~~l~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (467) T protein:vir:31 81 DYEAIGWLTIEILTQTDG---TPTGLAYVPGHTIRKRMDERGFVQLLEEKEKYFGVAGDRYQTNGNGDLDPVFVDADDGS 157 (467) T ss_pred HHHhcCCeEEEEEECCCC---cEEEEEEeCCceeEeeeecceeEeecCCceeeEEeccccceeecccceeeeeeeecccc Confidence 577899999999986655 35577777776655433322111000 01 Q ss_pred CCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecC-CCCCHHHHHHHHHHH Q lcl|Aclame:pro 177 SPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYP-PGTADEEKATLLRAV 255 (526) Q Consensus 177 ~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~-~~~~~~e~~~l~~al 255 (526) ......+|....|+++.....+..||.+.+..+......-....++-..|....+.|--+.+++ ...++++++.+.+.+ T Consensus 158 ~~~~~~~~~~diih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~~~~~~ 237 (467) T protein:vir:31 158 TGTSVSNPANELIFKRNHSPLYPHYGAPDIIPAVKTIRGDSAAQDYNIDFFENDGVPRIAIIVKGAELTEKGREEMRNLI 237 (467) T ss_pred ccceeEeccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHHHHHHHHHHH Confidence 1223456777776666555567789999999998887777777777777888888998777764 456888888888877 Q ss_pred HHhhc----------------CeEEEecCCce-----EEEeecCCCC--hHHHHHHHHHHHHHHHHHHhchhhhcccccc Q lcl|Aclame:pro 256 TGLGH----------------AAAGIIPETMA-----IDFQQAAQGS--SEPFLAMMRQSEDAISKAVLGGTLTSTTSQS 312 (526) Q Consensus 256 ~~~~~----------------~~~~iip~~~~-----ie~~~a~~~~--~~~~~~li~~~d~~Isk~ilGqtltt~~~~~ 312 (526) .+... ...++++.|++ ++|...+..+ -..|.+..++..++|+++...+.--++..+ T Consensus 238 ~~~~~~~~~~~~~~~~g~~n~~~~~~l~~g~~~~~~~~~~~~ls~~~~~d~qf~e~~~~~~~~Ia~~fgVpp~~lG~~~- 316 (467) T protein:vir:31 238 EDNNEDNHRTAFIETEKIVQNEDYLNLADGADRSDVEIRLEPLTVGIDEEASFLEFRGRNEHDILKVHDVPPVIAGVVE- 316 (467) T ss_pred HhhhcchhhhhhhhhcccccccccccccCCCcccccceeEEeccccChhhHHHHHHHHHHHHHHHHHhCCCHHHcccCC- Confidence 65432 23466676664 4554433222 235788888999999998765543332211 Q ss_pred cchhhh-hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhC Q lcl|Aclame:pro 313 GGGAFA-LG-QVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNV 390 (526) Q Consensus 313 ~~gS~a-~~-~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~ 390 (526) +++++ .. +.........+...++.|+..||+.|++.....+ ..+.+|.+......|.+..++.+.++++. T Consensus 317 -~~~~~s~~e~~~~~f~~~~l~P~~~~ie~~ln~~l~~~~~~~~-------~~~i~f~~~~l~~~d~~~~~~~~~~~~~~ 388 (467) T protein:vir:31 317 -SGAFSTDAEEQRKEFAEETIQPKQHDFGELLYELVHKQGLDAP-------DWTIEFELAKPDTKLQDVEIASQRVQAMQ 388 (467) T ss_pred -CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhccC-------CceEEEecchhhccCHHHHHHHHHHHHhC Confidence 22332 12 2222334566788899999999998776443321 11234555556668999999999999999 Q ss_pred CCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 391 GLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALADLPAKDMQNQANDLLA 470 (526) Q Consensus 391 G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (526) |+ ++.+++|+.+|+|+-.+ +...........................+......+...+.+... . -.+ T Consensus 389 G~-~T~NE~R~~~Gl~pi~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------~~~ 456 (467) T protein:vir:31 389 GL-LTVNELRDEFGFEPFPE-EHVYGGETLVAEVTGGSGPGGGIGDQIEQLVEDRADEIIDSYQAD----L------ETE 456 (467) T ss_pred CC-cCHHHHHHHhCCCCCCc-ccccCCcccccccccccCCCCcccCcCCCCCCCcccchHhhhhhc----c------ccc Confidence 97 99999999999986533 322211111111111100000111111111111111111211111 1 112 Q ss_pred HHHHHHHhcCC Q lcl|Aclame:pro 471 PLLEAVNRGDS 481 (526) Q Consensus 471 ~i~~~~~~a~s 481 (526) +..+.=.+|+| T Consensus 457 ~~~~~~~~~~~ 467 (467) T protein:vir:31 457 QLIEIGANADS 467 (467) T ss_pred hhhhhccccCC Confidence 34444455555 No 33 >protein:vir:102080 Length: 429 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512313;genbank:gi:89152482;genbank:GeneID:3953073 Probab=99.88 E-value=4.3e-22 Score=137.70 Aligned_cols=410 Identities=12% Similarity=0.062 Sum_probs=244.4 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+.+-.-+|. .+.+. ++...+......+..+. |.++ .| ..+..+-..+.+.|.+|+.. T Consensus 1 M~~~~~~f~~-~~r~~---~~~~~~~~~~~~~~~~~--g~~~-----------~~-----~~v~~~~al~~~~v~~~i~~ 58 (429) T protein:vir:10 1 MDSVKKFFNF-EKRQT---SQVIELNKDDEKLLEWL--GISP-----------ST-----ISVKGKNALKVATVFACIKI 58 (429) T ss_pred Cchhhhhhcc-cccCc---ccccccCCChHHHHHHh--cCCC-----------Cc-----ceechhhhhccHHHHHHHHH Confidence 7743233331 11110 11111111111111110 0010 00 00111111257889999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeee Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHH 155 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~ 155 (526) +-..|.+++|.+.-..++. ..+....-+...|+..| ...++++.++ +.+.+|.++++++++..| .+..|.+ T Consensus 59 ia~~ia~l~~~~~~~~~~~-~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G---~~~~L~~ 134 (429) T protein:vir:10 59 LSESVSKLPLKIYQEDEYG-IQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKG---KVQALWP 134 (429) T ss_pred HHHhhccCceEEEEecCCc-eeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCC---cEEEEEE Confidence 9999999999986433221 11111122334443322 2445666665 468899999999876544 3678899 Q ss_pred ecCceeEecccCCc------eEE-eccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 156 RPQSWFQLNPEDQN------ELR-LRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLE 228 (526) Q Consensus 156 r~~~~f~~~~~~~~------~l~-~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E 228 (526) .++.++.+..+... ... .....+....+++...|+.++....+..+|.|.+..+...+-.-....++...+.+ T Consensus 135 i~~~~v~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ 214 (429) T protein:vir:10 135 IDASKVTVYIDDVGLLNSKTKMWYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYK 214 (429) T ss_pred EcCceeEEEEcCcccccccceEEEEEccCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh Confidence 99887776543322 111 22223334568888877666666677788999999999988888888999999999 Q ss_pred HcCCceEEEecCCCCCHHHHHHHHHHHHHhh-----cCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhch Q lcl|Aclame:pro 229 IYGLPIRLGKYPPGTADEEKATLLRAVTGLG-----HAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGG 303 (526) Q Consensus 229 ~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~-----~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGq 303 (526) .-+.|--+.+++...++++++++.+.+...- ++.++|+|.|++++-+..+. .-..|.+..++..++|++++..+ T Consensus 215 ng~~~~~il~~~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~-~d~q~~e~~~~~~~~Ia~~fgVP 293 (429) T protein:vir:10 215 QGLQVKGLVQYVGDLNEDAKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNM-SDAQFLENTELTIRQIATAFGIK 293 (429) T ss_pred ccCCccEEEEcCCCCCHHHHHHHHHHHHHHhccccccCceeecCCCceEEEccCCh-hHHHHHHHHHHHHHHHHHHhCCC Confidence 9999999999998888888888888777642 23578999999887776432 22346677788899999998777 Q ss_pred hhhcccccccchhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHH Q lcl|Aclame:pro 304 TLTSTTSQSGGGAFALGQVHNE-VRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQ 382 (526) Q Consensus 304 tltt~~~~~~~gS~a~~~vh~~-v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~ 382 (526) ..-.+.. ..|+++..+-+.. ....-+...++.|+..||+.|+..-.. . ...+.+|.++.....|.+++++ T Consensus 294 ~~~lg~~--~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~kl~~~~~~---~----~g~~~~fd~~~ll~~d~~~~~~ 364 (429) T protein:vir:10 294 MHQLNDL--SKATLNNIEQQQQQFYTDTLQATLTMYEQEMTYKLFLDSEL---D----KGFYSKFNVDAILRADIKTRYE 364 (429) T ss_pred HHHhCCC--CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhc---C----CCcEEEeechhhhcCCHHHHHH Confidence 5444322 2345554443333 345677889999999999887643321 1 1122334444445678999999 Q ss_pred HHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccc-ccccccccccccccccc Q lcl|Aclame:pro 383 SIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQ-RVAALATIVGPRYGDQQ 447 (526) Q Consensus 383 ~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 447 (526) .++++++.|+ ++.+++|+.+|+|+-+.++....+....+........ +.+.............+ T Consensus 365 ~~~~~~~~G~-~T~NE~R~~~gl~p~~ggD~~~~~~n~~~~d~~~~~~~k~g~~~~~~~~~~~e~~ 429 (429) T protein:vir:10 365 AYRTGIQGGF-LKPNEARSKEDLPPEAGGDRLLVNGNMLPIDMAGQAYLKGGDTNGEVSKEGNEGN 429 (429) T ss_pred HHHHHHhCCC-cCHHHHHHHhCCCCCCCcCeeeecccccchhhccccccCCCCCCCCCCCCCCCCC Confidence 9999999998 9999999999999876666555433221111100000 00000000000111111 No 34 >protein:vir:483 Length: 413 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543090;swissprot:trembl:q8w629;genbank:gi:18249902;uniprot:Q8W629;genbank:GeneID:929685 Probab=99.88 E-value=1.5e-21 Score=134.81 Aligned_cols=395 Identities=9% Similarity=-0.038 Sum_probs=240.2 Q ss_pred cCccccc--hhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHc---ccCCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHh Q lcl|Aclame:pro 12 IRTQQLR--EPQTSRLAGLAKEFAQHPAKGLTPAKLARILVE---AEQGNLQAQAELFMDMEERDAHLFAEMSKRKRAIL 86 (526) Q Consensus 12 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~---a~~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~av~ 86 (526) +-++.+- +..+. . .++..+...+-. ...|.. +-.+...+-+.|.+|+..+-..|. T Consensus 1 ~~f~~~f~r~~~~~-~--------------~~~~~~~~~~~~~~~~~~g~~-----v~~~~~l~~~~v~~~i~~Ia~~iA 60 (413) T protein:vir:48 1 MFFSGLFQRKSDAP-V--------------TTPAELAEAIGLSYDTYTGKR-----ISSQRAMRLTAVYSCVRVLAESVG 60 (413) T ss_pred CccchhhccCccCC-c--------------cchHHHHHhhhcCcccccCce-----echhhhhccHHHHHHHHHHHHhhh Confidence 3222221 11110 0 011111111100 011110 111112257889999999999999 Q ss_pred cCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCcee Q lcl|Aclame:pro 87 GLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQSWF 161 (526) Q Consensus 87 ~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f 161 (526) ++++.+...+++... .....-+..+|+..| ...+++..+. +.+.+|.+++++++. .| .|..|.+.++.++ T Consensus 61 ~~p~~~~~~~~~~~~-~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~--~g--~~~~L~~l~~~~v 135 (413) T protein:vir:48 61 MLPCSLYKISGTLKT-RVVDERLHKLVSAKPNGYMTPQEFWELVIVCLCLRGNFYAYKVKA--LG--EVVELLPIDPGCV 135 (413) T ss_pred hCceEEEEecCCcce-eecccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCceEEEEEeC--CC--cEEEEEEEcCceE Confidence 999998765433211 111111233343222 2456666666 578899999998764 34 3678999999888 Q ss_pred EecccCCceEEeccCCCCc--eeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEec Q lcl|Aclame:pro 162 QLNPEDQNELRLRDNSPAG--EALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKY 239 (526) Q Consensus 162 ~~~~~~~~~l~~~~~~~~g--~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~ 239 (526) ++..+......++.....| ..+++...++.++. ..+.++|.|.+..+....-.-....++...|...-|.|--+.++ T Consensus 136 ~~~~~~~~~~~y~~~~~~g~~~~~~~~evih~~~~-~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~ 214 (413) T protein:vir:48 136 EPKLNSQWQPVYQVTFPDGSVDVLTQDEIWHVRTL-TLDGLVGLNPIAYAREAISLAAATEEHGARLFGNGAVTSGVLRT 214 (413) T ss_pred EEEEcCCceEEEEEEecCceEEEEccccEEEecCc-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEe Confidence 8766655555444332333 45777776655554 45568999999999998888888888888899999999999999 Q ss_pred CCCCCHHHHHHHHHHHHHhhc-----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccc Q lcl|Aclame:pro 240 PPGTADEEKATLLRAVTGLGH-----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGG 314 (526) Q Consensus 240 ~~~~~~~e~~~l~~al~~~~~-----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~ 314 (526) +...++++++++.+.+.+.-. +..++++.|++++-+..+ ..-..|.+..++..++|+.++..+.-..+. .+. T Consensus 215 ~~~~~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~-~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~--~~~ 291 (413) T protein:vir:48 215 EQKLTPDAYERLKKDFEERHTGLGNAHRPMILEMGLDWKSMALN-AEDSQFLETRKFQLEEICRLFRVPLHMVQN--TDR 291 (413) T ss_pred CCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEeccCC-hhHHHHHHHHHHHHHHHHHHhCCCHHHhCC--CcC Confidence 988899999888888776532 236888999887776533 223357788889999999998776533322 223 Q ss_pred hhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCc Q lcl|Aclame:pro 315 GAFALGQVHNE-VRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLE 393 (526) Q Consensus 315 gS~a~~~vh~~-v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~ 393 (526) ++++..+-+.. ....-+.-.++.|+..||+.|+++--. ...+-+|.++.....|.++++++++++++.|+ T Consensus 292 ~t~~n~e~~~~~f~~~~i~P~~~~ie~~l~~~L~~~~~~--------~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~g~- 362 (413) T protein:vir:48 292 ATFNNIEELGLGFINYSLVPYLTRIEQRINTGLVRESKQ--------GKFYAKFNAGALLRGDMKSRFEAYATGINWGI- 362 (413) T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc--------CCeEEEEechhhhccCHHHHHHHHHHHHhCCC- Confidence 55555443333 345577888899999999887753321 01122333334445688999999999999998 Q ss_pred CCHHHHHHHhCCCCCCccchhcccCCCccccccccccccccccccccccccc Q lcl|Aclame:pro 394 IPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGD 445 (526) Q Consensus 394 v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (526) ++.+++|+.+|+|+-+.++....+............ ............... T Consensus 363 ~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~~~~~-~~~~~~~~~~~~~~~ 413 (413) T protein:vir:48 363 YSPNDCRDLEDMNPRPGGDVYLTPMNMTTSPSAGDD-NGKKKESGDADKTAS 413 (413) T ss_pred cCHHHHHHHhCCCCCCCcceeecccccccccccccc-CCCCCCCCCccccCC Confidence 999999999999887777765543322111111000 000000000000000 No 35 >protein:vir:102118 Length: 409 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699943;genbank:gi:110804051;genbank:GeneID:4206661 Probab=99.88 E-value=1.2e-21 Score=135.37 Aligned_cols=390 Identities=11% Similarity=0.027 Sum_probs=236.2 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |- .-++++.+.. + +.. +...+..++.....|...-. +..+ +-+.|.+|+.. T Consensus 1 m~-----f~~~~~~~~~----~--~~~-------------~~~~~~~~~g~~~~~~~v~~----~~al-~~~~v~~~i~~ 51 (409) T protein:vir:10 1 ML-----FRKGFKNQSQ----E--ISI-------------DDKKILEWLGINPSETYVNG----KSCL-KQATVFGCIRI 51 (409) T ss_pred Cc-----ccccccCcCC----C--CCC-------------ChHHHHHHhcCCcCcceech----hhhh-ccHHHHHHHHH Confidence 33 1122221111 0 000 00011111110011100000 1112 47779999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeee Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHH 155 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~ 155 (526) +...|.+++|.|.-..++.. +....-+...|+..| ...++++.++ +.+.+|.++++++++..|. +..|.+ T Consensus 52 ia~~ia~lp~~~~~~~~~~~--~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~---~~~L~~ 126 (409) T protein:vir:10 52 LSDNISKLPIKIYQKKDGIK--RVPDHYLEYLLKLRPNPYMSSSDFWKCIEVQRNIYGNAYVALDFKKNGE---IKGLYP 126 (409) T ss_pred HHHhhhhCceEEEEecCCee--eccCchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCc---EEEEEE Confidence 99999999999864332211 111112233343222 2456776666 4788999999998865543 568999 Q ss_pred ecCceeEecccCCc------eE--EeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 156 RPQSWFQLNPEDQN------EL--RLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEML 227 (526) Q Consensus 156 r~~~~f~~~~~~~~------~l--~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~ 227 (526) .++.++++..+... .+ .+....+....+++...|+.++. ..+.++|.|.+..+...+-.-....++...+. T Consensus 127 i~~~~V~v~~~~~~~~~~~~~~~y~~~~~~g~~~~~~~~evih~r~~-~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f 205 (409) T protein:vir:10 127 LKSDGMKIFVDDTGLLNSENNVWYLYTDDLGQRHKFMSDEILHFKGL-TADGLAGLSVIELLNHLIENGKSSETYLNNFF 205 (409) T ss_pred EcCCceEEEEcCCccccccceEEEEEEeCCceeEEeccccEEEecCc-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHH Confidence 99888776543322 12 22223334456777776655544 45668999999999998888888888999999 Q ss_pred HHcCCceEEEecCCCCCHHHHHHHHHHHHHhhc-----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 228 EIYGLPIRLGKYPPGTADEEKATLLRAVTGLGH-----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLG 302 (526) Q Consensus 228 E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~-----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilG 302 (526) ...+.|--|.+++...++++++++.+.+.++.. ...+|++.|++++-+..+ ..-..|.+..++..++|++++.. T Consensus 206 ~ng~~~~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~-~~d~q~~e~~~~~~~~Ia~~fgV 284 (409) T protein:vir:10 206 KNGLQVKGLVQYAGDLNPEAEEVFKENFERMSSGLKNAHRIAMLPIGYKFEPISQK-LVDAQFLENSQLTIRQIASVFGV 284 (409) T ss_pred hccCCCcEEEEcCCCCCHHHHHHHHHHHHHHhccccccCCceecCCCceEEEccCC-hhhHHHHHHHHHHHHHHHHHhCC Confidence 999999999999988888888888888777532 347889999988776543 23345778888999999999877 Q ss_pred hhhhcccccccchhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHH Q lcl|Aclame:pro 303 GTLTSTTSQSGGGAFALGQVH-NEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMA 381 (526) Q Consensus 303 qtltt~~~~~~~gS~a~~~vh-~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a 381 (526) +.--.+.. +.++++..+.. ......-+...++.|+..||+.|+..-- .. ...+-+|.++.....|.++++ T Consensus 285 Pp~~lg~~--~~~~~~~~e~~~~~f~~~~l~P~~~~ie~~ln~kL~~~~~-~~------~~~~~~fd~~~ll~~d~~~~~ 355 (409) T protein:vir:10 285 KMHQLNDL--DRATHSNITEQNREFYIDTLQSILNMYELEINYKLFLISE-IK------NGFYSKFNVDTILRADIKTRY 355 (409) T ss_pred CHHHcCCC--CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh-cc------CCcEEEEechhhhccCHHHHH Confidence 64333222 23445544433 3334556778888899988887652211 00 111223333344457899999 Q ss_pred HHHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCccccccccccccccccccc Q lcl|Aclame:pro 382 QSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIV 439 (526) Q Consensus 382 ~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (526) +.+.++++.|+ ++.+++|+.+|+|+-+.++....+....+... .+.... ..+.. T Consensus 356 ~~~~~~~~~G~-~T~NE~R~~lgl~p~~ggD~~~~~~n~~~~~~--~~~~~~-kgGe~ 409 (409) T protein:vir:10 356 ESYKEAIQNGF-KTPNEIRELEEDEPLEGGDVLLINGNMIPVKM--AGEQYS-KGGEK 409 (409) T ss_pred HHHHHHHhCCC-cCHHHHHHHhCCCCCCCcCeeeeccCccchhh--cccccc-ccCCC Confidence 99999999998 99999999999998776665544332211111 010000 00000 No 36 >protein:vir:4454 Length: 414 # NCBI annotation: Portal Protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700377;genbank:gi:23505449;genbank:GeneID:955656 Probab=99.88 E-value=2.4e-21 Score=133.65 Aligned_cols=401 Identities=8% Similarity=-0.045 Sum_probs=240.6 Q ss_pred ecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHHHHHH Q lcl|Aclame:pro 5 VDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSKRKRA 84 (526) Q Consensus 5 ~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~a 84 (526) -+-.-+.++.+. +....++..+...+-... ... ....+..+...+-+.|.+|+..+-.. T Consensus 1 Mg~f~~lf~r~~-------------------~~~~~~~~~~~~~~~~~~-~~~-~g~~v~~~~al~~~~v~~~i~~Ia~~ 59 (414) T protein:vir:44 1 MVFFSGLFQRKS-------------------DAPVTTPAELADAIGLSY-DTY-TGKQISSQRAMRLTAVFSCVRVLAES 59 (414) T ss_pred CchhhhhhccCc-------------------cCcccchhhHhHhhccCc-ccc-CCceechhhhhccHHHHHHHHHHHHH Confidence 111111111111 111112222222211000 000 00111112223688899999999999 Q ss_pred HhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCc Q lcl|Aclame:pro 85 ILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQS 159 (526) Q Consensus 85 v~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~ 159 (526) |.++++.+...+++.. ......-+...|+..| ...++++.+. +.+.+|.+++.++.. +| .|..|.+.++. T Consensus 60 ia~~p~~~~~~~~~~~-~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gna~~~i~~~--~g--~~~~L~~l~~~ 134 (414) T protein:vir:44 60 VGMLPCNLYHLNGSLK-QRATGERLHKLISTHPNGYMTPQEFWELVVTCLCLRGNFYAYKVKA--FG--EVAELLPVDPG 134 (414) T ss_pred hccCceEEEEecCCce-eecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEeC--CC--cEEEEEEEcCc Confidence 9999999875443221 1111122233343222 3456677666 477899999888542 34 35689999998 Q ss_pred eeEecccCCceEEeccC--CCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEE Q lcl|Aclame:pro 160 WFQLNPEDQNELRLRDN--SPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLG 237 (526) Q Consensus 160 ~f~~~~~~~~~l~~~~~--~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vg 237 (526) ++....+..+.+.++.. .+....+++...++.++. ..+.++|.|.+..+....-.-....++...|....+.|--+. T Consensus 135 ~v~~~~~~~~~~~y~~~~~~g~~~~~~~~evih~~~~-~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil 213 (414) T protein:vir:44 135 CVVPKLNSSWEPVYQVTFPDGSTDVLSQEDIWHVRTL-TLDGLVGLNPIAYAREAISLAAATEEHGARLFSNGAVTSGVL 213 (414) T ss_pred eEEEEECCCCcEEEEEEecCceEEEEccccEEEecCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEE Confidence 87765544444444332 333456777776666654 456689999999999888888888888889999999999999 Q ss_pred ecCCCCCHHHHHHHHHHHHHhhc-----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccc Q lcl|Aclame:pro 238 KYPPGTADEEKATLLRAVTGLGH-----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQS 312 (526) Q Consensus 238 k~~~~~~~~e~~~l~~al~~~~~-----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~ 312 (526) +++...++++++++.+.+.+.-+ ...+++|.|++++-+..+ ..-..|.+..++..++|++++..+.--.+. + T Consensus 214 ~~~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~-~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~--~ 290 (414) T protein:vir:44 214 RTEQTLSDQAYERLKKDFEERHTGLGNAHRPMILEMGLDWKSMALN-AEDSQFLETRKFQLEEICRLFRVPLHMVQN--T 290 (414) T ss_pred EeCCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCC-hHHHHHHHHHHHHHHHHHHHhCCCHHHhCC--C Confidence 99998899988888887766532 236788999987766533 222357788889999999998776533322 2 Q ss_pred cchhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 313 GGGAFALGQVHNEV-RHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVG 391 (526) Q Consensus 313 ~~gS~a~~~vh~~v-~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G 391 (526) +.++++..+.+... ...-+.-.++.|+..||+.|++.-- ....+.+|.++.....|.+++++.++++++.| T Consensus 291 ~~~t~~n~e~~~~~~~~~~l~P~~~~ie~~ln~~L~~~~~--------~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G 362 (414) T protein:vir:44 291 DRATFNNIEELGLGFINYSLVPYLTRIEQRINTGLVRKSK--------QGVFYAKFNAGALLRGDMKSRFEAYATGINWG 362 (414) T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc--------cCceEEEEechhhhccCHHHHHHHHHHHHhCC Confidence 33556555544444 4567788889999999987764321 11122334444444578999999999999999 Q ss_pred CcCCHHHHHHHhCCCCCCccchhcccCCCccccccccccccccccccccccccc Q lcl|Aclame:pro 392 LEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGD 445 (526) Q Consensus 392 ~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (526) + ++.+++|+.+|+|+-+.++....+...... +.................... T Consensus 363 ~-~t~NE~R~~~gl~p~~ggD~~~~~~n~~~~-~~~~~~~~~~~~~~~~d~~~~ 414 (414) T protein:vir:44 363 I-YSPNDCRDLEDMNPRPGGDVYLTPMNMTTK-PSDGSKAGKQKDNANADETTS 414 (414) T ss_pred C-cCHHHHHHHhCCCCCCCcceeccccccccc-CCccccCCCCCCCCCCCCCCC Confidence 8 999999999999987767665533221111 111111011011111111111 No 37 >protein:vir:189 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037699;genbank:gi:9634156;genbank:GeneID:1262529 Probab=99.88 E-value=9.4e-22 Score=135.87 Aligned_cols=403 Identities=9% Similarity=-0.026 Sum_probs=239.5 Q ss_pred cchh-hhhhhh---hhhhhhhhhhhc--ccCHHHHHHHHHcc-cCCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 17 LREP-QTSRLA---GLAKEFAQHPAK--GLTPAKLARILVEA-EQGNLQAQAELFMDMEERDAHLFAEMSKRKRAILGLD 89 (526) Q Consensus 17 ~~~~-~~~~~~---~~~~~~~~~~~~--~l~~~~~~~~l~~a-~~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~av~~~~ 89 (526) ..+| -|-++. |....+..+... ..+|..-. ..... ..+... -..+-++-..+-+.|.+|+..+-..|.+++ T Consensus 1 ~~~~~~~~~~~~~~g~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~-~~~v~~~~al~~~~v~~cv~~Ia~~iA~lp 78 (424) T protein:vir:18 1 MEEPKYTIDLRTNNGWWARLKSWFVGGRLVTPNQGS-QTGPVSAHGYLG-DSSINDERILQISTVWRCVSLISTLTACLP 78 (424) T ss_pred CCCCccccccCCCCchHHHHHhhccccccccccchh-hccccccccccc-cccccHHHhhccHHHHHHHHHHHHhhccCc Confidence 2222 222222 222222222211 11222100 00000 000000 000111112357889999999999999999 Q ss_pred ceEecCCCCCHHHH-HHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCceeEe Q lcl|Aclame:pro 90 WAVEPPRNASAAEK-ADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQSWFQL 163 (526) Q Consensus 90 w~v~~~~~~~~~~~-~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~ 163 (526) |.|.-...+....+ ....-+...|+..| ...++++.++ +.+.+|.+++++++...| .+..|.+.++.++.. T Consensus 79 ~~vy~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G---~~~~L~~l~~~~v~v 155 (424) T protein:vir:18 79 LDVFETDQNDNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAG---DVISLLPLQSANMDV 155 (424) T ss_pred eEEEEeccCCceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCC---cEEEEEEecCcceEE Confidence 99864322211101 01111233343322 2345555555 678899999999875543 256899999988887 Q ss_pred cccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCC- Q lcl|Aclame:pro 164 NPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPG- 242 (526) Q Consensus 164 ~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~- 242 (526) ..+++.........+....+++...++.++.. .+..+|.|.+..+....-.-....++...|...-+.|--+.+++.+ T Consensus 156 ~~~~~~~~y~~~~~g~~~~~~~~eVihir~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~ 234 (424) T protein:vir:18 156 KLVGKKVVYRYQRDSEYADFSQKEIFHLKGFG-FTGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGEKV 234 (424) T ss_pred EEcCCeEEEEEEeCCeEEEeccccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCcC Confidence 66544332222223334568888776666544 5568999999999888888888888888999999999999999876 Q ss_pred CCHHHHHHHHHHHHHhhc----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhh- Q lcl|Aclame:pro 243 TADEEKATLLRAVTGLGH----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAF- 317 (526) Q Consensus 243 ~~~~e~~~l~~al~~~~~----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~- 317 (526) .++++++.+.+.+.++.+ ...+|++.|++++-++.+. .-..|.+..++...+|++++..+.--.+..+ ++|+ T Consensus 235 l~~e~~~~~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~-~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~--~~t~~ 311 (424) T protein:vir:18 235 LTEQQRSQVEENFKEIAGGPVKKRLWILEAGFSTSAIGVTP-QDAEMMASRKFQVSELARFFGVPPHLVGDVE--KSTSW 311 (424) T ss_pred CCHHHHHHHHHHHHHHhCCcccCCceeccCCceEEecCCCh-hHHHHHHHHHHhHHHHHHHhCCCHHHhCCCC--Ccccc Confidence 478888888777776532 2468999999887775432 3345778888999999999877654443222 2232 Q ss_pred -h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCC Q lcl|Aclame:pro 318 -A-LGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIP 395 (526) Q Consensus 318 -a-~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~ 395 (526) + ..+........-+.-.++.|+..||+.|++.-- ....+-+|.++..-..|.+++++.+.++++.|+ ++ T Consensus 312 ~sn~eq~~~~f~~~tl~P~~~~ie~~ln~~L~~~~~--------~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~-~T 382 (424) T protein:vir:18 312 GSGIEQQNLGFLQYTLQPYISRWENSIQRWLIPSKD--------VGRLHAEHNLDGLLRGDSASRAAFMKAMGESGL-RT 382 (424) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc--------cCCeEEEEechhhhccCHHHHHHHHHHHHhCCC-cC Confidence 2 223333445677788889999999988765321 112233444444456789999999999999998 99 Q ss_pred HHHHHHHhCCCCCCccchhcccCCCccccccccccccccccccccc Q lcl|Aclame:pro 396 SAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGP 441 (526) Q Consensus 396 ~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (526) .+++|+.+|+|+-+.+++...+....+.... +... .....++ T Consensus 383 ~NE~R~~~gl~pi~ggD~~~~~~n~~~l~~~--~~~~--~~~~n~a 424 (424) T protein:vir:18 383 INEMRRTDNMPPLPGGDVAMRQAQYVPITDL--GTNK--EPRNNGA 424 (424) T ss_pred HHHHHHHhCCCCCCCcCeeeeccCccchhhh--hccC--CccccCC Confidence 9999999999987666655433221111100 0000 0000000 No 38 >protein:vir:81152 Length: 411 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285809;genbank:gi:148747730;genbank:GeneID:5247195 Probab=99.88 E-value=5.4e-22 Score=137.20 Aligned_cols=389 Identities=13% Similarity=0.079 Sum_probs=241.1 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+ +.+..-+.++.+.- +.. ++..-+...+ .++.... +.. .+-+.|.+|+.. T Consensus 1 MG-~~~~~~~~~~~~~~----~~~---------------~~~~~~~~~~----g~~~~~~----~~a-l~~~~V~~~v~~ 51 (411) T protein:vir:81 1 MG-WWSRLTRFFRPRNE----TVD---------------MTNPLLLQWL----GVDPDTP----RNQ-LSEATYFACLKI 51 (411) T ss_pred Cc-hHHHHHhhccCccc----ccc---------------cchHHHHHHh----cCcccCh----hhh-hccHHHHHHHHH Confidence 76 44332121211110 000 0000000110 0110000 111 257889999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeee Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHH 155 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~ 155 (526) +-..|.+++|.+....++... +....-+...|+..| ...++++.+. +.+++|.+.++++++ +|. +..|.+ T Consensus 52 Ia~~iA~lp~~~~~~~~~~~~-~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~--~g~--~~~l~~ 126 (411) T protein:vir:81 52 LSESLGKLPLKMYQKTERGIV-KSDREELYNLLKLRPNPYMTSSVFWSTVEMNRNHYGNAYVWCQYS--GPQ--LQALWI 126 (411) T ss_pred HHHhHhhCceeEEEecCCcee-eecccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEec--CCc--eEEEEE Confidence 999999999999754332111 111122333343322 3567777666 578899999999864 443 567889 Q ss_pred ecCceeEecccCCceE------Ee-ccC--CCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 156 RPQSWFQLNPEDQNEL------RL-RDN--SPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEM 226 (526) Q Consensus 156 r~~~~f~~~~~~~~~l------~~-~~~--~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f 226 (526) .++.++++..++...+ .+ ... .+....+++...|+.++....+..+|.|.+..+....-.-....++...| T Consensus 127 l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~eiih~k~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~ 206 (411) T protein:vir:81 127 LPSQYVTIVVDDRGLLGEKNAIWYRYNDPYDGKMYVFRNDEILHFKTSVTFDGITGLSVRDVLKHTVDGALESQKFMNNL 206 (411) T ss_pred ECCceEEEEEcCcccccccceEEEEEEecCCceEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHH Confidence 9998887765543321 11 111 22233567777666665666677899999999999999999999999999 Q ss_pred HHHcCCceEEEecCCCCCHHHHHHHHHHHHHhhc-----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 227 LEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGH-----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVL 301 (526) Q Consensus 227 ~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~-----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~il 301 (526) ...-+.|--+.+++...++++++++.+.+.+..+ ...+|++.|++++-+..+. .-..|.+..++..++|++++. T Consensus 207 f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~-~d~q~~e~~~~~~~~Ia~~fg 285 (411) T protein:vir:81 207 YKTGLTGKAVLEYTGDLNQEARDRLVKGFEQFANGSKNAGKIIPVPLGMKLVPLDIKL-TDSQFFELKKYTALQIAAAFG 285 (411) T ss_pred HhccCCCceEEEeCCCCCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCCH-HHHHHHHHHHHHHHHHHHHhC Confidence 9999999999999988899998888888887533 2368889998887775332 223567788899999999987 Q ss_pred chhhhcccccccchhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecC--ccccCHH Q lcl|Aclame:pro 302 GGTLTSTTSQSGGGAFALGQVHNEV-RHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDL--REQADIT 378 (526) Q Consensus 302 Gqtltt~~~~~~~gS~a~~~vh~~v-~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~--~e~edl~ 378 (526) .+.-..+.. ..++++..+.+... ...-+...+..|+..||+.|+..-.. . .. .+|+|+. -...|.+ T Consensus 286 VPp~~lg~~--~~~t~~n~e~~~~~f~~~~l~P~~~~ie~~l~~~ll~~~~~-~------~~--~~~~fd~~~ll~~d~~ 354 (411) T protein:vir:81 286 IKPNQINDY--EKSSYASAEAQNLAFYVDTLLYVLKQYEEEITYKILSNDLI-S------QG--HYFKFNVNVILRADIK 354 (411) T ss_pred CCHHHhCCC--CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhc-C------CC--cEEEeechhhhccCHH Confidence 775444322 23566665544433 45567788889999998887643211 1 11 1345443 3457899 Q ss_pred HHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCccccccccccccccccccc Q lcl|Aclame:pro 379 SMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIV 439 (526) Q Consensus 379 ~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (526) ++++.+++++..|+ ++.+++|+.+|+|+-+.++....+....+ ... .+.... ..+.. T Consensus 355 ~~~~~~~~~~~~g~-~t~NE~R~~~gl~p~~ggD~~~~~~n~~p-l~~-~~~~~~-kgGd~ 411 (411) T protein:vir:81 355 TQMDSLSTAVQNGI-MTPNEARDYLDMPADDYGNNLMANGNYIP-LSM-LGANYG-KGGDS 411 (411) T ss_pred HHHHHHHHHHhCCC-cCHHHHHHHhCCCCCCCCCeeeeccCccc-hhh-hhhhhc-cCCCC Confidence 99999999999997 99999999999997666665443322111 110 000000 00000 No 39 >protein:vir:1884 Length: 424 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037664;genbank:gi:9634122;genbank:GeneID:1262519 Probab=99.88 E-value=9.5e-22 Score=135.83 Aligned_cols=402 Identities=9% Similarity=-0.042 Sum_probs=237.0 Q ss_pred cchh-hhhhhh---hhhhhhhhhhh--cccCHHHHH---HHHH-cccCCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHh Q lcl|Aclame:pro 17 LREP-QTSRLA---GLAKEFAQHPA--KGLTPAKLA---RILV-EAEQGNLQAQAELFMDMEERDAHLFAEMSKRKRAIL 86 (526) Q Consensus 17 ~~~~-~~~~~~---~~~~~~~~~~~--~~l~~~~~~---~~l~-~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~av~ 86 (526) ..+| -|-.+. +....+..+.. +..+|..-. .+.- ....|. .+-.+-..+.+.|.+|+..+-..|. T Consensus 1 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~al~~~~v~~cv~~Ia~~iA 75 (424) T protein:vir:18 1 MEEPKYTIDLRTNNGWWARLQSWFVGGRLVTPNQGSQTGPVSAHGHLGDS-----SINDERILQISTVWRCVSLISTLTA 75 (424) T ss_pred CCCCcceEeecCCCchHHHHHhhhcccccccccccccccccccccccccc-----cccHHHhhccHHHHHHHHHHHHhhc Confidence 1111 111111 22222211111 111111100 0000 000010 1111222368889999999999999 Q ss_pred cCCceEecCCCCCHHHH-HHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCce Q lcl|Aclame:pro 87 GLDWAVEPPRNASAAEK-ADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQSW 160 (526) Q Consensus 87 ~~~w~v~~~~~~~~~~~-~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~ 160 (526) +++|.+.-...+....+ ....-+...|+..| ...++++.++ +.+.+|.++++++++..| .+..|.+.++.+ T Consensus 76 ~lp~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G---~~~~L~pl~~~~ 152 (424) T protein:vir:18 76 CLPLDVFETDQNDNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAG---DVISLLPLQSAN 152 (424) T ss_pred cCceEEEEeecCCceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCC---cEEEEEEecCcc Confidence 99999864332211111 01111233343322 2445666555 678899999999886553 256899999988 Q ss_pred eEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecC Q lcl|Aclame:pro 161 FQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYP 240 (526) Q Consensus 161 f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~ 240 (526) +....+++.........+....+++...|+.++. ..+..+|.|.+..+....-.-....++...|...-+.|--+.+++ T Consensus 153 V~v~~~~~~~~y~~~~~g~~~~~~~~eIih~r~~-~~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~ 231 (424) T protein:vir:18 153 MDVKLVGKKVVYRYQRDSEYADFSQKEIFHLKGF-GFTGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTG 231 (424) T ss_pred eEEEEcCCeEEEEEEeCCeEEEeccccEEEecCc-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeC Confidence 8876655433322223333456788776655554 456689999999999888887888888888999999999999998 Q ss_pred CC-CCHHHHHHHHHHHHHhhc----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccch Q lcl|Aclame:pro 241 PG-TADEEKATLLRAVTGLGH----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGG 315 (526) Q Consensus 241 ~~-~~~~e~~~l~~al~~~~~----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~g 315 (526) .+ .++++++.+.+.+.++.+ +..+|++.|++++-+..+. .-..|.+..++..++|++++..+.--.+..++++. T Consensus 232 ~~~l~~e~~~~~~~~~~~~~~g~nag~~~vl~~g~~~~~l~~~~-~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~ 310 (424) T protein:vir:18 232 EKVLTEQQRSQVEENFKEIAGGPVKKRLWILEAGFSTSAIGVTP-QDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTS 310 (424) T ss_pred CcCCCHHHHHHHHHHHHHHhCCcccCCceeccCCceEEecCCCh-hHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccc Confidence 76 578888888877776532 2468999999887776432 23357778889999999998776544432222111 Q ss_pred hhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcC Q lcl|Aclame:pro 316 AFAL-GQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEI 394 (526) Q Consensus 316 S~a~-~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v 394 (526) +++. .+........-+...++.|+..||+.|++..- ....+-+|.++..-..|.+++++.+.++++.|+ + T Consensus 311 ~~sn~eq~~~~f~~~tl~P~~~~ie~~l~~~L~~~~~--------~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~-~ 381 (424) T protein:vir:18 311 WGSGIEQQNLGFLQYTLQPYISRWENSIQRWLIPAKD--------VGRIHAEHNLDGLLRGDSASRAAFMKAMGEAGL-R 381 (424) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc--------cCCeEEEEechhhhccCHHHHHHHHHHHHhCCC-c Confidence 1122 22223334667788899999999988865421 011233333334445789999999999999998 9 Q ss_pred CHHHHHHHhCCCCCCccchhcccCCCccccccccccccccccccccc Q lcl|Aclame:pro 395 PSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGP 441 (526) Q Consensus 395 ~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (526) +.+++|+.+|+|+-+.++....+....+.... +... ......+ T Consensus 382 T~NE~R~~~gl~pi~gGD~~~~~~n~~~l~~~--~~~~--~p~~~ga 424 (424) T protein:vir:18 382 TINEMRRTDNLPPLPGGDVAMRQSQYVPITDL--GTNK--EPRNNGA 424 (424) T ss_pred CHHHHHHHhCCCCCCCcCeeeeccCccchHhh--hccC--CCccCCC Confidence 99999999999987666655433221111100 0000 0000000 No 40 >protein:vir:3843 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050149;swissprot:trembl:q9t1f8;genbank:gi:9633041;uniprot:Q9T1F8;genbank:GeneID:1262206 Probab=99.87 E-value=1.8e-21 Score=134.28 Aligned_cols=385 Identities=12% Similarity=0.011 Sum_probs=228.0 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+ +.+...+--+.. .++...|...+.....|.. +..+-..+-+.|.+|+.. T Consensus 1 M~-~f~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~-----v~~~~al~~~~V~~~v~~ 51 (397) T protein:vir:38 1 MP-LLKLNKSHSQGF-----------------------SLNDPDWVNFLTGGEAQKY-----VSADTALKNSDIFSLIMQ 51 (397) T ss_pred Cc-chhhhhcccCcc-----------------------cCCchhhhhhhcCCcCCce-----echHHhhccHHHHHHHHH Confidence 77 444322110000 0000111222211111111 000111257889999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCc Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQS 159 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~ 159 (526) +-..|.+++|.+... ....+....-..+ .+.++++.+. +.+.+|.++++++++..+ .+..+.+.++. T Consensus 52 ia~~ia~~p~~~~~~--------~~~~l~~~PN~~~-s~~~f~~~~~~~lll~Gna~~~i~r~~~g---~~~~l~~l~~~ 119 (397) T protein:vir:38 52 LSGDLAMVRYTSESD--------RSQSIISNPSVTA-NGYSFWQGMFAQLLLDGNCYAYRHKNTNG---VDLSWEYLRPS 119 (397) T ss_pred HHHHHhhCccccccc--------HHHHHHhcCCCCC-CHHHHHHHHHHHhhhcCCEEEEEEECCCC---cEEEEEEEcCc Confidence 999999999977521 1222222211112 3567777766 567799999999986544 36789999998 Q ss_pred eeEecccCC-ceEEec---cCCCC--ceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCc Q lcl|Aclame:pro 160 WFQLNPEDQ-NELRLR---DNSPA--GEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLP 233 (526) Q Consensus 160 ~f~~~~~~~-~~l~~~---~~~~~--g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P 233 (526) .++...+.. ..+.++ .+... ...+++...|++++....+..||.|.+..+....-......++...|....|+| T Consensus 120 ~v~i~~~~~~~~~~y~~~~~~~~~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~ 199 (397) T protein:vir:38 120 QVQPMLLQDGSGLIYNINFDEPAIGYMENVPAADVIHIRLLSKNGGKTGISPLSALINEQQIKDASNELTLKALKQSVTA 199 (397) T ss_pred eeEEEEcCCCceEEEEEEeccccccceeEecCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCc Confidence 876654322 223222 11122 245788887777777767778999999999999999999999999999999999 Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHhh----cCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhccc Q lcl|Aclame:pro 234 IRLGKYPPGTADEEKATLLRAVTGLG----HAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTT 309 (526) Q Consensus 234 ~~vgk~~~~~~~~e~~~l~~al~~~~----~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~ 309 (526) --+.+++...++++++.+.+...... ++..+|++.|++++-++.+ .....|.+..++..++|++++..+.--.+. T Consensus 200 ~~il~~~~~~~~e~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~-~~d~~~~e~~~~~~~~Ia~afgVp~~~lg~ 278 (397) T protein:vir:38 200 SAVLTIQKGGLLDAETRIARSKEISKQIHNSDGPVVIDALEDYKPLEVK-GNIASLLNQVDWTRDQIAKVYGVPDSYLNG 278 (397) T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHHhcccccCCceecCCCceEEecCCC-hhHHHHHHHHHHHHHHHHHHhCCCHHHhCC Confidence 99999999888888877776665442 2346788888877766533 333457888999999999997665433321 Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHh Q lcl|Aclame:pro 310 SQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVN 389 (526) Q Consensus 310 ~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~ 389 (526) .+ ++++..+-........+.-.+..|+..||+.|++.. .++ +.+ .-..|.+.+++.++++++ T Consensus 279 ~~---~~~~~~e~~~~~~~~~l~P~~~~ie~~ln~~l~~~~-~~~------------~~~--~~~~d~~~~~~~~~~~~~ 340 (397) T protein:vir:38 279 QG---DQQSSITQISGQYAKSLNRYVQAIVGELNDKLHANI-SAN------------IRF--AIDAMGDQYASTISSSVK 340 (397) T ss_pred CC---CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh-ccc------------ccc--cccCCHHHHHHHHHHHHh Confidence 11 112211212223345777888999999998776532 111 222 223578899999999999 Q ss_pred CCCcCCHHHHHHHhCCCCCCccchhcccC-CCcccccccccccccccccccccccccccchHH Q lcl|Aclame:pro 390 VGLEIPSAWVYDKLGIPQPAKNEPVLRSA-AQPAILSRQHGQRVAALATIVGPRYGDQQALDK 451 (526) Q Consensus 390 ~G~~v~~~~~~e~~Glp~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (526) .|+ ++.+++|+.+|+|+-..++...... ..+................... .. ..++ T Consensus 341 ~G~-~t~nE~R~~lg~~p~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~~~e--~~---~~~~ 397 (397) T protein:vir:38 341 GGT-IAGNQARFILQNSGYLAKDLPDPEKEPQQAIQLIQQEGGENDGNNSDE--RG---SDPE 397 (397) T ss_pred CCC-cCHHHHHHHhCCCCCCCCccccccccccccccccccccCCCCCCCCCC--CC---CCCC Confidence 997 8999999999998755444221111 1111111100000000000000 00 0011 No 41 >protein:vir:5737 Length: 419 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892048;genbank:gi:33770511;goa:Q7Y412;interpro:IPR006427;interpro:IPR006944;uniprot:Q7Y412;genbank:GeneID:1732929;interpro:IPR010994 Probab=99.87 E-value=1.8e-21 Score=134.30 Aligned_cols=404 Identities=9% Similarity=-0.085 Sum_probs=234.4 Q ss_pred cCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHHHHHHH Q lcl|Aclame:pro 6 DVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSKRKRAI 85 (526) Q Consensus 6 ~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~av 85 (526) =-..+-++.+.. .+...-.... .++. ..-.. .|.. +-.+...+-+.|.+|+..+-..| T Consensus 1 m~~~~~~~~~~~-----~~~~~~~~~~-----~~~~-----~~~~~--~g~~-----v~~~~al~~~~v~~~i~~ia~~i 58 (419) T protein:vir:57 1 MFIPQFWKGRPS-----ENRVNWQVVP-----GGMR-----SSSSQ--AGVI-----ITPETALALSAVRACVTLLAESV 58 (419) T ss_pred CcchhhhccCCc-----cccccccccc-----cccc-----ccccc--CCce-----echHHhhccHHHHHHHHHHHHhh Confidence 000111111111 0000000000 0000 00000 1110 00111125678999999999999 Q ss_pred hcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCce Q lcl|Aclame:pro 86 LGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQSW 160 (526) Q Consensus 86 ~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~ 160 (526) .+++|.+.-...+...+.....-+...|+..| ...++++.+. +.+.+|.+++++++...| .|..|.+.++.+ T Consensus 59 a~lp~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G---~~~~L~pl~~~~ 135 (419) T protein:vir:57 59 AQLPCVLYRRTENGGREIAFDHPLHDLIRYQPNRKDTAFEYHEQTQGVLGLEGNSYSLIDRNGRG---DITELIPINPHK 135 (419) T ss_pred ccCceEEEEEcCCCceeccccchHHHHHhhccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCC---cEEEEEEEcCcc Confidence 99999985432221111111112333343322 2456666666 677899999999876544 367899999998 Q ss_pred eEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecC Q lcl|Aclame:pro 161 FQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYP 240 (526) Q Consensus 161 f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~ 240 (526) ++...+..+.+.++. ...+..++....++.++ ...+..+|.|.+..+....-.-....++...|...-|.|--+.++| T Consensus 136 v~v~~~~~g~~~y~~-~~~~~~~~~~~vih~r~-~~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~ 213 (419) T protein:vir:57 136 VIVLKGPDGMPYYDI-PSIGEILPMRMVHHIKS-FSLDGYIGTSPIQTNPDVLGLGIAVEQHAAQVFARGTTMSGVIERP 213 (419) T ss_pred eEEEECCCceEEEEE-cCCceEEchhhEEEecC-cCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEec Confidence 888776655554443 33455666665554444 4456689999999999888888888888899999999998888875 Q ss_pred C----CCCHHHHHHHHHHHHHhhc-----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhccccc Q lcl|Aclame:pro 241 P----GTADEEKATLLRAVTGLGH-----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQ 311 (526) Q Consensus 241 ~----~~~~~e~~~l~~al~~~~~-----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~ 311 (526) . ..++++++++.+.+.+... ...+|++.|++++-++.+ ..-..|.+..++..++|++++..+.--.+.. T Consensus 214 ~~~~~~~~~e~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~-~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~- 291 (419) T protein:vir:57 214 FEAKAIASQAAVDAILAKWTERYGGVRNAFSVGMLQEGMTYKQLSQD-NEKAQLLQSRQYTVNEVCRLYKVPPHMIQDL- 291 (419) T ss_pred CcCCcccCHHHHHHHHHHHHHHhccccccccceecCCCceEEEcCCC-hhhHHHHHHHHHHHHHHHHHhCCCHHHhCCC- Confidence 4 3466777777777665422 357888999887666532 2233578888899999999987765433322 Q ss_pred ccchhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhC Q lcl|Aclame:pro 312 SGGGAFALGQVHNEV-RHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNV 390 (526) Q Consensus 312 ~~~gS~a~~~vh~~v-~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~ 390 (526) +.++++..+-+... ...-+.-.++.|+..||+.|+.+--. ...+.+|.++.....|.+.+++.++++++. T Consensus 292 -~~~t~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~ll~~~~~--------~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~ 362 (419) T protein:vir:57 292 -QKSTNNNIEHQGLQYVIYTMLAILKRHESAMMRDLLLPSER--------RDFYIEFNVSSLLRGDQKSRYESYALGRQW 362 (419) T ss_pred -CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc--------CCeEEEEechhhhccCHHHHHHHHHHHHhC Confidence 23455544444443 35667888888888888877643211 112233444444467999999999999999 Q ss_pred CCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccccccchHHHHHHHHHHH Q lcl|Aclame:pro 391 GLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALADLPAKD 460 (526) Q Consensus 391 G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (526) |+ ++.+++|+.+|+|+-+.++.++.+.............+.. +...+..+... ..+. T Consensus 363 G~-~T~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~~~~~~~~------~~~~~~~~~~~------~~~~ 419 (419) T protein:vir:57 363 GW-LSVNDIRRMENLTPIPGGDKYLTPLNMVDSKALTGIGKAT------PQQLKDIEAIL------CTRN 419 (419) T ss_pred CC-cCHHHHHHHhCCCCCCCcCeeeeccccccccccccccCCC------cccCcchhhhh------hccC Confidence 97 9999999999999877777665432211100000000000 00000000000 0000 No 42 >protein:vir:4509 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599035;genbank:gi:19548993;genbank:GeneID:935206 Probab=99.87 E-value=2.2e-21 Score=133.86 Aligned_cols=399 Identities=11% Similarity=-0.005 Sum_probs=240.5 Q ss_pred CCe-eecCCCCc----------cCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHh Q lcl|Aclame:pro 1 MAQ-IVDVYGNP----------IRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEE 69 (526) Q Consensus 1 m~~-~~~~~g~p----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~ 69 (526) |-- +.-++-.| |+.+.++.|.++-.+. .+. ..+++ . .|. . +-.+... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~---~~~---~~~~~---------~--~~~-~----vs~~~al 58 (424) T protein:vir:45 1 MLYCWWAHWLWPEGGRVLLDALFRSKSLENPSTPITGD---AVD---TDGLF---------R--ADV-Y----VSPETAM 58 (424) T ss_pred CeeEeeeceecCcchhHHHHhhccccCCCCCccccchh---hhh---hhccc---------c--CCc-e----echHHhh Confidence 321 12233333 3333333333221100 000 00110 0 010 0 0111112 Q ss_pred ccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeec Q lcl|Aclame:pro 70 RDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQ 144 (526) Q Consensus 70 ~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~ 144 (526) +-+.|.+|+..+-..|.+++|.|.-.+++..+ +....-+.+.|+..| ...++++.+. +.+.+|.++++++++.. T Consensus 59 ~~~~v~~cv~~Ia~~iA~lp~~v~~~~~~~~~-~~~~~~l~~lL~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~ 137 (424) T protein:vir:45 59 KLAAVYSCIYVLSSSLAQMPLHVMRRHKGKVE-PARDHPAFYLVHDEPNTWQTSYKWRELKQRHILGWGNGYTWVKRNRR 137 (424) T ss_pred ccHHHHHHHHHHHHHHhhCceEEEEecCCcee-ecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCC Confidence 57789999999999999999998643322211 111122334444322 2345555544 67889999999987654 Q ss_pred CCeeEEeeeeeecCceeEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 145 GREWMPLAFHHRPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLA 224 (526) Q Consensus 145 ~g~~~~~~l~~r~~~~f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~ 224 (526) | .+..|.+.++..+++..+++..............+++...++.++. ..+..+|.|.+..+....-.-....++.. T Consensus 138 G---~~~~L~~l~~~~v~i~~~~~~~~y~~~~~~~~~~~~~~eVih~r~~-~~d~~~G~spi~~~~~~i~~~~~~~~~~~ 213 (424) T protein:vir:45 138 G---EVISLDCCMPWETTLMNTGGRYTYGLYNEYGAFAISPDDMIHIRAL-GNNQKMGLSPIMQHAETIGMGMSGQKYTE 213 (424) T ss_pred C---cEEEEEEecCceEEEEEcCCeEEEEEEecCceEEECcccEEEecCc-CCCCcccccHHHHHHHHHHHHHHHHHHHH Confidence 3 3567889988888776655443322222223345777776555554 45678999999999988888888888888 Q ss_pred HHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHhh----c--CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 225 EMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLG----H--AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISK 298 (526) Q Consensus 225 ~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~----~--~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk 298 (526) .|...-+.|--|.+++...++++++.+.+.+.+.. . +..+|++.|++++-++.+. .-..|.+..++...+|++ T Consensus 214 ~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~~n~g~~~vl~~g~~~~~l~~~~-~d~q~~e~~~~~~~~Ia~ 292 (424) T protein:vir:45 214 SFFSGNARPAGIVSVKSGLNKESWGWLKDQWQKASQALRRQENKTMLLPADLDYKALTVSP-VDAQIIDMMKLNRSMIAG 292 (424) T ss_pred HHHhccCCccEEEEeCCCCCHHHHHHHHHHHHHHhccccccCCceeEcCCCceEEEccCCh-hHHHHHHHHHHHHHHHHH Confidence 99999999999999999889988888777665432 2 2477889998877775432 223477788899999999 Q ss_pred HHhchhhhcccccccchhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecC--cccc Q lcl|Aclame:pro 299 AVLGGTLTSTTSQSGGGAFALGQVHNE-VRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDL--REQA 375 (526) Q Consensus 299 ~ilGqtltt~~~~~~~gS~a~~~vh~~-v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~--~e~e 375 (526) ++..+.--.+.. ..++++..+-+.. ....-+...++.|+..||+.|+..--... .. +|+|+. .-.. T Consensus 293 ~fgVPp~~lg~~--~~~t~sn~eq~~~~f~~~tL~P~~~~ie~~ln~kLl~~~e~~~-------g~--~i~fd~~~llr~ 361 (424) T protein:vir:45 293 IFNIPAHMINDL--EKATFSNISAQAIQFVRYTMMPWVTNWEQELNRRLFTRAELAA-------GY--YVRFNLTGLLRG 361 (424) T ss_pred HhCCCHHHhCCC--CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcC-------Cc--EEEeechhhhcc Confidence 987765444322 2344544333333 34556888889999999988775321110 11 345543 3356 Q ss_pred CHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccccccchHH Q lcl|Aclame:pro 376 DITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDK 451 (526) Q Consensus 376 dl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (526) |.+++++.+.++++.|+ ++.+++|+.+|+|+-+.+++.+.+.....+.....+ +..+..+ .++ T Consensus 362 d~~~r~~~~~~~~~~g~-~T~NE~R~~~gl~pi~ggD~~~~~~n~~~~~~~~~~-----------~~~~~~~-~~~ 424 (424) T protein:vir:45 362 TPQERAQFYHFAITDGW-MSRNEARAFEDMNPVEGLDEMLVSVNAANPAGDFKP-----------PKNDEGK-TNE 424 (424) T ss_pred CHHHHHHHHHHHHhCCC-cCHHHHHHHhCCCCCCCcceeeecccccccccccCC-----------CCCCCCC-CCC Confidence 89999999999999997 999999999999987777766554321111000000 0000000 000 No 43 >protein:vir:101647 Length: 460 # NCBI annotation: phage portal protein # Family: family:all:26542 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112492;genbank:gi:53793592;uniprot:Q5ZGG1;genbank:GeneID:3101755 Probab=99.87 E-value=2e-20 Score=128.57 Aligned_cols=406 Identities=9% Similarity=0.018 Sum_probs=236.7 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+.+++...+.- + .... +....|..+....++ |........-.....+-+.|.+|+.. T Consensus 1 ~~~~~~~~~~~~---~--~~~~----~~~~~~~~~~g~~~~-------------~~~~~~~~~~~~~a~~~~~v~~~v~~ 58 (460) T protein:vir:10 1 MANRIIRALREL---T--GLDN----KFNDAFIKYIGQTFT-------------KYDNNGKTYLEQGYNINPDVYSCISQ 58 (460) T ss_pred CchhHHHHHhhh---h--ccCC----CchHHHHHhhccccC-------------CCccchhhhhHHHHhcchHHHHHHHH Confidence 776554442211 0 0000 001112111111111 11111122222223467899999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHH--------------------------HHHHHHHHHhcCc----CHHHHHHHHH-Hh Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKA--------------------------DADYLHELLLDLE----GLEDLLLDAL-DG 129 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~--------------------------~a~~v~~~l~~~~----~~~~~i~~~l-da 129 (526) +-..|.+++|.|.....+....+. ..+-+...|...| ...++++.++ +. T Consensus 59 ia~~iA~lp~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~~~~~l 138 (460) T protein:vir:10 59 MAAKTVAVPYTIKVVKDTKAYQQLNNLNISTKGLYSFTQSLQKNRLDTKAFSETEKAFPLESPNPTQTWADIYSLYKTYM 138 (460) T ss_pred HHHhhhhCceEEEeccCCccchhhhhhhhhhhhhHHHHHHhhcchhhhcccchhHHHHHHhCCCCCCCHHHHHHHHHHHH Confidence 999999999999754433211100 0001111222222 2557777666 68 Q ss_pred hhhcceeeeEEEeecC-CeeEEeeeeeecCceeEecccCCceEEec---------cCCCCceeecCCCeEEEeecCCC-- Q lcl|Aclame:pro 130 IGHGYSCIELEWALQG-REWMPLAFHHRPQSWFQLNPEDQNELRLR---------DNSPAGEALQPFGWIIHRPRARS-- 197 (526) Q Consensus 130 ~~~G~s~~Ei~w~~~~-g~~~~~~l~~r~~~~f~~~~~~~~~l~~~---------~~~~~g~~lp~~k~i~~~~~~~~-- 197 (526) +.+|.+.+++++...+ +.-.+..|.+.++.++++..+.+...+.. ..+.....+++...|++++.... T Consensus 139 ll~Gnay~~i~r~~~~~~~G~~~~L~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~evih~r~~~~~~~ 218 (460) T protein:vir:10 139 RLNGNCYFYLMSPDDGINAGVPSQMYVLPAHLIKIVLKDDINLLSTDSPIKSYMLIQGDQFIEFNEDEVIHTKYANPNFD 218 (460) T ss_pred hhcCCeEEEEEecCCCccCceeEEEEEEcCceEEEEEcCCCceeeeeeeeeEEEEecCceeEEecccceEEEecCCCCcc Confidence 8899999999876543 22356789999999888876554432221 12233456788887766654332 Q ss_pred ---CccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHhhc-----CeEEEecCC Q lcl|Aclame:pro 198 ---GYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGH-----AAAGIIPET 269 (526) Q Consensus 198 ---g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~-----~~~~iip~~ 269 (526) +..+|.|.+..+......-....++...|...-+.|--+.+++...++++++++.+.+.+.-+ +..++++.| T Consensus 219 ~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g 298 (460) T protein:vir:10 219 LQGSHLYGMSPIRAILRNINSQNSTIDNNVKTMQNGGVFGFIHGGSTGLTQPQADSLKQRLTEMDKSPDRLSQIAGASGE 298 (460) T ss_pred cccCccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCHHHHHHHHHHHHHHhcCccccCCceecCCC Confidence 456899999999988888888888888899888888888888888899999998888887632 246788888 Q ss_pred ceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 270 MAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNE-VRHDLLASDARQLAATLSRDLLW 348 (526) Q Consensus 270 ~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~-v~~~~~~ad~~~i~~~ln~~li~ 348 (526) ++++-++.+. .-..|.+..++..++|++++..+.--.+..++++.+++..+.+.. ....-+...++.|+..||+.|++ T Consensus 299 ~~~~~l~~~~-~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~kl~~ 377 (460) T protein:vir:10 299 IAFTKISLNT-DELKPFDYLKYDQKAICNALGWSDKLLNNNEGGGLNTGNLEEERKRVVTDNIQPDLVILKQAFDKKFIK 377 (460) T ss_pred ceEEEccCCh-hHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC Confidence 8877665432 223477788899999999986654433333333334554444433 34557888899999999998876 Q ss_pred HHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCC-c-cchhcccCCCcccccc Q lcl|Aclame:pro 349 PLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPA-K-NEPVLRSAAQPAILSR 426 (526) Q Consensus 349 ~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~-~-~e~~~~~~~~~~~~~~ 426 (526) ..-. + ...+|+|+...-..+....+....+++.|+ ++.+++|+.+|+|+-. + ++....+... .+... T Consensus 378 ~~~~-~--------~~~~i~~d~~~l~~l~~d~~~~~~~~~~g~-~T~NE~R~~~g~~pi~~~~gD~~~~~~n~-~~~~~ 446 (460) T protein:vir:10 378 RFKG-Y--------ENAVIEWDISELPEMQTDMVAMASWLNTIP-VTPNEIRIAMKYETLNQDGMDIVFMPSNK-VRIDD 446 (460) T ss_pred cccc-c--------CCceEEeecchhhhHHHHHHHHHHHHhCCC-CCHHHHHHHhCCCCCCCCCCCeeeecccc-cchhh Confidence 4321 1 112456654443223333333445667887 9999999999999752 2 3433332211 11111 Q ss_pred cccccccccccccccccccccc Q lcl|Aclame:pro 427 QHGQRVAALATIVGPRYGDQQA 448 (526) Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~ 448 (526) ..... ......++. T Consensus 447 ~~~~~--------~~~~~nq~~ 460 (460) T protein:vir:10 447 VSNNL--------IDSAFNQNQ 460 (460) T ss_pred ccccc--------CCCcccCCC Confidence 00000 000000000 No 44 >protein:vir:1431 Length: 419 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536360;genbank:gi:17975165;genbank:GeneID:929165 Probab=99.86 E-value=7.4e-21 Score=130.95 Aligned_cols=401 Identities=9% Similarity=-0.034 Sum_probs=233.8 Q ss_pred CCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHH-HHHHhccHHHHHHHHHHHHHH Q lcl|Aclame:pro 7 VYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELF-MDMEERDAHLFAEMSKRKRAI 85 (526) Q Consensus 7 ~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~-~~m~~~D~~v~s~l~~Rk~av 85 (526) -+.+....+...+.. +++..|...+-....... ...+- +..+ +-+.|.+|+..+-..| T Consensus 1 ~~~~r~~~~~~~~~~------------------~~~~~~~~~~~g~~~s~~--~~~vt~~~al-~~~~v~~~v~~ia~~i 59 (419) T protein:vir:14 1 MFFSRQLLSNLGQTQ------------------MSAGGWVSALLGSSRSDS--GQVVTPASAL-ALTVLQNCVTLLAESI 59 (419) T ss_pred Ccccccccccccccc------------------cCcchhhHHhhcCCCccC--CcccchHHhh-ccHHHHHHHHHHHHhh Confidence 111111111111000 011111111110000000 00000 0112 5678999999999999 Q ss_pred hcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCce Q lcl|Aclame:pro 86 LGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQSW 160 (526) Q Consensus 86 ~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~ 160 (526) .+++|.|.-..++... .....-+...|+..| ...++++.+. +.+.+|.+++++++...| .|..|.+.++.+ T Consensus 60 A~lp~~~~~~~~~~~~-~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G---~~~~l~pl~~~~ 135 (419) T protein:vir:14 60 AQLPIELYERSGEDRK-PATDHPLYSILKYEPNSWQTPFEYQEQSQVAVGLRGNSYSFIDRDSDG---VIQGLYPLDNEA 135 (419) T ss_pred ccCceEEEEecCCccc-cccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCC---cEEEEEEecCce Confidence 9999998654432211 111112333343323 2456666644 578899999999875543 367899999999 Q ss_pred eEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecC Q lcl|Aclame:pro 161 FQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYP 240 (526) Q Consensus 161 f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~ 240 (526) +.+..+....+.++.....+ ++. ..|+|......+..+|.|.+..+....-.-....++...+...-+.|--+.+++ T Consensus 136 v~v~~~~~~~~~y~~~~~~~--~~~-~~i~h~~~~~~dg~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~ 212 (419) T protein:vir:14 136 VTVMRGSDLKPVYRVRGSDP--MPQ-RLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERP 212 (419) T ss_pred EEEEECCCceEEEEEccCcc--cch-hheeEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEec Confidence 88776666666666544433 344 445555444456689999999999888888888888899999999998888887 Q ss_pred CCC----CHHHHHHHHHHHHHhhc-----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhccccc Q lcl|Aclame:pro 241 PGT----ADEEKATLLRAVTGLGH-----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQ 311 (526) Q Consensus 241 ~~~----~~~e~~~l~~al~~~~~-----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~ 311 (526) ... ++++++++.+.+.+... ...++++.|++++-+..+. .-..|.+..++..++|++++..+.--.+.. T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~-~d~q~~e~~~~~~~~Ia~~fgVpp~~lg~~- 290 (419) T protein:vir:14 213 KDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMTFRPLSMTN-VDAALIDALRLSALDIARIYKIPAHMVNEL- 290 (419) T ss_pred CCCCcccCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCCh-hhHHHHHHHHHHHHHHHHHhCCCHHHhcCC- Confidence 544 46677777777766532 2368889998877665432 223467778899999999987765444322 Q ss_pred ccchhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEec--CccccCHHHHHHHHHHHH Q lcl|Aclame:pro 312 SGGGAFALGQVHNEV-RHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFD--LREQADITSMAQSIPALV 388 (526) Q Consensus 312 ~~~gS~a~~~vh~~v-~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~--~~e~edl~~~a~~~~~l~ 388 (526) ..++++..+.+... ...-+.-.++.|+..||+.|+.+--. ... +++|+ .....|.+.+++.+.+++ T Consensus 291 -~~~t~s~~E~~~~~f~~~~L~P~~~~ie~~l~~kll~~~~~--------~~~--~i~fd~~~l~r~d~~~~~~~~~~~~ 359 (419) T protein:vir:14 291 -ERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSER--------KQY--FIEYNLAGLLRGDQSSRYAAYAVGR 359 (419) T ss_pred -CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccc--------CCe--EEEEechhhhccCHHHHHHHHHHHH Confidence 23455544444333 35577788888998888876532211 111 34554 334578999999999999 Q ss_pred hCCCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccccccchHHHHH Q lcl|Aclame:pro 389 NVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALA 454 (526) Q Consensus 389 ~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (526) +.|+ ++.+++|+.+|+|+-+.++....+....... .......... .+...........|. T Consensus 360 ~~G~-~T~NE~R~~~gl~p~~gGD~~~~~~n~~~~~-~~~~~~~~~~----~~~~~~~~e~~~~l~ 419 (419) T protein:vir:14 360 QWGW-LSINDIRRLENMPPVKGGDIYLSPMNMVDAS-KPQQLPVGKS----EPTKAAIDEIGRILS 419 (419) T ss_pred hCCC-cCHHHHHHHhCCCCCCCcCeeeecccccccc-ccccccCCCC----CCccccccchhcccC Confidence 9998 9999999999999877777655432211111 0000000000 000011111111111 No 45 >protein:vir:1326 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi:9631143;uniprot:Q9ZXB2;genbank:GeneID:2715872 Probab=99.86 E-value=5.3e-21 Score=131.76 Aligned_cols=427 Identities=11% Similarity=0.020 Sum_probs=236.1 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+-+-.-.|+ .+...+....... +.. +++. +.........|. .+......+-+.|.+|+.. T Consensus 1 Mg~~~~l~~r-~~~~~~~~~~~~~-------~~~-----~~~~-~~~~~~~~~~g~-----~V~~~~al~~~~V~~~v~~ 61 (457) T protein:vir:13 1 MGFWSALFGR-GHSPALDGIEARA-------WEP-----YDPS-IYNLGAVAASGE-----TVTPHDALQVSAVFASVRL 61 (457) T ss_pred Cchhhhhhcc-ccccccccccccc-------ccc-----cchH-HHhhcccccCCc-----eechHHhhccHHHHHHHHH Confidence 8843333343 2111111111110 000 0000 000000000111 1111111256789999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc---CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeee Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE---GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHR 156 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~---~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r 156 (526) +-..|.++++.|.-..+..... .....+...++.-+ ...++++.++ +.+.+|.++++|++. +| .|..|.+. T Consensus 62 Ia~~iA~lp~~~~~~~~~~~~~-~~~~~l~~~ln~~~n~~t~~~f~~~~~~~lll~Gna~~~i~~~--~g--~~~~l~~l 136 (457) T protein:vir:13 62 LSETIATLPLSTYSKRGGSRKE-IVTPEWLDYPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWQ--GP--NIVGLDVL 136 (457) T ss_pred HHHhhccCceEEEEecCCcccc-cccchHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEec--CC--cEEEEEEE Confidence 9999999999997644332211 12223333443311 2446666665 578899999999764 44 35578888 Q ss_pred cCceeEecccC--Cc---eE-Eec--cCCCCc--eeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 157 PQSWFQLNPED--QN---EL-RLR--DNSPAG--EALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEM 226 (526) Q Consensus 157 ~~~~f~~~~~~--~~---~l-~~~--~~~~~g--~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f 226 (526) ++.++...... .. .. .+. .++... ..+++...|+.++....+..+|.|.+..+....-.-....++...| T Consensus 137 ~p~~v~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~diih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~ 216 (457) T protein:vir:13 137 DPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGSKF 216 (457) T ss_pred ccCceEEEEecCCCccceeEEEEEEecCCceeeEEeeCccceEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHH Confidence 88766553321 11 11 111 111111 2366777766666655566899999999999998888999999999 Q ss_pred HHHcCCceEEEecCCCCCHHHHHHHHHHHHHhhc-----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 227 LEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGH-----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVL 301 (526) Q Consensus 227 ~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~-----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~il 301 (526) ....+.|--|.+++...++++++++.+.+.+..+ ...+|++.|++++-+..+. .-..|.+..++...+|++++. T Consensus 217 f~ng~~p~gil~~~~~ls~e~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~-~d~q~~e~~~~~~~~Ia~~fg 295 (457) T protein:vir:13 217 FANGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSP-DEAQFLQTRQFQVPEIARIFG 295 (457) T ss_pred HhcCCCcceEEEcCCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCCh-hHHHHHHHHHHHHHHHHHHhC Confidence 9999999999999998999999999888887633 3468899999888776432 223467777889999999987 Q ss_pred chhhhcccccccchhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHH Q lcl|Aclame:pro 302 GGTLTSTTSQSGGGAFA-LGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSM 380 (526) Q Consensus 302 Gqtltt~~~~~~~gS~a-~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~ 380 (526) .+..-.+..++++.+++ ..+........-+.-.++.|+..||+.|+...-. ...+-+|.++.....|.+.+ T Consensus 296 VPp~~lg~~~~~~~~~sn~eq~~~~f~~~tl~P~~~~ie~~ln~~L~~~~~~--------~~~~i~fd~~~l~~~D~~~r 367 (457) T protein:vir:13 296 VPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETAD--------RFRFVKFNLDEIKRGAPKER 367 (457) T ss_pred CCHHHcCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc--------CceeEEeechhhhccCHHHH Confidence 66533322222111111 2223333345567788888888888877654211 11223344444456799999 Q ss_pred HHHHHHHHhCCCcCCHHHHHHHhCCCCCCcc--chhcccCCC--------cccccccccccccccccccccccccccchH Q lcl|Aclame:pro 381 AQSIPALVNVGLEIPSAWVYDKLGIPQPAKN--EPVLRSAAQ--------PAILSRQHGQRVAALATIVGPRYGDQQALD 450 (526) Q Consensus 381 a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~--e~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (526) ++.+.++++.|+ ++.+++|+.+|+|+-+++ +....+... +.....+....................+.+ T Consensus 368 ~~~~~~~~~~G~-~T~NE~R~~~gl~Pi~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 446 (457) T protein:vir:13 368 MELWSLGLQNGI-YSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEVGEEPEPEPAPAPPAIEPPAEEPDEEPEPEGKPDDE 446 (457) T ss_pred HHHHHHHHhCCC-cCHHHHHHHhCCCCCCCCcccceeeccccccccccccccccCCCCCCCCCccccCCCCCCCCCCccc Confidence 999999999997 999999999999876654 433322110 000000000000000000000000000000 Q ss_pred HHHHHHHHHHHH Q lcl|Aclame:pro 451 KALADLPAKDMQ 462 (526) Q Consensus 451 ~~~~~~~~~~~~ 462 (526) +. .....++.+ T Consensus 447 ~~-~~~~~~~~~ 457 (457) T protein:vir:13 447 GA-TEEDDEDDA 457 (457) T ss_pred cC-CCCcccccC Confidence 00 000000000 No 46 >protein:vir:94666 Length: 723 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579205;genbank:gi:93007441;genbank:GeneID:5076785 Probab=99.85 E-value=5.2e-20 Score=126.31 Aligned_cols=459 Identities=12% Similarity=0.010 Sum_probs=235.1 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+.|=...|-. ..|......+++ . +. ..+-+.|.+|+.. T Consensus 1 ~~~~~~~~g~~------------------~~~~~~~~~~~~-----------------~--~~----~~~~~~V~acV~~ 39 (723) T protein:vir:94 1 MTTFPSGAGGW------------------NAWSADSVFGNG-----------------A--KG----WSNSAVAYRCISM 39 (723) T ss_pred CcccccCCCcc------------------cccccccccccc-----------------H--HH----HhhhHHHHHHHHH Confidence 22211111110 001000000011 0 11 1257899999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeee Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHH 155 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~ 155 (526) +-..|.+++|.+...+.....+ .-+...|+..| ...++...++ +.+.+|.+++++++.-.+..-.|..+.+ T Consensus 40 Ia~~iA~lpl~l~~~~~~~~~~----~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~r~~~g~p~~l~~ 115 (723) T protein:vir:94 40 LANNAASVDLVVRGPDGELDEL----HPLSQLWNVMPNRAMPAQVLKALSMTRLQLDGQCHLWLNYNGRTPAGVPDEIWY 115 (723) T ss_pred HHHhhccceeEEEcCCCccchh----hHHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCccccceeEEEE Confidence 9999999999997543322211 22334454333 2445666655 6888999999998753322335677888 Q ss_pred ecCceeEecccCCc-------eEEeccCCCCc--eeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 156 RPQSWFQLNPEDQN-------ELRLRDNSPAG--EALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEM 226 (526) Q Consensus 156 r~~~~f~~~~~~~~-------~l~~~~~~~~g--~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f 226 (526) .+++...+...... .+.+.....+| .+++....|+.++....+..+|.|.+..+....-.-....++...| T Consensus 116 l~~~~~~v~~~~~~~~~~~~~~~~y~~~~~~G~~~~~~~~dIiHir~~~~~dg~~G~Spi~~a~~~i~~~~aa~~~~~~~ 195 (723) T protein:vir:94 116 VYDRVTTIVATRAADAVPQAQIIGYVIERTDGVRVPVLADEMLWLRFSDPYDPLAVMAPWKAARAAVDADFYAATWQRQS 195 (723) T ss_pred ecCcceEEeecCCCccceeeeeeEEEEEecCceeEEecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHH Confidence 87765544322211 11111112223 4567777666665555667799999999998888888888888899 Q ss_pred HHHcCCceEEEecCCCCCHHHHHHHHHHHHHhhc---C--eEEEec----------CCceEEEeecCCCChHHHHHHHHH Q lcl|Aclame:pro 227 LEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGH---A--AAGIIP----------ETMAIDFQQAAQGSSEPFLAMMRQ 291 (526) Q Consensus 227 ~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~---~--~~~iip----------~~~~ie~~~a~~~~~~~~~~li~~ 291 (526) ...-+.|--|.+++ +.++++++++.+.+...-+ + -.+|++ +|++++-++.+. .-..|.+..++ T Consensus 196 f~NG~~p~giL~~~-~l~~e~~~~~~~~~~~~~~G~~Nagk~~vL~g~~~~~~vl~~G~~~~~l~~s~-~D~q~le~r~~ 273 (723) T protein:vir:94 196 FKNGARPGGVVNLG-DMDEQTFTKTVAAFRSQVEGVQNAGRHLLIAGQGSDGGAAGKGATFTSLSMSP-AEMDYINSRMH 273 (723) T ss_pred HhcCCCcceEEEcC-CCCHHHHHHHHHHHHHHhhchhhcCcceeecccccccccccCCceEEEccCCH-HHHHHHHHHHH Confidence 98888898888886 5788888888887766422 2 234443 566665554321 12247777888 Q ss_pred HHHHHHHHHhchhhhcccccccchhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEec Q lcl|Aclame:pro 292 SEDAISKAVLGGTLTSTTSQSGGGAFALGQVHN-EVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFD 370 (526) Q Consensus 292 ~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~-~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~ 370 (526) ..++|++++..+.--.. ++++++..+... .....-+...++.|+..||+.|++.. ++ .-+|.|+ T Consensus 274 ~~~eIa~afgVPp~~i~----~~st~sN~e~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~---g~--------~~~~~f~ 338 (723) T protein:vir:94 274 SAEEVMLAFGIRKDALL----GGSTYENQAEAKAAVWTETLIPQMEVMASITDLQLLPDI---GW--------TVEWDFN 338 (723) T ss_pred hHHHHHHHhCCChhHcC----CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccc---cC--------ceEEeec Confidence 89999999877742221 122332222222 23466778899999999999887532 11 1245565 Q ss_pred Ccc--ccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCccchh--cccC-----CCcccccccccccc--------- Q lcl|Aclame:pro 371 LRE--QADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPV--LRSA-----AQPAILSRQHGQRV--------- 432 (526) Q Consensus 371 ~~e--~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~--~~~~-----~~~~~~~~~~~~~~--------- 432 (526) ... ..|.+.+++.+.++++.|+ ++.+++|+.+|+|+-+.++.. +.+. +.+++.++...... T Consensus 339 ~~~lLr~D~~~r~~~~~~~v~~G~-~T~NE~R~~lglpPi~gGd~~~~~~p~~~~~a~~~~~~p~~~e~~~~~~~~~~~~ 417 (723) T protein:vir:94 339 SVPALQEDLEAQAGRNQGYLVNDV-LMVDEVRATIGLDPLPGGIGQMTLTPYRAQFAPAPAPAPAVEEGAARMLALLERV 417 (723) T ss_pred chhhhhcCHHHHHHHHHHHHhCCC-cCHHHHHHHhCCCCCCCCcccceeccccccccCCCCCCccchhhhHhhhhhcccc Confidence 433 4799999999999999998 999999999999876655422 1110 01111111000000 Q ss_pred c---ccccccccc-----cccccchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcC------------CHHHHHHH Q lcl|Aclame:pro 433 A---ALATIVGPR-----YGDQQALDKALADLPAKDMQNQANDLLAPLL----EAVNRGD------------SETELLGA 488 (526) Q Consensus 433 ~---~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~a~------------s~ee~~~~ 488 (526) + .....+... .+.....++.+... .+..+.+++..+. .+..++- .+.++++. T Consensus 418 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (723) T protein:vir:94 418 AADRPLPELPVRATTVLHHDPGPDPQQTLYER----LEALLQPLLVELGRRQAAVTLREFDLLMRGERAAALWLADVRAV 493 (723) T ss_pred ccccCcCCCCCCCCCCCCCCcccCCchhHHHH----HHHHHhhhHHHHHHHHHHHHHHhhchhhcchHHHHHHHHHHHHH Confidence 0 000000000 00111112222222 2222222222211 1111110 11233333 Q ss_pred HHHHhhc-----------CCHHHHHHHHH---HHHHHHHHHhHHhhhhhccC Q lcl|Aclame:pro 489 LAEAFPD-----------MDDSALTDALH---RLLFAADTWGRLHGNLDRID 526 (526) Q Consensus 489 L~~l~~~-----------l~~~~l~~~l~---~a~~~A~l~G~~~~~~e~~d 526 (526) ..+.|.. ..+..+.++-. .....-.+.+-.+++....+ T Consensus 494 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (723) T protein:vir:94 494 ASEAYERGALLAPPDAEEVPPARLTRLDLAPEELAVRINVKRIFNARKWVAR 545 (723) T ss_pred HHhccccceeccccccchhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH Confidence 3332211 11111111000 00000111111111111111 No 47 >protein:vir:98396 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918929;genbank:gi:119443691;genbank:GeneID:4594558 Probab=99.85 E-value=1.9e-20 Score=128.75 Aligned_cols=416 Identities=10% Similarity=-0.010 Sum_probs=236.4 Q ss_pred cCCCCc----cCccccchhhhhh-hhhhhh--hhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHH Q lcl|Aclame:pro 6 DVYGNP----IRTQQLREPQTSR-LAGLAK--EFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEM 78 (526) Q Consensus 6 ~~~g~p----~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l 78 (526) =+|=+| ++++.-+++++.- +-++-+ .-+......-+...+...+-.....+... +...-..+-+.|.+|+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~e~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~al~~~~V~acv 77 (441) T protein:vir:98 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQ---YKDIEAIRHSDIFTAV 77 (441) T ss_pred CceecCccceeccccccchhhhhhccccccccccccccCCCcchHHHHHHhhcccccCccc---cchhhhhccHHHHHHH Confidence 223333 4444444443321 011100 00100111122233333332222111111 1111123678899999 Q ss_pred HHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcC----HHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeee Q lcl|Aclame:pro 79 SKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEG----LEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAF 153 (526) Q Consensus 79 ~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~----~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l 153 (526) ..+-..|.++++.+...+... ...-+...|+..|+ ..++++.+. +.+.+|.++++++++.+| .|..| T Consensus 78 ~~Ia~~iA~lpl~~~~~~~~~-----~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G---~~~~L 149 (441) T protein:vir:98 78 MMIASDLARMPIRVTVNGQIN-----YSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTG---EPMNL 149 (441) T ss_pred HHHHHhhccCceEEecCCccc-----ccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCC---cEEEE Confidence 999999999999997533211 11223333443332 335555544 578899999999886543 46789 Q ss_pred eeecCceeEecccCCceEEeccCC----CC--ceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 154 HHRPQSWFQLNPEDQNELRLRDNS----PA--GEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEML 227 (526) Q Consensus 154 ~~r~~~~f~~~~~~~~~l~~~~~~----~~--g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~ 227 (526) .+.++.++++..+..+.+.+.... .. ...+++...|+.++.. .+..+|.|.+..+....-.-....++...|. T Consensus 150 ~~i~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~dviHir~~~-~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f 228 (441) T protein:vir:98 150 TFRKTSEIELKLDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFL 228 (441) T ss_pred EEEcCceeEEEECCCCcEEEEEEEeccCcceeeEEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHH Confidence 999999887766555544443221 11 1347777777666544 3457899999999988888888888999999 Q ss_pred HHcCCceEEEecCCCCC-HHHHHHHHHHHHHhhc-----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 228 EIYGLPIRLGKYPPGTA-DEEKATLLRAVTGLGH-----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVL 301 (526) Q Consensus 228 E~~G~P~~vgk~~~~~~-~~e~~~l~~al~~~~~-----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~il 301 (526) +.-+.|--|.+++...+ +++++++.+.+.+.-+ ...+|++.|++++-++.+. .-..|.+..++..++|++++. T Consensus 229 ~ng~~~~gil~~~~~~~~~e~~~~~~~~~~~~~~G~~nag~~~vl~~g~~~~~l~~~~-~d~q~~e~r~~~~~~Ia~~fg 307 (441) T protein:vir:98 229 RNGTHAGGILKMKGVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDT-EVLKLIRENKSSTREIAGVFG 307 (441) T ss_pred hccCCCcEEEEeCCCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCCh-hHHHHHHHHHHhHHHHHHHhC Confidence 99999999999987754 5667777776665422 2468899999887775332 222477788889999999987 Q ss_pred chhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHH Q lcl|Aclame:pro 302 GGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMA 381 (526) Q Consensus 302 Gqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a 381 (526) .+.--.+.. +.+.|.... +..+..-+...++.|+..||+.|.+.. ...+-+|..+.....|.+.++ T Consensus 308 VPp~~lg~~-~~~~s~~q~---~~~y~~tl~P~~~~ie~~ln~~L~~~~----------~~~~~~fd~~~llr~d~~~~~ 373 (441) T protein:vir:98 308 IPLHKFGIE-TANMSITDA---NLDYLSTLKPYITCVCAELNFKFNDEY----------VNREFKFDTTEIRVVDEKTQA 373 (441) T ss_pred CCHHHcCCC-CCCccHHHH---HHHHHHHHHHHHHHHHHHHHhhccccc----------cCceEEEechhhhccCHHHHH Confidence 664433321 111121221 112334677788888888887764321 112223333344567899999 Q ss_pred HHHHHHHhCCCcCCHHHHHHHhCCCCCCccch-hcccCCCcccccccccccccccccccccccccccchH Q lcl|Aclame:pro 382 QSIPALVNVGLEIPSAWVYDKLGIPQPAKNEP-VLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALD 450 (526) Q Consensus 382 ~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (526) +.++++++.|+ ++.+++|+.+|+|+-+.++. +........+.......+........... ...+.-+ T Consensus 374 ~~~~~~~~~G~-~T~NE~R~~~gl~pi~gGd~~~~~~~~n~~~~~~~~~~q~~~~~~~~~~~-kgGe~ne 441 (441) T protein:vir:98 374 EIDKINIDSGK-MNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELVDEYQMNKSRATDKKL-KGGEENE 441 (441) T ss_pred HHHHHHHhCCC-cCHHHHHHHhCCCCCCCCCcceEeeccccccccccccccccccccccccc-CCCCCCC Confidence 99999999997 99999999999997665553 32222111111111111111000000000 0000001 No 48 >protein:vir:80333 Length: 419 # NCBI annotation: gp4, phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111083;genbank:gi:134288632;genbank:GeneID:4960580 Probab=99.85 E-value=1.1e-20 Score=129.91 Aligned_cols=401 Identities=10% Similarity=-0.054 Sum_probs=234.6 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhh---hcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHP---AKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAE 77 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~ 77 (526) |-- .++ ..+.+.+.....-..+...+...+ ...+|+. ..+ +-+.|.+| T Consensus 1 m~~-----~~~-~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~v~~~----------------------~al-~~~~v~~c 51 (419) T protein:vir:80 1 MFF-----SRQ-LLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPA----------------------SAL-SLTVLQNC 51 (419) T ss_pred CCc-----ccc-cccccCcCCCCcchhhHHhhcccccccCcccChH----------------------Hhh-ccHHHHHH Confidence 331 011 111111111100001111110000 0001111 112 46789999 Q ss_pred HHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEee Q lcl|Aclame:pro 78 MSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLA 152 (526) Q Consensus 78 l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~ 152 (526) +..+-..|.++++.+.-..++... +....-+...|+..| ...++++.+. +.+.+|.++++++++..| .|.. T Consensus 52 v~~ia~~ia~lp~~~~~~~~~~~~-~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G---~~~~ 127 (419) T protein:vir:80 52 VTLLAESIAQLPVELYERSGDDRK-PATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDG---VIQG 127 (419) T ss_pred HHHHHHhhccCceEEEEecCCCcc-cccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCC---cEEE Confidence 999999999999998643322211 100111233343322 2456666666 578899999999876543 3678 Q ss_pred eeeecCceeEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCC Q lcl|Aclame:pro 153 FHHRPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGL 232 (526) Q Consensus 153 l~~r~~~~f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~ 232 (526) |.+.++.++++..+....+.++..+.. .++... |+|......+.++|.|.+..+....-.-....++...|...-|. T Consensus 128 L~~i~~~~v~i~~~~~~~~~y~~~~~~--~~~~~~-i~h~~~~~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~ 204 (419) T protein:vir:80 128 LYPLDNEAVTVMKGPDLKPMYRVAGAD--PLPQRL-VHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTA 204 (419) T ss_pred EEEecCceEEEEECCCceEEEEEcCcc--ccchhh-eEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCC Confidence 999999988887766666666654433 345544 55554444556899999999998888888888888999999999 Q ss_pred ceEEEecCCCC----CHHHHHHHHHHHHHhhc-----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhch Q lcl|Aclame:pro 233 PIRLGKYPPGT----ADEEKATLLRAVTGLGH-----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGG 303 (526) Q Consensus 233 P~~vgk~~~~~----~~~e~~~l~~al~~~~~-----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGq 303 (526) |--+.+++... +++..+++.+.+.+.-+ ...++++.|++++-++.+. .-..|.+..++..++|++++..+ T Consensus 205 ~~gil~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~s~-~d~q~~e~~~~~~~~Ia~~fgVP 283 (419) T protein:vir:80 205 LSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTN-VDAALIDALRLSALDIARIYKIP 283 (419) T ss_pred ccEEEEecCCCCcccCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEeccCCh-hhHHHHHHHHHHHHHHHHHhCCC Confidence 98888876432 46666777777765532 3478889998877665332 22357778889999999998776 Q ss_pred hhhcccccccchhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHH Q lcl|Aclame:pro 304 TLTSTTSQSGGGAFALGQVHNEV-RHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQ 382 (526) Q Consensus 304 tltt~~~~~~~gS~a~~~vh~~v-~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~ 382 (526) .--.+. +..++++..+.+... ...-+.-.++.|+..||+.|+.+--.. ..+.+|.++.....|.+++++ T Consensus 284 p~llg~--~~~~t~~n~e~~~~~f~~~~l~P~~~~ie~~l~~kll~~~~~~--------~~~i~fd~~~l~~~d~~~~~~ 353 (419) T protein:vir:80 284 AHMVNE--LERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERK--------QYFIEYNLAGLLRGDQSSRYA 353 (419) T ss_pred HHHhcC--CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccC--------CeEEEEechhhhccCHHHHHH Confidence 544332 233455544444333 456688889999999998776432111 112334333444568999999 Q ss_pred HHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccccccchHHHHHHHHHHHHH Q lcl|Aclame:pro 383 SIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALADLPAKDMQ 462 (526) Q Consensus 383 ~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (526) .+.++++.|+ ++.+++|+.+|+|+-+.++....+.... ..........+ ...+....+ + T Consensus 354 ~~~~~~~~G~-~T~NE~R~~~g~~p~~gGD~~~~~~n~~-~~~~~~~~~~~-------~~~~~~~~~-~----------- 412 (419) T protein:vir:80 354 AYAVGRQWGW-LSINDIRRLENMPPVKGGDIYLSPMNMV-DASKPQPIPMG-------KTEPTKAAL-D----------- 412 (419) T ss_pred HHHHHHhCCC-cCHHHHHHHhCCCCCCCcceeeeccccc-cccccccccCC-------CCCchhhhH-H----------- Confidence 9999999998 9999999999999877777655432211 11000000000 000000011 0 Q ss_pred HHHHHHHHHHHHHHH Q lcl|Aclame:pro 463 NQANDLLAPLLEAVN 477 (526) Q Consensus 463 ~~~~~~~~~i~~~~~ 477 (526) .+.++|. T Consensus 413 --------~~~~~l~ 419 (419) T protein:vir:80 413 --------EIGRILS 419 (419) T ss_pred --------HHHhhcC Confidence 1111111 No 49 >protein:vir:96980 Length: 409 # NCBI annotation: ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Probab=99.85 E-value=3.3e-20 Score=127.39 Aligned_cols=399 Identities=13% Similarity=0.073 Sum_probs=228.7 Q ss_pred CCeeecC-CCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDV-YGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMS 79 (526) Q Consensus 1 m~~~~~~-~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~ 79 (526) |.+ +. .+| ++.+-+.+-......+.. .|..|..+ + +..+..+...+-+.|.+|+. T Consensus 1 ~~~--~~~~~~-~k~~~~~~~~~~~~~~~~-~~~~~~~~-----------------~---~~~v~~~~a~~~~~V~~ci~ 56 (409) T protein:vir:96 1 MAK--ENIVTR-IKKKLIDNWIDQSASKLY-DFSPWKNK-----------------S---FWGVINNTLETNETIFSAIT 56 (409) T ss_pred Ccc--ccchhh-hhhHHhhhhhcccccccc-ccccccCc-----------------c---ccccchhhHhhhHHHHHHHH Confidence 554 22 122 222212111111111111 01111000 0 00011111225678999999 Q ss_pred HHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecC Q lcl|Aclame:pro 80 KRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQ 158 (526) Q Consensus 80 ~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~ 158 (526) .+-..|.+++|.+.-..+ ..+....+.+..-=+..-...++++.++ +.+.+|.++++++++..| .+..|.+.++ T Consensus 57 ~ia~~ia~lp~~~~~~~~--~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G---~~~~L~~l~~ 131 (409) T protein:vir:96 57 KLSNSMASLPLKMYEDYK--VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYH---QPSKLFLLNP 131 (409) T ss_pred HHHHhhhhCceEEeeccc--ccchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCC---cEEEEEEEcC Confidence 999999999999875332 2222333333321111112445555555 578899999999876544 3668999999 Q ss_pred ceeEecccCC-ceEEeccCC--CCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceE Q lcl|Aclame:pro 159 SWFQLNPEDQ-NELRLRDNS--PAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIR 235 (526) Q Consensus 159 ~~f~~~~~~~-~~l~~~~~~--~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~ 235 (526) .++.+..++. ..+.++... +....+++...+++++....+..+|.|.+..+....-...... .+. |..-...|.. T Consensus 132 ~~v~v~~~~~~~~~~y~~~~~~g~~~~~~~~evih~r~~~~~~~~~G~s~l~~~~~~i~~~~~~~-~~~-~~~~~~~~~~ 209 (409) T protein:vir:96 132 DVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVR-TFN-LTEMQKPDSF 209 (409) T ss_pred ceeEEEEeCCCcEEEEEEEcCCceEEEEccccEEEeCCCCCCCccccccHHHHHHHHHHHHHHHH-HHH-HHhcCCCcee Confidence 8887754432 333333322 3334577777666665555667789999888765544433333 332 2222234456 Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhcC--eEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhccccccc Q lcl|Aclame:pro 236 LGKYPPGTADEEKATLLRAVTGLGHA--AAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSG 313 (526) Q Consensus 236 vgk~~~~~~~~e~~~l~~al~~~~~~--~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~ 313 (526) +.+++...++++++++.+.+.+..++ ..++++.|++++-+..+ .....|.+..++..++|++++..+..-.+. .. T Consensus 210 i~~~~~~l~~e~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~-~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~--~~ 286 (409) T protein:vir:96 210 MLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKK-YVSEDIVASENLTRERVANVFQLPSIFLNA--RS 286 (409) T ss_pred EEecCCCCCHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCC-hhHHHHHHHHHHHHHHHHHHhCCCHHHhCC--CC Confidence 77788888999999988888776544 46788899888777543 223357778888899999998776544432 22 Q ss_pred chhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecC--ccccCHHHHHHHHHHHHhC Q lcl|Aclame:pro 314 GGAFALGQVHNEV-RHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDL--REQADITSMAQSIPALVNV 390 (526) Q Consensus 314 ~gS~a~~~vh~~v-~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~--~e~edl~~~a~~~~~l~~~ 390 (526) .++++..+-+... ...-+.-.++.|+..||+.|++..-. ... -+|+|+. ....|.+.+++++.++++. T Consensus 287 ~~~~s~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~-------~~g--~~i~fd~~~ll~~d~~~~~e~~~~~~~~ 357 (409) T protein:vir:96 287 NTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDR-------EKN--RYFKFNVKSYLRADSATQAEVYFKAVRS 357 (409) T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc-------cCc--ceEEeechhhhccCHHHHHHHHHHHHhC Confidence 3455555544433 45568888899999999887753210 011 2355543 3456899999999999999 Q ss_pred CCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccc Q lcl|Aclame:pro 391 GLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYG 444 (526) Q Consensus 391 G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (526) |+ ++.+++|+.+|+|+-+.++....+....+ .............+....... T Consensus 358 G~-~T~NE~R~~~g~~pi~ggD~~~~~~n~~~-~~~~~~~~~~~~gG~~n~~e~ 409 (409) T protein:vir:96 358 GY-YTINDIREWEDLPPVEGGDKPLISGDLYP-IDTPLELRKSLKGGDKNVNES 409 (409) T ss_pred CC-CCHHHHHHHhCCCCCCCcceeeecccccc-cccchhhcccccCCCCCcCCC Confidence 97 99999999999998776766554322211 111111111111110000000 No 50 >protein:vir:9408 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803386;genbank:gi:29028698;genbank:GeneID:1258164 Probab=99.85 E-value=1.9e-20 Score=128.71 Aligned_cols=416 Identities=10% Similarity=-0.008 Sum_probs=236.5 Q ss_pred cCCCCc----cCccccchhhhhh-hhhhhhh--hhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHH Q lcl|Aclame:pro 6 DVYGNP----IRTQQLREPQTSR-LAGLAKE--FAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEM 78 (526) Q Consensus 6 ~~~g~p----~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l 78 (526) =+|=+| +..+.-+++...- +-++-+. -+.......+...+...+-.....+...+- ..-..+-+.|.+|+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~e~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~al~~~~V~~cv 77 (441) T protein:vir:94 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYK---DIEAIRHSDIFTAV 77 (441) T ss_pred CccccCccccccccccccchhhhhccccccccccccccCCCcchHHHHHHhcccCcccccccc---hhhhhccHHHHHHH Confidence 223333 3333333332211 1111000 000011122223333333222211211111 11112578899999 Q ss_pred HHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcC----HHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeee Q lcl|Aclame:pro 79 SKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEG----LEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAF 153 (526) Q Consensus 79 ~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~----~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l 153 (526) ..+-..|.++++.+...+... ..+-+...|+..|+ ..+++..+. +.+.+|.++++++++..| .|..| T Consensus 78 ~~Ia~~iA~lp~~~~~~~~~~-----~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G---~~~~L 149 (441) T protein:vir:94 78 MMIASDLARMPIRVTVNGQIN-----YSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTG---EPMNL 149 (441) T ss_pred HHHHHhhccCceeeecCcccc-----ccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCC---cEEEE Confidence 999999999999987433211 11223333443332 345565555 578899999999876443 36789 Q ss_pred eeecCceeEecccCCceEEeccC----CCCc--eeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 154 HHRPQSWFQLNPEDQNELRLRDN----SPAG--EALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEML 227 (526) Q Consensus 154 ~~r~~~~f~~~~~~~~~l~~~~~----~~~g--~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~ 227 (526) .+.++..++...+..+.+.+... ...+ ..+++...|+.++.. .+..+|.|.+..+....-.-....++...|. T Consensus 150 ~~i~~~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~dvih~k~~~-~dg~~G~spl~~~~~~i~~~~~~~~~~~~~f 228 (441) T protein:vir:94 150 TFRKTSEIELKSDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFL 228 (441) T ss_pred EEEcCceeEEEECCCccEEEEEEEeccCCceeEEEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHH Confidence 99999988876655555444321 1111 347777776666544 4457999999999988888888888888999 Q ss_pred HHcCCceEEEecCCCCC-HHHHHHHHHHHHHhhc-----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 228 EIYGLPIRLGKYPPGTA-DEEKATLLRAVTGLGH-----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVL 301 (526) Q Consensus 228 E~~G~P~~vgk~~~~~~-~~e~~~l~~al~~~~~-----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~il 301 (526) ...+.|--|.+++...+ ++.++++.+.+.+.-+ ...+|+|.|++++-++.+. .-..|.+..++..++|+.++. T Consensus 229 ~ng~~p~gil~~~~~~~~~e~~e~~r~~~~~~~~G~~nag~~~vl~~G~~~~~l~~~~-~d~q~~e~~~~~~~~Ia~~fg 307 (441) T protein:vir:94 229 RNGTHAGGILKMKGVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDT-EVLKLIRENKSSTREIAGVFG 307 (441) T ss_pred hccCCCcEEEEcCCCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCCh-hHHHHHHHHHHhHHHHHHHhC Confidence 99999999999987654 5656677666655422 2368899999877775332 223477788899999999987 Q ss_pred chhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHH Q lcl|Aclame:pro 302 GGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMA 381 (526) Q Consensus 302 Gqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a 381 (526) .+..-.+.. +.+.|.... +..+..-+...++.|+..||+.|.+.. ...+-+|.++.....|.+.++ T Consensus 308 VPp~~lg~~-~~~~s~~q~---~~~~~~tl~P~~~~ie~eln~kl~~~~----------~~~~~~fd~~~llr~D~~~~~ 373 (441) T protein:vir:94 308 IPLHKFGIE-TANMSITDA---NLDYLSTLKPYITCVCAELNFKFNDEY----------VNREFKFDTTEIRVVDEKTQA 373 (441) T ss_pred CCHHHcCCC-CCCccHHHH---HHHHHHHHHHHHHHHHHHHhhhccccc----------cCceEEeechhhhccCHHHHH Confidence 664333321 111222221 222334677888889888988764321 111223433444567899999 Q ss_pred HHHHHHHhCCCcCCHHHHHHHhCCCCCCccch-hcccCCCcccccccccccccccccccccccccccchH Q lcl|Aclame:pro 382 QSIPALVNVGLEIPSAWVYDKLGIPQPAKNEP-VLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALD 450 (526) Q Consensus 382 ~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (526) +.++++++.|+ ++.+++|+.+|+|+-++++. +........+.......+............ ..+.-+ T Consensus 374 ~~~~~~i~~G~-~T~NE~R~~~gl~Pi~ggd~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~k-gGe~~e 441 (441) T protein:vir:94 374 EIDKINIDSGK-MNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELVDEYQMNKSRATDKKLK-GGEENE 441 (441) T ss_pred HHHHHHHhCCC-cCHHHHHHHhCCCCCCCCCcceEeecccccccccccccccccccccccccC-CCCCCC Confidence 99999999997 99999999999987666653 222111111111111101110000000000 000000 No 51 >protein:vir:79984 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430000;genbank:gi:156604055;genbank:GeneID:5525444 Probab=99.85 E-value=1.9e-20 Score=128.71 Aligned_cols=416 Identities=10% Similarity=-0.008 Sum_probs=236.5 Q ss_pred cCCCCc----cCccccchhhhhh-hhhhhhh--hhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHH Q lcl|Aclame:pro 6 DVYGNP----IRTQQLREPQTSR-LAGLAKE--FAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEM 78 (526) Q Consensus 6 ~~~g~p----~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l 78 (526) =+|=+| +..+.-+++...- +-++-+. -+.......+...+...+-.....+...+- ..-..+-+.|.+|+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~e~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~al~~~~V~~cv 77 (441) T protein:vir:79 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYK---DIEAIRHSDIFTAV 77 (441) T ss_pred CccccCccccccccccccchhhhhccccccccccccccCCCcchHHHHHHhcccCcccccccc---hhhhhccHHHHHHH Confidence 223333 3333333332211 1111000 000011122223333333222211211111 11112578899999 Q ss_pred HHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcC----HHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeee Q lcl|Aclame:pro 79 SKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEG----LEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAF 153 (526) Q Consensus 79 ~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~----~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l 153 (526) ..+-..|.++++.+...+... ..+-+...|+..|+ ..+++..+. +.+.+|.++++++++..| .|..| T Consensus 78 ~~Ia~~iA~lp~~~~~~~~~~-----~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G---~~~~L 149 (441) T protein:vir:79 78 MMIASDLARMPIRVTVNGQIN-----YSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTG---EPMNL 149 (441) T ss_pred HHHHHhhccCceeeecCcccc-----ccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCC---cEEEE Confidence 999999999999987433211 11223333443332 345565555 578899999999876443 36789 Q ss_pred eeecCceeEecccCCceEEeccC----CCCc--eeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 154 HHRPQSWFQLNPEDQNELRLRDN----SPAG--EALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEML 227 (526) Q Consensus 154 ~~r~~~~f~~~~~~~~~l~~~~~----~~~g--~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~ 227 (526) .+.++..++...+..+.+.+... ...+ ..+++...|+.++.. .+..+|.|.+..+....-.-....++...|. T Consensus 150 ~~i~~~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~dvih~k~~~-~dg~~G~spl~~~~~~i~~~~~~~~~~~~~f 228 (441) T protein:vir:79 150 TFRKTSEIELKSDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFL 228 (441) T ss_pred EEEcCceeEEEECCCccEEEEEEEeccCCceeEEEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHH Confidence 99999988876655555444321 1111 347777776666544 4457999999999988888888888888999 Q ss_pred HHcCCceEEEecCCCCC-HHHHHHHHHHHHHhhc-----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 228 EIYGLPIRLGKYPPGTA-DEEKATLLRAVTGLGH-----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVL 301 (526) Q Consensus 228 E~~G~P~~vgk~~~~~~-~~e~~~l~~al~~~~~-----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~il 301 (526) ...+.|--|.+++...+ ++.++++.+.+.+.-+ ...+|+|.|++++-++.+. .-..|.+..++..++|+.++. T Consensus 229 ~ng~~p~gil~~~~~~~~~e~~e~~r~~~~~~~~G~~nag~~~vl~~G~~~~~l~~~~-~d~q~~e~~~~~~~~Ia~~fg 307 (441) T protein:vir:79 229 RNGTHAGGILKMKGVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDT-EVLKLIRENKSSTREIAGVFG 307 (441) T ss_pred hccCCCcEEEEcCCCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCCh-hHHHHHHHHHHhHHHHHHHhC Confidence 99999999999987654 5656677666655422 2368899999877775332 223477788899999999987 Q ss_pred chhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHH Q lcl|Aclame:pro 302 GGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMA 381 (526) Q Consensus 302 Gqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a 381 (526) .+..-.+.. +.+.|.... +..+..-+...++.|+..||+.|.+.. ...+-+|.++.....|.+.++ T Consensus 308 VPp~~lg~~-~~~~s~~q~---~~~~~~tl~P~~~~ie~eln~kl~~~~----------~~~~~~fd~~~llr~D~~~~~ 373 (441) T protein:vir:79 308 IPLHKFGIE-TANMSITDA---NLDYLSTLKPYITCVCAELNFKFNDEY----------VNREFKFDTTEIRVVDEKTQA 373 (441) T ss_pred CCHHHcCCC-CCCccHHHH---HHHHHHHHHHHHHHHHHHHhhhccccc----------cCceEEeechhhhccCHHHHH Confidence 664333321 111222221 222334677888889888988764321 111223433444567899999 Q ss_pred HHHHHHHhCCCcCCHHHHHHHhCCCCCCccch-hcccCCCcccccccccccccccccccccccccccchH Q lcl|Aclame:pro 382 QSIPALVNVGLEIPSAWVYDKLGIPQPAKNEP-VLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALD 450 (526) Q Consensus 382 ~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (526) +.++++++.|+ ++.+++|+.+|+|+-++++. +........+.......+............ ..+.-+ T Consensus 374 ~~~~~~i~~G~-~T~NE~R~~~gl~Pi~ggd~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~k-gGe~~e 441 (441) T protein:vir:79 374 EIDKINIDSGK-MNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELVDEYQMNKSRATDKKLK-GGEENE 441 (441) T ss_pred HHHHHHHhCCC-cCHHHHHHHhCCCCCCCCCcceEeecccccccccccccccccccccccccC-CCCCCC Confidence 99999999997 99999999999987666653 222111111111111101110000000000 000000 No 52 >protein:vir:6240 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Probab=99.85 E-value=3.8e-20 Score=127.06 Aligned_cols=422 Identities=11% Similarity=0.023 Sum_probs=235.2 Q ss_pred CCeeecC-CCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDV-YGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMS 79 (526) Q Consensus 1 m~~~~~~-~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~ 79 (526) |+ +++. .|++-... +...... .|..+ .|. +.........|. .+-.+...+-+.|.+|+. T Consensus 1 Mg-~~~~l~~~~~~~~-~~~~~~~-------~~~~~-----~~~-~~~~~~~~~~g~-----~v~~~~al~~~~v~~~i~ 60 (457) T protein:vir:62 1 MG-FWSALFGRGHSPA-LDAAEGR-------AWEPY-----DPS-IYNLGATASSGE-----RVTPHDALQVSAVFASVR 60 (457) T ss_pred Cc-hhhhhhccccccc-ccccccc-------ccccc-----hhh-hhhccccccCCc-----eechHHhhccHHHHHHHH Confidence 88 4443 34432211 1000000 01000 000 000000000111 111111225688999999 Q ss_pred HHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcC---cCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeee Q lcl|Aclame:pro 80 KRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDL---EGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHH 155 (526) Q Consensus 80 ~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~---~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~ 155 (526) .+-..|.++++.|.-..+....... ...+..+++.- -...++++.+. +.+.+|.+++++.+. +|. +..|.+ T Consensus 61 ~ia~~iA~lp~~~~~~~~~~~~~~~-~~~~~~ll~~pn~~~t~~~f~~~~~~~l~l~Gna~~~i~~~--~g~--~~~l~~ 135 (457) T protein:vir:62 61 LLSETIATLPLSTYSKRGGTRKEID-TPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA--GPN--IAGLDV 135 (457) T ss_pred HHHHhHhhCceEEEEecCCcccccc-chHHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEeC--CCc--EEEEEE Confidence 9999999999998754433222111 11122223221 12556666666 578899999999764 343 457888 Q ss_pred ecCceeEecccC--Cc---eE-Eecc--CCCCc--eeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 156 RPQSWFQLNPED--QN---EL-RLRD--NSPAG--EALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAE 225 (526) Q Consensus 156 r~~~~f~~~~~~--~~---~l-~~~~--~~~~g--~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~ 225 (526) .++.++...... .. .. .+.. ++... ..+++...|++++....+..+|.|.+..+....-.-....++... T Consensus 136 l~p~~v~v~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~eiih~r~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~ 215 (457) T protein:vir:62 136 LDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAH 215 (457) T ss_pred EcCcceEEEEeccCCccceeEEEEEEccCCceeEEEeeCccceEEecCCCCCCceecccHHHHHHHHHHHHHHHHHHHHH Confidence 888776654321 11 11 1111 11111 235677776666666666689999999999999988899999999 Q ss_pred HHHHcCCceEEEecCCCCCHHHHHHHHHHHHHhhc-----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 226 MLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGH-----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAV 300 (526) Q Consensus 226 f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~-----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~i 300 (526) |....++|--|.+++...++++++++.+.+.+..+ ...+|++.|++++-+..+ ..-..|.+..++...+|++++ T Consensus 216 ~f~ng~~p~gil~~~~~ls~e~~~~~~~~~~~~~~G~~nag~~~vl~~g~~~~~l~~~-~~d~q~~e~~~~~~~~Ia~~f 294 (457) T protein:vir:62 216 FFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMS-PDEAQFLQTRQFQVPEIARIF 294 (457) T ss_pred HHhccCCcceEEEcCCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCC-hhHHHHHHHHHHHHHHHHHHh Confidence 99999999999999998999999999888887633 236889999988777543 222357778888999999998 Q ss_pred hchhhhcccccccchhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCH Q lcl|Aclame:pro 301 LGGTLTSTTSQSGGGAFAL---GQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADI 377 (526) Q Consensus 301 lGqtltt~~~~~~~gS~a~---~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl 377 (526) ..+..-.+..+ .+++.. .+........-+..-++.|+..||+.|+...-. ...+-+|.++.....|. T Consensus 295 gVPp~~lg~~~--~~~~~~sn~eq~~~~f~~~~l~P~~~~ie~~ln~~L~~~~~~--------~~~~i~fd~~~l~~~d~ 364 (457) T protein:vir:62 295 GVPPHLISDAT--NSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETAD--------RFRFVKFNLDEIKRGAP 364 (457) T ss_pred CCCHHHcCCCC--CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccc--------CceEEEeechhhhccCH Confidence 66654332222 232222 222233345567788888888888877654211 11123344444446799 Q ss_pred HHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCcc--chhcccCC----------Cccccccccccccccccccccccccc Q lcl|Aclame:pro 378 TSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKN--EPVLRSAA----------QPAILSRQHGQRVAALATIVGPRYGD 445 (526) Q Consensus 378 ~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~--e~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (526) +.+++.+.++++.|+ ++.+++|+.+|+|+.+++ ++...+.. .+++.................+.... T Consensus 365 ~~r~~~~~~~~~~G~-~T~NE~R~~~gl~pi~~g~~D~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (457) T protein:vir:62 365 KERMELWSLGLQNGI-YSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAE 443 (457) T ss_pred HHHHHHHHHHHhCCC-cCHHHHHHHhCCCCCCCCCcceeeeccccccccccccccccCCCccCCCCccCCCCCCCCCCCC Confidence 999999999999997 999999999999887665 43332210 00000000000000000000000000 Q ss_pred ccchHHHHHHHHHHHH Q lcl|Aclame:pro 446 QQALDKALADLPAKDM 461 (526) Q Consensus 446 ~~~~~~~~~~~~~~~~ 461 (526) . ..++.-.+...+ . T Consensus 444 ~-~~d~~~~~~~~~-~ 457 (457) T protein:vir:62 444 G-DPDEGETEDDDD-A 457 (457) T ss_pred C-CCcccccccccc-C Confidence 0 000000000000 0 No 53 >protein:vir:960 Length: 413 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076614;genbank:gi:13095722;genbank:GeneID:920279 Probab=99.84 E-value=2.1e-19 Score=123.02 Aligned_cols=397 Identities=9% Similarity=-0.001 Sum_probs=238.3 Q ss_pred CCeeecCC---C-CccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHH Q lcl|Aclame:pro 1 MAQIVDVY---G-NPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFA 76 (526) Q Consensus 1 m~~~~~~~---g-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s 76 (526) |+-+=|.. + +.|+.+.-..... .........+....++..+..-+ ..+. +..++ +.+.|.+ T Consensus 1 ~~~~~~~~~~~~m~~F~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------~~~~~-~~~~v~~ 65 (413) T protein:vir:96 1 MPGVSEIRKDKNLKFFNNKRSPTEES----KAKDEIPKAPQVVMTLPNFFKEL---ISDG-------YTKLS-DSPEVRM 65 (413) T ss_pred CCccchhhhhhcCCccccCCCcchhh----hhhccccccccccccchhhHhhh---ccch-------hHHHh-hchHHHH Confidence 44222222 1 2333322110000 00000011111122222221111 1111 11122 4789999 Q ss_pred HHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEe Q lcl|Aclame:pro 77 EMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPL 151 (526) Q Consensus 77 ~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~ 151 (526) |+..+...|.+++|.+....++.. +....-+...|+..| ...+++..+. +.+.+|.+++++++...++ .+. T Consensus 66 cI~~ia~~ia~~~~~~~~~~~~~~--~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~r~~~g~--~~~ 141 (413) T protein:vir:96 66 AVDCIADLVSNMTIQLMQNGETGD--KRIKNDLSRVVDIEPNKYLSRKTFIQWLVRSMLLEGNGNAVVKPQVSGD--KII 141 (413) T ss_pred HHHHHHHhhccCceEEEEecCCCc--cccccHHHHHHHhccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCC--ceE Confidence 999999999999999965433221 122223344443322 2456666666 5778999999998766554 345 Q ss_pred eeeeecCceeEecccCCceEEeccCCCCceeecCCCeEEEeecCCC-CccccchhHHHHHHHHHHHHHHHHHHHHHHHHc Q lcl|Aclame:pro 152 AFHHRPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARS-GYVARSGLFRVLAWPYLFRHYATSDLAEMLEIY 230 (526) Q Consensus 152 ~l~~r~~~~f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~-g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~ 230 (526) .|.+.++.++++..+.+. +.+... ..+..+++...|++++.... +..+|.|.+..+......-....++...|.... T Consensus 142 ~L~~l~~~~v~~~~~~~~-~~y~~~-~~~~~~~~~evih~k~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng 219 (413) T protein:vir:96 142 GLTPISPYKVTFNVSDDD-LDYSIT-FDNKEYDPSTLLHFVLNPSIERPFIGTGYKVALKDIVGNLKQASVTKKGFMASE 219 (413) T ss_pred EEEEecCceeEEEEcCCe-EEEEEe-ecCcEEchhhEEEEeccCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 788999988887766544 333322 23345777777776765433 345799999999999988889999999999999 Q ss_pred CCceEEEecCCCCCHHHHHHHHHHHHHhhc-----CeEEEecCCce-EEEeecCCCChHHHHHHHHHHHHHHHHHHhchh Q lcl|Aclame:pro 231 GLPIRLGKYPPGTADEEKATLLRAVTGLGH-----AAAGIIPETMA-IDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGT 304 (526) Q Consensus 231 G~P~~vgk~~~~~~~~e~~~l~~al~~~~~-----~~~~iip~~~~-ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqt 304 (526) |.|--+.+++...++++++++.+.+.+.-+ ...+|++.|+. +.-+..-+.....|.+..++..++|++++..+. T Consensus 220 ~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVP~ 299 (413) T protein:vir:96 220 YMPNLIVSVDSDSDELSDEEGRENFEEMYLKRKEAGKPWIIPEGMVNVQQIKPLTLNDLAINDAVTLDKKTVAGIFGVPA 299 (413) T ss_pred CCccEEEEeCCCCCHHHHHHHHHHHHHHhcCccccCceeeecCCcccccccccCChhHHHHHHHHHHHHHHHHHHhCCCH Confidence 999999999998999999998888877532 23467777754 222211122223566777888999999987765 Q ss_pred hhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHH Q lcl|Aclame:pro 305 LTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSI 384 (526) Q Consensus 305 ltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~ 384 (526) --.+.+ .++.+ ........-+.-.++.|++.||+.|++. ..+-+|.+......|.+.+++++ T Consensus 300 ~~lg~~---~~~~~---~~~~~~~~~l~P~~~~ie~~ln~~ll~~------------~~~~~fd~~~ll~~d~~~~~~~~ 361 (413) T protein:vir:96 300 FLLGVG---TYNKD---EFNNFINTKIMSIAQVIQQTYNKLIVEE------------DMYFSLNPRSLYNYSLTEMVSAG 361 (413) T ss_pred HHcCCC---cchHH---HHHHHHHHHHHHHHHHHHHHHHHhhCCC------------CcEEEEechhhhccCHHHHHHHH Confidence 433211 12232 2334455678888999999999877531 12334444445567899999999 Q ss_pred HHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccc Q lcl|Aclame:pro 385 PALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATI 438 (526) Q Consensus 385 ~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (526) .+++..|+ ++.+++|+.+|+|+-+.++....+....+ .......+......+ T Consensus 362 ~~~~~~G~-~t~NE~R~~~g~~p~~~gd~~~~~~n~~~-~~~~~~~~~~~~~dt 413 (413) T protein:vir:96 362 AQMTQLNA-LRRNEFRNWVGMPPDAEMDDLLVLENYLQ-QKDLVNQKKLIQDET 413 (413) T ss_pred HHHHhCCC-cCHHHHHHHhCCCCCCCcceeeecccccc-hhhcccccCCCCCCC Confidence 99999998 99999999999987766665543322111 111111111100000 No 54 >protein:vir:94426 Length: 409 # NCBI annotation: ORF009 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240003;genbank:gi:66395665;genbank:GeneID:5133086 Probab=99.84 E-value=1e-19 Score=124.71 Aligned_cols=400 Identities=13% Similarity=0.073 Sum_probs=228.0 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |++ ..--..|+.+-+.+.......+.. .|..|.... +..+-.....+-+.|.+|+.. T Consensus 1 ~~~--~~~~~~~k~~~~~~~~~~~~~~~~-~~~~~~~~~--------------------~~~v~~~~a~~~~~v~~~i~~ 57 (409) T protein:vir:94 1 MAK--ENIVTRIKKKLIDNWIDQSASKLY-DFSPWKNKS--------------------FWGVINNTLETNETIFSAITK 57 (409) T ss_pred Ccc--cccchhhhhHHhhhhhcCCccccc-ccccccCcc--------------------ccccchhhhhccHHHHHHHHH Confidence 665 222222322222111111111110 011110000 000111112257789999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCc Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQS 159 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~ 159 (526) +-..|.+++|.+.-..+. .+..+.+.+..-=+..-...++++.++ +.+.+|-+.++++++..| .|..|.+.++. T Consensus 58 Ia~~ia~lp~~~~~~~~~--~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G---~~~~L~~l~~~ 132 (409) T protein:vir:94 58 LSNSMASLPLKMYEDYKV--VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYH---QPSKLFLLNPD 132 (409) T ss_pred HHHhhhhCceeEeecccc--cchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCC---cEEEEEEEcCc Confidence 999999999998754332 222333333221111113456666555 578899999999775443 36689999998 Q ss_pred eeEecccC-CceEEeccCCCC--ceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEE Q lcl|Aclame:pro 160 WFQLNPED-QNELRLRDNSPA--GEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRL 236 (526) Q Consensus 160 ~f~~~~~~-~~~l~~~~~~~~--g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~v 236 (526) ++.+..+. ...+.+.-.... ...+++...+++++....+..+|.|.+..+....-..... ..|. |..-...|..+ T Consensus 133 ~v~v~~~~~~~~~~y~~~~~~g~~~~~~~~dvih~r~~~~~~~~~G~s~l~~~~~~i~~~~~~-~~~~-~~~~~~~~~~i 210 (409) T protein:vir:94 133 VVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAV-RTFN-LTEMQKPDSFM 210 (409) T ss_pred eeEEEEeCCCcEEEEEEEcCCceEEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHH-HHHH-HHhcCCCCeeE Confidence 87765432 233433333333 3456777766666555566778999988887655555444 3342 22222344567 Q ss_pred EecCCCCCHHHHHHHHHHHHHhhcC--eEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccc Q lcl|Aclame:pro 237 GKYPPGTADEEKATLLRAVTGLGHA--AAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGG 314 (526) Q Consensus 237 gk~~~~~~~~e~~~l~~al~~~~~~--~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~ 314 (526) .+++...++++++++.+.+.+...+ ..++++.|++++-++.+ .....|.+..++..++|++++..+.--.+. .+. T Consensus 211 ~~~~~~l~~e~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~-~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~--~~~ 287 (409) T protein:vir:94 211 LKYGSNVGKEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKK-YVSEDIVASENLTRERVANVFQLPSVFLNA--RSN 287 (409) T ss_pred EecCCCCCHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCC-hhHHHHHHHHHHHHHHHHHHhCCCHHHhCC--CCC Confidence 7788888999999888888776554 46788888887766533 223357778888899999998777544432 223 Q ss_pred hhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecC--ccccCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 315 GAFALGQVHNEV-RHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDL--REQADITSMAQSIPALVNVG 391 (526) Q Consensus 315 gS~a~~~vh~~v-~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~--~e~edl~~~a~~~~~l~~~G 391 (526) ++++..+-+... ...-+.--++.|+..||+.|++..- . ... .+|+|+. ....|.+.+++++.++++.| T Consensus 288 ~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~~Ll~~~~---~----~~~--~~i~fd~~~ll~~d~~~~~~~~~~~~~~G 358 (409) T protein:vir:94 288 TNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTD---R----EKN--RYFKFNVKSYLRADSATQAEVYFKAVRSG 358 (409) T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc---c----cCc--ceEEeechhhhccCHHHHHHHHHHHHhCC Confidence 455554444433 4556778888899999887765321 0 011 2355543 33578999999999999999 Q ss_pred CcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccc Q lcl|Aclame:pro 392 LEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYG 444 (526) Q Consensus 392 ~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (526) + ++.+++|+.+|+|+-+.++....+.... +.......+.....+....... T Consensus 359 ~-~T~NE~R~~~g~~p~~ggD~~~~~~n~~-~~~~~~~~~~~~kGG~~n~~e~ 409 (409) T protein:vir:94 359 Y-YTINDIREWEDLPPVEGGDKPLISGDLY-PIDTPLELRKSLKGGDKNVNES 409 (409) T ss_pred C-cCHHHHHHHhCCCCCCCcCeEeeccccc-ccccchhhcccccCCCCCcCCC Confidence 7 9999999999999877666655432211 1111111111111110000000 No 55 >protein:vir:81095 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429872;genbank:gi:156603925;genbank:GeneID:5525315 Probab=99.84 E-value=4e-20 Score=126.92 Aligned_cols=398 Identities=10% Similarity=-0.002 Sum_probs=227.0 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+ |... ..+. ....+. .+...+...+-..-......+ . +.-..+.+.|.+|+.. T Consensus 1 Mg-~f~~---~~~r-~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~-~--~~~al~~~~v~~cv~~ 54 (416) T protein:vir:81 1 MG-IFYK---NEKR-DLQYNE------------------DDLQMMVQTLPGFQGTKLRQY-K--DIEAIRHSDIFTAVMM 54 (416) T ss_pred CC-cccc---cccc-cccCCC------------------cchhHHHHHhccccccCcccc-c--hhhhhcchHHHHHHHH Confidence 77 3322 1111 110000 000000111000000000000 0 0011256779999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcC----HHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeee Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEG----LEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHH 155 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~----~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~ 155 (526) +-..|.+++|.+...+... ...-+...|+..|+ ..++++.+. +.+.+|.++++++++..| .|..|.+ T Consensus 55 Ia~~iA~~p~~~~~~~~~~-----~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G---~~~~L~~ 126 (416) T protein:vir:81 55 IASDLARMPIRVTVNGQIN-----YSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTG---EPMNLTF 126 (416) T ss_pred HHHhhccCceEEecCcccc-----ccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCC---cEEEEEE Confidence 9999999999997533211 12223344443332 345666555 467899999999875443 3678999 Q ss_pred ecCceeEecccCCceEEeccC----CCCc--eeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 156 RPQSWFQLNPEDQNELRLRDN----SPAG--EALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEI 229 (526) Q Consensus 156 r~~~~f~~~~~~~~~l~~~~~----~~~g--~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~ 229 (526) .++.+++...+..+.+.+... ...+ ..+++...|+.++.. .+..+|.|.+..+....-.-....++...|... T Consensus 127 i~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~evihir~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~n 205 (416) T protein:vir:81 127 RKTSEIELKSDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRN 205 (416) T ss_pred EcCceeEEEECCCccEEEEEEEecCCCceeEEEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 999988776655555444321 1111 357777766666543 456799999999999888888888889999999 Q ss_pred cCCceEEEecCCCCC-HHHHHHHHHHHHHhhc-----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhch Q lcl|Aclame:pro 230 YGLPIRLGKYPPGTA-DEEKATLLRAVTGLGH-----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGG 303 (526) Q Consensus 230 ~G~P~~vgk~~~~~~-~~e~~~l~~al~~~~~-----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGq 303 (526) .+.|--|.+++...+ ++.++++.+.+..... ...+|++.|++++-++.+ ..-..|.+..++..++|++++..+ T Consensus 206 g~~~~gil~~~~~~~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~-~~d~q~~e~~~~~~~~Ia~~fgVP 284 (416) T protein:vir:81 206 GTHAGGILKMKGVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVD-TEVLKLIRENKSSTREIAGVFGIP 284 (416) T ss_pred cCCCcEEEEeCCCCCCHHHHHHHHHHHHHHhcCccccCceeecCCCceeEeccCC-HHHHHHHHHHHHHHHHHHHHhCCC Confidence 999999999987654 4556666666655422 236888999887766533 222347778889999999998766 Q ss_pred hhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHH Q lcl|Aclame:pro 304 TLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQS 383 (526) Q Consensus 304 tltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~ 383 (526) .--.+. ++.+.|.... +..+..-+.-.++.|+..||+.|.+.. . ..+-+|.++.....|.+.+++. T Consensus 285 p~~lg~-~~~~~~~~~~---~~~~~~~l~P~~~~ie~~ln~~l~~~~-----~-----~~~~~f~~~~l~~~D~~~~~~~ 350 (416) T protein:vir:81 285 LHKFGI-ETANMSITDA---NLDYLSTLKPYITCVCAELNFKFNDEY-----V-----NREFKFDTTEIRVVDEKTQAEI 350 (416) T ss_pred HHHcCC-CCCCccHHHH---HHHHHHHHHHHHHHHHHHHhhhccccc-----c-----CceEEEechhhhccCHHHHHHH Confidence 432321 1111122211 112334677888888888887764321 1 1122344444456789999999 Q ss_pred HHHHHhCCCcCCHHHHHHHhCCCCCCccch-hcccCCCcccccccccccccccccccccccccccchH Q lcl|Aclame:pro 384 IPALVNVGLEIPSAWVYDKLGIPQPAKNEP-VLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALD 450 (526) Q Consensus 384 ~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (526) +.++++.|+ ++.+++|+++|+|+-++++. +........+.................+.... +.-+ T Consensus 351 ~~~~~~~G~-~T~NE~R~~~gl~p~~~gd~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~kgG-e~n~ 416 (416) T protein:vir:81 351 DKINIDSGK-MNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELVDEYQMNKSRATDKKLKGG-EENE 416 (416) T ss_pred HHHHHhCCC-cCHHHHHHHhCCCCCCCCCcceEeecccccccccccccCcccccccccccCCC-CCCC Confidence 999999997 99999999999987666553 22211111111100000000000000000000 0000 No 56 >protein:vir:4598 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058443;genbank:gi:9635169;genbank:GeneID:1262702 Probab=99.84 E-value=4e-20 Score=126.92 Aligned_cols=398 Identities=10% Similarity=-0.002 Sum_probs=227.0 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+ |... ..+. ....+. .+...+...+-..-......+ . +.-..+.+.|.+|+.. T Consensus 1 Mg-~f~~---~~~r-~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~-~--~~~al~~~~v~~cv~~ 54 (416) T protein:vir:45 1 MG-IFYK---NEKR-DLQYNE------------------DDLQMMVQTLPGFQGTKLRQY-K--DIEAIRHSDIFTAVMM 54 (416) T ss_pred CC-cccc---cccc-cccCCC------------------cchhHHHHHhccccccCcccc-c--hhhhhcchHHHHHHHH Confidence 77 3322 1111 110000 000000111000000000000 0 0011256779999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcC----HHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeee Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEG----LEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHH 155 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~----~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~ 155 (526) +-..|.+++|.+...+... ...-+...|+..|+ ..++++.+. +.+.+|.++++++++..| .|..|.+ T Consensus 55 Ia~~iA~~p~~~~~~~~~~-----~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G---~~~~L~~ 126 (416) T protein:vir:45 55 IASDLARMPIRVTVNGQIN-----YSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTG---EPMNLTF 126 (416) T ss_pred HHHhhccCceEEecCcccc-----ccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCC---cEEEEEE Confidence 9999999999997533211 12223344443332 345666555 467899999999875443 3678999 Q ss_pred ecCceeEecccCCceEEeccC----CCCc--eeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 156 RPQSWFQLNPEDQNELRLRDN----SPAG--EALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEI 229 (526) Q Consensus 156 r~~~~f~~~~~~~~~l~~~~~----~~~g--~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~ 229 (526) .++.+++...+..+.+.+... ...+ ..+++...|+.++.. .+..+|.|.+..+....-.-....++...|... T Consensus 127 i~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~evihir~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~n 205 (416) T protein:vir:45 127 RKTSEIELKSDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRN 205 (416) T ss_pred EcCceeEEEECCCccEEEEEEEecCCCceeEEEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 999988776655555444321 1111 357777766666543 456799999999999888888888889999999 Q ss_pred cCCceEEEecCCCCC-HHHHHHHHHHHHHhhc-----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhch Q lcl|Aclame:pro 230 YGLPIRLGKYPPGTA-DEEKATLLRAVTGLGH-----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGG 303 (526) Q Consensus 230 ~G~P~~vgk~~~~~~-~~e~~~l~~al~~~~~-----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGq 303 (526) .+.|--|.+++...+ ++.++++.+.+..... ...+|++.|++++-++.+ ..-..|.+..++..++|++++..+ T Consensus 206 g~~~~gil~~~~~~~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~-~~d~q~~e~~~~~~~~Ia~~fgVP 284 (416) T protein:vir:45 206 GTHAGGILKMKGVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVD-TEVLKLIRENKSSTREIAGVFGIP 284 (416) T ss_pred cCCCcEEEEeCCCCCCHHHHHHHHHHHHHHhcCccccCceeecCCCceeEeccCC-HHHHHHHHHHHHHHHHHHHHhCCC Confidence 999999999987654 4556666666655422 236888999887766533 222347778889999999998766 Q ss_pred hhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHH Q lcl|Aclame:pro 304 TLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQS 383 (526) Q Consensus 304 tltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~ 383 (526) .--.+. ++.+.|.... +..+..-+.-.++.|+..||+.|.+.. . ..+-+|.++.....|.+.+++. T Consensus 285 p~~lg~-~~~~~~~~~~---~~~~~~~l~P~~~~ie~~ln~~l~~~~-----~-----~~~~~f~~~~l~~~D~~~~~~~ 350 (416) T protein:vir:45 285 LHKFGI-ETANMSITDA---NLDYLSTLKPYITCVCAELNFKFNDEY-----V-----NREFKFDTTEIRVVDEKTQAEI 350 (416) T ss_pred HHHcCC-CCCCccHHHH---HHHHHHHHHHHHHHHHHHHhhhccccc-----c-----CceEEEechhhhccCHHHHHHH Confidence 432321 1111122211 112334677888888888887764321 1 1122344444456789999999 Q ss_pred HHHHHhCCCcCCHHHHHHHhCCCCCCccch-hcccCCCcccccccccccccccccccccccccccchH Q lcl|Aclame:pro 384 IPALVNVGLEIPSAWVYDKLGIPQPAKNEP-VLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALD 450 (526) Q Consensus 384 ~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (526) +.++++.|+ ++.+++|+++|+|+-++++. +........+.................+.... +.-+ T Consensus 351 ~~~~~~~G~-~T~NE~R~~~gl~p~~~gd~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~kgG-e~n~ 416 (416) T protein:vir:45 351 DKINIDSGK-MNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELVDEYQMNKSRATDKKLKGG-EENE 416 (416) T ss_pred HHHHHhCCC-cCHHHHHHHhCCCCCCCCCcceEeecccccccccccccCcccccccccccCCC-CCCC Confidence 999999997 99999999999987666553 22211111111100000000000000000000 0000 No 57 >protein:vir:9702 Length: 406 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795464;genbank:gi:28876227;genbank:GeneID:1257772 Probab=99.83 E-value=9.2e-20 Score=124.96 Aligned_cols=387 Identities=11% Similarity=0.016 Sum_probs=225.1 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHH-HHHHHHcccCCCH-HHHHHHHHHHHhccHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAK-LARILVEAEQGNL-QAQAELFMDMEERDAHLFAEM 78 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~l~~a~~g~~-~~~~~l~~~m~~~D~~v~s~l 78 (526) |+= ..+ +... ..++.. +..++ .|+. ..+.... -.+-+.|.+|+ T Consensus 1 m~~-f~~-------~~~~--------------------~~~~~~~~~~~~----~~~~~~~~~~~~---Al~~~~V~~~i 45 (406) T protein:vir:97 1 MSF-FQP-------LGTS--------------------KVSYDDYISSVL----AGDVSQKYLGVS---ALKNSDILTAT 45 (406) T ss_pred Ccc-ccc-------cCCC--------------------CCCcchHHHHHh----cCCCCcccccch---hhccHHHHHHH Confidence 652 221 1000 001111 11111 0000 0111110 11457889999 Q ss_pred HHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeee Q lcl|Aclame:pro 79 SKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAF 153 (526) Q Consensus 79 ~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l 153 (526) ..+...|.++++.+.-.+.....+ .-+..+|+..| ...++++.++ +.+.+|.++++++++..+| .+..| T Consensus 46 ~~Ia~~iA~lp~~~~~~~g~~~~~----~~~~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gnay~~i~r~~~~g--~~~~L 119 (406) T protein:vir:97 46 SIIAGDIARFPLVKKDVNGDIIHD----EDINYLLNVKSTSNASARTWKFAMAVNAILTGNSFSRILRDPKTN--QALQF 119 (406) T ss_pred HHHHHhhhhCeeEEEecCcccccc----chHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCC--eEEEE Confidence 999999999999877443321111 22344454322 2456666555 5678999999998754444 45689 Q ss_pred eeecCceeEecccCCceEEecc---CCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHc Q lcl|Aclame:pro 154 HHRPQSWFQLNPEDQNELRLRD---NSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIY 230 (526) Q Consensus 154 ~~r~~~~f~~~~~~~~~l~~~~---~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~ 230 (526) .++++..+++.......+.++- .+.....+++...|+.++.+ .+..+|.|.+..+....-.-....++...|.+.- T Consensus 120 ~~i~p~~v~v~~~~~~~~~y~~~~~~~~~~~~~~~~evih~r~~~-~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng 198 (406) T protein:vir:97 120 QFYRPSETTVEETDNHEIVYTFTDMLTAKQVKCFAHDVIHWKFFS-HDTILGRSPLLSLGDEIDLQTGGINTLIKFFKDG 198 (406) T ss_pred EEECCCeeEEEEcCCceEEEEEEecCCceEEEEccccEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 9999998887655444444432 22233457777776666544 3446799999988887777778888888888877 Q ss_pred CCceEEEecCCCCCHHHHHHHHHHHHHhhc----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhh Q lcl|Aclame:pro 231 GLPIRLGKYPPGTADEEKATLLRAVTGLGH----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLT 306 (526) Q Consensus 231 G~P~~vgk~~~~~~~~e~~~l~~al~~~~~----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtlt 306 (526) +.|-.+-+.+...++++++++.+.+.+..+ ...+|++.|++++-++.+. .-..|.+..++..++|++++..+.-- T Consensus 199 ~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~-~d~q~le~~~~~~~~Ia~afgVPp~~ 277 (406) T protein:vir:97 199 FSSGILTMKGAQLSGDARQRARQEFEKMREGSVGGSPLVFDSTMEYTPLEIDT-NVLQLITSNNFSTAQIAKALRVPSYK 277 (406) T ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHhcccccCceeecCCCceEEEccCCH-HHHHHHHHHHhhHHHHHHHhCCCHHH Confidence 777777777777888988888888877643 2367889999888776432 12236667778889999998655443 Q ss_pred cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHH Q lcl|Aclame:pro 307 STTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPA 386 (526) Q Consensus 307 t~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~ 386 (526) .+.. ..+| +..+........-+.-.++.|++.||+.|+..-.. . .-+++|+. ..+++..++.+.+ T Consensus 278 lg~~--~~~~-~~e~~~~~f~~~~l~P~~~~ie~~l~~kll~~~~~---------~-~~~i~fd~--~~~~~~~~~~~~~ 342 (406) T protein:vir:97 278 LGVN--SPNQ-SVAQLMEDYVTNDLPFYFDAITSELGLKTLNDKDR---------R-LYHIEFDT--RSVTGRNVDEIVK 342 (406) T ss_pred cCCC--CCcc-hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcChhhc---------c-ceeEEEec--CccchhhHHHHHH Confidence 3211 1122 22233333445667788888999998877542111 0 11355554 3467777888889 Q ss_pred HHhCCCcCCHHHHHHHhCCCCCCc--cchhcccCCCccccccccccc---cccccccccccccccc Q lcl|Aclame:pro 387 LVNVGLEIPSAWVYDKLGIPQPAK--NEPVLRSAAQPAILSRQHGQR---VAALATIVGPRYGDQQ 447 (526) Q Consensus 387 l~~~G~~v~~~~~~e~~Glp~~~~--~e~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 447 (526) +++.|+ ++.+++|+++|+|+-.+ ++....+... .+........ .....+........+. T Consensus 343 ~~~~g~-~T~NE~R~~~g~~p~~~~~gD~~~~~~n~-~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 406 (406) T protein:vir:97 343 LVNNQI-LTPNQGLVELGKQKSTDPNMDRYQSSLNY-VFLDKKEEYQDKVGIKGKGGEVNAEEDKS 406 (406) T ss_pred HHhCCC-cCHHHHHHHhCCCCCCCCCCCeEeeccCc-cchhcccccccccccccCCCCCCCCCCCC Confidence 999997 99999999999987544 3443332111 1111110000 0011111111111111 No 58 >protein:vir:2683 Length: 412 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075502;genbank:gi:12719431;genbank:GeneID:920150 Probab=99.83 E-value=2.9e-19 Score=122.18 Aligned_cols=401 Identities=12% Similarity=0.052 Sum_probs=230.6 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccC-HHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLT-PAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMS 79 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~ 79 (526) |+-| ..-|-- +.++.+..... ...+..+++ +..|. .. . +..+......+-+.|.+|+. T Consensus 1 m~~~-~~~~~~---~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~--~-----~~~v~~~~a~~~~~v~~~i~ 59 (412) T protein:vir:26 1 MNVI-AKENIV---TRIKKKLIDNW-------IDQSTSKLYDFSPWK---NR--S-----FWGVINNTLETNETIFSAIT 59 (412) T ss_pred Cccc-hhhhhh---hhhhhhHhhhh-------hcccccccccccccC---Cc--c-----ccccchhhhhccHHHHHHHH Confidence 7632 111110 11111111111 011111111 11110 00 0 00111122236788999999 Q ss_pred HHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecC Q lcl|Aclame:pro 80 KRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQ 158 (526) Q Consensus 80 ~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~ 158 (526) .+-..|.+++|.+.-..+ ..+......+..-=+......++++.++ +.+.+|-++++++.+..| .+..|.+.++ T Consensus 60 ~ia~~iA~lp~~~~~~~~--~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G---~~~~L~~l~~ 134 (412) T protein:vir:26 60 KLSNSMASLPLKMYEDYK--VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYH---QPSKLFLLNP 134 (412) T ss_pred HHHHhHhhCceeEeeccc--cccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCC---cEEEEEEEcC Confidence 999999999998864332 2222333333221111112456666555 678899999999765443 3568889998 Q ss_pred ceeEecccC-CceEEeccCCCC--ceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcC-Cce Q lcl|Aclame:pro 159 SWFQLNPED-QNELRLRDNSPA--GEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYG-LPI 234 (526) Q Consensus 159 ~~f~~~~~~-~~~l~~~~~~~~--g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G-~P~ 234 (526) .++.+..+. ...+.+...... ...+++...+++++....+..+|.|.+..+....-..... ..|. + ..++ .|- T Consensus 135 ~~v~v~~~~~~~~~~y~~~~~~g~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~a~-~~~~-~-~~~~~~~~ 211 (412) T protein:vir:26 135 DVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAV-RTFN-L-TEMQKPDS 211 (412) T ss_pred ceeEEEEeCCCcEEEEEEEcCCceEEEEccccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHH-HHHH-H-HhcCCCCc Confidence 877765433 233444433333 3457777766666655667788999988887655554444 3342 2 3333 445 Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhhcC--eEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccc Q lcl|Aclame:pro 235 RLGKYPPGTADEEKATLLRAVTGLGHA--AAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQS 312 (526) Q Consensus 235 ~vgk~~~~~~~~e~~~l~~al~~~~~~--~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~ 312 (526) .+.+++...++++++++.+.+.+...+ ..+|++.|++++-++.+ .....|.+..++..++|++++..+..-.+. + T Consensus 212 ~i~~~~~~l~~e~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~-~~d~q~~e~~~~~~~~Ia~afgVPp~~lg~--~ 288 (412) T protein:vir:26 212 FMLKYGSNVGKEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKK-YVSEDIVASENLTRERVANVFQLPSVFLNA--R 288 (412) T ss_pred eEEecCCCCCHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCC-hhHHHHHHHHHHHHHHHHHHhCCCHHHhCC--C Confidence 667788888899998888888775443 46778888887766533 223357778888889999998777544432 2 Q ss_pred cchhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCc--cccCHHHHHHHHHHHHh Q lcl|Aclame:pro 313 GGGAFALGQVHNEV-RHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLR--EQADITSMAQSIPALVN 389 (526) Q Consensus 313 ~~gS~a~~~vh~~v-~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~--e~edl~~~a~~~~~l~~ 389 (526) +.++++..+.+... ...-+.-.++.|+..||+.|+...- .. .. .+|+|+.. ...|.+++++.+.++++ T Consensus 289 ~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~kLl~~~~---~~----~~--~~~~fd~~~l~~~d~~~~~~~~~~~~~ 359 (412) T protein:vir:26 289 SNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTD---RE----KN--RYFKFNVKSYLRADSATQAEVYFKAVR 359 (412) T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc---cc----Cc--ceEEeechhhhccCHHHHHHHHHHHHh Confidence 34566666655544 3556888999999999988765321 10 11 23555543 45789999999999999 Q ss_pred CCCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccc Q lcl|Aclame:pro 390 VGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYG 444 (526) Q Consensus 390 ~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (526) .|+ ++.+++|+.+|+|+-+.++....+..-. +.......+.....+....... T Consensus 360 ~G~-~t~NE~R~~~gl~p~~ggD~~~~~~n~~-~~~~~~~~~~~~~gG~~n~~e~ 412 (412) T protein:vir:26 360 SGY-YTINDIREWEDLPPVEGGDKPLISGDLY-PIDTPLELRKSLKGGDKNVNES 412 (412) T ss_pred CCC-cCHHHHHHHhCCCCCCCcCeeeeccccc-ccccchhhcccccCCCCCcCCC Confidence 998 9999999999999877776655432211 1111111111111111000000 No 59 >protein:vir:95378 Length: 406 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764474;genbank:gi:115334628;genbank:GeneID:5179265 Probab=99.82 E-value=3.3e-19 Score=121.91 Aligned_cols=391 Identities=12% Similarity=0.030 Sum_probs=234.1 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhh-hhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQ-HPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMS 79 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~ 79 (526) |+ |.+...+..+.+..+. .+ .....+.. ....+.+ ..+ ..++ +.+.|.+|+. T Consensus 1 Mg-~f~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~----------------~~~----~~~~-~~~~v~~~i~ 53 (406) T protein:vir:95 1 MG-LFDRWRRTKRKSKIRA-DT----GYVGLFMSGEDVSFLV----------------PGY----VRLS-DNPEVRMAVH 53 (406) T ss_pred Cc-chhhhccccccccccc-cc----hhhhhhccCcccCccc----------------cCH----HHHh-hcHHHHHHHH Confidence 99 7777655432222111 11 00001100 0000000 001 1122 5799999999 Q ss_pred HHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHHH-hhhh--cceeeeEEEeecCCeeEEee Q lcl|Aclame:pro 80 KRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDALD-GIGH--GYSCIELEWALQGREWMPLA 152 (526) Q Consensus 80 ~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~ld-a~~~--G~s~~Ei~w~~~~g~~~~~~ 152 (526) .+...+.+++|.|....++... ....-+...|...| .+.++++.++. .+.+ ||+++++++...+ .|.. T Consensus 54 ~ia~~ia~~~~~~~~~~~~~~~--~~~~~~~~~l~~~PN~~~t~~~f~~~~~~~~ll~g~g~a~~~~~~~~~g---~~~~ 128 (406) T protein:vir:95 54 KIADLISSMTIYLMQNTEDGDI--RIRNELSRKIDITPYSLMTRKSWMYNIVYTMLLDGEGNSVVFPKYTADG---LIDE 128 (406) T ss_pred HHHHhhccCceEEEEecCCcce--eecchHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCceEEEEEEECCCC---cEEE Confidence 9999999999999644432211 11122223333322 35677777764 4444 6777777764432 4778 Q ss_pred eeeecCceeEecccCCceEEeccCCCCceeecCCCeEEEeecCCC-CccccchhHHHHHHHHHHHHHHHHHHHHHHHHcC Q lcl|Aclame:pro 153 FHHRPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARS-GYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYG 231 (526) Q Consensus 153 l~~r~~~~f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~-g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G 231 (526) +.+.++.++++..+.+.. .+.. .+..+++...+++++...+ +..+|.|.+..+....-.-....++...+....+ T Consensus 129 l~~i~~~~v~~~~~~~~~-~~~~---~~~~~~~~evih~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~ 204 (406) T protein:vir:95 129 LVPLTPSKVNFLDTPDGY-QVLY---GGQTFNYDEVLHFIYNPDPERPYIGRGYRVVLKDIADNLKQATATKKSFMSGKY 204 (406) T ss_pred EEEEcCceeEEEEcCCeE-EEEe---ccEEEchhHEEEeeccCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccC Confidence 999999988877665542 2222 3456888887777754443 4457999999999999888899999999999999 Q ss_pred CceEEEecCCCCCHHHHHHHHHHHHHhhc-----CeEEEecCCc-eEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhh Q lcl|Aclame:pro 232 LPIRLGKYPPGTADEEKATLLRAVTGLGH-----AAAGIIPETM-AIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTL 305 (526) Q Consensus 232 ~P~~vgk~~~~~~~~e~~~l~~al~~~~~-----~~~~iip~~~-~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtl 305 (526) .|--+.+++...++++.+.+.+.+.+.-. +..+|++.+. +++-+..-+..-..|.+..++..++|++++..+.- T Consensus 205 ~~~~il~~~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~v~~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~ 284 (406) T protein:vir:95 205 MPSLIVKVDAATAELSSEEGRNAVFKKYLQATEAGQPWIIPAELLEVEQVKPLSLKDIAINEAVELDKRTVAGMFGVPAF 284 (406) T ss_pred CcceEEEeCCCCCHHHHHHHHHHHHHHhccccccCCceeecCCCccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHH Confidence 99999999998899888888777766432 2245666554 44322211222335677888999999999876653 Q ss_pred hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHH Q lcl|Aclame:pro 306 TSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIP 385 (526) Q Consensus 306 tt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~ 385 (526) ..+. +++ ..+........-+.-.++.|+..||+.++.. .+.+-+|.++.....|.+++++.+. T Consensus 285 ~lg~-----~~~-~~~~~~~~~~~~l~P~~~~ie~~l~~~l~~~-----------~~~~~~fd~~~l~~~d~~~~~~~~~ 347 (406) T protein:vir:95 285 LLGI-----GEF-NRDEYNNFINSTILPIAKGIEQELTRKLLIS-----------PDLYFKFNPRSLYAYDLKELAEVGS 347 (406) T ss_pred HcCC-----CCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------CCcEEEeechhhhcCCHHHHHHHHH Confidence 3321 111 1223344556677788888888888766531 1223345455555678999999999 Q ss_pred HHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 386 ALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQ 447 (526) Q Consensus 386 ~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (526) ++++.|+ ++.+++|+.+|+|+-+.++....+....+. ........... +.........+ T Consensus 348 ~l~~~G~-~t~NE~R~~~gl~p~~~gd~~~~~~n~~~~-~~~~~~~~~k~-g~~~~~~~~~~ 406 (406) T protein:vir:95 348 NMYVRGI-MEGNEVRDWLGLSPKEGLSELVILENYIPL-DKIGDQSKLKG-GDNSGADGQTD 406 (406) T ss_pred HHHhCCC-cCHHHHHHHhCCCCCCCcceeeeccCccch-hhcccccccCC-CCCCCCCCCCC Confidence 9999998 899999999999987666655433222111 11111010000 00000000000 No 60 >protein:vir:8317 Length: 409 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817885;genbank:gi:29566318;genbank:GeneID:1259513 Probab=99.82 E-value=1.9e-19 Score=123.26 Aligned_cols=376 Identities=10% Similarity=0.045 Sum_probs=230.3 Q ss_pred CC------------------eeecCC-CCc--cCccccchhhhhhhhhhhh--hhhhhhhcccCHHHHHHHHHcccCCCH Q lcl|Aclame:pro 1 MA------------------QIVDVY-GNP--IRTQQLREPQTSRLAGLAK--EFAQHPAKGLTPAKLARILVEAEQGNL 57 (526) Q Consensus 1 m~------------------~~~~~~-g~p--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~l~~a~~g~~ 57 (526) |+ -++|-. |+| ++++...++....-....+ .|..++. .+++ .+. ... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~--------~~~-~~~ 70 (409) T protein:vir:83 1 MGFWSNLFGIPSIPDLPNDNGPVDYNPGDPDMVEFRGPEEEPEARALPWIRPTAWSGYPE-SWAT--------PSW-GSA 70 (409) T ss_pred CchhhhhcccccCCCcccccccccccCCCCceeeccCCCcchhhhhcccccccccccccc-cccc--------cCc-ccc Confidence 21 123332 333 3333333332221111111 1111110 1111 111 111 Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHHHhhhhc Q lcl|Aclame:pro 58 QAQAELFMDMEERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDALDGIGHG 133 (526) Q Consensus 58 ~~~~~l~~~m~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~lda~~~G 133 (526) .. .-..+-+.|.+|+..+...|.++++.+.-.+. ..+ .+...++..| ...++++.++..+..| T Consensus 71 t~------~~~~~~~~v~acV~~Ia~~iA~lpl~~~~~~~--~~~-----~~~~ll~~~PN~~~t~~~f~~~l~~~lllG 137 (409) T protein:vir:83 71 QD------KLRTLIDVAWACIDLNASVLSSMPIYRMRNGR--IID-----SVAWMSNPDPEVYTSWQEFAKQLFWDFQLG 137 (409) T ss_pred ch------hhHhhhHHHHHHHHHHHHhhccCceEEeeCCc--ccc-----chhhhcccCCCCCCCHHHHHHHHHHHHhhC Confidence 11 11225789999999999999999998874332 111 1222343333 2456666655545558 Q ss_pred ceeeeEEEeecCCeeEEeeeeeecCceeEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHH Q lcl|Aclame:pro 134 YSCIELEWALQGREWMPLAFHHRPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPY 213 (526) Q Consensus 134 ~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~ 213 (526) .+.++++-...+| .|..|.+.++..+++..+.+..+.++-++..+ +...+++++....+..||.|.+..+.... T Consensus 138 nay~~~i~r~~~G--~~~~L~pl~p~~v~v~~~~~g~~~y~~~~~~~----~~eiiHir~~~~~~~~~G~spi~~~~~~i 211 (409) T protein:vir:83 138 EAFVLPMAHGSDG--YPIRFRVVPPWLVNVELKKGARREYRIGGLNV----TDEILHIRYQGNTADAHGHGPLESAAPRQ 211 (409) T ss_pred CcEEEEEEECCCC--cEEEEEEECCcceEEEEcCCceEEEEEccccC----ccceEEeCCCCCCCCcccccHHHHHHHHH Confidence 8887764322233 46789999999887776666655555433222 23333334545567789999999999999 Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHhhcC-e--EEEecCCceE-EEeecCCCChHHHHHHH Q lcl|Aclame:pro 214 LFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGHA-A--AGIIPETMAI-DFQQAAQGSSEPFLAMM 289 (526) Q Consensus 214 ~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~~-~--~~iip~~~~i-e~~~a~~~~~~~~~~li 289 (526) -......++-..|...-+.|--+.+++...++++++++.+......++ + .+++..|+++ +.+..+. .-..|.+.. T Consensus 212 ~~~~a~~~~~~~~f~nga~p~gil~~~~~ls~e~~~~~~~~~~~~~~~nag~~~il~~g~~~~~~~~~s~-~d~q~le~r 290 (409) T protein:vir:83 212 VVIGLLQKYVQNLAETGGVPLYWLGVERRLSETEAVDLMDRWIESRSKYAGHPALVTGGATLNQAKSMSA-QDLSLMELT 290 (409) T ss_pred HHHHHHHHHHHHHHhcCCCcceEeecCCCCCHHHHHHHHHHHHHhhCCccCccceecCCcccccccCCCH-HHHHHHHHH Confidence 988888888888999999999999999989999999888887765432 2 3677777775 3443322 122466777 Q ss_pred HHHHHHHHHHHhchhhhcccc-cccchhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeE Q lcl|Aclame:pro 290 RQSEDAISKAVLGGTLTSTTS-QSGGGAFALGQVHNE-VRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRL 367 (526) Q Consensus 290 ~~~d~~Isk~ilGqtltt~~~-~~~~gS~a~~~vh~~-v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~ 367 (526) ++..++|++++..+....+.. +++..+|+..+-+.. ....-+.-.++.|+..||+.|++. ..+-+| T Consensus 291 ~~~~~eIa~~fgVPp~llg~~~~~~~~tysn~eq~~~~f~~~tL~P~~~~ie~~l~~~Ll~~------------~~~~~f 358 (409) T protein:vir:83 291 QFNEARIAILLGVPPFLVGLPGATGSLTYSNIEQLFSFHDRSSLRPKATAVMAALDRWALPS------------PQHLEL 358 (409) T ss_pred HhhHHHHHHHhCCCHHHccCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC------------CcEEEe Confidence 888999999987775444321 122223443333333 344577788899999999877531 112234 Q ss_pred EecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCC Q lcl|Aclame:pro 368 VFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAA 419 (526) Q Consensus 368 ~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~ 419 (526) .++.....|++++++.++++++.|+ ++.+++|+..|+|+.+.++++-...- T Consensus 359 ~~~~llr~d~~~r~~~~~~~~~~G~-lT~NE~R~~~glpp~~ggd~l~~~gv 409 (409) T protein:vir:83 359 NRDDYTRPSLVERATAYKIMIEAGV-MEPNEARAMERLHSEAAAVRLSGGGV 409 (409) T ss_pred ehhhhhccCHHHHHHHHHHHHhCCC-cCHHHHHHHhCCCCCCCCcccCCCCC Confidence 4444445789999999999999998 99999999999998776665533222 No 61 >protein:vir:93943 Length: 409 # NCBI annotation: ORF010 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239936;genbank:gi:66395598;genbank:GeneID:5131009 Probab=99.82 E-value=4.3e-19 Score=121.28 Aligned_cols=398 Identities=12% Similarity=0.067 Sum_probs=226.2 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccC-HHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLT-PAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMS 79 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~ 79 (526) |.+ ....+|. +.+... .|...+..+++ +..|.. +.. .|. ...-..+-+.|.+|+. T Consensus 1 ~~~-~~~~~~~-~~~~~~------------~~~~~~~~~~~~~~~~~~--~~~-~~v-------~~~~~~~~~~V~~ci~ 56 (409) T protein:vir:93 1 MAK-ENIVTRI-KKKLID------------NWIDQSTSKLYDFSPWKN--RSF-WGV-------INNTLETNETIFSAIT 56 (409) T ss_pred CCc-cchhhhh-hhhhhh------------hhhccccccccccccccC--ccc-ccc-------chhhhhccHHHHHHHH Confidence 554 1122221 111010 11111111111 111110 000 010 0011125778999999 Q ss_pred HHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecC Q lcl|Aclame:pro 80 KRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQ 158 (526) Q Consensus 80 ~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~ 158 (526) .+-..|.+++|.+.-..+ ..+......+..-=+......++++.++ +.+.+|-++++++++..| .+..|.+.++ T Consensus 57 ~Ia~~ia~lp~~~~~~~~--~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G---~~~~L~~l~~ 131 (409) T protein:vir:93 57 KLSNSMASLPLKMYEDYK--VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYH---QPSKLFLLNP 131 (409) T ss_pred HHHHhhhhCceeEeeccc--cccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCC---cEEEEEEEcC Confidence 999999999999875332 2222333333221111112456666555 578899999999875443 3668899999 Q ss_pred ceeEecccC-CceEEeccCCCC--ceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCC-ce Q lcl|Aclame:pro 159 SWFQLNPED-QNELRLRDNSPA--GEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGL-PI 234 (526) Q Consensus 159 ~~f~~~~~~-~~~l~~~~~~~~--g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~-P~ 234 (526) .++.+..+. ...+.++..... ...+++...++.++....+..+|.|.+..+....-......+ +. +..++. |- T Consensus 132 ~~v~~~~~~~~~~~~y~~~~~~g~~~~~~~~eVih~r~~~~~~~~~G~s~i~~~~~~i~~~~~~~~-~~--~~~~~~~~~ 208 (409) T protein:vir:93 132 DVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRT-FN--LTEMQKPDS 208 (409) T ss_pred ceeEEEEeCCCcEEEEEEEcCCceEEEEccccEEEeCCCCCCCccccccHHHHHHHHHHHHHHHHH-HH--HHhcCCCCc Confidence 877765432 333444433333 345777776666655556677899998887665555544333 32 333443 45 Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhhcC--eEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccc Q lcl|Aclame:pro 235 RLGKYPPGTADEEKATLLRAVTGLGHA--AAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQS 312 (526) Q Consensus 235 ~vgk~~~~~~~~e~~~l~~al~~~~~~--~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~ 312 (526) .+.+.+...++++++++.+.+.+...+ ..+|++.|++++-++.+ ..-..|.+..++..++|++++..+.--.+. . T Consensus 209 ~i~~~~~~l~~e~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~-~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~--~ 285 (409) T protein:vir:93 209 FMLKYGSNVGKEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKK-YVSEDIVASENLTRERVANVFQLPSVFLNA--R 285 (409) T ss_pred eEEecCCCCCHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCC-hhHHHHHHHHHHHHHHHHHHhCCCHHHhCC--C Confidence 567788888899988888887765443 46778888887766533 222357777888899999998777544432 2 Q ss_pred cchhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCc--cccCHHHHHHHHHHHHh Q lcl|Aclame:pro 313 GGGAFALGQVHNE-VRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLR--EQADITSMAQSIPALVN 389 (526) Q Consensus 313 ~~gS~a~~~vh~~-v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~--e~edl~~~a~~~~~l~~ 389 (526) +.++++..+.+.. ....-+...++.|+..+|+.|++..-. ... -+|+|+.. ...|.+.+++.+.++++ T Consensus 286 ~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~-------~~~--~~~~fd~~~ll~~d~~~~~~~~~~~~~ 356 (409) T protein:vir:93 286 SNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDR-------EKN--RYFKFNVKSYLRADSATQAEVYFKAVR 356 (409) T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc-------cCc--ceEEeechhhhccCHHHHHHHHHHHHh Confidence 3455555554443 345678888899999999887753210 011 23555443 35689999999999999 Q ss_pred CCCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccc Q lcl|Aclame:pro 390 VGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYG 444 (526) Q Consensus 390 ~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (526) .|+ ++.+++|+.+|+|+-+.++....+... .+.......+.....+....... T Consensus 357 ~G~-~T~NE~R~~~g~~p~~ggD~~~~~~n~-~~~~~~~~~~~~~~gG~~n~~e~ 409 (409) T protein:vir:93 357 SGY-YTINDIREWEDLPPVEGGDKPLISGDL-YPIDTPLELRKSLKGGDKNVNES 409 (409) T ss_pred CCC-cCHHHHHHHhCCCCCCCcCeeeecccc-cccccchhhcccccCCCCCcCCC Confidence 997 999999999999987666655443221 11111111111111111100000 No 62 >protein:vir:9359 Length: 348 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803337;genbank:gi:29028648;genbank:GeneID:1258089 Probab=99.81 E-value=3.2e-19 Score=122.00 Aligned_cols=335 Identities=13% Similarity=0.062 Sum_probs=208.3 Q ss_pred HhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCc Q lcl|Aclame:pro 85 ILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQS 159 (526) Q Consensus 85 v~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~ 159 (526) |.+++|.|.-..+ ..+.... ..|+..| ...++++.+. +.+.+|.+++.++++..| .|..|.+.++. T Consensus 1 ia~lp~~~~~~~~--~~~~~l~----~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G---~~~~L~~l~~~ 71 (348) T protein:vir:93 1 MASLPLKMYEDYK--VVNTEVS----DLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYH---QPSKLFLLNPD 71 (348) T ss_pred CcccceEeEecCc--CcccHHH----HHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCC---cEEEEEEEcCC Confidence 9999999864322 2222333 3444322 2456666665 678899999999875443 36789999998 Q ss_pred eeEecccC-CceEEeccC--CCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEE Q lcl|Aclame:pro 160 WFQLNPED-QNELRLRDN--SPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRL 236 (526) Q Consensus 160 ~f~~~~~~-~~~l~~~~~--~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~v 236 (526) ++++..+. ...+.++.. .+....+++...+++++....+..+|.|.+..+...+-.-. ....|. |..-...|..+ T Consensus 72 ~v~~~~~~~~~~~~y~~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~-~~~~~~-~~~~~~~~~~i 149 (348) T protein:vir:93 72 VVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDN-AVRTFN-LTEMQKPDSFM 149 (348) T ss_pred ceEEEEeCCCcEEEEEEEcCCCeEEEEccccEEEecCCCCCCceeeccHHHHHHHHHHHHH-HHHHHH-HHhcCCCceeE Confidence 77755433 233433332 23344577777666666555677889999888876554433 334443 33323345677 Q ss_pred EecCCCCCHHHHHHHHHHHHHhhcC--eEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccc Q lcl|Aclame:pro 237 GKYPPGTADEEKATLLRAVTGLGHA--AAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGG 314 (526) Q Consensus 237 gk~~~~~~~~e~~~l~~al~~~~~~--~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~ 314 (526) .+++...++++++++.+.+.+...+ ..+++|.|++++-+..+ ..-..|.+..++..++|++++..+..-.+. .+. T Consensus 150 ~~~~~~l~~e~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~-~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~--~~~ 226 (348) T protein:vir:93 150 LKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKK-YVSEDIVASENLTRERVANVFQLPSIFLNA--RSN 226 (348) T ss_pred EecCCCCCHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCC-hhHHHHHHHHHHHHHHHHHHhCCCHHHhCC--CCC Confidence 7888888999998888888776554 45788899887766532 233367888889999999998776544432 234 Q ss_pred hhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecC--ccccCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 315 GAFALGQVHNEV-RHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDL--REQADITSMAQSIPALVNVG 391 (526) Q Consensus 315 gS~a~~~vh~~v-~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~--~e~edl~~~a~~~~~l~~~G 391 (526) ++++..+.+... ...-+.-.++.|+..||+.|++.. +... -.+|+|+. ....|.+++++++.++++.| T Consensus 227 ~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~l~~~~-~~~~--------g~~i~fd~~~l~~~d~~~~a~~~~~~~~~G 297 (348) T protein:vir:93 227 TNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKT-DREK--------NRYFKFNVKSYLRADSATQAEVYFKAVRSG 297 (348) T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc-cccC--------cceEEeechhhhccCHHHHHHHHHHHHhCC Confidence 566665555444 456788888999999998877532 1111 12355543 33568999999999999999 Q ss_pred CcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccc Q lcl|Aclame:pro 392 LEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYG 444 (526) Q Consensus 392 ~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (526) + ++.+++|+.+|+|+-+.++..+.+..-.+. ......+.....+....... T Consensus 298 ~-~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~-~~~~~~~~~~~gg~~n~~~~ 348 (348) T protein:vir:93 298 Y-YTINDIREWEDLPPVEGGDKPLISGDLYPI-DTPLELRKSLKGGDKNVNES 348 (348) T ss_pred C-CCHHHHHHHhCCCCCCCcCeEeeccccccc-ccchhhcccccCCCCCcCCC Confidence 8 999999999999887767665543221111 11111110000010000000 No 63 >protein:vir:3868 Length: 417 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680485;swissprot:trembl:q8ltc2;genbank:gi:22296525;interpro:IPR006427;interpro:IPR006944;uniprot:Q8LTC2;genbank:GeneID:951699 Probab=99.81 E-value=7.3e-19 Score=120.02 Aligned_cols=391 Identities=12% Similarity=0.054 Sum_probs=224.7 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhh-hcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHP-AKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMS 79 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~ 79 (526) |. ++ .+++ ..-.+. |..+. -.++. -...++..... -.+-+.|.+|+. T Consensus 1 m~-~~--~~~~------~~~~~~--------~~~~~~~~~~~--------~~~~g~~~~~~-------Al~~~~V~~cv~ 48 (417) T protein:vir:38 1 MK-LF--RGLA------TEVDPH--------WADHLLDSGVI--------PSFRGGYLGIS-------ALRNSDVLTAVS 48 (417) T ss_pred Cc-cc--cccc------cCCCcc--------chhhhcccccc--------cccCCceechh-------hcccHHHHHHHH Confidence 44 11 0000 000000 10000 00000 01111111100 125678999999 Q ss_pred HHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeee Q lcl|Aclame:pro 80 KRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFH 154 (526) Q Consensus 80 ~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~ 154 (526) .+...|.+++|.+.-.+.+...+ ..-+...|+..| ...++++.++ +.+.+|.++++++.+..+| .|..+. T Consensus 49 ~ia~~iA~lp~~~~~~~~~~~~~---~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~y~~i~r~~~g~--~~~~l~ 123 (417) T protein:vir:38 49 IVSGDVSRFPLVITDSSTDEVID---LANIEYLMNTKVNKRLSAYQWKFPMMVNAILTGNAYSRIVRDPITN--EPAMFE 123 (417) T ss_pred HHHHhhccCeeEEEEcCCcceec---cchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCC--EEEEEE Confidence 99999999999987544322211 112333444333 2445666555 5788999999998755554 456788 Q ss_pred eecCceeEecccCCceEEecc--C-CCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcC Q lcl|Aclame:pro 155 HRPQSWFQLNPEDQNELRLRD--N-SPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYG 231 (526) Q Consensus 155 ~r~~~~f~~~~~~~~~l~~~~--~-~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G 231 (526) +.++.++.+...+...+.++- . +.....+++...|++++.. .+..+|.|.+..+....-.-....++...|....+ T Consensus 124 ~l~p~~v~v~~~~~~~~~y~~~~~~~~~~~~~~~~dviH~r~~~-~d~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~ 202 (417) T protein:vir:38 124 FYAPSQTQVDTSDPDNIIYRFTPYNSSMQKVCGFEDVIHWKFFS-YDTIMGRSPLLSLGDEIGLQESGVSTLQKFFKSGL 202 (417) T ss_pred EeCCceEEEEEcCCCeEEEEEEEcCCcEEEEecCcceEEecCCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccC Confidence 999988877655444444432 2 2223346666666666543 45578999999999888888888999999999989 Q ss_pred CceEEEecCCCCCHHHHHHHHHHHHHhhc----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhc Q lcl|Aclame:pro 232 LPIRLGKYPPGTADEEKATLLRAVTGLGH----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTS 307 (526) Q Consensus 232 ~P~~vgk~~~~~~~~e~~~l~~al~~~~~----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt 307 (526) .|--|.+++...++++++++.+.+.+.-+ +..+|++.|++++-++.+. .-..|.+..++..++|++++..+.-.. T Consensus 203 ~p~~il~~~~~l~~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~-~d~q~le~~~~~~~~Ia~~fgVPp~~l 281 (417) T protein:vir:38 203 KGSIIKAKESRLSAEARQKIREDFERAQAGADAGSPIIVDATMDYQPLEVDT-NVLNLINSNNYSTAQIAKALRVPAYRL 281 (417) T ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHHHhcccccCCceeccCCceEEEccCCH-HHHHHHHHHHhhHHHHHHHhCCCHHHh Confidence 99999999988999998888888776532 3477889999877765432 223477788888999999876654333 Q ss_pred ccccccchhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHH Q lcl|Aclame:pro 308 TTSQSGGGAFALG-QVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPA 386 (526) Q Consensus 308 ~~~~~~~gS~a~~-~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~ 386 (526) + .+ ++++.. +........-+...++.|+..||+.|+.+....+ -.|+|+... .+ ......+++ T Consensus 282 g--~~--~~~s~~e~~~~~~~~~tl~P~~~~ie~~l~~~Ll~~~~~~~----------~~~~fd~~~-l~-~~~~~~~~~ 345 (417) T protein:vir:38 282 A--QN--SPNQSVKQLADDYIRNDLPFYFEPITSEFELKLLDDAQRHQ----------YCIGFDTKS-VN-GLPIADVNT 345 (417) T ss_pred C--CC--CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhhccc----------ceEEechhh-hh-HHHHHHHHH Confidence 2 11 223222 2223334567888888999999988865432211 146676432 22 223445778 Q ss_pred HHhCCCcCCHHHHHHHhCCCCCCccc--hhcccCCC----------ccccccccccccccccccccccccccc Q lcl|Aclame:pro 387 LVNVGLEIPSAWVYDKLGIPQPAKNE--PVLRSAAQ----------PAILSRQHGQRVAALATIVGPRYGDQQ 447 (526) Q Consensus 387 l~~~G~~v~~~~~~e~~Glp~~~~~e--~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (526) +++.|+ ++.+++|+.+|+|+-++++ ....+... .+......+.................. T Consensus 346 ~~~~G~-~T~NE~R~~~gl~pi~~g~~d~~~~~~n~~~~d~~~~~~~~~~~~~kgg~~~~~~~~~~~~~~~~~ 417 (417) T protein:vir:38 346 AVNGGL-WTGNEGRAELGKKPLKDPNMDRIQSTLNTVFLDQKEAYQAEHAAELKGGDTNAKGNQNGSGTNANS 417 (417) T ss_pred HHhCCC-cCHHHHHHHhCCCCCCCCCCCeeeecccccccccccccccccccccCCCCCCCCCCCcCCCCcCCC Confidence 889997 9999999999998755542 22211110 000000001000000000000111111 No 64 >protein:vir:81218 Length: 423 # NCBI annotation: gp3, phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456733;genbank:gi:157168376;interpro:IPR006427;interpro:IPR006944;uniprot:Q9MBK2;genbank:GeneID:5580341 Probab=99.81 E-value=6.7e-19 Score=120.21 Aligned_cols=397 Identities=14% Similarity=0.045 Sum_probs=227.7 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+ +++..|.-. +....+....+.+. +.. +. .+.- .....+++.++.+.|.+|+.. T Consensus 1 Mg-~~~~~~~~~--~~~~~~~~~~~~~~---~~~----~~-------------~~~~--~~~~~~~~~~~~~~v~~~i~~ 55 (423) T protein:vir:81 1 MG-FLQKLGLAP--SVVATPEPIELVGP---IFE----SL-------------KLST--KNMTVEQIWEDQPHLRTVTTF 55 (423) T ss_pred Cc-hhHhhcccc--ccccCccccccccc---ccc----cc-------------cccc--chhhHHHHHHhhhHHHHHHHH Confidence 87 777765311 11111111111111 000 00 0000 011223334478999999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeee Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHH 155 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~ 155 (526) +-..|.+++|.|.-...+...++....-+..++.+ | ...++++.++ +.+.+|-+++.+..+. ++...+..+.+ T Consensus 56 ia~~ia~lp~~~~~~~~dg~~~~~~~~~~~~ll~~-PN~~~t~~~f~~~~~~~l~l~Gna~~~i~rd~-~~~~~~~~l~p 133 (423) T protein:vir:81 56 IARNVASLQLQAFERVEDGGRERVREGHLARVCKL-ANSDMTMYDLLERTMFDLCLYDEFFWLLPGDL-GVDTPTLDIRP 133 (423) T ss_pred HHHhHhhCceEEEEEecCCceeeeccchHHHHhhc-CCCCCCHHHHHHHHHHHHhhcCCeEEEEEecC-CcCcceEEEee Confidence 99999999998843221111111111122233332 3 2456666555 5778998888775432 32333345666 Q ss_pred ecCceeEecc--cCCceEEec---cCCCCc--eeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 156 RPQSWFQLNP--EDQNELRLR---DNSPAG--EALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLE 228 (526) Q Consensus 156 r~~~~f~~~~--~~~~~l~~~---~~~~~g--~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E 228 (526) .+..++.... ++...+.++ .....| ..+++...|+.+.....+..+|.|.+..+....-.-....++...|.. T Consensus 134 ~~~~~v~~~~~~~~~~~~~Y~~~~~~~~~g~~~~~~~~evih~r~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ 213 (423) T protein:vir:81 134 IPVSWVQRRAYKDGWGSLDYIIIESGDNDGRSVKVPGERVIHRHGYNPKTMKRGKSPVQSLRDILGEQIEAAIFRAQMWR 213 (423) T ss_pred cccceeeeeeccCCCcceEEEEEEecCCCceEEEEcccceEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHh Confidence 6666554322 222233222 112223 456777655544444455557999999999888888888888889998 Q ss_pred HcCCceEEEecCC-----CCCHHHHHHHHHHHHHhh----c--CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHH Q lcl|Aclame:pro 229 IYGLPIRLGKYPP-----GTADEEKATLLRAVTGLG----H--AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAIS 297 (526) Q Consensus 229 ~~G~P~~vgk~~~-----~~~~~e~~~l~~al~~~~----~--~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Is 297 (526) .-+.|--|.+++. ..++++++.+.+.+...- . +..+|++.|++++-+..+. .-..|.+..++...+|+ T Consensus 214 ng~~p~gvi~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~s~-~d~q~~e~~~~~~~eIa 292 (423) T protein:vir:81 214 NGPRPGMVIMRDPESKAGKWDAESRTRFMANLRASFSPKSSDVGGTLLLEDGMKAENFHTTS-KDEQTVETTKLSLQTVA 292 (423) T ss_pred ccCCCceEEEecCcccCccCCHHHHHHHHHHHHHHhccccccCCcceecCCCceEEeccCCh-hhHHHHHHHHhhHHHHH Confidence 8888988877654 346777888877776542 1 2467889998877665432 22246677788999999 Q ss_pred HHHhchhhhcccccccchhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccC Q lcl|Aclame:pro 298 KAVLGGTLTSTTSQSGGGAFALGQVHNE-VRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQAD 376 (526) Q Consensus 298 k~ilGqtltt~~~~~~~gS~a~~~vh~~-v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~ed 376 (526) +++..+.--.+. .+.++++..+-... ....-+...++.|++.||+.|+++.-.-+ ...+-+|.++.....| T Consensus 293 ~~fgVPp~~lg~--~~~~t~sn~e~~~~~f~~~~L~P~~~~ie~~l~~~L~~~~~~~~------~~~~~~fd~~~llr~d 364 (423) T protein:vir:81 293 QVYGINPTMVGQ--LDNANYSNVREFRKALYGDNLGSWIRIIQDVMNLFLLPRVGIDN------EKFYFEFNLEEKLRAS 364 (423) T ss_pred HHhCCCHHHhcC--CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccc------CccEEEecchhhhccC Confidence 998766433322 22355554444433 34456788889999999998876532111 1112233333445578 Q ss_pred HHHHHHHHHHHH-hCCCcCCHHHHHHHhCCCCCCccchhcccCCCccc-cccccccccccccccccccccc Q lcl|Aclame:pro 377 ITSMAQSIPALV-NVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAI-LSRQHGQRVAALATIVGPRYGD 445 (526) Q Consensus 377 l~~~a~~~~~l~-~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 445 (526) ++++++.+.+++ +.|+ ++.+++|+.+|+|+.+.+++...+...... .+..++.+.. . T Consensus 365 ~~~r~~~~~~~l~~~G~-~T~NE~R~~~gl~p~~gGD~~~~p~n~~~~~~~~~~~~~~~-----------t 423 (423) T protein:vir:81 365 FEEAAEIKRAAVGNVAW-MTINEVRAMDNLPSIDGGDDLARPLNTEFGDSEDAPGEEVE-----------T 423 (423) T ss_pred HHHHHHHHHHHHhCCCC-cCHHHHHHHhCCCCCCCcceeecccccccCccCCCCCCCCC-----------C Confidence 999999999876 5676 899999999999987777776644321110 0000000000 0 No 65 >protein:vir:100187 Length: 385 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025029;genbank:gi:48697262;genbank:GeneID:2948285 Probab=99.81 E-value=7.9e-19 Score=119.82 Aligned_cols=373 Identities=11% Similarity=-0.007 Sum_probs=220.0 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+ |.+..+.... ..+..... ....+......+. .+.. +..+-..+.+.|.+|+.. T Consensus 1 Mg-~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~-------------~~~~-----v~~~~al~~~~v~~~i~~ 55 (385) T protein:vir:10 1 MG-LLTPRNFNKR--KAKNMVYP----SNPAFFTTTVGGM-------------QLSY-----VSALSALQNTNVYSVINR 55 (385) T ss_pred Cc-cccchhcccc--cccccccc----cchhhhhhhcccc-------------Cccc-----cCHHHhhccHHHHHHHHH Confidence 88 6665432211 11111010 0001111110010 0100 001111257889999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCc Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQS 159 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~ 159 (526) +-..+.+++|+|.... ...++++. +......++++.+. +.+.+|.++++++++ . ..+.+.++. T Consensus 56 ia~~ia~~p~~v~~~~--------~~~ll~~P-N~~~t~~~f~~~~~~~l~l~Gn~~~~i~r~--~-----~~~~p~~~~ 119 (385) T protein:vir:10 56 IASDVASAHFKTENTA--------TLNRLESP-SSLIGRFSFWQGALMQLCLSGNDYIPLVGQ--N-----LEHIPNSDV 119 (385) T ss_pred HHHHHhhCceeeeccc--------hhhhhhcC-CCCCCHHHHHHHHHHHhhhcCCeEEEEEcC--c-----eeEeecCCc Confidence 9999999999996211 11222211 11113556666666 566799999998753 1 124445555 Q ss_pred eeEecccCCceEEecc--CCCCceeecCCCeEEEeecCC--CCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceE Q lcl|Aclame:pro 160 WFQLNPEDQNELRLRD--NSPAGEALQPFGWIIHRPRAR--SGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIR 235 (526) Q Consensus 160 ~f~~~~~~~~~l~~~~--~~~~g~~lp~~k~i~~~~~~~--~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~ 235 (526) .+....+....+.... .+.....+++...+++++... .+..+|.|.+..+....-......++...|...-+.|-- T Consensus 120 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~eiihik~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~g 199 (385) T protein:vir:10 120 QINYLPGNMGIVYTVLESNDRPQMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAG 199 (385) T ss_pred eEEEEEcCCceEEEEEEcCCceEEEEccccEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcce Confidence 5555444443333222 233345678877666654322 345689999999999999888999999999999999999 Q ss_pred EEecCCCC-CHHHHHHHHHHHHHhhc----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccc Q lcl|Aclame:pro 236 LGKYPPGT-ADEEKATLLRAVTGLGH----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTS 310 (526) Q Consensus 236 vgk~~~~~-~~~e~~~l~~al~~~~~----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~ 310 (526) +.+++... ++++++.+.+.+.++.+ ...+++|.|++++-++.+........+..++..++|++++..+.--.+.. T Consensus 200 il~~~~~~~~~e~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~ 279 (385) T protein:vir:10 200 KLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGG 279 (385) T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHhCccccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCc Confidence 99998655 46678888777777643 24688999998887764432223234677888999999987665444333 Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhC Q lcl|Aclame:pro 311 QSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNV 390 (526) Q Consensus 311 ~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~ 390 (526) +++.++++..+........-+...++.|+..||+.|+. + .-+|.+...-..|.+++++.+.++++. T Consensus 280 ~~~~~~~sn~eq~~~~~~~~l~P~~~~ie~~l~~~l~~--------~------~~~f~~~~ll~~d~~~~~~~~~~~~~~ 345 (385) T protein:vir:10 280 TSTESQHSNIDQIKATYLANLNSYVNPIVDELRLKMNA--------P------DLELDIKDMLDVDDSALINQVSNLAKS 345 (385) T ss_pred cCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--------c------eEEeechhhhccCHHHHHHHHHHHHhC Confidence 33333444444444445556778888899999876531 1 123434444457899999999999999 Q ss_pred CCcCCHHHHHHHhCCCCCCc--cchhcccCCCcccccccccccccccccccccccccccchHH Q lcl|Aclame:pro 391 GLEIPSAWVYDKLGIPQPAK--NEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDK 451 (526) Q Consensus 391 G~~v~~~~~~e~~Glp~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (526) |+ ++.+++|+.+|+++-.. .+.+..+......... -++ T Consensus 346 G~-~T~NE~R~~~g~~p~p~~~~~~~~~~~~~~~~g~~----------------------~dn 385 (385) T protein:vir:10 346 GV-LGAEQAQFILTRSGFLPDNLPEFKPLTTQVKGGDE----------------------GDN 385 (385) T ss_pred CC-cCHHHHHHHhCCCccCCCCCccccCcccccCCCCC----------------------CCC Confidence 98 99999999998864322 1222111111000000 000 No 66 >protein:vir:80644 Length: 551 # NCBI annotation: gp23 # Family: family:all:2446 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468463;genbank:gi:157325038;genbank:GeneID:5601615 Probab=99.81 E-value=3.5e-18 Score=116.27 Aligned_cols=452 Identities=9% Similarity=0.026 Sum_probs=226.5 Q ss_pred CC-------------eeecCCCC----ccCccccchhh--hhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCH---H Q lcl|Aclame:pro 1 MA-------------QIVDVYGN----PIRTQQLREPQ--TSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNL---Q 58 (526) Q Consensus 1 m~-------------~~~~~~g~----p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~---~ 58 (526) |+ .++.+.-. -|.....++.. .+. .+-.+.+......++..+ ...+ ..+.+ . T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-~~~~~a~~~~~~~~~~~~---~~~~--~r~~~~~~~ 78 (551) T protein:vir:80 5 LGLFESIRLVGVNKSDAVKHIEVDDNYSIAIQQREQEQISKAM-NNKEVAYSQPVIGSMSAN---PGFK--TKPSIRNNQ 78 (551) T ss_pred hhhHHHhhhccCChhhcccccccccceeeecccccHHHHHHhh-ccCcceeecccccceecC---cccc--cCccccChh Confidence 22 22221111 01111111100 000 000001000000000000 0000 01111 1 Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhc-----------CCceEecCCC---CCHHHHHHHHHHHHHHhc----C---- Q lcl|Aclame:pro 59 AQAELFMDMEERDAHLFAEMSKRKRAILG-----------LDWAVEPPRN---ASAAEKADADYLHELLLD----L---- 116 (526) Q Consensus 59 ~~~~l~~~m~~~D~~v~s~l~~Rk~av~~-----------~~w~v~~~~~---~~~~~~~~a~~v~~~l~~----~---- 116 (526) ....+.+- ..+-+.|.+|+..|...|.+ .+|.|.+... ....+......++++|.+ + T Consensus 79 ~l~~~~~~-~~~npiv~~~I~~ia~~IA~~~~~~~~~~~g~~~~i~~kd~~~~~~~~~~~~~~~i~~~l~~pn~~~~p~~ 157 (551) T protein:vir:80 79 DLHGVLKK-FGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINR 157 (551) T ss_pred HHHHHHHH-hhcCHHHHHHHHHHHHHHhhhhhhhhhhcCCCCceEEecccCcccChhHHHHHHHHHHHHHhcCCCCCCcc Confidence 11122211 22468899999999999975 5666655331 122333333334444432 1 Q ss_pred cCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCceeEecccCCce-------EEeccCCCCceeecCCCe Q lcl|Aclame:pro 117 EGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQSWFQLNPEDQNE-------LRLRDNSPAGEALQPFGW 188 (526) Q Consensus 117 ~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~~~~~~~~-------l~~~~~~~~g~~lp~~k~ 188 (526) ..|.+++..++ +.+.+|.+++|++++..| .|..|.+.++.++++..+..+. +....++.....+++... T Consensus 158 ~s~~~f~~~lv~dlll~Gnay~~i~rd~~G---~~~~L~~l~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~~ei 234 (551) T protein:vir:80 158 DSFSSFVKKIVRDTYMYDQVNFEKVFNRNQ---SMVRFVAKDPTTIFFATTADGKIPDNGNRFVQVIDQKIVATFNAREM 234 (551) T ss_pred chHHHHHHHHHHHHHhcCCEEEEEEECCCC---cEEEEEEeCCceeEEEECCccccccCceEEEEEeCCcEEEEEcccce Confidence 13567777766 578899999999986654 3778999999988765443321 222223333446777777 Q ss_pred EEEeecCCC---CccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecC--CCCCHHHHHHHHHHHHHhh---c Q lcl|Aclame:pro 189 IIHRPRARS---GYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYP--PGTADEEKATLLRAVTGLG---H 260 (526) Q Consensus 189 i~~~~~~~~---g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~--~~~~~~e~~~l~~al~~~~---~ 260 (526) |++++...+ ..+||.|.+..+......-....++-..|....+.|--+.+++ ...++++++.+.+.+.+.- . T Consensus 235 iH~~~n~~~~~~~~~~G~spi~~a~~~i~~~~a~~~~~~~~f~Ng~~p~giL~~~~~~~lt~e~~~~lk~~~~~~~~G~~ 314 (551) T protein:vir:80 235 AFAVRNPRSDIYATGYGYPELEIALKQFIAHENTEAFNDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGIN 314 (551) T ss_pred EEecccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEcCCCCCCHHHHHHHHHHHHHHhcCcc Confidence 666654433 3568999999999999888888999999999999997666654 3467888888888776652 2 Q ss_pred CeE--EEe-cCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhccc--------ccccchhhhhhHHHH-HHHH Q lcl|Aclame:pro 261 AAA--GII-PETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTT--------SQSGGGAFALGQVHN-EVRH 328 (526) Q Consensus 261 ~~~--~ii-p~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~--------~~~~~gS~a~~~vh~-~v~~ 328 (526) +++ .|+ +.|++++-+..+ ..-..|.+..++..++|++++..+..-.+. ..++.-+++..+... .... T Consensus 315 nag~~~vl~~~g~~~~~l~~~-~~D~qfle~~~~~~~~Ia~aFgVPp~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~f~~ 393 (551) T protein:vir:80 315 GSWQIPVVSAEDVKFVNMTPS-ARDMEFEKWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKN 393 (551) T ss_pred ccCccccccCCCceEEEccCC-hhHHHHHHHHHHHHHHHHHHhcCCHHHcCcccccccccccccccchhhHHHHHHHHHH Confidence 332 344 456665555422 223358888899999999997554322211 001111233333333 3355 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCC Q lcl|Aclame:pro 329 DLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQP 408 (526) Q Consensus 329 ~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~ 408 (526) ..+...++.|+..||+.|++.+ +. .-+|.|+.....+....++.. +++..|+ ++.+++|+++|+|+. T Consensus 394 ~tL~P~~~~ie~~ln~~L~~~~-----~~------~~~f~f~~~~~~~~~~~~~~~-~~~~~g~-lT~NE~R~~~gl~P~ 460 (551) T protein:vir:80 394 KGLQPLLGFIEDFINKHIVAEF-----GD------KYTFQFVGGDIKSELESVKIL-AEKAKVA-MTVNEVRKELNLPGD 460 (551) T ss_pred HHHHHHHHHHHHHHHhhhcccc-----CC------ceEEEeeccChhhHHHHHHHH-HHHhcCC-cCHHHHHHHhCCCCC Confidence 6788899999999998876532 11 125777766666766666654 4556687 899999999999763 Q ss_pred -CccchhcccCCCc--------cccc--c----------ccccccccccccccccccccc--chHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 409 -AKNEPVLRSAAQP--------AILS--R----------QHGQRVAALATIVGPRYGDQQ--ALDKALADLPAKDMQNQA 465 (526) Q Consensus 409 -~~~e~~~~~~~~~--------~~~~--~----------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 465 (526) +.++..+.+...+ ...+ . ..+..........+...+.+. ..+..+.+....... T Consensus 461 ~egGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--- 537 (551) T protein:vir:80 461 VIGGDIPLNGVIVQRIGQLMQQEQFEHEKQQSNLQMLQEQTGNRVSTDVEDIPDGKDTTGDIGKDGQRKDKDNANAG--- 537 (551) T ss_pred CCCCceeecccccccccccccccCcchhhhhhccccccCcCCCCCCCCCCCCCCccccCCCccccccccCccccchh--- Confidence 4445443211100 0000 0 000000000000000000000 011111111111111 Q ss_pred HHHHHHHHHHHHhcCCHHHHHH Q lcl|Aclame:pro 466 NDLLAPLLEAVNRGDSETELLG 487 (526) Q Consensus 466 ~~~~~~i~~~~~~a~s~ee~~~ 487 (526) +... .+.-+++... T Consensus 538 ~~~~--------~~~~~~~~~~ 551 (551) T protein:vir:80 538 KQGM--------KGDKPNDWQT 551 (551) T ss_pred hhhc--------CCCCccccCC Confidence 0000 1111111111 No 67 >protein:vir:4952 Length: 386 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049928;genbank:gi:9632899;genbank:GeneID:1262075 Probab=99.79 E-value=2.2e-18 Score=117.43 Aligned_cols=376 Identities=10% Similarity=0.037 Sum_probs=219.7 Q ss_pred CCeeecCCCCccCccccchhhhh-hhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTS-RLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMS 79 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~ 79 (526) |+ |.+..-+ +..+...+. ........ +.. .. .. .|. .+......+-+.|.+|+. T Consensus 1 M~-~f~~~~~----~~~~~~~~~~~~~~~~~~-------~~~-~~----~~---~~~-----~v~~~~al~~~~v~~~i~ 55 (386) T protein:vir:49 1 MP-IFNITNL----ATESPPINQESFFDIADS-------DFL-AS----LN---SSE-----WVSAENALKNSDLFSIIS 55 (386) T ss_pred Cc-hhhhhcc----CCCCcccchhhhhhhhhc-------ccc-cc----cc---CCc-----eechhhhhccHHHHHHHH Confidence 77 4333211 000000110 00000000 000 00 00 010 011111125788999999 Q ss_pred HHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecC Q lcl|Aclame:pro 80 KRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQ 158 (526) Q Consensus 80 ~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~ 158 (526) .+...|.++++.+.... ...++... +......++++.++ +.+.+|.+++++++...+ .+..+.+.++ T Consensus 56 ~ia~~ia~~p~~~~~~~--------~~~l~~~P-N~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g---~~~~l~~i~~ 123 (386) T protein:vir:49 56 QLSNDLATAKITTSRKQ--------LQGIVDNP-SNNANRFNFYQSIFAQMLLGGEAFAYRWRNDNG---RDMKWEYLRP 123 (386) T ss_pred HHHHHhhhCceeeccch--------hhhhhhcc-CCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCC---cEEEEEEecC Confidence 99999999999987321 11111221 11123567777776 567799999999986543 3668999999 Q ss_pred ceeEecccCC-ceEEe--ccC---CCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCC Q lcl|Aclame:pro 159 SWFQLNPEDQ-NELRL--RDN---SPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGL 232 (526) Q Consensus 159 ~~f~~~~~~~-~~l~~--~~~---~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~ 232 (526) .++++..... ..+.+ ... ......++....+++++....+..+|.|.+..+....-.-....++...+....++ T Consensus 124 ~~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~ 203 (386) T protein:vir:49 124 SQVSFNRLDNQNGLYYNITFDDPHIAPKQHVPQNDILHFRLLSVDGGLTSVSPLMALGREFNIQKASDKLTISALKNALN 203 (386) T ss_pred ceeEEEEcCCCceEEEEEEEcCccccceeEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHccCC Confidence 8877655432 22322 211 22234577777666665555666899999999999999888999999999999999 Q ss_pred ceEEEecCCCCCHHHHHHHHHHHHHhhcC--eEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccc Q lcl|Aclame:pro 233 PIRLGKYPPGTADEEKATLLRAVTGLGHA--AAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTS 310 (526) Q Consensus 233 P~~vgk~~~~~~~~e~~~l~~al~~~~~~--~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~ 310 (526) |--+.+++...+++++..+.++...+..+ ..+++|.|++++-++.+ .....|.+..++...+|+++...+.--.+. T Consensus 204 ~~~il~~~~~~~~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~-~~d~~~~e~~~~~~~~Ia~~fgVPp~~lg~- 281 (386) T protein:vir:49 204 ANGILKIKGGGLLDFKTKVSRSRQAMKQMQGGPLVLDDLEDFTPLEIK-SNVAQLLSQADWTTGQFAKVYGIPESIVGG- 281 (386) T ss_pred ccEEEEeCCCCChHHHHHHHHHHHHhccCCCCceecCCCceEEEccCC-hhHHHHHHHHHHHHHHHHHHhCCCHHHhCC- Confidence 99999999988888888888877777665 45777888877666532 233457788899999999998666433321 Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhC Q lcl|Aclame:pro 311 QSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNV 390 (526) Q Consensus 311 ~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~ 390 (526) + ..+++.++.........+.--++.++..||+.|...+ .|........|...++..+.+|+.. T Consensus 282 ~--~~~~~~~~~~~~~~~~~i~~~l~~i~~~~~~~l~~~~---------------~~~~~~~~~~d~~~~~~~~~~l~~~ 344 (386) T protein:vir:49 282 D--GDQQSSLEMIYNIYFKSVSRYLRPFVSEMSKKLSCEV---------------DVDISPAVDPTGSNYISLINSMVKS 344 (386) T ss_pred C--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh---------------cccchhhhccCHHHHHHHHHHHHhC Confidence 1 2233333433444455666677777777776653221 1222223345777889999999999 Q ss_pred CCcCCHHHHHHHhCCCCCCccchhcccCCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 391 GLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQ 447 (526) Q Consensus 391 G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (526) |+ ++.+++|+.++-..-...+ +..... +..++. .......++ T Consensus 345 g~-~t~nE~r~~l~~~~~~~~~-~~~~~~-~~~~~~------------~gGd~~~~~ 386 (386) T protein:vir:49 345 GT-LAQNQGLYILQQAEILPKE-LPDGKN-PNRTSL------------KGGEINEQD 386 (386) T ss_pred CC-cCHHHHHHHHhhCCCCCCc-Ccchhc-cCCCCC------------CCCCCCCCC Confidence 98 8999999988632211111 110000 000000 000000111 No 68 >protein:vir:100882 Length: 383 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Probab=99.79 E-value=4e-18 Score=115.95 Aligned_cols=372 Identities=11% Similarity=0.007 Sum_probs=219.1 Q ss_pred CCeeecCCC-CccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYG-NPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMS 79 (526) Q Consensus 1 m~~~~~~~g-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~ 79 (526) |+ |++... .....+.. .... ...+. ..+-....+.... .+ .. .+-+.|.+|+. T Consensus 1 Mg-~~~~~~~~k~~~~~~---~~~~----~~~~~-------------~~~~~~~~~~~v~-~~---~~-l~~~~v~~~i~ 54 (383) T protein:vir:10 1 MG-LLTPKNFSKRNAKNM---VYPS----NPAFF-------------TTTVGGMQLSYVS-AL---SA-LQNTNVYSVIN 54 (383) T ss_pred CC-ccccccccccccccc---cccc----chhhh-------------hhhccCccccccc-hh---Hh-hcchHHHHHHH Confidence 88 566531 11111100 0000 00000 0000111111100 00 11 14677999999 Q ss_pred HHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecC Q lcl|Aclame:pro 80 KRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQ 158 (526) Q Consensus 80 ~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~ 158 (526) .+-..+.+++|+|.-.. ...+++.. +......++++.+. +.+.+|.++++++-+ . ..+.+.++ T Consensus 55 ~ia~~ia~~~~~~~~~~--------~~~ll~~P-N~~~t~~~f~~~~~~~l~l~Gn~~~~i~~~--~-----~~~~p~~~ 118 (383) T protein:vir:10 55 RIASDVSSAHFKTENTA--------TLNRLESP-SSLIGRFSFWQGALMQLCLSGNDYIPLVGQ--N-----LEHIPNSD 118 (383) T ss_pred HHHHhhccCceeecccc--------hhhhhhCC-CCCCCHHHHHHHHHHHhhhcCCeEEEEEcC--c-----eeEeecCc Confidence 99999999999986211 11222211 11113556666655 466799999998532 1 12344444 Q ss_pred ceeEecccCCceEEecc--CCCCceeecCCCeEEEeecCC--CCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCce Q lcl|Aclame:pro 159 SWFQLNPEDQNELRLRD--NSPAGEALQPFGWIIHRPRAR--SGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPI 234 (526) Q Consensus 159 ~~f~~~~~~~~~l~~~~--~~~~g~~lp~~k~i~~~~~~~--~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~ 234 (526) .++++..+....+.... .......+++...+++++... .+..+|.|.+..+....-.-....++...|....+.|- T Consensus 119 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~evih~r~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~~~ 198 (383) T protein:vir:10 119 VQINYLPGNMGIVYTVLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPA 198 (383) T ss_pred ceEEEEEcCCceEEEEEEcCCceEEEEcccceEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcc Confidence 45555444444333222 223345577777666554322 33468999999999999988999999999999999999 Q ss_pred EEEecCCCC-CHHHHHHHHHHHHHhhc----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhccc Q lcl|Aclame:pro 235 RLGKYPPGT-ADEEKATLLRAVTGLGH----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTT 309 (526) Q Consensus 235 ~vgk~~~~~-~~~e~~~l~~al~~~~~----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~ 309 (526) -+.+++... ++++++.+.+.+.+..+ ...++++.|++++-++.+........++.++..++|++++..+.--.+. T Consensus 199 ~il~~~~~~~~~e~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~afgVPp~~lg~ 278 (383) T protein:vir:10 199 GKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGG 278 (383) T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHHhCccccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCC Confidence 999998665 46677777777776632 2468889999988876443333333577888899999998766533332 Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHh Q lcl|Aclame:pro 310 SQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVN 389 (526) Q Consensus 310 ~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~ 389 (526) .+++..+++..+.+...+..-+.-.++.|+..+|+.|. ++ .-+|.+......|.+..++++.++++ T Consensus 279 ~~~~~~~~sn~eq~~~~~~~~l~P~~~~ie~~l~~~l~--------~~------~~~f~~~~l~~~d~~~~~~~~~~~~~ 344 (383) T protein:vir:10 279 GTSTESQHSNIDQIKATYLANLNSYVNPIVDELRLKMN--------AP------DLELDIKDMLDVDDSILINQVSNLAK 344 (383) T ss_pred ccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhC--------Cc------eEEeechhhhccCHHHHHHHHHHHHh Confidence 23223334444444555556777888888888887652 11 12344444446799999999999999 Q ss_pred CCCcCCHHHHHHHhCCCCCCccchhcccCCCccccccccccccccccccccc Q lcl|Aclame:pro 390 VGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGP 441 (526) Q Consensus 390 ~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (526) .|+ ++.+++|+.+|+|+-..++........ . +...+. .+ T Consensus 345 ~G~-~t~nE~R~~lg~~p~~~~d~~~~~~~~-~--~~~gGd---------~e 383 (383) T protein:vir:10 345 SGV-LGAEQAQFILTRSGFLPDNLPEFKPLT-N--ETKGGD---------DK 383 (383) T ss_pred CCC-cCHHHHHHHhCCCcccCCcccccCCCc-c--cCCCCC---------CC Confidence 998 999999999999765554432111110 0 000000 00 No 69 >protein:vir:63755 Length: 547 # NCBI annotation: gp14 # Family: family:all:2446 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547619;genbank:GeneID:3783506 Probab=99.79 E-value=3.5e-17 Score=110.79 Aligned_cols=450 Identities=8% Similarity=0.017 Sum_probs=227.3 Q ss_pred CCeeecCCCCccCccccchhhh-hhh--h--hhhhhhhh------hhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHh Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQT-SRL--A--GLAKEFAQ------HPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEE 69 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~-~~~--~--~~~~~~~~------~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~ 69 (526) ++.++++.+.--+.+...+... .++ + .....+.. ....|..+.+ ..+. -.+++.....| . T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~--~~~l~~l~~~~----~ 84 (547) T protein:vir:63 14 KSDAVKHIEVDDNYSIAIQQREQEQISKAMNNKEVAYSQPVIGSMSANPGFKTKP---SIRN--NQDLHGVLKKF----G 84 (547) T ss_pred ccccccccccccccchhhhhhhHHHHHHhhcccchhhhchhhheeecccccccCC---ccCC--hhHHHHHHHHh----h Confidence 4444444443211111100100 000 0 00000000 0000111000 0000 00122222222 2 Q ss_pred ccHHHHHHHHHHHHHHhc-----------CCceEecCC---CCCHHHHHHHHHHHHHHhc----C----cCHHHHHHHHH Q lcl|Aclame:pro 70 RDAHLFAEMSKRKRAILG-----------LDWAVEPPR---NASAAEKADADYLHELLLD----L----EGLEDLLLDAL 127 (526) Q Consensus 70 ~D~~v~s~l~~Rk~av~~-----------~~w~v~~~~---~~~~~~~~~a~~v~~~l~~----~----~~~~~~i~~~l 127 (526) .-+.|.+|+..++..|.+ ..|.|.+.. .....++.....++++|.+ + ..|.+++..++ T Consensus 85 ~npiv~~~I~~~a~~ia~~~~~~~~~~~~~~~~ir~k~~~~~~~~~~~~~~~~l~~~l~~pn~~~~p~~~s~~~f~~~lv 164 (547) T protein:vir:63 85 GNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSFSSFVKKIV 164 (547) T ss_pred cCHHHHHHHHHHHHHHhhhhhhhhhhccCCCceeEecccccccChhhHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHH Confidence 468899999999988874 345554432 1122333333344444432 2 13567777776 Q ss_pred -HhhhhcceeeeEEEeecCCeeEEeeeeeecCceeEecccCCce-------EEeccCCCCceeecCCCeEEEeecCCCC- Q lcl|Aclame:pro 128 -DGIGHGYSCIELEWALQGREWMPLAFHHRPQSWFQLNPEDQNE-------LRLRDNSPAGEALQPFGWIIHRPRARSG- 198 (526) Q Consensus 128 -da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~~~~~~~~-------l~~~~~~~~g~~lp~~k~i~~~~~~~~g- 198 (526) +.+.+|.+++|++|+..| .|..|.+.++.++++....... +....++.....+++...|++++...++ T Consensus 165 ~d~ll~Gn~~~~i~rd~~G---~~~~L~~l~p~~V~~~~~~~g~~~~~~~~y~~~~~~~~~~~~~~~eiih~r~n~~~~~ 241 (547) T protein:vir:63 165 RDTYMYDQVNFEKVFNRNQ---SMVRFVAKDPTTIFFATTADGKIPDNGNRFVQVIDQKIVATFNAREMAFAVRNPRSDI 241 (547) T ss_pred HHHHhhCCEEEEEEECCCC---cEEEEEEecCceeEEEECCccccccCceEEEEEcCCcEEEEeccccEEEecccCCCCc Confidence 578899999999987654 3678999999888765433321 2222233334467777776666554433 Q ss_pred --ccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecC--CCCCHHHHHHHHHHHHHhh---cCeE--EEe-cC Q lcl|Aclame:pro 199 --YVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYP--PGTADEEKATLLRAVTGLG---HAAA--GII-PE 268 (526) Q Consensus 199 --~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~--~~~~~~e~~~l~~al~~~~---~~~~--~ii-p~ 268 (526) .+||.|.+..+......-....++...|.+..+.|--+.+++ ...++++++.+.+.+.+.- .+++ .|+ +. T Consensus 242 ~~~~~G~Spi~~~~~~i~~~~~a~~~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lk~~~~~~~~G~~nagk~~vl~~~ 321 (547) T protein:vir:63 242 YATGYGYPELEIALKQFIAHENTEAFNDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQIPVVSAE 321 (547) T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhcCcccccccccccCC Confidence 568999999999999989999999999999999997666654 3467888888888776642 2332 233 35 Q ss_pred CceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhccc--------ccccchhhhhhHHHH-HHHHHHHHHHHHHHH Q lcl|Aclame:pro 269 TMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTT--------SQSGGGAFALGQVHN-EVRHDLLASDARQLA 339 (526) Q Consensus 269 ~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~--------~~~~~gS~a~~~vh~-~v~~~~~~ad~~~i~ 339 (526) |++++-+.. +..-..|.+..++..++|+.++..+..-.+. ..++.-+++..+... ......+...++.|+ T Consensus 322 g~~~~~l~~-~~~d~qfle~~~~~~~~Ia~afgVPP~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~~~~~tL~P~~~~ie 400 (547) T protein:vir:63 322 DVKFVNMTP-SARDMEFEKWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGFIE 400 (547) T ss_pred CceEEEcCC-ChhHHHHHHHHHHHHHHHHHHhCCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHH Confidence 555544432 2222357888888999999998655322211 001111233233222 335567888999999 Q ss_pred HHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCC-CccchhcccC Q lcl|Aclame:pro 340 ATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQP-AKNEPVLRSA 418 (526) Q Consensus 340 ~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~-~~~e~~~~~~ 418 (526) ..||+.|++.+ +. .-+|.|+.....+....++.. +++..|+ ++.+++|+++|+|+. +.++.++.+. T Consensus 401 ~~ln~~L~~~~-----~~------~~~~~f~~~~~~~~~~~~~~~-~~~~~g~-lT~NE~R~~~gl~P~~egGD~~~~~~ 467 (547) T protein:vir:63 401 DFINKHIVAEF-----GD------KYTFQFVGGDIKSELESVKIL-AEKAKVA-MTVNEVRKELNLPGDVIGGDIPLNGV 467 (547) T ss_pred HHHHhhccccc-----CC------ceEEEeeccccccHHHHHHHH-HHHhCCC-cCHHHHHHHhCCCCCCCCCceeeccc Confidence 99998876532 11 125777777667766666544 4666787 899999999999763 4444433211 Q ss_pred CCc--------ccc--cc------cccccccccccccccccc----ccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 419 AQP--------AIL--SR------QHGQRVAALATIVGPRYG----DQQ--ALDKALADLPAKDMQNQANDLLAPLLEAV 476 (526) Q Consensus 419 ~~~--------~~~--~~------~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 476 (526) ..+ ... .. ......+.......+..+ .+. ..|....+....+... ... T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~------- 537 (547) T protein:vir:63 468 IVQRIGQLMQQEQFEHEKQQSNLQMLQEQTGNRVSTDVEDIPDGKDTTGDIGKDGQRKDKDNANAGK---QGM------- 537 (547) T ss_pred ccccccccccccCCccccchhhccccccccCCCCCCCCCCCCCCcccCCCcCccccccCccccchhh---hhc------- Confidence 000 000 00 000000000000000000 000 0111111111111110 000 Q ss_pred HhcCCHHHHHH Q lcl|Aclame:pro 477 NRGDSETELLG 487 (526) Q Consensus 477 ~~a~s~ee~~~ 487 (526) .+.-+++... T Consensus 538 -~~~~~~~~~~ 547 (547) T protein:vir:63 538 -KGDKPNDWQT 547 (547) T ss_pred -CCCCccccCC Confidence 1111111111 No 70 >protein:vir:99452 Length: 651 # NCBI annotation: hypothetical protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919077;genbank:gi:119757035;genbank:GeneID:4606105 Probab=99.78 E-value=5.6e-18 Score=115.16 Aligned_cols=451 Identities=12% Similarity=0.080 Sum_probs=233.8 Q ss_pred CCeeecCCCCccCccccc------------hhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLR------------EPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDME 68 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~ 68 (526) |+ |.-|+. +-..++ .+.+..+..- +.. -.+++-+. +- ++..+. .|. T Consensus 1 ~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~p--------~~--~~~~L~----~~~ 58 (651) T protein:vir:99 1 MT---DTTGET-QETKVHVEGLGGEADLAKSPNSTQIPDH-RIQ---SHNVGVNP--------PY--NPDRLA----AFL 58 (651) T ss_pred CC---Ccccee-eeeEEEeecccccccccccccccccchh-hhc---ccCCCCCC--------CC--CHHHHH----HHH Confidence 66 555542 211111 1111111100 000 00111000 00 233333 334 Q ss_pred hccHHHHHHHHHHHHHHhcCCceEecCCC--CCHHHHHHHHHHHHHHhcC--------------cCHHHHHHHHH-Hhhh Q lcl|Aclame:pro 69 ERDAHLFAEMSKRKRAILGLDWAVEPPRN--ASAAEKADADYLHELLLDL--------------EGLEDLLLDAL-DGIG 131 (526) Q Consensus 69 ~~D~~v~s~l~~Rk~av~~~~w~v~~~~~--~~~~~~~~a~~v~~~l~~~--------------~~~~~~i~~~l-da~~ 131 (526) +.-+.+.+|++..+..+.++.|.|+|..+ .+.+.++..+.+..+++.. ..+..++..++ |-.. T Consensus 59 e~~~~~~~~i~~~~~~iag~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~~t~~~i~~~~~~Dle~ 138 (651) T protein:vir:99 59 ELNETLATGIRKKSRYEVGFGFDLVPAQGVDGDDASDAQREVARNFWRGRSSRWQTGPNQAKTPATPERVKELARQDYHG 138 (651) T ss_pred hcChHHHHHHHHHhhhhhccCceeeecccCCCCccchHHHHHHHHHhhccchhhcccccccCCCCCHHHHHHHHHHHHHH Confidence 56899999999999999999999998442 1222333333333433221 13555665444 5677 Q ss_pred hcceeeeEEEeecCCeeEEeeeeeecCce--------------------------------------------eEecccC Q lcl|Aclame:pro 132 HGYSCIELEWALQGREWMPLAFHHRPQSW--------------------------------------------FQLNPED 167 (526) Q Consensus 132 ~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~--------------------------------------------f~~~~~~ 167 (526) +||+++|++-+.. +. |..+...++.. |....+. T Consensus 139 tGna~ieiIrn~~-g~--pv~L~~lp~~~~Rv~~~~~~~~~~~~~ll~~~pn~~~~~~~~~~~~q~~~~~~~~~~~~g~~ 215 (651) T protein:vir:99 139 VGWLALEMLTDIE-GR--PVGLAYVPARTVRVRRPQNRFDQPRHPEEGRYVDGDVADIASRGYVQIRNGNRRYFGEAGDR 215 (651) T ss_pred HhhHhhhhhhcCc-cc--hhhhhhcChhheeeecccccccchhhhhhhcccccccchhHHHHHHHHHhcCcceEEEeecc Confidence 8999999853211 11 11111111110 0000000 Q ss_pred Cc-------------eEEe---------------------ccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHH Q lcl|Aclame:pro 168 QN-------------ELRL---------------------RDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPY 213 (526) Q Consensus 168 ~~-------------~l~~---------------------~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~ 213 (526) .. .++. ..+......+++...|++++....+.++|.|.+..+.... T Consensus 216 ~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~eViHir~~~~~~g~~G~spl~~a~~~i 295 (651) T protein:vir:99 216 YRGQEVVIDESGDEPTIRYREDEESEREPIFVDRETGDVTTGDANGLENRPANELIFIPNPSILEDDYGVPDWVSAIRTI 295 (651) T ss_pred ccceeeeeccCCcceeEEeccCcceeeeeecccceeeeEEEcCCCceeEecccceEEecCCCCCCCcccccHHHHHHHHH Confidence 00 0000 0001111234555555555555567789999999999999 Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEecCC-CCCHHHHHHHHHHHHHhhcCe--EEEecC-----------CceEEEeecCC Q lcl|Aclame:pro 214 LFRHYATSDLAEMLEIYGLPIRLGKYPP-GTADEEKATLLRAVTGLGHAA--AGIIPE-----------TMAIDFQQAAQ 279 (526) Q Consensus 214 ~fK~~~~~~w~~f~E~~G~P~~vgk~~~-~~~~~e~~~l~~al~~~~~~~--~~iip~-----------~~~ie~~~a~~ 279 (526) ..-....++...|....+.|--|.+++. ..++++++++.+.+.+...++ .+|++. |++++-+..+. T Consensus 296 ~~a~~a~~~~~~~f~NG~~p~gil~~~~~~ls~e~~~~lr~~~~~~~~nagk~~vL~~~~~~~~~~~~~g~~~~pls~~~ 375 (651) T protein:vir:99 296 SADEAAKDYNRDFFDNDTIPRMVIKVTGGELSEESKRDLRQMLNGLREESHRAVVLEVEKFQSQLDEDVEIELEPMGQGI 375 (651) T ss_pred HHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHHhccCCceEEeecccccccccccCCceEEEcCcCc Confidence 9999999999999999999999999864 468888999888888765543 455553 44444443222 Q ss_pred CChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC Q lcl|Aclame:pro 280 GSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEV-RHDLLASDARQLAATLSRDLLWPLLVLNRPGS 358 (526) Q Consensus 280 ~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v-~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~ 358 (526) ..-..|.+..++...+|++++..+..-.+.. ..++++..+.+... ....+.-.++.|+..||+.|++....... T Consensus 376 ~~D~qfle~r~~~~~eIa~afgVPp~~lG~~--~~~~~sn~E~~~~~f~~~tL~P~~~~ie~eln~kLl~~~e~~~~--- 450 (651) T protein:vir:99 376 SEEMDFRQFREKNEHEIAKVLEVPPVKIGVT--DSANRSNSDQQDKDFALEVIQPEQHTFAEWLYQIIHQQALGVTD--- 450 (651) T ss_pred hhhHHHHHHHHHHHHHHHHHhCCCHHHhccC--CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccC--- Confidence 2234588888999999999987775444332 33566666666555 45688899999999999988765433221 Q ss_pred CCcccceeEEecC--ccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCc--cchhcccCCCcccccccccccccc Q lcl|Aclame:pro 359 PDVRRAPRLVFDL--REQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAK--NEPVLRSAAQPAILSRQHGQRVAA 434 (526) Q Consensus 359 ~~~~~~p~~~~~~--~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~--~e~~~~~~~~~~~~~~~~~~~~~~ 434 (526) . .-+|+|+. ....|.+..++.+.++++.|+ ++.+++|+.+|+|+-.+ +...+.+...........+ T Consensus 451 --~--~i~~ef~~~~llr~D~~~~~e~~~~~i~~G~-~T~NE~R~~lglppi~~~~gd~~l~~~~~~~~g~~~~g----- 520 (651) T protein:vir:99 451 --W--TIEYELRGADQPKQEAQLAEQRVRAMRLAGV-GLVDEAREELGLDPLGEPYGEMTLSEFEAEVAGDVAGG----- 520 (651) T ss_pred --c--eEEEEeccchhhhccHHHHHHHHHHHHhCCC-cCHHHHHHHhCCCCCCCccccccccccccccccccccC----- Confidence 0 11345544 345688999999999999997 99999999999987543 2222221111111100000 Q ss_pred cccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 435 LATIVGPRYGDQQALDKALADLPAKDMQNQANDLLAPLLEAVNRGDSETELLGALAEAFPDMDDSALTDALHRLLFAADT 514 (526) Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~s~ee~~~~L~~l~~~l~~~~l~~~l~~a~~~A~l 514 (526) ........+ +... +...++. +.+ +.. |...++.+.+.-....-+- T Consensus 521 -ge~~~~~~~---~~~~---~~~~~e~--------~~~----~~~----------------~~~~e~~~~~~v~ss~~~~ 565 (651) T protein:vir:99 521 -GETEAVHEP---PEEN---KIGEREW--------DTV----KSE----------------LTTKDPIEQMQFSSSNLDE 565 (651) T ss_pred -CCCcccccC---cccc---ccccchh--------hhh----hhh----------------hcccchhhhhhHHHHHHHh Confidence 000000000 0000 0000000 011 111 1112222222222222333 Q ss_pred HhHHhhhhhccC Q lcl|Aclame:pro 515 WGRLHGNLDRID 526 (526) Q Consensus 515 ~G~~~~~~e~~d 526 (526) .|+-.......= T Consensus 566 ~gyd~~~~~l~~ 577 (651) T protein:vir:99 566 GLYDFGENELYL 577 (651) T ss_pred hcCCCccceEEE Confidence 443222211111 No 71 >protein:vir:80134 Length: 403 # NCBI annotation: Phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425602;genbank:gi:155042935;genbank:GeneID:5469563 Probab=99.76 E-value=1.9e-17 Score=112.25 Aligned_cols=386 Identities=12% Similarity=0.050 Sum_probs=218.1 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+ |.+..++ +....+..+ +... ........++. ..+.. +. +.+.|.+|+.. T Consensus 1 Mg-~~~~f~~----k~~~~~~~~-~~~~---~~~~~~~~~~~---------------~~~~~----~~-~~~~V~~~I~~ 51 (403) T protein:vir:80 1 MG-LFNFFRR----KTRSEPTNA-ISWF---LTQEAYDTLAI---------------PGYTR----LS-DNPEVRMAVHK 51 (403) T ss_pred Cc-ccccccc----cccccccch-hhhh---ccccccccccc---------------chhhh----hh-hhHHHHHHHHH Confidence 98 6665443 222221111 1100 00000000000 00111 11 36789999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcC----HHHHHHHHH-Hhhh--hcceeeeEEEeecCCeeEEeee Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEG----LEDLLLDAL-DGIG--HGYSCIELEWALQGREWMPLAF 153 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~----~~~~i~~~l-da~~--~G~s~~Ei~w~~~~g~~~~~~l 153 (526) +...|.++++.+.-..++.. +.+..-+...|+..|+ ..++++.++ +.+. +|+++++++|+..+ .|..| T Consensus 52 ia~~iA~~p~~~~~~~~~g~--~~~~~~~~~lL~~~PN~~~t~~~f~~~~v~~~ll~~~Gna~i~~~~~~~g---~~~~L 126 (403) T protein:vir:80 52 IAELISSMTIHLMQNTDNGD--IRIKNELSRKIDINPYSLMTRKAWMYNIVYTMLLDGEGNSVVFPKYTTSG---LIDEL 126 (403) T ss_pred HHHhhhhCceEEEEecCCce--eecCChHHHHHhccCCcCCCHHHHHHHHHHHHhhcCCccEEEEEEEcCCC---cEEEE Confidence 99999999999864332211 1122223344543332 345555554 3444 68899999875433 46788 Q ss_pred eeecCceeEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHcCC Q lcl|Aclame:pro 154 HHRPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGY-VARSGLFRVLAWPYLFRHYATSDLAEMLEIYGL 232 (526) Q Consensus 154 ~~r~~~~f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~-p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~ 232 (526) .+.++.++++..+.....++. .+..+++...++++....+.+ .+|.|.+..+...+-.-....++...|....+. T Consensus 127 ~~l~p~~v~~~~~~~g~~~~y----~~~~~~~~eiih~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~ 202 (403) T protein:vir:80 127 IPLAPSKVSFVDTDTGYQIWY----QGKAYNYDEVLHFIVNPDPEKPYMGRGYRVVLKDIVNNLKQATTTKKSFMSGKYM 202 (403) T ss_pred EEEcCCeeEEEEcCCceEEEE----eecccchhhEEEEeccCCCcCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCC Confidence 899998887655444322222 123466666665564444444 459999998888877777778888899999899 Q ss_pred ceEEEecCCCCCHHHHHHHHHHHHHh-----hcCeEEEecCCce-E-EEeecCCCChHHHHHHHHHHHHHHHHHHhchhh Q lcl|Aclame:pro 233 PIRLGKYPPGTADEEKATLLRAVTGL-----GHAAAGIIPETMA-I-DFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTL 305 (526) Q Consensus 233 P~~vgk~~~~~~~~e~~~l~~al~~~-----~~~~~~iip~~~~-i-e~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtl 305 (526) |--|.+++...+++..+++.+.+.+. .++..+++|.+.. . ++...+. .-..|.+..++...+|++++..+.- T Consensus 203 p~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~-~d~q~~e~~~~~~~~Ia~~fgVPp~ 281 (403) T protein:vir:80 203 PSLIVKVDAATAELSSEEGRNAVFKKYLEASEAGQPWIIPAELLDVEQVKPLSL-KDLAIHETVELDKRTVAGIFGVPAF 281 (403) T ss_pred cceEEEeCCCCChHHHHHHHHHHHHHHhhhhhcCCeeeecccccccceeccCCH-HHHHHHHHHHHhHHHHHHHhCCCHH Confidence 99999998877776666655554432 2335567776642 2 2322221 2234667788899999999876653 Q ss_pred hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEec--CccccCHHHHHHH Q lcl|Aclame:pro 306 TSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFD--LREQADITSMAQS 383 (526) Q Consensus 306 tt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~--~~e~edl~~~a~~ 383 (526) -.+.++ ++.+ ........-+.-.++.|+..||+.|+.. .+. +|+|+ .....|.++++++ T Consensus 282 ~lg~~~---~~~~---~~~~f~~~~l~P~~~~ie~~l~~kll~~-----------~~~--~~~f~~~~ll~~d~~~~~~~ 342 (403) T protein:vir:80 282 LLGVGK---YDKD---EYNNFINSTILPIAKGIEQELTRKLLIS-----------PDL--YFKFNPRSLYAYDLKELAEV 342 (403) T ss_pred HcCCCC---ccHH---HHHHHHHHHHHHHHHHHHHHHHHhccCC-----------CCc--EEEeechhhhccCHHHHHHH Confidence 222111 1111 1233445667788888888888766521 122 35554 3345689999999 Q ss_pred HHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccccccc Q lcl|Aclame:pro 384 IPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQA 448 (526) Q Consensus 384 ~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (526) +.++++.|+ ++.+++|+.+|+|+-+.++....+....+ ... .+.......+.... ...+.+ T Consensus 343 ~~~~~~~Gi-~t~NE~R~~~gl~p~~ggd~~~~~~n~~p-l~~-~~~~~~~k~ge~~~-~~~~~~ 403 (403) T protein:vir:80 343 GSNMYVRGL-MEGNEVRDWLGLSPKEGLSELVILENYIP-LDK-IGDQNKLKGGEKGG-ADGQTD 403 (403) T ss_pred HHHHHhCCC-cCHHHHHHHhCCCCCCCCCeEeecccccc-hhh-ccchhhccCCCCCC-CCCCCC Confidence 999999998 99999999999998766665443322111 110 01000000000000 000001 No 72 >protein:vir:3989 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116497;genbank:gi:14251130;genbank:GeneID:921299 Probab=99.76 E-value=1.2e-17 Score=113.44 Aligned_cols=377 Identities=10% Similarity=-0.002 Sum_probs=216.3 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+ +++..-+.-+....+.+..... .+.. ..+...+... .|.. +......+.+.|.+|+.. T Consensus 3 m~-~f~~~~~~~~~~~~~~~~~~~~------------~~~~-~~~~~~~~~~-~~~~-----v~~~~al~~~~v~~~i~~ 62 (392) T protein:vir:39 3 LP-ILNFINQTNDPPEVGSVQSYFP------------DGND-AQIMESLLGD-NNEW-----VSARAALRNSDLFSIILQ 62 (392) T ss_pred ch-hhhhhhcccccccccccccccc------------cCch-hhhhhhhcCC-CCce-----echHHhhccHHHHHHHHH Confidence 55 5554322111111111111100 0001 1111111111 1111 111112257899999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCc Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQS 159 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~ 159 (526) +-..|.++++.+.... .. .+++..-..+ ...++++.+. +.+.+|.++++++++..| .+..|.+.++. T Consensus 63 ia~~ia~lp~~~~~~~-----~~---~l~~~PN~~~-t~~~f~~~~~~~lll~Gna~~~i~r~~~g---~~~~L~~l~~~ 130 (392) T protein:vir:39 63 LSSDLAIVKINAEKKK-----NQ---GIIDNPSTNA-NKHGFWQSMFAQLLLGGEAFAYRWRNANG---ADMKWEYLRPS 130 (392) T ss_pred HHHhhccCceeeccch-----hh---hHhhcCCCCC-CHHHHHHHHHHHhhhcCcEEEEEEECCCC---cEEEEEEEcCc Confidence 9999999999887321 11 1111111112 2456666666 678899999999876543 36789999998 Q ss_pred eeEecccC-CceEEec--cCCCC---ceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCc Q lcl|Aclame:pro 160 WFQLNPED-QNELRLR--DNSPA---GEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLP 233 (526) Q Consensus 160 ~f~~~~~~-~~~l~~~--~~~~~---g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P 233 (526) ++.+..+. +..+.++ .+... -..+++...++.++....+..+|.|.+..+...+-.-....++...+....+.| T Consensus 131 ~v~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p 210 (392) T protein:vir:39 131 QVNTYYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNV 210 (392) T ss_pred eeEEEEcCCCceEEEEEEecCcccceeEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCC Confidence 77765533 2233322 22111 134677776666665556668999999999999999999999999999999999 Q ss_pred eEEEecCCCC--CHHHHHHHHHHHHHhhc-CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccc Q lcl|Aclame:pro 234 IRLGKYPPGT--ADEEKATLLRAVTGLGH-AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTS 310 (526) Q Consensus 234 ~~vgk~~~~~--~~~e~~~l~~al~~~~~-~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~ 310 (526) --+.+++.+. +++++..+.+......+ ...+|+|.|++++-++.+. .-..|.+..++..++|++++..+.-..+.. T Consensus 211 ~gil~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~-~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~ 289 (392) T protein:vir:39 211 PGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKS-NVAQLLSQTDWTSKQYAKVYGLPDSYIGGQ 289 (392) T ss_pred ceEEEeCCCCCchHHHHHHHHHHHhccccCCCeeecCCCceEEEccCCh-hHHHHHHHHHHHHHHHHHHhCCCHHHhCCC Confidence 9999997653 34445555555554433 3468889999888776432 233577888899999999986664433211 Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhC Q lcl|Aclame:pro 311 QSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNV 390 (526) Q Consensus 311 ~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~ 390 (526) + .+++..+........-+...++.|+..+|+.|.+.+ .+| +......|...+++.+.+|+.. T Consensus 290 -~--~~~~~~~~~~~f~~~~l~P~~~~ie~~l~~~L~~~~-~~d--------------~~~~~~~d~~~~~~~~~~l~~~ 351 (392) T protein:vir:39 290 -G--DQQSSIQQISGMYASALNRYLRPAISELEYKLSDHI-SVN--------------MRPAIDPLGDNYLSTISTATRW 351 (392) T ss_pred -C--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccc--------------chhhhccCHHHHHHHHHHHHhC Confidence 1 112222223334556677888888899988775432 111 1112234667888899999998 Q ss_pred CCcCCHHHHHHHh---CCCCCCccchhcccCCCccccccccccccccccccccc Q lcl|Aclame:pro 391 GLEIPSAWVYDKL---GIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGP 441 (526) Q Consensus 391 G~~v~~~~~~e~~---Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (526) |+ ++.+++|+.+ |+.+ .+ +......++.+. + ....+.+ T Consensus 352 g~-~t~nE~r~~l~~~g~~p-~e---~r~~e~l~~~~~---G-----d~~~p~p 392 (392) T protein:vir:39 352 GA-LAENQATFVLQEAGYIP-KD---LPAPENTNKKTT---G-----QSNEPVP 392 (392) T ss_pred CC-cCHHHHHHHHHhcCCCc-cc---cchhcCCCCCCC---C-----CCCCCCC Confidence 87 8888888877 6642 11 111111110000 0 0000000 No 73 >protein:vir:1023 Length: 392 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076677;genbank:gi:13095786;genbank:GeneID:920364 Probab=99.76 E-value=1.2e-17 Score=113.44 Aligned_cols=377 Identities=10% Similarity=-0.002 Sum_probs=216.3 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+ +++..-+.-+....+.+..... .+.. ..+...+... .|.. +......+.+.|.+|+.. T Consensus 3 m~-~f~~~~~~~~~~~~~~~~~~~~------------~~~~-~~~~~~~~~~-~~~~-----v~~~~al~~~~v~~~i~~ 62 (392) T protein:vir:10 3 LP-ILNFINQTNDPPEVGSVQSYFP------------DGND-AQIMESLLGD-NNEW-----VSARAALRNSDLFSIILQ 62 (392) T ss_pred ch-hhhhhhcccccccccccccccc------------cCch-hhhhhhhcCC-CCce-----echHHhhccHHHHHHHHH Confidence 55 5554322111111111111100 0001 1111111111 1111 111112257899999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCc Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQS 159 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~ 159 (526) +-..|.++++.+.... .. .+++..-..+ ...++++.+. +.+.+|.++++++++..| .+..|.+.++. T Consensus 63 ia~~ia~lp~~~~~~~-----~~---~l~~~PN~~~-t~~~f~~~~~~~lll~Gna~~~i~r~~~g---~~~~L~~l~~~ 130 (392) T protein:vir:10 63 LSSDLAIVKINAEKKK-----NQ---GIIDNPSTNA-NKHGFWQSMFAQLLLGGEAFAYRWRNANG---ADMKWEYLRPS 130 (392) T ss_pred HHHhhccCceeeccch-----hh---hHhhcCCCCC-CHHHHHHHHHHHhhhcCcEEEEEEECCCC---cEEEEEEEcCc Confidence 9999999999887321 11 1111111112 2456666666 678899999999876543 36789999998 Q ss_pred eeEecccC-CceEEec--cCCCC---ceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCc Q lcl|Aclame:pro 160 WFQLNPED-QNELRLR--DNSPA---GEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLP 233 (526) Q Consensus 160 ~f~~~~~~-~~~l~~~--~~~~~---g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P 233 (526) ++.+..+. +..+.++ .+... -..+++...++.++....+..+|.|.+..+...+-.-....++...+....+.| T Consensus 131 ~v~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p 210 (392) T protein:vir:10 131 QVNTYYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNV 210 (392) T ss_pred eeEEEEcCCCceEEEEEEecCcccceeEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCC Confidence 77765533 2233322 22111 134677776666665556668999999999999999999999999999999999 Q ss_pred eEEEecCCCC--CHHHHHHHHHHHHHhhc-CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccc Q lcl|Aclame:pro 234 IRLGKYPPGT--ADEEKATLLRAVTGLGH-AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTS 310 (526) Q Consensus 234 ~~vgk~~~~~--~~~e~~~l~~al~~~~~-~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~ 310 (526) --+.+++.+. +++++..+.+......+ ...+|+|.|++++-++.+. .-..|.+..++..++|++++..+.-..+.. T Consensus 211 ~gil~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~-~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~ 289 (392) T protein:vir:10 211 PGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKS-NVAQLLSQTDWTSKQYAKVYGLPDSYIGGQ 289 (392) T ss_pred ceEEEeCCCCCchHHHHHHHHHHHhccccCCCeeecCCCceEEEccCCh-hHHHHHHHHHHHHHHHHHHhCCCHHHhCCC Confidence 9999997653 34445555555554433 3468889999888776432 233577888899999999986664433211 Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhC Q lcl|Aclame:pro 311 QSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNV 390 (526) Q Consensus 311 ~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~ 390 (526) + .+++..+........-+...++.|+..+|+.|.+.+ .+| +......|...+++.+.+|+.. T Consensus 290 -~--~~~~~~~~~~~f~~~~l~P~~~~ie~~l~~~L~~~~-~~d--------------~~~~~~~d~~~~~~~~~~l~~~ 351 (392) T protein:vir:10 290 -G--DQQSSIQQISGMYASALNRYLRPAISELEYKLSDHI-SVN--------------MRPAIDPLGDNYLSTISTATRW 351 (392) T ss_pred -C--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccc--------------chhhhccCHHHHHHHHHHHHhC Confidence 1 112222223334556677888888899988775432 111 1112234667888899999998 Q ss_pred CCcCCHHHHHHHh---CCCCCCccchhcccCCCccccccccccccccccccccc Q lcl|Aclame:pro 391 GLEIPSAWVYDKL---GIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGP 441 (526) Q Consensus 391 G~~v~~~~~~e~~---Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (526) |+ ++.+++|+.+ |+.+ .+ +......++.+. + ....+.+ T Consensus 352 g~-~t~nE~r~~l~~~g~~p-~e---~r~~e~l~~~~~---G-----d~~~p~p 392 (392) T protein:vir:10 352 GA-LAENQATFVLQEAGYIP-KD---LPAPENTNKKTT---G-----QSNEPVP 392 (392) T ss_pred CC-cCHHHHHHHHHhcCCCc-cc---cchhcCCCCCCC---C-----CCCCCCC Confidence 87 8888888877 6642 11 111111110000 0 0000000 No 74 >protein:vir:8100 Length: 466 # NCBI annotation: gp4 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817681;genbank:gi:29566112;genbank:GeneID:1259306 Probab=99.76 E-value=2.4e-17 Score=111.72 Aligned_cols=430 Identities=11% Similarity=-0.004 Sum_probs=231.3 Q ss_pred CCeeecCCCCccCccc--cchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCC-CHHHHHHHHHHHHhccHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQ--LREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQG-NLQAQAELFMDMEERDAHLFAE 77 (526) Q Consensus 1 m~~~~~~~g~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g-~~~~~~~l~~~m~~~D~~v~s~ 77 (526) |+ ++|-..+-...+. ..++.....-.....+..+.. +++-.++...+...... ....+..+-.+-..+-+.|.+| T Consensus 1 M~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~a~~~~~v~~~ 78 (466) T protein:vir:81 1 MR-LIDRLLSTRGAAPRMSIDDYAQMLNEFAFNGIGYGF-GGGVPRIQQTLAGPSTELAPDTFVGLATQAYQANGPVFAC 78 (466) T ss_pred Cc-hhHHHhhccCcccccchhhhhhhhhhhhcccccccc-ccccHHHHHhhccccccccCccccccchhhhhccHHHHHH Confidence 76 5555433222111 111111111011111112221 22222333333321100 0011222222223368999999 Q ss_pred HHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCC-----e Q lcl|Aclame:pro 78 MSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGR-----E 147 (526) Q Consensus 78 l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g-----~ 147 (526) +..+-..|.+++|.+.-..+.... +.....+..++ ..| ...++++.++ +.+++|.+++++++...+. . T Consensus 79 i~~Ia~~ia~lp~~~~~~~~~~~~-~~~~~~~~~L~-~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~g~l~~~~~ 156 (466) T protein:vir:81 79 MLVRQLVFSSVRFRWQRLRDGKPS-DTFGSRDLQIL-ETPWKGGTTQDMLSRMIQDADLAGNSYWTIVDGEFVRMRPDWV 156 (466) T ss_pred HHHHHHhhccCceEEEEecCCcee-eccccHHHHHh-hCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEecCccccccccC Confidence 999999999999999865433221 11112222333 222 2456666666 6888999999998754321 1 Q ss_pred eEEeeeeeecCceeEecccCCc--eEEe--ccCC----CCceeecCCCeEEEeecC-CCCccccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 148 WMPLAFHHRPQSWFQLNPEDQN--ELRL--RDNS----PAGEALQPFGWIIHRPRA-RSGYVARSGLFRVLAWPYLFRHY 218 (526) Q Consensus 148 ~~~~~l~~r~~~~f~~~~~~~~--~l~~--~~~~----~~g~~lp~~k~i~~~~~~-~~g~p~g~gLl~~~~~~~~fK~~ 218 (526) -.+..+.+.++..+.+...... .+.+ ..++ .....+++...|++++.. ..+..+|.|.+..+....-.-.. T Consensus 157 g~~~~l~~l~~~~v~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~dviHir~~~~~~d~~~G~s~i~~~~~~i~~~~a 236 (466) T protein:vir:81 157 DVVVEERMVRGGRGELGGGQLGWRKVGYLYTEGGRQSGNESVGFLAEDVVHFAPIPDPLASYRGMSWLTPILREIRADQA 236 (466) T ss_pred cceeEEEEecCcceEEEEcCCCceEEEEEEEecCcccccceeeeccccEEEEcCCCCcccccccccHHHHHHHHHHHHHH Confidence 2366888888887766543332 2222 2221 233457887776666543 34566899999999998888888 Q ss_pred HHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHhhc-----CeEEEecCCceEEEeecCCCChHHHHHHHHHHH Q lcl|Aclame:pro 219 ATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGH-----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSE 293 (526) Q Consensus 219 ~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~-----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d 293 (526) ..++-..|....+.|--|.+++...++++++++.+.+.+.-. ...+|++.|++++-+..+. .-..|.+..++.. T Consensus 237 ~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~-~d~q~le~~~~~~ 315 (466) T protein:vir:81 237 MSKHQAKFFDNGATVNLVIKHNPMADPAAVKKWADEVNSKHAGVDNAWKNLNLYPGADADVVGSNL-QEIDFKNVRGGGE 315 (466) T ss_pred HHHHHHHHHhcCCCcceEEecCCCCCHHHHHHHHHHHHHHhcCccccccceEcCCCceEEEccCCh-hHHHHHHHHHHHH Confidence 889999999999999999999998999999999988877532 2368899999888776432 3345778889999 Q ss_pred HHHHHHHhchhhhccccc-ccchhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecC Q lcl|Aclame:pro 294 DAISKAVLGGTLTSTTSQ-SGGGAFALGQVHN-EVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDL 371 (526) Q Consensus 294 ~~Isk~ilGqtltt~~~~-~~~gS~a~~~vh~-~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~ 371 (526) ++|++++..+.--.+..+ .+.++|+..+-+. .....-+.-.++.|+..||+.|+..- .....+.+|.... T Consensus 316 ~~Ia~~fgVPp~~lG~~~~~~~st~sn~eq~~~~f~~~tl~P~~~~ie~~l~~~L~~~~--------~~~~~~~~f~~~~ 387 (466) T protein:vir:81 316 TRIAAAAGVPPVIVGLSEGLAAATYSNYGQARRRLADGTAHPLWQNLSGCIGHVMPDMG--------PDVRLWYDADDVP 387 (466) T ss_pred HHHHHHhCCCHHHcccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc--------cCcceEEEecchh Confidence 999999866543332211 1234444333333 33456778888999999988765421 1112222333333 Q ss_pred ccccCHHHHHHH-------HHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccc Q lcl|Aclame:pro 372 REQADITSMAQS-------IPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYG 444 (526) Q Consensus 372 ~e~edl~~~a~~-------~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (526) .-..|.+..+++ ++.+++.|+ +++++|..... .+...+.+...........+......... +... T Consensus 388 llr~d~~~r~~~~~~~~~~~~~~~~~g~--t~nE~r~~~~~----gd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 459 (466) T protein:vir:81 388 FLREDEKDAADIQKVRAETINTLITAGY--EPESVVAAVNS----GDLRLLKHTGLTSVQLLPPGVSASASSDT--PTSG 459 (466) T ss_pred hhccCHHHHHHHHHHHHHHHHHHHHcCC--ChhhccccccC----CccccccCCCcchhhhcccccccccCCCC--cccC Confidence 334576665544 677888884 78888864321 11111111100000000000000000000 0000 Q ss_pred cccchHH Q lcl|Aclame:pro 445 DQQALDK 451 (526) Q Consensus 445 ~~~~~~~ 451 (526) ..+.-.+ T Consensus 460 Gg~~ngn 466 (466) T protein:vir:81 460 GADDNGN 466 (466) T ss_pred CCCcCCC Confidence 0000000 No 75 >protein:vir:80796 Length: 574 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504121;genbank:gi:158079308;genbank:GeneID:5666445 Probab=99.76 E-value=9.2e-17 Score=108.49 Aligned_cols=461 Identities=9% Similarity=0.026 Sum_probs=226.6 Q ss_pred CCeeecCC-CCcc------------------------Cccccchhh-hhhhhhhhhhh--------hhhhhcc-----cC Q lcl|Aclame:pro 1 MAQIVDVY-GNPI------------------------RTQQLREPQ-TSRLAGLAKEF--------AQHPAKG-----LT 41 (526) Q Consensus 1 m~~~~~~~-g~p~------------------------~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~-----l~ 41 (526) |++.+|+. |--- +.+..++.+ ..++-+..... ...+..+ .+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (574) T protein:vir:80 1 MPKWLDKALGIEKSSIEETRNMENYKMHLREIDTNVVNNEPYSMESIEKGMNGKTTAYMQPIIGEMSVNPGYKTKPSIRN 80 (574) T ss_pred CcchhhhhhccchhhHHHHHhhhhhccccchhhhhhhhccCCCHHHHHHhHhhhcccccchhhhhccccccccCcCccCC Confidence 77777763 3210 001111000 00000000000 0000000 12 Q ss_pred HHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHHHHH-----------HHhcCCceEecCCCCC---HHHHHHHH Q lcl|Aclame:pro 42 PAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSKRKR-----------AILGLDWAVEPPRNAS---AAEKADAD 107 (526) Q Consensus 42 ~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~-----------av~~~~w~v~~~~~~~---~~~~~~a~ 107 (526) |..+..+++.... .+.|..++..|+. .+.+++|.|.....+. ..+.+... T Consensus 81 ~~~~~~~l~~~~~----------------~~iv~~~i~~~~~~V~~~~~~i~~~ia~lp~~i~~kd~~~~~~~~~~~~~~ 144 (574) T protein:vir:80 81 SQDLHKTLKKFGN----------------NIILNAIINTRSNQVSMYCKPARNSETGVGYEIRLKDIEAEPTSHDIANIK 144 (574) T ss_pred cccHHHHHHhhcc----------------ChhHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEeccCCCccchhhhhhh Confidence 2233333333322 3444555555554 4457999997543211 11111112 Q ss_pred HHHHHHhcC--------cCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCceeEecccCCce-------E Q lcl|Aclame:pro 108 YLHELLLDL--------EGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQSWFQLNPEDQNE-------L 171 (526) Q Consensus 108 ~v~~~l~~~--------~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~~~~~~~~-------l 171 (526) .+...|.+. ..|.++++.++ +.+.+|.+++|++++..| .|..|.+.++.++++..+.... + T Consensus 145 ~l~~ll~~~~~~~nP~~~s~~ef~~~lv~~lll~Gnayi~i~r~~~G---~~~~L~pl~p~~V~v~~d~~~~~~~~~~~y 221 (574) T protein:vir:80 145 RIESFLENTAQFRDPNRDNFTTFCKKLVRATYMYDQVNFEKVFDKDG---NFIKFDTVDPTTIFLATNGEGKLIKNGERF 221 (574) T ss_pred HHHHHHhccCCCCCCccccHHHHHHHHHHHHHhcCCeEEEEEECCCC---cEEEEEEEcCceeEEEEcCccccccCceEE Confidence 233333221 23567787777 477899999999986554 3678999999888776543321 2 Q ss_pred EeccCCCCceeecCCCeEEEeecCCCC---ccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCC--CCCHH Q lcl|Aclame:pro 172 RLRDNSPAGEALQPFGWIIHRPRARSG---YVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPP--GTADE 246 (526) Q Consensus 172 ~~~~~~~~g~~lp~~k~i~~~~~~~~g---~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~--~~~~~ 246 (526) ....++.....+++...|++++...++ ..||.|.+..+....-.-....++...|....+.|--|.+++. ..+++ T Consensus 222 ~~~~~g~~~~~~~~~eiih~~~~~~~~~~~~~~G~spi~~a~~~i~~~~~a~~~~~~~f~ng~~p~gil~~~~~~~ls~e 301 (574) T protein:vir:80 222 VQVIDNRIVAKFNERELAFAVRNPRADIEVGQYGYPELEIALKQFIAHENTEVFNDRFFSHGGTTRGILHVKTGQQQSQQ 301 (574) T ss_pred EEEeCCceEEEEccccEEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCCHH Confidence 222233333457777777777655443 5689999999999998888889999999999999987777643 35888 Q ss_pred HHHHHHHHHHHhhc---Ce---EEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccc-------- Q lcl|Aclame:pro 247 EKATLLRAVTGLGH---AA---AGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQS-------- 312 (526) Q Consensus 247 e~~~l~~al~~~~~---~~---~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~-------- 312 (526) +++++.+.+.+.-+ ++ .++.+.|+++.-+..+ ..-..|.+..++..++|+.++..+.--.+..+. T Consensus 302 ~~~~lk~~~~~~~~G~~n~g~~~vl~~~G~~~~~l~~s-~~D~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~t~~gs~~ 380 (574) T protein:vir:80 302 ALDIFRREWRSSLAGINGSWQIPVVSAEDVKFVNMTPS-ANDMQFEKWLNYLINVISALYGIDPAEINFPNNGGATGSKG 380 (574) T ss_pred HHHHHHHHHHHHhccccccccceeecCCCceEEEccCC-hhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccccccc Confidence 88888888776522 33 2344677766555432 222357788888999999998655422211110 Q ss_pred cchhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 313 GGGAFALGQVHNEV-RHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVG 391 (526) Q Consensus 313 ~~gS~a~~~vh~~v-~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G 391 (526) +..+++..+..... ....+...++.|+..||+.|++.+ .. . -.|+|...+-.+.....+ +.+++..| T Consensus 381 ~~~n~sn~E~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~-----~~----~--~~~~f~~~d~~~~~~~~~-~~~~~~~G 448 (574) T protein:vir:80 381 GSLNEGNSKEKMQASQNKGLQPLLRFIEDTVNTYIVAEF-----GE----K--YQFQFRGGDLSAQLDKLK-IIEQEGKV 448 (574) T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-----CC----c--eEEEecccchhhHHHHHH-HHHHHhCC Confidence 11224444444433 445788899999999999887632 11 1 146666443333222222 23456678 Q ss_pred CcCCHHHHHHHhCCCCCCccchhcccCCCcccc--------c--ccccc------cccccccccccccccccchHHHHHH Q lcl|Aclame:pro 392 LEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAIL--------S--RQHGQ------RVAALATIVGPRYGDQQALDKALAD 455 (526) Q Consensus 392 ~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~--------~--~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (526) + ++.+++|+.+|+|+.+.++..+.+....... . ..... ........+....+.....|+.... T Consensus 449 ~-lT~NE~R~~lgl~Pi~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~ 527 (574) T protein:vir:80 449 F-RTVNEIRHDKGLEPIKGGDVILNGVHIQAIGQALQEEQLEYQRSQDRLNRLLELSGGDVEQPEPEEPKDSQNDTDVSF 527 (574) T ss_pred c-cCHHHHHHHhCCCCCCCCCEeeeccceeecccccccccCCccchhccccccccccCCCCCCCCCCCCCCccccccchh Confidence 6 9999999999999877666554321110000 0 00000 0000001111111111111111100 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHH------Hhh-cCCHHHHHH Q lcl|Aclame:pro 456 LPAKDMQNQANDLLAPLLEAVNRGDSETE-LLGALAE------AFP-DMDDSALTD 503 (526) Q Consensus 456 ~~~~~~~~~~~~~~~~i~~~~~~a~s~ee-~~~~L~~------l~~-~l~~~~l~~ 503 (526) . +........ .....+.+-++ .-+.+.. .+. .++... .+ T Consensus 528 ~---~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 574 (574) T protein:vir:80 528 Q---DEQQGLNGK-----SKKVNGKVDDNVGKDGQLKSEENTNSTKHGTDGIK-KE 574 (574) T ss_pred h---hhhhhhccc-----hhhhcCCcccccccccccccccccccccccCcccc-CC Confidence 0 000000000 00000000000 0000000 000 011000 01 No 76 >protein:vir:95599 Length: 563 # NCBI annotation: ORF014 # Family: family:all:2446 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240900;genbank:gi:66394963;genbank:GeneID:5132540 Probab=99.75 E-value=1.8e-17 Score=112.37 Aligned_cols=449 Identities=10% Similarity=0.043 Sum_probs=225.5 Q ss_pred CCeeecCCCC----cc------Ccccc-chhh----------------hhhhhhhhh---hhhhhhhcccC-HHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGN----PI------RTQQL-REPQ----------------TSRLAGLAK---EFAQHPAKGLT-PAKLARIL 49 (526) Q Consensus 1 m~~~~~~~g~----p~------~~~~~-~~~~----------------~~~~~~~~~---~~~~~~~~~l~-~~~~~~~l 49 (526) +++=++-... || .++.. ..|. +...+..-. .+...+. .++ +..+..+| T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l 88 (563) T protein:vir:95 10 LGKDYGNNSTIAQVPIDEGLQANIKKIEQDNKEYQDLTKSLYGQQQAYAEPFIEMMDTNPEFRDKRS-YMKNEHNLHDVL 88 (563) T ss_pred cccccccccccceeeccCChhhhHhhhhccchhHHHHHhhhccCCCcchhhhHhhhccccccccccc-CCCCcccHHHHH Confidence 3332222111 11 00000 0000 000000000 0000000 011 11222222 Q ss_pred HcccCCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-----------CCceEecCCCC---CHHHHHHHHHHHHHHh- Q lcl|Aclame:pro 50 VEAEQGNLQAQAELFMDMEERDAHLFAEMSKRKRAILG-----------LDWAVEPPRNA---SAAEKADADYLHELLL- 114 (526) Q Consensus 50 ~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~av~~-----------~~w~v~~~~~~---~~~~~~~a~~v~~~l~- 114 (526) + .+. .-+.+.+|+.+|...|.. ..|.|..-..+ ...+.+....++..|. T Consensus 89 ~---------------~~~-~n~i~~~~I~t~~~~vA~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~ 152 (563) T protein:vir:95 89 K---------------KFG-NNPILNAIILTRSNQVAMYCQPARYSEKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVN 152 (563) T ss_pred H---------------Hhh-cchHHHHHHHHHHHHHHHHhhhhhhhcccccceeEEeecCCCcchhhhhhhHHHHHHhhh Confidence 2 222 245666777777766653 34555432211 1111121222333332 Q ss_pred ---c-Cc---CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCceeEecccCCceEE-------eccCCCC Q lcl|Aclame:pro 115 ---D-LE---GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQSWFQLNPEDQNELR-------LRDNSPA 179 (526) Q Consensus 115 ---~-~~---~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~~~~~~~~l~-------~~~~~~~ 179 (526) . .+ .|.+++..++ +.+.+|.+.+|+++.+++. -.|..|.+.++.++++..+....+. ...++.. T Consensus 153 ~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~-G~~~~L~pl~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~ 231 (563) T protein:vir:95 153 TGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNK-TKLEKFIAVDPSTIFYATDKKGKIIKGGKRFVQVVDKRV 231 (563) T ss_pred cCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecCC-CceEEEEEeCCceeEEEECCCCceeccceeEEEEeCCce Confidence 1 11 3567777666 5889999999999887643 3467899999998887655444332 2222333 Q ss_pred ceeecCCCeEEEeecCCCC---ccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCC--CCHHHHHHHHHH Q lcl|Aclame:pro 180 GEALQPFGWIIHRPRARSG---YVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPG--TADEEKATLLRA 254 (526) Q Consensus 180 g~~lp~~k~i~~~~~~~~g---~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~--~~~~e~~~l~~a 254 (526) ...+++...|+|+.....+ .+||.|.+..+...+..-....++...|....|.|--|.+++.+ .++++++++.+. T Consensus 232 ~~~~~~~evI~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~~~~~~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~ 311 (563) T protein:vir:95 232 VASFTSRELAMGIRNPRTELSSSGYGLSEVEIAMKEFIAYNNTESFNDRFFSHGGTTRGILQIRSDQQQSQHALENFKRE 311 (563) T ss_pred eEEecCcceEEEeccCCCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCCCHHHHHHHHHH Confidence 3457777878888766544 67899999999999999999999999999999999888877643 578888888888 Q ss_pred HHHhhc---Ce---EEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhccccc-------ccch--hhhh Q lcl|Aclame:pro 255 VTGLGH---AA---AGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQ-------SGGG--AFAL 319 (526) Q Consensus 255 l~~~~~---~~---~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~-------~~~g--S~a~ 319 (526) +.+.-+ ++ .+|++.|++++=++.+. .-..|.+..++..++|++++..+.--.+..+ +.++ +++. T Consensus 312 ~~~~~~G~~nagk~~~vl~~G~~~~~l~~~~-~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn 390 (563) T protein:vir:95 312 WKSSLSGINGSWQIPVVMADDIKFVNMTPTA-NDMQFEKWLNYLINIISALYGIDPAEIGFPNRGGATGSKGGSTLNEAD 390 (563) T ss_pred HHHHhccccccccceEEcCCCceEEeccCCh-hHHHHHHHHHHHHHHHHHHhCCCHHHccccccccccccccccchhhcc Confidence 887532 23 36779998776665432 2235788888999999999765542221111 1112 2222 Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHH--HHHhCCCcCCH Q lcl|Aclame:pro 320 GQVH-NEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIP--ALVNVGLEIPS 396 (526) Q Consensus 320 ~~vh-~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~--~l~~~G~~v~~ 396 (526) .+.. .......+..-++.|+..||+.|++.+ +. .-+|.|... |.+..++..+ +++..|+ ++. T Consensus 391 ~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~~-----~~------~~~~~f~r~---D~~~~~e~~~~~~~~~~G~-lT~ 455 (563) T protein:vir:95 391 PGKKQQQSQNKGLQPLLRFIEDLVNRHIISEY-----GD------KYTFQFVGG---DTKSATDKLNILKLETQIF-KTV 455 (563) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhc-----cc------ccEEEeccC---CHHHHHHHHHHHHHhcCCc-cCH Confidence 2222 233456778888999999999887642 11 113555433 5555555443 4566776 899 Q ss_pred HHHHHHhCCCCCCccchhcccCCCcccccc----c---cccc---------ccccccccccccccccchHHHHHHHHHHH Q lcl|Aclame:pro 397 AWVYDKLGIPQPAKNEPVLRSAAQPAILSR----Q---HGQR---------VAALATIVGPRYGDQQALDKALADLPAKD 460 (526) Q Consensus 397 ~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~----~---~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (526) +++|+.+|+|+.+.++..+.+....+.... . ...+ .......++...+.....++. ...++ T Consensus 456 NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 532 (563) T protein:vir:95 456 NEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQYNDGKQKERLQMMMSLLEGDNDDSEEGQSTDSSNDDK---EIGTD 532 (563) T ss_pred HHHHHHhCCCCCCCcceeecccccccccccccccCCCccccchhhhhcccccCCCCCCCCCCCCCCCCCCcc---ccccc Confidence 999999999987776655432111000000 0 0000 000000000000000000000 00000 Q ss_pred HHHHHHHHHHHH-----HHHHHhcCCHHHHHH Q lcl|Aclame:pro 461 MQNQANDLLAPL-----LEAVNRGDSETELLG 487 (526) Q Consensus 461 ~~~~~~~~~~~i-----~~~~~~a~s~ee~~~ 487 (526) .+.-.++.+++. .+-++ .+-.+++.. T Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 563 (563) T protein:vir:95 533 AQIKGDDNVYRTQTSNKGQGRK-GEKSSDFKH 563 (563) T ss_pred cccccccccccccCcccccccc-CcCcccccC Confidence 000000000000 00011 111111111 No 77 >protein:vir:99312 Length: 563 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024471;genbank:gi:48696430;genbank:GeneID:2948040 Probab=99.75 E-value=1.8e-17 Score=112.37 Aligned_cols=449 Identities=10% Similarity=0.043 Sum_probs=225.5 Q ss_pred CCeeecCCCC----cc------Ccccc-chhh----------------hhhhhhhhh---hhhhhhhcccC-HHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGN----PI------RTQQL-REPQ----------------TSRLAGLAK---EFAQHPAKGLT-PAKLARIL 49 (526) Q Consensus 1 m~~~~~~~g~----p~------~~~~~-~~~~----------------~~~~~~~~~---~~~~~~~~~l~-~~~~~~~l 49 (526) +++=++-... || .++.. ..|. +...+..-. .+...+. .++ +..+..+| T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l 88 (563) T protein:vir:99 10 LGKDYGNNSTIAQVPIDEGLQANIKKIEQDNKEYQDLTKSLYGQQQAYAEPFIEMMDTNPEFRDKRS-YMKNEHNLHDVL 88 (563) T ss_pred cccccccccccceeeccCChhhhHhhhhccchhHHHHHhhhccCCCcchhhhHhhhccccccccccc-CCCCcccHHHHH Confidence 3332222111 11 00000 0000 000000000 0000000 011 11222222 Q ss_pred HcccCCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-----------CCceEecCCCC---CHHHHHHHHHHHHHHh- Q lcl|Aclame:pro 50 VEAEQGNLQAQAELFMDMEERDAHLFAEMSKRKRAILG-----------LDWAVEPPRNA---SAAEKADADYLHELLL- 114 (526) Q Consensus 50 ~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~av~~-----------~~w~v~~~~~~---~~~~~~~a~~v~~~l~- 114 (526) + .+. .-+.+.+|+.+|...|.. ..|.|..-..+ ...+.+....++..|. T Consensus 89 ~---------------~~~-~n~i~~~~I~t~~~~vA~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~ 152 (563) T protein:vir:99 89 K---------------KFG-NNPILNAIILTRSNQVAMYCQPARYSEKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVN 152 (563) T ss_pred H---------------Hhh-cchHHHHHHHHHHHHHHHHhhhhhhhcccccceeEEeecCCCcchhhhhhhHHHHHHhhh Confidence 2 222 245666777777766653 34555432211 1111121222333332 Q ss_pred ---c-Cc---CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCceeEecccCCceEE-------eccCCCC Q lcl|Aclame:pro 115 ---D-LE---GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQSWFQLNPEDQNELR-------LRDNSPA 179 (526) Q Consensus 115 ---~-~~---~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~~~~~~~~l~-------~~~~~~~ 179 (526) . .+ .|.+++..++ +.+.+|.+.+|+++.+++. -.|..|.+.++.++++..+....+. ...++.. T Consensus 153 ~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~-G~~~~L~pl~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~ 231 (563) T protein:vir:99 153 TGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNK-TKLEKFIAVDPSTIFYATDKKGKIIKGGKRFVQVVDKRV 231 (563) T ss_pred cCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecCC-CceEEEEEeCCceeEEEECCCCceeccceeEEEEeCCce Confidence 1 11 3567777666 5889999999999887643 3467899999998887655444332 2222333 Q ss_pred ceeecCCCeEEEeecCCCC---ccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCC--CCHHHHHHHHHH Q lcl|Aclame:pro 180 GEALQPFGWIIHRPRARSG---YVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPG--TADEEKATLLRA 254 (526) Q Consensus 180 g~~lp~~k~i~~~~~~~~g---~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~--~~~~e~~~l~~a 254 (526) ...+++...|+|+.....+ .+||.|.+..+...+..-....++...|....|.|--|.+++.+ .++++++++.+. T Consensus 232 ~~~~~~~evI~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~~~~~~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~ 311 (563) T protein:vir:99 232 VASFTSRELAMGIRNPRTELSSSGYGLSEVEIAMKEFIAYNNTESFNDRFFSHGGTTRGILQIRSDQQQSQHALENFKRE 311 (563) T ss_pred eEEecCcceEEEeccCCCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCCCHHHHHHHHHH Confidence 3457777878888766544 67899999999999999999999999999999999888877643 578888888888 Q ss_pred HHHhhc---Ce---EEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhccccc-------ccch--hhhh Q lcl|Aclame:pro 255 VTGLGH---AA---AGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQ-------SGGG--AFAL 319 (526) Q Consensus 255 l~~~~~---~~---~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~-------~~~g--S~a~ 319 (526) +.+.-+ ++ .+|++.|++++=++.+. .-..|.+..++..++|++++..+.--.+..+ +.++ +++. T Consensus 312 ~~~~~~G~~nagk~~~vl~~G~~~~~l~~~~-~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn 390 (563) T protein:vir:99 312 WKSSLSGINGSWQIPVVMADDIKFVNMTPTA-NDMQFEKWLNYLINIISALYGIDPAEIGFPNRGGATGSKGGSTLNEAD 390 (563) T ss_pred HHHHhccccccccceEEcCCCceEEeccCCh-hHHHHHHHHHHHHHHHHHHhCCCHHHccccccccccccccccchhhcc Confidence 887532 23 36779998776665432 2235788888999999999765542221111 1112 2222 Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHH--HHHhCCCcCCH Q lcl|Aclame:pro 320 GQVH-NEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIP--ALVNVGLEIPS 396 (526) Q Consensus 320 ~~vh-~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~--~l~~~G~~v~~ 396 (526) .+.. .......+..-++.|+..||+.|++.+ +. .-+|.|... |.+..++..+ +++..|+ ++. T Consensus 391 ~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~~-----~~------~~~~~f~r~---D~~~~~e~~~~~~~~~~G~-lT~ 455 (563) T protein:vir:99 391 PGKKQQQSQNKGLQPLLRFIEDLVNRHIISEY-----GD------KYTFQFVGG---DTKSATDKLNILKLETQIF-KTV 455 (563) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhc-----cc------ccEEEeccC---CHHHHHHHHHHHHHhcCCc-cCH Confidence 2222 233456778888999999999887642 11 113555433 5555555443 4566776 899 Q ss_pred HHHHHHhCCCCCCccchhcccCCCcccccc----c---cccc---------ccccccccccccccccchHHHHHHHHHHH Q lcl|Aclame:pro 397 AWVYDKLGIPQPAKNEPVLRSAAQPAILSR----Q---HGQR---------VAALATIVGPRYGDQQALDKALADLPAKD 460 (526) Q Consensus 397 ~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~----~---~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (526) +++|+.+|+|+.+.++..+.+....+.... . ...+ .......++...+.....++. ...++ T Consensus 456 NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 532 (563) T protein:vir:99 456 NEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQYNDGKQKERLQMMMSLLEGDNDDSEEGQSTDSSNDDK---EIGTD 532 (563) T ss_pred HHHHHHhCCCCCCCcceeecccccccccccccccCCCccccchhhhhcccccCCCCCCCCCCCCCCCCCCcc---ccccc Confidence 999999999987776655432111000000 0 0000 000000000000000000000 00000 Q ss_pred HHHHHHHHHHHH-----HHHHHhcCCHHHHHH Q lcl|Aclame:pro 461 MQNQANDLLAPL-----LEAVNRGDSETELLG 487 (526) Q Consensus 461 ~~~~~~~~~~~i-----~~~~~~a~s~ee~~~ 487 (526) .+.-.++.+++. .+-++ .+-.+++.. T Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 563 (563) T protein:vir:99 533 AQIKGDDNVYRTQTSNKGQGRK-GEKSSDFKH 563 (563) T ss_pred cccccccccccccCcccccccc-CcCcccccC Confidence 000000000000 00011 111111111 No 78 >protein:vir:7407 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Probab=99.75 E-value=2.3e-17 Score=111.83 Aligned_cols=377 Identities=10% Similarity=0.011 Sum_probs=217.0 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+ |.+..-+ + ...+.+..+ ..+...+..+. +...+.... |. .+......+-+.|.+|+.. T Consensus 3 m~-~~~~~~~----~-~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~-g~-----~v~~~~al~~~~v~~~v~~ 62 (392) T protein:vir:74 3 LP-ILNFINQ----T-NDPPEAGSV-------QSYFPDGNDAQ-IMESLLGDN-NE-----WVSARAALRNSDLFSIILQ 62 (392) T ss_pred ch-hhhhhhc----c-cCccccccc-------ccccccCchhh-hhhhccCCC-Cc-----ccchhhhhcchHHHHHHHH Confidence 55 4432211 1 111111111 11111111111 122221111 11 1111222367899999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCc Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQS 159 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~ 159 (526) +-..|.++++.+..... ..+++..-..+ ...++++.+. +.+.+|.++++++++.+| .+..|.+.++. T Consensus 63 ia~~ia~lp~~~~~~~~--------~~l~~~PN~~~-t~~~f~~~~~~~lll~Gna~~~i~r~~~G---~~~~L~~i~~~ 130 (392) T protein:vir:74 63 LSSDLAIVKINAEKKKN--------QGIIDNPSTNA-NKHGFWQSMFAQLLLGGEAFAYRWRNANG---ADMKWEYLRPS 130 (392) T ss_pred HHHhhccCceeeccchh--------hhhhhhcCCCC-CHHHHHHHHHHHhhhcCCEEEEEEECCCC---cEEEEEEEcCc Confidence 99999999998873211 11222221112 2456666655 678899999999886544 26689999998 Q ss_pred eeEecccC-CceEEec--cCCCC---ceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCc Q lcl|Aclame:pro 160 WFQLNPED-QNELRLR--DNSPA---GEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLP 233 (526) Q Consensus 160 ~f~~~~~~-~~~l~~~--~~~~~---g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P 233 (526) ++.+..+. +..+.++ ..... -..+++...+++++....+..+|.|.+..+...+-.-....++...+....+.| T Consensus 131 ~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p 210 (392) T protein:vir:74 131 QVNTYYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNV 210 (392) T ss_pred eeEEEEcCCCceEEEEEEecCCccceeEEEcCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCC Confidence 87766543 2233322 22111 134677776666655556668999999999999999999999999999999999 Q ss_pred eEEEecCCCC--CHHHHHHHHHHHHHhhc-CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccc Q lcl|Aclame:pro 234 IRLGKYPPGT--ADEEKATLLRAVTGLGH-AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTS 310 (526) Q Consensus 234 ~~vgk~~~~~--~~~e~~~l~~al~~~~~-~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~ 310 (526) --+.+++.+. +++++..+.+......+ ...+|++.|++++-++.+. .-..|.+..++..++|++++..+.-..+.. T Consensus 211 ~~il~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~-~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~ 289 (392) T protein:vir:74 211 PGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKS-NVAQLLSQTDWTSKQYAKVYGLPDSYIGGQ 289 (392) T ss_pred ceEEEeCCCCCchHHHHHHHHHHHhccccCCCeeecCCCceEEEccCCh-hHHHHHHHHHHHHHHHHHHhCCCHHHhCCC Confidence 9999997654 34455666666555433 3468889999888776432 333577888999999999986664333211 Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhC Q lcl|Aclame:pro 311 QSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNV 390 (526) Q Consensus 311 ~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~ 390 (526) +.+++..+........-+.--++.|++.+|+.|.+.+ .+| +...-..|...+++.+.+++.. T Consensus 290 ---~~~~~~~e~~~~~~~~~l~p~~~~ie~~l~~~l~~~~-~~~--------------~~~~~~~d~~~~~~~~~~l~~~ 351 (392) T protein:vir:74 290 ---GDQQSSIQQISGMYASALNRYLRPAISELEYKLSDHI-SVN--------------MRPAIDPLGDNYLSTISTATRW 351 (392) T ss_pred ---CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh-ccc--------------chhhhcCCHHHHHHHHHHHHhC Confidence 1112222222333455667788888888888775432 111 1122234667888999999998 Q ss_pred CCcCCHHHHHHHh---CCCCCCccchhcccCCCccccccccccccccccccccc Q lcl|Aclame:pro 391 GLEIPSAWVYDKL---GIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGP 441 (526) Q Consensus 391 G~~v~~~~~~e~~---Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (526) |+ ++.+++|+.+ |+. |.+ +......++.+ .+ ....+.+ T Consensus 352 g~-~t~near~~~~~~g~~-pne---~r~~enl~~~~---~G-----d~~~p~p 392 (392) T protein:vir:74 352 GA-LAENQATFVLQEAGYI-PKD---LPAPENTNKKT---TG-----QSNEPVP 392 (392) T ss_pred CC-cCHHHHHHHHHhCCCC-ccc---cchhcCCCCCC---CC-----CCCCCCC Confidence 87 8888888876 554 211 11000000000 00 0000000 No 79 >protein:vir:4156 Length: 542 # NCBI annotation: portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046965;genbank:gi:9630535;genbank:GeneID:1261709 Probab=99.75 E-value=2.1e-16 Score=106.53 Aligned_cols=461 Identities=12% Similarity=0.132 Sum_probs=226.4 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+ |.+- .+.++.+.............+..| +... -++..+.. +....+.|.+|+.. T Consensus 6 ~~-i~s~----~~~~~i~~~~~~s~~~~~~~~~~~-------------~~pp--~~~~~la~----l~~~n~~v~scI~~ 61 (542) T protein:vir:41 6 LS-IRSL----EKYKAIKREEVESQALGETRFEEY-------------VEPK--VNPLVLLS----LLQVNPYHASACSI 61 (542) T ss_pred cc-cccc----ccchhhhhccccccccccccCCcc-------------ccCC--CCHHHHHH----HHhhcHHHHHHHHH Confidence 22 2221 111111111111000000000011 1100 12333333 44579999999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHH-hcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecC Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELL-LDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQ 158 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l-~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~ 158 (526) +...|.+++|.+..... +. +...+ +....+.+++..++ +.+.+|.+.++++++..| .+..|.+.++ T Consensus 62 ia~~IA~l~~~~~~~~~-----~~----l~~~lpN~~~s~~~f~~~~v~~lll~Gnayi~i~rd~~G---~~~~L~~l~~ 129 (542) T protein:vir:41 62 KANDIIRTGYILEGDDE-----GV----VDEFIRACKPSFEYVLLRALEDLQVFNYCTLEVVRDDRG---DPIRFEYIPS 129 (542) T ss_pred HHHHHhhCceeeecccc-----hh----hhhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCC---cEEEEEEEcC Confidence 99999999999974321 11 12222 22234667777777 678899999999876554 3667888888 Q ss_pred ceeEecccCCceEEeccC-------------------CCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHH Q lcl|Aclame:pro 159 SWFQLNPEDQNELRLRDN-------------------SPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYA 219 (526) Q Consensus 159 ~~f~~~~~~~~~l~~~~~-------------------~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~ 219 (526) .+++...++.....+... +..+..+++...|++++....+.+||.|.+..+......-... T Consensus 130 ~~v~v~~d~~~~~~~~~~~~~~~~~~y~~~~~~~~~~g~~~~~~~~~eIiHir~~~~~~~~~Glspi~~~~~~i~~~~~~ 209 (542) T protein:vir:41 130 HTIRVHKDGSRYRQTWDGVNITHFKDYRYEGEINPETGEDQDSVGANELVFIHIPSPVCSYYGVPRYVSAAPAILAMQKI 209 (542) T ss_pred cceEEEEcCCeeEeeecCCcceeEEeecccccccccccccccccCcccEEEecCCCCCCCcccccHHHHHHHHHHHHHHH Confidence 887776554432222111 1112235555655555555577889999999999998888899 Q ss_pred HHHHHHHHHHcCCceEEEecCCC----------CCHHHHHHHHHHHHHh----hcC--eEEEec--C--CceEEEeecC- Q lcl|Aclame:pro 220 TSDLAEMLEIYGLPIRLGKYPPG----------TADEEKATLLRAVTGL----GHA--AAGIIP--E--TMAIDFQQAA- 278 (526) Q Consensus 220 ~~~w~~f~E~~G~P~~vgk~~~~----------~~~~e~~~l~~al~~~----~~~--~~~iip--~--~~~ie~~~a~- 278 (526) .++-..|....+.|--|.+++.. .++++++.+.+.+.+. ..+ ..+|++ . +..++|...+ T Consensus 210 ~~~~~~~f~Ng~~p~gIL~~~~~l~de~~~~~~~~~e~~~~lk~~~~~~~~g~~~n~gk~~vL~~~~~~~~g~~~~pl~~ 289 (542) T protein:vir:41 210 DEYNYAFFDNYTIPSYVITVTGEFEDELEEDPDGNPTGRTVIQALIEDNFKHLKEAPHTPLVFSIPGGDTVKVTFTPLNT 289 (542) T ss_pred HHHHHHHHhccCCccEEEEeCCccccccccccccCHHHHHHHHHHHHHHHhhhhcccCceeEeeccCCcccceeEEEcCC Confidence 99999999999999888877632 3455555555555432 222 345553 1 2234555433 Q ss_pred CCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 279 QGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEV-RHDLLASDARQLAATLSRDLLWPLLVLNRPG 357 (526) Q Consensus 279 ~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v-~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~ 357 (526) +..-..|.+..++..++|++++..+.--.+..++++.+++..+..... ....+...++.|+..||+.|.+.. . T Consensus 290 ~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~t~n~sn~Eq~~~~f~~~tL~P~~~~ie~~ln~~L~~~~-----~- 363 (542) T protein:vir:41 290 SQKELSFREYAAEKKYDIAAAHMIDPYRLGIADTGPLGGNFAEVTRRTYYESVVRPQQNIISSILTDFFQVKF-----N- 363 (542) T ss_pred ChhHHHHHHHHHHHHHHHHHHhCCCHHHhCcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-----C- Confidence 222345778888899999999866643333222222222333433333 467778899999999998765432 1 Q ss_pred CCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHh-CCCCCCccchhcccCCCccc------ccccccc Q lcl|Aclame:pro 358 SPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKL-GIPQPAKNEPVLRSAAQPAI------LSRQHGQ 430 (526) Q Consensus 358 ~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~-Glp~~~~~e~~~~~~~~~~~------~~~~~~~ 430 (526) .. -+|+|....-.. ....+.+.++++.|+ ++.+++|+.+ |+++. ++..+.+...... .+..... T Consensus 364 ---~~--~~~~f~~~~ll~-~d~~~~~~~~v~~Gi-lT~NE~Re~L~g~~pg--dd~~l~p~~~~~~~~~~~~~n~~~~~ 434 (542) T protein:vir:41 364 ---PK--TRFKFNDETLLE-SDSVRNCALLVQSGV-LTPAEARERLFGLDGG--PDIFMVPSKGAAKSVKRQERNYEKNQ 434 (542) T ss_pred ---Cc--eEEEecchhhcc-hHHHHHHHHHHhCCC-CCHHHHHHhhCCCCCC--CccccccccccccccccCCcCCCCCc Confidence 11 145555432211 234556677889997 8999999874 77542 2222221110000 0000000 Q ss_pred ----ccccccc---ccc------cccccccchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhcCC--------HHH Q lcl|Aclame:pro 431 ----RVAALAT---IVG------PRYGDQQALDKALADLPAKDMQNQANDLLA-----PLLEAVNRGDS--------ETE 484 (526) Q Consensus 431 ----~~~~~~~---~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~a~s--------~ee 484 (526) ....... ... +........++.... ...++.+..+.|+- --..++.++-| +|- T Consensus 435 ~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (542) T protein:vir:41 435 IREIRKIYAKYRPRFNEIISSKLSAEEKKKKIDESLAE-FRAEAYEAGKKMLIIGGDMGSMSALNQGVSVIPSKPLNLER 513 (542) T ss_pred hhhhhhcccccCccccccccccccchhhcccccchhhh-hHHhHHhcCceEEEeecCchhhhhhhccceeccCCCcChHH Confidence 0000000 000 000000000000001 11111111111110 01122222211 121 Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhHH Q lcl|Aclame:pro 485 LLGALAEAFPDMDDSALTDALHRLLFAADTWGRL 518 (526) Q Consensus 485 ~~~~L~~l~~~l~~~~l~~~l~~a~~~A~l~G~~ 518 (526) ..+.|.+ +.+++...+.--++.--.|-.+ T Consensus 514 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 542 (542) T protein:vir:41 514 YEELLEA-----SVEDMIGRIRHYLYKVIGWREL 542 (542) T ss_pred HHHHHHh-----hHHHHHHHHHHHHHHHhhhccC Confidence 1111222 2233333332233322222222 No 80 >protein:vir:104259 Length: 403 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006980;genbank:gi:46401881;genbank:GeneID:2777676 Probab=99.75 E-value=8e-17 Score=108.83 Aligned_cols=374 Identities=11% Similarity=0.010 Sum_probs=215.4 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCC----C--HHHHHHHHHHHHhccHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQG----N--LQAQAELFMDMEERDAHL 74 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g----~--~~~~~~l~~~m~~~D~~v 74 (526) |+ |.+.... .++|.+ ++++..+.- + .....+-| .+-+.| T Consensus 1 mg-~~~~~~~----------------------------~~~~~~--~~~~~~~~~~~~~~~~~~~t~~~~----~~~~~v 45 (403) T protein:vir:10 1 MG-FKSWITE----------------------------KLNPGQ--RIIRDMEPVSHRTNRKPFTTGQAY----SKIEIL 45 (403) T ss_pred Cc-chhhhhh----------------------------ccchhh--hhhhcccccccccCCcccccHHHH----HHHHHH Confidence 44 3333322 222221 111111100 0 00001111 146789 Q ss_pred HHHHHHHHHHHhcCCceEecCCCCCHH-HHHHHHHHHHHHhcCcC----HHHHHHHHH-HhhhhcceeeeEEEeecCCee Q lcl|Aclame:pro 75 FAEMSKRKRAILGLDWAVEPPRNASAA-EKADADYLHELLLDLEG----LEDLLLDAL-DGIGHGYSCIELEWALQGREW 148 (526) Q Consensus 75 ~s~l~~Rk~av~~~~w~v~~~~~~~~~-~~~~a~~v~~~l~~~~~----~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~ 148 (526) .+|+......|.+++|.|......... ......-+...|+..|+ ..++.+.+. +.+++|.+++++. +. T Consensus 46 ~~cv~~Ia~~ia~~p~~v~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gnayi~~~----~~-- 119 (403) T protein:vir:10 46 NRTANMVIDSAAECSYTVGDKYNIVTYANGVKTKTLDTLLNVRPNPFMDISTFRRLVVTDLLFEGCAYIYWD----GT-- 119 (403) T ss_pred HHHHHHHHHHHhhCceeEeecccccccccccccchHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEe----Cc-- Confidence 999999999999999998643321111 11111223344544332 345665555 6778998876542 22 Q ss_pred EEeeeeeecCceeEecccCCceEEeccCCCCceeecCCCeEEEeecC----CCCccccchhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 149 MPLAFHHRPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRA----RSGYVARSGLFRVLAWPYLFRHYATSDLA 224 (526) Q Consensus 149 ~~~~l~~r~~~~f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~----~~g~p~g~gLl~~~~~~~~fK~~~~~~w~ 224 (526) .+.+.|+..+....+....+.... ...+..+++...++++... ..+.++|.+.+..+....-.-....++-. T Consensus 120 ---~l~~l~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~eiih~~~~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~ 195 (403) T protein:vir:10 120 ---SLYHVPAALMQVEADANKFIKKFI-FNNQINYRVDEIIFIKDNSYVCGTNSQISGQSRVATVIDSLEKRSKMLNFKE 195 (403) T ss_pred ---eeEeecCcceEEEEcCCceEEEEE-ecCceeecccceEEecccccccCCCCCcccccHHHHHHHHHHHHHHHHHHHH Confidence 344566666665544444333222 2234445555544444221 24678999999999988888888888888 Q ss_pred HHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHhhc-----CeEEEecCCceEEEeecCCC-ChHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 225 EMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGH-----AAAGIIPETMAIDFQQAAQG-SSEPFLAMMRQSEDAISK 298 (526) Q Consensus 225 ~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~-----~~~~iip~~~~ie~~~a~~~-~~~~~~~li~~~d~~Isk 298 (526) .|...-+.|--|.+++...++++++++.+.+.+.-+ ...+|++.|++++.++.... .-..|.+..++..++|++ T Consensus 196 ~~f~ng~~~~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~ 275 (403) T protein:vir:10 196 KFLDNGTVIGLILETDEILNKKLRERKQEELQLDYNPSTGQSSVLILDGGMKAKPYSQISSFKDLDFKEDIEGFNKSICL 275 (403) T ss_pred HHHhccCCcceEEEeCCCCCHHHHHHHHHHHHHHhCCcccCcceeecCCCceeEEecccCCHHHHHHHHHHHHHHHHHHH Confidence 888888899999999998999999998888876532 23688999999887763222 123577888899999999 Q ss_pred HHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCc----cc Q lcl|Aclame:pro 299 AVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLR----EQ 374 (526) Q Consensus 299 ~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~----e~ 374 (526) ++..+..-.+.+ . +|. ..+........-+.-.++.|++.||+.|. ++|.|+.. -. T Consensus 276 ~fgVPp~~lg~~--~-~sn-~e~~~~~f~~~tl~P~~~~ie~~l~~~L~-----------------~~~~~d~~~~~~l~ 334 (403) T protein:vir:10 276 AFGVPQVLLDGG--N-NAN-IRPNIELFYYMTIIPMLNKLTSSLTFFFG-----------------YKITPNTKEVAALT 334 (403) T ss_pred HhCCCHHHcCCC--C-CcC-HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----------------ceeeeccchhhhcc Confidence 987676544321 1 221 12223334556677788888888887551 13444432 23 Q ss_pred cCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCc--cchhcccCCCc-cccccccccccccccccccccccccc Q lcl|Aclame:pro 375 ADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAK--NEPVLRSAAQP-AILSRQHGQRVAALATIVGPRYGDQQ 447 (526) Q Consensus 375 edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~--~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (526) .|.+.+++++.++++.|+ ++.+++|+.+|+|+-.+ .+....+.... ...+...+. .+ .+......+ T Consensus 335 ~D~~~~~~~~~~~~~~G~-lT~NE~R~~~gl~pi~~~~~d~~~~p~n~~~~~~~~~~~e-~~-----~~~~~~~g~ 403 (403) T protein:vir:10 335 PDKEAEAKHLTSLVNNGI-ITGNEARSELNLEPLDDEQMNKIRIPANVAGSATGVSGQE-GG-----RPKGSTEGD 403 (403) T ss_pred cCHHHHHHHHHHHHhCCC-cCHHHHHHHhCCCCCCcccccccccccccccccccCCCCc-CC-----CCCCCcCCC Confidence 578899999999999998 99999999999987532 22222111110 000110010 00 001111111 No 81 >protein:vir:6210 Length: 394 # NCBI annotation: Portal protein # Family: family:all:10882 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852590;genbank:gi:31415850;genbank:GeneID:1489208 Probab=99.75 E-value=4e-17 Score=110.46 Aligned_cols=379 Identities=11% Similarity=0.048 Sum_probs=214.1 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+ |++..-+-+. +... ... .....+...+. . .|.. +..+...+-+.|.+|+.. T Consensus 1 MG-l~~~~~~~~~-~~~~---~~~--~~~~~~~~~~~-------------~--~~~~-----vt~~~al~~~~v~~~i~~ 53 (394) T protein:vir:62 1 MG-LRDRFSNYLF-KKAE---KRG--YLDNVLGKSIR-------------Y--SGVY-----VTDSNILQSSDVYELLQD 53 (394) T ss_pred Cc-hhhhhhhhcc-CCCC---chh--hhhhhhhcccc-------------c--Cccc-----cChhhhhccHHHHHHHHH Confidence 88 6665422221 1111 000 00001100000 0 0000 001111246789999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeee Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHH 155 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~ 155 (526) +...|.+++|.|...++.... ...+..++. .| ...+++..+. +.+.+|.+++.+. .+ ....+..+. T Consensus 54 Ia~~iA~lp~~v~~~~g~~~~----~~~~~~Ll~-~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~--~~-~~~~~~~~~- 124 (394) T protein:vir:62 54 ISNQMVLADIVVEDEFGNEIK----DDIALQILR-NPNNYLTQSEFIKLMTNTYLLEGETFPILN--GA-QIHLASNVF- 124 (394) T ss_pred HHHhhcccceEEEcCCCcccc----hhhHHHHhc-cCCCCCCHHHHHHHHHHHHHhcCCeEEEEe--cc-eeeccccce- Confidence 999999999999854332111 122223332 23 2345555444 5788999988873 11 111121111 Q ss_pred ecCceeEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceE Q lcl|Aclame:pro 156 RPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIR 235 (526) Q Consensus 156 r~~~~f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~ 235 (526) +..++.....+.. .+..+++...++.++.. .+..+|.|.+..+....-.-....++...+....|.|-- T Consensus 125 -------~~~~~~~~~~~~~---~~~~~~~~eiih~r~~~-~d~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~ 193 (394) T protein:vir:62 125 -------TELDDNLVEHFNI---GGHEIPPCMIRHVKNIG-ADHLRGKGILDLGRDTLEGVMSAEKTLTDKYKKGGLLTF 193 (394) T ss_pred -------EEECCceEEEEee---CCEEechhheEEecCcC-CCCccccChHHHHHHHHHHHHHHHHHHHHHHHccCCcce Confidence 1122222222222 34567877766655544 455789999999998887888888888899999999999 Q ss_pred EEecCCCCC--HHHHHHHHHHHHHhhc-----CeEEEecCCceEEEeecCCCC-hHHHHHHHHHHHHHHHHHHhchhhhc Q lcl|Aclame:pro 236 LGKYPPGTA--DEEKATLLRAVTGLGH-----AAAGIIPETMAIDFQQAAQGS-SEPFLAMMRQSEDAISKAVLGGTLTS 307 (526) Q Consensus 236 vgk~~~~~~--~~e~~~l~~al~~~~~-----~~~~iip~~~~ie~~~a~~~~-~~~~~~li~~~d~~Isk~ilGqtltt 307 (526) +.+++...+ ++.++++.+++.+.-. +..+|+|.|+++++...+... -..|.+..++..++|++++..+.... T Consensus 194 il~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l 273 (394) T protein:vir:62 194 LLNLDAHINPQNGAQSKLINAILDQLESIDEARSVKMIPLGKGYSIDTLKSPLDDEKTLAYLNVYKKDLGKFLGINVDTY 273 (394) T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhccccccCceeEeeCCCceeEEecCCCcchHHHHHHHHHHHHHHHHHhCCCHHHc Confidence 999876554 4445666666655422 345789999988887654322 23467777888999999987766444 Q ss_pred ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHH Q lcl|Aclame:pro 308 TTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPAL 387 (526) Q Consensus 308 ~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l 387 (526) +.. .+|. ..+........-+.-.++.|+..||+.|+.+- . ...-+|+|+...-.+....++.+.++ T Consensus 274 g~~---~~sn-~e~~~~~~~~~~l~P~~~~ie~~l~~kll~~~--------~--~~~~~~~fd~~~~~~~~~~~~~~~~~ 339 (394) T protein:vir:62 274 TEL---IKED-IEKAMMYIHNKAVRPIMKNFEDHLSLLFYAQN--------S--GKRIKFKINILDFVTYSNKTNIGYNL 339 (394) T ss_pred CCC---CCcC-HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcc--------c--cCceEEEechhhhcCHHHHHHHHHHH Confidence 211 1222 12223334456778888889988887765321 1 11236788877777788889999999 Q ss_pred HhCCCcCCHHHHHHHhCCCCCC--ccchhcccCCCcccccccccccccccccccccccccccc Q lcl|Aclame:pro 388 VNVGLEIPSAWVYDKLGIPQPA--KNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQA 448 (526) Q Consensus 388 ~~~G~~v~~~~~~e~~Glp~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (526) ++.|+ ++.+++|+.+|+|+.. .++....+. .-.+.............+ ...+. T Consensus 340 ~~~g~-~T~NE~R~~~gl~p~~~~~gd~~~~~~-n~~~~~~~~~~~~~~kgg------e~~en 394 (394) T protein:vir:62 340 VRTAI-TSPDNVADMLGFPKQNTKESQAIYISN-DVTEIGKKEATDGSLGGG------EENEN 394 (394) T ss_pred HhCCC-cCHHHHHHHhCCCCCCCCCCCeeeccc-ccccccccccccccCCCC------CCCCC Confidence 99997 9999999999999753 333332221 111111111100000000 00011 No 82 >protein:vir:4854 Length: 386 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049394;genbank:gi:9632422;genbank:GeneID:1258515 Probab=99.74 E-value=1.5e-17 Score=112.79 Aligned_cols=377 Identities=9% Similarity=0.029 Sum_probs=224.1 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+ +.+...+. +. .+.. +..+.. .++-..+...+. .|.. +......+-+.|.+|+.. T Consensus 1 M~-~f~~~~~~---~~--~~~~-~~~~~~---------~~~~~~~~~~~~---~~~~-----v~~~~~~~~~~v~~~i~~ 56 (386) T protein:vir:48 1 MP-IFNITNLA---TE--SPPI-SQGGFF---------DITDPDFLSTLN---GSEW-----VSAESALRNSDLFSIINQ 56 (386) T ss_pred Cc-cccccccc---cc--cccc-cccccc---------ccccchhccccc---CCce-----echhhhhcchHHHHHHHH Confidence 87 45432111 11 0100 000000 000011111111 1110 111112368899999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCc Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQS 159 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~ 159 (526) +...|.++++.+.... ...+....-..+ ...++++.++ +.+.+|.++++++++..+ .+..|.+.++. T Consensus 57 ia~~ia~~p~~~~~~~--------~~~l~~~pN~~~-t~~~f~~~~~~~lll~Gna~~~i~r~~~g---~~~~L~~l~~~ 124 (386) T protein:vir:48 57 LSNDLATVKLTASRKQ--------LQGIIDNPSNNA-NRFNFYQSIFAQMLLGGEAFAYRWRNENG---RDMKWEYLRPS 124 (386) T ss_pred HHHhhccCceeeccch--------hHHHhhcCCCCC-CHHHHHHHHHHHhhhcCcEEEEEEECCCC---cEEEEEEecCc Confidence 9999999999886321 111222221122 3456777666 678899999999886543 46789999999 Q ss_pred eeEecccCC-ceEEecc---CCC--CceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCc Q lcl|Aclame:pro 160 WFQLNPEDQ-NELRLRD---NSP--AGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLP 233 (526) Q Consensus 160 ~f~~~~~~~-~~l~~~~---~~~--~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P 233 (526) +++...+.. ..+.++- +.. ....+++...++.++....+.++|.|.+..+....-.-....++...+.+..|.| T Consensus 125 ~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~ 204 (386) T protein:vir:48 125 QVSFNRLDNKDGIYYNITFDDPRIPPKQHVPQGDVLHFKLLSVDGGLTSVSPLMALSRELNIQKASDKLTLNSLKNALNA 204 (386) T ss_pred eeEEEEcCCCceEEEEEEecCccccceeEecCccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCc Confidence 888765432 2333321 111 1234777777766666666668999999999988888888889999999999999 Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHhhcCe--EEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhccccc Q lcl|Aclame:pro 234 IRLGKYPPGTADEEKATLLRAVTGLGHAA--AGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQ 311 (526) Q Consensus 234 ~~vgk~~~~~~~~e~~~l~~al~~~~~~~--~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~ 311 (526) --+.+++...+++++.++.+....+..++ .+|++.|++++-+..+ .....|.+..++..++|++++..+..-.+. T Consensus 205 ~~ii~~~~~~~~e~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~-~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~-- 281 (386) T protein:vir:48 205 NGILKIKGGGLLDFKTKLSRSRQAMKQMQGGPLVLDDLEEFTPLEIK-SNVSQLLKQADWTTGQFAKVYGIPENVVGG-- 281 (386) T ss_pred ceEEEeCCCCCHHHHHHHHHHHHHhhcCCCCceecCCCceEEEcCCC-hhHHHHHHHHHHHHHHHHHHhCCCHHHhCC-- Confidence 99999999999999888887777766664 5677888776666432 222347788889999999998666543321 Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 312 SGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVG 391 (526) Q Consensus 312 ~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G 391 (526) .+.+|.+ .+........-+.--++.|+..||+.|++.+ .++. ......|...++..+.+|+..| T Consensus 282 ~~~~~~~-e~~~~~~~~~~l~P~~~~ie~~l~~~l~~~~-~~~~--------------~~~~~~d~~~~~~~~~~l~~~g 345 (386) T protein:vir:48 282 QGDQQSS-LEMSLDLYNKAVSRYLRPFLSELSQKLSCDV-DADI--------------LPAVDPTGSNSVSRINSMVKSG 345 (386) T ss_pred CCCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcchh-hcch--------------hhhhccChHHHHHHHHHHHhCC Confidence 1122221 2222334556677778889999998876532 1111 1112235566778888999988 Q ss_pred CcCCHHHHHHHhCCCCCCccchhcccCCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 392 LEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQ 447 (526) Q Consensus 392 ~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (526) + ++.+++|+.+|.++-..++.-........ +...+ ....++ T Consensus 346 ~-~t~nE~r~~lg~~~~~~~~~~~~~~~~~~--~~~gG------------d~~~~~ 386 (386) T protein:vir:48 346 T-LAQNQGLYILQQAEILPKELPEGENPNKT--TLKGG------------EINGED 386 (386) T ss_pred C-cCHHHHHHHhhcCCCCCccchhhcCCCCC--ccCCC------------CCCCCC Confidence 7 99999999999865433331110000000 00000 000000 No 83 >protein:vir:4194 Length: 540 # NCBI annotation: putative portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071819;genbank:gi:11863102;genbank:GeneID:1257604 Probab=99.73 E-value=7.4e-16 Score=103.55 Aligned_cols=459 Identities=14% Similarity=0.140 Sum_probs=234.9 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+. -..+++...+.... ++.+..- + +..|...-+ ++..+. .+....+++.+|+.. T Consensus 6 ~~~--~~~~~~~~~~~~~~--~~~~~~~-~-~~~~~~pp~---------------~~~~La----~~~~~n~~v~scI~~ 60 (540) T protein:vir:41 6 LSI--KSLEKYRAIKGDTD--SQALKED-R-FEEYVEPKV---------------HPLVLL----SLLQVNPYHASACSI 60 (540) T ss_pred cCh--hhccchhhhhcccc--ccccccC-C-CCccccCCC---------------CHHHHH----HHHHhcHHHHHHHHH Confidence 664 33444422211111 1111100 0 001100001 222222 333468999999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCc Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQS 159 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~ 159 (526) +...|.+.+|.|...... ..+++ -+....+.+++..++ +.+.+|.++++++++..| .+..|.+.++. T Consensus 61 ia~~ia~~~~~i~~~~~~------~~~~l---pN~~~t~~~f~~~~v~dlll~Gnayv~i~r~~~G---~~~~L~~i~~~ 128 (540) T protein:vir:41 61 KANDILRTGYLIDGDDGG------VEELL---RACRPSFEFILLQALEDLQVFNYCTLEVVRDDQG---EPVRLDYIPAH 128 (540) T ss_pred HHHHHhcCCceEecCccc------hhhhc---cCCCCCHHHHHHHHHHHHHhcCCeEEEEEECCCC---cEEEEEEeCCc Confidence 999999999999854321 22222 122234677777777 578899999999886544 35678888887 Q ss_pred eeEecccCCceEEecc-------------------CCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 160 WFQLNPEDQNELRLRD-------------------NSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYAT 220 (526) Q Consensus 160 ~f~~~~~~~~~l~~~~-------------------~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~ 220 (526) +++...++...+.+.+ .+.....+++...|+.+.....+.+||.|.+..+......-.... T Consensus 129 ~V~v~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~eViHir~~~~~~~~~G~Spi~~~~~~i~~~~~~~ 208 (540) T protein:vir:41 129 TVRVHRDGSRYMQTWDGIHVTYFKDYRYEGEVNPDNGEDQDGVGANEIIFIHLPSPICSYYGVPRYLSAAPSILAMQKID 208 (540) T ss_pred ceEEeEcCceeEeeecCceeeeeecccccceeeccccccceeecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHH Confidence 7765544332222111 111123456666555544555678899999999999999999999 Q ss_pred HHHHHHHHHcCCceEEEecCCCCCHHH------H----HHHHHHHHH----hhcCe--EEEec------CCceEEEeecC Q lcl|Aclame:pro 221 SDLAEMLEIYGLPIRLGKYPPGTADEE------K----ATLLRAVTG----LGHAA--AGIIP------ETMAIDFQQAA 278 (526) Q Consensus 221 ~~w~~f~E~~G~P~~vgk~~~~~~~~e------~----~~l~~al~~----~~~~~--~~iip------~~~~ie~~~a~ 278 (526) ++-..|....+.|--|.+++...+++. . +.+.+...+ ...++ .+|++ .|++++=++. T Consensus 209 ~~~~~~f~Ng~~p~giL~~~g~l~~e~~~~~~~~~~~~~~~~~~~~~~~~g~~~nag~~~vLe~~~~~~~g~~~~pl~~- 287 (540) T protein:vir:41 209 EYNYAFFDNYTIPSYVITVTGEFEDEMELGSDGEPTGRTVLQGLIEDNFKYLKEAPHTPLVFSIPGGDTVEVTFTPLNT- 287 (540) T ss_pred HHHHHHHhccCCCceEEEeCcccCchhccchHHHHHHHHHHHHHHHHHhccccccccceEEEecCCCcccceeEEeccc- Confidence 999999999999998888875443321 2 222222222 22222 34543 3444443432 Q ss_pred CCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 279 QGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHN-EVRHDLLASDARQLAATLSRDLLWPLLVLNRPG 357 (526) Q Consensus 279 ~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~-~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~ 357 (526) +..-..|.+..++..++|++++..+.--.+..++++++++..+... ......+...++.|+..||+.|++.+ +. T Consensus 288 ~~~d~qfle~~~~~~~eIa~afgVPp~~lG~~~~~~~n~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~L~~~~-----~~ 362 (540) T protein:vir:41 288 SQKELSFREYAAEKKHDIAAAHMIDPYRLGITDVGPLGGNFAEVARRTYYESVVRPQQEIVSSVLTDFIQLKL-----DP 362 (540) T ss_pred chhHHHHHHHHHHHHHHHHHHhCCCHHHcCcccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-----CC Confidence 2233458888999999999998766544432222233344334333 33567788999999999998765421 11 Q ss_pred CCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHh-CCCCCCccchhcccCCCcc-c----------cc Q lcl|Aclame:pro 358 SPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKL-GIPQPAKNEPVLRSAAQPA-I----------LS 425 (526) Q Consensus 358 ~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~-Glp~~~~~e~~~~~~~~~~-~----------~~ 425 (526) . -+|+|+...-.+ ...++.+.++++.|+ +|.+++|+.+ |+++. ++..+.+..... . .. T Consensus 363 ----~--~~i~f~~~~ll~-~D~~~~~~~lv~~G~-lT~NE~Re~L~g~e~g--dd~~l~p~n~~~~~~~~~~~~~~~~~ 432 (540) T protein:vir:41 363 ----G--ARFVFNEEILME-SEFVHNYALLVQCGV-LTPSEVREKLFGLDGG--PDMFMVPSSIGKSAMKRQKRNYEKNQ 432 (540) T ss_pred ----c--eEEEecchhhcc-hHHHHHHHHHHhCCC-CCHHHHHHHhCcCcCC--CcccccccccccccccccccccCCCC Confidence 1 246676554333 245667788999998 9999999865 76542 232222111000 0 00 Q ss_pred ccccccccccc--------cccccccccccchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhcC--------CHHH Q lcl|Aclame:pro 426 RQHGQRVAALA--------TIVGPRYGDQQALDKALADLPAKDMQNQANDLLAPL-----LEAVNRGD--------SETE 484 (526) Q Consensus 426 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~~a~--------s~ee 484 (526) .....+..... ....+....+..+++.+.+. .++.++..+.++.=+ ..++.++- .+|. T Consensus 433 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (540) T protein:vir:41 433 INEIKRTYAKYKPRIQEIISSESPLEDKKKKIDEVLSDF-RAEAYENGKKMLSIAGDMGTMSAINRGVSMIPPKPSNLEA 511 (540) T ss_pred ccccccccchhcccccCcccccccccccccccccccccc-CCccccchhHHHHHhhhhhhhhhhhcCceecCCCCcchHH Confidence 00000000000 00001111112222222111 112222222222111 12222221 1222 Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhHH Q lcl|Aclame:pro 485 LLGALAEAFPDMDDSALTDALHRLLFAADTWGRL 518 (526) Q Consensus 485 ~~~~L~~l~~~l~~~~l~~~l~~a~~~A~l~G~~ 518 (526) ..+.|.+ +.+++...+.--++.--.|-.+ T Consensus 512 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 540 (540) T protein:vir:41 512 YEDLLAA-----SVDDIVERIRHYLYKVIGWREL 540 (540) T ss_pred HHHHHHh-----hHHHHHHHHHHHHHHHhhhccC Confidence 2222222 3444444444444433333333 No 84 >protein:vir:9507 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835554;genbank:gi:30043953;genbank:GeneID:1260535 Probab=99.72 E-value=1.5e-16 Score=107.28 Aligned_cols=379 Identities=11% Similarity=-0.013 Sum_probs=197.1 Q ss_pred ecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHHHHHH Q lcl|Aclame:pro 5 VDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSKRKRA 84 (526) Q Consensus 5 ~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~a 84 (526) -+-+-+.++.+ -.+..+. +......++..-..+-+.|.+|+..+-.. T Consensus 1 Mg~f~~lf~~~------------------------~~~~~~~---------~~~~~~~v~~~~~~~~~~v~~~i~~Ia~~ 47 (395) T protein:vir:95 1 MSILEKIFKTR------------------------KDITYML---------DLDMIEDLSQQAYVKRLAIDSCIEFVARA 47 (395) T ss_pred CchhhhhhccC------------------------ccccccc---------cchhccccchhhhhhhHHHHHHHHHHHHh Confidence 11111111110 0000000 01111122222122578999999999999 Q ss_pred HhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHH-hhhhcceeeeEEEeecCCeeEEeeeeeecCceeEe Q lcl|Aclame:pro 85 ILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALD-GIGHGYSCIELEWALQGREWMPLAFHHRPQSWFQL 163 (526) Q Consensus 85 v~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~ld-a~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~ 163 (526) |.+++|.+.-.+. ..+...+..+..-=+..-...++++.++. .++.|.++..+ ...++ +.+....++.+... T Consensus 48 iA~~p~~~~~~~~--~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~--~~~~~-~~~~~~~~~~~~~~-- 120 (395) T protein:vir:95 48 VAQSHFKVLEGNR--IQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVV--SDSKE-LLIADSFYREEYAL-- 120 (395) T ss_pred hccceeEeccCCc--cccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEE--ecCCC-eEecCCccceeEee-- Confidence 9999998874332 22223333332211111124455555553 45566555433 22233 33322222222111 Q ss_pred cccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCC- Q lcl|Aclame:pro 164 NPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPG- 242 (526) Q Consensus 164 ~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~- 242 (526) ....-.... .........+++...|+.++....+..+|.|++..+.... .....+..+.|.|--+.+++.+ T Consensus 121 ~~~~~~~~~-~~~~~~~~~~~~~evih~~~~~~~~~~~G~spi~~~~~~~-------~~~~~~~~~~~~~~gii~~~~~~ 192 (395) T protein:vir:95 121 YDDIFKDVT-VKDYTYQRTFTMQEVIYLKYNNNKVTHFVESLFEDYGKIF-------GRMIGAQLKNYQIRGILKSASSA 192 (395) T ss_pred cCcceeEEE-EcCceeeeeeccccEEEEccCCCCcccccchHHHHHHHHH-------HHHHHHHHhcCCCceEEEeCCCC Confidence 111101111 1122223457888877777777788889999888775332 2333445566777667777655 Q ss_pred CCHHHHHHHHHHHHHhhc----Ce--EEEecCCceEEEeecCCCCh----HHHHHHHHHHHHHHHHHHhchhhhcccccc Q lcl|Aclame:pro 243 TADEEKATLLRAVTGLGH----AA--AGIIPETMAIDFQQAAQGSS----EPFLAMMRQSEDAISKAVLGGTLTSTTSQS 312 (526) Q Consensus 243 ~~~~e~~~l~~al~~~~~----~~--~~iip~~~~ie~~~a~~~~~----~~~~~li~~~d~~Isk~ilGqtltt~~~~~ 312 (526) .+++.++.+.+.+.++-+ +. +++++.|++++-++.+.... ..|.+..++..++|++++..+.--.+ T Consensus 193 ~~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~---- 268 (395) T protein:vir:95 193 YDEKNIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIY---- 268 (395) T ss_pred CCHHHHHHHHHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhc---- Confidence 467777777666665422 23 44467888887776432211 24666777888999999876543331 Q ss_pred cchhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 313 GGGAFA-LGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVG 391 (526) Q Consensus 313 ~~gS~a-~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G 391 (526) |+++ ..+........-+..-+..|+..||+.|+.+--. ..+-+|.+......|.+.+++++.++++.| T Consensus 269 --~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~kL~~~~~~---------~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G 337 (395) T protein:vir:95 269 --GETADLEKNTLVFEKFCLTPLLKKIQNELNAKLITQSMY---------LKDTRIEIVGVNKKDPLQYAEAIDKLVSSG 337 (395) T ss_pred --CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhh---------cccceecchhhhccCHHHHHHHHHHHHhCC Confidence 2222 3344445556678888899999999887653211 111245555566678999999999999999 Q ss_pred CcCCHHHHHHHhCCCCCCcc--chhcccCCCccccccccccccccccccc-cccccccc Q lcl|Aclame:pro 392 LEIPSAWVYDKLGIPQPAKN--EPVLRSAAQPAILSRQHGQRVAALATIV-GPRYGDQQ 447 (526) Q Consensus 392 ~~v~~~~~~e~~Glp~~~~~--e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 447 (526) + ++.+++|+.+|+|+-+++ +....+....+........+........ .......+ T Consensus 338 ~-lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~kgg~~~~~g~ 395 (395) T protein:vir:95 338 S-FTRNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDEKEKDENTLKGGDEDESGD 395 (395) T ss_pred C-cCHHHHHHHhCCCCCCCCCCceeeeccccccccccccccCcccccccCCCCCCCCCC Confidence 8 899999999999876554 3333222111111000011111110000 00111111 No 85 >protein:vir:101289 Length: 395 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908829;genbank:gi:118725093;genbank:GeneID:4555860 Probab=99.72 E-value=1.5e-16 Score=107.28 Aligned_cols=379 Identities=11% Similarity=-0.013 Sum_probs=197.1 Q ss_pred ecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHHHHHH Q lcl|Aclame:pro 5 VDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSKRKRA 84 (526) Q Consensus 5 ~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~a 84 (526) -+-+-+.++.+ -.+..+. +......++..-..+-+.|.+|+..+-.. T Consensus 1 Mg~f~~lf~~~------------------------~~~~~~~---------~~~~~~~v~~~~~~~~~~v~~~i~~Ia~~ 47 (395) T protein:vir:10 1 MSILEKIFKTR------------------------KDITYML---------DLDMIEDLSQQAYVKRLAIDSCIEFVARA 47 (395) T ss_pred CchhhhhhccC------------------------ccccccc---------cchhccccchhhhhhhHHHHHHHHHHHHh Confidence 11111111110 0000000 01111122222122578999999999999 Q ss_pred HhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHH-hhhhcceeeeEEEeecCCeeEEeeeeeecCceeEe Q lcl|Aclame:pro 85 ILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALD-GIGHGYSCIELEWALQGREWMPLAFHHRPQSWFQL 163 (526) Q Consensus 85 v~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~ld-a~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~ 163 (526) |.+++|.+.-.+. ..+...+..+..-=+..-...++++.++. .++.|.++..+ ...++ +.+....++.+... T Consensus 48 iA~~p~~~~~~~~--~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~--~~~~~-~~~~~~~~~~~~~~-- 120 (395) T protein:vir:10 48 VAQSHFKVLEGNR--IQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVV--SDSKE-LLIADSFYREEYAL-- 120 (395) T ss_pred hccceeEeccCCc--cccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEE--ecCCC-eEecCCccceeEee-- Confidence 9999998874332 22223333332211111124455555553 45566555433 22233 33322222222111 Q ss_pred cccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCC- Q lcl|Aclame:pro 164 NPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPG- 242 (526) Q Consensus 164 ~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~- 242 (526) ....-.... .........+++...|+.++....+..+|.|++..+.... .....+..+.|.|--+.+++.+ T Consensus 121 ~~~~~~~~~-~~~~~~~~~~~~~evih~~~~~~~~~~~G~spi~~~~~~~-------~~~~~~~~~~~~~~gii~~~~~~ 192 (395) T protein:vir:10 121 YDDIFKDVT-VKDYTYQRTFTMQEVIYLKYNNNKVTHFVESLFEDYGKIF-------GRMIGAQLKNYQIRGILKSASSA 192 (395) T ss_pred cCcceeEEE-EcCceeeeeeccccEEEEccCCCCcccccchHHHHHHHHH-------HHHHHHHHhcCCCceEEEeCCCC Confidence 111101111 1122223457888877777777788889999888775332 2333445566777667777655 Q ss_pred CCHHHHHHHHHHHHHhhc----Ce--EEEecCCceEEEeecCCCCh----HHHHHHHHHHHHHHHHHHhchhhhcccccc Q lcl|Aclame:pro 243 TADEEKATLLRAVTGLGH----AA--AGIIPETMAIDFQQAAQGSS----EPFLAMMRQSEDAISKAVLGGTLTSTTSQS 312 (526) Q Consensus 243 ~~~~e~~~l~~al~~~~~----~~--~~iip~~~~ie~~~a~~~~~----~~~~~li~~~d~~Isk~ilGqtltt~~~~~ 312 (526) .+++.++.+.+.+.++-+ +. +++++.|++++-++.+.... ..|.+..++..++|++++..+.--.+ T Consensus 193 ~~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~---- 268 (395) T protein:vir:10 193 YDEKNIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIY---- 268 (395) T ss_pred CCHHHHHHHHHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhc---- Confidence 467777777666665422 23 44467888887776432211 24666777888999999876543331 Q ss_pred cchhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 313 GGGAFA-LGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVG 391 (526) Q Consensus 313 ~~gS~a-~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G 391 (526) |+++ ..+........-+..-+..|+..||+.|+.+--. ..+-+|.+......|.+.+++++.++++.| T Consensus 269 --~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~kL~~~~~~---------~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G 337 (395) T protein:vir:10 269 --GETADLEKNTLVFEKFCLTPLLKKIQNELNAKLITQSMY---------LKDTRIEIVGVNKKDPLQYAEAIDKLVSSG 337 (395) T ss_pred --CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhh---------cccceecchhhhccCHHHHHHHHHHHHhCC Confidence 2222 3344445556678888899999999887653211 111245555566678999999999999999 Q ss_pred CcCCHHHHHHHhCCCCCCcc--chhcccCCCccccccccccccccccccc-cccccccc Q lcl|Aclame:pro 392 LEIPSAWVYDKLGIPQPAKN--EPVLRSAAQPAILSRQHGQRVAALATIV-GPRYGDQQ 447 (526) Q Consensus 392 ~~v~~~~~~e~~Glp~~~~~--e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 447 (526) + ++.+++|+.+|+|+-+++ +....+....+........+........ .......+ T Consensus 338 ~-lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~kgg~~~~~g~ 395 (395) T protein:vir:10 338 S-FTRNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDEKEKDENTLKGGDEDESGD 395 (395) T ss_pred C-cCHHHHHHHhCCCCCCCCCCceeeeccccccccccccccCcccccccCCCCCCCCCC Confidence 8 899999999999876554 3333222111111000011111110000 00111111 No 86 >protein:vir:100650 Length: 395 # NCBI annotation: 77ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958604;genbank:gi:41189523;genbank:GeneID:2743796 Probab=99.72 E-value=1.5e-16 Score=107.28 Aligned_cols=379 Identities=11% Similarity=-0.013 Sum_probs=197.1 Q ss_pred ecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHHHHHH Q lcl|Aclame:pro 5 VDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSKRKRA 84 (526) Q Consensus 5 ~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~a 84 (526) -+-+-+.++.+ -.+..+. +......++..-..+-+.|.+|+..+-.. T Consensus 1 Mg~f~~lf~~~------------------------~~~~~~~---------~~~~~~~v~~~~~~~~~~v~~~i~~Ia~~ 47 (395) T protein:vir:10 1 MSILEKIFKTR------------------------KDITYML---------DLDMIEDLSQQAYVKRLAIDSCIEFVARA 47 (395) T ss_pred CchhhhhhccC------------------------ccccccc---------cchhccccchhhhhhhHHHHHHHHHHHHh Confidence 11111111110 0000000 01111122222122578999999999999 Q ss_pred HhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHH-hhhhcceeeeEEEeecCCeeEEeeeeeecCceeEe Q lcl|Aclame:pro 85 ILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALD-GIGHGYSCIELEWALQGREWMPLAFHHRPQSWFQL 163 (526) Q Consensus 85 v~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~ld-a~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~ 163 (526) |.+++|.+.-.+. ..+...+..+..-=+..-...++++.++. .++.|.++..+ ...++ +.+....++.+... T Consensus 48 iA~~p~~~~~~~~--~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~--~~~~~-~~~~~~~~~~~~~~-- 120 (395) T protein:vir:10 48 VAQSHFKVLEGNR--IQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVV--SDSKE-LLIADSFYREEYAL-- 120 (395) T ss_pred hccceeEeccCCc--cccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEE--ecCCC-eEecCCccceeEee-- Confidence 9999998874332 22223333332211111124455555553 45566555433 22233 33322222222111 Q ss_pred cccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCC- Q lcl|Aclame:pro 164 NPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPG- 242 (526) Q Consensus 164 ~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~- 242 (526) ....-.... .........+++...|+.++....+..+|.|++..+.... .....+..+.|.|--+.+++.+ T Consensus 121 ~~~~~~~~~-~~~~~~~~~~~~~evih~~~~~~~~~~~G~spi~~~~~~~-------~~~~~~~~~~~~~~gii~~~~~~ 192 (395) T protein:vir:10 121 YDDIFKDVT-VKDYTYQRTFTMQEVIYLKYNNNKVTHFVESLFEDYGKIF-------GRMIGAQLKNYQIRGILKSASSA 192 (395) T ss_pred cCcceeEEE-EcCceeeeeeccccEEEEccCCCCcccccchHHHHHHHHH-------HHHHHHHHhcCCCceEEEeCCCC Confidence 111101111 1122223457888877777777788889999888775332 2333445566777667777655 Q ss_pred CCHHHHHHHHHHHHHhhc----Ce--EEEecCCceEEEeecCCCCh----HHHHHHHHHHHHHHHHHHhchhhhcccccc Q lcl|Aclame:pro 243 TADEEKATLLRAVTGLGH----AA--AGIIPETMAIDFQQAAQGSS----EPFLAMMRQSEDAISKAVLGGTLTSTTSQS 312 (526) Q Consensus 243 ~~~~e~~~l~~al~~~~~----~~--~~iip~~~~ie~~~a~~~~~----~~~~~li~~~d~~Isk~ilGqtltt~~~~~ 312 (526) .+++.++.+.+.+.++-+ +. +++++.|++++-++.+.... ..|.+..++..++|++++..+.--.+ T Consensus 193 ~~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~---- 268 (395) T protein:vir:10 193 YDEKNIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIY---- 268 (395) T ss_pred CCHHHHHHHHHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhc---- Confidence 467777777666665422 23 44467888887776432211 24666777888999999876543331 Q ss_pred cchhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 313 GGGAFA-LGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVG 391 (526) Q Consensus 313 ~~gS~a-~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G 391 (526) |+++ ..+........-+..-+..|+..||+.|+.+--. ..+-+|.+......|.+.+++++.++++.| T Consensus 269 --~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~kL~~~~~~---------~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G 337 (395) T protein:vir:10 269 --GETADLEKNTLVFEKFCLTPLLKKIQNELNAKLITQSMY---------LKDTRIEIVGVNKKDPLQYAEAIDKLVSSG 337 (395) T ss_pred --CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhh---------cccceecchhhhccCHHHHHHHHHHHHhCC Confidence 2222 3344445556678888899999999887653211 111245555566678999999999999999 Q ss_pred CcCCHHHHHHHhCCCCCCcc--chhcccCCCccccccccccccccccccc-cccccccc Q lcl|Aclame:pro 392 LEIPSAWVYDKLGIPQPAKN--EPVLRSAAQPAILSRQHGQRVAALATIV-GPRYGDQQ 447 (526) Q Consensus 392 ~~v~~~~~~e~~Glp~~~~~--e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 447 (526) + ++.+++|+.+|+|+-+++ +....+....+........+........ .......+ T Consensus 338 ~-lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~kgg~~~~~g~ 395 (395) T protein:vir:10 338 S-FTRNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDEKEKDENTLKGGDEDESGD 395 (395) T ss_pred C-cCHHHHHHHhCCCCCCCCCCceeeeccccccccccccccCcccccccCCCCCCCCCC Confidence 8 899999999999876554 3333222111111000011111110000 00111111 No 87 >protein:vir:96579 Length: 576 # NCBI annotation: ORF012 # Family: family:all:2446 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238542;genbank:gi:66391267;genbank:GeneID:5130361 Probab=99.70 E-value=2.4e-15 Score=100.73 Aligned_cols=447 Identities=10% Similarity=0.019 Sum_probs=226.2 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhh-hhhccc-C-HHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQ-HPAKGL-T-PAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAE 77 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l-~-~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~ 77 (526) |..+.+ +-.+++.+.-.++ .+........ ...++. + |.. ... ..++..+...| . .-+.|.+| T Consensus 35 ~~~~~~-~~~~~~~~~~~~~----~a~~~p~~~~~~~~~~~~~~p~~-~~~-----~~~~~~~l~~~---~-~npiv~~~ 99 (576) T protein:vir:96 35 IRNIEE-KSKELNKSLYGKQ----QAYAEPFLEVMDTNPEFRTKRSY-MKN-----SDNLHDVLKQF---G-NNPILNAI 99 (576) T ss_pred HHHhhh-hhhhhccccCCcc----chhhcceeeeeecCCCccccCcc-hhh-----hhhhHHHHHHh---h-cCHHHHHH Confidence 221111 1111111000000 0000000000 000010 0 100 000 01122222222 1 35788999 Q ss_pred HHHHHHHHhc-----------CCceEecCCCC-CHHHHH------HHHHHHHHHhc-C---cCHHHHHHHHH-Hhhhhcc Q lcl|Aclame:pro 78 MSKRKRAILG-----------LDWAVEPPRNA-SAAEKA------DADYLHELLLD-L---EGLEDLLLDAL-DGIGHGY 134 (526) Q Consensus 78 l~~Rk~av~~-----------~~w~v~~~~~~-~~~~~~------~a~~v~~~l~~-~---~~~~~~i~~~l-da~~~G~ 134 (526) +..|...|.. ..|.|.....+ ...... +..++..++.. . ..|.++++.++ +.+.+|. T Consensus 100 I~~ia~~vA~~~~~~~~~~~~~~~~i~lk~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~dlll~Gn 179 (576) T protein:vir:96 100 ILTRSNQVAMYCQPSRYNERGLGFEVRMRDLDAEPGKKEKEEIKRIENFILNTGRDKDIDRDSFQSFCRKIVRDTYTYDQ 179 (576) T ss_pred HHHHHHHHHhhhhhhhhccccccceeEEecCcCccchhhhHhhhhHHhhHhhccCCCCCccccHHHHHHHHHHHHHhcCC Confidence 9999988774 56777654322 111111 22333333322 1 13667777766 5788999 Q ss_pred eeeeEEEeecCCeeEEeeeeeecCceeEecccCCceEEec-------cCCCCceeecCCCeEEEeecCCCC---ccccch Q lcl|Aclame:pro 135 SCIELEWALQGREWMPLAFHHRPQSWFQLNPEDQNELRLR-------DNSPAGEALQPFGWIIHRPRARSG---YVARSG 204 (526) Q Consensus 135 s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~~~~~~~~l~~~-------~~~~~g~~lp~~k~i~~~~~~~~g---~p~g~g 204 (526) +.+|++|.++++ -.+..|.+.++.++++..+....+... .+......+++...|+|++....+ ..||.+ T Consensus 180 a~~~i~~~rd~~-g~~~~L~pl~p~~V~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~d~~~~~~G~S 258 (576) T protein:vir:96 180 VNFEKVFNKKNA-TTMDKFIAVDPSTIFYATDKNGKIIKGGKRFVQVINKKVVASFTSREMAMGIRNPRTELSSSGYGLS 258 (576) T ss_pred eEEEEEEecCCC-CceEEEEEeCCceeEEEECCCCceeeeeeEEEEecCCceEEEecccceEEEeecCCCCcccCccccc Confidence 999999987643 235689999998888766554433221 122223457788888888766554 678999 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCC--CCCHHHHHHHHHHHHHhhc---Ce---EEEecCCceEEEee Q lcl|Aclame:pro 205 LFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPP--GTADEEKATLLRAVTGLGH---AA---AGIIPETMAIDFQQ 276 (526) Q Consensus 205 Ll~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~--~~~~~e~~~l~~al~~~~~---~~---~~iip~~~~ie~~~ 276 (526) .+..+....-.-....++...|....+.|--|.+++. ..++++++++.+.+.+.-+ ++ .+|++.|++++-++ T Consensus 259 pi~~a~~~i~~~~~~~~~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lr~~~~~~~~G~~nag~~p~vl~~G~~~~~ls 338 (576) T protein:vir:96 259 EVEIAMKQFIAYNNTETFNDRFFSHGGTTRGILQIKSEQQQSQRALENFKREWKSSFSGINGSWQVPVVMADDIKFVNMT 338 (576) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceeecCCCceEEecc Confidence 9999999999999999999999999999988877764 3478888888888877522 22 36779998776665 Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccc-------cch--hhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 277 AAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQS-------GGG--AFALGQVH-NEVRHDLLASDARQLAATLSRDL 346 (526) Q Consensus 277 a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~-------~~g--S~a~~~vh-~~v~~~~~~ad~~~i~~~ln~~l 346 (526) .+ ..-..|.+..++..++|++++..+..-.+..++ ++| +|+..+-. ......-+...++.|+..||+.| T Consensus 339 ~~-~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~g~~~~~s~t~sn~e~~~~~f~~~tL~P~~~~ie~~ln~~L 417 (576) T protein:vir:96 339 PT-ANDMQFEKWLTYLINIISALYGIDPAEIGFPNRGGATGGKGGNTLNEADPGKKQQQSQNKGLQPLLRFIEDLINTHI 417 (576) T ss_pred CC-hhhHHHHHHHHHhHHHHHHHhCCCHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhh Confidence 32 233468888999999999998655432221111 112 33333322 33455678888999999999988 Q ss_pred HHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHH--HhCCCcCCHHHHHHHhCCCCCCccchhcccCCCcccc Q lcl|Aclame:pro 347 LWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPAL--VNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAIL 424 (526) Q Consensus 347 i~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l--~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~ 424 (526) ++.+ +. .-.|.|.. .|.+.+++....+ ...|+ ++.+++|+.+|+|+-+.++..+.+...+... T Consensus 418 l~~~-----~~------~~~~~f~r---~d~~~~~e~~~~~~~~~~G~-lT~NE~R~~~gl~piegGD~~~~~~~~~~~~ 482 (576) T protein:vir:96 418 ISEY-----SD------KYVFQFVG---GDTKSELDKIKILQEEVKTY-KTVNEARKEKGLKPIEGGDVLLDGSFIQSMS 482 (576) T ss_pred chhc-----cC------ceEEEecc---CCHHHHHHHHHHHHHHhcCc-cCHHHHHHHhCCCCCCCcceecccccccccc Confidence 7532 11 11355543 4566666655433 44576 8999999999999876666443211100000 Q ss_pred ---------------------------cccccccccccccccccccccccchHH------HHHHHHHHHHHH---HHHHH Q lcl|Aclame:pro 425 ---------------------------SRQHGQRVAALATIVGPRYGDQQALDK------ALADLPAKDMQN---QANDL 468 (526) Q Consensus 425 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~---~~~~~ 468 (526) ....+..................-.+. .+.......... ....+ T Consensus 483 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (576) T protein:vir:96 483 LNTQKEQYEDTKQKERFDMIQQFLNSPDDEEPQQESTEDKVDGRESNDPTKIDSPVGTDGQLKDQDNVKSQEGSNKGQGT 562 (576) T ss_pred ccccCCCCCCccccccccccccccCCCCCCCCCCCCCCCcccccccccCCCCCCccccccccCCCCcccccccccccccc Confidence 000000000000000000000000000 000000000000 00000 Q ss_pred HH---HHHHHHHhc Q lcl|Aclame:pro 469 LA---PLLEAVNRG 479 (526) Q Consensus 469 ~~---~i~~~~~~a 479 (526) .. .--.-++.. T Consensus 563 ~~~~~~~~~~~~~~ 576 (576) T protein:vir:96 563 KGKGNEKPSDFKNN 576 (576) T ss_pred cccCCCCcccccCC Confidence 00 000000000 No 88 >protein:vir:100691 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:2446 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164747;genbank:gi:56693160;genbank:GeneID:3197324 Probab=99.70 E-value=6.2e-15 Score=98.46 Aligned_cols=438 Identities=9% Similarity=-0.016 Sum_probs=219.0 Q ss_pred CCeeecCCCCccCccccchhh-----hhhhhhhhhhhhhhhhccc------------CHHHHHHHHHcccCCCHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQ-----TSRLAGLAKEFAQHPAKGL------------TPAKLARILVEAEQGNLQAQAEL 63 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l------------~~~~~~~~l~~a~~g~~~~~~~l 63 (526) |+. -+.-+-++.+.-.+.. -+..+..++.+.+-....- +...+..+++.+....+.. .. T Consensus 13 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~ 88 (535) T protein:vir:10 13 LSN--KKSTSYIELGDYDKDIVNKAIRPGRASARDTVDGIDIADGNVAGQYSVASISDVLSTKKLLKAYADNDIVQ--AI 88 (535) T ss_pred hhh--hhhhhhHHHhhhhHHHHHhhhhhhhhhhhccccccccccCCcccccccCccccccCHHHHHHHhccChhHH--HH Confidence 221 1111111111111110 0000000000000000000 0112334444333322111 11 Q ss_pred HHHHHhccHHHHHHHHHHHHHHhcCCceEecCCCC-CHHHHHHHHHHHHHHhcCc--------CHHHHHHHHH-Hhhhhc Q lcl|Aclame:pro 64 FMDMEERDAHLFAEMSKRKRAILGLDWAVEPPRNA-SAAEKADADYLHELLLDLE--------GLEDLLLDAL-DGIGHG 133 (526) Q Consensus 64 ~~~m~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~-~~~~~~~a~~v~~~l~~~~--------~~~~~i~~~l-da~~~G 133 (526) .+-+ .++..+.+|+......+.++++.+.-.... +...++....+...|...| .|..++..++ +.+.+| T Consensus 89 i~t~-~~~va~~~~i~~~s~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~~~~~~~~~~~~~lv~d~l~~~ 167 (535) T protein:vir:10 89 IRTR-TNQVLTYSNPSRYNRNGVGFKVELKDATKVMSKAQIKRAHEIEDFIYNTGSEYYEWRDTFPRLLTKIINDMYVQD 167 (535) T ss_pred HHHH-HHHHHHHHHHHHHhcccCcceeEEEeccCCCcchhhhhhhHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHhhC Confidence 1222 245566677776666666777666533211 1222222233445554332 2446777666 445555 Q ss_pred -ceeeeEEEeecCCeeEEeeeeeecCceeEecccCCc-----eEEeccCCCCceeecCCCeEEEeecCC---CCccccch Q lcl|Aclame:pro 134 -YSCIELEWALQGREWMPLAFHHRPQSWFQLNPEDQN-----ELRLRDNSPAGEALQPFGWIIHRPRAR---SGYVARSG 204 (526) Q Consensus 134 -~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~~~~~~~-----~l~~~~~~~~g~~lp~~k~i~~~~~~~---~g~p~g~g 204 (526) .++.++++... | .|..|.+.++.++++..+... .+....+...+..+++...|++++... .+.+||.| T Consensus 168 g~ay~~i~r~~~-G--~~~~L~~l~p~~V~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~eiih~~~~~~~~~~~~~~G~S 244 (535) T protein:vir:10 168 QINIERIFKNDS-N--ELDHFNAVDASKVVISYSPRSKDQPRKFEQFVSETKSVKFSERNLTFINYWNLSDTDRRGYGYS 244 (535) T ss_pred CceEEEEEECCC-C--cEEEEEEeCCceeEEEEcCccccCceEEEEEecCceeEEECcccEEEEeccCCCCccccccccc Confidence 56777765433 3 366899999988877543221 222223344456688888877776443 33568999 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCC----CCCHHHHHHHHHHHHHhhc---CeE-EEecCCceEEEee Q lcl|Aclame:pro 205 LFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPP----GTADEEKATLLRAVTGLGH---AAA-GIIPETMAIDFQQ 276 (526) Q Consensus 205 Ll~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~----~~~~~e~~~l~~al~~~~~---~~~-~iip~~~~ie~~~ 276 (526) .+..+....-.-....++...|...-+.|--|.+++. ..++++++++.+.+.+..+ +++ ..+..+..++|.. T Consensus 245 pi~~~~~~i~~~~aa~~~~~~~f~ng~~p~giL~~~~~~~~~ls~e~~e~lk~~~~~~~~G~~nag~~~vl~~~g~~~~~ 324 (535) T protein:vir:10 245 PVEASIPLIRAIYDTEQFNARFFSQGGTTRGILVIDQDGDAQANQMMLAGIRRQWTSQGSGLGGAWKIPILAAKDAKFVN 324 (535) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEecCCCCcccCHHHHHHHHHHHHHHhcCcccccccccccCCCceEEe Confidence 9999999999999999999999999999988888864 3567888888888776532 222 2233333344544 Q ss_pred cCCC-ChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhh------------hhHHHHHH-HHHHHHHHHHHHHHHH Q lcl|Aclame:pro 277 AAQG-SSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFA------------LGQVHNEV-RHDLLASDARQLAATL 342 (526) Q Consensus 277 a~~~-~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a------------~~~vh~~v-~~~~~~ad~~~i~~~l 342 (526) .+.. .-..|.+..++..++|++++..+..-.+..+ .++|+ ..+..... ....+...++.|+..| T Consensus 325 l~~~~~D~qfle~~~~~~~eIa~afgVPp~~lG~~~--~at~sn~~~~~~~~~~s~~E~~~~~~~~~~L~P~l~~ie~~l 402 (535) T protein:vir:10 325 MTQNSRDMEFDKFLNFMIYDTAAIFQMQPEEINFPN--NGGSTGKSGTKSVNEGSTAKAKLESSKDKGLTPLLSFIEQVI 402 (535) T ss_pred cCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccc--CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH Confidence 4322 2235778888999999999866543322211 12222 11222222 2345777888999999 Q ss_pred HHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcc------ Q lcl|Aclame:pro 343 SRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLR------ 416 (526) Q Consensus 343 n~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~------ 416 (526) |+.|++.. + ..-+|.|+.....|.+..++..+... .|. ++.+++|+.+|+|+.+.++.... T Consensus 403 n~~Ll~~~-----~------~~~~f~f~~l~~~d~~~r~~~~~~~~-~g~-lT~NE~R~~~gl~piegGD~~~~~~~~~~ 469 (535) T protein:vir:10 403 NDKIMRYV-----D------TDYRFSFTLGDAQDKLQEEQVWKLKL-ANG-YFINEYRKDHGLKTVDGLDVPGFIGSAEN 469 (535) T ss_pred hhhccccc-----C------CeEEEEeccccccCHHHHHHHHHHHH-cCC-CCHHHHHHHhCCCCCCCccccccccchhh Confidence 98877422 1 11367888888888888888776554 566 79999999999998766653211 Q ss_pred ---c--CCCcccccc--ccccccccc-------------ccccccccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 417 ---S--AAQPAILSR--QHGQRVAAL-------------ATIVGPRYG-DQQALDKALADLPAKDMQNQANDLLAPLLEA 475 (526) Q Consensus 417 ---~--~~~~~~~~~--~~~~~~~~~-------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 475 (526) . ...+..+.. ..+...... .+...+..+ ......+.... T Consensus 470 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~q~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------------------- 529 (535) T protein:vir:10 470 FINATGFGQPNVPDSSDDSGSTLGERERQERIQHSKDYEKGKDDPKSPLPKPSESDDVSN-------------------- 529 (535) T ss_pred cccccccccccCCCCCCCccccCCccccCcccccccccccCCCCCCCCCCcCCCCCcccc-------------------- Confidence 0 000000000 000000000 000000000 00000000000 Q ss_pred HHhcCC Q lcl|Aclame:pro 476 VNRGDS 481 (526) Q Consensus 476 ~~~a~s 481 (526) -+++.+ T Consensus 530 ~~~~~~ 535 (535) T protein:vir:10 530 NEDADT 535 (535) T ss_pred ccccCC Confidence 000000 No 89 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=99.70 E-value=5.7e-17 Score=109.64 Aligned_cols=375 Identities=10% Similarity=0.004 Sum_probs=217.1 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+ |.+.... ........ ...+.... ...+ + ... ..|..... . ..+ +-+.|.+|+.. T Consensus 1 Mg-lf~~~~~--~~~~~~~~-~~~~~~~~-------~~~~----~-~~~---~~~~~v~~-~---~al-~~~~V~~~i~~ 56 (384) T protein:vir:49 1 MP-IFNITNL--ATESPPSN-QDSFFDIT-------DPEF----L-DAL---NGSEWVSA-E---TAL-KNSDLFSIISQ 56 (384) T ss_pred Cc-ccccccc--Cccccccc-chhhcccc-------chhh----c-ccc---cCCceech-h---hhh-ccHHHHHHHHH Confidence 88 5654211 11110000 00110000 0000 0 000 01110000 0 111 47789999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCc Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQS 159 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~ 159 (526) +...|.++++.+.-... ....+.. +......++++.++ +.+.+|.++++++++..+ .+..|.+.++. T Consensus 57 Ia~~ia~l~~~~~~~~~--------~~l~~~P-N~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~g---~~~~L~~l~~~ 124 (384) T protein:vir:49 57 LSNDLATAKITTSRKQL--------QGIVDNP-SNNANRFNFYQSIFAQMLLGGEAFAYRWRNENG---RDMKWEYLRPS 124 (384) T ss_pred HHHHHhhCceeeecchh--------hhhhhcc-CCCCCHHHHHHHHHHHhhhcCCeEEEEEECCCC---cEEEEEEEcCc Confidence 99999999999863211 1111111 11113566777666 578899999999986544 36789999998 Q ss_pred eeEecccC-CceEEec--cCC---CCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCc Q lcl|Aclame:pro 160 WFQLNPED-QNELRLR--DNS---PAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLP 233 (526) Q Consensus 160 ~f~~~~~~-~~~l~~~--~~~---~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P 233 (526) ++++.... ...+.++ .++ .....+++...|+.++....+..+|.|.+..+....-.-....++...+...-+.| T Consensus 125 ~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~eVih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~ 204 (384) T protein:vir:49 125 QVSFNRLDNQNGLYYNITFDDPRIPPKQHVPQGDILHFRLLSVDGGLTSVSPLMALGRELNIQKASDKLTLNALKNALNA 204 (384) T ss_pred eeEEEEcCCCceEEEEEEecCccccceeEecCccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCC Confidence 88765432 3333322 111 22245778777766666666678999999999998888888889999999999999 Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHhhcC--eEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhccccc Q lcl|Aclame:pro 234 IRLGKYPPGTADEEKATLLRAVTGLGHA--AAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQ 311 (526) Q Consensus 234 ~~vgk~~~~~~~~e~~~l~~al~~~~~~--~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~ 311 (526) --+.+++...+++++.+...+-.....+ ..++++.|++++-++.+ .....|.+..++..++|++++..+.--.+... T Consensus 205 ~~il~~~~~~~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~-~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~ 283 (384) T protein:vir:49 205 NGILKIKGGGLLDFKTKQSRSRQAMKQMQGGPLVLDDLEDFTPLEIK-SNVAQLLSQADWTTGQFAKVYGIPESVVGGEG 283 (384) T ss_pred ceEEEeCCCCChHHHHHHHHHHHhcccCCccceecCCCceEEEccCC-hhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCC Confidence 9999999888776666555444433333 46778888876665433 23345778888999999999866543332111 Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 312 SGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVG 391 (526) Q Consensus 312 ~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G 391 (526) + +.+..+...+.....++.-++.+...|++.+-+.+..-..........+.+|.++.--..|+....++..++...| T Consensus 284 ~---~~~~~~~~~~~~~~~i~~~l~pi~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~e~~~~l~~~g 360 (384) T protein:vir:49 284 D---KQSSLEMIYNIYFKAVSRFLRPFVSELSKKLSCEVDADILPAVDPTGSNYIGLINSMVKTGTLAQNQGLYVLQQAE 360 (384) T ss_pred C---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhhhhccchHHHHHHHHHhhcCcccHHHHHHHHhhCC Confidence 1 1122223344445566666666666666665554421000000000112223233333456777888888898888 Q ss_pred CcCCHHHHHHHhCCCCCCccchhccc Q lcl|Aclame:pro 392 LEIPSAWVYDKLGIPQPAKNEPVLRS 417 (526) Q Consensus 392 ~~v~~~~~~e~~Glp~~~~~e~~~~~ 417 (526) +. + +++|+..|+|+.+.+++--.= T Consensus 361 ~~-~-ne~r~~~~~~p~~gGd~~~~~ 384 (384) T protein:vir:49 361 IL-P-KDLPEGETDSTLKGGETNEQY 384 (384) T ss_pred CC-C-hhHHHHcCCCCCCCCCCCCCC Confidence 74 4 779999999776544422111 No 90 >protein:vir:4828 Length: 382 # NCBI annotation: ORF24 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID:1262630 Probab=99.69 E-value=3e-16 Score=105.70 Aligned_cols=372 Identities=10% Similarity=0.043 Sum_probs=218.5 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhh-hhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGL-AKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMS 79 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~ 79 (526) |+ |++.. ++.+...+ ...... ...+.. .. . .|. .+......+-+.|.+|+. T Consensus 1 Mg-~f~~~---~~~~~~~~---~~~~~~~~~~~~~----~~---------~---~~~-----~v~~~~~l~~~~v~~~i~ 52 (382) T protein:vir:48 1 MP-IFNLA---TESPPDNQ---GGFFDVVDSDFLA----SL---------K---GNE-----WVSAETALRNSDLFSIIN 52 (382) T ss_pred Cc-ccccc---ccCCcccc---cccccchhhhccc----cc---------c---CCc-----ccchHhhhccHHHHHHHH Confidence 88 44432 11111100 000000 000000 00 0 010 011111125788999999 Q ss_pred HHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecC Q lcl|Aclame:pro 80 KRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQ 158 (526) Q Consensus 80 ~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~ 158 (526) .+...|.+++|.+.-... ..+..+. +......++++.+. +.+.+|.++++++.+..| .+..|.+.++ T Consensus 53 ~ia~~ia~~~~~~~~~~~--------~~L~~~P-N~~~t~~~f~~~l~~~l~l~Gna~~~i~rd~~G---~~~~l~~i~~ 120 (382) T protein:vir:48 53 QLSNDLATVKLITSRKKL--------QGIVDNP-SNNANRFNFYQSIFAQMLLGGEAFAYRWRNENG---RDMKWEYLRP 120 (382) T ss_pred HHHHhhccCceeeecchh--------hhhhhhc-CCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCC---cEEEEEEEcC Confidence 999999999999873211 1111221 22123567777777 678899999999765433 3568999999 Q ss_pred ceeEecccC-CceEEec--cCC---CCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCC Q lcl|Aclame:pro 159 SWFQLNPED-QNELRLR--DNS---PAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGL 232 (526) Q Consensus 159 ~~f~~~~~~-~~~l~~~--~~~---~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~ 232 (526) .++++..+. +..+.++ .++ .....+++...+++++....+.++|.|.+..+....-.-....++...+...-+. T Consensus 121 ~~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~ 200 (382) T protein:vir:48 121 SQVSFNRLDNKDGIYYNITFDDPRIPPKQHVPQNDVLHFRLLSVDGGMTSVSPLMALSRELDIQKASGNLTINSLKNALN 200 (382) T ss_pred ceeEEEEcCCCCeEEEEEEecCccccceeEEcCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCC Confidence 988765432 2333332 111 1224578888777776666778999999999999888888888999999999999 Q ss_pred ceEEEecCCCCCHHHHHHHHHHHHHhhcC--eEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccc Q lcl|Aclame:pro 233 PIRLGKYPPGTADEEKATLLRAVTGLGHA--AAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTS 310 (526) Q Consensus 233 P~~vgk~~~~~~~~e~~~l~~al~~~~~~--~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~ 310 (526) |--+.+++...+++++.++.++..+...+ ..+|++.|++++-++.+ .....|.+..++..++|++++..+..-.+.. T Consensus 201 p~~il~~~~~~~~e~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~-~~d~q~~e~~~~~~~~Ia~afgVp~~~lg~~ 279 (382) T protein:vir:48 201 ANGILKIKGGGLLDFKTKLSRSRQAMKQMQGGPLVLDDLEDFTPLEIK-SNVSQLLKQADWTTGQFAKVYGIPDNVVGGQ 279 (382) T ss_pred CceEEEeCCCCChHHHHHHHHHHHhhccCCCCeeEcCCCceEEEccCC-hhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC Confidence 99999999888888888888887776644 56778888877666533 2233577888899999999987665444321 Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhC Q lcl|Aclame:pro 311 QSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNV 390 (526) Q Consensus 311 ~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~ 390 (526) +.++ ...+.........+..-++.|+..+|+.|.+++- .+ ..+.+. .|-..+...+.+|+.. T Consensus 280 --~~~~-~~~~~~~~~~~~~l~p~~~~i~~~l~~~l~~~~~-~~--------~~~~~~------~~~~~~~~~~~~l~~~ 341 (382) T protein:vir:48 280 --GDQQ-SSLEMSSDLYSKAVSRYLRPFLSELSQKLSCDVD-AD--------IFPAVD------PTGSNYISRINSLVKT 341 (382) T ss_pred --CCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh-hh--------hhhhhc------cchhHHHHHHHHHhhc Confidence 1122 2233334455667777888999999887755431 11 011111 2233455667788888 Q ss_pred CCcCCHHHHHHHhCCCCCCccchhcccCCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 391 GLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQ 447 (526) Q Consensus 391 G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (526) |+ .+.+++|+.++-..-.. +++...... .++ ..+.....++ T Consensus 342 g~-~t~~e~r~~l~~~g~~~-~~~~~~~~~--~~~------------~~GGd~~~~~ 382 (382) T protein:vir:48 342 GT-LAQNQGLYILQQAEILP-KELPNGENP--NST------------LKGGEEDGQD 382 (382) T ss_pred Cc-cCHHHHHHHHhhCCCCC-cchhhhhcC--CCC------------CCCCCCCCCC Confidence 87 88999999874211010 111100000 000 0000001111 No 91 >protein:vir:95965 Length: 385 # NCBI annotation: ORF011 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239800;genbank:gi:66395461;genbank:GeneID:5132882 Probab=99.66 E-value=2.5e-15 Score=100.61 Aligned_cols=364 Identities=10% Similarity=0.006 Sum_probs=195.2 Q ss_pred ecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHHHHHH Q lcl|Aclame:pro 5 VDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSKRKRA 84 (526) Q Consensus 5 ~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~a 84 (526) -+-..+.++.+ ..+...+. ......++.....+.+.|.+|++.+... T Consensus 1 Mg~f~~~f~~~------------------~~~~~~~~---------------~~~~~~~~~~~a~~~~~v~~~i~~ia~~ 47 (385) T protein:vir:95 1 MGLFDSVFKRH------------------SELSWMYD---------------LEFLQDKSKKAYLKQIALNTVVEMVART 47 (385) T ss_pred CchhhhhhccC------------------cccccccc---------------hhhhhccchhhhhhhHHHHHHHHHHHHH Confidence 11111111100 00000111 1111112222223678999999999999 Q ss_pred HhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCc Q lcl|Aclame:pro 85 ILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQS 159 (526) Q Consensus 85 v~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~ 159 (526) |.+++|.+...+. ... .-+..+|+..| ...++++.+. +.+.+|.+++.+. ++++ +.+.....++. T Consensus 48 ia~~p~~~~~~~~--~~~----~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~i~~~--~~~~-~~~~~~~~~~~- 117 (385) T protein:vir:95 48 ISQSEFRVMKNNT--KEK----GTLYYLLNVRPNRNQNAVDFWQKFIFKLIMDNEVLVVKN--DEGH-FFVADDFEKED- 117 (385) T ss_pred HcccceeeeecCc--ccc----chHHHHHhcccCcCCCHHHHHHHHHHHHhhcCceEEEEe--cCCC-eeecccccccc- Confidence 9999999975332 222 22333443322 2456666655 5778999986542 3333 33322222222 Q ss_pred eeEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEec Q lcl|Aclame:pro 160 WFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKY 239 (526) Q Consensus 160 ~f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~ 239 (526) .....+..-.... ..+......+++...++.++....+..+|.|++..+.-..-. .+.. ...-|.|--+.+. T Consensus 118 ~~~~~~~~~~~~~-~~~~~~~~~~~~~eiih~~~~~~~~~~~G~s~~~~~~~~i~~------~~~~-~~~~~~~~g~l~~ 189 (385) T protein:vir:95 118 ELGLYSHRFTNVL-VNDFEFKRVFTMDDVIYLKYNNQKLDAFSLGLFEDYGEIFGR------MIDL-QMLNNQIRGILKV 189 (385) T ss_pred ccccccccceeee-ecccceeeeeccccEEEecCCCCCcccccchHHHHHHHHHHH------HHHH-HHhcCCCceEEEe Confidence 1111111101111 111122234777777766666666778899998887654321 1222 2223445455555 Q ss_pred C--CCCCHHHHHHHHHHHHHhh----c--CeEEEecCCceEEEeecCC---CCh--HHHHHHHHHHHHHHHHHHhchhhh Q lcl|Aclame:pro 240 P--PGTADEEKATLLRAVTGLG----H--AAAGIIPETMAIDFQQAAQ---GSS--EPFLAMMRQSEDAISKAVLGGTLT 306 (526) Q Consensus 240 ~--~~~~~~e~~~l~~al~~~~----~--~~~~iip~~~~ie~~~a~~---~~~--~~~~~li~~~d~~Isk~ilGqtlt 306 (526) + ...+++.++.+.+.+.++- + ...++++.|++++-++... .+. ..|.+..++..++|++++..+.-. T Consensus 190 ~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~i~~l~~g~~~~~l~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgVpp~~ 269 (385) T protein:vir:95 190 DATKFYNKEKQKELQAYIDTLFDAFQNNTIAVVPLTEGLAYEEHSNRGAAQSAQQFSELNELKKTVLTDVARMIGVPPSL 269 (385) T ss_pred CCccCCCHHHHHHHHHHHHHHhhhhhhcCCceEEcCCCceeEeecccccccCCHHHHHHHHHHHHHHHHHHHHhCCCHHH Confidence 4 3456666666666665541 2 2356788998887765321 222 358888999999999998776432 Q ss_pred cccccccchhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHH Q lcl|Aclame:pro 307 STTSQSGGGAFALGQ-VHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIP 385 (526) Q Consensus 307 t~~~~~~~gS~a~~~-vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~ 385 (526) .. |+++..+ ........-+.-.++.|+..||+.|+++--..++ +.+|.++.....|.+.+++++. T Consensus 270 l~------~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~~L~~~~~~~~~--------~~~fd~~~l~~~D~~~~~~~~~ 335 (385) T protein:vir:95 270 VL------GEMADLEKTIESYLQFCINPLLRKIEAELNSKFFYQDEYLND--------DMHIKVVGIDKRDPLKLSEAID 335 (385) T ss_pred hc------CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhcccc--------eEEEechhhhccCHHHHHHHHH Confidence 21 2333223 3344456678888999999999888765322211 2344444555678999999999 Q ss_pred HHHhCCCcCCHHHHHHHhCCCCCC--ccchhcccCCCcccccccccccccccccccccccccccchHH Q lcl|Aclame:pro 386 ALVNVGLEIPSAWVYDKLGIPQPA--KNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDK 451 (526) Q Consensus 386 ~l~~~G~~v~~~~~~e~~Glp~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (526) ++++.|+ ++.+++|+.+|+|+.. .++....+... .+.... .+ .+.. ++ T Consensus 336 ~~~~~g~-lt~NE~R~~~g~~p~~~~~gd~~~~~~n~-~~~~~~--------kg--ge~~------~e 385 (385) T protein:vir:95 336 KLVASGT-FTRNQVRIMTGEEPADDPELDKFIITKNL-QSADAF--------KG--GESN------EE 385 (385) T ss_pred HHHhCCC-cCHHHHHHHhCCCCCCCCCCceeeecccc-eecccc--------cC--CCCC------CC Confidence 9999997 9999999999998642 33433322111 111000 00 0000 00 No 92 >protein:vir:1082 Length: 359 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076736;genbank:gi:13095846;genbank:GeneID:920394 Probab=99.64 E-value=3.9e-15 Score=99.59 Aligned_cols=345 Identities=11% Similarity=0.035 Sum_probs=204.5 Q ss_pred CCeeecCCCCccCccccchhhh--hhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQT--SRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEM 78 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l 78 (526) |+ ++++ |+.+....+.. ..+.+.. .......+++.+ ..+-+.|.+|+ T Consensus 1 M~-~~~~----f~~r~~~~~~~~~~~~~~~~---~~~~~~~v~~~~-----------------------al~~~av~~cv 49 (359) T protein:vir:10 1 MS-ILNP----FERRSSITPNNYYPFMVQNG---SIVPNSLVDATE-----------------------ALKNSDLYAVT 49 (359) T ss_pred Cc-ccch----hhccccCCCCcchhhhhccc---cccCCcccCHHH-----------------------hhcchHHHHHH Confidence 88 5553 43322111110 0000000 000000111111 11467889999 Q ss_pred HHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeec Q lcl|Aclame:pro 79 SKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRP 157 (526) Q Consensus 79 ~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~ 157 (526) ..+...|.++++.- +.....++.+.=..+. ..++++.+. +.+++|.++++++++..+ .+..+.+.+ T Consensus 50 ~~ia~~ia~~p~~~---------~~~~~~L~~~PN~~~t-~~~f~~~~~~~lll~Gnay~~i~r~~~g---~~~~l~~l~ 116 (359) T protein:vir:10 50 SLISSDIAGTRFIG---------NQVFTSVLNNPSHLTN-AFSFWQTAILNLLLNGNVFLAILKGDNS---LMKELRLIP 116 (359) T ss_pred HHHHHhhhcCcccc---------chHHHHHhhcccccCC-HHHHHHHHHHhccccCceEEEEEECCCC---eEEEEEEeC Confidence 99999999998731 1122222222211122 345555555 567899999999875433 467888999 Q ss_pred CceeEecccCCceEE-ec-cCCCCceeecCCCeEEEeecCC----CCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcC Q lcl|Aclame:pro 158 QSWFQLNPEDQNELR-LR-DNSPAGEALQPFGWIIHRPRAR----SGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYG 231 (526) Q Consensus 158 ~~~f~~~~~~~~~l~-~~-~~~~~g~~lp~~k~i~~~~~~~----~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G 231 (526) +.++++..+++.... .. ........+++...+++++... .+..+|.|.+..+....-......++...+...-+ T Consensus 117 ~~~v~i~~~~~~~~y~~~~~~~~~~~~~~~~evih~~~~~~~~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~ 196 (359) T protein:vir:10 117 SNAITIDLTDDTLTYEVNQFDDYPSAKYNASEMIHVKIMAYGVDTLHNLVGHSPLESLTSEIGQQKEANRLSLSTLKGAL 196 (359) T ss_pred CceEEEEEcCCeEEEEEEecCCceEEEEcccceEEeccCCCCCCccCccccccHHHHHHHHHHHHHHHHHHHHHHHhccC Confidence 988887665544222 21 1234456678877666654432 24457999999999888888888999999998888 Q ss_pred CceEEEecCC-CCCHHHHHHHHHHHHHhhc--C--eEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhh Q lcl|Aclame:pro 232 LPIRLGKYPP-GTADEEKATLLRAVTGLGH--A--AAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLT 306 (526) Q Consensus 232 ~P~~vgk~~~-~~~~~e~~~l~~al~~~~~--~--~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtlt 306 (526) .|--+.++|. ..++++++.+.+.+.+..+ + ..+|++.|++++-++.+. .-..|.+..++..++|++++..+.-- T Consensus 197 ~~~gil~~~~~~l~~e~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~-~d~q~le~~~~~~~~Ia~~fgVPp~~ 275 (359) T protein:vir:10 197 NPTSVVKVPQGTLSSEAKDSIRKEFEKANGGNNSGRVMVLDQSADFSTVSINA-DVANYLNSMNWGRTQIAKAFGVSDSY 275 (359) T ss_pred CcceEEEeCCCCCCHHHHHHHHHHHHHHhCccccCCceecCCCcceeeecCCH-HHHHHHHHHHHHHHHHHHHhCCCHHH Confidence 8999999986 4578888888888776542 2 368899999887775432 22247788899999999998766544 Q ss_pred cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHH Q lcl|Aclame:pro 307 STTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPA 386 (526) Q Consensus 307 t~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~ 386 (526) .+...+..++++. + ++.....+.--...++..|+..+.+.+ .++... .+.+ |...+...+.+ T Consensus 276 lg~~~~~~~~~~~--~-e~~~~~~l~~~l~p~~~~l~~~l~~~~-~~~~~~--------~~~~------d~~~~~~~~~~ 337 (359) T protein:vir:10 276 LNGTGDQQSSLDQ--I-KDLYVNALNRFIEPLISELRIKCDSSI-GVDMSP--------ITDY------SNSVFKADILN 337 (359) T ss_pred hCCCCcccccHHH--H-HHHHHHHHHHHHHHHHHHHHHHhhhhh-cccchh--------hhhc------CHHHHHHHHHH Confidence 3211111122222 2 222223333344455555555443322 222110 1222 23455666778 Q ss_pred HHhCCCcCCHHHHHHHhCCCCCC Q lcl|Aclame:pro 387 LVNVGLEIPSAWVYDKLGIPQPA 409 (526) Q Consensus 387 l~~~G~~v~~~~~~e~~Glp~~~ 409 (526) +++.|+ ++.+++|+.+|+|+-- T Consensus 338 ~~~~G~-~t~NE~R~~l~~~pv~ 359 (359) T protein:vir:10 338 WVKEGI-IEPTEAKTLLESKGII 359 (359) T ss_pred HHhCCC-cCHHHHHHHhCCCCCC Confidence 899998 8999999999997644 No 93 >protein:vir:9641 Length: 395 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795403;genbank:gi:28876176;genbank:GeneID:1257709 Probab=99.64 E-value=3.5e-15 Score=99.87 Aligned_cols=373 Identities=8% Similarity=0.004 Sum_probs=197.2 Q ss_pred hhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHH Q lcl|Aclame:pro 26 AGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKAD 105 (526) Q Consensus 26 ~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~ 105 (526) =|+.+.+.......++.. + +..........+..+-+.|.+|+..+...|.+++|.|.-.+.....+. T Consensus 1 Mgl~d~~~~~~~~~~~~~---------~--~~~~~~~~~~~~~l~~~~v~~~i~~Ia~~ia~lp~~v~~~~~~~~~~~-- 67 (395) T protein:vir:96 1 MGILDFFSFKKSGTLSDD---------D--SGSTTSEKLTNVVLKEDALYKCVNYLARIISKSTFRIKAPEKLTENQK-- 67 (395) T ss_pred CcchhhhcCCCCcccccc---------c--cccchhhhcchhhhhhHHHHHHHHHHHHhhccceeEEEeCCccccccc-- Confidence 122222211111111100 0 111111222333335678999999999999999999986543322222 Q ss_pred HHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCceeEecccCCceEEeccCCCCc Q lcl|Aclame:pro 106 ADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQSWFQLNPEDQNELRLRDNSPAG 180 (526) Q Consensus 106 a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~~~~~~~~l~~~~~~~~g 180 (526) -+..+|+..| ...++++.++ +.+++|.+.+.+.++ ++ ..+.....+.... .+. .-......+.... T Consensus 68 --~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~~~~~--~~-~~~~~~~~~~~~~---~~~-~~~~v~~~~~~~~ 138 (395) T protein:vir:96 68 --DWLYWINTKANPNQSASQFWVEVVQKLLVDGETLIFVIPG--KG-IYVADAFTQDKKL---SGN-KFKVSRVQGQTYE 138 (395) T ss_pred --hHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEcC--Cc-eecCCcccccccc---ccc-eeeeeeeccceee Confidence 2334444322 2345555544 567789998877543 22 2222211111100 000 0000011111112 Q ss_pred eeecCCCeEEEeecCCCCccccchhHHHH------HHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHH Q lcl|Aclame:pro 181 EALQPFGWIIHRPRARSGYVARSGLFRVL------AWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRA 254 (526) Q Consensus 181 ~~lp~~k~i~~~~~~~~g~p~g~gLl~~~------~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~a 254 (526) ..+++...+++++....+.+++.|+.... ......+.+..++...+....|.|.-+-+++....++.+++..+. T Consensus 139 ~~~~~~dvih~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (395) T protein:vir:96 139 KIFTFDQVIYLKNDNSDLMLKVESLWEEYGELLGHVINNQKIANQIRFTMTPPKDKVRERAQENSDGGRQPKSDKDFFKR 218 (395) T ss_pred eEeccCceEEecccCCccccccccccchHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeccCchhhHHHHHHHHHH Confidence 34677776666666555566666653322 122233444556667777777777777777666666666666665 Q ss_pred HHHh-hcCe--EEEecCCceEEEeecCCCCh-----HHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhh-HHHHH Q lcl|Aclame:pro 255 VTGL-GHAA--AGIIPETMAIDFQQAAQGSS-----EPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALG-QVHNE 325 (526) Q Consensus 255 l~~~-~~~~--~~iip~~~~ie~~~a~~~~~-----~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~-~vh~~ 325 (526) ..+. .+++ +++++.|++++-+..+.... ..|..+...+-++|++++..+.--.+ |+++.. +.... T Consensus 219 ~~~~~~~~~~~v~~l~~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~~~eIa~~fgVPp~~l~------~~~sn~e~~~~~ 292 (395) T protein:vir:96 219 TIEKIRTESVVGIPVTANTNYEEYGSKNTGSVKSYVDDIKKLKDQYMAEFAEMLGIPISLLH------GDIADNQKNYEL 292 (395) T ss_pred HHHHhhcCCcceEEccCCceeEecccChhhhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhc------CCCccHHHHHHH Confidence 5433 3333 45567788776665432211 13455556677899999877654331 223322 23334 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCC Q lcl|Aclame:pro 326 VRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGI 405 (526) Q Consensus 326 v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Gl 405 (526) ....-+.-.++.|+..||+.|++.--. . ..-+|.++.....|.++++++++++++.|+ ++.+++|+.+|+ T Consensus 293 f~~~~L~P~~~~ie~~l~~~Ll~~~e~-~--------~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~-~T~NE~R~~~gl 362 (395) T protein:vir:96 293 LLEGPIESLITNIVDGLEYAIFDKSET-L--------EGSFIKVTGLKNYDLFSISSQADKLISSGF-VFIDEVREEIGL 362 (395) T ss_pred HHHHHHHHHHHHHHHHHHhhcCChhhh-c--------CceeEeecchhccCHHHHHHHHHHHHhCCC-cCHHHHHHHhCC Confidence 455678888899999999887653211 0 112466666677899999999999999997 899999999999 Q ss_pred CCCCc--cchhcccCCCcccccccccccccccccccccccccccc Q lcl|Aclame:pro 406 PQPAK--NEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQA 448 (526) Q Consensus 406 p~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (526) |+.++ ++....+..- .+.....+. ....+.. T Consensus 363 ~pi~~~~gD~~~~~~N~-~~~~~~gge-----------~~~~~~~ 395 (395) T protein:vir:96 363 PELPDGLGKVLYMTKNY-ESVLERGGE-----------VDEEVET 395 (395) T ss_pred CCCCCCCCceeeecccc-eechhccCC-----------CCCCCCC Confidence 98644 4444432211 111110000 0000000 No 94 >protein:vir:78310 Length: 376 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468642;genbank:gi:157325220;genbank:GeneID:5601655 Probab=99.62 E-value=1e-14 Score=97.28 Aligned_cols=357 Identities=9% Similarity=-0.024 Sum_probs=191.8 Q ss_pred ecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHHHHHH Q lcl|Aclame:pro 5 VDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSKRKRA 84 (526) Q Consensus 5 ~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~a 84 (526) -+-..+.+++... +.. . .+......+...-..+-+.|.+|++.+-.. T Consensus 1 Mg~f~~l~~~~~~------------------------~~~-~--------~~~~~~~~~~~~~~l~~~~v~~~i~~Ia~~ 47 (376) T protein:vir:78 1 MGFFSELFKRNKE------------------------IEW-M--------WDLDFLEDKTTKVYLKKMALNTCVKHIART 47 (376) T ss_pred CchhhhhhccCCc------------------------ccc-c--------cchhhccccchhhhhhhHHHHHHHHHHHHh Confidence 1111111111000 000 0 000001111111112467899999999999 Q ss_pred HhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCc Q lcl|Aclame:pro 85 ILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQS 159 (526) Q Consensus 85 v~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~ 159 (526) +.+++|.+...+ .+.+...... |+..| ...++++.++ +.+++|.+.+.+++. ++ ..+..+.++.+. T Consensus 48 ia~~p~~~~~~~--~~~~~~l~~l----l~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~~~r~--~~-~~~~~~~~~~~~ 118 (376) T protein:vir:78 48 IAKSDFRLKNGE--TSVRDKLYYK----LNIRPNTDMSSSSFWEKVIYKLIYDNECLIVLSDT--DD-FLIADSYVRKEF 118 (376) T ss_pred hcccceeecccc--ccccchHHHH----HhhccccCCCHHHHHHHHHHHHhHcCcEEEEEEeC--CC-eeeccceeeccc Confidence 999999987432 2222223333 33222 2445555544 567799998776543 22 344456666554 Q ss_pred eeEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCc-eEEEe Q lcl|Aclame:pro 160 WFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLP-IRLGK 238 (526) Q Consensus 160 ~f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P-~~vgk 238 (526) .+..+.... +. ..+......+++...+++++....+.+++.++...+.- .....+..+....|.+ ..+.+ T Consensus 119 ~~~~~~~~~--~~-~~~~~~~~~~~~~evih~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 189 (376) T protein:vir:78 119 AFFPDVFEG--VT-VKDYRYNRNFSMDDVIFLEYGNERLSAFTDGMFEDYGE------LFGKMIRAQMRNFQIRGAVNFK 189 (376) T ss_pred ceeeeeeee--ee-eecceeeeeeccccEEEeccCCCCchhhhhHHHHHHHH------HHHHHHHHHHhcCCCceeEEEc Confidence 443222111 11 11111123467777766676666666666665543321 1111222333334543 33455 Q ss_pred cCCCCCHHHHHHHHHHHHHhh----cCe--EEEecCCceEEEeecCCCC----hHHHHHHHHHHHHHHHHHHhchhhhcc Q lcl|Aclame:pro 239 YPPGTADEEKATLLRAVTGLG----HAA--AGIIPETMAIDFQQAAQGS----SEPFLAMMRQSEDAISKAVLGGTLTST 308 (526) Q Consensus 239 ~~~~~~~~e~~~l~~al~~~~----~~~--~~iip~~~~ie~~~a~~~~----~~~~~~li~~~d~~Isk~ilGqtltt~ 308 (526) ++...+++.++.+.+.+.+.. +++ +++++.|++++-++.+... ...|.+..++..++|++++..+.--.+ T Consensus 190 ~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVPp~~l~ 269 (376) T protein:vir:78 190 MAGVADKDKQTKLQEYIDKVYASFNNNEIAIVPQLEGFNYEEFGTTSVNNSQSFDEVKKLRKEMIDYVASILGIPSSLLH 269 (376) T ss_pred cCCCCCHHHHHHHHHHHHHHhccccccCcceEEcCCCceEEeeccCccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhC Confidence 565667777777777776552 233 4557889998887654322 135778888999999999876553221 Q ss_pred cccccchhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHH Q lcl|Aclame:pro 309 TSQSGGGAFALG-QVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPAL 387 (526) Q Consensus 309 ~~~~~~gS~a~~-~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l 387 (526) |+++.. +........-+.-.++.|+..+|+.++++- ..+-++.+...-..|.+++++++.++ T Consensus 270 ------~~~s~~e~~~~~f~~~~l~P~~~~ie~~l~~kll~~~-----------~~~~~~~~~~ll~~d~~~~~~~~~~~ 332 (376) T protein:vir:78 270 ------GDMADLSNNMKAYMEYCIDPLTKKLEDELNAKLFTFS-----------EFLAGEHIKIIHKKDIIENAEAVDKL 332 (376) T ss_pred ------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcc-----------cceecccchhhcccCHHHHHHHHHHH Confidence 223222 222344556677888999999998875431 11223334444467899999999999 Q ss_pred HhCCCcCCHHHHHHHhCCCCCCcc--chhcccCCCccccccccccccc Q lcl|Aclame:pro 388 VNVGLEIPSAWVYDKLGIPQPAKN--EPVLRSAAQPAILSRQHGQRVA 433 (526) Q Consensus 388 ~~~G~~v~~~~~~e~~Glp~~~~~--e~~~~~~~~~~~~~~~~~~~~~ 433 (526) ++.|+ ++.+++|+.+|+|+-+++ +....+... .+...... .+ T Consensus 333 ~~~G~-~t~NE~R~~lg~~p~~~g~~d~~~~~~n~-~~~~~~~e--~g 376 (376) T protein:vir:78 333 VASGS-FNRNEVRELLGAERVDNPELDKYLITKNY-QSADEGGE--DG 376 (376) T ss_pred HhCCC-cCHHHHHHHhCCCCCCCCCCceeeeccCc-eehhcccc--CC Confidence 99997 899999999999986655 333322111 11110000 00 No 95 >protein:vir:4089 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510984;swissprot:trembl:q8w606;genbank:gi:17488506;uniprot:Q8W606;genbank:GeneID:1260314 Probab=99.62 E-value=1.6e-14 Score=96.18 Aligned_cols=373 Identities=11% Similarity=0.008 Sum_probs=186.1 Q ss_pred CCeeecC----CCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHH Q lcl|Aclame:pro 1 MAQIVDV----YGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFA 76 (526) Q Consensus 1 m~~~~~~----~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s 76 (526) |+ |++. .|...+...+. .+..+.. . ...+.+...+-+.|.+ T Consensus 1 Mg-~~~~~~~~~~~~~~~~~~~------------~~~~~~~----------------~------~~~~~~~~l~~~~v~~ 45 (395) T protein:vir:40 1 MG-FKSWVSGFFNEEQRTLNLT------------DTVWCSI----------------P------SEKLKELSIKKWAIDS 45 (395) T ss_pred Cc-hHHHHHhhhcccccccccc------------cchhhcc----------------c------cccchhhhhhhHHHHH Confidence 55 2222 22211111000 0100000 0 0011111124678999 Q ss_pred HHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEe Q lcl|Aclame:pro 77 EMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPL 151 (526) Q Consensus 77 ~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~ 151 (526) |+..+...|.+++|.+...++ +.... +...|+..| ...++++.+. +.+.+|.+.+.+.. ++.+.+. T Consensus 46 ~v~~Ia~~ia~~p~~~~~~~~--~~~~~----~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~~~~---~~~~~~~ 116 (395) T protein:vir:40 46 CANKIANTLSCAEVLTYEKGE--EVRKK----NWYMFNVEANQNQNATEFWKKAIYKLVYDNEALIFMQD---EYIYVAD 116 (395) T ss_pred HHHHHHHHHhhCceeeccCCc--cccch----HHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEec---CceeecC Confidence 999999999999999875322 22222 233444333 2455555544 57789998866532 3333332 Q ss_pred eeeeecCceeEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcC Q lcl|Aclame:pro 152 AFHHRPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYG 231 (526) Q Consensus 152 ~l~~r~~~~f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G 231 (526) .+....... +...- ..+. ..+-.....+++...+++++....+.+++.++...+.-. +... ...+....+ T Consensus 117 ~~~~~~~~~--~~~~~-~~v~-~~~~~~~~~~~~~evih~r~~~~~~~~~~~~l~~~~~~~--~~~~----~~~~~~~~~ 186 (395) T protein:vir:40 117 SFTKNDKSL--YENTY-TEVT-LKDLTLKKEFKESEVLHLTLNNESIKSIIDGFYLLYGDL--LTAA----VNKYKKLNS 186 (395) T ss_pred Ccccccccc--cccee-eeee-ecCceeeeeeccccEEEeecCCCCccccchhHHHHHHHH--HHHH----HHHHHhcCC Confidence 222111100 00000 0010 111111234677777777776667777777776543321 1111 112222222 Q ss_pred -CceEEEecCCCCCHHHHHHHHHHHHHh----hcC--eEEEecCCceEEEeecCCCChHHHHH---HHHHHHHHHHHHHh Q lcl|Aclame:pro 232 -LPIRLGKYPPGTADEEKATLLRAVTGL----GHA--AAGIIPETMAIDFQQAAQGSSEPFLA---MMRQSEDAISKAVL 301 (526) Q Consensus 232 -~P~~vgk~~~~~~~~e~~~l~~al~~~----~~~--~~~iip~~~~ie~~~a~~~~~~~~~~---li~~~d~~Isk~il 301 (526) .|..+.+++...+++.++++.+.+... .++ .+++++.|++++-+..+.... .|.+ +.+.+-++|++++. T Consensus 187 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~-q~~e~~~~~~~~~~~Ia~~fg 265 (395) T protein:vir:40 187 RKIIVKLKAMFGQTPEAEEKLRLMLSERMKKFLAEGDSALPVEDGMEIDELAGDSKIA-ESRDIKKMIDDVFEMVANSFN 265 (395) T ss_pred CCceEEEecccCCCHHHHHHHHHHHHHHHHHhhccCCceeecCCCceEEeccCChhhh-hHHHHHHHHHHHHHHHHHHhC Confidence 355556677777777666655555433 223 467788998887776432222 2433 33444579999987 Q ss_pred chhhhcccccccchhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHH Q lcl|Aclame:pro 302 GGTLTSTTSQSGGGAFAL-GQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSM 380 (526) Q Consensus 302 Gqtltt~~~~~~~gS~a~-~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~ 380 (526) .+.--.+ |+++. .+........-+.-.++.|+..||+.|++.--... ..+-+|.++.....|.+++ T Consensus 266 VPp~~l~------~~~sn~e~~~~~f~~~~L~P~~~~ie~~l~~kLl~~~~~~~-------g~~i~fd~~~ll~~d~~~~ 332 (395) T protein:vir:40 266 IPLGLAK------GDTVGLSEQVNSFLMFSINPIAEMFTDEGNRKFYGRDSVLE-------RTYMKLDTTRIKVQDIQEI 332 (395) T ss_pred CCHHHhc------CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcC-------CceEEEechhhhccCHHHH Confidence 6543331 23332 22233334567778888999999988865332111 1123444445556789999 Q ss_pred HHHHHHHHhCCCcCCHHHHHHHhCCCCCCc--cchhcccCCCcccccccccccccccccccccccccccc Q lcl|Aclame:pro 381 AQSIPALVNVGLEIPSAWVYDKLGIPQPAK--NEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQA 448 (526) Q Consensus 381 a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (526) ++.+.++++.|+ ++.+++|+.+|+|+-+. ++....+.... +.........+. ........ . T Consensus 333 ~~~~~~~~~~G~-~t~NE~R~~~g~~pi~~~~gD~~~~~~n~~-~~~~~~~~~kgg--e~~~~~~~---~ 395 (395) T protein:vir:40 333 ASSMDVLFHIGV-NTIDDNLRMIGREPVMSPETQERFVTKNYA-PLGENEEDLKGG--DINENKGD---S 395 (395) T ss_pred HHHHHHHHhCCC-CCHHHHHHHhCCCCCCCCCCceeeeccccc-cccccccccCCC--CCCCCcCC---C Confidence 999999999997 99999999999987643 33332222111 111100000000 00000000 0 No 96 >protein:vir:98643 Length: 395 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039921;genbank:gi:126011096;genbank:GeneID:4818479 Probab=99.56 E-value=5.7e-14 Score=93.19 Aligned_cols=373 Identities=8% Similarity=0.042 Sum_probs=188.7 Q ss_pred hhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHH Q lcl|Aclame:pro 26 AGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKAD 105 (526) Q Consensus 26 ~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~ 105 (526) =|+.+.+.......++ ...+.........+...+-+.|.+|+...-..|.+++|.+...+++...+..+ T Consensus 1 MGlf~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~v~~~I~~ia~~iA~lp~~~~~~~~~~~~~~~~ 69 (395) T protein:vir:98 1 MGILDFFSFKKSGTLS-----------DDDSGSTTSEKLTNVVLKEDALYKCVNYLARIISKSTFRLKTPEKLTENQKDW 69 (395) T ss_pred CcchhhhcCCCccccc-----------ccccchhhhhhcchhhhhhHHHHHHHHHHHHHHhhCceeEEecCCcccccchH Confidence 1111111000000000 00111222222333333578899999999999999999998655443322223 Q ss_pred HHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCceeEecccCCceEEeccCCCCc Q lcl|Aclame:pro 106 ADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQSWFQLNPEDQNELRLRDNSPAG 180 (526) Q Consensus 106 a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~~~~~~~~l~~~~~~~~g 180 (526) ..+|+..| ...++++.+. +.+.+|.+.+.++.. ++.+.+... .+.... .... -.-......... T Consensus 70 ----~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~~~~--~~~~~~~~~-~~~~~~---~~~~-~~~~~~~~~~~~ 138 (395) T protein:vir:98 70 ----LYWINTKANPNQSASQFWVEVIQKLLVDGETLIFVIPG--KGIYVADSF-TQDKKI---SGSQ-FKVSRVQGQTYE 138 (395) T ss_pred ----HHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeC--CceecCCcc-cccccc---cCcc-cceeeecCceee Confidence 33343322 2345555544 567799998877653 332322111 111100 0000 000011111112 Q ss_pred eeecCCCeEEEeecCCCCccccchhHHHHHHHH--HHHHHHHHHHHHHHHHcCCceEEEecCCCCC-HHH---HHHH-HH Q lcl|Aclame:pro 181 EALQPFGWIIHRPRARSGYVARSGLFRVLAWPY--LFRHYATSDLAEMLEIYGLPIRLGKYPPGTA-DEE---KATL-LR 253 (526) Q Consensus 181 ~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~--~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~-~~e---~~~l-~~ 253 (526) ..+++...+++++....+.+++.|+........ .........-..+....+.+..+.+++.... ++. .++. .+ T Consensus 139 ~~~~~~evih~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (395) T protein:vir:98 139 KTFTFDQVIYLKNDNSDLMSKVESLWEEYGELLGHVINNQKIANQIRFTMIPPKDKVRERAQENSDGGRQSKSDKDFFKR 218 (395) T ss_pred eEecCccEEEecCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCcHHHHHHHHHHHHH Confidence 456777777777666667777777765332211 1111111112234444444444444433222 222 2222 22 Q ss_pred HHHHhhcCe--EEEecCCceEEEeecCCC-----ChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHH-HHH Q lcl|Aclame:pro 254 AVTGLGHAA--AGIIPETMAIDFQQAAQG-----SSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQV-HNE 325 (526) Q Consensus 254 al~~~~~~~--~~iip~~~~ie~~~a~~~-----~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~v-h~~ 325 (526) ......+++ +++++.|++++-++.+.. ....|.+..++..++|++++..+.--.+ |+++..+- ... T Consensus 219 ~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVP~~~l~------~~~sn~e~~~~~ 292 (395) T protein:vir:98 219 TVEKIRTESVVGIPVTANTNYEEYGSKNTGAVKSYVDDIKKLKDQYMAEFAEMLGIPISLLH------GDIADNQKNYEL 292 (395) T ss_pred HHhhhhcCCcceeecCCCceeEecccccccccChhHHHHHHHHHHHHHHHHHHhCCCHHHhc------CCcccHHHHHHH Confidence 233322333 455678888766654321 1225777788888999999877654331 33332222 234 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCC Q lcl|Aclame:pro 326 VRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGI 405 (526) Q Consensus 326 v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Gl 405 (526) ....-+...++.|+..||+.|+++-.. . ..-+|.++.....|.+++++.+.++++.|+ ++.+++|+.+|+ T Consensus 293 f~~~tl~P~~~~ie~~l~~kll~~~~~-~--------~g~~f~~~~l~~~d~~~~~~~~~~~~~~G~-~T~NE~R~~~g~ 362 (395) T protein:vir:98 293 LLEGPIESLITNIVDGLEYAIFDKSET-L--------QGSFIKVTGLKNYDLFSISNQADKLISSGF-VFIDEVREEIGL 362 (395) T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhh-c--------CcceeeehhhhccCHHHHHHHHHHHHhCCC-cCHHHHHHHhCC Confidence 456678888999999999888754321 1 112467776777899999999999999997 999999999999 Q ss_pred CCCCc--cchhcccCCCcccccccccccccccccccccccccccc Q lcl|Aclame:pro 406 PQPAK--NEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQA 448 (526) Q Consensus 406 p~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (526) |+-++ ++....+..- .+.....+. .....+. T Consensus 363 ~Pi~~~~gD~~~~~~n~-~~~~~~gge-----------~~~~~~~ 395 (395) T protein:vir:98 363 PELPDGLGKVLYMTKNY-ESVLERGGE-----------VDEEVET 395 (395) T ss_pred CCCCCCCCceeeecccc-eecccccCC-----------CCCCCCC Confidence 87644 4444433221 111110000 0000000 No 97 >protein:vir:94002 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764318;genbank:gi:115315632;genbank:GeneID:5176589 Probab=99.53 E-value=1.1e-13 Score=91.74 Aligned_cols=361 Identities=9% Similarity=-0.019 Sum_probs=187.8 Q ss_pred hhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCceEecCCCCC-HHHH Q lcl|Aclame:pro 25 LAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSKRKRAILGLDWAVEPPRNAS-AAEK 103 (526) Q Consensus 25 ~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~-~~~~ 103 (526) ++-..+.++ ..++..+.. ...+..+. -+.....-+.|.+|+..+-..|.+++|.+.-....+ ..++ T Consensus 1 Mg~f~~~~~--~~~~~~~~~---------~~~~~~~~--~~~~~~~~~~v~~~v~~IA~~iA~lp~~~~~~~~~~~~~~~ 67 (378) T protein:vir:94 1 MNLFGKVVS--FSRGKLNND---------TQRVTAWQ--NEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDT 67 (378) T ss_pred CCccccchh--cccccccCC---------cceeeeec--cchhHHHHHHHHHHHHHHHhhhhhCceeeEEEcccCccccc Confidence 222222211 111111111 00111110 000111335789999999999999999865322111 1111 Q ss_pred ---HHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCceeEecccCCceEEecc Q lcl|Aclame:pro 104 ---ADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQSWFQLNPEDQNELRLRD 175 (526) Q Consensus 104 ---~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~~~~~~~~l~~~~ 175 (526) ....-+.++|+..| ...++++.++ +.+.+|.+.+.++|....+.++. +.+. T Consensus 68 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~~~~~g~~~~--l~p~------------------- 126 (378) T protein:vir:94 68 LISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLD--LLFA------------------- 126 (378) T ss_pred ccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeeCCCceEEE--EEec------------------- Confidence 11123344454333 2345555444 67889999998887654443321 1110 Q ss_pred CCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHH----HH Q lcl|Aclame:pro 176 NSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKA----TL 251 (526) Q Consensus 176 ~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~----~l 251 (526) ..+..+++...+ |.....+ .-.|.|++..+.-.. ..+. +.|.|--+.+++...+++..+ ++ T Consensus 127 --~~~~~~~~~dii-H~~~~~~-~~~g~s~l~~~~~~i----------~~~~-~~~~~~gil~~~~~l~~~~~~~~~~~~ 191 (378) T protein:vir:94 127 --DDKKEYKPEELV-RLTSPFY-INEDTSILDNALASI----------QTKL-EQGKLRGLLKINAFLDIDNTQEYREKA 191 (378) T ss_pred --CCeeEeeeeeeE-EecCcCC-ccchhHHHHHHHHHH----------HHHH-hcccccceeeeCCcCCHHHHHHHHHHH Confidence 112234555544 4433322 234777776654321 1111 235666677887766655444 44 Q ss_pred HHHHHHhh----cCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHH Q lcl|Aclame:pro 252 LRAVTGLG----HAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVR 327 (526) Q Consensus 252 ~~al~~~~----~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~ 327 (526) .+.+.+.. +...++++.|++++-+..+.... .+. -.++..++|++++..+.--.. |+++ .+...... T Consensus 192 ~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~-~~~-~~~~~~~~Ia~~fgVP~~~l~------~~~s-e~~~~~f~ 262 (378) T protein:vir:94 192 LTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVL-NKD-EIDLIKSELLTGYFMNENILL------GTAS-QEQQIYFY 262 (378) T ss_pred HHHHHHhhcccccccceecCCCceEEEccCChhhh-hHH-HHHHHHHHHHHHhCCCHHHhc------CChH-HHHHHHHH Confidence 44444432 22468888888877665433222 244 357888999999877643221 2333 23344455 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCC Q lcl|Aclame:pro 328 HDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQ 407 (526) Q Consensus 328 ~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~ 407 (526) ..-+...++.|+..||+.|+++--...+.+. .....++|.++.....|.+++++.+.++++.|+ ++.+++|+.+|+|+ T Consensus 263 ~~tL~P~~~~ie~~l~~~Ll~~~er~~g~~~-~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~-~T~NE~R~~~gl~p 340 (378) T protein:vir:94 263 NSTIIPLLIQLEKELTYKLISTNRRRVVKGN-LYYERIIVDNQLFKFATLKELIDLYHENINGPI-FTQNQLLVKMGEQP 340 (378) T ss_pred HHHHHHHHHHHHHHHHhhcCChhHhhhhhhc-ccccceeecchhhhhcCHHHHHHHHHHHHhCCC-cCHHHHHHHhCCCC Confidence 6778888999999999988865332211110 001124455566667899999999999999997 99999999999998 Q ss_pred CCccchhcccCCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 408 PAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQ 447 (526) Q Consensus 408 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (526) .+.++....+....+....... +.. ............. T Consensus 341 ~~gGD~~~~~~n~~~~~~~~~~-~~~-~~~~~~~~e~~n~ 378 (378) T protein:vir:94 341 IEGGDVYIANLNAVAVKNLSDL-QGS-RKDVTSTDETNNQ 378 (378) T ss_pred CCCCCeeeecccccccccchhh-cCC-cCCCCCCCCCCCC Confidence 8877766544332211111000 000 0011111111111 No 98 >protein:vir:93867 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764264;genbank:gi:115315577;genbank:GeneID:5141561 Probab=99.51 E-value=2.8e-13 Score=89.40 Aligned_cols=360 Identities=9% Similarity=-0.017 Sum_probs=185.3 Q ss_pred hhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHH- Q lcl|Aclame:pro 25 LAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEK- 103 (526) Q Consensus 25 ~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~- 103 (526) ++-..+..+ ..++..+.. .+....+.. +....+-+.|.+|+..+...|.+++|.+.-..+...... T Consensus 1 Mg~f~~~~~--f~~~~~~~~---------~~~~~~~~~--~~~~~~~~~v~~~i~~Ia~~iA~lp~~~~~~~~~~~~~~~ 67 (378) T protein:vir:93 1 MNLFGKVVS--FSRGKLNND---------TQRVTAWQN--EAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDT 67 (378) T ss_pred Cccchhhhh--hhccccCCC---------cceeeeccc--chhHHHHHHHHHHHHHHHhhhhhCceeeEEEccccccccc Confidence 221111111 111111111 111111100 000113457999999999999999998754332211111 Q ss_pred ---HHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCceeEecccCCceEEecc Q lcl|Aclame:pro 104 ---ADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQSWFQLNPEDQNELRLRD 175 (526) Q Consensus 104 ---~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~~~~~~~~l~~~~ 175 (526) ....-+..+|+..| ...++++.+. +.+.+|.+.+.+++....|... .+.+ T Consensus 68 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~i~~~~~~~~g~~~--~l~~-------------------- 125 (378) T protein:vir:93 68 LISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGELL--DLLF-------------------- 125 (378) T ss_pred ccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCceEE--EEEe-------------------- Confidence 11123344454322 2345555444 6788999998877654333322 1111 Q ss_pred CCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHH--- Q lcl|Aclame:pro 176 NSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLL--- 252 (526) Q Consensus 176 ~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~--- 252 (526) ...+..+++...+ |..... +.-.|.|++..+.-. ...+.. .|.|--+.+++...+++..+.+. T Consensus 126 -~~~~~~~~~~dii-h~r~~~-~~~~~~s~l~~~~~~----------i~~~~~-~~~~~g~l~~~~~l~~~~~~~~~~~~ 191 (378) T protein:vir:93 126 -ADDKKEYKTEELV-RLTSPF-YINEDTSILDNALAS----------IQTKLE-QGKLRGLLKINAFLDIDNTQEYREKA 191 (378) T ss_pred -cCCeeEeccceeE-EecCcc-ccchhhHHHHHHHHH----------HHHHHh-cCcccceeeeCCcCCHHHHHHHHHHH Confidence 1123445666544 443222 222366666655422 122332 45666677777666665544443 Q ss_pred -HHHHHhh----cCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHH Q lcl|Aclame:pro 253 -RAVTGLG----HAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVR 327 (526) Q Consensus 253 -~al~~~~----~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~ 327 (526) +.+.+.. +...++++.|++++-++.+.... .+ ...++..++|++++..+.--.. |+++- +...... T Consensus 192 ~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~-~~-~~~~~~~~~Ia~~fgVPp~~l~------g~~~e-~~~~~f~ 262 (378) T protein:vir:93 192 LTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVL-NK-DEIDLIKSELLTGYFMNENILL------GTATQ-EQQIYFY 262 (378) T ss_pred HHHHHHhhcccccccceEcCCCceEEEccCChhhh-hH-HHHHHHHHHHHHHhCCCHHHhc------CCcHH-HHHHHHH Confidence 4443332 22467888888877665433222 24 3457889999999877642221 23331 2333445 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCC Q lcl|Aclame:pro 328 HDLLASDARQLAATLSRDLLWPLLV-LNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIP 406 (526) Q Consensus 328 ~~~~~ad~~~i~~~ln~~li~~l~~-~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp 406 (526) ..-+...++.|+..||+.|+..--. ..+... .....+|.++.....|++++++++.++++.|+ ++.+++|+++|+| T Consensus 263 ~~tl~P~~~~ie~~l~~kLl~~~er~~~~~~~--~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~-~t~NE~R~~~gl~ 339 (378) T protein:vir:93 263 NSTIIPLLIQLEKELTYKLISTNRRRVVKGNL--YYERIIVDNQLFKFATLKELIDLYHENINGPI-FTQNQLLVKMGEQ 339 (378) T ss_pred HHHHHHHHHHHHHHHHhhcCChhHhhhhhhcc--cccceeeccchhhhcCHHHHHHHHHHHHhCCC-cCHHHHHHHhCCC Confidence 5778889999999999988854321 111100 01124455666677899999999999999997 9999999999999 Q ss_pred CCCccchhcccCCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 407 QPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQ 447 (526) Q Consensus 407 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (526) +.+.++....+....+....... ..+ ............. T Consensus 340 p~~ggD~~~~~~n~~~~~~~~~~-~~~-~~~~~~~~e~~n~ 378 (378) T protein:vir:93 340 PIEGGDVYIANLNAVAVKNLSDL-QGS-RKDVTSTDETNNQ 378 (378) T ss_pred CCCCCCeeeeccccccccchhhh-cCc-cCCCCCCCCCCCC Confidence 88777765543322111111100 000 0011111111111 No 99 >protein:vir:107742 Length: 537 # NCBI annotation: gp28 # Family: family:all:297 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024875;genbank:gi:48697517;genbank:GeneID:2948359 Probab=99.47 E-value=6.3e-12 Score=81.98 Aligned_cols=439 Identities=8% Similarity=-0.025 Sum_probs=206.1 Q ss_pred CCe----------------------eecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccC--HHHHHHHHHcccCCC Q lcl|Aclame:pro 1 MAQ----------------------IVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLT--PAKLARILVEAEQGN 56 (526) Q Consensus 1 m~~----------------------~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~~a~~g~ 56 (526) |+. +-.+...-+.+..-..+..+.- +...........+-+ +..+.. ..-..+ T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 100 (537) T protein:vir:10 25 VGIFGAGDDEKPFTRAQLVHQTMMAIRDHAIAMMPKVDGSHPDMAMD-GLDVEGGTFSAYANPNLSEGLVL---WYAQQA 100 (537) T ss_pred cCCCcccchhhHHHHHHhhhhccCCCCCccCcccccccccccchhcc-ccccchhhhhhhccccccchhhh---hccccC Confidence 221 1111100000000000000000 000000000000000 000000 000111 Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhccee Q lcl|Aclame:pro 57 LQAQAELFMDMEERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSC 136 (526) Q Consensus 57 ~~~~~~l~~~m~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~ 136 (526) +.- +.++ .+..+.+-++.++++.-.-.++..|.|.-.+++.. +.+..+.++..++++.-+..+...+-.+.+||.++ T Consensus 101 ~~~-~~l~-a~Y~~~~l~r~iVd~~A~d~~r~~~~i~~~~~~~~-~~~~~~~l~~~~~~l~~~~~l~~a~~~~rlyG~~~ 177 (537) T protein:vir:10 101 FIG-HQMC-ALIATHWLVNKACSQMPRDAMRKGYKIISDDGNEL-DPKDAKFIDRYDRAFNIKKHAIQFVRKGRIFGIRI 177 (537) T ss_pred Ccc-HHHH-HHHHhCchhhhhhhhhhHHhhcCCceeecCCcccc-cHHHHHHHHHHHHHhhHHHHHHHHHHhcccccceE Confidence 221 2333 23457999999999998888888888875443222 22334556666666643455555555788999876 Q ss_pred eeEEEeecCC-ee------------EEeeeeeecCceeEecccC---C-----ceEEeccCCCCceeecCCCeEEEeecC Q lcl|Aclame:pro 137 IELEWALQGR-EW------------MPLAFHHRPQSWFQLNPED---Q-----NELRLRDNSPAGEALQPFGWIIHRPRA 195 (526) Q Consensus 137 ~Ei~w~~~~g-~~------------~~~~l~~r~~~~f~~~~~~---~-----~~l~~~~~~~~g~~lp~~k~i~~~~~~ 195 (526) +=+.=...++ .+ .++.|...++.|......+ . .......-...+..+.+.+.+++.... T Consensus 178 i~i~v~~~D~~~~~~Pl~~~~i~kg~~k~l~vidp~~~~~~~~~~~~~dp~sp~fg~P~~y~v~g~~iH~SRli~f~g~~ 257 (537) T protein:vir:10 178 ALFKVDSPDPYYYEKPFNIDGVMPGAYKGIVQIDPYWCAPLLDAQASSNPVSMHFYEPTYWLINGKKYHRSHLAIYINDE 257 (537) T ss_pred EEEeecCcCCcccccccccccccccceeEEEEechhhcccccchhhhccCCccccCCceeeeecCeEecceeEEEecCCC Confidence 6443221111 11 1334555566555431110 0 000000001234567777776654331 Q ss_pred ------CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecC-CCCCHHHHHHHHHHHHHhhc-CeEEEec Q lcl|Aclame:pro 196 ------RSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYP-PGTADEEKATLLRAVTGLGH-AAAGIIP 267 (526) Q Consensus 196 ------~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~-~~~~~~e~~~l~~al~~~~~-~~~~iip 267 (526) ...+.+|.|++..+|....--.....--+..+.++.+++...+.. .-.+++....-.+.+..+.. .+.++++ T Consensus 258 ~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~~r~~~~~~~r~n~g~~~id 337 (537) T protein:vir:10 258 VVDFLKPSYIYGGVPLPQQIMERVYAAERTANEGPMLAMTKRQTVLKVDAAQVLANKQQFDETMSWWTATRDNYQVRVVD 337 (537) T ss_pred CchhhhcccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeechHHhhcCHHHHHHHHHHHHhhcCCcceeEec Confidence 223456999999999877655555555667777888664322211 11233334444444444444 4567777 Q ss_pred C-CceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 268 E-TMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDL 346 (526) Q Consensus 268 ~-~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~l 346 (526) . +.+++.+..+-++ -+.+++..-++||-+. |-.+|.--+...+|..|.|+-......+.+++-+..+...+++ + T Consensus 338 ~e~e~~e~~~~~lsg---l~~~l~~~~~~iAa~~-~IP~t~L~G~sp~GlnatGe~D~~~yyd~I~~~Qe~l~p~l~~-l 412 (537) T protein:vir:10 338 KDNEDVVQIDTTLND---LDKVIMNQYQLVCAIA-RTPAPKMLGTVPTGFNSTGDYEEASYHEECESTQDDMRPLIDR-H 412 (537) T ss_pred CCCceeEEEeccCCC---HHHHHHHHHHHHHhhh-CCCceeeccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHH-H Confidence 6 4888888754222 3456677777787774 3344422233334666777777888889999888888887764 7 Q ss_pred HHHHHHhcCCCCCCcccceeEEecCccccCHHH-------HHHHHHHHHhCCCcCCHHHHHHHhCCCCC---------Cc Q lcl|Aclame:pro 347 LWPLLVLNRPGSPDVRRAPRLVFDLREQADITS-------MAQSIPALVNVGLEIPSAWVYDKLGIPQP---------AK 410 (526) Q Consensus 347 i~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~-------~a~~~~~l~~~G~~v~~~~~~e~~Glp~~---------~~ 410 (526) +..|+...|+... .-.|+|..-...+-++ .+++++++++.|+ ++.+++|+.++-.+. .+ T Consensus 413 ~~ll~~~~~~~~~----~~~i~f~pL~~~s~kEkAei~~~~a~a~~~~~~~G~-i~~~Evr~~L~~~~~~g~~~l~~~~~ 487 (537) T protein:vir:10 413 HQLVCRSHLRKRI----RVKVEFPPMDAPKESERADTFLKKMQAAKLAFEMGA-VDGVDVNEYLRMDPTLGFTSITPAMR 487 (537) T ss_pred HHHHHHhcCCCCc----ceEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHhccCccccccccCCCC Confidence 7777777665422 1345666544444444 4456888888886 999999999764211 11 Q ss_pred cc---hhcc-cCCCcccccccccccccccccccccccccccchHHHHHHHHHHH Q lcl|Aclame:pro 411 NE---PVLR-SAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALADLPAKD 460 (526) Q Consensus 411 ~e---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (526) .+ +... ...++.......+..............+..+..-.+..+ + T Consensus 488 ~ed~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~ 537 (537) T protein:vir:10 488 PTDAEDIDVDDEGKPVRIIEDQPAPSEMFGATSSGESANDPRDSGAAFE----D 537 (537) T ss_pred hhhhhcccCCccCCcCCCCCCCCCccccCCCCccccccCCCccCccccC----C Confidence 11 1100 000000000000000000000000000000000000000 0 No 100 >protein:vir:1661 Length: 378 # NCBI annotation: unknown # Family: family:all:2379 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044950;genbank:gi:9629657;genbank:GeneID:1261302 Probab=99.47 E-value=1e-12 Score=86.26 Aligned_cols=361 Identities=9% Similarity=-0.007 Sum_probs=184.2 Q ss_pred hhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCceEecCCCCCHHH-- Q lcl|Aclame:pro 25 LAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAE-- 102 (526) Q Consensus 25 ~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~-- 102 (526) ++-.++..+ ..++..+. ..+....+. -+....+-+.|.+|+..+...|.+++|.+.-........ T Consensus 1 Mg~f~~~~~--~~~~~~~~---------~~~~~~~~~--~~~~~~~~~~v~~~i~~Ia~~iA~l~~~~~~~~~~~~~~~~ 67 (378) T protein:vir:16 1 MNLFGKVVS--FSRGKLNN---------DTQRVTAWQ--NEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDT 67 (378) T ss_pred Cccchhhhh--hhcccccC---------Ccceeeecc--cchhhHHHHHHHHHHHHHHhhhhhCceeEEEEccccccccc Confidence 221111111 11111111 111111110 000111345799999999999999999875332211110 Q ss_pred --HHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCceeEecccCCceEEecc Q lcl|Aclame:pro 103 --KADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQSWFQLNPEDQNELRLRD 175 (526) Q Consensus 103 --~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~~~~~~~~l~~~~ 175 (526) .....-+.++|+..| ...++++.++ +.+.+|.+.+.++|+-..+.+. .+.+- T Consensus 68 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~d~~~g~~~--~l~~~------------------- 126 (378) T protein:vir:16 68 LISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGELL--DLLFA------------------- 126 (378) T ss_pred ccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCceEE--EEEec------------------- Confidence 011223344454322 2345555444 5778999999988864433322 11111 Q ss_pred CCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHH----HHH Q lcl|Aclame:pro 176 NSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEK----ATL 251 (526) Q Consensus 176 ~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~----~~l 251 (526) ..+..+++.. |+|....-+ .-.|.|++..+.-. ...+.. .|.|--+.+++...+++.. +.+ T Consensus 127 --~~~~~~~~~d-iih~r~~~~-~~~~~s~l~~~~~~----------i~~~~~-~~~~~g~l~~~~~l~~~~~~~~~~~~ 191 (378) T protein:vir:16 127 --DDKKEYKPEE-LVRLTSPFY-INEDTSILDNALAS----------IQTKLE-QGKLRGLLKINAFLDIDNTQEYREKA 191 (378) T ss_pred --CCeeEecccc-eEEecCccC-ccchhHHHHHHHHH----------HHHHHh-cCccceeeEeCCcCCHHHHHHHHHHH Confidence 0112344444 444432222 22355555554422 122222 4556566777766565543 344 Q ss_pred HHHHHHhh----cCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHH Q lcl|Aclame:pro 252 LRAVTGLG----HAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVR 327 (526) Q Consensus 252 ~~al~~~~----~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~ 327 (526) .+.+.+.. +...++++.|++++-++.+.... .+.. .++..++|++++..+.--.. |+++- +...... T Consensus 192 ~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~-~~~~-~~~~~~~Ia~~fgVPp~~l~------g~~~e-~~~~~f~ 262 (378) T protein:vir:16 192 LTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVL-NKDE-IDLIKSELLTGYFMNENILL------GTASQ-EQQIYFY 262 (378) T ss_pred HHHHHHhhcccccccceEcCCCceEEEccCChhhh-hHHH-HHHHHHHHHHHhCCCHHHhc------CCchH-HHHHHHH Confidence 44444432 12467888888877665433222 2443 57888999999877653221 23332 2233344 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCC Q lcl|Aclame:pro 328 HDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQ 407 (526) Q Consensus 328 ~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~ 407 (526) ..-+...++.|+..||+.|+++--...+.+. ......+|.++.....|++++++.+.++++.|+ ++.+++|+++|+|+ T Consensus 263 ~~tl~P~~~~ie~~l~~kLl~~~e~~~~~~~-~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~-~T~NE~R~~~g~~p 340 (378) T protein:vir:16 263 NSTIIPLLIQLEKELTYKLISTNRRRVVKGN-LYYERIIVDNQLFKFATLKELIDLYHENINGPI-FTQNQLLVKMGEQP 340 (378) T ss_pred HHHHHHHHHHHHHHHHhhcCChhhhhhhhhc-ccccceeeccchhhhcCHHHHHHHHHHHHhCCC-cCHHHHHHHhCCCC Confidence 5678889999999999988765322111100 001123566666777899999999999999997 99999999999998 Q ss_pred CCccchhcccCCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 408 PAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQ 447 (526) Q Consensus 408 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (526) -+.++.+..+....+....... ... ............. T Consensus 341 ~~ggD~~~~~~n~~~~~~~~~~-~~~-~~~~~~~~e~~ne 378 (378) T protein:vir:16 341 IEGGDVYIANLNAVAVKNLSDL-QGS-RKDVTSTDETNNQ 378 (378) T ss_pred CCCCCeEeeccccccccchhhh-cCc-cCCCCCCCCCCCC Confidence 8777765544332211111110 110 0111111111111 No 101 >protein:vir:80040 Length: 461 # NCBI annotation: gp3 # Family: family:all:297 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468707;genbank:gi:157325287;genbank:GeneID:5601731 Probab=99.46 E-value=5.9e-12 Score=82.16 Aligned_cols=405 Identities=11% Similarity=0.018 Sum_probs=202.6 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHH-HHHHHHHHHHhccHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQ-AQAELFMDMEERDAHLFAEMS 79 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~-~~~~l~~~m~~~D~~v~s~l~ 79 (526) |+++ +-...+. +.+.+...... ..++....-.+.+.-..-|... .-+..++.+.++.+-++.+++ T Consensus 1 ~~~~--------~~a~~~~-----~~~~a~~~~~~-~~~~g~~~~~d~~~~~~~~~~~~~~~~~l~~lY~~~~l~r~iVd 66 (461) T protein:vir:80 1 MYSI--------DKAKQAK-----IDSKIVNRNDF-MVGHGKANSRDKLTRQTPGNGQKLDLKACENLYASNSIAMNIVD 66 (461) T ss_pred Cccc--------hhhhhhh-----hhhhhhhhhHH-HhhcCCcchhhhhhccccCcccccCHHHHHHHHHhCCccchhhc Confidence 7752 1111111 11111111111 1122111101111111111111 112333344457888999999 Q ss_pred HHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecCCee----------- Q lcl|Aclame:pro 80 KRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREW----------- 148 (526) Q Consensus 80 ~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~----------- 148 (526) +--.-.++..|.|.- ++ ....+.++++++++.-+..+...+-.+.+||.+.+=+.-.. ++.+ T Consensus 67 ~~a~d~~r~g~~i~~--~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~rl~G~a~i~i~v~d-~~~~~~~~~~pl~~~ 139 (461) T protein:vir:80 67 IISEDMVRAGWSLKT--DN----KEMKKNIESKWRKLKTKDRFQKLYADKRLYGDGFLSIGVVS-SNREQADLSTAIDPK 139 (461) T ss_pred cchHHhhcCCeeeec--CC----HHHHHHHHHHHHHhhHHHHHHHHHHhhcccccEEEEEEeec-CCccccCccCCcccc Confidence 999888988888862 22 12334455566655446666667778999999987764211 1100 Q ss_pred EEeeeeeec---Ccee-----Eecc---cCCc--eEEecc------------CCCCceeecCCCeEEEeecCCCCccccc Q lcl|Aclame:pro 149 MPLAFHHRP---QSWF-----QLNP---EDQN--ELRLRD------------NSPAGEALQPFGWIIHRPRARSGYVARS 203 (526) Q Consensus 149 ~~~~l~~r~---~~~f-----~~~~---~~~~--~l~~~~------------~~~~g~~lp~~k~i~~~~~~~~g~p~g~ 203 (526) .+..+.... +... .-++ +-+. .+...+ .+..+..+.+-+.+++.+..-.+..+|. T Consensus 140 ~~~~~~~l~~~~~~~i~~~~~~~dp~sp~fg~P~~y~i~~~~~~~~~~~~~~~~~~~~~iH~SRii~~~~~~~~~~~~G~ 219 (461) T protein:vir:80 140 TIKSIPYINTFNTQKVTQLYLNQDMFSEHFGEVEFFEVNRVSQLGEEILSGTTASTSEQIHRSRIIHEQGLRFEGETKGR 219 (461) T ss_pred cccceeEEEeccccccchhhhcccCcCcccccceEEEEeccccccccccccccCccceEEccccEEEecCCCCCccccCc Confidence 011121111 1100 0010 0001 011111 1122345788888888777777788899 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHh-hcCeEEEecCCceEEEeecCCCCh Q lcl|Aclame:pro 204 GLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGL-GHAAAGIIPETMAIDFQQAAQGSS 282 (526) Q Consensus 204 gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~-~~~~~~iip~~~~ie~~~a~~~~~ 282 (526) |++..+|....--......=+.++.++.+++.-.+-......++...+.+.+..+ ..++.+++..+.+++.++.+=++ T Consensus 220 S~le~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~e~~e~~~~~lsg- 298 (461) T protein:vir:80 220 SIFESLYDIITVMDTSLWSVGQILYDFAFKVYKTDDIDALNKDDKANLTAMLDFMFRTEALAIIKGDEQLTKESTNVSG- 298 (461) T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCCceecchHHhhhchHHHHHHHHHHHhcCCceEEEEcCCcceEEEecCcCC- Confidence 9999999888766666666777888888774433211111122333333333333 34577888999999988864332 Q ss_pred HHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCC Q lcl|Aclame:pro 283 EPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRP--GSPD 360 (526) Q Consensus 283 ~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~--~~~~ 360 (526) .+.+++..-.+||-+.--+ +|.--++.. |..|.|+-...+..+.+++.+.....-+.+.|++.|+.--++ +... T Consensus 299 --l~~~l~~~~~~iaa~s~iP-~t~L~G~s~-g~~asge~D~~~yyd~i~~~qe~~l~p~le~l~~~i~~s~~~~~~~~~ 374 (461) T protein:vir:80 299 --MKDLLDYGWDYLAGAVRMP-KTVLKGQEA-GTLTGAQYDVMNYYARVSSIQENRLRPQLEYLTRLLMWASDDCGPSID 374 (461) T ss_pred --HHHHHHHHHHHHhhhhcCC-eeeeecccC-CccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC Confidence 3456666777888775333 332222222 446777777788889999998765444445677777653333 2211 Q ss_pred cc-cceeEEecCccccCHH-------HHHHHHHHHHhCCCcCCHHHHHHH----hCCCCCCccc----hhcccCCCcccc Q lcl|Aclame:pro 361 VR-RAPRLVFDLREQADIT-------SMAQSIPALVNVGLEIPSAWVYDK----LGIPQPAKNE----PVLRSAAQPAIL 424 (526) Q Consensus 361 ~~-~~p~~~~~~~e~edl~-------~~a~~~~~l~~~G~~v~~~~~~e~----~Glp~~~~~e----~~~~~~~~~~~~ 424 (526) +. .--.|+|..-.+.+-+ ..+++++++++.|+ ++.+++|+. +|+.++..-. +........... T Consensus 375 p~~~~~~i~f~~L~~~s~kekAe~~~~~a~a~~~~~~~g~-is~~e~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (461) T protein:vir:80 375 PDSFEWAIEFNPLWNLDSKTDAEVRKLTAEADQIYIVNGV-LDPDEVKETRFGRFGLENSSKFSGDSAEIDKLAKLVYDA 453 (461) T ss_pred ccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhcCCCCCccCCCCCchhhhhhhhcccc Confidence 11 1124566544444433 44567888888887 888888764 4554332100 000000000000 Q ss_pred cccccccccccccccc Q lcl|Aclame:pro 425 SRQHGQRVAALATIVG 440 (526) Q Consensus 425 ~~~~~~~~~~~~~~~~ 440 (526) ++ .....+ T Consensus 454 ~~--------~e~~~g 461 (461) T protein:vir:80 454 YA--------KKNADG 461 (461) T ss_pred cc--------ccCCCC Confidence 00 000000 No 102 >protein:vir:78641 Length: 278 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429941;genbank:gi:156603995;genbank:GeneID:5525387 Probab=99.45 E-value=6.7e-13 Score=87.34 Aligned_cols=266 Identities=13% Similarity=0.034 Sum_probs=171.1 Q ss_pred HhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCc Q lcl|Aclame:pro 85 ILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQS 159 (526) Q Consensus 85 v~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~ 159 (526) |.+++|.+.-.... .+...+ ..|+..| .+.++++.++ +.+.+|.++++++...+| .+..|.+.++. T Consensus 1 ia~l~~~~~~~~~~--~~~~l~----~lL~~~PN~~~t~~~f~~~~~~~ll~~Gna~~~i~r~~~G---~~~~l~~l~~~ 71 (278) T protein:vir:78 1 MASLPLKMYEDYKV--VNTEVS----DLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYH---QPSKLFLLNPD 71 (278) T ss_pred CccceeEEEecCcc--cccHHH----HHHHhcCCCCCCHHHHHHHHHHHHhhcCCEEEEEEECCCC---cEEEEEEECCc Confidence 99999988743322 122233 3343322 3567777777 678899999999875443 36789999998 Q ss_pred eeEecccCCc-eEEeccC--CCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcC-CceE Q lcl|Aclame:pro 160 WFQLNPEDQN-ELRLRDN--SPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYG-LPIR 235 (526) Q Consensus 160 ~f~~~~~~~~-~l~~~~~--~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G-~P~~ 235 (526) +++...+... .+.+... .+....+++...+++++....+.++|.|.+..+....-...... .|.. .+++ .|.- T Consensus 72 ~v~v~~~~~~~~~~y~~~~~~g~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~-~~~~--~~~~~~~~~ 148 (278) T protein:vir:78 72 VVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVR-TFNL--TEMQKPDSF 148 (278) T ss_pred eeEEEEcCCCceEEEEEEcCCceEEEEccccEEEECCCCCCCCeeeccHHHHHHHHHHHHHHHH-HHHH--HHhcCCCcE Confidence 8877654432 2322222 22335577777665565545677899999999887666554443 3432 2333 4667 Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhcCe--EEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhccccccc Q lcl|Aclame:pro 236 LGKYPPGTADEEKATLLRAVTGLGHAA--AGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSG 313 (526) Q Consensus 236 vgk~~~~~~~~e~~~l~~al~~~~~~~--~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~ 313 (526) +.+.+...++++++++.+.+.+...++ .+++|.|++++-+..+ .....|.+..++..++|++++..+....+. .. T Consensus 149 i~~~~~~l~~e~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~-~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~--~~ 225 (278) T protein:vir:78 149 MLKYGSNVGKEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKK-YVSEDIVASENLTRERVANVFQLPSVFLNA--RS 225 (278) T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhccCCCceecCCCceEEEccCC-hhHHHHHHHHHHHHHHHHHHhCCCHHHhCC--CC Confidence 778888888999998888887765553 6777888877666533 333467888899999999998777544432 23 Q ss_pred chhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccc Q lcl|Aclame:pro 314 GGAFALGQVHN-EVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQ 374 (526) Q Consensus 314 ~gS~a~~~vh~-~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~ 374 (526) +++++..+.+. ......+...++.|++.||+.|+++--.. .+ -+|+|+...= T Consensus 226 ~~~~sn~~~~~~~~~~~~l~P~~~~i~~~ln~~L~~~~e~~-~g--------~~~~f~~~~l 278 (278) T protein:vir:78 226 NTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDRE-KI--------GILNLTLNLI 278 (278) T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhc-CC--------ceEEEecccC Confidence 35566555544 34556788999999999999887542111 11 1355543221 No 103 >protein:vir:858 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047117;genbank:gi:9630570;genbank:GeneID:1261758 Probab=99.43 E-value=3.3e-12 Score=83.53 Aligned_cols=358 Identities=8% Similarity=-0.045 Sum_probs=180.9 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+ |++. .+.+...+. ..+..+.+. .. ..+. ..+-+.|.+|+.. T Consensus 1 M~-~f~k---~~~~~~~~~-----~~~~~~~~~-----------------~~-~~~~----------~~~~~~v~~~v~~ 43 (378) T protein:vir:85 1 MN-LFGK---VVSFSRGKL-----NNDTQRVTA-----------------WQ-NEAV----------EYTSAFVTNIHNK 43 (378) T ss_pred Cc-hhhh---hhhhhhccc-----ccCCcceee-----------------ee-ccch----------hhhhHHHHHHHHH Confidence 66 3332 221111100 000000000 00 0010 0123568999999 Q ss_pred HHHHHhcCCceEecCCCCCHH----HHHHHHHHHHHHhcCcC----HHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEe Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAA----EKADADYLHELLLDLEG----LEDLLLDAL-DGIGHGYSCIELEWALQGREWMPL 151 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~----~~~~a~~v~~~l~~~~~----~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~ 151 (526) +-..|.++++.+.-...+... ....-.-+...|+..|+ ..++...+. +.+.+|.+.+.+++....|.+... T Consensus 44 ia~~iA~lp~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~~ 123 (378) T protein:vir:85 44 IANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSYKGEHNSMEFWQKVIKKLLCTRYVDLYPIFDSETGELLDL 123 (378) T ss_pred HHHhHhhCceeEEEEeccccccccccccccchHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEeecCCCceEEEE Confidence 999999999988643321110 01111223344543332 234444443 577899999887776555543211 Q ss_pred eeeeecCceeEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcC Q lcl|Aclame:pro 152 AFHHRPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYG 231 (526) Q Consensus 152 ~l~~r~~~~f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G 231 (526) .+ ...+..+.+...|+|+..-..+. +.+.+..+.- .-..+ -+.| T Consensus 124 --~~---------------------~~~~~~~~~~dvih~~~~~~~~~--~~~~~~~a~~----------~~~~~-~~~~ 167 (378) T protein:vir:85 124 --LF---------------------ANDKKEYKPEELVRLVSPFYINE--DTSILDNALA----------SIQTK-LEQG 167 (378) T ss_pred --Ee---------------------cCCCEEEcccceEEEecCcCccc--hhhHHHHHHH----------HHHHH-HhcC Confidence 11 11223344555565553221111 1233332221 11112 2456 Q ss_pred CceEEEecCCCCCHHHHHHHHHHHH----Hhh----cCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhch Q lcl|Aclame:pro 232 LPIRLGKYPPGTADEEKATLLRAVT----GLG----HAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGG 303 (526) Q Consensus 232 ~P~~vgk~~~~~~~~e~~~l~~al~----~~~----~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGq 303 (526) .|--+.+++...+++..+.+.+.++ +.. +...++++.|++++-++.+.... .++ ..++..++|++++..+ T Consensus 168 ~~~g~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~-~~~-~~~~~~~~Ia~~fgVP 245 (378) T protein:vir:85 168 KLRGLLKINAFLDIDNTQEYREKALATIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVL-NKD-EIELIKSELLTGYFMN 245 (378) T ss_pred CcceEEEeCCcCCHHHHHHHHHHHHHHHHHhhcccccccceecCCCceEEeccCChhhh-hHH-HHHHHHHHHHHHhCCC Confidence 7767778877666665544444433 321 22467888998887776433222 243 4678889999998776 Q ss_pred hhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCCCCCcccceeEEecCccccCHHHH Q lcl|Aclame:pro 304 TLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPL---LVLNRPGSPDVRRAPRLVFDLREQADITSM 380 (526) Q Consensus 304 tltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l---~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~ 380 (526) .--.. ||++. +........-+.-.++.|+..||+.|+.+- ..+.+... ....|..+.....|++++ T Consensus 246 p~~l~------~s~~e-~~~~~f~~~tL~P~~~~ie~~l~~kLl~~~er~~~~~~~~~----~~~~f~~~~l~~~d~~~~ 314 (378) T protein:vir:85 246 ENILL------GTATQ-EQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYY----ERIIVDNQLFKFATLKEL 314 (378) T ss_pred HHHhc------CCchH-HHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhcccc----ceeeecchhhhhcCHHHH Confidence 42221 33332 222334556677888888899988887532 11111100 012344445556799999 Q ss_pred HHHHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 381 AQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQ 447 (526) Q Consensus 381 a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (526) ++.+.++++.|+ ++.+++|+++|+|+-+.++....+....+.... ...... ............+ T Consensus 315 ~~~~~~~~~~G~-~T~NE~R~~lgl~p~~gGD~~~~~~N~~~~~~~-~~~~~~-~~~~~~~~e~~n~ 378 (378) T protein:vir:85 315 IDLYHENINGPI-FTQNQLLVKMGEQPIEGGDIYIANLNAVAVKNL-SDLQGS-RKDVASTDETNNQ 378 (378) T ss_pred HHHHHHHHhCCC-cCHHHHHHHhCCCCCCCCCeEeecccccccccc-hhhcCc-cCCCCCCCCCCCC Confidence 999999999998 999999999999988777765443222111111 110000 0111111111111 No 104 >protein:vir:5249 Length: 437 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852754;genbank:gi:31544029;interpro:IPR006445;uniprot:Q7Y5U6;genbank:GeneID:2753529 Probab=99.41 E-value=2.7e-11 Score=78.55 Aligned_cols=397 Identities=11% Similarity=-0.009 Sum_probs=205.3 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |. ..|-+=++ +.|+...+ ....-...-+....+..|+ .+..+.+-++.++++ T Consensus 1 ~~-~~D~~~~~-------------------------~~~~g~~~-~~~~~~~~~~~~~~~~~l~-a~Y~~~~l~~~~vd~ 52 (437) T protein:vir:52 1 MK-FFDGIKSL-------------------------ALKLGSKQ-EQTYYSPSLSLTDDLVQLE-ALWRDNWIANKVCIK 52 (437) T ss_pred Cc-hhhhhHhH-------------------------HhcCCCcc-ccceeecCccccccHHHHH-HHHHhCchhhHHhhc Confidence 11 11111111 11111110 0000011111122233333 334579999999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecCC--------eeEEee Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGR--------EWMPLA 152 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g--------~~~~~~ 152 (526) .-.-.++..|.|.- ++.++ +..+.+++.++++.-+..+...+..+-+||-+++=++= ++. .-.++. T Consensus 53 ~a~d~~r~~~~i~~-~d~~~---~~~~~~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~~--d~~~~~~pl~~~~~~~~ 126 (437) T protein:vir:52 53 RPEDMVRNWREIYS-NDLNS---KQLDLFTKFERSLKLRETLTKALQWSSLYGSVGLLVVT--DSQNTSAPLKPTERLKR 126 (437) T ss_pred chHHhhcCCceEec-CCCCH---HHHHHHHHHHHhhcHHHHHHHHHHhcccccceEEEEEe--cCCCcccccccCCceeE Confidence 88888888888863 22211 23344566666664345555555569999977665542 221 123455 Q ss_pred eeeecCceeEecccC---------Cce-EEeccCCCCceeecCCCeEEEeec---CCCCccccchhHHHHHHHHHHHHHH Q lcl|Aclame:pro 153 FHHRPQSWFQLNPED---------QNE-LRLRDNSPAGEALQPFGWIIHRPR---ARSGYVARSGLFRVLAWPYLFRHYA 219 (526) Q Consensus 153 l~~r~~~~f~~~~~~---------~~~-l~~~~~~~~g~~lp~~k~i~~~~~---~~~g~p~g~gLl~~~~~~~~fK~~~ 219 (526) |...++.++...... +.. .....++.....+++.+.+++... ....+.+|.|++..+|....--... T Consensus 127 ~~v~~~~~v~~~~~~~~dp~s~~fg~p~~y~v~~~~~~~~iH~SRii~~~~~~~~~~~~~~~G~s~le~~~~~i~~~~~~ 206 (437) T protein:vir:52 127 LIILPKWKISPTGTKDDDVLSPNFGRYSEYSILGGSQSITVHHSRLIILNANDAPLSDNDIWGVSDLEKIIDVLKRFDSA 206 (437) T ss_pred EEEechhhccccccccccccccccCcceEEEEecCCcceeEccceeEEecCccCCCccccccCCchHHHHHHHHHHHHHH Confidence 666666655422111 011 111122333456888887776532 2446678999999999887666666 Q ss_pred HHHHHHHHHHcCCceEEEecCC------CCCHHHHHHHHHHHHHhhc-CeEEEecCCceEEEeecCCCChHHHHHHHHHH Q lcl|Aclame:pro 220 TSDLAEMLEIYGLPIRLGKYPP------GTADEEKATLLRAVTGLGH-AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQS 292 (526) Q Consensus 220 ~~~w~~f~E~~G~P~~vgk~~~------~~~~~e~~~l~~al~~~~~-~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~ 292 (526) ..-=+..+.++.+++ .|++. ...++...+..+.+..+.+ .+.+++..+.+++.++.+=++ -..+++.. T Consensus 207 ~~~~~~l~~~~~~~v--~k~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~sg---l~~~l~~~ 281 (437) T protein:vir:52 207 SVNVGDLIFESKIDI--FKIAGLSDKIAAGMENEVASVISAVQEIKSATNSLLLDAENEYDRKELTFTG---LKDLLTEF 281 (437) T ss_pred HHHHHHHHHHcCCCc--eecchHHHHhcCCcHHHHHHHHHHHHHhcCCCceEEEcCCcceEEEecCcCC---HHHHHHHH Confidence 666667777877663 44431 1123344445555555544 578888999999998765233 34466666 Q ss_pred HHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCc Q lcl|Aclame:pro 293 EDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLR 372 (526) Q Consensus 293 d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~ 372 (526) -.+||.+.--+ +|.-.+...+| .|.|+-......+.+++.......-+.+.|++.|+.--|++.. ++ -+|+|..- T Consensus 282 ~~~iaaa~~iP-~t~L~G~s~~G-lasge~D~~~yyd~i~~~Qe~~l~p~le~l~~~i~~~~~g~~~-~~--~~~~f~pL 356 (437) T protein:vir:52 282 RNAVAGAADMP-VTILFGQSVSG-LASGDEDIQNYHEAIRRLQETRLRPIFEIIDPLICNELFGGLP-AD--WWFEFVPL 356 (437) T ss_pred HHHHHHHhcCc-hhhhcCcCccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc--ceEEeCCc Confidence 77888775433 22222222222 3556767777888898888664444445688878777776432 22 24555433 Q ss_pred cccC-------HHHHHHHHHHHHhCCCcCCHHHHHHHhC----CCCCCccc-hhcccCCCcccccccccccccccccccc Q lcl|Aclame:pro 373 EQAD-------ITSMAQSIPALVNVGLEIPSAWVYDKLG----IPQPAKNE-PVLRSAAQPAILSRQHGQRVAALATIVG 440 (526) Q Consensus 373 e~ed-------l~~~a~~~~~l~~~G~~v~~~~~~e~~G----lp~~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (526) ...+ .+..+++++++++.|+ ++++++++++. ++.-.+++ +......++......+.... +.. T Consensus 357 ~~~s~kekae~~~~~a~a~~~~~~~g~-i~~~e~r~~L~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~- 430 (437) T protein:vir:52 357 TTVKQEQQINMLNTFATAANTLIQNGV-LNEYQIANELRESGLFANISAEHIEELKNADEFAGNFEEPEKME----GAQ- 430 (437) T ss_pred CCcCHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHhcCCCCCCCccccccccCCCCCCCccCCCCCCC----CCC- Confidence 3333 2456777888999997 88888888862 11111111 00000000000000000000 011 Q ss_pred ccccccc Q lcl|Aclame:pro 441 PRYGDQQ 447 (526) Q Consensus 441 ~~~~~~~ 447 (526) +..+..+ T Consensus 431 ~~~~~~~ 437 (437) T protein:vir:52 431 VQNSEDQ 437 (437) T ss_pred CCCCCCC Confidence 1111111 No 105 >protein:vir:94869 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762515;genbank:gi:115304214;genbank:GeneID:5141182 Probab=99.34 E-value=2.1e-11 Score=79.13 Aligned_cols=360 Identities=8% Similarity=-0.037 Sum_probs=177.1 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+ |.+ +.+.+..... ..+..+.+ ... +.+ ...+-+.|.+|+.. T Consensus 1 M~-if~---~~~~~~~~~~-----~~~~~~~~-----------------~~~-~~~----------~~~~~~~v~~~v~~ 43 (378) T protein:vir:94 1 MN-LFG---KVVSFSRGKL-----NNDTQRVT-----------------AWQ-NEA----------VEYTSAFVTNIHNK 43 (378) T ss_pred Cc-hhH---HhHhhhhccc-----ccCcceee-----------------eee-cch----------hhhhhHHHHHHHHH Confidence 55 222 2111110000 00000000 000 000 11123578999999 Q ss_pred HHHHHhcCCceEecCCCCCH----HHHHHHHHHHHHHhcCc----CHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEe Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASA----AEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPL 151 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~----~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~ 151 (526) +...|.++++.+.-....+. .......-+..+|+..| ...++...++ +.+++|.+.+-.+|...+|.+.. T Consensus 44 Ia~~iA~lp~~~~~~~~~~~~~~~~~~~~~~~l~~lLn~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~- 122 (378) T protein:vir:94 44 IANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSSKGERNSMEFWQKVIKKLLTTRYIDLYPIFDSETGELLD- 122 (378) T ss_pred HHHhHhhCceeeeeecccccccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCCcEEE- Confidence 99999999997643221110 00111122344454333 2335555444 56779998877677655554321 Q ss_pred eeeeecCceeEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcC Q lcl|Aclame:pro 152 AFHHRPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYG 231 (526) Q Consensus 152 ~l~~r~~~~f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G 231 (526) +.+. ..+..+++...++.+ ...+.+. +.+++..+.-.. ..+. +.| T Consensus 123 -~~~~---------------------~~~~~~~~~dvih~~-~~~~~~~-~~~~~~~~~~~~----------~~~~-~~~ 167 (378) T protein:vir:94 123 -LLFA---------------------NDKKEYKPEELVRLT-SPFYINE-DTSILDNALASI----------QTKL-EQG 167 (378) T ss_pred -EEEe---------------------cCcEEechhceeeec-CcCCccc-chhHHHHHHHHH----------HHHH-hhC Confidence 1111 112335555544433 2222222 345555543211 1112 234 Q ss_pred CceEEEecCCCCCHHHHHH----HHHHHHHhh--cC--eEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhch Q lcl|Aclame:pro 232 LPIRLGKYPPGTADEEKAT----LLRAVTGLG--HA--AAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGG 303 (526) Q Consensus 232 ~P~~vgk~~~~~~~~e~~~----l~~al~~~~--~~--~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGq 303 (526) .|--+.+++...+++..+. +.+.+.+.. .+ ..++++.|++++-++.+.... .. ...++..++|++++..+ T Consensus 168 ~~~g~l~~~~~l~~~~~~~~~e~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~~~-~~-~~~~~~~~~Ia~~fgvP 245 (378) T protein:vir:94 168 KLRGLLKINAFLDIDNTQEYREKALATIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVL-NK-DEIDLIKSELLTGYFMN 245 (378) T ss_pred CcccceeeCCcCCHHHHHHHHHHHHHHHHHhhcccccccceeccCCceEEEccCChHHh-hH-HHHHHHHHHHHHHhCCC Confidence 5545667776666554433 444444332 22 468888888887665433222 34 34578889999998775 Q ss_pred hhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCcccceeEEecCccccCHHHHHH Q lcl|Aclame:pro 304 TLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVL-NRPGSPDVRRAPRLVFDLREQADITSMAQ 382 (526) Q Consensus 304 tltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~-Nf~~~~~~~~~p~~~~~~~e~edl~~~a~ 382 (526) .--.. |+++- +........-+.-.++.|+..||+.|+..--.. .++.. ......|.++.....|.+.+++ T Consensus 246 p~~l~------g~~~e-~~~~~f~~~tl~P~~~~ie~~l~~~Ll~~~e~~~g~~~~--~~~~~~f~~~~l~~~d~~~~~e 316 (378) T protein:vir:94 246 ENILL------GTATQ-EQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNL--YYERIIVDNQLFKFATLKELID 316 (378) T ss_pred HHHhc------CCchH-HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhhhhhhhc--ccceeEeecchhhhcCHHHHHH Confidence 32221 22221 111223345677888899999998887542211 11110 0111334555566779999999 Q ss_pred HHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 383 SIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQ 447 (526) Q Consensus 383 ~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (526) ++.++++.|+ ++.+++|+++|+|+-+.++....+....+ ............ ..........+ T Consensus 317 ~~~~~~~~G~-~t~NE~R~~~g~~p~~ggd~~~~~~n~~~-~~~~~~~~~~~~-~~~~~~e~~n~ 378 (378) T protein:vir:94 317 LYHENINGPI-FTQNQLLVKMGEQPIEGGDVYIANLNAVA-VKNLSDLQGNRK-DVTSTDETNNQ 378 (378) T ss_pred HHHHHHhCCC-cCHHHHHHHhCCCCCCCCCeeeecccccc-hhcchhcccccC-CCCCCCCCCCC Confidence 9999999997 99999999999988777776554422211 111111011100 00111111111 No 106 >protein:vir:389 Length: 530 # NCBI annotation: gp4 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046899;genbank:gi:9630468;genbank:GeneID:1261643 Probab=99.30 E-value=1.5e-10 Score=74.46 Aligned_cols=434 Identities=10% Similarity=0.051 Sum_probs=210.4 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+.++++.+++.......--..+ ++..+.+..|.....++... + ..+......-.+++...++++.++++. T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~a--~~~~~~~~~w~~~~~s~~~~--i-----~~~~~~lr~RaRdl~rNn~~a~~av~~ 73 (530) T protein:vir:38 3 IPSLVGPDGKTSLREYAGYHGGG--GGFGGQLRGWNPPSESADAA--L-----LPNYSRGNARADDLVRNNGYAANAVQL 73 (530) T ss_pred cceeecCccccchHHHhhhhccc--CCCCCcccccccCCCCHHHH--H-----HHHHHHHHHHHHHHHhcChHHHHHHHH Confidence 88999998887633222111111 11222333332223333321 1 123444555667778899999999999 Q ss_pred HHHHHhcCCceEecCCC------CCHHHHHHHHHHHHHHhc-------------CcCHHHHHHHHHH-hhhhcceeeeEE Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRN------ASAAEKADADYLHELLLD-------------LEGLEDLLLDALD-GIGHGYSCIELE 140 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~------~~~~~~~~a~~v~~~l~~-------------~~~~~~~i~~~ld-a~~~G~s~~Ei~ 140 (526) ....|.+..+.+.+.-+ +...+++..+.|+..+.. .-+|..+...++. .+--|=.++-+. T Consensus 74 ~~~nvVG~Gi~~~~~p~~~~l~~~~~~~~~~~~~ie~~w~~W~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~~~ 153 (530) T protein:vir:38 74 HQDHIVGSFFRLSYRPSWRYLGINEEDSRAFSRDVEAAWNEYAEDDFCGIDAERKRTFTMMIREGVAMHAFNGELCVQAT 153 (530) T ss_pred HHHHhhCCCceeeeccchhhcCCCHhHHHHHHHHHHHHHHHhhcCCCcEEeeeccCCHHHHHHHHHHHHhhCCceEEEee Confidence 99999999888776421 223344555555555431 1146677766664 466888888888 Q ss_pred EeecCCeeEEeeeeeecCceeE----------------ecccCCce--EEeccC-C----CCceeecCC-----CeEEEe Q lcl|Aclame:pro 141 WALQGREWMPLAFHHRPQSWFQ----------------LNPEDQNE--LRLRDN-S----PAGEALQPF-----GWIIHR 192 (526) Q Consensus 141 w~~~~g~~~~~~l~~r~~~~f~----------------~~~~~~~~--l~~~~~-~----~~g~~lp~~-----k~i~~~ 192 (526) |..++|...+-+|..+++.++. ||..++.. ...... . .....+|.+ .-|+|. T Consensus 154 ~~~~~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v~a~~vlH~ 233 (530) T protein:vir:38 154 WDSDSTRLFRTQFKMVSPKRVSNPNNIGDTRNCRAGVKINDSGAALGYYVSDDGYPGWMAQNWTYIPRELPGGRPSFIHV 233 (530) T ss_pred eccCCCCccceEEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEEeeccCCCccccccceeeeeeccChhHeEee Confidence 9877766555566666554332 22222111 011111 0 111112222 247777 Q ss_pred ecCC-CCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCC----------C-HHHHH----------- Q lcl|Aclame:pro 193 PRAR-SGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGT----------A-DEEKA----------- 249 (526) Q Consensus 193 ~~~~-~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~----------~-~~e~~----------- 249 (526) +... .+..-|.+.|..+.....-........+.-...-.+=..+.|.+.+. . +++.. T Consensus 234 f~~~r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (530) T protein:vir:38 234 FEPMEDGQTRGANAFYSVMEQMKMLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFILGADNKEQQSKLTGWLGEMAA 313 (530) T ss_pred ccccCCCcccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeeccCCccccccccccCCcccccccccccchhhhh Confidence 7654 68888999988776554433332222222222211111122211100 0 00000 Q ss_pred HHHHHHHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHH Q lcl|Aclame:pro 250 TLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHD 329 (526) Q Consensus 250 ~l~~al~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~ 329 (526) .-......+.......++.|.+|+|.+.+.. +..|..|.+.+-+.|+..+ |-+-..-+++-.+.||+.+-.-..-+.. T Consensus 314 ~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p-~~~~~~f~~~~lr~iaagl-Gi~ye~lt~D~s~~nYSS~R~~~~e~~r 391 (530) T protein:vir:38 314 YYSAAPVRLGGARVPHLLPGDSLNLQSAQDT-DNGYSTFEQSLLRYIAAGL-GVSYEQLSRNYSQMSYSTARASANESWA 391 (530) T ss_pred cccccceeccCceeeecCCCCeeeeeCCCCC-CCCHHHHHHHHHHHHHhhc-CCCHHHHhcccccccHHHHHHHHHHHHH Confidence 0111122467778888999999999986543 3458999999999999996 4442222233233566655555544555 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hcC----CCCCC------cccce--eEEecCccccCHHHHHHHHHHHHhCCCcC Q lcl|Aclame:pro 330 LLASDARQLAATLSRDLLWPLLV---LNR----PGSPD------VRRAP--RLVFDLREQADITSMAQSIPALVNVGLEI 394 (526) Q Consensus 330 ~~~ad~~~i~~~ln~~li~~l~~---~Nf----~~~~~------~~~~p--~~~~~~~e~edl~~~a~~~~~l~~~G~~v 394 (526) .++.....+...+-+-+...+++ ++. +...+ ...+. .+.-......|..+-+++....+++|+. T Consensus 392 ~~~~~q~~~~~~~~~pi~~~wl~~av~~G~i~~p~~~~~~~~~~~~a~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~- 470 (530) T protein:vir:38 392 YFMGRRKFVASRQACQMFLCWLEEAIVRRVVTLPSKARFSFQEARTAWGNANWIGSGRMAIDGLKEVQEAVMLIEAGLS- 470 (530) T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCccCCCCCCCCchhhHHhhhceeeecCCccccChHHHHHHHHHHHHcCCC- Confidence 56566665555444444444332 121 11000 00111 2333344456888888888999999983 Q ss_pred CHHHHHHHhCCCCCCccchhcc------c--CCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 395 PSAWVYDKLGIPQPAKNEPVLR------S--AAQPAILSRQHGQRVAALATIVGPRYGDQQ 447 (526) Q Consensus 395 ~~~~~~e~~Glp~~~~~e~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (526) |.+.+..+.|..+.+-.+++.. . -..+..+........ ...+...+...... T Consensus 471 s~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~-~~~~~~~~d~~~~a 530 (530) T protein:vir:38 471 TYEKECAKRGDDYQEIFAQQVRESMERRAAGLNPPAWAAAAFEAGV-KKSNEEEQDGARAA 530 (530) T ss_pred CHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCC-CCCCCCCCCCCCCC Confidence 3333333345433211111000 0 000000000000000 00000000000000 No 107 >protein:vir:94049 Length: 532 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453629;genbank:gi:84662665;genbank:GeneID:5142559 Probab=99.25 E-value=3.2e-10 Score=72.67 Aligned_cols=448 Identities=11% Similarity=0.024 Sum_probs=210.5 Q ss_pred CCeeecCCCCc-cCccccchhh-------hhhhhhhhhhhhhhhhcccCHH---HHHHHHH---ccc----------CCC Q lcl|Aclame:pro 1 MAQIVDVYGNP-IRTQQLREPQ-------TSRLAGLAKEFAQHPAKGLTPA---KLARILV---EAE----------QGN 56 (526) Q Consensus 1 m~~~~~~~g~p-~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~---~~~~~l~---~a~----------~g~ 56 (526) |+. .|+.-|| |....|.+.+ +...-+..|.+.-.+ .++.|. .+...+- ..+ -+. T Consensus 1 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~ 78 (532) T protein:vir:94 1 MAD-TDPTPRPEITYATLQQAQRVDAKRATHTSLGLATAHEIDP-TAYSPYERNAAQNAMAMDYGLQTGRNGRNALSFVE 78 (532) T ss_pred CCC-CCCCCCcceehhhhhhHhhhhhhhhhhhhhhhhhhhhhcc-cccccccccccccccccccccCccccccccccccc Confidence 663 4555555 3222222111 111111122111111 011110 0000000 000 011 Q ss_pred --HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcc Q lcl|Aclame:pro 57 --LQAQAELFMDMEERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGY 134 (526) Q Consensus 57 --~~~~~~l~~~m~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~ 134 (526) ....+.++ .+..+.+-++.++++.-.-+++..|+|.-.+++ ..+......++..++++.-++.+...+-.+.+||. T Consensus 79 ~~~~~~~~l~-a~Y~~~~l~r~~Vd~~aed~~r~~~~i~~~~~~-~~~~~~~~~i~~~~~~l~v~~~l~~a~~~~rlyG~ 156 (532) T protein:vir:94 79 ATSWPGFPTL-ALLAQLPEYRTMHETPADECVRAWGKITCSSKD-ELAADKATRITQKLEQYNVRTLVRTVVIHDQAYGG 156 (532) T ss_pred ccccchHHHH-HHHHcCchhhhhhccchHHHhhCCceEeeCCcc-ccchHHHHHHHHHHHhhhHHHHHHHHHHhhhcccc Confidence 01122333 344579999999999999999999999754432 22234455566666665434555555557889998 Q ss_pred eeeeEEEeecCC----------------eeEEeeeeeecCceeEecccCC-ceE--------EeccCCCCceeecCCCeE Q lcl|Aclame:pro 135 SCIELEWALQGR----------------EWMPLAFHHRPQSWFQLNPEDQ-NEL--------RLRDNSPAGEALQPFGWI 189 (526) Q Consensus 135 s~~Ei~w~~~~g----------------~~~~~~l~~r~~~~f~~~~~~~-~~l--------~~~~~~~~g~~lp~~k~i 189 (526) +++=+.=.-++. .-.++.|...++.|......+. ..+ .+. -..|..+.+.++| T Consensus 157 a~i~i~v~~~~~~~~~~~p~~l~~~~I~~g~~~~l~vld~~~v~p~~~~~~dp~sp~fg~P~~y~--v~~g~~iH~SRli 234 (532) T protein:vir:94 157 AHVFPHLKMDGDSVPADAPLLLSPSFVQRGCLIGFATIEPMWLSPNAYNATDPTLPSFYKPDSWI--ATSGKKIHSSRIH 234 (532) T ss_pred eEEEEEeccCCccccccccccccccccccceeeEEEeechheecccccccccccccccCCceeEE--EccCeeeccceEE Confidence 875443211111 1123456666676655432111 100 000 0124567777777 Q ss_pred EEeecC------CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCC--CCCHHHHHHHHH---HHHHh Q lcl|Aclame:pro 190 IHRPRA------RSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPP--GTADEEKATLLR---AVTGL 258 (526) Q Consensus 190 ~~~~~~------~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~--~~~~~e~~~l~~---al~~~ 258 (526) ++.... ...+.+|.+++..+|....--.....--+..+.++.+.+. |++- -.+.+..+.+.+ .+... T Consensus 235 ~f~g~~~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l~~~~~~~v~--k~~~a~~ls~~~~~~~~~r~~~~~~~ 312 (532) T protein:vir:94 235 TVVGRPVGDMLKAAYSFRGVSISQLAMPYVDNWLRTRQSVSDTVKQFSMTNL--ATDMAQLLAPGGAQSLDARLQLFNLY 312 (532) T ss_pred EecCCCchhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCcee--eechHHhhcchhHHHHHHHHHHHHhh Confidence 665332 2234479999999987776555555555667888886643 4431 112223333333 33333 Q ss_pred h-cCeEEEecC-CceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 259 G-HAAAGIIPE-TMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDAR 336 (526) Q Consensus 259 ~-~~~~~iip~-~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~ 336 (526) . ..+..+++. +.+++.+..+=++ .+.+++..-++||-+. |-.+|.--+...+|-.|.|+.-.....+.+++-.. T Consensus 313 ~~n~g~~~id~~~e~~e~~~~~lsg---l~~~l~~~~~~iAaa~-~IP~t~LfG~sp~GlnstGe~D~~~yyd~I~s~Qe 388 (532) T protein:vir:94 313 RDNRNIGALDKGTEEIQQTNTPLSG---LDSLQAQSQEQMAAVS-HIPLVKLLGITPNGLNASSDGEIRVWYDFIAGYQA 388 (532) T ss_pred cCCccceEEcCCCceeEEEecccCC---HHHHHHHHHHHHHhHh-CCCeeeeecCCcccccccchHHHHHHHHHHHHHHH Confidence 3 346677776 4778888754222 3556777777888664 44444222333345556667677778888988876 Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHH-------HHHHHHHHHHhCCCcCCHHHHHHHhCCCCCC Q lcl|Aclame:pro 337 QLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADIT-------SMAQSIPALVNVGLEIPSAWVYDKLGIPQPA 409 (526) Q Consensus 337 ~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~-------~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~ 409 (526) ....-+.+.|+..|+..-|+.. +++ -+|+|..-...+-+ ..+++++++++.|+ ++.+++|+.++..+.. T Consensus 389 ~~l~p~le~l~~~l~~s~~g~~-~~d--~~~~f~pL~~~s~kEkAei~~~~a~a~~~~~~~Gv-i~~~Evr~~l~~~~~~ 464 (532) T protein:vir:94 389 TNLTPLMEWIIDLIQLSEYGQI-DPG--LAWEWSPLMELDDKELAEVRQLNASTDSTLMELGV-IDAKMVQQRLAADPTS 464 (532) T ss_pred HHHHHHHHHHHHHHHHHhcCCC-CCC--ceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHhcCCcc Confidence 6544444567777766555533 222 24556543333333 45667788888887 9999999999864321 Q ss_pred ccchhc-------ccCCC-----cc-cccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 410 KNEPVL-------RSAAQ-----PA-ILSRQHGQRVAALATIVGPRYGDQQALDKALADLPAKDMQNQANDLLAP 471 (526) Q Consensus 410 ~~e~~~-------~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (526) ...... ..... .. ..+...+.................+..- .. +..+.-.++-+. T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~---~~~~~~~~~~~~ 532 (532) T protein:vir:94 465 GYAGALGERDELDDVEEIAKQLMAAALNPPATAPQTPNPQPDSEDDQTDNQPDA----QA---DPAQNDQPVGNR 532 (532) T ss_pred ccccccccccccccccchhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCccCC----Cc---cccccCCCcCCC Confidence 111000 00000 00 0000000000000000000000000000 00 000000000000 No 108 >protein:vir:5691 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839850;genbank:gi:30065705;genbank:GeneID:1260599 Probab=99.22 E-value=9.3e-11 Score=75.59 Aligned_cols=324 Identities=10% Similarity=0.018 Sum_probs=178.0 Q ss_pred CCeeecCCCCccCccccchhhhhhhh--hhhhhhh-hhhhcccCHHHHHHHHHcccCCC-------HHHHHHHHHHHHhc Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLA--GLAKEFA-QHPAKGLTPAKLARILVEAEQGN-------LQAQAELFMDMEER 70 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~l~~~~~~~~l~~a~~g~-------~~~~~~l~~~m~~~ 70 (526) |+|-.- +...+.+....+ +....+. +.|..-++...+-+-+.-...|+ +..+.++ .+. T Consensus 1 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~----~~a 68 (344) T protein:vir:56 1 MSKKKG--------KTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKS----LRA 68 (344) T ss_pred CCCCCC--------CCCchhhHHhhcCCCceEEEEcCCceeecCcchhhhHHHhhhcCccccCCCCHHHHHHH----Hhh Confidence 886211 111111111111 1111121 12222233333344444444554 2233333 346 Q ss_pred cHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecCCeeEE Q lcl|Aclame:pro 71 DAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMP 150 (526) Q Consensus 71 D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~~~ 150 (526) .+|..|+|..++.-+.+. +.|+..-+.. .|..++ ++-+.+|.+.+|++++..| .+ T Consensus 69 ~~~h~s~i~~k~n~l~~~---~~Pnp~~t~~----------------~f~~~~---~d~ll~Gnay~~~~rn~~G---~~ 123 (344) T protein:vir:56 69 AVHHSSPIYVKRNILAST---FIPHPWLSQQ----------------DFSRFV---LDFLVFGNAFLEKRYSTTG---KV 123 (344) T ss_pred hhhhCccceehhhhHHhh---cCCCCCCCHH----------------HHHHHH---HHHHhcCCeEEEEEECCCC---cE Confidence 888888888877766652 4554432211 133333 3556789999999876544 45 Q ss_pred eeeeeecCceeEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHc Q lcl|Aclame:pro 151 LAFHHRPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIY 230 (526) Q Consensus 151 ~~l~~r~~~~f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~ 230 (526) ..|.+.++.+.+...+++.... ....+....+++...++.+.....+..||.+.+..+......-.....+-..|.+.- T Consensus 124 ~~L~pl~~~~v~~~~~~~~~~~-~~~~g~~~~~~~~dIiHir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NG 202 (344) T protein:vir:56 124 IRLETSPAKYTRRGVEEDVYWW-VPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENG 202 (344) T ss_pred EEEEEeCCceeEEeecCCEEEE-EecCCeEEEEcCccEEEECCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 6899999988887766654333 333344456777775544443435667999999999888888888888888888888 Q ss_pred CCceEEEecC-CCCCHHHHHHHHHHHHHhhc-C--eEEEe--cCCc--eEEEeecCC-CChHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 231 GLPIRLGKYP-PGTADEEKATLLRAVTGLGH-A--AAGII--PETM--AIDFQQAAQ-GSSEPFLAMMRQSEDAISKAVL 301 (526) Q Consensus 231 G~P~~vgk~~-~~~~~~e~~~l~~al~~~~~-~--~~~ii--p~~~--~ie~~~a~~-~~~~~~~~li~~~d~~Isk~il 301 (526) ++|--|.+++ +..++++++++.+++++... + ..+++ |.|. .++++..+. ..-..|.+.-++-..+|+.+.. T Consensus 203 a~pg~Il~~~d~~ls~e~~~~lk~~~~~~~g~~~~r~l~l~~p~g~~~G~~~~pis~~~~d~qf~e~k~~s~~eIa~afr 282 (344) T protein:vir:56 203 AHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHR 282 (344) T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHHhcCCCCccceEEecCCCCccceeEEEcCCChHHHHHHHHHHhhHHHHHHHhC Confidence 8898887764 46788999999988887532 2 22333 4322 345554432 2334588888899999999987 Q ss_pred chhhhcccccccchhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCH Q lcl|Aclame:pro 302 GGTLTSTTSQSGGGAFALGQVHNEV-RHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADI 377 (526) Q Consensus 302 Gqtltt~~~~~~~gS~a~~~vh~~v-~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl 377 (526) .+.--.+..++++|+++-.+-...+ ...-+.--++.+++ +|..|...++.++ --..+.+|- T Consensus 283 VPp~llGi~~~~t~~~~n~eq~~~~f~~~tL~Pl~~~ie~-~n~~l~~~~~~F~--------------~y~l~~~~~ 344 (344) T protein:vir:56 283 IPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFK--------------NYSLDTDNG 344 (344) T ss_pred CCHHHhccCCCCCCccccHHHHHHHHHHHHHHHHHHHHHH-HHhhhccccccCC--------------CccccccCC Confidence 6654443333334445433333333 22333344445543 4443332222211 111111121 No 109 >protein:vir:79538 Length: 502 # NCBI annotation: putative portal protein # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272517;genbank:gi:148609386;genbank:GeneID:5204374 Probab=99.22 E-value=3.2e-10 Score=72.67 Aligned_cols=432 Identities=10% Similarity=-0.026 Sum_probs=212.0 Q ss_pred CCeeecCCCCccCccccchhhhhh--h-----hhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSR--L-----AGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAH 73 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~ 73 (526) |+ ++|....+|.++..-+-..+. + ++..+....++. ..++.. .+ ..+......-.+++...+++ T Consensus 1 mn-~~dr~i~~~sP~~~~~R~~ar~~~~~y~aa~~~r~~~~~~~-~~s~~~--~~-----~~~~~~lr~RaRdl~rNn~~ 71 (502) T protein:vir:79 1 MA-ILDDVIGVFSPGWKAARLRSRAVIQAYEAVKTTRTHKARRE-NRTADQ--LS-----QYGAVSLREQARYLDNNHDL 71 (502) T ss_pred Cc-hHhhHHhhcChHHHHHHHhhHHHHhhccccCcccccCCCCC-CCChHH--HH-----HHHHHHHHHHHHHHHhcChH Confidence 98 899988888754422111111 0 111111122221 112211 11 12344455566677889999 Q ss_pred HHHHHHHHHHHHhcC-CceEecCCC--CCHHHHHHHHHHHHHHhc---------CcCHHHHHHHHHH-hhhhcceeeeEE Q lcl|Aclame:pro 74 LFAEMSKRKRAILGL-DWAVEPPRN--ASAAEKADADYLHELLLD---------LEGLEDLLLDALD-GIGHGYSCIELE 140 (526) Q Consensus 74 v~s~l~~Rk~av~~~-~w~v~~~~~--~~~~~~~~a~~v~~~l~~---------~~~~~~~i~~~ld-a~~~G~s~~Ei~ 140 (526) +.+++.+....|.+. -+.+.|.-. +...+++.++.|+..++. .-+|..+...++. .+--|=.++-++ T Consensus 72 a~~av~~~~~nvVG~ggi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~~~ 151 (502) T protein:vir:79 72 VIGVFDKLEERVVGKNGIIVEPHPVLRNGAIARDLAAEIRTRWSEWSVSPEVTGQFTRPMLERLMLRTWLRDGEVFAQMV 151 (502) T ss_pred HHHHHHHHHHhhccCCceeeeeccCCCChhHHHHHHHHHHHHHHHhhcCcCccccCCHHHHHHHHHHHHHhCCceEEEEe Confidence 999999999999986 566655432 212234445555544432 1247777776664 566888888888 Q ss_pred Eeec----CCeeEEeeeeeecCceeE--------------ecccCCceE--EeccCCCC-----ceeecCCCeEEEeec- Q lcl|Aclame:pro 141 WALQ----GREWMPLAFHHRPQSWFQ--------------LNPEDQNEL--RLRDNSPA-----GEALQPFGWIIHRPR- 194 (526) Q Consensus 141 w~~~----~g~~~~~~l~~r~~~~f~--------------~~~~~~~~l--~~~~~~~~-----g~~lp~~k~i~~~~~- 194 (526) |.+. .|.-.+-+|..+++.++. ||..++..- +.+....+ -..+|.. -|+|.+. T Consensus 152 ~~~~~~~~~g~~~~l~lq~iepd~l~~~~~~~~~i~~GVe~d~~Gr~~aY~i~~~hPgd~~~~~~~rvpA~-~vlH~f~~ 230 (502) T protein:vir:79 152 SGRINSLTPSAGVHFWLEALEPDFIPMTSDESNRLNQGVFVDDWGRPEKYLVYKSRPVSGRQMETKEVDAE-RMLHLKFV 230 (502) T ss_pred ecccCccCCCcccceEEEEecchhcCCCCCCCCeeEeeeEECCCCceEEEEEeecCCCCCcccceeEechh-heEEeecc Confidence 8653 344445556666654432 222222110 11111111 1234544 4666665 Q ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHH---HHHHHHHHHhhcCeEE-EecCCc Q lcl|Aclame:pro 195 ARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEK---ATLLRAVTGLGHAAAG-IIPETM 270 (526) Q Consensus 195 ~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~---~~l~~al~~~~~~~~~-iip~~~ 270 (526) ...+..-|.+.|..+.....-........+.-...-.+-..+.|.+.+...... ..-......+..++.+ .++.|. T Consensus 231 ~r~gQ~RGis~lapvl~~l~~l~~~~dael~~a~i~A~~~~fi~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~~L~pGe 310 (502) T protein:vir:79 231 RRLHQMRGTSLLSGVLIRLSALKEYEDSELTAARIAAALGMYIRKGDGQSYEPDGNGSKENERELTIQPGIIYDDLKPGE 310 (502) T ss_pred cCCccccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCcccccccCCCCCccccccccCCccccccCCCc Confidence 458888899999888766654444444444444444444444443321110000 0000111234445544 468999 Q ss_pred eEEEeecCCCChHHHHHHHHHHHHHHHHHHhch--hhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 271 AIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGG--TLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLW 348 (526) Q Consensus 271 ~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGq--tltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~ 348 (526) +|+|.+.+.. +..|..|.+..-+.|+..+.-. .||.+ -+ +||+.+-.-..-+...++....++...+-+-+.. T Consensus 311 ~i~~~~p~~p-~~~~~~f~~~~lr~iaaglGi~ye~lt~D---~s-~nySs~R~~~~e~~r~~~~~q~~~~~~~~~pi~~ 385 (502) T protein:vir:79 311 EIGMVKSDRP-NPNLETFRNGQLRAVAAGSRLSFSSTARN---YN-GTYSAQRQELVESTDGYLILQDWFIGAVTRPMYR 385 (502) T ss_pred eeeeeCCCCC-CCCHHHHHHHHHHHHHhhcCCCHHHHhcc---cc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 9999986543 3458999999999999996333 34443 22 3666554444445555556666565555444444 Q ss_pred HHHH---hc----CCCCCCcccceeEEe--cCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcc--- Q lcl|Aclame:pro 349 PLLV---LN----RPGSPDVRRAPRLVF--DLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLR--- 416 (526) Q Consensus 349 ~l~~---~N----f~~~~~~~~~p~~~~--~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~--- 416 (526) ++++ ++ .++......+....+ ......|..+-+++....++.|+ .|.+.+....|..+.+-.++... T Consensus 386 ~~l~~a~l~G~i~~p~~~~~~~~~~~~W~~p~~~~iDP~Ke~~a~~~~i~~Gl-~t~~~~~a~~G~D~~~v~~q~a~e~~ 464 (502) T protein:vir:79 386 AWLKQAVASGVIRLPRDLDRSSLYTAVYSGPVMPWIDPVKEAEAWKIQIRGGA-ATESDWVRAGGRNPDDVKRRRKAEID 464 (502) T ss_pred HHHHHHHHcCCCCCCCCCCchhhcceeeecCCccccChHHHHHHHHHHHHcCC-CCHHHHHHHcCCCHHHHHHHHHHHHH Confidence 3332 22 222212222333333 23334688888888899999998 44444444456543221111110 Q ss_pred ---cC--CCccccccccccccccc-ccccccccccccc Q lcl|Aclame:pro 417 ---SA--AQPAILSRQHGQRVAAL-ATIVGPRYGDQQA 448 (526) Q Consensus 417 ---~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 448 (526) .. +.+..+....+...... ...+.+..+..+. T Consensus 465 ~~~~~Gl~~~~~~~~~~~~~~~~~~~~e~~~~~~~~e~ 502 (502) T protein:vir:79 465 ENRKLDLVFDTDPASDKGGSSAATKRQEPQHTDDQSEE 502 (502) T ss_pred HHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Confidence 00 00000000000000000 0011111111111 No 110 >protein:vir:96068 Length: 765 # NCBI annotation: conserved hypothetical protein ORF017 # Family: family:all:297 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294434;genbank:gi:149408331;genbank:GeneID:5237187 Probab=99.18 E-value=1.8e-10 Score=73.99 Aligned_cols=507 Identities=10% Similarity=0.036 Sum_probs=203.0 Q ss_pred CCeeecCCCC-----------ccCccccchhh----hhhhhhhh------------hhhhhh------------------ Q lcl|Aclame:pro 1 MAQIVDVYGN-----------PIRTQQLREPQ----TSRLAGLA------------KEFAQH------------------ 35 (526) Q Consensus 1 m~~~~~~~g~-----------p~~~~~~~~~~----~~~~~~~~------------~~~~~~------------------ 35 (526) |=+|-=.+|| |.+++...++. .+.++..+ +....+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ds~~~~~~~ 80 (765) T protein:vir:96 1 MFKLSWIFGRKKDNAACSESAPEKVARIPQHDPLDPMIKLGKIRGWNVEPEKAPVIRSVKDFLEPGLSVAMDSAYGDGPT 80 (765) T ss_pred CceeeeecccccccccccccCchhhhhcCCCCCcccchhHHHHhhcccccccCCCCCCCCcccCcccceecccccccccc Confidence 2111111111 11111110000 00000000 000000 Q ss_pred -----hhcccCHHHHHHHHHccc-CCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH Q lcl|Aclame:pro 36 -----PAKGLTPAKLARILVEAE-QGNLQAQAELFMDMEERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYL 109 (526) Q Consensus 36 -----~~~~l~~~~~~~~l~~a~-~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v 109 (526) ...++++.+....+-.-- .+.+. .++|+ .+..+.+-++.++++.-.-.++..|.|...+++ ..+ .....+ T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-gyql~-alY~~~~l~rkiVd~pAeDa~R~g~~I~~~~~e-~~~-~~~~~l 156 (765) T protein:vir:96 81 PAAKAAAGGQNPYVVPTMLQDWYNSQGFI-GYQAC-AIISQHWLVDKACSMSGEDAARNGWELKSDGRK-LSD-EQSALI 156 (765) T ss_pred chHHHhhhccCccchhhHHHhhhcccCCc-cHHHH-HHHHhCchhhhhhhcchHHhhcCCceeecCccc-cCH-HHHHHH Confidence 011122211111111100 00111 12344 345679999999999988888888999753322 222 233456 Q ss_pred HHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEe-ecCCee------------EEeeeeeecCceeEeccc--------CC Q lcl|Aclame:pro 110 HELLLDLEGLEDLLLDALDGIGHGYSCIELEWA-LQGREW------------MPLAFHHRPQSWFQLNPE--------DQ 168 (526) Q Consensus 110 ~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~-~~~g~~------------~~~~l~~r~~~~f~~~~~--------~~ 168 (526) +..++++.-++.+...+-.+.+||-+++=+.=. .++..| .++.|...++.|...... .. T Consensus 157 ~~~~~rl~v~~~l~ea~~~~RlyGga~i~i~i~~~D~~~l~~PL~~~~I~kg~~kgl~vldp~~~~~~~v~e~~~Dp~sp 236 (765) T protein:vir:96 157 ARRDMEFRVKDNLVELNRFKNVFGVRIALFVVESDDPDYYEKPFNPDGIAPGSYKGISQIDPYWAMPQLTAESTADPSAE 236 (765) T ss_pred HHHHHHhhHHHHHHHHHHHhhhceeeEEEEEecccCcchhhccccccccccceeeEEEEechhhcccccchhcccccccc Confidence 666666543455555555799999665433221 111111 223344444444322110 00 Q ss_pred ceEEeccCCCCceeecCCCeEEEeecC------CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCC Q lcl|Aclame:pro 169 NELRLRDNSPAGEALQPFGWIIHRPRA------RSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPG 242 (526) Q Consensus 169 ~~l~~~~~~~~g~~lp~~k~i~~~~~~------~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~ 242 (526) ....-..-...+..+.+.++|++.... ...+.+|.|++..+|..+.--.....-=+.++.++.+. +.|++-. T Consensus 237 ~fg~P~~y~i~g~~IH~SRli~~~g~~lpd~lk~~~~~~G~Svlq~~yd~I~~~~~t~~~~a~Ll~k~~~~--v~k~~~~ 314 (765) T protein:vir:96 237 HFYEPDFWIISGKKYHRSHLVVVRGPQPPDILKPTYIFGGIPLTQRIYERVYAAERTANEAPLLAMSKRTS--TIHVDVE 314 (765) T ss_pred ccCcceeeeecCceeccceEEEecCCCchhhhccccCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccc--eeeechH Confidence 000000001223456666766653322 33455799999999977765555666666778888765 3344211 Q ss_pred ---CCHHHHHHHHHHHHHh-hcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhh Q lcl|Aclame:pro 243 ---TADEEKATLLRAVTGL-GHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFA 318 (526) Q Consensus 243 ---~~~~e~~~l~~al~~~-~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a 318 (526) .++++...-++.+... .+.+.+++..+.+++.++.+=++ ...+++..-++||-+. +-.+|.--+....|.+| T Consensus 315 ~~l~~~~~l~~r~~~~~~~r~n~g~~~id~ee~~e~~s~~lsg---l~d~l~~~~~~iAaas-~IP~t~LfGqsp~GlnA 390 (765) T protein:vir:96 315 KAIANEDAFNARLAFWIANRDNHGVKVIGIDETMEQFDTNLSD---FDSVIMNQYQLVAAIA-KTPATKLLGTSPKGFNA 390 (765) T ss_pred hhhccHHHHHHHHHHHHHhcCCceeEEecCCcceeEEecccCC---HHHHHHHHHHHHHhhh-CCCeeeeccCCcccccC Confidence 2233333333333333 35578899999999999864222 3456666666787775 33344333433346667 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHH-------HHHHHHHHHHhCC Q lcl|Aclame:pro 319 LGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADIT-------SMAQSIPALVNVG 391 (526) Q Consensus 319 ~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~-------~~a~~~~~l~~~G 391 (526) .|+--..++-+.+++.+.....-+.+.|+..|+..... +++ -.|+|..-...+-+ ..+++++++++.| T Consensus 391 TGe~D~~nYyD~I~s~Qe~~l~p~le~L~~li~~s~~i---~~d--~~i~FnpL~~~sekEkAei~~k~Aea~~~~~~~G 465 (765) T protein:vir:96 391 TGEHETISYHEELESIQEHIFDPLLERHYLLLAKSESI---DVQ--LEIVWNPVDSTTSQQQAELNNKKAATDEIYINSG 465 (765) T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCc--ceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcC Confidence 77777778888998888665444445677777654321 111 24555544333333 4567788899999 Q ss_pred CcCCHHHHHHHhCC------CCCCccchhcccCCCccccc---c---ccccccc--ccccc-cccccccccch---HHHH Q lcl|Aclame:pro 392 LEIPSAWVYDKLGI------PQPAKNEPVLRSAAQPAILS---R---QHGQRVA--ALATI-VGPRYGDQQAL---DKAL 453 (526) Q Consensus 392 ~~v~~~~~~e~~Gl------p~~~~~e~~~~~~~~~~~~~---~---~~~~~~~--~~~~~-~~~~~~~~~~~---~~~~ 453 (526) + ++.+++|++++- ....+++....+...+.... . ..+.... ...+. +......++.. +... T Consensus 466 v-is~dEvR~~L~~~~~~g~~~l~d~~~e~~~~~~pe~~~~~~~~~~~~~~~~~e~~~~~a~p~~~eg~~~~~~~~p~~~ 544 (765) T protein:vir:96 466 V-VSPDEVRERLRDDPRSGYNRLTDDQAETEPGMSPENLAELEKAGAQSAKAKGEAERAEAQAGAVEGAGDPVPAAPRGT 544 (765) T ss_pred C-CCHHHHHHHHhccccCCCCCCCccccccccCCCccccccccCCCcccccccCccccccCCCCccCCCCcccccCCccc Confidence 7 999999998743 21111111100111000000 0 0000000 00000 00000000000 0000 Q ss_pred HHHHHHHHHHHH-------HHH-HHHHHHHHHhcCCHHHHHHHHHH--HhhcCCHHHH-HHHHHHHHHHHHHHhHHhhhh Q lcl|Aclame:pro 454 ADLPAKDMQNQA-------NDL-LAPLLEAVNRGDSETELLGALAE--AFPDMDDSAL-TDALHRLLFAADTWGRLHGNL 522 (526) Q Consensus 454 ~~~~~~~~~~~~-------~~~-~~~i~~~~~~a~s~ee~~~~L~~--l~~~l~~~~l-~~~l~~a~~~A~l~G~~~~~~ 522 (526) .......-+.+. ++. ....++.+... .+-+.++.. ..+..+..+. +..+.+|..-++..=+-.+.. T Consensus 545 ~p~~~~~~~~~g~~~~~p~~~~p~~~~~~~~~~~---~~~~~~~~~~a~~~g~~v~~~~~~a~~~a~~ps~a~~~~~~~~ 621 (765) T protein:vir:96 545 KPLAKAAEEGAGEAATPPSRPNPRAELRNLLSDL---LSKLEALDDAQAPDGVDIEQDDAPGLKRTSKPSVSGMEPSVFS 621 (765) T ss_pred CCccccccccCccccCccccccccccchhcccch---hhhhhccccccccCCCCCCCCccchhhhhhccccCCCCCcccC Confidence 000000000000 000 00000000000 000000000 0000110000 000000000000000000000 Q ss_pred hccC Q lcl|Aclame:pro 523 DRID 526 (526) Q Consensus 523 e~~d 526 (526) +... T Consensus 622 ~~~~ 625 (765) T protein:vir:96 622 SNRI 625 (765) T ss_pred CCCC Confidence 0000 No 111 >protein:vir:98567 Length: 340 # NCBI annotation: gp1 # Family: family:all:196 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958056;genbank:gi:41057353;genbank:GeneID:2744238 Probab=99.17 E-value=2.5e-10 Score=73.26 Aligned_cols=322 Identities=10% Similarity=0.034 Sum_probs=172.2 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhh-hhhcccCHHHHHHHHHcccCCC-------HHHHHHHHHHHHhccH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQ-HPAKGLTPAKLARILVEAEQGN-------LQAQAELFMDMEERDA 72 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~l~~a~~g~-------~~~~~~l~~~m~~~D~ 72 (526) |++ -+. +|-. .+++.-++....+.. .|..-++...+-+.+.-...|+ +..+++|+ +..+ T Consensus 1 m~~--~~~-~~~~------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~la~l~----~a~~ 67 (340) T protein:vir:98 1 MSK--RKP-RKAV------AMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSL----RSAV 67 (340) T ss_pred CCC--CCC-Cccc------cccccCccceeEEEcCCceeecCcchhhhhhhhhhcCceecCCCCHHHHHHHH----Hhcc Confidence 775 111 1110 000000011111111 1211223223334444444553 33344443 4688 Q ss_pred HHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecCCeeEEee Q lcl|Aclame:pro 73 HLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPLA 152 (526) Q Consensus 73 ~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~~~~~ 152 (526) |..|+|..++.-+.+. +.|+..-+. . .|..++ ++-+.+|.+.+|++++..| .+.. T Consensus 68 ~h~s~i~~k~n~l~~~---~~Pn~~lt~-----~-----------~f~~~~---~d~ll~Gnay~~~~rn~~G---~~~~ 122 (340) T protein:vir:98 68 HHSSPIYVKRNVLAST---YIPHPLLSR-----Q-----------DFSRFA---LDYLVFGNAFLEQRHSVTG---QLIK 122 (340) T ss_pred ccchhhhhhhhHHhhc---cCCCCCCCH-----H-----------HHHHHH---HHHHhcCCeEEEEEECCCC---cEEE Confidence 9999998877776653 455433221 0 133444 3556789999999876554 3567 Q ss_pred eeeecCceeEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCC Q lcl|Aclame:pro 153 FHHRPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGL 232 (526) Q Consensus 153 l~~r~~~~f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~ 232 (526) |.+.++.+.+...+++....+.. ......+++...++.+.....+..||.+.+..+.-....-.....+-..|.+..+. T Consensus 123 L~pl~~~~vr~~~~~~~~~~~~~-~~~~~~~~~~eViHir~~~~~~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~NGa~ 201 (340) T protein:vir:98 123 LLTSPAKYTRRGVDDSVFWFVEN-FTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAH 201 (340) T ss_pred EEEeCCceEEEcccCcEEEEEec-CCeEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCC Confidence 88889888887666554443333 33345677777655554333467899999988888888777777777888888888 Q ss_pred ceEEEecC-CCCCHHHHHHHHHHHHHhhc--C--eEEE-ecCCc--eEEEeecCC-CChHHHHHHHHHHHHHHHHHHhch Q lcl|Aclame:pro 233 PIRLGKYP-PGTADEEKATLLRAVTGLGH--A--AAGI-IPETM--AIDFQQAAQ-GSSEPFLAMMRQSEDAISKAVLGG 303 (526) Q Consensus 233 P~~vgk~~-~~~~~~e~~~l~~al~~~~~--~--~~~i-ip~~~--~ie~~~a~~-~~~~~~~~li~~~d~~Isk~ilGq 303 (526) |--|..++ +..++++++++.+++++... + ..+| .|.|. .+++...+. ..-..|.+.-++-..+|+.+...+ T Consensus 202 pg~il~~~~~~ls~e~~~~lk~~~~~~~G~~n~~~~~vl~~~g~~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~a~~VP 281 (340) T protein:vir:98 202 AGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVP 281 (340) T ss_pred CceEEEecCCCCCHHHHHHHHHHHHHhcCccccCceeEecCCCCccceEEEEcCCChhHHHHHHHHHhhHHHHHHHhCCC Confidence 87777654 56788999999888887522 1 2233 34322 345554432 223458888888899999998766 Q ss_pred hhhcccccccchhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccC Q lcl|Aclame:pro 304 TLTSTTSQSGGGAFALGQVHNEVR-HDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQAD 376 (526) Q Consensus 304 tltt~~~~~~~gS~a~~~vh~~v~-~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~ed 376 (526) .--.+..++++|+++..+....++ ..-+.--++.|++ +|..|... ..+|.-......| T Consensus 282 p~llGi~~~~t~~~sn~e~~~~~f~~~~l~Pl~~~iee-~n~~L~~e--------------~~rF~~~~l~~~d 340 (340) T protein:vir:98 282 FQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGME--------------VIRFKEYTLDNPE 340 (340) T ss_pred HHHhcccCCCCCccccHHHHHHHHHHHHHHHHHHHHHH-HHhccccc--------------ccccCccccccCC Confidence 544433333334444333222221 1222233333332 33222111 1122111111122 No 112 >protein:vir:103971 Length: 376 # NCBI annotation: pbsx family phage portal protein # Family: family:all:196 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293752;genbank:gi:72537722;genbank:GeneID:3608098 Probab=99.17 E-value=4.9e-10 Score=71.62 Aligned_cols=337 Identities=13% Similarity=0.053 Sum_probs=182.6 Q ss_pred CCeeecCCCCccCccccchhh----hh----hhhhhhh--hhh-hhhhcccCHHHHHHHHHcccCCCH----HHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQ----TS----RLAGLAK--EFA-QHPAKGLTPAKLARILVEAEQGNL----QAQAELFM 65 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~----~~----~~~~~~~--~~~-~~~~~~l~~~~~~~~l~~a~~g~~----~~~~~l~~ 65 (526) -+.|+.+-.-|.+.+.-+.+. ++ ..++..+ .|. +.|..-++...+-+.++-...|++ -....|. T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fg~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~La- 93 (376) T protein:vir:10 15 HSFIFIHGVLRMSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLA- 93 (376) T ss_pred ccchhhcccccchhccCCCcccchhhhhHhhhccCcceeEEEEcCCceeccCcchhhhhhhhhhcCceecCCCCHHHHH- Confidence 223333333333322211111 10 0111111 222 122222454445555555556641 1222232 Q ss_pred HHHhccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecC Q lcl|Aclame:pro 66 DMEERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQG 145 (526) Q Consensus 66 ~m~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~ 145 (526) .+.+..+|..++|..++.-+.+. +.|+..-+. ..|..++ ++.+.+|.+.+|++.+..| T Consensus 94 ~~~~~~~~h~s~l~~k~n~l~~~---~~Pnp~lT~----------------~~f~~~v---~d~ll~Gnay~~~~rn~~G 151 (376) T protein:vir:10 94 KSFRASTHHSSALFFKANVLAST---FRPHRWLSR----------------HAFERWA---LDFLTFGNGYLERRRNMVG 151 (376) T ss_pred HHHhhhHHhhhhHHHHhHHHHhc---cCCCCCCCH----------------HHHHHHH---HHHHhcCCeEEEEEECCCC Confidence 33457899999998887766652 455433211 0133444 3556789999999876554 Q ss_pred CeeEEeeeeeecCceeEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 146 REWMPLAFHHRPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAE 225 (526) Q Consensus 146 g~~~~~~l~~r~~~~f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~ 225 (526) .+..|.+.++.+.+...+.+..+... .......+++...++.+.....+..||.+.+..+.-....-....++-.. T Consensus 152 ---~~~~L~pl~~~~vr~~~d~~~~~~~~-~~~~~~~~~~~eViHir~~~~~~~~yGls~~~~a~~si~l~~aa~~f~~~ 227 (376) T protein:vir:10 152 ---GTLRLEPALAKYVRRKADFNGFVYVN-GWQERHEFEPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRK 227 (376) T ss_pred ---CEEEEEEeCCcceEEEeeCCeEEEEE-cCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHH Confidence 36688999998887766655444333 33444567777766555544457789999998888888777777777778 Q ss_pred HHHHcCCceEEEecC-CCCCHHHHHHHHHHHHHhhc--C--eEEE-ecCC--ceEEEeecCC-CChHHHHHHHHHHHHHH Q lcl|Aclame:pro 226 MLEIYGLPIRLGKYP-PGTADEEKATLLRAVTGLGH--A--AAGI-IPET--MAIDFQQAAQ-GSSEPFLAMMRQSEDAI 296 (526) Q Consensus 226 f~E~~G~P~~vgk~~-~~~~~~e~~~l~~al~~~~~--~--~~~i-ip~~--~~ie~~~a~~-~~~~~~~~li~~~d~~I 296 (526) |.+.-+.|--|.+++ +..++++++++.+++.+... + ..+| .|.| ..++++..+. ..-..|.+.-++-.++| T Consensus 228 ~f~NGa~pggIl~~~d~~l~~e~~~~lr~~~~~~~G~~N~~~~~vl~~~g~~~Gi~~~pls~~~~d~qf~e~k~~~~~eI 307 (376) T protein:vir:10 228 YYENGSHAGFILYMTDAAQKQDDVDNMRDALKNAKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDL 307 (376) T ss_pred HHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCccccCceeEecCCCCccceEEEEccCCHHHHHHHHHHHHhHHHH Confidence 888888888777764 56789999999888887532 1 1233 3432 2345554432 23346888888889999 Q ss_pred HHHHhchhhhcccccccchhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCcccc Q lcl|Aclame:pro 297 SKAVLGGTLTSTTSQSGGGAFALGQVHNEVRH-DLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQA 375 (526) Q Consensus 297 sk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~-~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~e 375 (526) +.+...+..-.+..++++++++-.+....++. .-+.--++.|++ +|..|... + |+|+..+=. T Consensus 308 a~af~VPp~llGi~~~~t~~~sn~eq~~~~f~~~~L~Pl~~~iee-ln~~L~~~--------------~--~~F~~~~Ll 370 (376) T protein:vir:10 308 LAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQARFAE-LNDWLGEE--------------V--VRFDDYEIP 370 (376) T ss_pred HHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH-HHhhcccc--------------c--cccChhHhh Confidence 99987665444333333444544333333222 333334444432 33222111 1 333322211 Q ss_pred CHHHHH Q lcl|Aclame:pro 376 DITSMA 381 (526) Q Consensus 376 dl~~~a 381 (526) .....| T Consensus 371 r~d~ka 376 (376) T protein:vir:10 371 PAPVAA 376 (376) T ss_pred cccccC Confidence 111111 No 113 >protein:vir:3420 Length: 533 # NCBI annotation: capsid component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040583;genbank:gi:9626247;genbank:GeneID:2703526 Probab=99.17 E-value=9.6e-10 Score=70.02 Aligned_cols=429 Identities=11% Similarity=0.055 Sum_probs=199.5 Q ss_pred CCe---eecCCCCccCccccchhhhhhhh--hhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHH Q lcl|Aclame:pro 1 MAQ---IVDVYGNPIRTQQLREPQTSRLA--GLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLF 75 (526) Q Consensus 1 m~~---~~~~~g~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~ 75 (526) |+- +.++.+. ...+......-+ +..+.+..|.....++.... ..+......-.+++...++++. T Consensus 3 ~p~~~~~~~~~~~----~~~~~~~~y~~~a~~~~~~~~~w~p~~~s~~~~~-------~~~~~~lr~RaRdl~rNn~~a~ 71 (533) T protein:vir:34 3 TPTIPTLLGPDGM----TSLREYAGYHGGGSGFGGQLRSWNPPSESVDAAL-------LPNFTRGNARADDLVRNNGYAA 71 (533) T ss_pred Cchhhhhhccccc----chHHHHHhhhhccCCCCCcccccccCCCCHHHHH-------HHHHHHHHHHHHHHHhcChHHH Confidence 221 1111110 000000111100 11222333322222322211 1234445566778888999999 Q ss_pred HHHHHHHHHHhcCCceEecCCC------CCHHHHHHHHHHHHHHhc-------------CcCHHHHHHHHHH-hhhhcce Q lcl|Aclame:pro 76 AEMSKRKRAILGLDWAVEPPRN------ASAAEKADADYLHELLLD-------------LEGLEDLLLDALD-GIGHGYS 135 (526) Q Consensus 76 s~l~~Rk~av~~~~w~v~~~~~------~~~~~~~~a~~v~~~l~~-------------~~~~~~~i~~~ld-a~~~G~s 135 (526) ++++.....|.+..+.+.+.-+ +...+++..+.|+..+.. .-+|..+...++. .+--|=. T Consensus 72 ~av~~~~~nvVG~Gi~~~~~p~~~~lg~~~~~~~~~~~~ie~~w~~w~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~ 151 (533) T protein:vir:34 72 NAIQLHQDHIVGSFFRLSHRPSWRYLGIGEEEARAFSREVEAAWKEFAEDDCCCIDVERKRTFTMMIREGVAMHAFNGEL 151 (533) T ss_pred HHHHHHHHHhhCCCceeeeccchhhcCCChhHHHHHHHHHHHHHHHhhcCccceeccccccCHHHHHHHHHHHHHhCCce Confidence 9999999999999888876422 123344455555444421 1147777776665 4668888 Q ss_pred eeeEEEeecCCeeEEeeeeeecCceeEe----------------cccCCce-E-EeccCCC-----Cceeec-----CCC Q lcl|Aclame:pro 136 CIELEWALQGREWMPLAFHHRPQSWFQL----------------NPEDQNE-L-RLRDNSP-----AGEALQ-----PFG 187 (526) Q Consensus 136 ~~Ei~w~~~~g~~~~~~l~~r~~~~f~~----------------~~~~~~~-l-~~~~~~~-----~g~~lp-----~~k 187 (526) ++-+.|....|...+-+|..+++.++.. |..++.. + +.+...+ ...-++ +.. T Consensus 152 f~~~~~~~~~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v~a~ 231 (533) T protein:vir:34 152 FVQATWDTSSSRLFRTQFRMVSPKRISNPNNTGDSRNCRAGVQINDSGAALGYYVSEDGYPGWMPQKWTWIPRELPGGRA 231 (533) T ss_pred EEEeeeccCCCCccceEEEEechhhcCCCCCCCCCCceEeeeEECCCCCeEEEEEeecCCCCccccccceeeeeeccChh Confidence 8888898876655555666665544322 2111110 0 1111100 001111 123 Q ss_pred eEEEeecC-CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCC-----------CHHHHHHHHH-- Q lcl|Aclame:pro 188 WIIHRPRA-RSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGT-----------ADEEKATLLR-- 253 (526) Q Consensus 188 ~i~~~~~~-~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~-----------~~~e~~~l~~-- 253 (526) -|+|.+.. ..|..-|.+.|..+.....-........+.-...-.+=..+.|.+.+. .+.....+.. T Consensus 232 ~VlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (533) T protein:vir:34 232 SFIHVFEPVEDGQTRGANVFYSVMEQMKMLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFILGANSQEQRERLTGWI 311 (533) T ss_pred HeeeeccccCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeeecCCCcccccccccCCCcccccccccccc Confidence 47777655 478888999887776554333222222222222211111222221110 0111111111 Q ss_pred ---------HHHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHH Q lcl|Aclame:pro 254 ---------AVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHN 324 (526) Q Consensus 254 ---------al~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~ 324 (526) .-..++......++.|.+|+|.+.+.. +..|..|.+.+-+.|+..+ |-+-..-+++-...||+..-.-. T Consensus 312 ~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~~~~p-~~~~~~f~~~~lr~iAagl-Gi~ye~lt~D~s~~nYSS~R~~~ 389 (533) T protein:vir:34 312 GEIAAYYAAAPVRLGGAKVPHLMPGDSLNLQTAQDT-DNGYSVFEQSLLRYIAAGL-GVSYEQLSRNYAQMSYSTARASA 389 (533) T ss_pred hhhhhccCcceeeccCceeeecCCCCeeeecCCCCC-CCCHHHHHHHHHHHHHhhc-CCCHHHHhhhcccccHHHHHHHH Confidence 112367778888999999999986543 3458999999999999996 44422222332345666555444 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcC----CCCCC------cccce--eEEecCccccCHHHHHHHHHHHHh Q lcl|Aclame:pro 325 EVRHDLLASDARQLAATLSRDLLWPLLV---LNR----PGSPD------VRRAP--RLVFDLREQADITSMAQSIPALVN 389 (526) Q Consensus 325 ~v~~~~~~ad~~~i~~~ln~~li~~l~~---~Nf----~~~~~------~~~~p--~~~~~~~e~edl~~~a~~~~~l~~ 389 (526) .-+...++.....+...+-+-+...+++ ++. ++... ...+. .+.-......|..+-+++....++ T Consensus 390 ~e~~r~~~~~q~~~~~~~~~pi~~~wl~~ail~G~i~~p~~~~~~~~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~ 469 (533) T protein:vir:34 390 NESWAYFMGRRKFVASRQASQMFLCWLEEAIVRRVVTLPSKARFSFQEARSAWGNCDWIGSGRMAIDGLKEVQEAVMLIE 469 (533) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCccCCCchhhHHhhhceeeccCCccccChHHHHHHHHHHHH Confidence 4455555555555555554444444443 221 11100 01111 223334455688888889999999 Q ss_pred CCCcCCHHHHHHHhCCCCCCccchhc-----------ccCCCcccccccccccccccccccccccccccchHHHHH Q lcl|Aclame:pro 390 VGLEIPSAWVYDKLGIPQPAKNEPVL-----------RSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALA 454 (526) Q Consensus 390 ~G~~v~~~~~~e~~Glp~~~~~e~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (526) +|+ .|.+.+..+.|..+.+-.+++. .....+........ ...... +..+.... T Consensus 470 ~G~-~s~~~~~a~~G~D~~ev~~q~a~e~~~~~~~gl~~~~~~~~~~~s~~-----~~~~~~------~~~~~~~~ 533 (533) T protein:vir:34 470 AGL-STYEKECAKRGDDYQEIFAQQVRETMERRAAGLKPPAWAAAAFESGL-----RQSTEE------EKSDSRAA 533 (533) T ss_pred cCC-CCHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcCccCCC-----CCCCCC------CcccCCCC Confidence 998 4444443344553322111110 00000000000000 000000 00000000 No 114 >protein:vir:1150 Length: 350 # NCBI annotation: predicted capsid packaging protein # Family: family:all:196 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490599;genbank:gi:17313219;genbank:GeneID:927315 Probab=99.16 E-value=4e-10 Score=72.10 Aligned_cols=328 Identities=13% Similarity=0.063 Sum_probs=179.4 Q ss_pred CCeeecCCCCccCccccchh----hhhhhhhhhhhhh-hhhhcccCHHHHHHHHHcccCCC-------HHHHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREP----QTSRLAGLAKEFA-QHPAKGLTPAKLARILVEAEQGN-------LQAQAELFMDME 68 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~l~~~~~~~~l~~a~~g~-------~~~~~~l~~~m~ 68 (526) |+|---...+ ....+... +++.-++....+. +.|..-++...+.+.+.-...|+ +..+++++ T Consensus 1 m~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~y~~~~~~~~~~~pp~~~~~la~~~---- 74 (350) T protein:vir:11 1 MSKRRSHRRQ--QPVTVQSAQEGEFIPRQGGRAEAFTFGDPMPVLDGRGILDYLECWPNGRWYEPPLSMEGLAKSV---- 74 (350) T ss_pred CCccccCCCc--CccccCCcchhhhccccccceEEEEeCCceeecCcchhhHHHHHhhcCccccCCCCHHHHHHHH---- Confidence 9984222211 11111111 1111111111121 12222234443444444444554 22333333 Q ss_pred hccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecCCee Q lcl|Aclame:pro 69 ERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREW 148 (526) Q Consensus 69 ~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~ 148 (526) +..+|-.++|..++.-+.+. +.|+..-+.. .|..++ .+.+.+|.+.+|++.+..| T Consensus 75 ~~~~~h~~~l~~k~n~l~~~---~~Pn~~~t~~----------------~f~~~v---~d~ll~Gnay~~~~rn~~G--- 129 (350) T protein:vir:11 75 GSSVYLQSGLKFKRNMLAKT---FIPHRLLSRA----------------TFEQFS---LDWLTFGSAYLEQPRSRLG--- 129 (350) T ss_pred hhhhhhccchhhhhhhhhhc---ccCCCCCCHH----------------HHHHHH---HHHHhcCCeEEEEEEcCCC--- Confidence 45788888888776655542 4554432210 133443 3556789999999876543 Q ss_pred EEeeeeeecCceeEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 149 MPLAFHHRPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLE 228 (526) Q Consensus 149 ~~~~l~~r~~~~f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E 228 (526) .+..|.+.++.+.+...+++..+.+.. ......+++...++.+.....+..||.+.+..+.-....-.....+-..|.. T Consensus 130 ~~~~L~~l~~~~vr~~~~~~~~~~~~~-~~~~~~~~~~eVihir~~~~~~~~yGls~~~~a~~si~l~~~a~~~~~~~f~ 208 (350) T protein:vir:11 130 TRMPLQAPLAKYMRRGTDLETFYQVRS-WKDEHEFEKGSVIQLREADINQEIYGVPEWFCALQSALLNESATLFRRKYYN 208 (350) T ss_pred CEEEEEEeCCceeEeeecCCeEEEEee-CCeEEEECcccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh Confidence 356789999988887776665444443 3344567777766555444456778999999988888887777777788888 Q ss_pred HcCCceEEEecC-CCCCHHHHHHHHHHHHHhhc--C---eEEEecCC--ceEEEeecCC-CChHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 229 IYGLPIRLGKYP-PGTADEEKATLLRAVTGLGH--A---AAGIIPET--MAIDFQQAAQ-GSSEPFLAMMRQSEDAISKA 299 (526) Q Consensus 229 ~~G~P~~vgk~~-~~~~~~e~~~l~~al~~~~~--~---~~~iip~~--~~ie~~~a~~-~~~~~~~~li~~~d~~Isk~ 299 (526) ..+.|--|.+++ +..++++++++.+++++..+ + ..+..|.| ..++++..+. ..-..|.+.-++-..+|+.+ T Consensus 209 NGa~~~gil~~~~~~ls~e~~~~l~~~~~~~~G~~N~~~~~v~~~~g~~~g~~~~pl~~~~~d~qf~e~k~~~~~eIa~a 288 (350) T protein:vir:11 209 NGSHAGFILYMTDAAQNEEDIDALRTALKTAKGPGNFRNLFVYAPNGKKEGIQLIPVSEVAAKDEFGSIKNISRDDQLAG 288 (350) T ss_pred ccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCccccCceeeecCCCCccceEEEEcCCChhHHHHHHHHHHhHHHHHHH Confidence 888888887775 56789999999988877522 1 12333432 2345554432 22346888888999999999 Q ss_pred HhchhhhcccccccchhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCH Q lcl|Aclame:pro 300 VLGGTLTSTTSQSGGGAFALGQVHNEV-RHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADI 377 (526) Q Consensus 300 ilGqtltt~~~~~~~gS~a~~~vh~~v-~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl 377 (526) ...+.--.+..++++|+++-.+....+ ...-+.--++.+++ +|+.|.+.. ++|..-.-.+| T Consensus 289 ~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~L~P~~~~ie~-ln~~l~~~~----------------~~F~~~~~~~l 350 (350) T protein:vir:11 289 LRVYPQLMGVVPQNAGGFGSISDAAAVWASLELAPMQTRLQQ-VNEMIGEEV----------------VRFAQFDAPGL 350 (350) T ss_pred hCCCHHHhcccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHH-HHhhcCccc----------------cccCcccccCC Confidence 876654333222333444433333333 22334445555543 444332221 12222222222 No 115 >protein:vir:267 Length: 348 # NCBI annotation: putative capsid portal protein # Family: family:all:196 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536647;genbank:gi:17975125;genbank:GeneID:929081 Probab=99.16 E-value=6.7e-10 Score=70.89 Aligned_cols=327 Identities=10% Similarity=0.015 Sum_probs=177.2 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhh--hhhccc---CHHHHHHHHHcccCC------CHHHHHHHHHHHHh Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQ--HPAKGL---TPAKLARILVEAEQG------NLQAQAELFMDMEE 69 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l---~~~~~~~~l~~a~~g------~~~~~~~l~~~m~~ 69 (526) |.+ + + ...++..-+.....|.. .|..-+ +.-++..+..+-... ++..+.+++ + T Consensus 1 ~~~---~----~-----~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~epp~~~~~La~l~----~ 64 (348) T protein:vir:26 1 MTE---Q----L-----IHSHTTDGTESKSVYSFDPNPEPVDTNSWMTRYCELFYNDFDDYWEPPISLKGLAEIA----N 64 (348) T ss_pred CCc---c----c-----cchhhccccCCceEEEecCCCeeecCcchHHHHHHHHhcCCCccccCCCCHHHHHHHH----h Confidence 442 0 0 00000000000011111 121112 222333333322211 133344443 4 Q ss_pred ccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecCCeeE Q lcl|Aclame:pro 70 RDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWM 149 (526) Q Consensus 70 ~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~~ 149 (526) ..+|..++|..++.-+.+. +.|+..-+.. .|..++ ++.+.+|.+.+|++.+..| . T Consensus 65 ~n~~h~~~i~~k~N~l~~~---~~Pn~~~t~~----------------~f~~~~---~d~ll~Gnay~~~~rn~~G---~ 119 (348) T protein:vir:26 65 ANGYHGSLLKARANYVAGR---FMNGGGLPMY----------------KMNSAC---WDYFGLGMSAFVKIRSYLK---N 119 (348) T ss_pred hhhhhhhhHhhhhhHHhhc---ccCCCCCCHH----------------HHHHHH---HHHHhcCCeEEEEEEcCCC---c Confidence 7999999999888877663 4665432210 133333 4556789999999876544 3 Q ss_pred EeeeeeecCceeEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 150 PLAFHHRPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEI 229 (526) Q Consensus 150 ~~~l~~r~~~~f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~ 229 (526) +..|.+.|+.+.+...+++. ..+.. ......+++...++.+.....+..||.+.+..+.-....-.....+-..|.+. T Consensus 120 ~~~L~~l~~~~v~~~~d~~~-~~~~~-~g~~~~f~~~dIiHir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~N 197 (348) T protein:vir:26 120 VIALEPLPMVHMRKRKNGDF-VQLLR-NNEQKVFKAKDVIFIPQYDPQQQIYGLPDYLGSIQSSLLNRDATLFRRRYYLN 197 (348) T ss_pred EEEEEEecCceeEeeecCcE-EEEEe-cCeEEEEcCccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 56888999888877665442 22222 23445677777665554343567789999888888888777777777788877 Q ss_pred cCCceEEEec-CCCCCHHHHHHHHHHHHHhhc--C---eEEEecCCc--eEEEeecCCC-ChHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 230 YGLPIRLGKY-PPGTADEEKATLLRAVTGLGH--A---AAGIIPETM--AIDFQQAAQG-SSEPFLAMMRQSEDAISKAV 300 (526) Q Consensus 230 ~G~P~~vgk~-~~~~~~~e~~~l~~al~~~~~--~---~~~iip~~~--~ie~~~a~~~-~~~~~~~li~~~d~~Isk~i 300 (526) .+.|--|.+. ++..++++++++.+++++... + .++.+|.|. .+++...+.. .-+.|.+.-++-..+|+.+. T Consensus 198 Ga~pg~Il~~~~~~ls~e~~~~lk~~~~~~~G~~n~~~~~vl~~~g~~~Gi~~~pis~~~~d~qf~e~k~~t~~dIa~af 277 (348) T protein:vir:26 198 GAHMGFIFYATDPNLSEADEKALKEKIASSKGIGNFRSMFVNIPNGKEKGIQLIPVGDIATKDEFERIKNITAQDIFVGH 277 (348) T ss_pred cCCCceEEEecCCCCCHHHHHHHHHHHHHhcCcccccceeEEcCCCCccceeEEEccCChhHHHHHHHHHhhHHHHHHHh Confidence 7888777654 456889999999998887532 1 223334332 3455554322 23458888888888999998 Q ss_pred hchhhhcccccccchhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHH Q lcl|Aclame:pro 301 LGGTLTSTTSQSGGGAFALGQVHNEV-RHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITS 379 (526) Q Consensus 301 lGqtltt~~~~~~~gS~a~~~vh~~v-~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~ 379 (526) ..+.--.+...+++++++-.+....+ ...-+.-.++.|+..||+.+. ++ .. -+|+|+.....+-.. T Consensus 278 ~VPp~llGi~~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~~l~-------~~----~~--~~~~fdl~~~~e~~~ 344 (348) T protein:vir:26 278 RFPAGMGGMLPQQGANVPDPLKVSQVYDFYEVIPVCKRFMDAVNNDPE-------IP----DN--LKLKFNLNPGVESAN 344 (348) T ss_pred CCCHHHccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhC-------CC----Cc--cEEEEecCcccccch Confidence 66644333222233444433333333 335556666777777776431 11 11 135554332222222 Q ss_pred HHHHH Q lcl|Aclame:pro 380 MAQSI 384 (526) Q Consensus 380 ~a~~~ 384 (526) .+ ++ T Consensus 345 ~~-a~ 348 (348) T protein:vir:26 345 GS-AV 348 (348) T ss_pred hh-cC Confidence 11 11 No 116 >protein:vir:79207 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111036;genbank:gi:134288763;genbank:GeneID:4960726 Probab=99.15 E-value=2.9e-10 Score=72.87 Aligned_cols=332 Identities=13% Similarity=0.079 Sum_probs=178.3 Q ss_pred CCeeecCCCCccCccccchhhhhhh-hhhhhhhh-hhhhcccCHHHHHHHHHcccCCC-------HHHHHHHHHHHHhcc Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRL-AGLAKEFA-QHPAKGLTPAKLARILVEAEQGN-------LQAQAELFMDMEERD 71 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~~~~~~~~l~~a~~g~-------~~~~~~l~~~m~~~D 71 (526) |++ -..=++-......++.+.+- .+....|. +.|..-++...+.+.++-...|+ +..+.++ .+.. T Consensus 1 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~----~~~~ 74 (351) T protein:vir:79 1 MSK--RRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKS----FRAS 74 (351) T ss_pred CCC--CCCCCCCCCCCCCchhhhhcccceeEEEEcCCceeecCcchhhhhhhhhhcCceecCCCCHHHHHHH----Hhhh Confidence 886 11111111111111111110 01111221 12222244444445555555665 2233333 3469 Q ss_pred HHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecCCeeEEe Q lcl|Aclame:pro 72 AHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPL 151 (526) Q Consensus 72 ~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~~~~ 151 (526) +|..++|..++.-+.+. +.|+..-+.. .|..++ ++.+.+|.+.+|++.+..| .+. T Consensus 75 ~~h~~~l~~k~n~l~~~---~~Pnp~~t~~----------------~f~~~v---~d~ll~Gnay~~~~r~~~G---~~~ 129 (351) T protein:vir:79 75 THHSSALFFKANVLAST---FRPHRWLSRH----------------AFERWA---LDFLTFGNGYLERRRNMVG---GTL 129 (351) T ss_pred HhhhhhhhhhhhHHhhc---ccCCCCCCHH----------------HHHHHH---HHHHhcCCeEEEEEECCCC---CEE Confidence 99999998877777663 4555432211 133333 3556789999999876544 356 Q ss_pred eeeeecCceeEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcC Q lcl|Aclame:pro 152 AFHHRPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYG 231 (526) Q Consensus 152 ~l~~r~~~~f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G 231 (526) .|.+.++.+.+...+.+....+. .......+++...++.+.....+..||.+.+..+......-.....+-..|.+..+ T Consensus 130 ~L~~l~~~~v~~~~~~~~~~~~~-~~g~~~~~~~~eIihir~~~~~~~~yGl~~~~~a~~si~l~~~a~~~~~~~f~NGa 208 (351) T protein:vir:79 130 RLEPALAKYVRRKADFSGFVYVN-GWQERHEFEPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGS 208 (351) T ss_pred EEEEeCCcceeeeecCCeEEEEe-cCceEEEEcCccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccC Confidence 88999998888766655443333 33334556777655444444457789999999888888887777777778888888 Q ss_pred CceEEEecC-CCCCHHHHHHHHHHHHHhhc--C---eEEEecCCc--eEEEeecCC-CChHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 232 LPIRLGKYP-PGTADEEKATLLRAVTGLGH--A---AAGIIPETM--AIDFQQAAQ-GSSEPFLAMMRQSEDAISKAVLG 302 (526) Q Consensus 232 ~P~~vgk~~-~~~~~~e~~~l~~al~~~~~--~---~~~iip~~~--~ie~~~a~~-~~~~~~~~li~~~d~~Isk~ilG 302 (526) .|--|.+++ +..++++++++.+++++... + ..+.+|.+. .++++..+. ..-..|.+.-++-.++|+.+... T Consensus 209 ~pg~il~~~~~~ls~e~~~~lk~~~~~~~G~~N~~~~~v~~~~g~~~gi~~~pl~~~~~d~ef~e~k~~s~~eI~~a~~V 288 (351) T protein:vir:79 209 HAGFILYMTDAAQKQDDVDNMRDALKNAKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRV 288 (351) T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHHhcCccccCceeEecCCCCccceEEEEcCCChhHHHHHHHHHHhHHHHHHHhCC Confidence 887777654 56788999999888877532 1 223344432 355555432 23346888888999999999866 Q ss_pred hhhhcccccccchhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHH Q lcl|Aclame:pro 303 GTLTSTTSQSGGGAFALGQVHNEVRH-DLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMA 381 (526) Q Consensus 303 qtltt~~~~~~~gS~a~~~vh~~v~~-~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a 381 (526) +..-.+..++++++++-.+....++. .-+.--++.|++ +|..| +. . .++|+..+=......| T Consensus 289 Pp~llGi~~~~t~~~~n~e~~~~~f~~~~l~Pl~~~ie~-ln~~l----------g~-~-----~~~F~~~~llr~d~~a 351 (351) T protein:vir:79 289 PPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQARFAE-LNDWL----------GD-E-----VVTFDDYEIPPAPVAA 351 (351) T ss_pred CHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH-HHhhc----------Cc-c-----eeeeChhhhccccccC Confidence 65444333333344443333332221 222333333332 22211 11 1 2344332211111111 No 117 >protein:vir:1236 Length: 483 # NCBI annotation: similar to phage Spp1 gp6 (portal protein) # Family: family:all:125 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510935;genbank:gi:17426269;genbank:GeneID:927380 Probab=99.12 E-value=1.7e-09 Score=68.66 Aligned_cols=412 Identities=12% Similarity=0.029 Sum_probs=194.6 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhh-hhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHh---------- Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKE-FAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEE---------- 69 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~---------- 69 (526) |++-+=+-|+.+- |.+++....... +....-..++...+...+.... ....++..+++...- T Consensus 1 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~i~~~~-~~~~r~~~l~~YY~g~~~i~~~~~~ 73 (483) T protein:vir:12 1 MAQALIKGGNILY------PSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHL-EKLPEISIGQEYYEQRPDIVKEPKP 73 (483) T ss_pred CccchhcCCceee------cCcchhhhhhhcccccCCchhhHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccccccccc Confidence 8887766677442 222211111111 1111111122222222222221 122222222221100 Q ss_pred ----------------ccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-Hhhhh Q lcl|Aclame:pro 70 ----------------RDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGH 132 (526) Q Consensus 70 ----------------~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~ 132 (526) -.....-++.+...-+.+.+..+... +....+++++++.+ +|.+.+.++. ++.-| T Consensus 74 ~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~~l~G~p~~~~~~------d~~~~~~l~~~~~n--~~~~~~~~~~~~~~~~ 145 (483) T protein:vir:12 74 VDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHT------DDEVVKRIDEVLGN--RFDDKLHSVLTGASNK 145 (483) T ss_pred ccccccccccccccccccchHHHHHHHHhhhhcccCceeccC------ChHHHHHHHHHHhc--cHHHHHHHHHHHHhhC Confidence 13444455566666667777776532 23456778887764 4777777654 68889 Q ss_pred cceeeeEEEeecCCeeEEeeeeeecCcee--EecccC-Cce---EEec-cCCCCceeec--------------------- Q lcl|Aclame:pro 133 GYSCIELEWALQGREWMPLAFHHRPQSWF--QLNPED-QNE---LRLR-DNSPAGEALQ--------------------- 184 (526) Q Consensus 133 G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f--~~~~~~-~~~---l~~~-~~~~~g~~lp--------------------- 184 (526) |.+ .+++|...+|...+. ..+|+.. .|+... +.. +++. ........+. T Consensus 146 G~~-y~~v~~d~d~~~~i~---~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~ 221 (483) T protein:vir:12 146 GIE-WLHPYLDEEGEFKLF---RVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSN 221 (483) T ss_pred CeE-EEEEEEcCCCceEEE---EEcccceEEEEcCCCCCceEEEEEEEEeecceEEEEEecCeEEEEEEeCCeeeecccc Confidence 985 456665445554332 2333221 112110 000 0000 0000000110 Q ss_pred ------------CCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHH Q lcl|Aclame:pro 185 ------------PFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLL 252 (526) Q Consensus 185 ------------~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~ 252 (526) ++..+-...- ..|+.|.|.+..+....=--...+..++..++-|+.|.++.+-......++. T Consensus 222 ~~~~~~~~~~~~~~g~vPvv~~--~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~---- 295 (483) T protein:vir:12 222 NLENSKTHFSTGSWGKIPFIPF--KNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLTNYDDQELPEF---- 295 (483) T ss_pred cccccccccccCCCCccceEEe--cCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccchhH---- Confidence 1111100100 2367899999886655555666788999999999999999874332222221 Q ss_pred HHHHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHH Q lcl|Aclame:pro 253 RAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLA 332 (526) Q Consensus 253 ~al~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ 332 (526) ...+....++.++.+.++++++. ..+...++.+++.+.+.|.+.-....++.+...++.+.-|+ +....-....+. T Consensus 296 --~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al-~~~~~~l~~k~~ 371 (483) T protein:vir:12 296 --KRLLRYYGAIKVSDNGGVDTIQV-EVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVAL-EFLYTNLNLKAD 371 (483) T ss_pred --HHhhhhccccccCCCCcceEEee-cCCHHHHHHHHHHHHHHHHHHhCCCCCCccccccCcHHHHH-HHHHHHHHHHHH Confidence 12334455666788999999974 34556788999999999888865555544322111111111 111111222334 Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCC-CCCCcc Q lcl|Aclame:pro 333 SDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGI-PQPAKN 411 (526) Q Consensus 333 ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Gl-p~~~~~ 411 (526) .-.+.+...+. ++++.++.+.--. .......+.|....+.|..+.++.+.++. |+ +|.+.+.+.++. +.+..+ T Consensus 372 ~~~~~f~~~l~-~~~~li~~~~~~~--~~~~~i~v~f~~~~p~~~~~~a~~~~kl~--Gi-iS~et~~~~~~~v~d~~~E 445 (483) T protein:vir:12 372 KLARKAKVAIQ-ELLWFVFEHFDIK--GEHKDVDISFNYNKVANTELQVQTAQQSM--GI-VSHETVLENHPFVEDLQAE 445 (483) T ss_pred HHHHHHHHHHH-HHHHHHHHHhcCC--CccceeeEEeCCCCCCCHHHHHHHHHHHh--cc-CchHHHHHhCCCCCCHHHH Confidence 44455555553 4565555543211 11123467888889999999999999985 76 899988888864 332211 Q ss_pred chhcccCCC--ccccccccccccccccccccccccccc Q lcl|Aclame:pro 412 EPVLRSAAQ--PAILSRQHGQRVAALATIVGPRYGDQQ 447 (526) Q Consensus 412 e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (526) -+-+..... .........................+. T Consensus 446 ~~ri~~E~~~~~~~~~~~~~~~~d~~~~~~~~~~~e~e 483 (483) T protein:vir:12 446 LERIEQEQMEYNKQLPNLDDGGADGAQQQERSNNKESE 483 (483) T ss_pred HHHHHHHHHHHHhhcccccccccCCcccCCCCCcccCC Confidence 000000000 000000000000000000000000000 No 118 >protein:vir:6382 Length: 553 # NCBI annotation: portal protein Lambda B # Family: family:all:47 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918995;genbank:gi:34610170;genbank:GeneID:2559575 Probab=99.12 E-value=1.7e-09 Score=68.61 Aligned_cols=432 Identities=9% Similarity=-0.014 Sum_probs=207.7 Q ss_pred eecCCCCccCccccchhhh-hhhh--------hhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHH Q lcl|Aclame:pro 4 IVDVYGNPIRTQQLREPQT-SRLA--------GLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHL 74 (526) Q Consensus 4 ~~~~~g~p~~~~~~~~~~~-~~~~--------~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v 74 (526) +.+.-++++..-....+.. +... ...+.+..|.....++.. .+ ..+......-.+++...++++ T Consensus 1 m~~~~~r~~~~~a~~~~~~~~~~~~~~y~gA~~~~r~~~~w~~~~~s~~~--~~-----~~~~~~lr~RaRdL~rNn~~a 73 (553) T protein:vir:63 1 MTKVTVRKLSEVTSGRPEQSASLGGGGLEGASRLSRETVSWNPSLRSPDA--LI-----NPLKRIADARGRDMADNDGFT 73 (553) T ss_pred CcchhhhhhcccccccchhhhhhhcccccccccCCCcccccccCCCChHH--HH-----HHHHHHHHHHHHHHHhcChHH Confidence 4467777775433332211 1111 111222222222222221 11 124455666677888899999 Q ss_pred HHHHHHHHHHHhcCCceEecCCC-------CCHHHHHHHHHHHHHHhc-------------CcCHHHHHHHHHH-hhhhc Q lcl|Aclame:pro 75 FAEMSKRKRAILGLDWAVEPPRN-------ASAAEKADADYLHELLLD-------------LEGLEDLLLDALD-GIGHG 133 (526) Q Consensus 75 ~s~l~~Rk~av~~~~w~v~~~~~-------~~~~~~~~a~~v~~~l~~-------------~~~~~~~i~~~ld-a~~~G 133 (526) .++++.....|.+..+.+.+.-+ +...+++..+.|+..|.. .-+|..+...++. .+.-| T Consensus 74 ~~av~~~~~nvVG~Gi~~~~~~~~~~l~g~~~~~~~~~~~~ie~~w~~wa~~~~~~~D~~g~~~f~~~q~l~~r~~~~dG 153 (553) T protein:vir:63 74 NGAVGYQRDSIVGAQYRLNSMPDINVIPGATEEWAEEYQTIVEAKFELYAESLACYIDNAAISTFTGLIRLGVVGYVKTG 153 (553) T ss_pred HHHHHHHHHhhccCCceeeeccchhhhcCCCHHHHHHHHHHHHHHHHHhcCCccceeeccccCCHHHHHHHHHHHHHhCC Confidence 99999999999998888776422 223344444555444321 1147777776664 56688 Q ss_pred ceeeeEEEeecCCeeEEeeeeeecCceeEec----------------ccCCceE--EeccCCCCc--------------- Q lcl|Aclame:pro 134 YSCIELEWALQGREWMPLAFHHRPQSWFQLN----------------PEDQNEL--RLRDNSPAG--------------- 180 (526) Q Consensus 134 ~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~~----------------~~~~~~l--~~~~~~~~g--------------- 180 (526) =.++-+.|.+..|...+-+|..+++.++... ..++..- +.+...++. T Consensus 154 E~~~~~~~~~~~~~~~~~~lq~ie~drl~~~~~~~~~~~i~~GVE~d~~Gr~vaY~i~~~hPgd~~~~~~~~~~~~r~~~ 233 (553) T protein:vir:63 154 EVLATAEWDRAANRPYATCFQMVSTDRLSNPYQQLDTPTLRRGVQYDKRGRPQGYWIQVAHPGDLYQMAPDMYKWKFVQQ 233 (553) T ss_pred ceEEEeeeccCCCCcccceEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEeeccCCCccccccccccceeeecc Confidence 8888888987765555556666655443222 1111100 011111110 Q ss_pred -eeecCCCeEEEeecC-CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHH--------- Q lcl|Aclame:pro 181 -EALQPFGWIIHRPRA-RSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKA--------- 249 (526) Q Consensus 181 -~~lp~~k~i~~~~~~-~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~--------- 249 (526) ..+| ..-|+|.+.. ..|..-|.+.|..+.....-........+.-...-.+=..+.|.+.+. +..-. T Consensus 234 ~~~v~-a~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~daeL~~a~i~A~~a~fi~~~~~~-~~~~~~~~~~~~~~ 311 (553) T protein:vir:63 234 SKPWG-RRQVIHILEPREPDQSRGIADIVSGLKDMRMAKRFKEMSLQNAVINASYAAAIESELPP-EFIHSQMSGGSPNA 311 (553) T ss_pred ccccC-hhHheecccccCCCcccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCh-hhhhhhcccccccc Confidence 0122 3346666654 577888999888877655443333333333333322222333332211 00000 Q ss_pred ----------------HHHHHHHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhch--hhhccccc Q lcl|Aclame:pro 250 ----------------TLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGG--TLTSTTSQ 311 (526) Q Consensus 250 ----------------~l~~al~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGq--tltt~~~~ 311 (526) .--.....+.......++.|.+|+|.+.+..+ ..|..|.+.+-+.|+..+... .||.+. T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p~-~~~~~F~~~~lr~iaaglGi~Ye~lt~D~-- 388 (553) T protein:vir:63 312 DMVGIFGKYMDALKAYVGGANNIQIDGAKIPHLFPGTKLNLKPMGTPG-GVGSEFEASLNRHLASAFGMSYEEFTRDF-- 388 (553) T ss_pred cccccccccccccccccccccceeecCceeeecCCCCeeeecCCCCCC-CCHHHHHHHHHHHHHhhcCCCHHHHhhhc-- Confidence 00122345667788889999999999865433 448999999999999996332 244332 Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCCCCc---------ccce--eEEecCcc Q lcl|Aclame:pro 312 SGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLV-------LNRPGSPDV---------RRAP--RLVFDLRE 373 (526) Q Consensus 312 ~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~-------~Nf~~~~~~---------~~~p--~~~~~~~e 373 (526) ...||+.+-.-..-+...++.....+...+-+-+..++++ +..++.... ..+. .+.-.... T Consensus 389 -s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~a~l~G~i~~p~~~~~~~~~~p~~~~a~~~~~w~~p~~~ 467 (553) T protein:vir:63 389 -SKANYSSIQAGIAMTRRFLEGRKKMCADRLATEFFTLWLEEAIAAGEVPMPPGQTRDLFYQPLMKEALSKCEWIGASQG 467 (553) T ss_pred -ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccchhhcchhhhhhhhceeeecCCcc Confidence 2345665544444445555555555555554444444433 122221110 0011 12222334 Q ss_pred ccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcc-----------cCCCcccccccccccccccccccccc Q lcl|Aclame:pro 374 QADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLR-----------SAAQPAILSRQHGQRVAALATIVGPR 442 (526) Q Consensus 374 ~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (526) -.|..+-+++....+..|+. |.+.+....|..+.+-.+++.. ....+....+.........+...... T Consensus 468 ~iDP~Ke~~A~~~~i~~G~~-t~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (553) T protein:vir:63 468 QIDQLKETQAAVMRIDAGLS-TYEREIARLGGDFRKSFAQRAREDALLKKYGLTFNLSAKRSLGDGRDAATGIAEDPAAA 546 (553) T ss_pred ccChHHHHHHHHHHHHcCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCcccCCCCCCCCCCC Confidence 46888888888999999984 3333333335533221111100 00000000000000000000000000 Q ss_pred cccccch Q lcl|Aclame:pro 443 YGDQQAL 449 (526) Q Consensus 443 ~~~~~~~ 449 (526) ...++.. T Consensus 547 ~~~~~~e 553 (553) T protein:vir:63 547 QTSQQGE 553 (553) T ss_pred CcccccC Confidence 0000000 No 119 >protein:vir:2013 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046757;genbank:gi:9630328;genbank:GeneID:1261529 Probab=99.12 E-value=4.8e-10 Score=71.67 Aligned_cols=327 Identities=11% Similarity=0.029 Sum_probs=176.4 Q ss_pred CCeeecCCCCccCccccchhhhhhhh--hhhhhhh-hhhhcccCHHHHHHHHHcccCCCHH----HHHHHHHHHHhccHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLA--GLAKEFA-QHPAKGLTPAKLARILVEAEQGNLQ----AQAELFMDMEERDAH 73 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~l~~~~~~~~l~~a~~g~~~----~~~~l~~~m~~~D~~ 73 (526) |+|--- -+|- ..+.+..+ +....|. +.|..-++...+-+.+.-...|++- ....|. .+.+..+| T Consensus 1 ~~~~~~--~~~~------~~~~~~~~~~~~~~~~~f~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la-~~~~a~~~ 71 (344) T protein:vir:20 1 MSKKKG--KTPQ------PAAKTMTASGPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLA-KSLRAAVH 71 (344) T ss_pred CCcccC--CCCc------chhhhhhccCCceEEEEcCCceEecCcchhhhhhhhhhcCceecCCCCHHHHH-HHHhhhhh Confidence 886111 1111 11111111 1111121 1222224444444455555556421 122222 33346889 Q ss_pred HHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecCCeeEEeee Q lcl|Aclame:pro 74 LFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPLAF 153 (526) Q Consensus 74 v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~~~~~l 153 (526) ..++|..++.-+.+. +.|+..-+. . .|..++ .+-+.+|.+.+|++.+..| .+..| T Consensus 72 h~~~i~~k~n~l~~~---~~Pn~~lt~-----~-----------~f~~~~---~d~ll~Gnay~~i~rn~~G---~~~~L 126 (344) T protein:vir:20 72 HSSPIYVKRNILAST---FIPHPWLSQ-----Q-----------DFSRFV---LDFLVFGNAFLEKRYSTTG---KVIRL 126 (344) T ss_pred hCccceehhhhHHHh---ccCCCCCCH-----H-----------HHHHHH---HHHHhcCCeEEEEEECCCC---cEEEE Confidence 889888777666552 455443221 0 133333 3556789999999875444 46789 Q ss_pred eeecCceeEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCc Q lcl|Aclame:pro 154 HHRPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLP 233 (526) Q Consensus 154 ~~r~~~~f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P 233 (526) .+.++.+.+...+++..+.+. .......+++...++.+.....+..||.+.+..+.-....-.....+-..|.+.-+.| T Consensus 127 ~pl~~~~vr~~~~~~~~~~~~-~~~~~~~~~~~eIiHir~~~~~~~~yGls~~~~a~~si~l~~~a~~~~~~~f~NGa~p 205 (344) T protein:vir:20 127 ETSPAKYTRRGVEEDVYWWVP-SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHA 205 (344) T ss_pred EEcCCceeEeeecCCEEEEEc-cCCeEEEEcCccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCC Confidence 999998888776665433333 3334456777776555544435678999999988888887777777888888888888 Q ss_pred eEEEecC-CCCCHHHHHHHHHHHHHhhc-Ce--EEEe--cCCc--eEEEeecCC-CChHHHHHHHHHHHHHHHHHHhchh Q lcl|Aclame:pro 234 IRLGKYP-PGTADEEKATLLRAVTGLGH-AA--AGII--PETM--AIDFQQAAQ-GSSEPFLAMMRQSEDAISKAVLGGT 304 (526) Q Consensus 234 ~~vgk~~-~~~~~~e~~~l~~al~~~~~-~~--~~ii--p~~~--~ie~~~a~~-~~~~~~~~li~~~d~~Isk~ilGqt 304 (526) --|.+++ +..++++++++.+++++... ++ .+++ |.|. .++++..+. ..-..|.+.-++-..+|+.+...+. T Consensus 206 ~~Il~~~d~~l~~e~~~~ik~~~~~~~g~~n~r~l~l~~p~g~~~gi~~~pis~~~~d~qf~e~k~~s~~eIa~af~VPp 285 (344) T protein:vir:20 206 GYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPF 285 (344) T ss_pred ceEEEecCcCCCHHHHHHHHHHHHHhcCCCCccceEEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCH Confidence 8877754 56789999999998877532 21 2333 4322 345554432 2233588888899999999987665 Q ss_pred hhcccccccchhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCH Q lcl|Aclame:pro 305 LTSTTSQSGGGAFALGQVHNEVR-HDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADI 377 (526) Q Consensus 305 ltt~~~~~~~gS~a~~~vh~~v~-~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl 377 (526) --.+..++++|+++..+-...++ ..-+.--++.+++ +|. +| +... -+|.+...+..|- T Consensus 286 ~llGi~~~~t~~~~n~e~~~~~f~~~~l~P~~~~~e~-in~----~l------g~~~----i~F~~~~l~~~d~ 344 (344) T protein:vir:20 286 QLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-ING----WL------GQEV----IRFKNYSLDTDND 344 (344) T ss_pred HHhccCCCCCCccccHHHHHHHHHHHHHHHHHHHHHH-HHH----hc------CCcc----cccCccccccCCC Confidence 44433333344454433333332 2223333333332 332 22 1111 1222222222221 No 120 >protein:vir:78191 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111155;genbank:gi:134288732;genbank:GeneID:4960651 Probab=99.11 E-value=9.3e-10 Score=70.09 Aligned_cols=332 Identities=12% Similarity=0.072 Sum_probs=177.1 Q ss_pred CCeeecCCCCccCccccchhhhhhh-hhhhhhhh-hhhhcccCHHHHHHHHHcccCCC-------HHHHHHHHHHHHhcc Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRL-AGLAKEFA-QHPAKGLTPAKLARILVEAEQGN-------LQAQAELFMDMEERD 71 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~~~~~~~~l~~a~~g~-------~~~~~~l~~~m~~~D 71 (526) |++ -..=++-......++.+.+- .+....|. +.|..-++...+-+.+.-...|+ +..+.++ .+.. T Consensus 1 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~----~~~~ 74 (351) T protein:vir:78 1 MSK--RRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKS----FRAS 74 (351) T ss_pred CCC--CCCCCCCCCCCCCchhhhhcccceeEEEEcCCceeecCcchhhhhhhhhccCceecCCCCHHHHHHH----Hhhh Confidence 886 11111111111111111110 01111221 12222244444445555555665 2233333 3468 Q ss_pred HHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecCCeeEEe Q lcl|Aclame:pro 72 AHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPL 151 (526) Q Consensus 72 ~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~~~~ 151 (526) +|..++|..++.-+.+. +.|+..-+.. .|..++ ++.+.+|.+.+|++-+..| .+. T Consensus 75 ~~h~~~l~~k~n~l~~~---~~Pn~~~t~~----------------~f~~~~---~d~ll~Gnay~~~~rn~~G---~~~ 129 (351) T protein:vir:78 75 THHSSALFFKANVLAST---FRPHRWLSRH----------------AFERWA---LDFLTFGNGYLERRRNMVG---GTL 129 (351) T ss_pred HhhhhhhhhhhhHHhhc---ccCCCCCCHH----------------HHHHHH---HHHHhcCCeEEEEEECCCC---CEE Confidence 99999998877766653 4554332210 133333 4566789999999865544 356 Q ss_pred eeeeecCceeEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcC Q lcl|Aclame:pro 152 AFHHRPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYG 231 (526) Q Consensus 152 ~l~~r~~~~f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G 231 (526) .|.+.++.+.+...+.+....+. +......+++...++.+.....+..||.+.+..+......-.....+-..|....+ T Consensus 130 ~L~pl~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~eVihir~~~~~~~~yGl~~~~~a~~si~l~~~a~~~~~~~f~NGa 208 (351) T protein:vir:78 130 RLEPALAKYVRRKADFSGFVYVN-GWQERHEFAPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGS 208 (351) T ss_pred EEEEecCcceEEeeeCCeEEEEe-cCCeEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccC Confidence 88999988887766655443333 33344567777765544444457789999999888888877777777778888878 Q ss_pred CceEEEecC-CCCCHHHHHHHHHHHHHhhc--Ce--EEE-ecCC--ceEEEeecCC-CChHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 232 LPIRLGKYP-PGTADEEKATLLRAVTGLGH--AA--AGI-IPET--MAIDFQQAAQ-GSSEPFLAMMRQSEDAISKAVLG 302 (526) Q Consensus 232 ~P~~vgk~~-~~~~~~e~~~l~~al~~~~~--~~--~~i-ip~~--~~ie~~~a~~-~~~~~~~~li~~~d~~Isk~ilG 302 (526) .|--|.+++ +..++++++++.+++++... ++ .+| .|.| ..++++..+. ..-..|.+.-++-..+|+.+... T Consensus 209 ~pggIl~~~~~~ls~e~~~~lr~~~~~~~G~~N~~~~~v~~~~g~~~g~k~~pls~~~~d~qf~e~k~~~~~eIa~a~~V 288 (351) T protein:vir:78 209 HAGFILYMTDAAQKQDDVDNMRDALKNAKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRV 288 (351) T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHHhcCcccccceeeecCCCCccceeEEEcCCChhHHHHHHHHHHhHHHHHHHhCC Confidence 887777654 46788999999888877522 11 223 3433 2355655442 22345888888889999999876 Q ss_pred hhhhcccccccchhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHH Q lcl|Aclame:pro 303 GTLTSTTSQSGGGAFALGQVHNEVR-HDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMA 381 (526) Q Consensus 303 qtltt~~~~~~~gS~a~~~vh~~v~-~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a 381 (526) +....+..++++++++-.+....++ ..-+.--++.|++ +|. +-+. . .|+|+..+=.+....| T Consensus 289 Pp~llGi~~~~t~~~sn~e~~~~~f~~~~l~P~~~~iee-~n~----------~l~~----~--~~~F~~~~Llr~d~ka 351 (351) T protein:vir:78 289 PPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQARFAE-LND----------WLGD----E--VVRFDDYEIPPAPVAA 351 (351) T ss_pred CHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH-HHh----------hcCc----c--ceecChhhhccccccC Confidence 6544433333334444333222222 1223333333332 221 1111 1 2444433211111112 No 121 >protein:vir:99563 Length: 862 # NCBI annotation: minor head protein-like protein # Family: family:all:297 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039808;genbank:gi:126011058;genbank:GeneID:4818258 Probab=99.10 E-value=2.2e-09 Score=68.03 Aligned_cols=491 Identities=11% Similarity=0.042 Sum_probs=200.7 Q ss_pred CCeeecCCCCccCccccchh--hh---hh------------hh-hhhhhhhhhhh----cccCHHHHHHHHHc-ccC--- Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREP--QT---SR------------LA-GLAKEFAQHPA----KGLTPAKLARILVE-AEQ--- 54 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~--~~---~~------------~~-~~~~~~~~~~~----~~l~~~~~~~~l~~-a~~--- 54 (526) |.+ -.-|.||+++...+. .+ +. +. .+..+-...+. .+..+..+...... ... T Consensus 39 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~Dgl~n~~~~lG~~~~~ 116 (862) T protein:vir:99 39 LAR--TRQNWPVQKEKPNPIIRSVKDFPFVEISDSVNAKSVSGKNFAMDSAVRSAIKAITGFAMDDGGGAPVPIGAEGKQ 116 (862) T ss_pred HHh--hcccCCcccccCCCCCCcccccccccccccccchhhhhhhhcchhhcchhhhhhhhhhhhcchhhhhhccccccc Confidence 444 223777776654321 00 00 00 00000000000 01111111111100 011 Q ss_pred ---------------CCHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCH Q lcl|Aclame:pro 55 ---------------GNLQAQAELFMDMEERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGL 119 (526) Q Consensus 55 ---------------g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~ 119 (526) +.+..| .|+ .+..+.+-++.++++...-+++..|.|.-.++++..+....+.+++.+.++--+ T Consensus 117 s~y~~~~~~~~~~~~~~f~gy-ql~-alY~~~~larkiVd~pAeDatR~g~~I~~~~d~~e~~~e~~~~ie~~~~rL~v~ 194 (862) T protein:vir:99 117 SSYAVPEALQDWYLSQGFIGH-QAC-ALIAQHWLVDKACSLAGEDAIRNGWHLKSLGEGEEIDEESLEKFKAIDVEFKVK 194 (862) T ss_pred cccccchhccccccccCcccH-HHH-HHHHhCchhhhhhhhhhHHHhhCCceEeecCcccccCHHHHHHHHHHHHHhhHH Confidence 111112 333 345579999999999999999999999865443332334445566666665334 Q ss_pred HHHHHHHHHhhhhccee-eeEEEeecCCee------------EEeeeeeecCceeEeccc-----C---CceEEeccCCC Q lcl|Aclame:pro 120 EDLLLDALDGIGHGYSC-IELEWALQGREW------------MPLAFHHRPQSWFQLNPE-----D---QNELRLRDNSP 178 (526) Q Consensus 120 ~~~i~~~lda~~~G~s~-~Ei~w~~~~g~~------------~~~~l~~r~~~~f~~~~~-----~---~~~l~~~~~~~ 178 (526) +.+...+..+.+||-++ +-++=..++..| .++.|...++.|...... + ........-.. T Consensus 195 ~~l~eair~~RLyGga~ililv~~~D~~~LsqPLn~e~I~kG~lkgl~vlDp~w~~p~~v~~~~~Dp~sp~yGkP~~y~I 274 (862) T protein:vir:99 195 ENLIEFNRFKNVFGIRVAIFVVDSEDPDYYEKPFNPDGITPGSYRGISQIDPYWMMPMLTAESTADPSSQFFYEPEFWII 274 (862) T ss_pred HHHHHHHHhcccccceEEEEEecCcCchhhhcCcCcccccccceeEEEEechhhhcccccccccccccccccCCceeeee Confidence 44554555688898544 333211222111 223455555554432110 0 00000000012 Q ss_pred CceeecCCCeEEEeecC------CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCC---CHHHHH Q lcl|Aclame:pro 179 AGEALQPFGWIIHRPRA------RSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGT---ADEEKA 249 (526) Q Consensus 179 ~g~~lp~~k~i~~~~~~------~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~---~~~e~~ 249 (526) .|..+.+.++|++.... ...+.+|.|++..+|....--......=...+.++.+. +.|++.-. +++... T Consensus 275 ~g~~IH~SRliif~g~~vpd~lk~ay~f~G~SvLe~iyd~L~~~d~t~~saa~Ll~ka~l~--v~ktd~l~~l~~ed~l~ 352 (862) T protein:vir:99 275 SGQKYHRSHLIIARGPQPADILKPTYIFGGIPLVQRIYERVYAAERTANEAPLLAMNKRTT--AIHTDTAKAIANEDKFI 352 (862) T ss_pred cCeeeccceeEEecCCCchhhhhccCCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccc--eeechhHhhhccHHHHH Confidence 23446666666554332 24446799999999876655555555556677777754 44553211 112222 Q ss_pred HHHHHHHHhhc-CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHH Q lcl|Aclame:pro 250 TLLRAVTGLGH-AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRH 328 (526) Q Consensus 250 ~l~~al~~~~~-~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~ 328 (526) .=++.+....+ .+.++|..+.+++.++.+=++. ..+++..-.+||-+. +-.+|.--+....|-+|.|+--..++. T Consensus 353 ~r~~~~~~~rdN~Gi~liD~eEe~e~ls~slSGL---~dll~~~~q~IAaas-~IP~tiLfGqspaGlnATGE~D~~nYy 428 (862) T protein:vir:99 353 QRLMFWVRYRDNHAVKVLGTDETMEQFDTSLADF---DAVIMGQYQLVASIA-KTPATKLLGTAPKGFNSTGEFETISYH 428 (862) T ss_pred HHHHHHHhccCcceeEEecCCCceeEEecccCCh---HHHHHHHHHHHHhhh-CCCceeecccCcccccCchHHHHHHHH Confidence 11222333333 4688899999999998652222 345555566788775 333332222222344555665667777 Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHH-------HHHHHHHHHHhCCCcCCHHHHH Q lcl|Aclame:pro 329 DLLASDAR-QLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADIT-------SMAQSIPALVNVGLEIPSAWVY 400 (526) Q Consensus 329 ~~~~ad~~-~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~-------~~a~~~~~l~~~G~~v~~~~~~ 400 (526) +.+++... .+...|++ |+. |+.+-++.. ++ -.|+|..-...+-+ ..+++++++++.|+ ++.+++| T Consensus 429 D~I~s~QE~~L~P~Ler-L~~-li~~~lg~~--~d--~~ieFnpL~~~sekEkAEi~kk~Aea~~~lv~sGv-ispdEvR 501 (862) T protein:vir:99 429 EELESIQEHVYMPFLQR-HYL-ISRLSLGIQ--HE--IDVVMEPVASMTAQQQADLNKTKAEGGKVLIDGGV-ISPDEER 501 (862) T ss_pred HHHHHHHHHHHHHHHHH-HHH-HHHHhcCCC--Cc--ceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHH Confidence 88877763 35555643 443 333333221 11 23555443333333 35567888999996 9999999 Q ss_pred HHh------CCCCCCccchhccc-------------CCCccccccccccccccccc---cccc------ccccccchHHH Q lcl|Aclame:pro 401 DKL------GIPQPAKNEPVLRS-------------AAQPAILSRQHGQRVAALAT---IVGP------RYGDQQALDKA 452 (526) Q Consensus 401 e~~------Glp~~~~~e~~~~~-------------~~~~~~~~~~~~~~~~~~~~---~~~~------~~~~~~~~~~~ 452 (526) +++ |++...+++....+ .......+.. ....++... ...+ .....+..-.. T Consensus 502 ~~L~~~~~~g~~~l~ded~E~d~~~~~e~~~~~e~~g~a~~~ap~d-e~~aga~~~~~e~d~~~~p~~~~~~~g~~~~~t 580 (862) T protein:vir:99 502 NRIRDDKRSGYNRLTKEDAEETPGASPENLAAYQKAGAAQETASAK-ETQAGAAVTTAEGDQPNVQMVPSMKPGQMVGPE 580 (862) T ss_pred HHHHhcCCcCCCCCCcccccccCCCCcccccccccCCccccccccc-ccccccCCccccCCcccccccCCCCCCCccccc Confidence 875 43321111100000 0000000000 000000000 0000 00000000000 Q ss_pred ------HHH---HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH--hHHhhh Q lcl|Aclame:pro 453 ------LAD---LPAKDMQNQANDLLAPLLEAVNRGDSETELLGALAEAFPDMDDSALTDALHRLLFAADTW--GRLHGN 521 (526) Q Consensus 453 ------~~~---~~~~~~~~~~~~~~~~i~~~~~~a~s~ee~~~~L~~l~~~l~~~~l~~~l~~a~~~A~l~--G~~~~~ 521 (526) ... -....+....+-.-.++.+.+ .....+.+....|++.. .++.+ +..++. T Consensus 581 ~~~~a~~p~~~~~~~~~~~~~~e~~~~~~~~~~-------~v~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 643 (862) T protein:vir:99 581 VGITAPMPEDDAPVAGVVAKLAELQQAQMGAVT-------GVLARLVEQLDRMHDRT----------IAEGADIGQYDAS 643 (862) T ss_pred cccccCCCccccccCcccccchhhhcCcchhhc-------chhhhhHHHHHhhhhhh----------hhhhcchhhhccc Confidence 000 000000000000000111000 11111122222222211 11111 110110 Q ss_pred hhccC Q lcl|Aclame:pro 522 LDRID 526 (526) Q Consensus 522 ~e~~d 526 (526) ..+.- T Consensus 644 ~~~~~ 648 (862) T protein:vir:99 644 GRTVK 648 (862) T ss_pred ccccc Confidence 00000 No 122 >protein:vir:4698 Length: 251 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061630;genbank:gi:9635717;genbank:GeneID:1262980 Probab=99.09 E-value=9.8e-11 Score=75.46 Aligned_cols=240 Identities=10% Similarity=0.032 Sum_probs=147.9 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCC-HHHHHHHHHHHHhccHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGN-LQAQAELFMDMEERDAHLFAEMS 79 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~-~~~~~~l~~~m~~~D~~v~s~l~ 79 (526) |+ | +.++.+.+....+.+ .......+..+.. ..+. ... +.. .+-+.|.+|++ T Consensus 1 Mg-l---F~~~~~r~~~~~~~~--~~~~~~~~~~~~~---------------~~~~~v~~-----~~a-l~~~~v~~~i~ 53 (251) T protein:vir:46 1 MG-I---FYKNEKRDLQYNEDD--LQMMVQTLPSFQG---------------TKLRQYKD-----IEA-IRHSDIFTAVM 53 (251) T ss_pred CC-c---cccccccccCCCccc--hhhhhhhhccccC---------------cCcceech-----hhh-hccHHHHHHHH Confidence 87 3 233332221111111 0000000000000 0000 111 011 24678999999 Q ss_pred HHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecC Q lcl|Aclame:pro 80 KRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQ 158 (526) Q Consensus 80 ~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~ 158 (526) .+...|.+++|.+....+.. .+......+..--+......++++.+. +.+.+|.+.++++++..| .|..|.+.++ T Consensus 54 ~ia~~iA~lp~~~~~~~~~~-~~~~~~~ll~~~Pn~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G---~~~~L~~i~~ 129 (251) T protein:vir:46 54 MIASDLARMPIRVTVNGQIN-YSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTG---EPMNLTFRKT 129 (251) T ss_pred HHHHhHhhCceEEeeCcccc-ccchHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCC---cEEEEEEECC Confidence 99999999999998644322 222233333221122223456777666 578999999999875544 4778999999 Q ss_pred ceeEecccCCceEEeccC----C--CCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCC Q lcl|Aclame:pro 159 SWFQLNPEDQNELRLRDN----S--PAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGL 232 (526) Q Consensus 159 ~~f~~~~~~~~~l~~~~~----~--~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~ 232 (526) .+++...+..+.+.++.. . +....+++...|++++.. .+..+|.|.+..+....-......++...+...-+. T Consensus 130 ~~v~v~~~~~g~~~~~~~~~~~~~~g~~~~~~~~diiH~r~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~ 208 (251) T protein:vir:46 130 SEIELKSDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTH 208 (251) T ss_pred ceEEEEECCCCcEEEEEEEeccCCcceeEEECCccEEEecCcC-CCCeeecCHHHHHHHHHHHHHHHHHHHHHHHHccCC Confidence 998877665554443321 1 122467888877776654 455799999999999999999999999999999999 Q ss_pred ceEEEecCCCCC-HHHHHHHHHHHHHhhc--CeEEEecCCceE Q lcl|Aclame:pro 233 PIRLGKYPPGTA-DEEKATLLRAVTGLGH--AAAGIIPETMAI 272 (526) Q Consensus 233 P~~vgk~~~~~~-~~e~~~l~~al~~~~~--~~~~iip~~~~i 272 (526) |--+.+++...+ +++++++.+...++-+ +.++.++.||+= T Consensus 209 p~gil~~~~~l~~~e~~~~~~~~~~~~~~g~~n~g~~~~gm~~ 251 (251) T protein:vir:46 209 AGGILKMKGVLDNKKARDRAREEFPKVLVELNKLGKLSYSMNQ 251 (251) T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHHHhcCcccccccccccCC Confidence 999999987654 4556777777776633 555667778774 No 123 >protein:vir:6058 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878199;genbank:gi:33438898;genbank:GeneID:1457733 Probab=99.09 E-value=8.2e-10 Score=70.41 Aligned_cols=326 Identities=10% Similarity=0.027 Sum_probs=175.6 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhh---hhh-hcccCHHHHHHHHHcccCCCHH----HHHHHHHHHHhccH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFA---QHP-AKGLTPAKLARILVEAEQGNLQ----AQAELFMDMEERDA 72 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~l~~~~~~~~l~~a~~g~~~----~~~~l~~~m~~~D~ 72 (526) |++=.- ++......++..++ +....|. ..| ..+-++-++..+. ..|++- ....|. .+.+..+ T Consensus 1 m~~~~~---~~~~~~~~~~~~~~---~~~~~~~f~~p~~v~~~~~~~~~~~~~---~~~~~~~pp~~~~~la-~~~~a~~ 70 (344) T protein:vir:60 1 MSKKKG---KTLQPAAKKMTASA---PKMEAFTFGEPVPVLDRRDILDYVECI---SNGRWYEPPISFTGLA-KSLRAAV 70 (344) T ss_pred CCcccC---CCCCchHHhhcCCc---CcEEEEEcCCceeecCCcchhHHHHhh---hcCccccCCCCHHHHH-HHHHhhh Confidence 886222 22211111111111 1011111 111 1223333444443 344321 112222 3334688 Q ss_pred HHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecCCeeEEee Q lcl|Aclame:pro 73 HLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPLA 152 (526) Q Consensus 73 ~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~~~~~ 152 (526) |..++|..++.-+.+. +.|+..-+. . .|..++ ++-+.+|.+.+|++++..| .+.. T Consensus 71 ~h~~~i~~k~n~l~~~---~~Pn~~~t~-----~-----------~f~~~~---~d~ll~Gnay~~i~rn~~G---~~~~ 125 (344) T protein:vir:60 71 HHSSPIYVKRNILAST---FIPHPWLSQ-----Q-----------DFSRFV---LDFLVFGNAFLEKRYSTTG---KVIR 125 (344) T ss_pred hhccchhhhhhHHHhh---ccCCCCCCH-----H-----------HHHHHH---HHHHhcCCeEEEEEECCCC---cEEE Confidence 8888888877766652 466543221 0 144443 3556789999999876544 3568 Q ss_pred eeeecCceeEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCC Q lcl|Aclame:pro 153 FHHRPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGL 232 (526) Q Consensus 153 l~~r~~~~f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~ 232 (526) |.+.|+.+.+...+++..+.+. .......+++...++.+.....+..||.+.+..+.-....-.....+-..|.+.-+. T Consensus 126 L~~l~~~~vr~~~~~~~~~~v~-~~~~~~~~~~~eIiHir~~~~~~~~yGlsp~~~a~~si~l~~~a~~~~~~~f~NG~~ 204 (344) T protein:vir:60 126 LETSPAKYTRRGVEEDVYWWVP-SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAH 204 (344) T ss_pred EEEcCcceEEEeecCCeEEEEc-cCCeEEEEcCccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCC Confidence 9999998888776665433333 333445677777655444433567799999998888888877777778888888888 Q ss_pred ceEEEecC-CCCCHHHHHHHHHHHHHhhc-C--eEEEe--cCCc--eEEEeecCC-CChHHHHHHHHHHHHHHHHHHhch Q lcl|Aclame:pro 233 PIRLGKYP-PGTADEEKATLLRAVTGLGH-A--AAGII--PETM--AIDFQQAAQ-GSSEPFLAMMRQSEDAISKAVLGG 303 (526) Q Consensus 233 P~~vgk~~-~~~~~~e~~~l~~al~~~~~-~--~~~ii--p~~~--~ie~~~a~~-~~~~~~~~li~~~d~~Isk~ilGq 303 (526) |--|.+++ +..++++++++.+++++... + -.+++ |.|. .++++..+. ..-..|.+.-++-.++|+.+...+ T Consensus 205 pg~il~~~~~~ls~e~~~~ik~~~~~~~g~~~~r~~~l~~p~g~~~g~~~~pis~~~~d~qf~e~k~~~~~eIa~af~VP 284 (344) T protein:vir:60 205 AGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIP 284 (344) T ss_pred CceEEEecCcCCCHHHHHHHHHHHHHhcCCCCCcceEEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCC Confidence 88887764 56889999999888877532 2 12333 4332 345554432 223458888889999999998766 Q ss_pred hhhcccccccchhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCH Q lcl|Aclame:pro 304 TLTSTTSQSGGGAFALGQVHNEV-RHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADI 377 (526) Q Consensus 304 tltt~~~~~~~gS~a~~~vh~~v-~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl 377 (526) ....+..++++|+++-.+-...+ ...-+.--++.+++ || .|| +.. ..+|.....+..|- T Consensus 285 p~llGi~~~~t~~~~n~e~~~~~f~~~~L~Pl~~~~e~-ln----~~l------g~~----~i~F~~~~l~~~d~ 344 (344) T protein:vir:60 285 FQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-IN----GWL------GQE----VIRFKNYSLDTDNG 344 (344) T ss_pred HHHhcccCCCCCccccHHHHHHHHHHHHHHHHHHHHHH-HH----Hhc------CCc----ccccCccccCCCCC Confidence 54443333334445433333322 22223333333332 33 222 111 12333333333332 No 124 >protein:vir:100328 Length: 346 # NCBI annotation: capsid portal protein Q # Family: family:all:196 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655469;genbank:gi:109289937;genbank:GeneID:4157371 Probab=99.08 E-value=1.5e-09 Score=69.00 Aligned_cols=326 Identities=11% Similarity=-0.017 Sum_probs=170.2 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhh-hhhcccCHHHHHHHHHc-ccCCC-------HHHHHHHHHHHHhcc Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQ-HPAKGLTPAKLARILVE-AEQGN-------LQAQAELFMDMEERD 71 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~l~~-a~~g~-------~~~~~~l~~~m~~~D 71 (526) |++-.-+.. .+.+++.-+.....+.. .|-.-++-..+.+-+.- +..|. +..+.++ .+.. T Consensus 1 m~~~~~~~~--------~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~la~l----~~~~ 68 (346) T protein:vir:10 1 MKKQLRKNL--------TQNDRLQPQAQTEIFSFGDPIPVLDRADILNYLECSAMYEKWYNPPMSFDGLAKS----LRSS 68 (346) T ss_pred CCcccCCCC--------CcccccccccCeEEEecCCcceecCchhHHHHHHHhhcCCceEecCCCHHHHHHH----HHhh Confidence 887322211 11111100011111110 11111121122333332 23443 2233333 3467 Q ss_pred HHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecCCeeEEe Q lcl|Aclame:pro 72 AHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPL 151 (526) Q Consensus 72 ~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~~~~ 151 (526) +|-.+++..++..+..+- . .|+..-+. ..|..+ +++-+.+|.+++|++++..|. +. T Consensus 69 ~~h~~~i~~k~n~l~~l~-~-~Pn~~~t~----------------~~f~~~---~~d~ll~Gnay~~i~r~~~G~---~~ 124 (346) T protein:vir:10 69 THHESAIITKANILLSTC-E-VDSRYLSR----------------RDLSSF---VKDYLVFGNAYFEVVRNRLGQ---VQ 124 (346) T ss_pred hhcchhhhhhhhhHHHHH-h-CCCCCCCH----------------HHHHHH---HHHHHhcCCeEEEEEEcCCCc---EE Confidence 787888877766655431 1 23221110 013333 345577999999998765442 55 Q ss_pred eeeeecCceeEecccCCceEEec-cCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHc Q lcl|Aclame:pro 152 AFHHRPQSWFQLNPEDQNELRLR-DNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIY 230 (526) Q Consensus 152 ~l~~r~~~~f~~~~~~~~~l~~~-~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~ 230 (526) .|.+.++.+.+...+.+...... ...+....+++...++.+.....+..||.+.+..+.-....-.....+...|...- T Consensus 125 ~L~pl~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~dIih~r~~~~~~~~~G~~~~~~a~~si~l~~~a~~~~~~~~~NG 204 (346) T protein:vir:10 125 RIESPLAKYVRKGLEAGQFYYVPQRFDHQEHEFAKGSIYHLLEPDINQDIYGLPQYLSALQSAWLNESATLFRRKYFLNG 204 (346) T ss_pred EEEEecCCceEEEEcCCeEEEEEEccCCeEEEEecccEEEecCCCCCCCeeeccHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 78899988887765544432222 22233456777776555544445678999999999888888888888888999888 Q ss_pred CCceEEEecC-CCCCHHHHHHHHHHHHHhhc--C--eEEEecCC---ceEEEeecCCC-ChHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 231 GLPIRLGKYP-PGTADEEKATLLRAVTGLGH--A--AAGIIPET---MAIDFQQAAQG-SSEPFLAMMRQSEDAISKAVL 301 (526) Q Consensus 231 G~P~~vgk~~-~~~~~~e~~~l~~al~~~~~--~--~~~iip~~---~~ie~~~a~~~-~~~~~~~li~~~d~~Isk~il 301 (526) +.|--|.+++ +..++++++++.+++.+... + ..+|++.| ..+++...+.. .-..|.+.-++-.++|+.+.. T Consensus 205 ~~~~~il~~~d~~l~~e~~~~i~~~~~~~~g~~n~~~~~vl~~~~~~~gi~~~pis~~~~d~qf~e~k~~~~~~I~~af~ 284 (346) T protein:vir:10 205 AHAGFVFYMSDASQKQEDVENIRQQLKQSKGVGNFKNLFVHAPNGKKDGIQIIPIADVSAKDEFFNIKNVSRDDVLAAHR 284 (346) T ss_pred CCCceEEEeCCCCCCHHHHHHHHHHHHHhcCccccCceeEecCCCCccceeEEecCCChhHHHHHHHHHHhHHHHHHHhC Confidence 8887777764 45688889988888876522 1 23344332 23556554422 234588888888999999987 Q ss_pred chhhhcccccccchhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHH Q lcl|Aclame:pro 302 GGTLTSTTSQSGGGAFALGQVHNEVR-HDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITS 379 (526) Q Consensus 302 Gqtltt~~~~~~~gS~a~~~vh~~v~-~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~ 379 (526) .+..-.+..++++|+++-.+....++ ..-+.--++.|++ +|..|... .|+|...+=.+.++ T Consensus 285 VPp~llG~~~~~~~~~s~~e~~~~~f~~~~l~P~~~~iee-~n~~L~~e----------------~i~F~~~~ll~~~~ 346 (346) T protein:vir:10 285 VPPQLMGIIPNNTGGFGNVADAAEVFFITEIEPLQERLKE-FNQWLGQE----------------VIKFKPSKLLQRTQ 346 (346) T ss_pred CCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH-HHhhcccc----------------eeeechhhhcccCC Confidence 66544433333334444333333322 2223334444432 33222111 23443221111111 No 125 >protein:vir:3780 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536820;genbank:gi:17981829;genbank:GeneID:929208 Probab=99.07 E-value=3.3e-10 Score=72.58 Aligned_cols=319 Identities=13% Similarity=0.036 Sum_probs=173.4 Q ss_pred CCeeecCCCCccCccccchhhhh-hhhhhhhh--hhhhhhcccCHHHHHHHHHcc--cCCC-------HHHHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTS-RLAGLAKE--FAQHPAKGLTPAKLARILVEA--EQGN-------LQAQAELFMDME 68 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~l~~~~~~~~l~~a--~~g~-------~~~~~~l~~~m~ 68 (526) |- +...+ ++.. +.++..+. |.. ....|..+.+-+.-. ..|+ +..++++ . T Consensus 1 ~~-----------~~~~~-~~~~~~~~~~~~~~~f~~---~~~~~~~~~~y~~~~~~~~~~~~epp~~~~~la~l----~ 61 (345) T protein:vir:37 1 MK-----------TNVKT-DNKKGIVIAPINDRTFSL---NEISASPALDYVGIGFDENYNCYLPPVNRHALAKL----P 61 (345) T ss_pred CC-----------CCccc-cchhhcccCcceeEEeec---CCcccccchhhhhhhhcCCccccCCCCCHHHHHHH----h Confidence 22 11111 1111 11111111 111 011111111211111 2222 2223333 3 Q ss_pred hccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecCCee Q lcl|Aclame:pro 69 ERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREW 148 (526) Q Consensus 69 ~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~ 148 (526) +..+|-.++|..++.-+.+. +.|+..-+.. .|..++ ++.+.+|.+++|++.+..| T Consensus 62 ~~~~~h~~~i~~k~n~l~~~---~~Pn~~lt~~----------------~f~~~~---~d~ll~Gnay~~~~rn~~G--- 116 (345) T protein:vir:37 62 HQNAQHGGILHSRANMVSSL---YEGGKALSRM----------------DMRALC---LNLIQFGDVGLLKVRNGFG--- 116 (345) T ss_pred hcccccccceeeechHHHhh---ccCCCCCCHH----------------HHHHHH---HHHHhcCCeEEEEEEcCCC--- Confidence 46888888888776666542 4554332210 133333 4556789999999876554 Q ss_pred EEeeeeeecCceeEecccCCceEEeccC----CCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 149 MPLAFHHRPQSWFQLNPEDQNELRLRDN----SPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLA 224 (526) Q Consensus 149 ~~~~l~~r~~~~f~~~~~~~~~l~~~~~----~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~ 224 (526) .+..|.+.++.+.+...+.+..+.++.. .+....+++...++.+.....+..||.+.+..+......-.....+-. T Consensus 117 ~~~~L~pl~~~~vr~~~d~~~~~~~~~~~~~~~g~~~~~~~~dVihir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~ 196 (345) T protein:vir:37 117 QVVRLVPLSSLYLRVRKDGGYSYLMKKSLYDTAQEIYRYDAKDIIFIKLYDPMQQVYGSPDYVGGIQSALLNSDATVFRR 196 (345) T ss_pred cEEEEEEEcCceeEEEEeCCeeEEEEEeEecCCceEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHH Confidence 3567889998887766666554443322 223345777776555544445677999999988888887777777778 Q ss_pred HHHHHcCCceEEEecC-CCCCHHHHHHHHHHHHHhhcC-----eEEEecCC--ceEEEeecCC-CChHHHHHHHHHHHHH Q lcl|Aclame:pro 225 EMLEIYGLPIRLGKYP-PGTADEEKATLLRAVTGLGHA-----AAGIIPET--MAIDFQQAAQ-GSSEPFLAMMRQSEDA 295 (526) Q Consensus 225 ~f~E~~G~P~~vgk~~-~~~~~~e~~~l~~al~~~~~~-----~~~iip~~--~~ie~~~a~~-~~~~~~~~li~~~d~~ 295 (526) .|.+..+.|--|.+++ +..++++++++.+++++.... -.+.+|.| ..+++...+. ..-..|.+.-++...+ T Consensus 197 ~~f~NG~~p~~Il~~~d~~l~~e~~~~lk~~~~~~~g~~n~~~~~i~~p~g~~~G~~~~pls~~~~d~qf~e~k~~~~~d 276 (345) T protein:vir:37 197 RYFSNGAHMGFILYSTDPDLTEEMEEEIARKISESKGVGNFRSMFVNIANGHPDGLKVIPIGDTGTKDEFANIKNISAQD 276 (345) T ss_pred HHHhccCCcceEEEecCCCCCHHHHHHHHHHHHHhcCcccccceEEEcCCCcccceEEEEccCChhHHHHHHHHHHhHHH Confidence 8887778887777764 567889999998888775221 12334432 2244444332 2334588888899999 Q ss_pred HHHHHhchhhhcccccccchhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccc Q lcl|Aclame:pro 296 ISKAVLGGTLTSTTSQSGGGAFALGQVHNEV-RHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQ 374 (526) Q Consensus 296 Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v-~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~ 374 (526) |+.+...+.--.+..++++++++-.+....+ ...-+.-.++.|++.+|+.+ . +++. ..++|+.. T Consensus 277 Ia~a~~VPp~llGi~~~~~~~~~~~e~~~~~f~~~~l~P~~~~ie~~ln~~~-----~--~~~~------~~i~F~~~-- 341 (345) T protein:vir:37 277 VLTAHRFPAGLSGIIPTNTGGLGDPLKYREVYHYDEVMPLQEIIAETINQDP-----E--IKNL------LKIKFREQ-- 341 (345) T ss_pred HHHHhCCCHHHhCccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----c--CCCc------ceEEecch-- Confidence 9999866654433223334445444444333 33555666777777776521 1 1211 24555432 Q ss_pred cCHHH Q lcl|Aclame:pro 375 ADITS 379 (526) Q Consensus 375 edl~~ 379 (526) ++++ T Consensus 342 -~L~~ 345 (345) T protein:vir:37 342 -NFAK 345 (345) T ss_pred -hhcC Confidence 2333 No 126 >protein:vir:104338 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398967;genbank:gi:81343951;genbank:GeneID:3778870 Probab=99.06 E-value=3.4e-09 Score=67.00 Aligned_cols=379 Identities=13% Similarity=0.038 Sum_probs=180.8 Q ss_pred hhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCceEecCCCCCHH Q lcl|Aclame:pro 22 TSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSKRKRAILGLDWAVEPPRNASAA 101 (526) Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~ 101 (526) ...+-+.+..+. .|-++.+. .....-..+..+ +.+.++.+-++.++++.-.-.++..|+|+ +++ .+ T Consensus 1 ~~~~D~~~n~~~----gg~~~~~~------~~~~~~~~~~~l-~a~Y~~~~l~~~~Vd~~aed~~r~g~~i~--~~~-~~ 66 (422) T protein:vir:10 1 MVKTDSYANIFL----GGSDGSEI------YGSLQNQAPTIL-ASLYADNALVRRIIDTIPETALAAGFHID--GID-DE 66 (422) T ss_pred CccchhhHHHHc----CCCCCccc------cCcccccCHHHH-HHHHHhChhhHHHHhhhhHHHhcCCcccc--CCC-HH Confidence 000001111110 01111110 000000112222 23445799999999999888899899986 221 11 Q ss_pred HHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecCCe--------eEEeeeeeecCceeEecccC------ Q lcl|Aclame:pro 102 EKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGRE--------WMPLAFHHRPQSWFQLNPED------ 167 (526) Q Consensus 102 ~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~--------~~~~~l~~r~~~~f~~~~~~------ 167 (526) .+ ++..+.++.-+..+...+-.+.+||++++=+.=. ++.. -.++.+...++.+......+ T Consensus 67 -~~----~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~v~-d~~~~~~Pl~~~g~~~~l~v~d~~~i~~~~~~~dp~s~ 140 (422) T protein:vir:10 67 -PA----FWSRWDDLEMTQNINDAWSWARLFGGAAIVAIVK-DNRALTSPVREGAELETVRVYDRTQVKVQTREENPRNA 140 (422) T ss_pred -HH----HHHHHHHhhHHHHHHHHHHhhccccceEEEEEec-CCCCccccccccCceeeEEeeccccccchhcccCcccc Confidence 12 2333444433455555556799999997766431 2111 12335555555554322110 Q ss_pred --Cce--EEecc-CCCCceeecCCCeEEEeec------CCCCccccchhHH-HHHHHHHHHHHHHHHHHHHHHHcCCceE Q lcl|Aclame:pro 168 --QNE--LRLRD-NSPAGEALQPFGWIIHRPR------ARSGYVARSGLFR-VLAWPYLFRHYATSDLAEMLEIYGLPIR 235 (526) Q Consensus 168 --~~~--l~~~~-~~~~g~~lp~~k~i~~~~~------~~~g~p~g~gLl~-~~~~~~~fK~~~~~~w~~f~E~~G~P~~ 235 (526) +.. +.... ....+..+.+.+++++... ....+.||.|++. .||....--.....--+..+.++.+. T Consensus 141 ~fg~P~~y~v~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~~~~~~-- 218 (422) T protein:vir:10 141 RFGEPLTYRITTNESDMFYDVHYSRIHIIDGERIPNVMRRQNDGWGRSVLSSDILDSIKDYTNCERLATQLLKRKQQA-- 218 (422) T ss_pred ccCcceEEEEecCCCCcceeeccceeEEeCCCCchhhhcccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc-- Confidence 111 11111 1122356777777766432 2456678999775 47765555555555556677777755 Q ss_pred EEecCC-------CCC-HHHHHHHHHHHHHhhc-CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhh Q lcl|Aclame:pro 236 LGKYPP-------GTA-DEEKATLLRAVTGLGH-AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLT 306 (526) Q Consensus 236 vgk~~~-------~~~-~~e~~~l~~al~~~~~-~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtlt 306 (526) +.|++. +.. ...+.++.......+. ++.+++..+.+++.++.+=++ ...+++..-.+||.+.- -.+| T Consensus 219 v~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e~~~~~lsg---l~~~~~~~~~~iaaa~~-IP~t 294 (422) T protein:vir:10 219 VWKAKGLAELCDDSEGFGAARLRLAQVDNNSGVGQAIGIDAESEEYSVLNSDIGG---IDAFLDKKFDRIVALSG-IHEI 294 (422) T ss_pred cccchhHHHhcCCccchHHHHHHHHHHHHhcCCccceeEecCCcceEEEecccCC---hHHHHHHHHHHHHhhhC-CCee Confidence 344431 111 1112222222222233 345666778899999764332 35566667778887753 3333 Q ss_pred cccccccchhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCCCcccceeEEecC------ccccCH-H Q lcl|Aclame:pro 307 STTSQSGGGAFALGQVHNEVRHDLLASDARQ-LAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDL------REQADI-T 378 (526) Q Consensus 307 t~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~-i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~------~e~edl-~ 378 (526) .--++..+|-.|.|+-.....-+.+++.+.. +...+ +.|++.++. + . . -.|+|.. .+..+. + T Consensus 295 ~L~G~s~~Glnatgd~d~~~yyd~i~~~Qe~~l~p~l-~~l~~~i~~-s---~-~----~~~~f~pL~~~sekekaei~~ 364 (422) T protein:vir:10 295 ILKNKNVGGVSSSQNTALETFHKLVDRKRNAELLPIL-EFLIPFIVN-A---E-E----WSVEFNPLAQESSKDKAEILE 364 (422) T ss_pred eeccCCcccccccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcc-c---C-C----cEEEeCCCCCCCHHHHHHHHH Confidence 2223333444456666677788888887754 44444 345555432 1 1 1 1233332 222222 4 Q ss_pred HHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 379 SMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQ 447 (526) Q Consensus 379 ~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (526) ..|++++++++.|+ ++.+++|+.+.=..+..+ + ...-.+.... ..... ..+...+.++ T Consensus 365 ~~a~a~~~~~~~g~-i~~~e~r~~L~~~~~~~~--~-~~~~~~~~~~---~~~~~----~~~~~~~~~d 422 (422) T protein:vir:10 365 KNVNSIAALIAAGA-MDIDEARDTLRTIAPEVK--I-NDGSVETEVT---ISETS----NDPLEVPTDD 422 (422) T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHhhhhccccc--C-CCCCCccccc---hhhcC----CCCCCCCCCC Confidence 67788899999997 999999988721111000 0 0000000000 00000 0000111111 No 127 >protein:vir:93747 Length: 472 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240454;genbank:gi:66396119;genbank:GeneID:5133516 Probab=99.05 E-value=3.7e-09 Score=66.79 Aligned_cols=412 Identities=12% Similarity=0.046 Sum_probs=184.1 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCC--H-HHHHHHH----HHHH----- Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGN--L-QAQAELF----MDME----- 68 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~--~-~~~~~l~----~~m~----- 68 (526) |....+-.-.-+.... ....+.. .+.+-+..|..+. .++.... .--.|. + .+..... .+.. T Consensus 5 ~~~~~~~~~~~~~~~~-~~~~~~~--~i~~~i~~~~~~~---~~~~~~~-~YY~g~~~i~~~~~~~~~~~~~~~~~~~~r 77 (472) T protein:vir:93 5 QPTQTEIFDAIVRTNN-KPETLEE--MIVRYIKQHLEKL---PEISIGQ-EYYEQRPDIVKEPKPVDATGAVDPLKPDDR 77 (472) T ss_pred CCcchhhhhceeeecC-chhhHHH--HHHHHHHHHHHHH---HHHHHHH-HHhccccccccccchhhccccccccccccc Confidence 2211111100000000 0001111 0111111111100 1111100 000111 0 0000000 0000 Q ss_pred hccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCe Q lcl|Aclame:pro 69 ERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGRE 147 (526) Q Consensus 69 ~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~ 147 (526) ...+...-++.+...-+.+.+..+... ++...++++.++.+ +|++.+.++. ++.-||.+ .+++|...+|. T Consensus 78 i~~n~~~~ivd~~~~~l~g~~~~~~~~------d~~~~~~l~~~~~n--~~~~~~~~~~~~~~~~G~~-~~~v~~d~d~~ 148 (472) T protein:vir:93 78 MITNFHANLVDQKVSYIVGKPIAFKHT------DDEVVKRIDEVLGN--RFDDKLHSVLTGASNKGIE-WLHPYLDEEGE 148 (472) T ss_pred cccchHHHHHHHHhhhhcccCeeeccC------ChHHHHHHHHHHhc--cHHHHHHHHHHHHhhcCeE-EEEEEECCCCc Confidence 013455555666667777777777532 23456778887754 4777777665 68889985 56777655555 Q ss_pred eEEeeeeeecCceeE--eccc-CC-ce--EEe-ccCCCCceeec---------------------------------CCC Q lcl|Aclame:pro 148 WMPLAFHHRPQSWFQ--LNPE-DQ-NE--LRL-RDNSPAGEALQ---------------------------------PFG 187 (526) Q Consensus 148 ~~~~~l~~r~~~~f~--~~~~-~~-~~--l~~-~~~~~~g~~lp---------------------------------~~k 187 (526) ..+ ...+|+.+. |+.. .+ .. +++ .........+. ++. T Consensus 149 ~~i---~~~~p~~~~~i~d~~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (472) T protein:vir:93 149 FKL---FRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWG 225 (472) T ss_pred eEE---EEEcccceEEEEcCCCCCceEEEEEEEEeecceeEEEEecCeEEEEEEecCeeeecccccccccccccccCCCC Confidence 433 233332211 1111 01 00 000 00000000110 111 Q ss_pred eEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHhhcCeEEEec Q lcl|Aclame:pro 188 WIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGHAAAGIIP 267 (526) Q Consensus 188 ~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~~~~~iip 267 (526) .+-..+- ..|++|.|.+..+....=--...+..++.-++.|..|+++++-.... +..... ..+....++.++ T Consensus 226 ~vPvv~~--~nn~~g~s~~e~v~~liDa~~~~~s~~~~~~~~~~~~~~~~~g~~~~---~~~~~~---~~~~~~~~~~~~ 297 (472) T protein:vir:93 226 KIPFIPF--KNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLTNYDDQ---ELPEFK---RLLRYYGAIKVS 297 (472) T ss_pred CcceEEe--cCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeEeecCCcc---cchhhH---HHHhhccccccC Confidence 1000000 23678999998865544455567788888889999999998743322 222222 223445566679 Q ss_pred CCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 268 ETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLL 347 (526) Q Consensus 268 ~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li 347 (526) .+.+++++... .+...++.+++.+.+.|...-....++.+...++.+.-|+ +....-....+..-.+.+...+. +++ T Consensus 298 ~~~~~~~l~~~-~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al-~~~~~~l~~ka~~~~~~~~~~l~-~~~ 374 (472) T protein:vir:93 298 DNGGVDTIQVE-VPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVAL-EFLYTNLNLKADKLARKAKVAIQ-ELL 374 (472) T ss_pred CCCcceeEeec-CCHHHHHHHHHHHHHHHHHHhCCCCCCccccccCchHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHH Confidence 99999998743 3456788999999998888765554444322111111121 11111222334444556666663 466 Q ss_pred HHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCC-CCCCccchhcccCC--Ccccc Q lcl|Aclame:pro 348 WPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGI-PQPAKNEPVLRSAA--QPAIL 424 (526) Q Consensus 348 ~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Gl-p~~~~~e~~~~~~~--~~~~~ 424 (526) +.++.+..-.. . .....+.|....+.|..+.++.+.+++ |+ +|.+.+.+.++. +.+...-+-+.... ..... T Consensus 375 ~li~~~~~~~~-~-~~~i~v~f~~~~p~~~~~~~~~~~k~~--gi-is~et~l~~l~~~~d~~~E~~ri~~E~~~~~~~~ 449 (472) T protein:vir:93 375 WFVFEHFDIKG-E-HKDVDISFNYNKVANTELQVQTAQQSM--GI-VSHETVLENHPFVEDLQAELERIEQEQMEYNKQL 449 (472) T ss_pred HHHHHHhCCCc-c-cceeeEEeCCCCCCCHHHHHHHHHHHh--cc-CchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhc Confidence 66666542211 1 122457788888899999999999985 76 898888888864 33221100000000 00000 Q ss_pred ccccccccccccccccccccccc Q lcl|Aclame:pro 425 SRQHGQRVAALATIVGPRYGDQQ 447 (526) Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~ 447 (526) .......+........+....++ T Consensus 450 ~~~~~~~~d~~~~~~~~~~~~~e 472 (472) T protein:vir:93 450 PNLDDGGADGAQQQERSNNKESE 472 (472) T ss_pred cCcCcccCCCCCCCCCCCcccCC Confidence 00000000000000000000111 No 128 >protein:vir:78749 Length: 337 # NCBI annotation: putative portal protein # Family: family:all:196 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285643;genbank:gi:148727149;genbank:GeneID:5220095 Probab=99.04 E-value=2.3e-09 Score=67.91 Aligned_cols=316 Identities=11% Similarity=0.027 Sum_probs=175.9 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhh-hhhcccCHHHHHHHHHcccC--CC-------HHHHHHHHHHHHhc Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQ-HPAKGLTPAKLARILVEAEQ--GN-------LQAQAELFMDMEER 70 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~l~~a~~--g~-------~~~~~~l~~~m~~~ 70 (526) |++-.. +| ..+++.++ ...|.. .|..-++-..+-+.+.-..+ |+ +..+.+++ +. T Consensus 1 m~~~~~---~~----~~~~~~~~-----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~La~l~----~~ 64 (337) T protein:vir:78 1 MTKRQQ---QP----AQAAASSP-----RPSVVFSMPEAIDPTAWMTDYTGVFYNPYGEYYQPPIDRKGLAKVA----RA 64 (337) T ss_pred CCCccc---Cc----ccccccCc-----eeEEEecCcccccCcchhHhhhhhhhccCcceecCCCCHHHHHHHh----hc Confidence 775111 11 11111111 011111 11111221222223222222 32 33344444 46 Q ss_pred cHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecCCeeEE Q lcl|Aclame:pro 71 DAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMP 150 (526) Q Consensus 71 D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~~~ 150 (526) .+|-.++|..|...+.+. ..+. . + .|..++ ++-+.+|.+.+|++++..| .+ T Consensus 65 ~~~h~~~L~~k~N~~~~~---f~~~----~------~----------~~~~~~---~d~ll~GNay~~~~rn~~G---~~ 115 (337) T protein:vir:78 65 NAHHGAILMARRNMVAGR---FTNQ----R------A----------TITAFV---HNYLQFGDGGLLKLRNSFG---QV 115 (337) T ss_pred chhhhhHHHhhhcccccc---CcCc----H------H----------HHHHHH---HHHHhhCCeEEEEEECCCC---cE Confidence 888899988887655441 1211 0 1 134444 3556789999999986544 36 Q ss_pred eeeeeecCceeEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHc Q lcl|Aclame:pro 151 LAFHHRPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIY 230 (526) Q Consensus 151 ~~l~~r~~~~f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~ 230 (526) ..|.+.++.+.+...+++..+. ..+.....+++...++.+.....+..||.+.+..+.-....-.....+-..|...- T Consensus 116 ~~L~pl~~~~v~~~~d~~~~~~--~~~~~~~~~~~~eIiHik~~~~~~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~NG 193 (337) T protein:vir:78 116 VGLHPLSSVYLRRREDGCFVYL--QQGKPNLIYRPDDVIWLAQYDPEQQVYGMPDYLGGLQSALLNQDATLFRRRYFLNG 193 (337) T ss_pred EEEEEeCCceeEeeeCCeEEEE--EcCCceEEECCccEEEECCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 7899999988887766554333 33344556777776544444435677999999988888888877787888888888 Q ss_pred CCceEEEecC-CCCCHHHHHHHHHHHHHhhc--C---eEEEecCCc--eEEEeecCC-CChHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 231 GLPIRLGKYP-PGTADEEKATLLRAVTGLGH--A---AAGIIPETM--AIDFQQAAQ-GSSEPFLAMMRQSEDAISKAVL 301 (526) Q Consensus 231 G~P~~vgk~~-~~~~~~e~~~l~~al~~~~~--~---~~~iip~~~--~ie~~~a~~-~~~~~~~~li~~~d~~Isk~il 301 (526) +.|--|.+++ +..++++++++.+.+++... + -.+.+|.|. .++++..+. ..-..|.+.-++-..+|+.+.. T Consensus 194 a~p~~il~~~~~~l~~e~~~~lk~~~~~~~G~~n~~~~~v~~~~g~~~Gi~~~pis~~~~d~qfle~k~~s~~eIa~a~~ 273 (337) T protein:vir:78 194 AHMGFIFYATDPNMDDDTEEEMKEMIANSKGVGNFRSMFVNIPDGKPDGIKLIPVGDIATKDEFAAIKGITAQDVLTAHR 273 (337) T ss_pred CCCceeEEcCCCCCCHHHHHHHHHHHHHhcCcccccceEEEcCCCCccceeEEEcCCChhHHHHHHHHHHhHHHHHHHhC Confidence 8887777755 45788889999888877532 1 123334432 355655432 2334588888888999999986 Q ss_pred chhhhccc-ccccchhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCH Q lcl|Aclame:pro 302 GGTLTSTT-SQSGGGAFALGQVHNEV-RHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADI 377 (526) Q Consensus 302 Gqtltt~~-~~~~~gS~a~~~vh~~v-~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl 377 (526) .+.--.+. .++.+|+++-.+-...+ ...-+.--++.|+..+|+.+++.... +.|+....+-+ T Consensus 274 VPp~llGi~~~~~~~~~~n~e~~~~~f~~~~L~P~~~~ie~~~n~~ll~~~~~--------------~~f~~~~~~~~ 337 (337) T protein:vir:78 274 YPPALAGIIPTNGGGGLGDPEKYDATYARNEVLPLCELVQDAINSAGLPRALW--------------VTFRETIGAAV 337 (337) T ss_pred CCHHHcccccCCCcCccccHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhc--------------eeccccccccC Confidence 66432221 11223444433333333 44666677778888777655432211 22332222222 No 129 >protein:vir:79647 Length: 435 # NCBI annotation: PorT # Family: family:all:297 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285520;genbank:gi:148734503;genbank:GeneID:5220005 Probab=99.03 E-value=4.8e-09 Score=66.18 Aligned_cols=386 Identities=12% Similarity=0.010 Sum_probs=183.6 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+-+--..-+|+.+.. +....+... .|.... ....+....+.. +..|..+.+-++.++++ T Consensus 1 ~~~~m~~~~~~~~~~D----------~~~~~~~~~--~g~~~~-------~~~~~~~~~~~~-l~~~Y~~~~l~~~~Vd~ 60 (435) T protein:vir:79 1 MGVFMSDKVKAITKED----------GYNEIFGSK--DGTFRP-------NAFYMQRAAFKA-LSQFYEEDGMARRIVDV 60 (435) T ss_pred CCcccccccccchhhc----------chhhhhccc--cccccc-------CcccCCcCCHHH-HHHHHhcCchhhhhhcc Confidence 3322222222222111 111111000 000000 000010011222 23344578889999999 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecCCe--------eEEee Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGRE--------WMPLA 152 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~--------~~~~~ 152 (526) .-.-.++..|.|+-. . +.++ ++..+.++.-+..+...+-.+.+||++.+=+.=. ++.. -.++. T Consensus 61 ~aed~~r~g~~i~g~--~--~~~~----~~~~~~~l~~~~~l~~a~~~~rl~G~~~i~i~~~-d~~~~~~Pl~~~g~i~~ 131 (435) T protein:vir:79 61 IPEEMVTPGFKVDGV--K--NEKS----FKSRWDELRLNAKIIDALSWSRLFGGSAILAVVA-DNKMLKSPVKPGAQLED 131 (435) T ss_pred chHHhhcCCceecCC--C--hHHH----HHHHHHHhhHHHHHHHHHHhhhccccEEEEEEec-CCCCcccccccCCceee Confidence 888888888888622 1 1122 3334444433455555556799999987665421 2111 12335 Q ss_pred eeeecCceeEecccC--------Cce--EEec-cCCCCceeecCCCeEEEee------cCCCCccccchhH-HHHHHHHH Q lcl|Aclame:pro 153 FHHRPQSWFQLNPED--------QNE--LRLR-DNSPAGEALQPFGWIIHRP------RARSGYVARSGLF-RVLAWPYL 214 (526) Q Consensus 153 l~~r~~~~f~~~~~~--------~~~--l~~~-~~~~~g~~lp~~k~i~~~~------~~~~g~p~g~gLl-~~~~~~~~ 214 (526) |...++.|+.....+ +.. +... .++..+..+.+.+.+++.. ....++++|.+.| +.+|.... T Consensus 132 i~v~d~~~i~~~~~~~dp~sp~fg~P~~y~v~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~e~~~~~l~ 211 (435) T protein:vir:79 132 IRVYDRYQITIHERETNARSVRYGEPKLYKISPGGDIPEFFVHYSRICIIDGERVSNEKRRQNDGWGASILNKRLIEAIV 211 (435) T ss_pred EEeechhhccchhhccCCcccccCcceEEEEecCCCCCceEEcceeEEEecCCcchhhhccccCcccchHHHHHHHHHHH Confidence 555555554322111 011 1111 1222345677777776642 2346788899955 78987666 Q ss_pred HHHHHHHHHHHHHHHcCCceEEEecCC-------CC-CHHHHHHHHHHHHHhhc-CeEEEecCCceEEEeecCCCChHHH Q lcl|Aclame:pro 215 FRHYATSDLAEMLEIYGLPIRLGKYPP-------GT-ADEEKATLLRAVTGLGH-AAAGIIPETMAIDFQQAAQGSSEPF 285 (526) Q Consensus 215 fK~~~~~~w~~f~E~~G~P~~vgk~~~-------~~-~~~e~~~l~~al~~~~~-~~~~iip~~~~ie~~~a~~~~~~~~ 285 (526) --.....--+..+.++.+.+ .|++. +. ..+.+.++......... ++.+++..+.+++.++.+=++ . T Consensus 212 ~~~~~~~~~~~l~~~~~~~v--~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~i~~~~e~~e~~~~~lsg---l 286 (435) T protein:vir:79 212 DYNYCQELATQLLRRKQQAV--WKARDLALMCDDEEGRYAARLRLAQVDDESGVGKAIGIDATDEEYEVLNSDVSG---V 286 (435) T ss_pred HHHHHHHHHHHHHHHhcCcc--ccchhHHHhhcCccchHHHHHHHHHHHHhcCCCCceeEecCCcceEEEecccCC---H Confidence 65666666677777877654 34321 11 11112222222222333 345566667789998754322 3 Q ss_pred HHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccce Q lcl|Aclame:pro 286 LAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAP 365 (526) Q Consensus 286 ~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p 365 (526) ..+++..-.+||.+.--+ +|.--++..+|-.|.|+-.....-+.+++.+.....-+.+.|++.++. + ++ - T Consensus 287 ~~~~~~~~~~iaaa~~IP-~t~L~G~s~~glnstgd~d~~~yyd~i~~~Qe~~l~p~l~~l~~li~~-s------~d--~ 356 (435) T protein:vir:79 287 PEFLQEKIDRIVALTGIH-EIIIKNKNTGGVSASQNTALETFYKLIDRKRVEDYKPILEFLLPFMIS-E------TE--W 356 (435) T ss_pred HHHHHHHHHHHHhhhCCC-eeeeccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C------CC--C Confidence 556777777888875333 332223333344455666667777888877655433333334444332 1 11 1 Q ss_pred eEEecCccccC------H-HHHHHHHHHHHhCCCcCCHHHHHHHh-C-CCCCCccchhcccCCC-----ccccccccccc Q lcl|Aclame:pro 366 RLVFDLREQAD------I-TSMAQSIPALVNVGLEIPSAWVYDKL-G-IPQPAKNEPVLRSAAQ-----PAILSRQHGQR 431 (526) Q Consensus 366 ~~~~~~~e~ed------l-~~~a~~~~~l~~~G~~v~~~~~~e~~-G-lp~~~~~e~~~~~~~~-----~~~~~~~~~~~ 431 (526) .|+|..-...+ . +..+++++++++.|+ ++.+++|+.+ . .+.-.-.++....-+. +.......+.+ T Consensus 357 ~~~f~pL~~~sekEkAei~~~~a~a~~~~~~~g~-i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~d~~~~~~~e~g~~~ 435 (435) T protein:vir:79 357 SIEFEPLSVPSDKDKAEIMAKNVESVVKLKAEQA-INLKETRDTLRSICPDLKIMDNDNIELPEPEDLDPEPGQEGGLNK 435 (435) T ss_pred eEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhccccCCCCcccccCCccccCCCCCCCCCCCCC Confidence 34444322222 2 456778888899997 8999999877 1 2111111111000000 00000000000 No 130 >protein:vir:105889 Length: 474 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004371;genbank:gi:122891826;genbank:GeneID:4712360 Probab=98.98 E-value=7.5e-09 Score=65.12 Aligned_cols=395 Identities=10% Similarity=0.029 Sum_probs=186.6 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHH------------- Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDM------------- 67 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m------------- 67 (526) |-++++. ++-+ .+|++-+...++... ....++..+++.. T Consensus 3 ~~~~~~~----~~~~-----------------------~~~~e~i~~~i~~~~-~~~~r~~~~~~~y~~~~~~~~~~~~~ 54 (474) T protein:vir:10 3 LYKLIDD----IEAQ-----------------------GILPKHIEALIESHK-DDRERMVNLYNRYKTHIDYVPIFKRR 54 (474) T ss_pred hHHHHhh----cccc-----------------------CCCHHHHHHHHHHhh-hhhHHHHHHHHHHhhhcchhhhhcch Confidence 2222221 1111 122222122111110 0111111000000 Q ss_pred -----------------------HhccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHH Q lcl|Aclame:pro 68 -----------------------EERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLL 124 (526) Q Consensus 68 -----------------------~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~ 124 (526) .-..+...-.+.+...-+.+.+..+....+. ..++++.+++.+++... .|+.... T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~yl~g~pv~~~~~~~~-~~~e~~~~~l~~~~~~n-~~~~~~~ 132 (474) T protein:vir:10 55 PIEEKEDFETGGNVRRLDVSVNNKLNNSFDSEIVDTRVGYLHGVPVTYDLDENA-EKNEKLKKFITNFAIRN-SVDDEDS 132 (474) T ss_pred hhhhhhhhhhcccccccccCcccccccchHHHHHHhHhhheeccceeEeeCCCC-cchHHHHHHHHHHHhhc-CHhHHHH Confidence 0014455556666667777888777754332 34556778888888765 4677666 Q ss_pred HHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCcee-EecccC----------------------------CceEEec Q lcl|Aclame:pro 125 DAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQSWF-QLNPED----------------------------QNELRLR 174 (526) Q Consensus 125 ~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f-~~~~~~----------------------------~~~l~~~ 174 (526) .+. ++.-||.+ .+++|...+|.+....+.+.. .| .|+... .....+. T Consensus 133 ~~~~~~~~~G~a-~~~~~~d~~~~~~~~~i~p~~--~~~v~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 209 (474) T protein:vir:10 133 EIGKMAAICGYG-ARLAYIDTNGDIRIKNIDPYN--VIFVGDNILEPTYSLRYFYEKDDDNGTDYVYAEFYDNAYYYVFR 209 (474) T ss_pred HHHHHHhhcCeE-EEEEEeCCCCeeEEEEEcccc--eEEEEcCCCceEEEEEEEEEeeCCCceEEEEEEEEcCceEEEEe Confidence 655 68889974 567776555654433222211 11 111000 0011111 Q ss_pred cCCCCc-e----eecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHH Q lcl|Aclame:pro 175 DNSPAG-E----ALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKA 249 (526) Q Consensus 175 ~~~~~g-~----~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~ 249 (526) ..+..+ . .-.+.+.+-..+- ..++.|.|.+..+....=-=...++..+..++.|..|+++.+-- +.+++... T Consensus 210 ~~~~~~~~~~~~~~~~~g~vPvv~~--~n~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~i~g~-~~~~~~~~ 286 (474) T protein:vir:10 210 GEGIDALQEVGRYEHLFDYNPLFGV--PNNKEMIGDAEKVIHLIDAYDLTMSDASSEISQTRLAYLVLRGM-GMSEEMIQ 286 (474) T ss_pred ecCCCcccccccccCCCCccceEEe--cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhccC-CCCchhhh Confidence 111110 0 0112222211111 25778999998876655555667888888999999998887532 22232222 Q ss_pred HHHHHHHHhhc-CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHH Q lcl|Aclame:pro 250 TLLRAVTGLGH-AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRH 328 (526) Q Consensus 250 ~l~~al~~~~~-~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~ 328 (526) .+.. ....+.+.+.++++++.. .+...++..++.+.+.|...-.+..++.+...|+.+.-|+ +....-.. T Consensus 287 -------~~~~~~~i~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al-~~~~~~l~ 357 (474) T protein:vir:10 287 -------ETQKSGAFELFDKDMDVKYLTKD-VNDTMIENHLDRIEKNIMRFAKSVNFNSDEFNGNVPIIGM-KLKLMALE 357 (474) T ss_pred -------hhhhcceeEecCCCCceeEEecc-CCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHH-HHHHHHHH Confidence 2222 334455888899999754 3456789999999999988755554443322111111111 11111122 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cC--CCCCCc-ccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhC Q lcl|Aclame:pro 329 DLLASDARQLAATLSRDLLWPLLVL-NR--PGSPDV-RRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLG 404 (526) Q Consensus 329 ~~~~ad~~~i~~~ln~~li~~l~~~-Nf--~~~~~~-~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~G 404 (526) ..+..-.+.+...+. ++++.++.+ +. .+..+. -.-.++.|...-+.|..+.++.+.+++ |+ +|.+.+.+.++ T Consensus 358 ~k~~~~~~~~~~~l~-~~~~li~~~l~~~~~~~~~~~~~~i~~~f~~~~p~d~~e~a~~~~kl~--g~-iS~et~~~~l~ 433 (474) T protein:vir:10 358 NKCMTFERKMTAMLR-YQFKVILSALKRKGYNLDDDSYLNLIFKFTRNIPVNKLEESQVLINLK--GQ-VSERTRLGQSQ 433 (474) T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCCccccccceEEeCCCCCCCHHHHHHHHHHHh--cc-CchHHHHHhCC Confidence 223333445555553 355555432 22 111111 123567888888999999999999985 66 89999999987 Q ss_pred C-CCCCccchhcccCCCcccccccccccccccccccccccccccchH Q lcl|Aclame:pro 405 I-PQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALD 450 (526) Q Consensus 405 l-p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (526) + +.+...-+-+..... ................... ..+ .+ T Consensus 434 ~v~d~~~E~eri~~E~~--e~~~~~~~~~~~~~~~~~~--~~~--s~ 474 (474) T protein:vir:10 434 LVDDVDYELDEMEKESL--EFNDKLPDIDEGDANDKSQ--NNQ--SE 474 (474) T ss_pred CCCCHHHHHHHHHHHHH--HHHhhcccccCCCcCCCCc--ccc--CC Confidence 5 332211000000000 0000000000000000000 000 00 No 131 >protein:vir:94101 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240229;genbank:gi:66395892;genbank:GeneID:5133270 Probab=98.98 E-value=7.5e-09 Score=65.12 Aligned_cols=395 Identities=10% Similarity=0.029 Sum_probs=186.6 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHH------------- Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDM------------- 67 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m------------- 67 (526) |-++++. ++-+ .+|++-+...++... ....++..+++.. T Consensus 3 ~~~~~~~----~~~~-----------------------~~~~e~i~~~i~~~~-~~~~r~~~~~~~y~~~~~~~~~~~~~ 54 (474) T protein:vir:94 3 LYKLIDD----IEAQ-----------------------GILPKHIEALIESHK-DDRERMVNLYNRYKTHIDYVPIFKRR 54 (474) T ss_pred hHHHHhh----cccc-----------------------CCCHHHHHHHHHHhh-hhhHHHHHHHHHHhhhcchhhhhcch Confidence 2222221 1111 122222122111110 0111111000000 Q ss_pred -----------------------HhccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHH Q lcl|Aclame:pro 68 -----------------------EERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLL 124 (526) Q Consensus 68 -----------------------~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~ 124 (526) .-..+...-.+.+...-+.+.+..+....+. ..++++.+++.+++... .|+.... T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~yl~g~pv~~~~~~~~-~~~e~~~~~l~~~~~~n-~~~~~~~ 132 (474) T protein:vir:94 55 PIEEKEDFETGGNVRRLDVSVNNKLNNSFDSEIVDTRVGYLHGVPVTYDLDENA-EKNEKLKKFITNFAIRN-SVDDEDS 132 (474) T ss_pred hhhhhhhhhhcccccccccCcccccccchHHHHHHhHhhheeccceeEeeCCCC-cchHHHHHHHHHHHhhc-CHhHHHH Confidence 0014455556666667777888777754332 34556778888888765 4677666 Q ss_pred HHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCcee-EecccC----------------------------CceEEec Q lcl|Aclame:pro 125 DAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQSWF-QLNPED----------------------------QNELRLR 174 (526) Q Consensus 125 ~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f-~~~~~~----------------------------~~~l~~~ 174 (526) .+. ++.-||.+ .+++|...+|.+....+.+.. .| .|+... .....+. T Consensus 133 ~~~~~~~~~G~a-~~~~~~d~~~~~~~~~i~p~~--~~~v~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 209 (474) T protein:vir:94 133 EIGKMAAICGYG-ARLAYIDTNGDIRIKNIDPYN--VIFVGDNILEPTYSLRYFYEKDDDNGTDYVYAEFYDNAYYYVFR 209 (474) T ss_pred HHHHHHhhcCeE-EEEEEeCCCCeeEEEEEcccc--eEEEEcCCCceEEEEEEEEEeeCCCceEEEEEEEEcCceEEEEe Confidence 655 68889974 567776555654433222211 11 111000 0011111 Q ss_pred cCCCCc-e----eecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHH Q lcl|Aclame:pro 175 DNSPAG-E----ALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKA 249 (526) Q Consensus 175 ~~~~~g-~----~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~ 249 (526) ..+..+ . .-.+.+.+-..+- ..++.|.|.+..+....=-=...++..+..++.|..|+++.+-- +.+++... T Consensus 210 ~~~~~~~~~~~~~~~~~g~vPvv~~--~n~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~i~g~-~~~~~~~~ 286 (474) T protein:vir:94 210 GEGIDALQEVGRYEHLFDYNPLFGV--PNNKEMIGDAEKVIHLIDAYDLTMSDASSEISQTRLAYLVLRGM-GMSEEMIQ 286 (474) T ss_pred ecCCCcccccccccCCCCccceEEe--cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhccC-CCCchhhh Confidence 111110 0 0112222211111 25778999998876655555667888888999999998887532 22232222 Q ss_pred HHHHHHHHhhc-CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHH Q lcl|Aclame:pro 250 TLLRAVTGLGH-AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRH 328 (526) Q Consensus 250 ~l~~al~~~~~-~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~ 328 (526) .+.. ....+.+.+.++++++.. .+...++..++.+.+.|...-.+..++.+...|+.+.-|+ +....-.. T Consensus 287 -------~~~~~~~i~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al-~~~~~~l~ 357 (474) T protein:vir:94 287 -------ETQKSGAFELFDKDMDVKYLTKD-VNDTMIENHLDRIEKNIMRFAKSVNFNSDEFNGNVPIIGM-KLKLMALE 357 (474) T ss_pred -------hhhhcceeEecCCCCceeEEecc-CCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHH-HHHHHHHH Confidence 2222 334455888899999754 3456789999999999988755554443322111111111 11111122 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cC--CCCCCc-ccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhC Q lcl|Aclame:pro 329 DLLASDARQLAATLSRDLLWPLLVL-NR--PGSPDV-RRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLG 404 (526) Q Consensus 329 ~~~~ad~~~i~~~ln~~li~~l~~~-Nf--~~~~~~-~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~G 404 (526) ..+..-.+.+...+. ++++.++.+ +. .+..+. -.-.++.|...-+.|..+.++.+.+++ |+ +|.+.+.+.++ T Consensus 358 ~k~~~~~~~~~~~l~-~~~~li~~~l~~~~~~~~~~~~~~i~~~f~~~~p~d~~e~a~~~~kl~--g~-iS~et~~~~l~ 433 (474) T protein:vir:94 358 NKCMTFERKMTAMLR-YQFKVILSALKRKGYNLDDDSYLNLIFKFTRNIPVNKLEESQVLINLK--GQ-VSERTRLGQSQ 433 (474) T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCCccccccceEEeCCCCCCCHHHHHHHHHHHh--cc-CchHHHHHhCC Confidence 223333445555553 355555432 22 111111 123567888888999999999999985 66 89999999987 Q ss_pred C-CCCCccchhcccCCCcccccccccccccccccccccccccccchH Q lcl|Aclame:pro 405 I-PQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALD 450 (526) Q Consensus 405 l-p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (526) + +.+...-+-+..... ................... ..+ .+ T Consensus 434 ~v~d~~~E~eri~~E~~--e~~~~~~~~~~~~~~~~~~--~~~--s~ 474 (474) T protein:vir:94 434 LVDDVDYELDEMEKESL--EFNDKLPDIDEGDANDKSQ--NNQ--SE 474 (474) T ss_pred CCCCHHHHHHHHHHHHH--HHHhhcccccCCCcCCCCc--ccc--CC Confidence 5 332211000000000 0000000000000000000 000 00 No 132 >protein:vir:3743 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043484;genbank:gi:9628619;genbank:GeneID:1261113 Probab=98.97 E-value=5.7e-09 Score=65.78 Aligned_cols=322 Identities=12% Similarity=0.009 Sum_probs=173.2 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcc--cCCC-------HHHHHHHHHHHHhcc Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEA--EQGN-------LQAQAELFMDMEERD 71 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a--~~g~-------~~~~~~l~~~m~~~D 71 (526) |.+ ............+..+.... ....-.|..+-+-+.-. +.|+ +..+++++ +.. T Consensus 1 ~~~-----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~~epp~~~~~la~~~----~~~ 64 (345) T protein:vir:37 1 MKT-----------NVKTDNKKGIVIAPINDRTF-SLSEITASPALDYVGIGFDENYNCYLPPVNRHALAKLP----HQN 64 (345) T ss_pred CCc-----------cccccchhhhcCCCceEEEe-ecCCcccchhhcccceeeecCCccccCCCCHHHHHHHh----hcc Confidence 432 10000000000000011000 00000111111111110 1232 22234443 479 Q ss_pred HHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecCCeeEEe Q lcl|Aclame:pro 72 AHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPL 151 (526) Q Consensus 72 ~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~~~~ 151 (526) +|-+++|.-++.-+++ .+.|+..-+.. .|..++ ++-+.+|.+.+|++.+..|. +. T Consensus 65 ~~h~~~i~~k~n~l~~---~~~Pn~~~t~~----------------~f~~~v---~d~ll~Gnay~~i~rn~~G~---~~ 119 (345) T protein:vir:37 65 AQHGGILHSRANMVSA---TYEGGKALSKM----------------EMRALC---LNLIQFGDVGLLKVRNGFGQ---VV 119 (345) T ss_pred hhhcchhhhhhhHHhh---ccCCCCCCCHH----------------HHHHHH---HHHHhcCCeEEEEEECCCCC---EE Confidence 9999999888777765 24665443221 133343 35567899999999765543 45 Q ss_pred eeeeecCceeEecccCCceEEeccC----CCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 152 AFHHRPQSWFQLNPEDQNELRLRDN----SPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEML 227 (526) Q Consensus 152 ~l~~r~~~~f~~~~~~~~~l~~~~~----~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~ 227 (526) .|.+.++.+.+...+.+..+..+.. ......+++...++.+.....+..||.+-+..+.-....-.....+-..|. T Consensus 120 ~L~pl~~~~vr~~~d~~~~~~~~~~~~~~~g~~~~~~~~eViHir~~~~~~~~~Gl~~~~~a~~si~l~~~a~~~~~~~f 199 (345) T protein:vir:37 120 RLVPLSSLYLRVHKDGGYSYLMKKSLYDTAQEIYRYDAKDIIFIKLYDPMQQVYGSPDYVGGIQSALLNSDATVFRRRYF 199 (345) T ss_pred EEEEecCceeEEeecCCeeEEEeeeeeccCceEEEEccccEEEEcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHH Confidence 7888898888776666554433322 223345677776555544444667899988887777777777777777788 Q ss_pred HHcCCceEEEecC-CCCCHHHHHHHHHHHHHhhcC-----eEEEecCCc--eEEEeecCCC-ChHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 228 EIYGLPIRLGKYP-PGTADEEKATLLRAVTGLGHA-----AAGIIPETM--AIDFQQAAQG-SSEPFLAMMRQSEDAISK 298 (526) Q Consensus 228 E~~G~P~~vgk~~-~~~~~~e~~~l~~al~~~~~~-----~~~iip~~~--~ie~~~a~~~-~~~~~~~li~~~d~~Isk 298 (526) ...++|--|.+++ +..++++.+.+.+++++.... ..+.+|.|. .+++...+.. .-..|.+.-++-..+|+. T Consensus 200 ~NGa~~~~Il~~t~~~l~~e~~~~lk~~~~~~~g~~n~~~~~i~~~~g~~~G~~~~pl~~~~~d~qf~e~k~~~~~dI~~ 279 (345) T protein:vir:37 200 SNGAHMGFILYSTDPDLTEEMEEEIARKISESKGVGNFRSMFVNIAGGHPDGLKVIPIGDTGTKDEFANIKNISAQDVLT 279 (345) T ss_pred hccCCcceEEEeCCCCCCHHHHHHHHHHHHHhcCccccCceeEecCCCCccceeEEEccCChhHHHHHHHHHHhHHHHHH Confidence 7777887777654 567888999998888876321 224445442 2555554432 234588888888999999 Q ss_pred HHhchhhhcccccccchhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCH Q lcl|Aclame:pro 299 AVLGGTLTSTTSQSGGGAFALGQVHNEVR-HDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADI 377 (526) Q Consensus 299 ~ilGqtltt~~~~~~~gS~a~~~vh~~v~-~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl 377 (526) +...+.--.+..++++|+++-.+-...++ ..-+.--++.|++.+|+. .+ +++ -..++|+..+ + T Consensus 280 a~~VPp~liGi~~~~t~~~s~~e~~~~~f~~~~l~P~~~~ie~~ln~~-----~e--~~~------~~~i~F~~~~---l 343 (345) T protein:vir:37 280 AHRFPAGLSGIIPTNTGGLGDPLKYREVYHYDEVMPLQEIIAETINQD-----PE--IKN------LLKIKFREQN---F 343 (345) T ss_pred HhCCCHHHhccccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hc--cCC------cceEEECchh---h Confidence 98666543332233344454444334332 334555666777777641 11 111 1245665332 2 Q ss_pred HH Q lcl|Aclame:pro 378 TS 379 (526) Q Consensus 378 ~~ 379 (526) .. T Consensus 344 ~k 345 (345) T protein:vir:37 344 AK 345 (345) T ss_pred cC Confidence 22 No 133 >protein:vir:95542 Length: 548 # NCBI annotation: Putative portal protein # Family: family:all:47 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293348;genbank:gi:148912769;genbank:GeneID:5228194 Probab=98.96 E-value=9.3e-09 Score=64.61 Aligned_cols=436 Identities=11% Similarity=0.035 Sum_probs=207.6 Q ss_pred CCeeecCCCCccCccccchhhhhh--h-----hhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSR--L-----AGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAH 73 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~ 73 (526) |+ |+|..+.||.+....+-..+. + ++..+....++. ...+.. .+ ..+......-.+++...+++ T Consensus 1 Mn-~iDr~i~~~sP~~a~~R~~ar~~~~~y~aa~~~r~~~~~~~-~~s~~~--~i-----~~~~~~lr~RaRdL~rNn~~ 71 (548) T protein:vir:95 1 MN-LIDRLLEPLAPELVARRLAAREAIQAYEAARPGRTHKAKRQ-PLGADT--SL-----QKSAVSMREQCRKLDEDHDL 71 (548) T ss_pred Cc-hHHhHhhhcchHHHHHHHHhHHHhccccccCccccccccCC-CCChHH--HH-----HHHHHHHHHHHHHHHhcChH Confidence 99 999999999754422111111 0 111111122211 111111 11 12345566667788889999 Q ss_pred HHHHHHHHHHHHhcC-CceEecCC--CCCHHHHHHHHHHHHHHhc---------CcCHHHHHHHHHH-hhhhcceeeeEE Q lcl|Aclame:pro 74 LFAEMSKRKRAILGL-DWAVEPPR--NASAAEKADADYLHELLLD---------LEGLEDLLLDALD-GIGHGYSCIELE 140 (526) Q Consensus 74 v~s~l~~Rk~av~~~-~w~v~~~~--~~~~~~~~~a~~v~~~l~~---------~~~~~~~i~~~ld-a~~~G~s~~Ei~ 140 (526) +.++++.....|.+. -+.|.|.. .+....++.++.|+..+.. .-+|..+...++. .+--|=.++-+. T Consensus 72 a~~av~~~~~nvVG~~G~~i~p~~l~~d~~~a~~l~~~ie~~w~~Wa~~~D~~g~~~f~~lq~l~~R~~~~dGE~f~~~~ 151 (548) T protein:vir:95 72 VTGLLDRLEERVVGGSGIGVEPLPLRLDGSVHAELAMEIRSAWAEWSLSPETSGELTRPQVERLMCRTWLRDGEGLAQKL 151 (548) T ss_pred HHHHHHHHHHhccCccccceeeeecCCCHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHHhCCceEEEee Confidence 999999999999974 45666532 2223334444544444422 1247777776664 567888888888 Q ss_pred EeecC----CeeEEeeeeeecCceeE---------------ecccCCce--EEeccCCC---------CceeecCCCeEE Q lcl|Aclame:pro 141 WALQG----REWMPLAFHHRPQSWFQ---------------LNPEDQNE--LRLRDNSP---------AGEALQPFGWII 190 (526) Q Consensus 141 w~~~~----g~~~~~~l~~r~~~~f~---------------~~~~~~~~--l~~~~~~~---------~g~~lp~~k~i~ 190 (526) |.+.. +..++-+|..+++.++. ||..++.. .+.....+ .-..+|... |+ T Consensus 152 ~~~~~~~~~g~~~~~~lqliepd~l~~~~~~~~~~i~~GIE~D~~Grp~aY~i~~~hPgd~~~~~~~~~~~rvpA~~-Vl 230 (548) T protein:vir:95 152 MGRVPNYTFATSVPFALELLEPDYLPFSYNNLSKGIVQGIERDTWRRKRAYHLLKDHPGNLQTLGGSLAVKRVEAER-II 230 (548) T ss_pred ecccccccCCcccceEEEEechhhcCCCCCCCCCceeeeeEECCCCceEEEEEeecCCCcccccccccceeeechhH-he Confidence 87643 33344455555554332 22111110 01111111 112355444 55 Q ss_pred Eeec-CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHH-H-HHHHHHHHHhhcCeEE-Ee Q lcl|Aclame:pro 191 HRPR-ARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEE-K-ATLLRAVTGLGHAAAG-II 266 (526) Q Consensus 191 ~~~~-~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e-~-~~l~~al~~~~~~~~~-ii 266 (526) |.+. ...|..-|.++|..+.....-........+.-...-.+=..+.|.+.+..... . ..--.....+..+..+ .+ T Consensus 231 Hif~~~r~gQ~RGvs~lapvl~~l~~l~~y~dael~~aki~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~pG~iv~~L 310 (548) T protein:vir:95 231 HIAYRKRIGQNRGVPMLHAVLIRLADLKDYEESERVAARISAALAMYIKKGNPDSYTVEPGKDRKNRTIPIAPGMVFDDL 310 (548) T ss_pred ecccccCCccccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCccccCCCCcccccccccccCCcccccc Confidence 5554 45778889999988876665444444444444444443334444432211000 0 0000011123444443 46 Q ss_pred cCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhch---hhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 267 PETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGG---TLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLS 343 (526) Q Consensus 267 p~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGq---tltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln 343 (526) +.|.+|+|.+.+.. +..|..|.+.+-+.|+..+ |- .||.+ .. +|||.+-.-..-+...++....++...+- T Consensus 311 ~pGe~i~~~~p~~p-~~~~~~f~~~~lr~IAagl-GipYe~ltgD---~s-~nYSS~R~~l~e~~r~~~~~q~~~i~~~~ 384 (548) T protein:vir:95 311 EPGEDVGMIESNRP-NPFLEGFRNGQLRMIGAGT-RSTYSSVSRA---YD-GTYSAQRQELVEGWLGYDLLQHEFIDYWC 384 (548) T ss_pred CCCceeeecCCCCC-CCCHHHHHHHHHHHHHhhc-CCCHHHHhcc---cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 88999999986543 3458999999999999996 43 34443 22 46665544444444455555555554444 Q ss_pred HHHHHHHHH-------hcCCCCCCcccceeEEec--CccccCHHHHHHHHHHHHhCCCcCCH------------------ Q lcl|Aclame:pro 344 RDLLWPLLV-------LNRPGSPDVRRAPRLVFD--LREQADITSMAQSIPALVNVGLEIPS------------------ 396 (526) Q Consensus 344 ~~li~~l~~-------~Nf~~~~~~~~~p~~~~~--~~e~edl~~~a~~~~~l~~~G~~v~~------------------ 396 (526) +-+..++++ ++.++......+....+. .....|..+-+++....++.|+.--. T Consensus 385 ~Pi~~~wle~a~l~G~i~lP~~~~~~~~~~~~W~~P~~~~iDP~Kea~A~~~~i~~Gl~T~~~~~a~~G~D~~ev~~q~a 464 (548) T protein:vir:95 385 RPVYRSWLQMYLLARKERLPADVDHRTLYAAVYQGPVMPWINPMHEANAWELLVKAGFADEAEVARARGRDPRELKKSRE 464 (548) T ss_pred HHHHHHHHHHHHHcCCcCCCCCCCchhheeeeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHH Confidence 444443332 122222222222233332 23346888888888888898873222 Q ss_pred --HHHHHHhCCCCCCccch-hcccCCCccccccc-ccccccccc---------------cccccc---------cccccc Q lcl|Aclame:pro 397 --AWVYDKLGIPQPAKNEP-VLRSAAQPAILSRQ-HGQRVAALA---------------TIVGPR---------YGDQQA 448 (526) Q Consensus 397 --~~~~e~~Glp~~~~~e~-~~~~~~~~~~~~~~-~~~~~~~~~---------------~~~~~~---------~~~~~~ 448 (526) ....+++||+.+.+... .......+..+... ........+ .-+.+. .+.+.. T Consensus 465 ~E~~~~~~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (548) T protein:vir:95 465 TEIKANRAAGLVFSSDAYHQLVKSGMDPVEAVQKVYLGVGKMLTADEARELVNRYGAGLPVPGPDFPNESNNGGADGQPS 544 (548) T ss_pred HHHHHHHHcCCCCCCcccccccccccCCCCchhhhccccccccccchhHHhhccCCCCCcCCCCCCCcccccCCCCCCCC Confidence 12234567654332211 11111111111100 000000000 000000 000000 Q ss_pred hHHH Q lcl|Aclame:pro 449 LDKA 452 (526) Q Consensus 449 ~~~~ 452 (526) ..+. T Consensus 545 ~~~~ 548 (548) T protein:vir:95 545 NPDP 548 (548) T ss_pred CCCC Confidence 0000 No 134 >protein:vir:79150 Length: 368 # NCBI annotation: bacteriophage gpQ # Family: family:all:196 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165254;genbank:gi:145708079;genbank:GeneID:5247161 Probab=98.96 E-value=3.6e-09 Score=66.90 Aligned_cols=344 Identities=12% Similarity=0.019 Sum_probs=168.0 Q ss_pred CCeeecCCCCccCcccc---c----hhhhhhhhhhhhhhh-hhhhcccCHHHHHHHHHcccCCCHHH----HHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQL---R----EPQTSRLAGLAKEFA-QHPAKGLTPAKLARILVEAEQGNLQA----QAELFMDME 68 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~---~----~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~l~~a~~g~~~~----~~~l~~~m~ 68 (526) |+|=.-...+--..... . ..++..-++....|. +.|..-++...+.+.+.-...|++-. +.-| ..+. T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~p~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~l-a~~~ 79 (368) T protein:vir:79 1 MSRNKTRRAARAASAHVRTANTDAPTEHHTDRAAQAEVFSFGDPVEVLDRRELLDYVECMRMGQWYEPPMPWDGL-ARSF 79 (368) T ss_pred CCccccccchhccCcccccccccCcchhhccccCceEEEEcCCceeecchhhHHHHHHHHhccchhccCcCHHHH-HHHH Confidence 99733222221111000 0 001111111111111 11211222222222223333342110 1111 1223 Q ss_pred hccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecCCee Q lcl|Aclame:pro 69 ERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREW 148 (526) Q Consensus 69 ~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~ 148 (526) +..+|-.+++..+...+ .+. ..|+..-+. ..|..+ +.+-+.+|.+++|++.+..|. T Consensus 80 ~~~~~h~~~~~~~~n~l-~l~--~~Pn~~~t~----------------~~f~~l---~~d~ll~Gnay~~~~r~~~G~-- 135 (368) T protein:vir:79 80 RAAAHHSSAVYVKRNIL-VST--FIPHPLLSR----------------ATFERL---VLDWQVFGNAYLERRENVLGG-- 135 (368) T ss_pred hhccccchhhhhhcchh-hhh--cCCCcCCCH----------------HHHHHH---HHHHhhcCCeEEEEEEcCCCC-- Confidence 34555566555543332 221 233322111 013333 345677899999998765442 Q ss_pred EEeeeeeecCceeEecccCCceEEeccCCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 149 MPLAFHHRPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLE 228 (526) Q Consensus 149 ~~~~l~~r~~~~f~~~~~~~~~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E 228 (526) +..|.+.++.+++...+.+.. ...........+++...++.+.....+..||.+.+..+......-.....+-..|.. T Consensus 136 -~~~L~~l~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~dIihir~~~~~~~~yGlsp~~~a~~si~l~~aa~~~~~~~~~ 213 (368) T protein:vir:79 136 -TIRLDTPLAKYVRRGLDLNTY-FFVQNWQQPYTFAAGSVFHLQEPDINQEVYGLPEYLSALNATWLNESATLFRRRYYK 213 (368) T ss_pred -EEEEEEeCcccceeeccCCEE-EEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh Confidence 557889988888776655443 333334445567777765555444456779999999998888887777777788888 Q ss_pred HcCCceEEEecC-CCCCHHHHHHHHHHHHHhhc--C--eEEEe-cCC--ceEEEeecCC-CChHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 229 IYGLPIRLGKYP-PGTADEEKATLLRAVTGLGH--A--AAGII-PET--MAIDFQQAAQ-GSSEPFLAMMRQSEDAISKA 299 (526) Q Consensus 229 ~~G~P~~vgk~~-~~~~~~e~~~l~~al~~~~~--~--~~~ii-p~~--~~ie~~~a~~-~~~~~~~~li~~~d~~Isk~ 299 (526) ..+.|--|.+++ +..++++++++.+++++... + ..+|+ |.| ..++++..+. ..-..|.+.-++-.++|+.+ T Consensus 214 NGa~~~gil~~~~~~l~~e~~~~lk~~~~~~~G~~N~g~~~vl~~~g~~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~a 293 (368) T protein:vir:79 214 NGSHAGFILYMTDAAQKQEDVDTLREAMKSAKGPGNFRNLFMYAPNGKKDGIQLLPVSEVAAKDEFWNIKNVTRDDQLAA 293 (368) T ss_pred ccCCCceEEEeCCCCCCHHHHHHHHHHHHHhcCCcccCceeEecCCCCccceeEEEcCCCHHHHHHHHHHHHhHHHHHHH Confidence 888888777765 56788999999888877432 1 23444 332 2345555442 23346888889999999999 Q ss_pred HhchhhhcccccccchhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCcc--ccC Q lcl|Aclame:pro 300 VLGGTLTSTTSQSGGGAFALGQVHNEVR-HDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLRE--QAD 376 (526) Q Consensus 300 ilGqtltt~~~~~~~gS~a~~~vh~~v~-~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e--~ed 376 (526) ...+..-.+...+++++++-.+....++ ..-+.--++.|+ .+|..| +. . .++|+... .-| T Consensus 294 f~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~Pl~~~ie-~ln~~l----------~~-e-----~~rF~~~~l~~~D 356 (368) T protein:vir:79 294 HRVPPQLMGIIPNNTGGFGDVEKAAMVFARNEVKPLQDRLL-AINDWI----------GD-E-----VVRFAPYALGGHD 356 (368) T ss_pred hCCCHHHccccCCCCCccccHHHHHHHHHHHHHHHHHHHHH-HHHhcc----------Cc-c-----eeeechhHhhccc Confidence 8766544433323333343322222221 122333333333 122211 10 0 13333211 122 Q ss_pred HHHHHHHHHHHH Q lcl|Aclame:pro 377 ITSMAQSIPALV 388 (526) Q Consensus 377 l~~~a~~~~~l~ 388 (526) .+..|+.-.+-. T Consensus 357 ~~a~a~~~~rsa 368 (368) T protein:vir:79 357 QPAAAPGGQRSA 368 (368) T ss_pred ccccCCcccccC Confidence 222222111110 No 135 >protein:vir:97336 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240606;genbank:gi:66396273;genbank:GeneID:5133692 Probab=98.87 E-value=2.2e-08 Score=62.53 Aligned_cols=414 Identities=11% Similarity=0.010 Sum_probs=187.7 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhh-hhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHh---------- Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKE-FAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEE---------- 69 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~---------- 69 (526) .++-+=+-|+.+ .|-+++....-.. +....-..++..-+...+.... ....++..+++...- T Consensus 10 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~-~~~~r~~~l~~YY~g~~~i~~~~~~ 82 (492) T protein:vir:97 10 VAQALIKGGNIL------YPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHL-EKLPEISIGQEYYEQRPDIVKEPKP 82 (492) T ss_pred HHHHHhcCCcee------eccchhhhhHhhhcccCCCchhhHHHHHHHHHHHHH-HHHHHHHHHHHHhcccCcccccccc Confidence 111111223322 1111111111100 0000001112222222222111 112222222221100 Q ss_pred ----------------ccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-Hhhhh Q lcl|Aclame:pro 70 ----------------RDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGH 132 (526) Q Consensus 70 ----------------~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~ 132 (526) -.....-++.+...-+.+.+..+... ++...+++++++.+ +|++.+.++. ++.-| T Consensus 83 ~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl~g~p~~~~~~------d~~~~~~l~~~~~n--~~~~~~~~~~~~~~~~ 154 (492) T protein:vir:97 83 VDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHT------DDEVVKRIDEVLGN--RFDDKLHSVLTGASNK 154 (492) T ss_pred ccccccccccccccccccchHHHHHHHHhhhhcccCceeccC------chHHHHHHHHHHhc--cHHHHHHHHHHHHhhc Confidence 02333444555555666777666532 23456777887754 4777777655 68889 Q ss_pred cceeeeEEEeecCCeeEEeeeeeecCcee--Eeccc-CC-ce--EEec-cCCCCceee-cCCCeEEEee----------- Q lcl|Aclame:pro 133 GYSCIELEWALQGREWMPLAFHHRPQSWF--QLNPE-DQ-NE--LRLR-DNSPAGEAL-QPFGWIIHRP----------- 193 (526) Q Consensus 133 G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f--~~~~~-~~-~~--l~~~-~~~~~g~~l-p~~k~i~~~~----------- 193 (526) |. +.+++|...+|..... ..+|+.. .|+.. .+ .. +++. ........+ .+.+...+.+ T Consensus 155 G~-a~~~v~~d~dg~~~~~---~~~p~~~~~i~d~~~~~~~~~~vr~~~~~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~ 230 (492) T protein:vir:97 155 GI-EWLHPYLDEEGEFKLF---RVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSN 230 (492) T ss_pred Ce-EEEEEEecCCCceEEE---EEcccceEEEEcCCCCCceEEEEEEEeeccceeEEEEecCeEEEEEEecCeeeecccc Confidence 97 4567776555654433 2333221 11211 11 00 0000 000000000 0000000000 Q ss_pred -------------------cCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHH Q lcl|Aclame:pro 194 -------------------RARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRA 254 (526) Q Consensus 194 -------------------~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~a 254 (526) -.-..|+.|.|.+..+....=--...++.++..++.|..|+++++-.......+ . T Consensus 231 ~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~------~ 304 (492) T protein:vir:97 231 NLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPE------F 304 (492) T ss_pred cccccccccccCCCCCcceEEecCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCcccchh------H Confidence 000236779999988665555556678888999999999999987433222222 1 Q ss_pred HHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 255 VTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASD 334 (526) Q Consensus 255 l~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad 334 (526) ...+....++.++.+.+++++.. ..+...++.+++.+.+.|.+.-....++.+...++.+.-|+ +....-....+..- T Consensus 305 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~L~~~I~~~s~~p~~~~~~~~~n~Sg~Al-~~~~~~l~~ka~~~ 382 (492) T protein:vir:97 305 KRLLRYYGAIKVSDNGGVDTIQV-EVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVAL-EFLYTNLNLKADKL 382 (492) T ss_pred HHHHhhccceecCCCCcceeEec-cCCHHHHHHHHHHHHHHHHHHhCCCCCCccccccCcHHHHH-HHHHHHHHHHHHHH Confidence 22345556677899999999874 34556789999999999988865555544322111111111 11111122333444 Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCC-CCCCccch Q lcl|Aclame:pro 335 ARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGI-PQPAKNEP 413 (526) Q Consensus 335 ~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Gl-p~~~~~e~ 413 (526) .+.+...+. ++++.++.+.--.. . ...-.+.|....+.|..+.++++.++. |+ +|.+.+.+.++. +.+..+-+ T Consensus 383 ~~~f~~~l~-~~~~li~~~~~~~~-~-~~~i~v~f~~~~p~~~~e~a~~~~kl~--G~-iS~et~l~~l~~v~d~~~Ele 456 (492) T protein:vir:97 383 ARKAKVAIQ-ELLWFVFEHFDIKG-E-HKDVDISFNYNKVANTELQVQTAQQSM--GI-VSHETVLENHPFVEDLQAELE 456 (492) T ss_pred HHHHHHHHH-HHHHHHHHHhcCCc-c-cceeeEEecCCCCCCHHHHHHHHHHHh--cc-CchHHHHHhCCCCCCHHHHHH Confidence 455556664 35665555432111 1 122357788888999999999999985 66 899999998875 32221100 Q ss_pred hcccCCC--ccccccccccccccccccccccccccc Q lcl|Aclame:pro 414 VLRSAAQ--PAILSRQHGQRVAALATIVGPRYGDQQ 447 (526) Q Consensus 414 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (526) -+..... ....................+.....+ T Consensus 457 ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) T protein:vir:97 457 RIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) T ss_pred HHHHHHHHHHHhhhccccCCCCCCcccccccccccC Confidence 0000000 000000000000000000000000000 No 136 >protein:vir:107662 Length: 427 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003893;genbank:gi:45686310;genbank:GeneID:2773002 Probab=98.87 E-value=2.3e-08 Score=62.47 Aligned_cols=375 Identities=11% Similarity=-0.017 Sum_probs=176.8 Q ss_pred ccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCC------CHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 14 TQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQG------NLQAQAELFMDMEERDAHLFAEMSKRKRAILG 87 (526) Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g------~~~~~~~l~~~m~~~D~~v~s~l~~Rk~av~~ 87 (526) .+..+. .-+..++-....| .-+..++++ .+.++.+-++.++++.-.-.++ T Consensus 1 ~~~~~~-----------------------d~~~~~~~~~~~~~~~~~~~~~~~~~l~-a~Y~~~~l~~~~Vd~~aed~~r 56 (427) T protein:vir:10 1 MKIVKH-----------------------DGYNDIFNGGADGSPKPFFMSDASYHVG-SFYNDNATAKRIVDVIPEEMVT 56 (427) T ss_pred CCcccc-----------------------chHHHHhhcCCCCcccCccccCchHHHH-HHHHcCchhhhhhccchHHhhc Confidence 111111 1111111000000 001122443 3455789999999998888888 Q ss_pred CCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeec-------CCeeEEeeeeeecCce Q lcl|Aclame:pro 88 LDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQ-------GREWMPLAFHHRPQSW 160 (526) Q Consensus 88 ~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~-------~g~~~~~~l~~r~~~~ 160 (526) ..|+|.- ++ +.++ ++..+.++--+..+...+-.+.+||++++=+.-.-. .+.-.++.|.+.++.+ T Consensus 57 ~g~~i~g--~~--~~~~----~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~l~~p~~~~g~l~~l~v~d~~~ 128 (427) T protein:vir:10 57 AGFKMSG--VK--DEKE----FKSLWDSYKLDSSLVDLLCWARLYGGAAMVAIIKDNRMLTSQAKPGAKLEGVRVYDRFA 128 (427) T ss_pred CCccccC--cc--HHHH----HHHHHHHhhHHHHHHHHHHhccccceeEEEEEecCCCccccccCCCcceeEEEEechhc Confidence 8888862 21 2222 333344443345555555579999999986542110 1112334555555554 Q ss_pred eEecccC--------Cce--EEecc-CCCCceeecCCCeEEEeec------CCCCccccchhHH-HHHHHHHHHHHHHHH Q lcl|Aclame:pro 161 FQLNPED--------QNE--LRLRD-NSPAGEALQPFGWIIHRPR------ARSGYVARSGLFR-VLAWPYLFRHYATSD 222 (526) Q Consensus 161 f~~~~~~--------~~~--l~~~~-~~~~g~~lp~~k~i~~~~~------~~~g~p~g~gLl~-~~~~~~~fK~~~~~~ 222 (526) ....... +.. +.... ++..+..+.+.+++++... ....+.||.|+|. .+|..+.--.....- T Consensus 129 ~~~~~~~~dp~s~~fg~P~~y~v~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~ 208 (427) T protein:vir:10 129 ITVEKRVTNARSPRYGEPEIYKVSPGDNMQPYLIHHSRVFIADGERVAQQARKQNQGWGASVLNKSLIDAICDYDYCESL 208 (427) T ss_pred ccccccccCccccccCcceEEEEecCCCCcceEEccccEEEecCCCchhhhcccCCcccchhhhHHHHHHHHHHHHHHHH Confidence 4322111 111 11111 1222346777777766422 2367788999775 455544433344444 Q ss_pred HHHHHHHcCCceEEEecCC--------CCCHHHHHHHHHHHHHhhc-CeEEEecCCceEEEeecCCCChHHHHHHHHHHH Q lcl|Aclame:pro 223 LAEMLEIYGLPIRLGKYPP--------GTADEEKATLLRAVTGLGH-AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSE 293 (526) Q Consensus 223 w~~f~E~~G~P~~vgk~~~--------~~~~~e~~~l~~al~~~~~-~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d 293 (526) -+..+.++.+.+ .|++. +.....+.++....+..+. ++.+++.++.+++.+..+=++ ...+++..- T Consensus 209 ~~~l~~k~~~~v--~k~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e~~~~~lsg---l~~~~~~~~ 283 (427) T protein:vir:10 209 ATQILRRKQQAV--WKVKGLAEMCDDDDAQYAARLRLAQVDDNSGVGRAIGIDAETEEYDVLNSDISG---VPEFLSSKM 283 (427) T ss_pred HHHHHHHhcccc--ccchhHHHHhcCccchHHHHHHHHHHHHhcCcccceeeecCCCceeEEecccCC---hHHHHHHHH Confidence 456677776553 34421 1111223333333333333 345666677889988764332 344666666 Q ss_pred HHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCCCcccceeEEecC- Q lcl|Aclame:pro 294 DAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQ-LAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDL- 371 (526) Q Consensus 294 ~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~-i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~- 371 (526) .+||.+.-- .+|.--++..+|-.|.|+-.....-+.+++.+.. +...+ +.|++.++. + . + -+|+|.. T Consensus 284 ~~iaaa~~I-P~t~L~G~sp~Glnstgd~D~~nyyd~i~~~Qe~~l~p~l-~~l~~~i~~-s---~---~--~~~~f~pL 352 (427) T protein:vir:10 284 DRIVSLSGI-HEIIIKNKNVGGVSASQNTALETFYKLVDRKREEDYRPLL-EFLLPFIVD-E---E---E--WSIEFEPL 352 (427) T ss_pred HHHHhhhCC-CeeeeccCCccccccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhc-C---C---C--cEEEeCCC Confidence 788887533 3332223333344466666667778888877754 33334 345554431 1 1 1 1234432 Q ss_pred -----ccccCH-HHHHHHHHHHHhCCCcCCHHHHHHHhC----CCCCCccchhcccCCCccccccccccccccccccccc Q lcl|Aclame:pro 372 -----REQADI-TSMAQSIPALVNVGLEIPSAWVYDKLG----IPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGP 441 (526) Q Consensus 372 -----~e~edl-~~~a~~~~~l~~~G~~v~~~~~~e~~G----lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (526) .+..++ +..+++++++++.|+ ++.+++++.+. .....+...+... .++... ...++ T Consensus 353 ~~~s~kEkaei~~~~a~a~~~~~~~gv-i~~~e~r~~L~~~~~~~~~~~~~~~~~e-----~~~~~~--------e~~p~ 418 (427) T protein:vir:10 353 SVPSKKEESEITKNNVESVTKAITEQI-IDLEEARDTLRSIAPEFKLKDGNNINIR-----EPEETT--------EPEPG 418 (427) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHhhhccccCCCCcccccc-----ccchhc--------CCCCC Confidence 222222 466788999999997 89988888761 1111111110000 000000 00000 Q ss_pred ccccccchH Q lcl|Aclame:pro 442 RYGDQQALD 450 (526) Q Consensus 442 ~~~~~~~~~ 450 (526) ........+ T Consensus 419 ~~e~~~d~~ 427 (427) T protein:vir:10 419 LGEKLEDEN 427 (427) T ss_pred CCCCCCCCC Confidence 000000000 No 137 >protein:vir:94805 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240531;genbank:gi:66396197;genbank:GeneID:5133585 Probab=98.84 E-value=3e-08 Score=61.84 Aligned_cols=412 Identities=12% Similarity=0.043 Sum_probs=186.2 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhh-hhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHH----------- Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAK-EFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDME----------- 68 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~----------- 68 (526) .++-+=+-|+.+- |-+++.+.... .+....-..++..-+...+..... ...++..+.+... T Consensus 10 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~-~~~r~~~l~~YY~g~~~I~~~~~~ 82 (492) T protein:vir:94 10 VAQALIKGGNILY------PSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLE-KLPEISIGQEYYEQRPDIVKEPKP 82 (492) T ss_pred HHHHHhcCCceee------cCccchhhhhhcccccCCchhhHHHHHHHHHHHHHH-HHHHHHHHHHHhcccccccccccc Confidence 1111111222211 10000000000 000000001111111122111110 1111111111100 Q ss_pred ---------------hccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-Hhhhh Q lcl|Aclame:pro 69 ---------------ERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGH 132 (526) Q Consensus 69 ---------------~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~ 132 (526) ...+...-.+.+...-+.+.+..+... ++...+.++.++.+ +|++.+.++. ++.-| T Consensus 83 ~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl~G~p~~~~~~------d~~~~~~l~~~~~n--~~~~~~~~~~~~a~~~ 154 (492) T protein:vir:94 83 VDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHT------DDEVVKRIDEVLGN--RFDDKLHSVLTGASNK 154 (492) T ss_pred ccccccccccccccccccchHHHHHHHHHhhhcccCceeccC------chHHHHHHHHHHhc--cHHHHHHHHHHHHhhC Confidence 013444555666666677777776532 23456677777754 4677777655 68889 Q ss_pred cceeeeEEEeecCCeeEEeeeeeecCce-e-EecccC-Cce---EEecc-CCCCceee---------------------- Q lcl|Aclame:pro 133 GYSCIELEWALQGREWMPLAFHHRPQSW-F-QLNPED-QNE---LRLRD-NSPAGEAL---------------------- 183 (526) Q Consensus 133 G~s~~Ei~w~~~~g~~~~~~l~~r~~~~-f-~~~~~~-~~~---l~~~~-~~~~g~~l---------------------- 183 (526) |.+. +++|...+|..... ..+|.. | .|+... +.. +++.. .......+ T Consensus 155 G~a~-~~v~~d~dg~~~~~---~~~p~~~~~v~d~~~~~~~~a~ir~~~~~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~ 230 (492) T protein:vir:94 155 GIEW-LHPYLDEEGEFKLF---RVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSN 230 (492) T ss_pred CeEE-EEEEecCCCceEEE---EEcccceEEEEcCCCCCceEEEEEEEeeccceeEEEEecCeEEEEEEecCeeeecccc Confidence 9775 55565445544332 223321 1 111110 000 00000 00000000 Q ss_pred -----------cCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHH Q lcl|Aclame:pro 184 -----------QPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLL 252 (526) Q Consensus 184 -----------p~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~ 252 (526) .++..|-... -..|+.|.|.+..+....=--...+..++..++.|..|.++.+--.+....+ . T Consensus 231 ~~~~~~~~~~~~~~g~vPvv~--~~nn~~~~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~~~---~- 304 (492) T protein:vir:94 231 NLENSKTHFSTGSWGKIPFIP--FKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPE---F- 304 (492) T ss_pred ccccccccccccCCCccceEE--ecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccchh---h- Confidence 1111110110 0246778999988766555555678889999999999999987433222222 1 Q ss_pred HHHHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHH Q lcl|Aclame:pro 253 RAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLA 332 (526) Q Consensus 253 ~al~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ 332 (526) ...+....++.++.+.+++++.. ..+...++..++++.+.|.+.--...++.+.-.++.+.-|+ +....-....+. T Consensus 305 --~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al-~~~~~~l~~k~~ 380 (492) T protein:vir:94 305 --KRLLRYYGAIKVSDNGGVDTIQV-EVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVAL-EFLYTNLNLKAD 380 (492) T ss_pred --HHHHhhccceecCCCCcceeEec-cCCHHHHHHHHHHHHHHHHHHhCCcCCCccccccCchHHHH-HHHHHHHHHHHH Confidence 22344556677899999999874 34556688899999999888876655554322111111111 111122233444 Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCC-CCCCcc Q lcl|Aclame:pro 333 SDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGI-PQPAKN 411 (526) Q Consensus 333 ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Gl-p~~~~~ 411 (526) .-.+.+...+. ++++.++.+..-.. . .....+.|....+.|..+.++.+.+++ |+ +|.+.+.+.++. +.+..+ T Consensus 381 ~k~~~f~~~l~-~~~~li~~~~~~~~-~-~~~i~v~f~~~~p~~~~e~~~~~~kl~--gi-iS~et~~~~l~~v~d~~~E 454 (492) T protein:vir:94 381 KLARKAKVAIQ-ELLWFVFEHFDIKG-E-HKDVDISFNYNKVANTELQVQTAQQSM--GI-VSHETVLENHPFVEDLQAE 454 (492) T ss_pred HHHHHHHHHHH-HHHHHHHHHhcCCc-c-cceeeEEecCCCCCCHHHHHHHHHHHh--cc-CchHHHHHhCCCCCCHHHH Confidence 44555666664 45666665532111 1 122467888888999999999999985 76 899999999875 322211 Q ss_pred chhcccCC--CcccccccccccccccccccccccccccchHH Q lcl|Aclame:pro 412 EPVLRSAA--QPAILSRQHGQRVAALATIVGPRYGDQQALDK 451 (526) Q Consensus 412 e~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (526) -+-+.... .....................+ .+...+ T Consensus 455 ~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~e 492 (492) T protein:vir:94 455 LERIEQEQMEYNKQLPNLDDGGADSAQQQERS----NNKESE 492 (492) T ss_pred HHHHHHHHHHHHhhccccccccCCCCccccCC----ccccCC Confidence 11000000 0000000000000000000000 000000 No 138 >protein:vir:10321 Length: 495 # NCBI annotation: ORF23 # Family: family:all:47 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758916;genbank:gi:27311190;genbank:GeneID:956137 Probab=98.84 E-value=3e-08 Score=61.83 Aligned_cols=428 Identities=11% Similarity=0.025 Sum_probs=197.2 Q ss_pred CCeeecCCCCccCccc--cchhhhh--hhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQ--LREPQTS--RLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFA 76 (526) Q Consensus 1 m~~~~~~~g~p~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s 76 (526) |. ++|. | .+..+. .++.... +-++.-+.+..++ +..+.. .+ .++......-.+++...++++.+ T Consensus 1 m~-~~~~-~-~~a~~~~~~~~~~~~~y~aa~~~~~~~~~~--~~s~d~--~~-----~~~~~~lr~RaRdl~rNn~~a~~ 68 (495) T protein:vir:10 1 MN-MTPS-G-YQSLASGLLVPVGASAYEGASGGHRWQDIG--DYGPDT--AV-----ASGIQTLRARSHHNVRNNPWATN 68 (495) T ss_pred CC-cccc-c-ccccchhhhhHHHhhhhhccccCcccCCCC--CCChhH--HH-----HHHHHHHHHHHHHHHhcChHHHH Confidence 76 5555 2 121111 1111111 1111222222222 222221 11 12344555667778889999999 Q ss_pred HHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcC-----cCHHHHHHHHHH-hhhhcceeeeEEEeec-CCeeE Q lcl|Aclame:pro 77 EMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDL-----EGLEDLLLDALD-GIGHGYSCIELEWALQ-GREWM 149 (526) Q Consensus 77 ~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~-----~~~~~~i~~~ld-a~~~G~s~~Ei~w~~~-~g~~~ 149 (526) +++.....|.+..+...+..+++.-.+++....+.|-++. -+|..+...++. .+--|=.++=+.|... +|.-. T Consensus 69 av~~~~~~vVG~Gi~p~~~~~~~~~~~~ie~~w~~wa~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~~g~~~ 148 (495) T protein:vir:10 69 AVATWVAAAVGNGLTPRWRMKEQELRQELQELWGDWVNEADFDEVQSFYGLQALVVRTVINSGEAFVIKKPRPLSEGLSV 148 (495) T ss_pred HHHHHHHhhcCCCcccccCCchHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHHhCCceEEEEeecccCCCCcc Confidence 9999999999988776665443333444444445554332 247777776664 4557777776767543 34334 Q ss_pred EeeeeeecCceeE-------------------ecccCCce--EEeccCCCC---------ceeecCCCeEEEeecCCCCc Q lcl|Aclame:pro 150 PLAFHHRPQSWFQ-------------------LNPEDQNE--LRLRDNSPA---------GEALQPFGWIIHRPRARSGY 199 (526) Q Consensus 150 ~~~l~~r~~~~f~-------------------~~~~~~~~--l~~~~~~~~---------g~~lp~~k~i~~~~~~~~g~ 199 (526) +-+|..+++.++. ||..++.. .+.+...++ -+.+|.. .|+|.+....+. T Consensus 149 ~~~lqliepd~l~~~~~~~~~~~g~~i~~GIe~d~~Gr~vaY~i~~~hpgd~~~~~~~~~~~rvpA~-~vlH~f~~r~gQ 227 (495) T protein:vir:10 149 PLQLQIIEPDMLASDIPDETLPSGGYVKGGIRFSNGGKRKAYCFYRNHPAESSLIGDPVDTVWIKAE-HVLHVTVLTVRS 227 (495) T ss_pred ceEEEEechhhcCCCCCCCCCCCCCEEEeceEECCCCceEEEEEeecCCCcccccccccceeeechh-heEeccccCCCc Confidence 4455555554432 11111110 011111111 1235544 467777778888 Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCC--CC-----HHHHHHHHHHHHHhhcCeEEEecCCceE Q lcl|Aclame:pro 200 VARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPG--TA-----DEEKATLLRAVTGLGHAAAGIIPETMAI 272 (526) Q Consensus 200 p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~--~~-----~~e~~~l~~al~~~~~~~~~iip~~~~i 272 (526) .-|.++|..+...-.+..+.- ..+.-.....+-..+.|.+.+ .. .++.+.--.....+.......++.|.+| T Consensus 228 ~RGis~la~i~~l~~l~~y~d-ael~~a~i~A~~~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i 306 (495) T protein:vir:10 228 DAGAPWFQLLLRLNELDQYED-AELVRKKTAALFAAFIQEATADSTGGPTIGQPKRSKGGKRITGLNPGTLQYLQPGQEV 306 (495) T ss_pred ccCcchhHHHHHHHHhhHHHH-HHHHHHHHhhhheeeeecCCCccccccccCccccccCcccceecCCceeeecCCCCee Confidence 889988765443222222211 111111112222222222111 00 0111111123345677788889999999 Q ss_pred EEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH Q lcl|Aclame:pro 273 DFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDAR-QLAATLSRDLLWPLL 351 (526) Q Consensus 273 e~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~-~i~~~ln~~li~~l~ 351 (526) +|.+.+.. +..|..|.+..-+.|+..+ |-+-..-+++-.+.||+..-.-..-+...++.... ++...+.+-+..+++ T Consensus 307 ~~~~p~~p-~~~~~~f~~~~lr~iaagl-Gi~Ye~ltgD~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~~pi~~~~l 384 (495) T protein:vir:10 307 KFSNPADV-GTTYEPWLRYQLLSIAKGY-GITYEMLTGDLRGVNYSSIRAGLLEFRRLCQQVQHHMIIHQFCRPVGRWFM 384 (495) T ss_pred eeeCCCCC-CCCHHHHHHHHHHHHHhhc-CCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 99986533 3448999999999999986 33322222333334565544444334445544443 344444444444444 Q ss_pred H---hc----CCCCCC-cccceeEEe--cCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcc----- Q lcl|Aclame:pro 352 V---LN----RPGSPD-VRRAPRLVF--DLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLR----- 416 (526) Q Consensus 352 ~---~N----f~~~~~-~~~~p~~~~--~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~----- 416 (526) + ++ .++... ...+.+..+ ....-.|..+-+++....+++|+. |.+.+..+.|..+.+-.+++.. T Consensus 385 ~~a~l~G~i~~p~~~~~~~~~~~~~w~~p~~~~vDP~Ke~~A~~~~i~~G~~-s~~~~~a~~G~D~~~v~~q~a~e~~~~ 463 (495) T protein:vir:10 385 DFAVASGAVVIPDYLQRRRYYNRVSWRTPRWEEVDPLKKHLADLGDVRAGFA-PISDKQAERGYDMEELFDMISDANQLI 463 (495) T ss_pred HHHHHcCCCCCCCchhhhHhhhccccccCCccccChHHHHHHHHHHHHcCCC-CHHHHHHHcCCCHHHHHHHHHHHHHHH Confidence 3 12 221110 111222222 333446888888999999999984 4433333446543221111100 Q ss_pred -cCCC--cccccccccccccccccccccccccccc Q lcl|Aclame:pro 417 -SAAQ--PAILSRQHGQRVAALATIVGPRYGDQQA 448 (526) Q Consensus 417 -~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (526) ...- ...+....+ +++............ . T Consensus 464 ~~~Gl~~~~~p~~~~~--~~~~~~~~~~~~~~~-e 495 (495) T protein:vir:10 464 DEYDLRLDSDPRYVNG--SGAEQKSVMEAALNN-E 495 (495) T ss_pred HHcCCCCCCCCCcCCC--ccCCCCCCCCCCCCC-C Confidence 0000 000000000 000000000000100 0 No 139 >protein:vir:102602 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654999;genbank:gi:109392189;genbank:GeneID:4157224 Probab=98.81 E-value=4.1e-08 Score=61.11 Aligned_cols=397 Identities=12% Similarity=-0.004 Sum_probs=170.8 Q ss_pred ccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCC------CH-HHHHHHHHHHHhccHHHHHHHHHHHHHHh Q lcl|Aclame:pro 14 TQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQG------NL-QAQAELFMDMEERDAHLFAEMSKRKRAIL 86 (526) Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g------~~-~~~~~l~~~m~~~D~~v~s~l~~Rk~av~ 86 (526) .+.++... .+.-+.+.+..+..+ ..++.+-.+. ... .. ..+..+...+ ......-+++.....+. T Consensus 1 ~~~~t~~~--~~~~l~~~~~~~~~r---~~~l~~Yy~g-~~~i~~~~~~~~~~~~~~~~k~--~~n~~~~ivd~~~~~l~ 72 (456) T protein:vir:10 1 MTASTPAE--WLPVLTKRIDDGMSR---VRLLARYSNG-DAPLPELTRNTSAAWRSFQREA--RTNWGLMVRDSVADRII 72 (456) T ss_pred CCCCCHHH--HHHHHHHHHHHHHHH---HHHHHHHHhc-CCCchhcCcccChhhhhhhhhh--hcchHHHHHHHHHhhhc Confidence 11111100 011111111111000 0111111110 000 00 0000100000 12233444555555566 Q ss_pred cCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCce--eEe Q lcl|Aclame:pro 87 GLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQSW--FQL 163 (526) Q Consensus 87 ~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~--f~~ 163 (526) +.++++...++. ..+ +.+.+++... +|+....+++ +|.-||.+ ++++|...+|...+.. .+|+. ..+ T Consensus 73 ~~~~~~~~~~d~-~~~----~~~~~i~~~N-~~d~~~~~~~~~a~i~G~a-y~~v~~d~~g~~~i~~---~~p~~~~~i~ 142 (456) T protein:vir:10 73 PNGITVGGSADS-DLA----LRARRIWRDN-RMDSVCKQWVKYGLDFGES-YLTCWRRDDGTATITA---DSPETMVVSV 142 (456) T ss_pred cCCeecCCCCCc-chH----HHHHHHHHhc-ChhhHHHHHHHHHhhcCee-EEEEeeCCCCceEEEE---EccceeEEEE Confidence 677766432222 222 2344445443 4666666664 78889997 4788976666543322 22221 111 Q ss_pred cccCCceE----Eec-----------------------------cCCC------Cceee-----c-CCCeEEEeecCCCC Q lcl|Aclame:pro 164 NPEDQNEL----RLR-----------------------------DNSP------AGEAL-----Q-PFGWIIHRPRARSG 198 (526) Q Consensus 164 ~~~~~~~l----~~~-----------------------------~~~~------~g~~l-----p-~~k~i~~~~~~~~g 198 (526) +...+..+ ++. ..+. .+... + ...++... ... T Consensus 143 d~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv---~~~ 219 (456) T protein:vir:10 143 DPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVV---VYQ 219 (456) T ss_pred cCCCCcceEEEEEEEEecCCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEE---Eec Confidence 21111000 000 0000 00000 0 01111111 145 Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCC---CHHHHHHH-HHHHHHhhcCeEEEecCCceEEE Q lcl|Aclame:pro 199 YVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGT---ADEEKATL-LRAVTGLGHAAAGIIPETMAIDF 274 (526) Q Consensus 199 ~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~---~~~e~~~l-~~al~~~~~~~~~iip~~~~ie~ 274 (526) |+.|.|.+..+....=--...+.+.+...+-|..|.++.+-.... .+++.+.+ ...+-....+....+|.+.+|.. T Consensus 220 N~~g~gd~e~vi~liDa~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~q 299 (456) T protein:vir:10 220 NPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWE 299 (456) T ss_pred CCCCCchhhhhHHHHHHHHHHHHHHHHHHHHhhhHhHhhhccCcccccccccccccchhhhhhhhccccccCCCCcceEE Confidence 788999998876554444455666677888888887776531111 01111111 01111223344555678877654 Q ss_pred eecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 275 QQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLN 354 (526) Q Consensus 275 ~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~N 354 (526) +. ..+...|...++.+-.+|+..---+........++.+.-|+ +....-....+..-.+.+...|. ++++.++.+. T Consensus 300 ~~--~~~~~~~~~~l~~~i~~~~~~s~~p~~~~~~~~~N~Sg~Ai-~~~~~~l~~k~~~~~~~f~~~l~-~~~rl~~~~~ 375 (456) T protein:vir:10 300 SQ--ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGA-HNIEKGFLFKCEDRLSIAKIGLE-AILVKALQIE 375 (456) T ss_pred ec--ccChhHHHHHHHHHHHHHHhccCCChHHhcccccChHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhc Confidence 43 34556688888888888876542221111100011111122 22222333444445566666674 4666666655 Q ss_pred CCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccc Q lcl|Aclame:pro 355 RPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAA 434 (526) Q Consensus 355 f~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 434 (526) ... . ..-.++.|....+.++.+.|+++.+|+.+|+ ++.+-+++.+|+.+.+-.+........... . .+..... T Consensus 376 g~~--~-~~~~~v~w~~~~~~~~~~~ada~~kl~~~gi-~~~~~~~~~lg~~~~~i~~~e~er~~~e~~--~-~~~~~~~ 448 (456) T protein:vir:10 376 GES--V-EDTVDVSFESPDRVTLGEKYSAASLAKAAGE-SWASIRRNILNYNADQIKQDDLDRAREQIT--L-FAGNPVQ 448 (456) T ss_pred CCC--c-ccceeEEecCCCCcCHHHHHHHHHHHHHcCC-ChHHHHHhhCCCCHHHHHHHHHHHHHHHHH--H-Hhhhhhh Confidence 322 1 1234677878888899999999999999998 777777888898643211111100000000 0 0000000 Q ss_pred cccccccc Q lcl|Aclame:pro 435 LATIVGPR 442 (526) Q Consensus 435 ~~~~~~~~ 442 (526) .+...++. T Consensus 449 ~~~~~~~~ 456 (456) T protein:vir:10 449 RPQEDGSR 456 (456) T ss_pred cCCCCCCC Confidence 00000000 No 140 >protein:vir:105819 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655764;genbank:gi:109522087;genbank:GeneID:4157627 Probab=98.81 E-value=4.1e-08 Score=61.11 Aligned_cols=397 Identities=12% Similarity=-0.004 Sum_probs=170.8 Q ss_pred ccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCC------CH-HHHHHHHHHHHhccHHHHHHHHHHHHHHh Q lcl|Aclame:pro 14 TQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQG------NL-QAQAELFMDMEERDAHLFAEMSKRKRAIL 86 (526) Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g------~~-~~~~~l~~~m~~~D~~v~s~l~~Rk~av~ 86 (526) .+.++... .+.-+.+.+..+..+ ..++.+-.+. ... .. ..+..+...+ ......-+++.....+. T Consensus 1 ~~~~t~~~--~~~~l~~~~~~~~~r---~~~l~~Yy~g-~~~i~~~~~~~~~~~~~~~~k~--~~n~~~~ivd~~~~~l~ 72 (456) T protein:vir:10 1 MTASTPAE--WLPVLTKRIDDGMSR---VRLLARYSNG-DAPLPELTRNTSAAWRSFQREA--RTNWGLMVRDSVADRII 72 (456) T ss_pred CCCCCHHH--HHHHHHHHHHHHHHH---HHHHHHHHhc-CCCchhcCcccChhhhhhhhhh--hcchHHHHHHHHHhhhc Confidence 11111100 011111111111000 0111111110 000 00 0000100000 12233444555555566 Q ss_pred cCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCce--eEe Q lcl|Aclame:pro 87 GLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQSW--FQL 163 (526) Q Consensus 87 ~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~--f~~ 163 (526) +.++++...++. ..+ +.+.+++... +|+....+++ +|.-||.+ ++++|...+|...+.. .+|+. ..+ T Consensus 73 ~~~~~~~~~~d~-~~~----~~~~~i~~~N-~~d~~~~~~~~~a~i~G~a-y~~v~~d~~g~~~i~~---~~p~~~~~i~ 142 (456) T protein:vir:10 73 PNGITVGGSADS-DLA----LRARRIWRDN-RMDSVCKQWVKYGLDFGES-YLTCWRRDDGTATITA---DSPETMVVSV 142 (456) T ss_pred cCCeecCCCCCc-chH----HHHHHHHHhc-ChhhHHHHHHHHHhhcCee-EEEEeeCCCCceEEEE---EccceeEEEE Confidence 677766432222 222 2344445443 4666666664 78889997 4788976666543322 22221 111 Q ss_pred cccCCceE----Eec-----------------------------cCCC------Cceee-----c-CCCeEEEeecCCCC Q lcl|Aclame:pro 164 NPEDQNEL----RLR-----------------------------DNSP------AGEAL-----Q-PFGWIIHRPRARSG 198 (526) Q Consensus 164 ~~~~~~~l----~~~-----------------------------~~~~------~g~~l-----p-~~k~i~~~~~~~~g 198 (526) +...+..+ ++. ..+. .+... + ...++... ... T Consensus 143 d~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv---~~~ 219 (456) T protein:vir:10 143 DPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVV---VYQ 219 (456) T ss_pred cCCCCcceEEEEEEEEecCCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEE---Eec Confidence 21111000 000 0000 00000 0 01111111 145 Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCC---CHHHHHHH-HHHHHHhhcCeEEEecCCceEEE Q lcl|Aclame:pro 199 YVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGT---ADEEKATL-LRAVTGLGHAAAGIIPETMAIDF 274 (526) Q Consensus 199 ~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~---~~~e~~~l-~~al~~~~~~~~~iip~~~~ie~ 274 (526) |+.|.|.+..+....=--...+.+.+...+-|..|.++.+-.... .+++.+.+ ...+-....+....+|.+.+|.. T Consensus 220 N~~g~gd~e~vi~liDa~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~q 299 (456) T protein:vir:10 220 NPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWE 299 (456) T ss_pred CCCCCchhhhhHHHHHHHHHHHHHHHHHHHHhhhHhHhhhccCcccccccccccccchhhhhhhhccccccCCCCcceEE Confidence 788999998876554444455666677888888887776531111 01111111 01111223344555678877654 Q ss_pred eecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 275 QQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLN 354 (526) Q Consensus 275 ~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~N 354 (526) +. ..+...|...++.+-.+|+..---+........++.+.-|+ +....-....+..-.+.+...|. ++++.++.+. T Consensus 300 ~~--~~~~~~~~~~l~~~i~~~~~~s~~p~~~~~~~~~N~Sg~Ai-~~~~~~l~~k~~~~~~~f~~~l~-~~~rl~~~~~ 375 (456) T protein:vir:10 300 SQ--ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGA-HNIEKGFLFKCEDRLSIAKIGLE-AILVKALQIE 375 (456) T ss_pred ec--ccChhHHHHHHHHHHHHHHhccCCChHHhcccccChHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhc Confidence 43 34556688888888888876542221111100011111122 22222333444445566666674 4666666655 Q ss_pred CCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccc Q lcl|Aclame:pro 355 RPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAA 434 (526) Q Consensus 355 f~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 434 (526) ... . ..-.++.|....+.++.+.|+++.+|+.+|+ ++.+-+++.+|+.+.+-.+........... . .+..... T Consensus 376 g~~--~-~~~~~v~w~~~~~~~~~~~ada~~kl~~~gi-~~~~~~~~~lg~~~~~i~~~e~er~~~e~~--~-~~~~~~~ 448 (456) T protein:vir:10 376 GES--V-EDTVDVSFESPDRVTLGEKYSAASLAKAAGE-SWASIRRNILNYNADQIKQDDLDRAREQIT--L-FAGNPVQ 448 (456) T ss_pred CCC--c-ccceeEEecCCCCcCHHHHHHHHHHHHHcCC-ChHHHHHhhCCCCHHHHHHHHHHHHHHHHH--H-Hhhhhhh Confidence 322 1 1234677878888899999999999999998 777777888898643211111100000000 0 0000000 Q ss_pred cccccccc Q lcl|Aclame:pro 435 LATIVGPR 442 (526) Q Consensus 435 ~~~~~~~~ 442 (526) .+...++. T Consensus 449 ~~~~~~~~ 456 (456) T protein:vir:10 449 RPQEDGSR 456 (456) T ss_pred cCCCCCCC Confidence 00000000 No 141 >protein:vir:96738 Length: 505 # NCBI annotation: putative phage-related protein # Family: family:all:47 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039817;genbank:gi:126010916;genbank:GeneID:5076248 Probab=98.79 E-value=4.8e-08 Score=60.72 Aligned_cols=429 Identities=10% Similarity=0.002 Sum_probs=198.6 Q ss_pred CCe------eecCCCCccCccccchh--hhhh--hhhhhhhhhhhhh--cccCHHHHHHHHHcccCCCHHHHHHHHHHHH Q lcl|Aclame:pro 1 MAQ------IVDVYGNPIRTQQLREP--QTSR--LAGLAKEFAQHPA--KGLTPAKLARILVEAEQGNLQAQAELFMDME 68 (526) Q Consensus 1 m~~------~~~~~g~p~~~~~~~~~--~~~~--~~~~~~~~~~~~~--~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~ 68 (526) |.+ ++|....|......... .... -++..+....|.. ....+.. .+ .++......-.+++. T Consensus 1 ~~r~~~~~~~~dr~i~~~~~~~~~~~~~~~~~y~aa~~~r~~~~w~~~~~~~s~~~--~i-----~~~~~~lr~RaRdL~ 73 (505) T protein:vir:96 1 MKRAEKKPSLAQRMVNWAWYRYVEPQKNAARAFEAARRDRLGKAWLRRASRLSADE--EI-----YADLASLVQRAREQS 73 (505) T ss_pred CCCCccccchhhcccchhhhhhHHHHHHhhhhcccccCCCccccccCCCCCCChHH--HH-----HHHHHHHHHHHHHHH Confidence 332 45554444322111100 0000 0111111111210 1111111 11 223444556667778 Q ss_pred hccHHHHHHHHHHHHHHhc-CCceEecCCCC--CHHHHHHHHHHHHHHhcC-----------cCHHHHHHHHHH-hhhhc Q lcl|Aclame:pro 69 ERDAHLFAEMSKRKRAILG-LDWAVEPPRNA--SAAEKADADYLHELLLDL-----------EGLEDLLLDALD-GIGHG 133 (526) Q Consensus 69 ~~D~~v~s~l~~Rk~av~~-~~w~v~~~~~~--~~~~~~~a~~v~~~l~~~-----------~~~~~~i~~~ld-a~~~G 133 (526) ..++++.+++++....|.+ ..+.+.+.-+. ...+++.++.|+..+... -+|..+...++- .+--| T Consensus 74 rNn~~a~~av~~~~~nvVG~~Gi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~~~D~~g~~~f~~lq~l~~r~~~~dG 153 (505) T protein:vir:96 74 INNPYAKRFYQLLKNNVIGPKGMTFQSRVKRRNGKPDDRANTLIEGNWQQWIKKGNCDVTGRYHFVTLLHLWMETLARDG 153 (505) T ss_pred hcChHHHHHHHHHHHHhcCCCcceeeecCCcccccccHHHHHHHHHHHHHhcCCcCcceeccCCHHHHHHHHHHHHhhCC Confidence 8999999999999999998 47777764221 112333444444443221 136666665554 45567 Q ss_pred ceeeeEEEeecCCeeEEeeeeeecCceeE------------------ecccCCce--EEeccCCC-----------Ccee Q lcl|Aclame:pro 134 YSCIELEWALQGREWMPLAFHHRPQSWFQ------------------LNPEDQNE--LRLRDNSP-----------AGEA 182 (526) Q Consensus 134 ~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~------------------~~~~~~~~--l~~~~~~~-----------~g~~ 182 (526) =+++-+.|.. ++ -.+-+|...++.++. ||..++.. .+.....+ ...- T Consensus 154 E~f~~~~~~~-~~-~~~~~lqliepd~l~~~~n~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~hPgd~~~~~~~~~~~~~r 231 (505) T protein:vir:96 154 EVLVREHRGY-PN-KWGYALQILECDRLDLNYNADLQNGNRIRMSIELDAWERPVAYHLLVNHPGDNSYCYHYAGQTYER 231 (505) T ss_pred ceEEEEeecC-CC-CcceEEEEechhhcCCCCCcccCCcCeEEeceEECCCCceEEEEEeecCCCccccccccccccccc Confidence 6666555533 22 233345555444332 22211110 01111111 1111 Q ss_pred ecCCCeEEEeec-CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCC-HHHHHHHHHHHHHhhc Q lcl|Aclame:pro 183 LQPFGWIIHRPR-ARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTA-DEEKATLLRAVTGLGH 260 (526) Q Consensus 183 lp~~k~i~~~~~-~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~-~~e~~~l~~al~~~~~ 260 (526) +|. ..|+|.+. ...+..-|.+.|..+.....-........+.-...-.+=..+.|.+++.. ....+.--..+..+.. T Consensus 232 vpa-~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~l~p 310 (505) T protein:vir:96 232 VPA-DEIIHTFVPWRPHQNRGIPWTHASMVELHHIGEYRKSEMIAAELGAKKVGFYEQDPEAYDQPPEDDQGEIVEEVEA 310 (505) T ss_pred cCH-hHhhhhhcccCCccccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCccCCCccccccCccccccCC Confidence 333 34566655 45778889999888876655444444444444444333333444433221 1111111223456778 Q ss_pred CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 261 AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAA 340 (526) Q Consensus 261 ~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~ 340 (526) ..+..++.|.+|+|.+.+.. +..|..|.+..-+.|+..+ |-+-.+-+++-.+.||+.+-.-..-+...++.....+.. T Consensus 311 G~i~~L~pGe~i~~~~~~~p-~~~~~~f~~~~lr~iaagl-gi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~~~~ 388 (505) T protein:vir:96 311 GTYQLLPYGIRFKEHKIDHP-HTNFGAFVKSSLRGVAAGM-GPAYNRLAHDLEGVNFSSLRSGELDERDLYKLLQFFVVT 388 (505) T ss_pred ceeeecCCCCeeeeeCCCCC-CCCHHHHHHHHHHHHHhhc-CCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHH Confidence 88889999999999986543 3458999999999999996 433222222222345655444333344444444445554 Q ss_pred HHHHHHHHHHHHh-------cCCCCCCcccceeEEec--CccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCcc Q lcl|Aclame:pro 341 TLSRDLLWPLLVL-------NRPGSPDVRRAPRLVFD--LREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKN 411 (526) Q Consensus 341 ~ln~~li~~l~~~-------Nf~~~~~~~~~p~~~~~--~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~ 411 (526) .+-+-+..++++. +.++. .+..+.+..+. ...-.|..+-+++....+++|+. |.+.+....|..+.+-. T Consensus 389 ~~~~pi~~~~l~~a~l~G~i~~p~~-~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~-t~~~~~a~~G~D~~~v~ 466 (505) T protein:vir:96 389 ELLERVAGNLISMSLLTQALPLNMV-DIDRLSQYAFQPRGWDWVDPAKDSKAHSESIKNRTR-SRSSIIRAAGDDPEDVF 466 (505) T ss_pred HHHHHHHHHHHHHHHHcCCcCCCCc-cchhhceeeeccCCccccChHHHHHHHHHHHHcCCC-CHHHHHHHcCCCHHHHH Confidence 4444444433321 22211 12223333332 23346888889999999999984 44444444576443222 Q ss_pred chhcc------cCC-CcccccccccccccccccccccccccccchHH Q lcl|Aclame:pro 412 EPVLR------SAA-QPAILSRQHGQRVAALATIVGPRYGDQQALDK 451 (526) Q Consensus 412 e~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (526) +++.. ... .+..++.... ......+..... |+ T Consensus 467 ~q~a~e~~~~~~~Gl~~~~~~~~~~-----~~~~~~~~~~~~---d~ 505 (505) T protein:vir:96 467 DEIAWEEQLMRDKGVNPTPPEQESK-----DATTDEEDDSAS---DD 505 (505) T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCC-----CCCCCCCCCCCC---CC Confidence 11110 000 0000000000 000000000011 11 No 142 >protein:vir:99072 Length: 479 # NCBI annotation: gp27 # Family: family:all:524 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655892;genbank:gi:109521464;genbank:GeneID:4158037 Probab=98.78 E-value=5.2e-08 Score=60.50 Aligned_cols=397 Identities=10% Similarity=-0.011 Sum_probs=159.0 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHH-----cc--cCCCHHHHHHHHH-------- Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILV-----EA--EQGNLQAQAELFM-------- 65 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-----~a--~~g~~~~~~~l~~-------- 65 (526) |=. .|-..||+..+...+. .- ..+.+..+...|+ T Consensus 1 ~~~-------------------------------~p~~~l~~~~~~~~~~~~l~~~~~~~~~r~~~~~~YY~g~~~i~~~ 49 (479) T protein:vir:99 1 MID-------------------------------LPDEDLSSEGLAKYLETKVFPKMNTECERLDDFEAWTKNGQEVPDL 49 (479) T ss_pred Ccc-------------------------------CCcccCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCccccc Confidence 332 2222222222221111 00 0000111111111 Q ss_pred ---------HHHh---ccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-Hhhhh Q lcl|Aclame:pro 66 ---------DMEE---RDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGH 132 (526) Q Consensus 66 ---------~m~~---~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~ 132 (526) .+.. .-...+-++++....+.--.+ ..+ +++ ..+.+.+++... .|+.....++ ++.-| T Consensus 50 ~~~~~~~~~~~~~~~~~~n~~~~iVd~~~~~l~~~gf--~~~-d~~-----~~~~~~~i~~~N-~~d~~~~~~~~~a~~~ 120 (479) T protein:vir:99 50 ATRHKNKEREVLQQLSRKPWMGLMVNSFAQQLIVDGY--RKT-GTN-----ENAKGWDTWRLN-QMDKQQFWLNRAVLTF 120 (479) T ss_pred ccccCChhHHHHHHHhhcCcHHHHHHHHHhhcccccc--cCC-Cch-----hhHHHHHHHHhc-ChhHHHHHHHHHHhhc Confidence 0000 001111122221111111122 211 111 122345555543 4777777765 78999 Q ss_pred cceeeeEEEee-----cCCeeEEeeeeeecCceeE--ec-ccCCc-------------e-E-------EeccCCCCce-- Q lcl|Aclame:pro 133 GYSCIELEWAL-----QGREWMPLAFHHRPQSWFQ--LN-PEDQN-------------E-L-------RLRDNSPAGE-- 181 (526) Q Consensus 133 G~s~~Ei~w~~-----~~g~~~~~~l~~r~~~~f~--~~-~~~~~-------------~-l-------~~~~~~~~g~-- 181 (526) |. .++++|.. ..|... +..++|+... |+ +..+. . + .+...++... T Consensus 121 G~-af~~v~~~~~~~d~~g~~~---i~~~~p~~~~~iydd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (479) T protein:vir:99 121 GY-AFIKVTSGISPLDGTTVAR---IKCIDPRDAFAIWEDPYWDEWPKYLLERQPNGQYWWWTEEDYSIFEFKQGKFIYR 196 (479) T ss_pred Cc-eEEEEecCCCCcCCCCceE---EEEechhheEEEecCCcccceeeEEEeecCceeEEEEecceEEEEEecCCceeec Confidence 97 45677731 122222 2222222111 11 00000 0 0 0000000000 Q ss_pred -e----ecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEec--CCCCCHHHHHHHHHH Q lcl|Aclame:pro 182 -A----LQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKY--PPGTADEEKATLLRA 254 (526) Q Consensus 182 -~----lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~--~~~~~~~e~~~l~~a 254 (526) . +...-++.+.++... .++|.|.+..+....=-=...+.......+.|+.|.++.+- .......+.. T Consensus 197 ~~~~h~~g~vPvv~f~n~~~~-~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~----- 270 (479) T protein:vir:99 197 ETVSHDYGHIPFVRYVNVMDL-RGVCYGDVEPLVTVAKAIDKTGLDILLVQHHQSFQIRWATGLMLPEGANADQE----- 270 (479) T ss_pred cccccCCCCcceEEeecCCCc-CcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcCCCcccccccchh----- Confidence 0 111224555655544 45799988876544433445677777888999999877552 1111111111 Q ss_pred HHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 255 VTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASD 334 (526) Q Consensus 255 l~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad 334 (526) ...+..+. ++...+.++++.+-...+...|...++.+-.+|+....-+.-..+. .++.+.-|+. ....-....++.- T Consensus 271 ~~~~~~~~-i~~~~~~~~~~~q~~~~~~~~~~~~l~~~i~~i~~~t~~p~~~~g~-~~n~Sg~Al~-~~~~~l~~ka~~~ 347 (479) T protein:vir:99 271 KMRFAQES-MLISQNEKASFGAIPAAPLDGLLNAYKESLLEFLALAQLPPHIAGQ-IVNVAADALA-AGTRQTMQKLFEK 347 (479) T ss_pred cccccccc-ceeecCCCceEEEecccchHHHHHHHHHHHHHHhccCCCCHHHccc-ccchHHHHHH-HHHHHHHHHHHHH Confidence 11222233 3334556677776555556667777777777777543212111110 1111112222 2233333444444 Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHh-CCCCCCccch Q lcl|Aclame:pro 335 ARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKL-GIPQPAKNEP 413 (526) Q Consensus 335 ~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~-Glp~~~~~e~ 413 (526) .+.+...|. ++++.++.+..........--.+.|......++.+.++.+.||+.+|. ++.+.+.+.+ |+..++-... T Consensus 348 ~~~f~~al~-~~~~l~~~~~~~~~~~~~~~i~~~w~~~~~~s~~~~ad~~~kl~~ag~-is~et~l~~l~gv~~~~~e~~ 425 (479) T protein:vir:99 348 QATWKASHN-QTMRLVNKIEGRTEEATDLDFTITWQDVTIQSLAQFADAWAKMVESLK-IPAEGVWDMIPNLDQSTVNGW 425 (479) T ss_pred HHHHHHHHH-HHHHHHHHHcCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHhcCC-CCHHHHHHhcCCCCHHHHHHH Confidence 556666675 356655555432211111112455656667788999999999999886 8888888877 8865431110 Q ss_pred --hcc-------------cCCCcccccccccccccccccccccccccccchHHHHHHHHH Q lcl|Aclame:pro 414 --VLR-------------SAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALADLPA 458 (526) Q Consensus 414 --~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (526) ... ..+.++.........+....+...+ .....+..... T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 479 (479) T protein:vir:99 426 KEIYDREGDFGKYMRKLQNGPDPAEQRGGPNGATNMQQANNKT------GEPASLNKSGA 479 (479) T ss_pred HHHHHHHHHHHHHHHHHhcccCcccccCCCCCCCCCCCCCCCC------cchhccCCCCC Confidence 000 0000000000000000000000000 00000000000 No 143 >protein:vir:99522 Length: 470 # NCBI annotation: putative protein # Family: family:all:125 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958533;genbank:gi:41179315;genbank:GeneID:2717160 Probab=98.77 E-value=5.6e-08 Score=60.33 Aligned_cols=408 Identities=11% Similarity=0.039 Sum_probs=185.7 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHH---HHHHHH---H------- Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQ---AELFMD---M------- 67 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~---~~l~~~---m------- 67 (526) |. |-+|+-++...-. .|....-..+|++.+...++....-...++ .++|+- + T Consensus 1 ~~---~~~~~~~~~~~~~------------~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~l~~Yy~g~~~i~~~~~~~ 65 (470) T protein:vir:99 1 MK---DINYGRDKVTGNS------------SFIFPKGEKLTSNELLGFIAYNETVLKPRYRENMKLYLGKHKILTAPEKE 65 (470) T ss_pred Cc---cccCCcccccCCc------------eEEeCCCCCcCHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccCcccc Confidence 65 3344333222110 000000001222222222221111001111 111110 0 Q ss_pred -----HhccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEE Q lcl|Aclame:pro 68 -----EERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEW 141 (526) Q Consensus 68 -----~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w 141 (526) ........-++.....-+.+.+..+...++. +..+.+.+++.+. +|...+.++. ++.-||.+ .+++| T Consensus 66 ~~~~~ki~~n~~~~Ivd~~~~~l~g~p~~~~~~~d~-----~~~~~l~~~~~~n-~~~~~~~~~~~~~~~~G~~-~~~v~ 138 (470) T protein:vir:99 66 TGADNRIVVNSAKYVVDVYNGYFCGIEPKLALLNDS-----SKIDEIARWNRQE-NFFDTINEISKQCDIFGRS-IASIY 138 (470) T ss_pred cCCcceeecchHHHHHHHHhhhhccCCeeEeeCCch-----hHHHHHHHHHHhc-CHhHHHHHHHHHHHhcCee-EEEEE Confidence 0012344555666666777777777643322 2234455555553 4777766666 68889975 56777 Q ss_pred eecCCeeEEeeeeeecCcee--EecccCCc----------------------------eEEeccCCCC------ceeecC Q lcl|Aclame:pro 142 ALQGREWMPLAFHHRPQSWF--QLNPEDQN----------------------------ELRLRDNSPA------GEALQP 185 (526) Q Consensus 142 ~~~~g~~~~~~l~~r~~~~f--~~~~~~~~----------------------------~l~~~~~~~~------g~~lp~ 185 (526) ...+|...+. ..+|... .++..... ...+...+.. +....+ T Consensus 139 ~d~dg~~~i~---~~~p~~~~~i~d~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (470) T protein:vir:99 139 QGEDARPHLM---YSSPNHAFIIYDDTVQRQPLAFVHYQIDNSNNWTDAYGVIQYADKFYKFKGYDIEEDTNAAGYAINP 215 (470) T ss_pred eCCCCeEEEE---EEccceeEEEEcCCCCcceEEEEEEEEEecCCeeEEEEEEEecCeEEEEEecccccccccccccccC Confidence 5555554332 2333221 11111100 0000000000 001112 Q ss_pred CCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHhhcCeEEE Q lcl|Aclame:pro 186 FGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGHAAAGI 265 (526) Q Consensus 186 ~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~~~~~i 265 (526) .+.+-+.+ -..++.|.|.+..+....=-=...+..++..++.|..|+++.+--....++.. +.+..+..+..+. T Consensus 216 ~g~vPvv~--~~n~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~~~~~~~i~g~~~~~~~~g----~~~~~~~~~~~~~ 289 (470) T protein:vir:99 216 YGLVPAVE--FFENEERQGIFDSIKTLINALDKVISQKANQVEYFDNAYMYMIGFKLPEDDEG----NPKFDFKNNRVLY 289 (470) T ss_pred CCccceEe--ecCCCCCCcchHhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCccccccc----chhhhhhhcceee Confidence 22221111 13467899999886655555555778888899999999998774322222211 2234455555555 Q ss_pred ec-----CCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 266 IP-----ETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAA 340 (526) Q Consensus 266 ip-----~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~ 340 (526) +| .+.++++++. ......++..++.+.+.|...-.+..++.+...|. .|...-+....-....+..-.+.+.. T Consensus 290 ~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n-~Sg~Ai~~~~~~l~~k~~~~~~~~~~ 367 (470) T protein:vir:99 290 VSQLDPDTNPQIGFIAK-PDADQMQENLIQHLTDFIFMMAMVPNIQDKNFAGN-SSGVALQYKLFAMKNKADSKERKFDK 367 (470) T ss_pred ecCCCCCCCCcceEEee-cCChHHHHHHHHHHHHHHHHHhCCccccccccccC-chHHHHHHHHHHHHHHHHHHHHHHHH Confidence 55 3456788863 34556788899999999988866655544322111 12111111111222334444455666 Q ss_pred HHHHHHHHHHHHh-cCCCCC-CcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccC Q lcl|Aclame:pro 341 TLSRDLLWPLLVL-NRPGSP-DVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSA 418 (526) Q Consensus 341 ~ln~~li~~l~~~-Nf~~~~-~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~ 418 (526) .|. ++++.++.+ +..+.. .......+.|....+.|..+.++.+.+++ |+ +|.+.+.+.++.-.+. +++..-. T Consensus 368 ~l~-~~~~li~~~~~~~~~~~~~~~~i~v~f~~~~p~~~~e~a~~~~kl~--gi-is~et~l~~l~~vd~~--~E~eri~ 441 (470) T protein:vir:99 368 SLM-QLYRIVLATLFNNKQDQELWSELDFKFTRNLPEDMASAIDNAKNAE--GI-VSKKTQLGMIPDIEPD--AEMKQIA 441 (470) T ss_pred HHH-HHHHHHHHHHhccCCcccccccceEEeCCCCCcCHHHHHHHHHHHh--cc-CCHHHHHHhCCCCCHH--HHHHHHH Confidence 664 455555543 222211 11234578888888999999999999986 66 8999998888764322 1111100 Q ss_pred CCccccccccccccccccccccccccccc Q lcl|Aclame:pro 419 AQPAILSRQHGQRVAALATIVGPRYGDQQ 447 (526) Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (526) .........................+..+ T Consensus 442 ~E~~~~~~~~~~~~~~~d~~~~d~~~ee~ 470 (470) T protein:vir:99 442 KEKADAIKQTQQLSMPIDILKRDNNAEEE 470 (470) T ss_pred HHHHHHHHHHHhhcCCCCcCCCCCCccCC Confidence 00000000000000000000000000111 No 144 >protein:vir:97447 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240744;genbank:gi:66396413;genbank:GeneID:5133803 Probab=98.75 E-value=6.5e-08 Score=59.99 Aligned_cols=405 Identities=10% Similarity=-0.006 Sum_probs=182.4 Q ss_pred CCeeecC-CCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHH------HH----- Q lcl|Aclame:pro 1 MAQIVDV-YGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMD------ME----- 68 (526) Q Consensus 1 m~~~~~~-~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~------m~----- 68 (526) |=.++.. ...|+..+....- . +...+++..+...+.... ....++..+.+. +. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~-------------~~~~~~~~~i~~~i~~~~-~~~~~~~~~~~YY~g~~~i~~~~~~ 65 (474) T protein:vir:97 1 MFNIIRMPWDKPYGEEVVEQL-K-------------PQFETQEEMIVRLIDDHR-KQLDKITVGQRYYDKDNDIVKQMKK 65 (474) T ss_pred CcccccccCCCchhhHHHHhh-h-------------hcccCHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchhcccch Confidence 4433332 2333321111100 0 000111111111111111 011111111110 00 Q ss_pred ----------h-----ccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-Hhhhh Q lcl|Aclame:pro 69 ----------E-----RDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGH 132 (526) Q Consensus 69 ----------~-----~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~ 132 (526) . ..+...-.+.+...-+.+.+..+... ++...++++.++.+ +|...+.++. ++.-| T Consensus 66 ~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~~l~g~p~~~~~~------d~~~~~~l~~~~~n--~~~~~~~e~~~~~~~~ 137 (474) T protein:vir:97 66 VDVHGNIDYDKPDWRITTNFHQNLVDQKVSYVASKPVTYSCE------DENVLKVIHDVLDT--RWDNKLIDILTATSNK 137 (474) T ss_pred hccccccccccCcceeecchHHHHHHHHHhhhhcCCceeccC------cHHHHHHHHHHHhc--cHHHHHHHHHHHHhhc Confidence 0 12334445555556667777776532 23455677777653 4777766665 68889 Q ss_pred cceeeeEEEeecCCeeEEeeeeeecCceeE--ecccC-Cc-----------------------eEEeccCCCCce----- Q lcl|Aclame:pro 133 GYSCIELEWALQGREWMPLAFHHRPQSWFQ--LNPED-QN-----------------------ELRLRDNSPAGE----- 181 (526) Q Consensus 133 G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~--~~~~~-~~-----------------------~l~~~~~~~~g~----- 181 (526) |.+ .+++|...+|...+. ..+|..+. |+... +. ...++..+.... T Consensus 138 G~~-~~~~~~d~~~~~~i~---~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~ 213 (474) T protein:vir:97 138 GID-WLQVYINENGEMKLF---RVPAEQAIPIWVDKEREELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYY 213 (474) T ss_pred Cce-EEEEEecCCCeeEEE---EEcccceEEEEcCCCCCceEEEEEEEEecCeEEEEEEeCCeEEEEEEcCCcccccccc Confidence 974 567776555654432 23322111 11110 00 000110000000 Q ss_pred ---------eecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHH Q lcl|Aclame:pro 182 ---------ALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLL 252 (526) Q Consensus 182 ---------~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~ 252 (526) ...+...+-+.+ -..|++|.|.+..+....=--...+..++..++.++.|+++.+--.+...++ T Consensus 214 ~~~~~~~~~~~~~~g~vPvv~--~~nn~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~~~~~lv~~g~~~~~~~~----- 286 (474) T protein:vir:97 214 GANHVQSHFSNGNWGRVPFIA--FKNNPEEVSDIWMYKSIIDAIDKRLSDAQNMFDESVELIYILKGYEGEDLEE----- 286 (474) T ss_pred CcCcccccccccCCCccceEE--ecCCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccchh----- Confidence 000111111111 1347889999988665555556678899999999999999987543332221 Q ss_pred HHHHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHH Q lcl|Aclame:pro 253 RAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLA 332 (526) Q Consensus 253 ~al~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ 332 (526) ...++.....+.++.+.++++++. ..+...++..++.+.+.|...-.+..++.+...|+.+.-|+. ....-....+. T Consensus 287 -~~~~~~~~~~i~~~~~~~~~~l~~-~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~-~~~~~l~~k~~ 363 (474) T protein:vir:97 287 -FMRGLKYYKAINVDGDGGVETIQV-EVPVSSTKEYIDLMRVYIMEFGQGVDFQTDKFGSAPSGIALK-FLYGNLDLKAN 363 (474) T ss_pred -hhhhhhccceeeccCCCceeEEee-cCCHHHHHHHHHHHHHHHHHHhCccccCccccccccHHHHHH-HHHHHHHHHHH Confidence 233455667778899999999974 345667888999999998887655545443221111111111 11111222233 Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCC-CCCCcc Q lcl|Aclame:pro 333 SDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGI-PQPAKN 411 (526) Q Consensus 333 ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Gl-p~~~~~ 411 (526) .-.+.+...|. ++++.++.+....... .--.+.|....+.|....++.+. ..|+ +|.+.+.+.++. +.+... T Consensus 364 ~k~~~~~~~l~-~~~~li~~~~~~~~d~--~~i~v~f~~~~p~~~~e~a~~~~---~~g~-iS~et~l~~l~~v~D~~~E 436 (474) T protein:vir:97 364 KLKNKATVAIQ-ELISFIIDFNNLKTDV--KDIEISFNFNRMMNDAEQSQIIA---QSQY-LSRETLVKSSPLVDDYKAE 436 (474) T ss_pred HHHHHHHHHHH-HHHHHHHHHhCCCccc--ceeeEEeccCcccCHHHHHHHHH---HcCC-CCHHHHHHhCCCCCCHHHH Confidence 33345556664 4666666654222111 12356777777788777777654 4576 899999998864 332211 Q ss_pred chhcccCCCcccccccccccccccccccccccccccchHH Q lcl|Aclame:pro 412 EPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDK 451 (526) Q Consensus 412 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (526) -+-+.............. ...............+...+ T Consensus 437 ~eri~~E~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~e 474 (474) T protein:vir:97 437 LERIEQEQMEYNKQLPNL--DDGGADGAQQQEGSNNKESE 474 (474) T ss_pred HHHHHHHHHHHHhhcccc--CCCCCCCcccCCCCcccccC Confidence 111100000000000000 00000000000000000000 No 145 >protein:vir:94498 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240672;genbank:gi:66396340;genbank:GeneID:5133762 Probab=98.75 E-value=6.5e-08 Score=59.99 Aligned_cols=405 Identities=10% Similarity=-0.006 Sum_probs=182.4 Q ss_pred CCeeecC-CCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHH------HH----- Q lcl|Aclame:pro 1 MAQIVDV-YGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMD------ME----- 68 (526) Q Consensus 1 m~~~~~~-~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~------m~----- 68 (526) |=.++.. ...|+..+....- . +...+++..+...+.... ....++..+.+. +. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~-------------~~~~~~~~~i~~~i~~~~-~~~~~~~~~~~YY~g~~~i~~~~~~ 65 (474) T protein:vir:94 1 MFNIIRMPWDKPYGEEVVEQL-K-------------PQFETQEEMIVRLIDDHR-KQLDKITVGQRYYDKDNDIVKQMKK 65 (474) T ss_pred CcccccccCCCchhhHHHHhh-h-------------hcccCHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchhcccch Confidence 4433332 2333321111100 0 000111111111111111 011111111110 00 Q ss_pred ----------h-----ccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-Hhhhh Q lcl|Aclame:pro 69 ----------E-----RDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGH 132 (526) Q Consensus 69 ----------~-----~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~ 132 (526) . ..+...-.+.+...-+.+.+..+... ++...++++.++.+ +|...+.++. ++.-| T Consensus 66 ~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~~l~g~p~~~~~~------d~~~~~~l~~~~~n--~~~~~~~e~~~~~~~~ 137 (474) T protein:vir:94 66 VDVHGNIDYDKPDWRITTNFHQNLVDQKVSYVASKPVTYSCE------DENVLKVIHDVLDT--RWDNKLIDILTATSNK 137 (474) T ss_pred hccccccccccCcceeecchHHHHHHHHHhhhhcCCceeccC------cHHHHHHHHHHHhc--cHHHHHHHHHHHHhhc Confidence 0 12334445555556667777776532 23455677777653 4777766665 68889 Q ss_pred cceeeeEEEeecCCeeEEeeeeeecCceeE--ecccC-Cc-----------------------eEEeccCCCCce----- Q lcl|Aclame:pro 133 GYSCIELEWALQGREWMPLAFHHRPQSWFQ--LNPED-QN-----------------------ELRLRDNSPAGE----- 181 (526) Q Consensus 133 G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~--~~~~~-~~-----------------------~l~~~~~~~~g~----- 181 (526) |.+ .+++|...+|...+. ..+|..+. |+... +. ...++..+.... T Consensus 138 G~~-~~~~~~d~~~~~~i~---~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~ 213 (474) T protein:vir:94 138 GID-WLQVYINENGEMKLF---RVPAEQAIPIWVDKEREELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYY 213 (474) T ss_pred Cce-EEEEEecCCCeeEEE---EEcccceEEEEcCCCCCceEEEEEEEEecCeEEEEEEeCCeEEEEEEcCCcccccccc Confidence 974 567776555654432 23322111 11110 00 000110000000 Q ss_pred ---------eecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHH Q lcl|Aclame:pro 182 ---------ALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLL 252 (526) Q Consensus 182 ---------~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~ 252 (526) ...+...+-+.+ -..|++|.|.+..+....=--...+..++..++.++.|+++.+--.+...++ T Consensus 214 ~~~~~~~~~~~~~~g~vPvv~--~~nn~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~~~~~lv~~g~~~~~~~~----- 286 (474) T protein:vir:94 214 GANHVQSHFSNGNWGRVPFIA--FKNNPEEVSDIWMYKSIIDAIDKRLSDAQNMFDESVELIYILKGYEGEDLEE----- 286 (474) T ss_pred CcCcccccccccCCCccceEE--ecCCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccchh----- Confidence 000111111111 1347889999988665555556678899999999999999987543332221 Q ss_pred HHHHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHH Q lcl|Aclame:pro 253 RAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLA 332 (526) Q Consensus 253 ~al~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ 332 (526) ...++.....+.++.+.++++++. ..+...++..++.+.+.|...-.+..++.+...|+.+.-|+. ....-....+. T Consensus 287 -~~~~~~~~~~i~~~~~~~~~~l~~-~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~-~~~~~l~~k~~ 363 (474) T protein:vir:94 287 -FMRGLKYYKAINVDGDGGVETIQV-EVPVSSTKEYIDLMRVYIMEFGQGVDFQTDKFGSAPSGIALK-FLYGNLDLKAN 363 (474) T ss_pred -hhhhhhccceeeccCCCceeEEee-cCCHHHHHHHHHHHHHHHHHHhCccccCccccccccHHHHHH-HHHHHHHHHHH Confidence 233455667778899999999974 345667888999999998887655545443221111111111 11111222233 Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCC-CCCCcc Q lcl|Aclame:pro 333 SDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGI-PQPAKN 411 (526) Q Consensus 333 ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Gl-p~~~~~ 411 (526) .-.+.+...|. ++++.++.+....... .--.+.|....+.|....++.+. ..|+ +|.+.+.+.++. +.+... T Consensus 364 ~k~~~~~~~l~-~~~~li~~~~~~~~d~--~~i~v~f~~~~p~~~~e~a~~~~---~~g~-iS~et~l~~l~~v~D~~~E 436 (474) T protein:vir:94 364 KLKNKATVAIQ-ELISFIIDFNNLKTDV--KDIEISFNFNRMMNDAEQSQIIA---QSQY-LSRETLVKSSPLVDDYKAE 436 (474) T ss_pred HHHHHHHHHHH-HHHHHHHHHhCCCccc--ceeeEEeccCcccCHHHHHHHHH---HcCC-CCHHHHHHhCCCCCCHHHH Confidence 33345556664 4666666654222111 12356777777788777777654 4576 899999998864 332211 Q ss_pred chhcccCCCcccccccccccccccccccccccccccchHH Q lcl|Aclame:pro 412 EPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDK 451 (526) Q Consensus 412 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (526) -+-+.............. ...............+...+ T Consensus 437 ~eri~~E~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~e 474 (474) T protein:vir:94 437 LERIEQEQMEYNKQLPNL--DDGGADGAQQQEGSNNKESE 474 (474) T ss_pred HHHHHHHHHHHHhhcccc--CCCCCCCcccCCCCcccccC Confidence 111100000000000000 00000000000000000000 No 146 >protein:vir:7987 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817341;genbank:gi:29565769;genbank:GeneID:1258964 Probab=98.75 E-value=6.8e-08 Score=59.89 Aligned_cols=396 Identities=12% Similarity=-0.008 Sum_probs=167.3 Q ss_pred chhhhhh--hhhhhhhhhhhhhcccCHHHHHHHHHccc------CCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 18 REPQTSR--LAGLAKEFAQHPAKGLTPAKLARILVEAE------QGNLQAQAELFMDMEERDAHLFAEMSKRKRAILGLD 89 (526) Q Consensus 18 ~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~l~~a~------~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~av~~~~ 89 (526) ..+.|+. +.-+.+.+..+..+ ..++.+-.+.-- ..-...+...-. ........-++++....+.+.+ T Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~r---~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~--~~~~n~~~~ivd~~~~~l~~~g 75 (456) T protein:vir:79 1 MTASTPAEWLPVLTKRIDDGMSR---VRLLARYSNGDAPLPELTRNTSAAWRSFQR--EARTNWGLMVRDSVADRIIPNG 75 (456) T ss_pred CCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHhccCChhhcCcccChhhchhhh--hhhcchHHHHHHHHHhhhccCC Confidence 1111110 11111111111000 011111111000 000000000000 0012233445555555566777 Q ss_pred ceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCce--eEeccc Q lcl|Aclame:pro 90 WAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQSW--FQLNPE 166 (526) Q Consensus 90 w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~--f~~~~~ 166 (526) +.+...++. ... +.+.+++... .|+....+++ ++.-||.+ ++++|...+|...+. ..+|.. ..++.. T Consensus 76 ~~~~~~~d~-~~~----~~~~~~~~~n-~~d~~~~~~~~~a~~~G~a-~~~~~~~edg~~~i~---~~~p~~~~~i~d~~ 145 (456) T protein:vir:79 76 ITVGGSADS-DLA----LRARRIWRDN-RMDSVCKQWVKYGLDFGES-YLTCWRRDDGTATIT---ADSPETMVVSVDPL 145 (456) T ss_pred eecCCCCCc-cHH----HHHHHHHHhc-ChhHHHHHHHHHHhhcCee-EEEEeeCCCCceEEE---EeccceeEEEEcCC Confidence 765432222 222 2344555543 4777777666 78889985 578887666654433 222221 111211 Q ss_pred CCce----EEecc--------------C---------------------CCCc--ee----ecCCCeEEEeecCCCCccc Q lcl|Aclame:pro 167 DQNE----LRLRD--------------N---------------------SPAG--EA----LQPFGWIIHRPRARSGYVA 201 (526) Q Consensus 167 ~~~~----l~~~~--------------~---------------------~~~g--~~----lp~~k~i~~~~~~~~g~p~ 201 (526) .... +++.. . ...+ .+ -+.++.+... .+.|+. T Consensus 146 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv---~~~N~~ 222 (456) T protein:vir:79 146 QPWRIRSAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVV---VYQNPD 222 (456) T ss_pred CCCceEEEEEEEEecCCceeEEEEEcCCceEEEEEEEEeeccccceeeeccCCceeecccccCCCCceeEE---EecCCC Confidence 1100 00000 0 0000 00 0011111111 135788 Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCC--CHHHHHHHHHHHHH--hhcCeEEEecCCceEEEeec Q lcl|Aclame:pro 202 RSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGT--ADEEKATLLRAVTG--LGHAAAGIIPETMAIDFQQA 277 (526) Q Consensus 202 g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~--~~~e~~~l~~al~~--~~~~~~~iip~~~~ie~~~a 277 (526) |.|.+..+....=--...+..-+...+.|..|.++..-.... ..++.......... .+.+....+|.+.++..+. T Consensus 223 ~~gd~e~v~~liD~~~~~~s~~~~~~~~~a~~~~~~~G~~~~~~~~d~~g~~i~~~~~~~~~~~~~~~~~~~~~~~q~~- 301 (456) T protein:vir:79 223 GMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSSEHRLPKVDENGNAIDYASIFEAAPGALWELPPGVDIWESQ- 301 (456) T ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcccccccccccccchhhhhhhhccccccCCCCcceeeec- Confidence 999888865433222334445556777788887765421100 00011111111111 2334455667777764443 Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 278 AQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPG 357 (526) Q Consensus 278 ~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~ 357 (526) ..+...|.+.++.+-++|+..---+. ....+..+..|...-+....-+...++.-.+.+...|+ ++++.++.+.... T Consensus 302 -~~~~~~~~~~l~~~i~~i~~~t~~p~-~~~~~~~~N~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~-~~~~l~~~~~g~~ 378 (456) T protein:vir:79 302 -TNDFTPMLSAIKEHIRQLSSATKTPL-PMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLE-AILVKALQIEGES 378 (456) T ss_pred -ccChHHHHHHHHHHHHHHHhhcCCCh-hHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCC Confidence 33456688888888888876532211 11111100112222222233333444555567777775 4677666665322 Q ss_pred CCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCccccccccccccccccc Q lcl|Aclame:pro 358 SPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALAT 437 (526) Q Consensus 358 ~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (526) .. .-.++.|....+.++.+.|+++.+|+..|+ ++.+-.++.+|+.+.+-......... .......+ ...+.+. T Consensus 379 --~~-~~i~v~w~~~~~~s~~~~ada~~kl~~~G~-~~~~~~~~~lg~~~~~i~~~e~~r~~--~e~~~~~~-~~~~~~~ 451 (456) T protein:vir:79 379 --VE-DTVDVSFESPDRVTLGEKYSAASLAKAAGE-SWASIRRNILNYNADQIKQDDLDRAR--EQITLFAG-NPVQRPQ 451 (456) T ss_pred --cc-ccceEEeCCCCCcCHHHHHHHHHHHHhcCC-ChHHHHHhcCCCCHHHHHHHHHHHHH--HHHHHHhh-hHhhcCC Confidence 11 224667777778888999999999999998 66777778889865321110000000 00000000 0000000 Q ss_pred ccccc Q lcl|Aclame:pro 438 IVGPR 442 (526) Q Consensus 438 ~~~~~ 442 (526) ..++. T Consensus 452 ~~~~~ 456 (456) T protein:vir:79 452 EDGSR 456 (456) T ss_pred CCCCC Confidence 00000 No 147 >protein:vir:95113 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240817;genbank:gi:66394677;genbank:GeneID:5133907 Probab=98.75 E-value=6.8e-08 Score=59.88 Aligned_cols=412 Identities=10% Similarity=0.032 Sum_probs=185.0 Q ss_pred CCeee-cCCCCccC---ccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCC--H-HHHHHH----HHHHH- Q lcl|Aclame:pro 1 MAQIV-DVYGNPIR---TQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGN--L-QAQAEL----FMDME- 68 (526) Q Consensus 1 m~~~~-~~~g~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~--~-~~~~~l----~~~m~- 68 (526) |--++ =+++.|.. ++.+.......---+.+-+..|..+ ..++.. ++.--.|. + .+.... -.+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~---~~~~~~-~~~Yy~g~~~i~~r~~~~~~~~~~~~~~ 76 (474) T protein:vir:95 1 MFNIIRMPWDKPYGEEVVEQLKPQFETQEEMIIRLIDDHRKQ---LDKITV-GQRYYDKDNDIVKQMKKVDVYGNIDYDK 76 (474) T ss_pred CcceeecCCCCchhhHHHHhhhhccCChHHHHHHHHHHHHHH---HHHHHH-HHHHhcccCchhcccccccccccccccc Confidence 33211 12333332 1222111100000111111111100 111111 01000110 0 000000 00000 Q ss_pred ----hccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEee Q lcl|Aclame:pro 69 ----ERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWAL 143 (526) Q Consensus 69 ----~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~ 143 (526) ...+...-.+.+...-+.+.+..+... ++...++++.++.+ +|...+..+. ++.-||.+ .+++|.. T Consensus 77 ~~~ki~~n~~~~Ivd~~~~~l~g~p~~~~~~------d~~~~~~l~~~~~n--~~~~~~~e~~~~~~~~G~~-~~~v~~d 147 (474) T protein:vir:95 77 PDWRITTNFHQNLVDQKVSYVASKPVTYSCE------DESVLKIIHDVLDT--RWDNKLIDILTATSNKGID-WLQVYIN 147 (474) T ss_pred ccceeccchHHHHHHHHHhhhccCCceeccC------chHHHHHHHHHHhc--cHHHHHHHHHHHHhhcCcE-EEEEEec Confidence 012344445555666677888777532 23455677777764 4676666554 68889975 4677755 Q ss_pred cCCeeEEeeeeeecCcee--EecccC-Cce---EEe-ccCCCCceee--------------------------------- Q lcl|Aclame:pro 144 QGREWMPLAFHHRPQSWF--QLNPED-QNE---LRL-RDNSPAGEAL--------------------------------- 183 (526) Q Consensus 144 ~~g~~~~~~l~~r~~~~f--~~~~~~-~~~---l~~-~~~~~~g~~l--------------------------------- 183 (526) .+|.+.+.. .+|..+ .|+... +.. +++ ...+.....+ T Consensus 148 ~~~~~~i~~---~~p~~~~~v~d~~~~~~~~~~i~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (474) T protein:vir:95 148 ENGEMKLFR---VPAEQAIPIWVDKEREELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHIQSHFSN 224 (474) T ss_pred CCCceEEEE---EcccceEEEEcCCCCCceEEEEEEEEEcCeeEEEEEeCCeEEEEEEcCCccccccccCcccccccccc Confidence 556544332 222211 111110 000 000 0000000001 Q ss_pred cCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHhhcCeE Q lcl|Aclame:pro 184 QPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGHAAA 263 (526) Q Consensus 184 p~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~~~~ 263 (526) .++..+-..+- ..|+.|.|.+..+....=--...+.+++..++.+..|+++.+--.+.+.++ ...++....+ T Consensus 225 ~~~g~iPvv~~--~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~~~------~~~~~~~~~~ 296 (474) T protein:vir:95 225 GNWGRVPFIAF--KNNPEEVSDIWMYKSLIDAIDKRLSDAQNMFDESVELIYILKGYEGQDLEE------FMRGLKYYKA 296 (474) T ss_pred cCCCccceEee--cCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccchh------hhhhhhccce Confidence 11111111110 247889999988765555556688899999999999998887433332121 2233445566 Q ss_pred EEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 264 GIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLS 343 (526) Q Consensus 264 ~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln 343 (526) +.++.+.++++++. ......++..++.+.+.|...-.+..++.+...++.+.-|+ +....-....+..-.+.+...| T Consensus 297 i~~~~~~~~~~l~~-~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al-k~~~~~l~~k~~~k~~~~~~~l- 373 (474) T protein:vir:95 297 INVDGDGGVETIQV-EVPVSSTKEYIDLMRAYIMEFGQGVDFQTDKFGSAPSGIAL-KFLYGNLDLKANKLKNKATVAI- 373 (474) T ss_pred eeccCCCceeEEee-cCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHH-HHHHHHHHHHHHHHHHHHHHHH- Confidence 77899999999874 34567789999999999998766665554332211111111 1111112223344445566666 Q ss_pred HHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCC-CCCCccchhcccC---- Q lcl|Aclame:pro 344 RDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGI-PQPAKNEPVLRSA---- 418 (526) Q Consensus 344 ~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Gl-p~~~~~e~~~~~~---- 418 (526) +++++.++.+...... .....+.|....+.|....++.+. ++|+ +|.+.+.+.++. +.++..-+-+... T Consensus 374 ~~~~~li~~~~g~~~d--~~~i~v~f~~~~p~d~~e~a~~~~---~~g~-iS~et~i~~l~~v~d~~~E~~ri~~E~~~~ 447 (474) T protein:vir:95 374 QELIGFIIDFNNLKMD--VKDIEISFNFNRMMNDAEQSQIIA---QSQY-LSRETLVKSSPLVDDYKAELERIEQEQMEY 447 (474) T ss_pred HHHHHHHHHHhCCCcc--cceeeEEeccCCCcCHHHHHHHHH---hcCC-CchHHHHHhCCCCCCHHHHHHHHHHHHHHH Confidence 3566666665432211 123467788888888777777654 5687 888888888864 3332111000000 Q ss_pred CCcccccccccccccccccccccccccccchHH Q lcl|Aclame:pro 419 AQPAILSRQHGQRVAALATIVGPRYGDQQALDK 451 (526) Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (526) ..........+.............. .+ T Consensus 448 ~~~~~~~~~~~~d~~~~~~~~~~~~------~~ 474 (474) T protein:vir:95 448 NKQLPNLDDGGADGAQQQERSNDKE------SE 474 (474) T ss_pred HhcccccccccCCCCcCCCCCccCC------CC Confidence 0000000000000000000000000 00 No 148 >protein:vir:5961 Length: 503 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690661;genbank:geneid:6329220;genbank:gi:22855055;interpro:IPR006428;uniprot:P54309;genbank:GeneID:955279 Probab=98.74 E-value=7.3e-08 Score=59.70 Aligned_cols=419 Identities=13% Similarity=0.085 Sum_probs=192.6 Q ss_pred CCeeecCCCCcc-Cccccchhhh-----hhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCC--HHH-HHHHHHH---H- Q lcl|Aclame:pro 1 MAQIVDVYGNPI-RTQQLREPQT-----SRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGN--LQA-QAELFMD---M- 67 (526) Q Consensus 1 m~~~~~~~g~p~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~--~~~-~~~l~~~---m- 67 (526) |+.|+...-.-+ ......++.. .....+.+-+..| ...++..+.+ --.|. +.. ....+.. . T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~-----~~~~~~~~~~-YY~g~~~i~~~~~~~~~~~~~~~ 74 (503) T protein:vir:59 1 MADIYPLGKTHTEELNEIIVESAKEIAEPDTTMIQKLIDEH-----NPEPLLKGVR-YYMCENDIEKKRRTYYDAAGQQL 74 (503) T ss_pred CcccccCChhhHHhHHHhhhhhhhhccchhHHHHHHHHHhh-----cHHHHHHHHH-Hhccccchhhccchhcccccccc Confidence 876664331111 1111111111 1111222222222 1112111111 11111 000 0000000 0 Q ss_pred --------HhccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-Hhhhhcceeee Q lcl|Aclame:pro 68 --------EERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIE 138 (526) Q Consensus 68 --------~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~E 138 (526) ....+...-.+.+...-+.+.+..+... ++...++++.++.+ +|......+. ++.-||.++ + T Consensus 75 ~~~~~~~~ri~~n~~~~ivd~~~~yl~g~~~~~~~~------d~~~~~~l~~~~~n--~~~~~~~~~~~~~~~~G~~~-~ 145 (503) T protein:vir:59 75 VDDTKTNNRTSHAWHKLFVDQKTQYLVGEPVTFTSD------NKTLLEYVNELADD--DFDDILNETVKNMSNKGIEY-W 145 (503) T ss_pred cccccccceeecchHHHHHHHHHhhhhcCCeeeccC------cHHHHHHHHHHHhc--CHHHHHHHHHHHHhhCCeEE-E Confidence 0012334555666667777888777532 23455677777653 5777766655 688899986 4 Q ss_pred EEEeecCCeeEEeeeeeecCceeE--ecccC-Cce---EE-eccCCCC-----ceee----------------------- Q lcl|Aclame:pro 139 LEWALQGREWMPLAFHHRPQSWFQ--LNPED-QNE---LR-LRDNSPA-----GEAL----------------------- 183 (526) Q Consensus 139 i~w~~~~g~~~~~~l~~r~~~~f~--~~~~~-~~~---l~-~~~~~~~-----g~~l----------------------- 183 (526) ++|...+|.+.+ ...+|..+. ++... +.. ++ +...... -..+ T Consensus 146 ~v~~d~dg~~~i---~~~~p~~~~~i~d~~~~~~~~~~ir~~~~~~~~~~~~~~~evy~~~~i~~~~~~~~~~~~~~~~~ 222 (503) T protein:vir:59 146 HPFVDEEGEFDY---VIFPAEEMIVVYKDNTRRDILFALRYYSYKGIMGEETQKAELYTDTHVYYYEKIDGVYQMDYSYG 222 (503) T ss_pred EEeecCCCceEE---EEEccceeEEEEeCCCCCceEEEEEEEEEecCCCceEEEEEEEeCCcEEEEEEcCCccccccccc Confidence 555444455433 233332211 11110 100 00 0000000 0000 Q ss_pred --------------cCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHH Q lcl|Aclame:pro 184 --------------QPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKA 249 (526) Q Consensus 184 --------------p~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~ 249 (526) .++..+-+. .-..|+.|.|.+..+....=.-...+..++..++.++.|+++.+--.+...++ T Consensus 223 ~~~~~~~~~~~~~~~~~~~vPiv--~~~nn~~~~sd~~~~~~liDa~d~~~s~~~~~~~~~~~~~~v~~g~~~~~~~~-- 298 (503) T protein:vir:59 223 ENNPRPHMTKGGQAIGWGRVPII--PFKNNEEMVSDLKFYKDLIDNYDSITSSTMDSFSDFQQIVYVLKNYDGENPKE-- 298 (503) T ss_pred ccccccceeecceeccCCccceE--EecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCeeEeecCCccccch-- Confidence 011100000 11257789999888665555556677888888899999999887433332221 Q ss_pred HHHHHHHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHH Q lcl|Aclame:pro 250 TLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHD 329 (526) Q Consensus 250 ~l~~al~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~ 329 (526) ...++....++.+|.+.+++++.. ......++..++.+.+.|.+.-.+..++.+...|+.+.-|+ +....-... T Consensus 299 ----~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~~~Sg~Ai-~~~~~~l~~ 372 (503) T protein:vir:59 299 ----FTANLRYHSVIKVSGDGGVDTLRA-EIPVDSAAKELERIQDELYKSAQAVDNSPETIGGGATGPAL-ENLYALLDL 372 (503) T ss_pred ----hhhhhhcccceeccCCCcceeEec-cCCHHHHHHHHHHHHHHHHHHhcccCCCcccccccccHHHH-HHHHHHHHH Confidence 223455667778899999999874 34556788999999999988866655554332221111121 112222223 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-c--CCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCC Q lcl|Aclame:pro 330 LLASDARQLAATLSRDLLWPLLVL-N--RPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIP 406 (526) Q Consensus 330 ~~~ad~~~i~~~ln~~li~~l~~~-N--f~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp 406 (526) .+..-.+.+...|. ++++.++.+ + .+.......-..+.|....+.|..+.++.+.+|+..|+ +|.+.+.+.++.- T Consensus 373 k~~~~~~~~~~~l~-~~~~~i~~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~~~~~~~~kl~~~Gi-iS~et~l~~l~~v 450 (503) T protein:vir:59 373 KANMAERKIRAGLR-LFFWFFAEYLRNTGKGDFNPDKELTMTFTRTRIQNDSEIVQSLVQGVTGGI-MSKETAVARNPFV 450 (503) T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhccCcccccccceeEEeCCCCCCCHHHHHHHHHHHHhCCC-CchHHHHHhCCCC Confidence 33444455666664 355544432 2 22211112234788888999999999999999999997 8888888887542 Q ss_pred -CCCcc-chhcc-c----CCCcccccccccc--cccccccc-cccccccccch Q lcl|Aclame:pro 407 -QPAKN-EPVLR-S----AAQPAILSRQHGQ--RVAALATI-VGPRYGDQQAL 449 (526) Q Consensus 407 -~~~~~-e~~~~-~----~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~ 449 (526) .++.+ +.+.. . ...........+. ........ ........++. T Consensus 451 ~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 503 (503) T protein:vir:59 451 QDPEEELARIEEEMNQYAEMQGNLLDDEGGDDDLEEDDPNAGAAESGGAGQVS 503 (503) T ss_pred CCHHHHHHHHHHHHHHHHhhhccccCccCCCCCCCcCCCCCCcccCCCCCCcC Confidence 22211 00000 0 0000000000000 00000000 00000111111 No 149 >protein:vir:733 Length: 453 # NCBI annotation: minor structural protein 1 # Family: family:all:125 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108710;genbank:gi:13487832;genbank:GeneID:920851 Probab=98.70 E-value=1e-07 Score=58.91 Aligned_cols=412 Identities=11% Similarity=0.035 Sum_probs=183.8 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHH-HHHHHH--HHHHhccHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQ-AQAELF--MDMEERDAHLFAE 77 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~-~~~~l~--~~m~~~D~~v~s~ 77 (526) |.- -+ -+.|......+..... +.+-+..|-.+--...++.+.... .+ ++. .....- .......+...-. T Consensus 1 ~~~--~~-~~~~~~~~~~~~~~~~---i~~~i~~~~~~~~r~~~~~~yy~g-~~-~i~~~~~~~~~~~~~ki~~n~~~~i 72 (453) T protein:vir:73 1 MNL--KP-IKLMTYSRDEEITDKV---VNDFMKKHQEEVERYEYLGNMYKG-IM-EISSQKAKDSWKPDNRLTNNFAKYI 72 (453) T ss_pred Ccc--cc-ceeeeccccccCCHHH---HHHHHHHHHHHHHHHHHHHHHhcc-cc-chhcCCCCCccCccceeecchHHHH Confidence 210 00 0011111111110011 111111111100000111111100 00 000 000000 0000014455556 Q ss_pred HHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeee Q lcl|Aclame:pro 78 MSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHR 156 (526) Q Consensus 78 l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r 156 (526) +.+...-+.+.+..+...+ ....+++.+++... .|......+. ++.-||.+. +++|...+|...+..+ T Consensus 73 vd~~~~~l~g~~~~~~~~d------~~~~~~l~~~~~~n-~~~~~~~~~~~~~~~~G~~~-~~v~~d~~~~~~i~~~--- 141 (453) T protein:vir:73 73 VDTFVGYFNGIPIKKTHDD------KSVLEAMQLFDNLN-DMEDEESELAKIACVYGRAY-ELMYQNESTESEVIYC--- 141 (453) T ss_pred HHHhhhhhcccCceeecCC------hHHHHHHHHHHHhc-ChhHHHHHHHHHHHhcCeEE-EEEEeCCCCceEEEEE--- Confidence 6666677778887776422 23446677777654 4777777666 688899764 5666544554433222 Q ss_pred cCcee--Eeccc----------------CC---------ceEEeccCCCCce---ee-cCCCeEEEeecCCCCccccchh Q lcl|Aclame:pro 157 PQSWF--QLNPE----------------DQ---------NELRLRDNSPAGE---AL-QPFGWIIHRPRARSGYVARSGL 205 (526) Q Consensus 157 ~~~~f--~~~~~----------------~~---------~~l~~~~~~~~g~---~l-p~~k~i~~~~~~~~g~p~g~gL 205 (526) +|... .++.. +. ....+...+.... .. .+++.+-..+ -..++.|.|. T Consensus 142 ~p~~~~~v~dd~~~~~~~~~i~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~--~~n~~~g~s~ 219 (453) T protein:vir:73 142 SPLNVFMVYDDSIKQKPLFAVYYGFDEEGNLSGTVYTLLETISITGKAGEVKFGESTYNVYSDLPIVE--YNFNEERQSI 219 (453) T ss_pred cccceEEEEeCCCCceeEEEEEEEEecCceEEEEEEeCCeEEEEEecCCceEEccceeccCCceeEEE--ecCCCCCCcc Confidence 22111 11110 00 0011111111100 00 1111111111 1346788999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHH----HHHHhhcCeEEEecCCceEEEeecCCCC Q lcl|Aclame:pro 206 FRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLR----AVTGLGHAAAGIIPETMAIDFQQAAQGS 281 (526) Q Consensus 206 l~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~----al~~~~~~~~~iip~~~~ie~~~a~~~~ 281 (526) +..+....=-=...+..++..++.|..|.++.+-. +.++++...+.. .+.....++....+.+.+++|++. ..+ T Consensus 220 ~~~v~~liDa~~~~~S~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~-~~~ 297 (453) T protein:vir:73 220 FEPVHSLINSYNKVTSEKANDVEYFSDQYLVFLGA-EVDEEDAKNIKDNRLINFFDKNSNGQGTNAAKVDVKFLDK-PDS 297 (453) T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccceeeeecC-CCCchhhhcccccccccccccccccccccccCceeEEeee-cCC Confidence 88766555455667889999999999999887632 122333332221 122233445566677888999873 445 Q ss_pred hHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCC Q lcl|Aclame:pro 282 SEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVL-NRPGSPD 360 (526) Q Consensus 282 ~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~-Nf~~~~~ 360 (526) ...++..++.+.+.|...-.+..++.+.. |+.+.-|+ +....-....+..-.+.+...|. ++++.++.+ +..+... T Consensus 298 ~~~~~~~~~~l~~~I~~~s~~p~~~~~~~-gn~Sg~Al-~~~~~~l~~ka~~~~~~~~~~l~-~~~~li~~~~~~~~~~~ 374 (453) T protein:vir:73 298 DVQTENLLNRLERSIFQFTMAANISDENF-GNSSGVAL-AYKLQAMSNLALSFQRKFQSALN-RRYSLWSSLSTNASNKD 374 (453) T ss_pred HHHHHHHHHHHHHHHHHHhCCcccCcccc-cCccHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCCcc Confidence 56789999999999988765655554321 21111121 11122222333344455566664 455555554 3332222 Q ss_pred cccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCC-CCCCccchhcccCCCccccccccccccccccccc Q lcl|Aclame:pro 361 VRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGI-PQPAKNEPVLRSAAQPAILSRQHGQRVAALATIV 439 (526) Q Consensus 361 ~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Gl-p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (526) ......+.|....+.|..+.++.+.+++ |+ +|.+.+.+.++. +.+..+-+-+..... ........+.. T Consensus 375 ~~~~i~v~f~~~~p~~~~~~a~~~~k~~--gi-is~et~~~~~~~~~d~~~E~~ri~~E~~----~~~~~~~~~~~---- 443 (453) T protein:vir:73 375 AWKDIEYTFTRNEPKDIKEQAETANILK--GI-TSEETALSVISVIPDVQAEMEKIKKKKL----LQLSLTRTSNL---- 443 (453) T ss_pred ccccceEEeCCCCCCCHHHHHHHHHHHh--cc-CcHHHHHHhCCCCCCHHHHHHHHHHHHH----HHHHHHHhccC---- Confidence 2234578888888999999999999986 66 888888888866 222111000000000 00000000000 Q ss_pred ccccccccchHHH Q lcl|Aclame:pro 440 GPRYGDQQALDKA 452 (526) Q Consensus 440 ~~~~~~~~~~~~~ 452 (526) ....+...+. T Consensus 444 ---~~~~~~~~~~ 453 (453) T protein:vir:73 444 ---VRMKQMRGNL 453 (453) T ss_pred ---CcchhhhcCC Confidence 0000000000 No 150 >protein:vir:79043 Length: 479 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110721;genbank:gi:134287338;genbank:GeneID:4955217 Probab=98.69 E-value=1e-07 Score=58.87 Aligned_cols=404 Identities=12% Similarity=0.094 Sum_probs=184.6 Q ss_pred eecCCCCccCc--cccchhhhhhhh-hhhhhhhhhhhcccCHHHHHHHHHcccCCC--HH-HHHHH------HHHHH--- Q lcl|Aclame:pro 4 IVDVYGNPIRT--QQLREPQTSRLA-GLAKEFAQHPAKGLTPAKLARILVEAEQGN--LQ-AQAEL------FMDME--- 68 (526) Q Consensus 4 ~~~~~g~p~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~--~~-~~~~l------~~~m~--- 68 (526) .++.+--|.+. ..+...-+..+- .+...+..+ ...++... ..--.|. +. +.... .+... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~-~~yy~g~~~i~~~~~~~~~~~~~~~~~~~~~ 74 (479) T protein:vir:79 1 MLNIYISETDLIKVQLKKESTINLVKVIEHYILKH-----RPEKYKQG-EEYYYGNTDVNNKRRYYLLDGAKVDDFTKVN 74 (479) T ss_pred CCCceecccceEeeccccCChhHHHHHHHHHHhhh-----hHHHHHHH-HHHhccCCcccccccccccccccccccccCc Confidence 33333333221 001111111111 111111111 00111111 1111111 00 00000 00000 Q ss_pred --hccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecC Q lcl|Aclame:pro 69 --ERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQG 145 (526) Q Consensus 69 --~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~ 145 (526) ...+...-.+.+...-+.+.+..+... ++...++++.++.+ +|.....++. ++..||.+. +++|...+ T Consensus 75 ~ki~~~~~~~Ivd~~~~~l~g~p~~~~~~------~~~~~~~~~~~~~n--~~~~~~~~~~~~~~~~G~~~-~~v~~d~~ 145 (479) T protein:vir:79 75 NKAINNYHKLLVDQKVGYSVGNPIVFNAD------DDNLTKLLNDLLGE--EFDDTITELYLNASNKGVEW-LHPYINRK 145 (479) T ss_pred ceeecchHHHHHHHHHhhhhcCCceeccC------CHHHHHHHHHHHhc--CHHHHHHHHHHHHHhcCeEE-EEEEeCCC Confidence 012334445566667778888777532 12345566776654 5777777766 688899764 56665445 Q ss_pred CeeEEeeeeeecCcee--EecccC-Cce---E-------------------------EeccCCCCce------------- Q lcl|Aclame:pro 146 REWMPLAFHHRPQSWF--QLNPED-QNE---L-------------------------RLRDNSPAGE------------- 181 (526) Q Consensus 146 g~~~~~~l~~r~~~~f--~~~~~~-~~~---l-------------------------~~~~~~~~g~------------- 181 (526) |..... ..+|... .|+... +.. + .++..+.... T Consensus 146 ~~~~i~---~~~p~~~~~v~d~~~~~~~~~~ir~y~~~~~~~~~~~~~e~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 222 (479) T protein:vir:79 146 GEFKYV---IIPAEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTD 222 (479) T ss_pred CceEEE---EEccceeEEEEeCCCCCceEEEEEEEEEeecCCceEEEEEEEeCCcEEEEEecCCcccccccccccccccc Confidence 554332 2222211 111110 000 0 0000000000 Q ss_pred ---------ee-cCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHH Q lcl|Aclame:pro 182 ---------AL-QPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATL 251 (526) Q Consensus 182 ---------~l-p~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l 251 (526) .. .+++.+-+.+ -..|++|.|.+..+....=-=...+.+++..++.|+.|+.+.+--.+...++ T Consensus 223 ~~~~~~~~~~~~~~~~~vPvv~--~~nn~~g~sd~~~v~~liDa~d~~~S~~~~~~~~~~~~~~v~~g~~~~~~~~---- 296 (479) T protein:vir:79 223 IQEGHFRINNKEQGWGKVPFIP--FKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQE---- 296 (479) T ss_pred cccccccccccccCCCcccEEE--ecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCcccccc---- Confidence 00 0111111111 1246789999988766655556677889999999999999977432222221 Q ss_pred HHHHHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHH Q lcl|Aclame:pro 252 LRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLL 331 (526) Q Consensus 252 ~~al~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~ 331 (526) ...++....++.++.+.++++++. ......++..++.+.+.|...--++.++.+.. |..+.-|+ .....-....+ T Consensus 297 --~~~~~~~~~~i~~~~~~~~~~l~~-~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~-gn~Sg~Ai-~~~~~~l~~k~ 371 (479) T protein:vir:79 297 --FIDNIRYYKSIKVDGGGGVDKLEI-NIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVAL-KFLYSLLDLKC 371 (479) T ss_pred --chhhhhhccceecCCCCcceEEec-cCCHHHHHHHHHHHHHHHHHHhCccccccccc-cchhHHHH-HHHHHHHHHHH Confidence 123344556677799999999974 34567789999999999988876666654321 11111111 11111122233 Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-cCCCCC-CcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCC-CCC Q lcl|Aclame:pro 332 ASDARQLAATLSRDLLWPLLVL-NRPGSP-DVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGI-PQP 408 (526) Q Consensus 332 ~ad~~~i~~~ln~~li~~l~~~-Nf~~~~-~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Gl-p~~ 408 (526) ..-.+.+...+. ++++.++.+ |..+.. .....+.+.|....+.|.+..++.+.+++ |+ +|.+.+.+.++. +.+ T Consensus 372 ~~~~~~~~~~l~-~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~~~~~~a~~~~kl~--g~-iS~et~l~~l~~v~d~ 447 (479) T protein:vir:79 372 SKTEKKFKKAIR-ELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKST--GI-VSDETIVSNHPWVEDV 447 (479) T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhccCCCccccccceEEeCCCCCcCHHHHHHHHHHHh--cc-CcHHHHHHhCCCCCCH Confidence 333444555553 355555533 322211 11234678888888999999999999985 76 899999898875 222 Q ss_pred CccchhcccCCCcccccccccccccccccccccccccccchHHH Q lcl|Aclame:pro 409 AKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKA 452 (526) Q Consensus 409 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (526) ..+-+-+....... .............. .++. T Consensus 448 ~~E~~ri~~E~~~~---~~~~~~~~~~~~~~---------~~e~ 479 (479) T protein:vir:79 448 NDELERLKKQEDTQ---KEYDDLIPNNQDGV---------IDET 479 (479) T ss_pred HHHHHHHHHHHHHH---HHHHhccCcccCCC---------cCcC Confidence 21111011000000 00000000000000 0000 No 151 >protein:vir:106639 Length: 481 # NCBI annotation: ORF003 # Family: family:all:125 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239490;genbank:gi:66395218;genbank:GeneID:4555793 Probab=98.69 E-value=1.1e-07 Score=58.82 Aligned_cols=424 Identities=9% Similarity=-0.053 Sum_probs=185.7 Q ss_pred CCeeecCCCCccCccccchhhhhh---hhhhhhhhhhhhhcccCHHHHHHHHHcccCC--CHHHHH-HHHHHH-----Hh Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSR---LAGLAKEFAQHPAKGLTPAKLARILVEAEQG--NLQAQA-ELFMDM-----EE 69 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g--~~~~~~-~l~~~m-----~~ 69 (526) |. ++++-.++...+....+.-.+ ...+.+-+..|-.. ...++..+.+--... ++.... ...+.. .. T Consensus 6 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~yY~g~~~~i~~~~~~~~~~~~~~~~ki 82 (481) T protein:vir:10 6 IN-NINTKFSPLANDDFVVSDLAELLKEENLRNFISRHQTE--QVPRLEMLESYYLNRNTDILAGERRLQKYGDKADHRA 82 (481) T ss_pred ee-hhchhcccccCceeeeecchhhcCHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCcccccCcccccccccccccee Confidence 54 556666666555443221110 01112212111100 011121111111100 000000 000000 00 Q ss_pred ccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCee Q lcl|Aclame:pro 70 RDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREW 148 (526) Q Consensus 70 ~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~ 148 (526) ..++..-.+.+...-+.+.+..+...+ ....+.+.+++.+. .|+..+.++. ++..+|.+. +++|...+|.. T Consensus 83 ~~n~~~~ivd~~~~~l~g~~~~~~~~d------~~~~~~l~~~~~~n-~~~~~~~~~~~~~~~~G~~~-~~~~~d~dg~~ 154 (481) T protein:vir:10 83 VHNYAKYVSRFIVGYLTGNPITITHQD------NQTNDKIIELNDLN-DADEVNSDLALNLSIYGRAY-EIVYRDFEDRD 154 (481) T ss_pred ecchHHHHHHHHHhhhccCCceEecCC------hhHHHHHHHHHHhc-ChhHHHHHHHHHHHhcCeEE-EEEEeCCCCeE Confidence 234555566666667778887776432 22344566666654 4676666665 688899665 45555445544 Q ss_pred EEeeeeeecCceeE--ecccCC-c----------------------------eEEeccCCCCce---eec-CCCeEEEee Q lcl|Aclame:pro 149 MPLAFHHRPQSWFQ--LNPEDQ-N----------------------------ELRLRDNSPAGE---ALQ-PFGWIIHRP 193 (526) Q Consensus 149 ~~~~l~~r~~~~f~--~~~~~~-~----------------------------~l~~~~~~~~g~---~lp-~~k~i~~~~ 193 (526) .+. ..+|+... |+.... . ...+...+.... +.| +.+.|-..+ T Consensus 155 ~i~---~~~p~~~~~v~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~ 231 (481) T protein:vir:10 155 TFK---VLDPKSTFVVYDQTLDKKVVAGVRYFEKQDKDKVPVQHVEVYTTDKIYYIEIKGGTYHRVEEVEHYYNDVPIIE 231 (481) T ss_pred EEE---EEcccceEEEEcCCCCCceEEEEEEEEEeeCCCceEEEEEEEecCeEEEEEecCCceeecccccccCCceeEEE Confidence 332 23332211 111100 0 001111111100 011 111111111 Q ss_pred cCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHhhcCeEEEe--cCCce Q lcl|Aclame:pro 194 RARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGHAAAGII--PETMA 271 (526) Q Consensus 194 ~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~~~~~ii--p~~~~ 271 (526) - ..++.|.|.+..+....--=...+..++..++.|+.|+++.+-..+.++++...+...-.-......... ..+.+ T Consensus 232 ~--~n~~~g~~~~~~v~~lida~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (481) T protein:vir:10 232 Y--LNDQFKQGDFENVIALIDLYDSAQSDTANYMTDLNDAMLAIIGNVDLDSEDAKAFRDANMIHLEPGTNANGSEGKAE 309 (481) T ss_pred e--ecCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCceeEeecCcCCCccchhhhhhccceeccccccccCCCCCcc Confidence 1 2356788988765433333344667888888999999998874333333332222221110111111111 23457 Q ss_pred EEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 272 IDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLL 351 (526) Q Consensus 272 ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~ 351 (526) ++|+... .....++..++.+.+.|...-.+..++.+...+..++-|+ +....-....+..-.+.+...++ ++++.++ T Consensus 310 ~~~l~~~-~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al-~~~~~~l~~k~~~~~~~~~~~l~-~~~~li~ 386 (481) T protein:vir:10 310 VKYVYKQ-YDVAGVEAYKKRLQNDIHKYTNTPDLNDEQFSGVQSGESM-KYKLFGLEQVRAIKERLFKKGLM-KRYKLLL 386 (481) T ss_pred eeEEeec-CCHHHHHHHHHHHHHHHHHHhCCccccccccccccHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH Confidence 7888643 3456688889999988888765555444322222211222 22222233334444566666674 4556555 Q ss_pred Hh-cCCCCCC-cccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCC-CCCccchhcccCCCcccccccc Q lcl|Aclame:pro 352 VL-NRPGSPD-VRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIP-QPAKNEPVLRSAAQPAILSRQH 428 (526) Q Consensus 352 ~~-Nf~~~~~-~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp-~~~~~e~~~~~~~~~~~~~~~~ 428 (526) .+ |..+... ......+.|....+.|..+.++.+.+++ |+ +|.+.+.+.++.- .+..+-+-+............. T Consensus 387 ~~~~~~~~~~~~~~~i~v~f~~~~~~~~~~~a~~~~kl~--g~-is~et~~~~l~~i~d~~~E~~ri~~E~~~~~~~~~~ 463 (481) T protein:vir:10 387 NNVNLTGLKQHNYAELTITFTPNLPKSMMESINAFNALS--GG-VSESTRLSLLDFIDNPKEELEKMQEEEAQREKQADK 463 (481) T ss_pred HHHhccCCCccccceeeEEeCCCCCcCHHHHHHHHHHHh--cc-CChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhh Confidence 44 3332211 1123577888888899999999999985 65 8988888888752 2211100000000000000000 Q ss_pred cccccccccccccccccc Q lcl|Aclame:pro 429 GQRVAALATIVGPRYGDQ 446 (526) Q Consensus 429 ~~~~~~~~~~~~~~~~~~ 446 (526) .....+............ T Consensus 464 ~~~~~~~~~~~~~dd~~g 481 (481) T protein:vir:10 464 RGYGEAFENHLNVDDSNG 481 (481) T ss_pred ccCCccCCCCCCCCCCCC Confidence 000000000000000000 No 152 >protein:vir:9871 Length: 429 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795633;genbank:gi:28876408;genbank:GeneID:1257942 Probab=98.67 E-value=1.3e-07 Score=58.40 Aligned_cols=372 Identities=13% Similarity=0.063 Sum_probs=183.0 Q ss_pred cCHHHHHHHHHcccCCCHHHHHHHHHHHH-------------------hccHHHHHHHHHHHHHHhcCCceEecCCCCCH Q lcl|Aclame:pro 40 LTPAKLARILVEAEQGNLQAQAELFMDME-------------------ERDAHLFAEMSKRKRAILGLDWAVEPPRNASA 100 (526) Q Consensus 40 l~~~~~~~~l~~a~~g~~~~~~~l~~~m~-------------------~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~ 100 (526) ||+..+...+..... ...++..+.+... -..+...-++.+...-+.+.+..+...+ T Consensus 1 l~~~~l~~~i~~~~~-~~~r~~~l~~yy~g~~~il~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~~---- 75 (429) T protein:vir:98 1 MTKDLLSELIQKHRS-FNLSYSAYKQLYEGDHAILQQKQKEQYKPDNRLVVNFAKYIVDTFNGYFIGVPVQTSHEN---- 75 (429) T ss_pred CCHHHHHHHHHHHHH-HHHHHHHHHHHhccccccccccccccCCCcceeecchHHHHHHHHhhhhcccCceeecCC---- Confidence 333333333332221 1111111111100 0134555666666677778887776422 Q ss_pred HHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCcee--Eeccc-CCceE---Ee Q lcl|Aclame:pro 101 AEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQSWF--QLNPE-DQNEL---RL 173 (526) Q Consensus 101 ~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f--~~~~~-~~~~l---~~ 173 (526) +...+.+.+++... .|+.....+. ++.-||.+ ++++|...+|...+. ..+|+.. .|+.. .+..+ ++ T Consensus 76 --~~~~~~l~~~~~~n-~~~~~~~~~~~~~~~~G~~-~~~v~~d~~g~~~~~---~~~p~~~~~v~dd~~~~~~~~~i~~ 148 (429) T protein:vir:98 76 --KQVSNYLELLDGYN-DQDDNNAELSKICSIYGHG-YELVFNDENAEAGIT---YLTPLEAFIVYDDSIRQKPLFAVRY 148 (429) T ss_pred --hHHHHHHHHHHhhc-CHhHHHHHHHHHHhhcCeE-EEEEEecCCCcEEEE---EEcccceEEEEeCCCCCceEEEEEE Confidence 23444667766653 4666666665 68889975 556665555554332 2222211 11111 10000 00 Q ss_pred c--cC------------------CCCceee-----cCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 174 R--DN------------------SPAGEAL-----QPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLE 228 (526) Q Consensus 174 ~--~~------------------~~~g~~l-----p~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E 228 (526) . .+ ...+..+ .+.+.+-..+ -..++.|.|.+..+....=--...+..++...+ T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~--~~n~~~g~sd~e~v~~liD~~d~~~s~~~~~~~ 226 (429) T protein:vir:98 149 FYNKGGVLEGSYSDASNITYFKDGEKGIEIGESEPHPFDGVPMIE--YVENEERQSLLASVVTLINAFNKAISEKANDVE 226 (429) T ss_pred EEecCceEEEEEEeCceEEEEEecCCceEecccccccCCccceEE--ecCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH Confidence 0 00 0000000 0111111111 134678999999877776666777889999999 Q ss_pred HcCCceEEEecCCCCCHHHHHHHHHHHHHhhcCeEEEecCC----ceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchh Q lcl|Aclame:pro 229 IYGLPIRLGKYPPGTADEEKATLLRAVTGLGHAAAGIIPET----MAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGT 304 (526) Q Consensus 229 ~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~~~~~iip~~----~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqt 304 (526) .|+.|+++.+--. .+++.. .++....++.+|.+ .+++|+.. ......++..++.+.+.|.+.-.++. T Consensus 227 ~~~~p~~~i~g~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~l~~~i~~~s~~p~ 297 (429) T protein:vir:98 227 YFADAYLKILGAE-LDDETL-------KSLRDTRIINLKDTDAQQLTVEFLQK-PDADATQEHLLDRLENLIFRTAMVAN 297 (429) T ss_pred HhcCceeeeecCC-CCcchh-------hhHhhCceeeccCCCCCCcceeEEee-cCCHHHHHHHHHHHHHHHHHHhCccc Confidence 9999999977322 222222 23344455556543 36788864 34556788899999999988876665 Q ss_pred hhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCcccceeEEecCccccCHHHHHHH Q lcl|Aclame:pro 305 LTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVL-NRPGSPDVRRAPRLVFDLREQADITSMAQS 383 (526) Q Consensus 305 ltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~-Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~ 383 (526) ++.+. .|+.+.-|+ +....-....+..-.+.+...+. ++++.++.+ |..+......-..+.|....+.|..+.++. T Consensus 298 ~~~~~-~gn~Sg~Al-~~~~~~l~~k~~~~~~~~~~~l~-~~~~li~~~~~~~~~~~d~~~i~v~f~~~~p~~~~~~a~~ 374 (429) T protein:vir:98 298 ISDES-FGTASGIAL-RYRLQAMDNLAKTKERKFMSGMN-RRYKLIASYPTSKIGPKDWIGIKYKFTRNLPANLLEESQI 374 (429) T ss_pred cCccc-cccchHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCCccccccceEEeCCCCCcCHHHHHHH Confidence 54432 122211122 12222233344444566666664 455555554 222211111124678888889999999999 Q ss_pred HHHHHhCCCcCCHHHHHHHhCC-CCCCccchhcccCCCcccccccccccccccccccccccccccchH Q lcl|Aclame:pro 384 IPALVNVGLEIPSAWVYDKLGI-PQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALD 450 (526) Q Consensus 384 ~~~l~~~G~~v~~~~~~e~~Gl-p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (526) +.++. |+ +|.+.+.+.+|. +.|+ +++..-..... ..... ........ .....++ T Consensus 375 ~~kl~--g~-is~et~~~~l~~v~d~~--~E~~ri~~E~~--~~~~~-~~~~~~~~-----~~~~~~~ 429 (429) T protein:vir:98 375 AGNLA--GI-VSEETQVGVLSIVENPQ--KEIERKNSDKS--TLISR-QAGGLNGQ-----NTTTILE 429 (429) T ss_pred HHHHh--cc-CchHHHHHhCCCCCCHH--HHHHHHHHHHH--HHHHH-HHhhhcCC-----CCCCCCC Confidence 99984 65 899999999975 3322 11110000000 00000 00000000 0000011 No 153 >protein:vir:98444 Length: 434 # NCBI annotation: hypothetical protein # Family: family:all:5096 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958276;genbank:gi:41057250;genbank:GeneID:2732828 Probab=98.65 E-value=1.5e-07 Score=58.04 Aligned_cols=377 Identities=12% Similarity=0.010 Sum_probs=165.2 Q ss_pred hhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHh Q lcl|Aclame:pro 35 HPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLL 114 (526) Q Consensus 35 ~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~ 114 (526) +...+.. +.+....+.+--+ +..-++++....+..-.|+. + +.+ ... .+.+++. T Consensus 1 ~l~~~~~-~~~~~~~~~~v~n-----------------~~~~ivd~~~~~l~~~gf~~--~-d~~-~~~----~~~~i~~ 54 (434) T protein:vir:98 1 MLPKNAE-QAFLDFQRKARTN-----------------FCGLIANASVHRLLALGVTG--P-DGE-PDT----RASRWWQ 54 (434) T ss_pred CCCCCcc-HHHHHhhhhhhcc-----------------chHHHHHHHHhhhccCceec--C-CCc-hHH----HHHHHHH Confidence 1111111 1111111111111 11112222222122222322 1 221 222 2344554 Q ss_pred cCcCHHHHHHHH-HHhhhhcceeeeEEEeecCC-----eeEEeeeeeecCceeE--ecccCCce---EE----------- Q lcl|Aclame:pro 115 DLEGLEDLLLDA-LDGIGHGYSCIELEWALQGR-----EWMPLAFHHRPQSWFQ--LNPEDQNE---LR----------- 172 (526) Q Consensus 115 ~~~~~~~~i~~~-lda~~~G~s~~Ei~w~~~~g-----~~~~~~l~~r~~~~f~--~~~~~~~~---l~----------- 172 (526) +. .|+.....+ .+|.-||.|. +++|...++ .-.| .|..++|++.. +++..+.. +. T Consensus 55 ~N-~~d~~~~~~~~~a~i~G~ay-~~v~~~~~~~~~~~~~~~-~I~~~~p~~~~~i~D~~~~~~~~ai~~~~~~~~~~~~ 131 (434) T protein:vir:98 55 AN-RLDSRQKLVWRMAMAQSAGY-MLVGAHPTRTEDNGRPSP-LITMEHPSECIVEYDPETGEPLVGLKVWHNDIDGFGY 131 (434) T ss_pred hc-ChhHHHHHHHHHHhhcCceE-EEEecCCCcccccCCcee-EEEEeccceeEEEEeCCCCceEEEEEEEEeccCCceE Confidence 43 466666665 4789999664 455643222 1111 13333333221 11110000 00 Q ss_pred -------------eccCCC-Cce---------------eecCCC---eEEEeecCCCCccccchhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 173 -------------LRDNSP-AGE---------------ALQPFG---WIIHRPRARSGYVARSGLFRVLAWPYLFRHYAT 220 (526) Q Consensus 173 -------------~~~~~~-~g~---------------~lp~~k---~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~ 220 (526) .+.... ... ...+++ ++.|.++...+. .|.|-++.+....=-=...+ T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~N~~~~~~-~g~sd~e~vi~liDa~~~~~ 210 (434) T protein:vir:98 132 ARVFFDDTSFPYRTRERTGARLPWGPDSWVYTGTADSGDVHDLGGMQLVEFARMPDLGE-DPEPEFAGVLDIQDRVNLGI 210 (434) T ss_pred EEEEEeCcEEEEEEeeccccccccccccceecccccccccCCCCccceEEeccCCCcCc-CCcchhhhHHHHHHHHHHHH Confidence 000000 000 001122 233444443333 58888888776666666677 Q ss_pred HHHHHHHHHcCCceEEEec--CCCCCHHHHH-HHHHHHHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHH Q lcl|Aclame:pro 221 SDLAEMLEIYGLPIRLGKY--PPGTADEEKA-TLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAIS 297 (526) Q Consensus 221 ~~w~~f~E~~G~P~~vgk~--~~~~~~~e~~-~l~~al~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Is 297 (526) ...+...+-|+.|.++.+- +....++... .....+.....++ +...++.+.+|.+...++...|...++.|-++|+ T Consensus 211 s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~q~~~~~~~~~~~~l~~~i~~~~ 289 (434) T protein:vir:98 211 LNRMAASRFSGFRQKWIKGHKFAKRTDPATGMTVVDQPFVPSPSA-VWASEGENTQFGQLDATDLSGFLKEHASDVRDML 289 (434) T ss_pred HHHHHHHHHhcchhhhhcCCCcccccccccccchhhhhhhccccc-cccCCCCCceEEEecCcchHHHHHHHHHHHHHHh Confidence 8888899999999887752 1111111111 1111112222233 3344455677777555566778888888888887 Q ss_pred HHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCH Q lcl|Aclame:pro 298 KAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADI 377 (526) Q Consensus 298 k~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl 377 (526) ..---+.-... +..+..|...-.....-....++.-.+.+...|. ++++.++.++..... ..-.++.|....+.++ T Consensus 290 ~~~~~p~~~~~-~~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~-~~~rl~~~~~g~~~~--~~~~~v~w~~~~~~s~ 365 (434) T protein:vir:98 290 TISQTPTYLYA-TDLVNISADTIGALDILHVAKVREHIASFSEGLE-SVLALAAAQAGVPED--YTEAEVRWANPAHVTM 365 (434) T ss_pred cccCCCHHHhc-cccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCChh--heeeeEEecCCCCCCH Confidence 66422211110 1101123323234444444555555566777775 466766666543221 2235678888889999 Q ss_pred HHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccccccchHH Q lcl|Aclame:pro 378 TSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDK 451 (526) Q Consensus 378 ~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (526) .+.++++.+|+..| ++.+.+++.+|+++.+- +.+.......+...+....... ....+.........+- T Consensus 366 ~~~ada~~kl~~~g--~~~e~~~~~lg~~~~e~-~r~~~e~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~dg 434 (434) T protein:vir:98 366 AVKADAATKLKSIG--YPLDVIAEELDESPARV-RRIVAGAASQALLAASLLPAPG--APSAGNVPDSGGAVDG 434 (434) T ss_pred HHHHHHHHHHHhcC--CcHHHHHHhCCCCHHHH-HHHHHHHHHHHHHHHhhhccCC--CCCCCCCCcccCCCCC Confidence 99999999999888 47788999999865321 1111100000000000000000 0000000000001111 No 154 >protein:vir:95806 Length: 440 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950583;genbank:gi:119953778;genbank:GeneID:5076876 Probab=98.64 E-value=1.6e-07 Score=57.88 Aligned_cols=398 Identities=11% Similarity=-0.028 Sum_probs=182.8 Q ss_pred CccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCceE Q lcl|Aclame:pro 13 RTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSKRKRAILGLDWAV 92 (526) Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~av~~~~w~v 92 (526) =.........+++..+.+-+.+....-..+.+ .......+. .+ ......-++.+...-+.+.+..+ T Consensus 1 ~~~~~~~~~~~r~~~l~~yy~g~~~~~~~~~~----~~~~~~~~~----ki------~~n~~~~ivd~~~~~l~g~~~~~ 66 (440) T protein:vir:95 1 MLAAFLGSQKQRLAILASYAQGDNFSILSGHR----RLDDEKADY----RV------RHKWGGYISSFATGYVIGNPVSI 66 (440) T ss_pred ChhhHHHHHHHHHHHHHHHhccCCcccccccc----cccccCCcc----ee------ecchHHHHHHhhhhheeccCceE Confidence 00000111122222222221110000000000 000000010 01 13444556677777778888777 Q ss_pred ecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCcee--EecccCCc Q lcl|Aclame:pro 93 EPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQSWF--QLNPEDQN 169 (526) Q Consensus 93 ~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f--~~~~~~~~ 169 (526) ...++. ++...+.+.+++.+. .|+.....+. ++.-||.+. +++|...+|...+. ..+|... .++..... T Consensus 67 ~~~~~~---~~~~~~~l~~~~~~n-~~~~~~~~~~~~~~~~G~a~-~~~~~d~~~~~~i~---~~~p~~~~~~~d~~~~~ 138 (440) T protein:vir:95 67 GVMEGG---SADQLSTIKDIEWQN-DINALNSDLAFDASVYGRAY-EYHFRDKDKVDRVV---LISPLEMFVIRDLTVEQ 138 (440) T ss_pred eeCCCc---cHHHHHHHHHHHHhc-CHhHHHHHHHHHHhhcCeEE-EEEEecCCCceEEE---EEcccceEEEEcCCCCC Confidence 654332 334456677777654 4777766555 688899975 45554444543322 2222211 11111100 Q ss_pred ------------------------eEEec--cCCCCce----e-ecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 170 ------------------------ELRLR--DNSPAGE----A-LQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHY 218 (526) Q Consensus 170 ------------------------~l~~~--~~~~~g~----~-lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~ 218 (526) ...+. .++..+. . -.+.+.|-..+- .++..|.|.+..+....---.. T Consensus 139 ~~~~~i~~~~~~~~~~~~vyt~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~--~n~~~g~sd~e~v~~lida~~~ 216 (440) T protein:vir:95 139 NIIAAVHLPIYADKVNMTVYTKDKVITYKPYSNNSVRLVVDDVKKHSYNDVPVVEW--WNNRFRMGDYESEISLIDAYDA 216 (440) T ss_pred ceEEEEEEEEecCceEEEEEeCCeEEEEEEecCCccceeecceeeccCceeeEEEe--eCCCCCCCchhhhHHHHHHHHH Confidence 00111 0000000 0 012222211111 2466789999988776666667 Q ss_pred HHHHHHHHHHHcCCceEEEecCC---CCCHHHHHHHHHHHHHhhc--CeEEEecCCceEEEeecCCCChHHHHHHHHHHH Q lcl|Aclame:pro 219 ATSDLAEMLEIYGLPIRLGKYPP---GTADEEKATLLRAVTGLGH--AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSE 293 (526) Q Consensus 219 ~~~~w~~f~E~~G~P~~vgk~~~---~~~~~e~~~l~~al~~~~~--~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d 293 (526) .+..++..++.|+.|+++.+-.. ..+.++...+.+.-.-... ........+.+++|++.. .+...++..++.+. T Consensus 217 ~~s~~~~~~~~~~~~~~v~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~-~~~~~~~~~~~~l~ 295 (440) T protein:vir:95 217 GQSDTANYMSDLNDAMLLVKGDLDGIKLSPEDAAKMKDANMLFLKTGISTTGQQTTADASYIYKQ-YDVNGTEAYKNRLA 295 (440) T ss_pred HHHHHHHHHHHhhcceeeeecccccCCCCccchhhhhhccceecccccccccCCCCcceeEEeec-CCHHHHHHHHHHHH Confidence 77889999999999998877532 1233333333222111111 112222445678888643 44567889999999 Q ss_pred HHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCCCcccceeEEec Q lcl|Aclame:pro 294 DAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVL---NRPGSPDVRRAPRLVFD 370 (526) Q Consensus 294 ~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~---Nf~~~~~~~~~p~~~~~ 370 (526) +.|...-..+.++.+...++.+.-|+. ....-....+..-.+.+...+. ++++.++.+ ..+.... .....+.|. T Consensus 296 ~~i~~~s~~p~~~~~~~~~n~Sg~Al~-~~~~~l~~k~~~k~~~~~~~l~-~~~~li~~~~~~~~~~~~~-~~~v~i~f~ 372 (440) T protein:vir:95 296 NDIHRFSRIPNLDDDRFNSTSSGIALL-YKMIGLEQVRKDKETYFTKALR-RRYELISNIHKAINGPVIE-ANKLTFTFH 372 (440) T ss_pred HHHHHHhCCcccccccccccchHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCcccc-cccceEEeC Confidence 999888766555543322211111211 1111112223333445555553 355554433 2222211 234678899 Q ss_pred CccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccccccc Q lcl|Aclame:pro 371 LREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQA 448 (526) Q Consensus 371 ~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (526) ...+.|..+.++.+.++. |+ +|.+.+.++++.-.+..+..-+........... ....+ ......... . T Consensus 373 ~~~p~~~~~~ad~~~kl~--g~-iS~et~~~~l~~~d~~~E~~ri~~E~~~~~~~~--~~~~~---~~~~~~~~~--e 440 (440) T protein:vir:95 373 PNIPQDVWTEIKAYIEAG--GE-ISQETLMENASFTDYKTEHSRILKQGGSSDLEI--GQIVG---DADVGQADT--E 440 (440) T ss_pred CCCCCCHHHHHHHHHHHh--cc-CcHHHHHHhCCCCCcHHHHHHHHHHHHHhhhhH--Hhhcc---CCCCCCcCC--C Confidence 999999999999999984 66 899988888876432221111111111100000 00000 000000000 0 No 155 >protein:vir:105292 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950666;genbank:gi:119967836;genbank:GeneID:4643171 Probab=98.61 E-value=1.9e-07 Score=57.40 Aligned_cols=412 Identities=11% Similarity=0.037 Sum_probs=188.7 Q ss_pred CCeeecCCCCccCccccch--hhh-hhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHH--HH-HHHHHH----H--- Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLRE--PQT-SRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQ--AQ-AELFMD----M--- 67 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~--~~-~~l~~~----m--- 67 (526) |..|==+.+.|+..+-+.. +.. ..-..+.+-+..|..+ ..++....+ --.|... .. ...... . T Consensus 1 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~~~i~~~~~~---~~~~~~~~~-yY~g~~~i~~~~~~~~~~~~~~~~~~ 76 (478) T protein:vir:10 1 MISINWPWDKPYHEQVVEQIKPKYETQEEMILRLVREHKEN---IDNITMGER-YYNHHPDILDAPPKRDVNGDYDETKP 76 (478) T ss_pred CccccCCCCchhHHHHHHHHhhccCCcHHHHHHHHHHHHHH---HHHHHHHHH-HhcCCCchhccccccccccccccccc Confidence 8776555666654332211 110 0001111112222110 111111111 1111100 00 000000 0 Q ss_pred --HhccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeec Q lcl|Aclame:pro 68 --EERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQ 144 (526) Q Consensus 68 --~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~ 144 (526) ...-+...-.+.+...-+.+-+..+...+ .+..+.+.+++++ +|.+.+.++. ++.-+|.++ +++|... T Consensus 77 ~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~~------d~~~~~l~~~~~n--~~~~~~~~~~~~~~~~G~~~-~~~~~d~ 147 (478) T protein:vir:10 77 DWRMYTNYHQNLVDQKVAYAVANPVTFGVDN------DKALKQIQHTLNH--KWDDKLVDILTAASNKGIEW-VQPYVDE 147 (478) T ss_pred cceeccchHHHHHHHHHhhhccCCeeeecCC------hHHHHHHHHHHhc--CHHHHHHHHHHHHHhcCeEE-EEEEecC Confidence 00123444455555566677777775322 2344566777754 4677777665 688899875 5556544 Q ss_pred CCeeEEeeeeeecCce-eE-ecccC-Cc-e--E--------------------EeccCCC----------C--------c Q lcl|Aclame:pro 145 GREWMPLAFHHRPQSW-FQ-LNPED-QN-E--L--------------------RLRDNSP----------A--------G 180 (526) Q Consensus 145 ~g~~~~~~l~~r~~~~-f~-~~~~~-~~-~--l--------------------~~~~~~~----------~--------g 180 (526) +|.+.+. ..+|.. |. |+... +. . + .+..... . + T Consensus 148 ~g~~~~~---~~~p~~~~~i~d~~~~~~~~~~v~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (478) T protein:vir:10 148 EGEFKTF---RVPAEQAVPIWTNKERDELQAFIRVYELDGAERVEYWTKDDVTYYELKEGQLIPDFYRSDDHIQPHYYQG 224 (478) T ss_pred CCeeEEE---EEcccceEEEEcCCCCCceEEEEEEEEecCceEEEEEeCCeEEEEEEcCCeeeccccccccccccceecc Confidence 5554332 222211 11 11110 00 0 0 0000000 0 0 Q ss_pred eeecCCC---eEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 181 EALQPFG---WIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTG 257 (526) Q Consensus 181 ~~lp~~k---~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~ 257 (526) ....++. ++.+ ..+++|.|.+..+....=--...+..++..++.|..|+++.+--.+.... +...+ T Consensus 225 ~~~~~~~~vPvv~~-----~n~~~g~sd~~~v~~liDa~~~~~S~~~~~~~~~~~p~~~~~g~~~~~~~------~~~~~ 293 (478) T protein:vir:10 225 NKLMSWGRVPFIPF-----KNNPQEVSDLFMYKTIIDALDKRLSDTQNTFDESVELIYILKGYEGEDMK------DFMHN 293 (478) T ss_pred cccccCCccceEEe-----ccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCccccc------hhhhh Confidence 0001111 1222 25788999999876666666667888999999999998886643222111 12223 Q ss_pred hhcCeEEEec--CCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 258 LGHAAAGIIP--ETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDA 335 (526) Q Consensus 258 ~~~~~~~iip--~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~ 335 (526) +....++.++ +|.+++++.. ......++..++.+.+.|.+.-.+..++.+...|..+.-|+. ....-.......-. T Consensus 294 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~-~~~~~l~~k~~~~~ 371 (478) T protein:vir:10 294 LKYYKAISVAGESGSGVDTIKV-EVPIDSVKEYTKMLRDYIIEFGQGVDFQQDKFGNSPSGIALK-FMYSNLDLKANKLK 371 (478) T ss_pred hhhcceEEecCCCCCcceEEee-cCChHHHHHHHHHHHHHHHHHhCccccCccccccccHHHHHH-HHHHHHHHHHHHHH Confidence 3444455555 5577888863 345667889999999999988766655433211111111211 11111222334445 Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCC-CCCCccchh Q lcl|Aclame:pro 336 RQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGI-PQPAKNEPV 414 (526) Q Consensus 336 ~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Gl-p~~~~~e~~ 414 (526) +.+...|. ++++.++.+...... ...+.++|....+.|..+.|+.+.+| .|+ +|.+.+.+.++. +.+..+-+- T Consensus 372 ~~~~~~l~-~~~~li~~~~g~~~~--~~~i~i~f~~~~p~d~~e~a~~~~kl--~g~-iS~et~~~~l~~v~D~~~E~~r 445 (478) T protein:vir:10 372 NKTLTALQ-ELLQYIIDFYRLDVK--VQDIEITFNFNVMVNELENSQIAMNS--TGL-LSKETILSNHAWVEDPVAEMER 445 (478) T ss_pred HHHHHHHH-HHHHHHHHHhCCCcc--cccceEEecCCCCCCHHHHHHHHHHH--hCC-CChHHHHHhCCCCCCHHHHHHH Confidence 55666664 466666665422221 22357888888899999999999988 465 899999999975 222211111 Q ss_pred cccCCCcccccccccccccccccccccccccccchHH Q lcl|Aclame:pro 415 LRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDK 451 (526) Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (526) +.... ......................+..+ ++ T Consensus 446 i~~E~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 478 (478) T protein:vir:10 446 IEQEN--IELNQQLPDIEEGLNGEQQRQSENNQ--PE 478 (478) T ss_pred HHHHH--HHHHhhccccccccCCCCCCCCCCCC--CC Confidence 11000 00000000000000000000000000 00 No 156 >protein:vir:95899 Length: 474 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240382;genbank:gi:66396046;genbank:GeneID:5133410 Probab=98.59 E-value=2.4e-07 Score=56.92 Aligned_cols=411 Identities=11% Similarity=0.024 Sum_probs=179.8 Q ss_pred CCeeec-CCCCccCcc---ccchhhhhhhh-hhhhhhhhhhhcccCHHHHHHHHHcccCCC--HHHHHHHHHH------H Q lcl|Aclame:pro 1 MAQIVD-VYGNPIRTQ---QLREPQTSRLA-GLAKEFAQHPAKGLTPAKLARILVEAEQGN--LQAQAELFMD------M 67 (526) Q Consensus 1 m~~~~~-~~g~p~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~--~~~~~~l~~~------m 67 (526) |.-++- +++.|-.-+ .+... ..... -+.+-+..|..+ ..++.. +..--.|. +... .-+.+ - T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~i~~~~~~---~~~~~~-l~~Yy~g~~~i~~~-~~~~~~~~~~~~ 74 (474) T protein:vir:95 1 MINIIRMPWDKPYGEEVVEQMKPK-VETQEEMIIRLINNHKQK---LKDINV-GQKYYDKDNDINYQ-AYKQDLHGNIDY 74 (474) T ss_pred CcccccCCCCCCCCcchhhhcccc-ccchHHHHHHHHHHHHHH---HHHHHH-HHHHhcccCccccc-cchhhhcccccc Confidence 443221 122221110 01000 00000 111111222110 111111 11111111 0000 00000 0 Q ss_pred Hh-----ccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEE Q lcl|Aclame:pro 68 EE-----RDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEW 141 (526) Q Consensus 68 ~~-----~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w 141 (526) .. ......-.+.....-+.+.+..+...+ .+..+.+.+++.+ +|.+.+.++. ++.-||.+ ++++| T Consensus 75 ~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~~------~~~~~~l~~~~~n--~~~~~~~~l~~~~~~~G~~-~~~~~ 145 (474) T protein:vir:95 75 TKPDWRITTNFHQNLVDQKVSYVAGKPVTYAHDD------DKVLDVIHQVLDT--RWDNKLIDILTAASNKGID-WLQVY 145 (474) T ss_pred cccccccccchHHHHHHhhhhhhcccCceeccCC------hHHHHHHHHHHhc--cHHHHHHHHHHHHhhCCeE-EEEee Confidence 00 123334455566667778887776422 2344667777653 4777777666 68889995 46667 Q ss_pred eecCCeeEEeeeeeecCce-e-EecccC-Cce---EE-eccCCCCceeec-CCCeEEEeec------------------- Q lcl|Aclame:pro 142 ALQGREWMPLAFHHRPQSW-F-QLNPED-QNE---LR-LRDNSPAGEALQ-PFGWIIHRPR------------------- 194 (526) Q Consensus 142 ~~~~g~~~~~~l~~r~~~~-f-~~~~~~-~~~---l~-~~~~~~~g~~lp-~~k~i~~~~~------------------- 194 (526) ...+|.+... ..+|.. | .|+... +.. ++ +...+.....++ +.....++.. T Consensus 146 ~d~~~~~~i~---~~~p~~~~~v~d~~~~~~~~a~ir~~~~~~~~~~~vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (474) T protein:vir:95 146 INEDGELKLF---RVPAEQAIPIWTDKEREQLNAFIRIFTFNGETKVEYWTAETVTYYVYENGGLIPDFYYGDEHIQTHF 222 (474) T ss_pred eCCCCceEEE---EEcccceEEEEcCCCCCceEEEEEEEeecCeeEEEEEeCCeEEEEEEcCCceeeccccccccccCcc Confidence 5445554332 233321 1 122111 110 00 000111111111 1111111100 Q ss_pred -----------CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHhhcCeE Q lcl|Aclame:pro 195 -----------ARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGHAAA 263 (526) Q Consensus 195 -----------~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~~~~ 263 (526) .-..++.|.|.+..+....=--...++.++..++.|+.|+++.+--.+ ++.. ....++....+ T Consensus 223 ~~~~~~~vPvv~~~nn~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~---~~~~---~~~~~~~~~~~ 296 (474) T protein:vir:95 223 STGSWERVPFIAFKNNPEEVSDIWMYKSFVDAIDKRLSDVQNMFDESVELIYILRGYEG---EDLS---EFMEGLKYYKA 296 (474) T ss_pred cccCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcCCCc---cccc---chhhhhhccce Confidence 002467889998886555544466789999999999999888763222 2111 12223455567 Q ss_pred EEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhH-HHHHH--HHHHHHHHHHHHHH Q lcl|Aclame:pro 264 GIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQ-VHNEV--RHDLLASDARQLAA 340 (526) Q Consensus 264 ~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~-vh~~v--~~~~~~ad~~~i~~ 340 (526) +.++.+.+++++... .....++.+++.+.+.|...-.+..++.+.. |+...|. ..... ....+..-.+.+.. T Consensus 297 i~~~~~~~~~~l~~~-~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~----~~n~Sg~Alk~~~~~l~~k~~~~~~~~~~ 371 (474) T protein:vir:95 297 INVSSDGGVETIQVE-VPVASTKEYLDMMRAYIVEFGQGVDFQTDKF----GSATSGIALKFLYTNLNLKANKLKNKANV 371 (474) T ss_pred eeccCCCceeEEecc-CCHHHHHHHHHHHHHHHHHHhCCcCcccccc----ccccHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 778999999999743 4556788899999999988775555543321 1111111 11111 11222223345555 Q ss_pred HHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCC-CCCccchhcccCC Q lcl|Aclame:pro 341 TLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIP-QPAKNEPVLRSAA 419 (526) Q Consensus 341 ~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp-~~~~~e~~~~~~~ 419 (526) .|. ++++.++.+.... .......+.|....+.|..+.++.++ ..|+ +|.+.+.+.++.- .+..+-+-+.... T Consensus 372 ~l~-~~~~~i~~~~g~~--~d~~~i~i~f~~~~p~~~~e~a~~~~---~~gi-iS~et~~~~lp~v~D~~~E~eri~~E~ 444 (474) T protein:vir:95 372 ALQ-ELMQFILDFNKIK--LDAKEIEITFNFNVMVNDLEQSQIGA---QSQY-LSKETLVRHHPWVDDPKAELERLDEEQ 444 (474) T ss_pred HHH-HHHHHHHHHhCCC--cccceeeEEecCCCccCHHHHHHHHH---HcCC-CChHHHHHhCCCCCCHHHHHHHHHHHH Confidence 553 4566666553211 11223467788888888887777654 4687 8999898998752 2221101110000 Q ss_pred Ccc--cccccccccccccccccccccccccc Q lcl|Aclame:pro 420 QPA--ILSRQHGQRVAALATIVGPRYGDQQA 448 (526) Q Consensus 420 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (526) ... .............. ......+.+.. T Consensus 445 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~ 474 (474) T protein:vir:95 445 LELNKQLPNLDDGGADGAQ-QQQQSENNQSK 474 (474) T ss_pred HHHHhhccccccccCCCCC-CcCCCCccccC Confidence 000 00000000000000 00000000000 No 157 >protein:vir:96266 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240308;genbank:gi:66395972;genbank:GeneID:5133343 Probab=98.59 E-value=2.4e-07 Score=56.92 Aligned_cols=411 Identities=11% Similarity=0.024 Sum_probs=179.8 Q ss_pred CCeeec-CCCCccCcc---ccchhhhhhhh-hhhhhhhhhhhcccCHHHHHHHHHcccCCC--HHHHHHHHHH------H Q lcl|Aclame:pro 1 MAQIVD-VYGNPIRTQ---QLREPQTSRLA-GLAKEFAQHPAKGLTPAKLARILVEAEQGN--LQAQAELFMD------M 67 (526) Q Consensus 1 m~~~~~-~~g~p~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~--~~~~~~l~~~------m 67 (526) |.-++- +++.|-.-+ .+... ..... -+.+-+..|..+ ..++.. +..--.|. +... .-+.+ - T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~i~~~~~~---~~~~~~-l~~Yy~g~~~i~~~-~~~~~~~~~~~~ 74 (474) T protein:vir:96 1 MINIIRMPWDKPYGEEVVEQMKPK-VETQEEMIIRLINNHKQK---LKDINV-GQKYYDKDNDINYQ-AYKQDLHGNIDY 74 (474) T ss_pred CcccccCCCCCCCCcchhhhcccc-ccchHHHHHHHHHHHHHH---HHHHHH-HHHHhcccCccccc-cchhhhcccccc Confidence 443221 122221110 01000 00000 111111222110 111111 11111111 0000 00000 0 Q ss_pred Hh-----ccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEE Q lcl|Aclame:pro 68 EE-----RDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEW 141 (526) Q Consensus 68 ~~-----~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w 141 (526) .. ......-.+.....-+.+.+..+...+ .+..+.+.+++.+ +|.+.+.++. ++.-||.+ ++++| T Consensus 75 ~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~~------~~~~~~l~~~~~n--~~~~~~~~l~~~~~~~G~~-~~~~~ 145 (474) T protein:vir:96 75 TKPDWRITTNFHQNLVDQKVSYVAGKPVTYAHDD------DKVLDVIHQVLDT--RWDNKLIDILTAASNKGID-WLQVY 145 (474) T ss_pred cccccccccchHHHHHHhhhhhhcccCceeccCC------hHHHHHHHHHHhc--cHHHHHHHHHHHHhhCCeE-EEEee Confidence 00 123334455566667778887776422 2344667777653 4777777666 68889995 46667 Q ss_pred eecCCeeEEeeeeeecCce-e-EecccC-Cce---EE-eccCCCCceeec-CCCeEEEeec------------------- Q lcl|Aclame:pro 142 ALQGREWMPLAFHHRPQSW-F-QLNPED-QNE---LR-LRDNSPAGEALQ-PFGWIIHRPR------------------- 194 (526) Q Consensus 142 ~~~~g~~~~~~l~~r~~~~-f-~~~~~~-~~~---l~-~~~~~~~g~~lp-~~k~i~~~~~------------------- 194 (526) ...+|.+... ..+|.. | .|+... +.. ++ +...+.....++ +.....++.. T Consensus 146 ~d~~~~~~i~---~~~p~~~~~v~d~~~~~~~~a~ir~~~~~~~~~~~vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (474) T protein:vir:96 146 INEDGELKLF---RVPAEQAIPIWTDKEREQLNAFIRIFTFNGETKVEYWTAETVTYYVYENGGLIPDFYYGDEHIQTHF 222 (474) T ss_pred eCCCCceEEE---EEcccceEEEEcCCCCCceEEEEEEEeecCeeEEEEEeCCeEEEEEEcCCceeeccccccccccCcc Confidence 5445554332 233321 1 122111 110 00 000111111111 1111111100 Q ss_pred -----------CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHhhcCeE Q lcl|Aclame:pro 195 -----------ARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGHAAA 263 (526) Q Consensus 195 -----------~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~~~~ 263 (526) .-..++.|.|.+..+....=--...++.++..++.|+.|+++.+--.+ ++.. ....++....+ T Consensus 223 ~~~~~~~vPvv~~~nn~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~---~~~~---~~~~~~~~~~~ 296 (474) T protein:vir:96 223 STGSWERVPFIAFKNNPEEVSDIWMYKSFVDAIDKRLSDVQNMFDESVELIYILRGYEG---EDLS---EFMEGLKYYKA 296 (474) T ss_pred cccCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcCCCc---cccc---chhhhhhccce Confidence 002467889998886555544466789999999999999888763222 2111 12223455567 Q ss_pred EEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhH-HHHHH--HHHHHHHHHHHHHH Q lcl|Aclame:pro 264 GIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQ-VHNEV--RHDLLASDARQLAA 340 (526) Q Consensus 264 ~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~-vh~~v--~~~~~~ad~~~i~~ 340 (526) +.++.+.+++++... .....++.+++.+.+.|...-.+..++.+.. |+...|. ..... ....+..-.+.+.. T Consensus 297 i~~~~~~~~~~l~~~-~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~----~~n~Sg~Alk~~~~~l~~k~~~~~~~~~~ 371 (474) T protein:vir:96 297 INVSSDGGVETIQVE-VPVASTKEYLDMMRAYIVEFGQGVDFQTDKF----GSATSGIALKFLYTNLNLKANKLKNKANV 371 (474) T ss_pred eeccCCCceeEEecc-CCHHHHHHHHHHHHHHHHHHhCCcCcccccc----ccccHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 778999999999743 4556788899999999988775555543321 1111111 11111 11222223345555 Q ss_pred HHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCC-CCCccchhcccCC Q lcl|Aclame:pro 341 TLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIP-QPAKNEPVLRSAA 419 (526) Q Consensus 341 ~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp-~~~~~e~~~~~~~ 419 (526) .|. ++++.++.+.... .......+.|....+.|..+.++.++ ..|+ +|.+.+.+.++.- .+..+-+-+.... T Consensus 372 ~l~-~~~~~i~~~~g~~--~d~~~i~i~f~~~~p~~~~e~a~~~~---~~gi-iS~et~~~~lp~v~D~~~E~eri~~E~ 444 (474) T protein:vir:96 372 ALQ-ELMQFILDFNKIK--LDAKEIEITFNFNVMVNDLEQSQIGA---QSQY-LSKETLVRHHPWVDDPKAELERLDEEQ 444 (474) T ss_pred HHH-HHHHHHHHHhCCC--cccceeeEEecCCCccCHHHHHHHHH---HcCC-CChHHHHHhCCCCCCHHHHHHHHHHHH Confidence 553 4566666553211 11223467788888888887777654 4687 8999898998752 2221101110000 Q ss_pred Ccc--cccccccccccccccccccccccccc Q lcl|Aclame:pro 420 QPA--ILSRQHGQRVAALATIVGPRYGDQQA 448 (526) Q Consensus 420 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (526) ... .............. ......+.+.. T Consensus 445 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~ 474 (474) T protein:vir:96 445 LELNKQLPNLDDGGADGAQ-QQQQSENNQSK 474 (474) T ss_pred HHHHhhccccccccCCCCC-CcCCCCccccC Confidence 000 00000000000000 00000000000 No 158 >protein:vir:80680 Length: 441 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285579;genbank:gi:148727085;genbank:GeneID:5247051 Probab=98.51 E-value=4e-07 Score=55.66 Aligned_cols=393 Identities=9% Similarity=0.003 Sum_probs=160.3 Q ss_pred cchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHH----HHHHHHHhccHHHHHHHHHHHHHHhcCCceE Q lcl|Aclame:pro 17 LREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQA----ELFMDMEERDAHLFAEMSKRKRAILGLDWAV 92 (526) Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~----~l~~~m~~~D~~v~s~l~~Rk~av~~~~w~v 92 (526) +..+....+..+.+.+..+..+ ...+.+-.+. .+ .+.... .-+.+....-....-++++....+..-.|. T Consensus 1 ~~~~~~~~i~~l~~~~~~~~~r---~~~l~~Yy~G-~~-~i~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~~g~~- 74 (441) T protein:vir:80 1 MNSDELALIEGMYDRIQRLSSW---HCCIEGYYEG-SN-RVRDLGVAIPPELQRVQTVVSWPGIAVDALEERLDWLGWT- 74 (441) T ss_pred CCccHHHHHHHHHHHHHHHHHH---HHHHHHHHhc-CC-cchhcCcccchhhhhhhhhcchHHHHHHHHHhhhcccccc- Confidence 3333333333332222221110 0111111100 00 000000 000000000111111111111111111121 Q ss_pred ecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCcee--EecccCCc Q lcl|Aclame:pro 93 EPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQSWF--QLNPEDQN 169 (526) Q Consensus 93 ~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f--~~~~~~~~ 169 (526) .+ +++ .+.+++... .|...+.++. ++..||.| .+++|...+|...+. ..+|... .++...+. T Consensus 75 ----~~--d~~----~l~~i~~~n-~~~~~~~~~~~~~~~~G~a-~~~v~~d~~g~~~i~---~~~p~~~~~i~d~~~~~ 139 (441) T protein:vir:80 75 ----NG--DGY----GLDGVYAAN-RLATASCDVHLDALIFGLS-FVAIIPHGDGTVSVR---PQSPKNCTGKFSADGSR 139 (441) T ss_pred ----CC--ChH----HHHHHHHhc-CHHHHHHHHHHHHhhcCee-EEEEEeCCCCceEEE---EEccceEEEEEeCCCCc Confidence 11 111 244555443 4777777765 78899987 567886555654332 2222211 12211110 Q ss_pred -------------------------eEEeccCCCCc--------eeecCCCeEEEeecCCCCccccchhHHH-HHHHHHH Q lcl|Aclame:pro 170 -------------------------ELRLRDNSPAG--------EALQPFGWIIHRPRARSGYVARSGLFRV-LAWPYLF 215 (526) Q Consensus 170 -------------------------~l~~~~~~~~g--------~~lp~~k~i~~~~~~~~g~p~g~gLl~~-~~~~~~f 215 (526) .......+..+ .++...-++.+.+....+.|+|.|-+.. +-...=- T Consensus 140 ~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~l~~~v~~liDa 219 (441) T protein:vir:80 140 LDAGLVVQQTCDPEVVEAELLLPDVIVQVERRGSREWVEVDRIPNVLGAVPLVPIVNRRRTSRIDGRSEITRSIRAYTDE 219 (441) T ss_pred eeEEEEEEEEecCceEEEEEEecCeEEEEEEcCCcceeeccccccCCCceeEEEeeccccCCccCCcccchhhHHHHHHH Confidence 00010011000 0111112344566777888899885533 3222222 Q ss_pred HHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHhhcCeEEEecCCce---EEEeecCCCChHHHHHHHHHH Q lcl|Aclame:pro 216 RHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGHAAAGIIPETMA---IDFQQAAQGSSEPFLAMMRQS 292 (526) Q Consensus 216 K~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~~~~~iip~~~~---ie~~~a~~~~~~~~~~li~~~ 292 (526) -...+.+++...+.|+.|.++.+- ...++.... ..++..+.+..+|.+.+ +++.+...++.+.|.+.++-+ T Consensus 220 ~~~~~s~~~~~~~~~~~~~~~i~G-~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (441) T protein:vir:80 220 AVRTLLGQSVNRDFYAYPQRWVTG-VSADEFSQP-----GWVLSMASVWAVDKDDDGDTPNVGSFPVNSPTPYSDQMRLL 293 (441) T ss_pred HHHHHHHHHHHHHhhcCceeeeec-CCccccccc-----hhhhcccccccCCCCCCCCcceeEecCccchHHHHHHHHHH Confidence 345567788889999999888752 111111111 12223345555665533 455554444555666666655 Q ss_pred HHHHHHHHhchhhhcccccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-CCCCCCcccceeEEe Q lcl|Aclame:pro 293 EDAISKAVLGGTLTSTTSQS-GGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVL-N-RPGSPDVRRAPRLVF 369 (526) Q Consensus 293 d~~Isk~ilGqtltt~~~~~-~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~-N-f~~~~~~~~~p~~~~ 369 (526) -.+|+..---+ ...-.+++ +.+|...-.....-....+..-.+.+...|. ++++.++.+ | .........-..++| T Consensus 294 i~~~~~~~~~p-~~~~g~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~-~~~~l~~~~~~~~~~~~~~~~~i~~~f 371 (441) T protein:vir:80 294 AQLTAGEAAVP-ERYFGFITSNPPSGEALAAEESRLVKRAERRQTSFGQGWL-SVGFLAAKALDSRVDEADFFGDVGLRW 371 (441) T ss_pred HHHHhcccCCC-HHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCcccccceeeeEEe Confidence 56665442111 00000000 0112211112222233333344455555554 345555544 2 222111112346778 Q ss_pred cCccccCHHHHHHHHHHHHhCCCc-CCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccccccc Q lcl|Aclame:pro 370 DLREQADITSMAQSIPALVNVGLE-IPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQA 448 (526) Q Consensus 370 ~~~e~edl~~~a~~~~~l~~~G~~-v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (526) ....+.++.+.++.+.+|+..|.. ++.+.+.+.+|+.+.+. +.+... ...+. .......+ T Consensus 372 ~~~~~~~~~e~ad~~~kl~~~g~~~~s~~~~~~~l~~~~~e~-~~~~~e-~~e~~--~~~~~~~~--------------- 432 (441) T protein:vir:80 372 RDASTPTRAATADAVTKLVGAGILPADSRTVLEMLGLDDVQV-EAVMRH-RAESS--DPLAVLAG--------------- 432 (441) T ss_pred CCCCCcCHHHHHHHHHHHHhcCcccccHHHHHHhCCCCHHHH-HHHHHH-HHHHH--HHHHHHhh--------------- Confidence 888999999999999999999975 56777889998864321 111110 00000 00000000 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 449 LDKALADLPAKDMQNQANDLLAPL 472 (526) Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~i 472 (526) ....--.+| T Consensus 433 ---------------~~~~~~~~~ 441 (441) T protein:vir:80 433 ---------------AISRQTNEV 441 (441) T ss_pred ---------------hhhcccccC Confidence 000000001 No 159 >protein:vir:107112 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950601;genbank:gi:119953681;genbank:GeneID:4643121 Probab=98.50 E-value=4.4e-07 Score=55.44 Aligned_cols=417 Identities=10% Similarity=-0.022 Sum_probs=188.6 Q ss_pred CCeeecCCCCccCccccch--hhh-hhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCH--HHH-HH----HHHHHH-- Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLRE--PQT-SRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNL--QAQ-AE----LFMDME-- 68 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~--~~~-~~----l~~~m~-- 68 (526) |..|==+...|+..+-++. +.. ..-..+.+-+..|.. ...++.. +..--.|.. ... .. ...... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~---~~~r~~~-~~~Yy~g~~~i~~~~~~~~~~~~~~~~~~ 76 (478) T protein:vir:10 1 MISINWPWDKPYHEQVVEQIKPKYETQEEMILRLVREHKE---NIDNITM-GERYYNHHPDILDAPFKRDVNGDYDETKP 76 (478) T ss_pred CccccccCCchhhhHHHHHhhhccCChHHHHHHHHHHHHH---HHHHHHH-HHHHhcccccccccchhhhcccccccccc Confidence 7765444455544222211 111 000112222222211 1122221 111112210 000 00 000000 Q ss_pred ---hccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeec Q lcl|Aclame:pro 69 ---ERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQ 144 (526) Q Consensus 69 ---~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~ 144 (526) -.-+...-.+.+...-+.+-+..+...+ ....+.+.+++.+ +|.+.+.++. ++.-||.+. +++|... T Consensus 77 ~~ki~~n~~k~ivd~~~~yl~g~p~~~~~~~------~~~~~~l~~~~~n--~~~~~~~~~~~~~~~~G~~~-~~v~~d~ 147 (478) T protein:vir:10 77 DWRMYTNYHQNLVDQKVAYAVANPVTFGVDN------DKALKQIQHTLNH--KWDDKLVDILTAASNKGIEW-VQPYVDE 147 (478) T ss_pred cceeccchHHHHHHHHhhhhcccCceeecCC------hHHHHHHHHHHhc--cHHHHHHHHHHHHhhCCeEE-EEEEecC Confidence 0135556666667777788887775322 2344566677653 4777766654 688899865 6666554 Q ss_pred CCeeEEeeeeeecCcee--EecccCCceE----Ee-ccCCCCceeec-CCCeEEEeecC--------------------- Q lcl|Aclame:pro 145 GREWMPLAFHHRPQSWF--QLNPEDQNEL----RL-RDNSPAGEALQ-PFGWIIHRPRA--------------------- 195 (526) Q Consensus 145 ~g~~~~~~l~~r~~~~f--~~~~~~~~~l----~~-~~~~~~g~~lp-~~k~i~~~~~~--------------------- 195 (526) +|.+.+. ..+|..+ .|+......+ +. ...+.....+. +.++..++... T Consensus 148 ~~~~~~~---~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (478) T protein:vir:10 148 EGEFKTF---RVPAEQAVPIWTNKERDELQAFIRVYELDGAERVEYWTKDDVTFYELKEGQLIPDFYRSEDHIQPHYYQG 224 (478) T ss_pred CCceEEE---EEcccceEEEEcCCCCCceEEEEEEEeeeCceEEEEEeCCcEEEEEecCCeeeccccccccccccceecc Confidence 5554433 2232221 1221100000 00 00011111111 11111111100 Q ss_pred -------------CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHhhcCe Q lcl|Aclame:pro 196 -------------RSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGHAA 262 (526) Q Consensus 196 -------------~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~~~ 262 (526) -..++.|.|.+..+....=-=...+..++..++.|..|+++.+--.+.... +...++.... T Consensus 225 ~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liDa~~~~~S~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~~~~~~ 298 (478) T protein:vir:10 225 NKLMSWGRVPFIPFKNNPQEVSDLFMYKTIIDALDKRLSDTQNTFDESVELIYILKGYEGEDMK------DFMHNLKYYK 298 (478) T ss_pred cccccCCcceEEEeccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCcceeeecCCccccc------chhhhhhhCc Confidence 013667899888865555555557788888899999998887642222111 1223333444 Q ss_pred EEEec--CCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 263 AGIIP--ETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAA 340 (526) Q Consensus 263 ~~iip--~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~ 340 (526) ++.++ .|.+++++.. ......++..++.+.+.|...--+..++.+...| ..|...-+....-....+..-.+.+.. T Consensus 299 ~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~-n~Sg~Ai~~~~~~l~~k~~~~~~~~~~ 376 (478) T protein:vir:10 299 AISVAGESGSGVDTIKV-EVPIDSVKEYTKMLRDYIIEFGQGVDFQQDKFGN-SPSGIALKFMYSNLDLKANKLKNKTLT 376 (478) T ss_pred eeEecCCCCCcceEEee-cCCHHHHHHHHHHHHHHHHHHhCCcCcCcccccc-chHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 55553 5578899864 3456678889999999998886555554432211 122211111111222333444556666 Q ss_pred HHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCC-CCCCccchhcccCC Q lcl|Aclame:pro 341 TLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGI-PQPAKNEPVLRSAA 419 (526) Q Consensus 341 ~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Gl-p~~~~~e~~~~~~~ 419 (526) .+. ++++.++.+...... ..-..+.|....+.|..+.++.+.++. |+ +|.+.+.+.++. ..+..+-+-+.... T Consensus 377 ~l~-~~~~li~~~~~~~~d--~~~i~i~f~~~~p~~~~e~~~~~~~~~--g~-iS~et~i~~~~~v~d~~~E~~ri~~E~ 450 (478) T protein:vir:10 377 ALQ-ELLQYIIDFYRLDVR--VQDIEITFNFNVMVNELENSQIAMNST--GL-LSKETILGNHSWVQDPVAEMERIEQEN 450 (478) T ss_pred HHH-HHHHHHHHHhCCCcc--cccceEEeCCCCCCCHHHHHHHHHHHh--CC-CChHHHHHhCCCCCCHHHHHHHHHHHH Confidence 664 466666655432221 123567888888899999999988874 65 888888888864 33221100011000 Q ss_pred Ccccccccccccccccccccccccccccch Q lcl|Aclame:pro 420 QPAILSRQHGQRVAALATIVGPRYGDQQAL 449 (526) Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (526) ................ .........+.. T Consensus 451 ~~~~~~~~~~~~~~~d--~~~~~~~d~~~e 478 (478) T protein:vir:10 451 IELNQQLPDIEEGLND--EQQRQSEDNQSE 478 (478) T ss_pred HHHHHhccccCCCCcc--cccccCcCCCCC Confidence 0000000000000000 000000000000 No 160 >protein:vir:78227 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491663;genbank:gi:157786487;genbank:GeneID:5625705 Probab=98.48 E-value=4.9e-07 Score=55.19 Aligned_cols=407 Identities=11% Similarity=0.040 Sum_probs=163.2 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHH-HHHHHHHH---hccHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQ-AELFMDME---ERDAHLFA 76 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~-~~l~~~m~---~~D~~v~s 76 (526) |++-.+ .+..+.+.+..+. -...++.+-.+.- + ++... ...-+.+. ..-....- T Consensus 1 ~~t~~~-----------------~i~~L~~~~~~~~---~r~~~l~~Yy~G~-~-~i~~~~~~~~~~~~~~~~~~n~~~~ 58 (480) T protein:vir:78 1 MTTYHE-----------------HVERLQGLLARDL---PNLLEAEAYRNGT-R-RLKTIGIGAPPELAYLDVQPGWVAT 58 (480) T ss_pred CCCHHH-----------------HHHHHHHHHHHHH---HHHHHHHHHHhcc-c-cccccccccchhHhhhhhhcchHHH Confidence 332111 1111111111110 0111111111100 0 00000 00000000 00111122 Q ss_pred HHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEee------cCCeeE Q lcl|Aclame:pro 77 EMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWAL------QGREWM 149 (526) Q Consensus 77 ~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~------~~g~~~ 149 (526) ++++....+....|.+ ++++ ...+.+.++++.. .|+.....++ +|..||.| ++++|.- .+|... T Consensus 59 ivd~~~~~l~~~g~~~--~~d~-----~~~~~l~~i~~~N-~~d~~~~~~~~~a~~~G~a-y~~v~~~~~~~~d~~g~~~ 129 (480) T protein:vir:78 59 YLRTLSDRLDIEGFRI--SEDS-----EGLEELWNWWQAN-DLDEESVLGHDDSLTFGRS-YITVSHPDVESGDPAGIPL 129 (480) T ss_pred HHHHHHhhhccCceec--CCCc-----hhHHHHHHHHHhc-CHHHHHHHHHHHHhhcCce-EEEEecCccccCCCCCeeE Confidence 2222222222233322 2221 2234455666543 4777777765 79999986 5677742 123222 Q ss_pred EeeeeeecCcee--Eeccc----------------C------------CceEEeccCCCC-------cee----ecCCCe Q lcl|Aclame:pro 150 PLAFHHRPQSWF--QLNPE----------------D------------QNELRLRDNSPA-------GEA----LQPFGW 188 (526) Q Consensus 150 ~~~l~~r~~~~f--~~~~~----------------~------------~~~l~~~~~~~~-------g~~----lp~~k~ 188 (526) +. ..++... .+++. + +....++..+.. +.. ++.--+ T Consensus 130 i~---~~~p~~~~~~~D~~~~~~~~~~i~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPv 206 (480) T protein:vir:78 130 IR---VESPLYMYAELDPRNTRRVTRAVRLYTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPV 206 (480) T ss_pred EE---EEcccceEEEEcCCCccceEEEEEEEEeecCCCceEEEEEEeCCeEEEEEecCCCccccccccccccCCCCCcce Confidence 21 2222111 11110 0 001111111100 111 222234 Q ss_pred EEEeecCCCCccccchhHHH-HHHHHHHHHHHHHHHHHHHHHcCCceEEEecC--CCCCHHHHHHHHHHHHHhhcCeEEE Q lcl|Aclame:pro 189 IIHRPRARSGYVARSGLFRV-LAWPYLFRHYATSDLAEMLEIYGLPIRLGKYP--PGTADEEKATLLRAVTGLGHAAAGI 265 (526) Q Consensus 189 i~~~~~~~~g~p~g~gLl~~-~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~--~~~~~~e~~~l~~al~~~~~~~~~i 265 (526) +.+++....+.|+|.|-+.. +....=-=...+..++...+.|+.|.++.+-- ....++.....+. ...+.... T Consensus 207 v~f~n~~~~~~~~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~----~~~~~~~~ 282 (480) T protein:vir:78 207 VPLTNDPRLGNRYGRSEISPELRKVTDAASRTLMNLQSASQILGTPLRVISGVTTDELTNDGENTTLD----IYYGRILT 282 (480) T ss_pred EEeecccccCCccCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcCCccccccccccchhh----hhhhhhcc Confidence 55677777888999987764 32222222556778888999999998776521 1111111111111 11222222 Q ss_pred ecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcc-cccccchhh-hhhHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 266 IPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTST-TSQSGGGAF-ALGQVHNEVRHDLLASDARQLAATLS 343 (526) Q Consensus 266 ip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~-~~~~~~gS~-a~~~vh~~v~~~~~~ad~~~i~~~ln 343 (526) . .|.+.++.+-...+...|...++.+-.+|+...--+.-..+ .+.+ .+|. |+ .....-....++.-.+.+...|. T Consensus 283 ~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~n-~~Sg~Al-k~~~~~l~~ka~~~~~~f~~~l~ 359 (480) T protein:vir:78 283 L-ASEAAKISEFKAAELRNFAEEMEVFRKEAASITGLPPQYLSSSSEN-PASAEAI-IATDSRIVKMAERKGRIFGGAWE 359 (480) T ss_pred C-CCCCceEEecCccCHHHHHHHHHHHHHHHhcccCCChHHhccccCc-chHHHHH-HHHHHHHHHHHHHHHHHHHHHHH Confidence 2 35567777765556677777777777777654211111110 0000 1122 22 22222233334444455556664 Q ss_pred HHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCC-CcCCHHHHHHHhCCCCCCccchhccc----- Q lcl|Aclame:pro 344 RDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVG-LEIPSAWVYDKLGIPQPAKNEPVLRS----- 417 (526) Q Consensus 344 ~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G-~~v~~~~~~e~~Glp~~~~~e~~~~~----- 417 (526) ++++.++.+..........--.++|......++.+.++.+.+|+.+| ..++.+.+.+.+|+.+.... ++... T Consensus 360 -~~~~l~~~~~g~~~~~~~~~i~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~lg~~~d~~~-~~~~~~~e~~ 437 (480) T protein:vir:78 360 -RAMRIAMQIMGREVTEEYTRLETVWRDPSTPTVAAKADAVSKLYANGQGPIPKEQARIDLGYTATQRE-QMRDWDKQET 437 (480) T ss_pred -HHHHHHHHHcCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHHhccccCCHHHHHhcCCCCHhHHH-HHHHHHHHHH Confidence 35666666653221111111244666666778889999999999877 35789999999998643221 11100 Q ss_pred ------CC--Ccccccccccccccc--cccccccccccccchHHHHHHH Q lcl|Aclame:pro 418 ------AA--QPAILSRQHGQRVAA--LATIVGPRYGDQQALDKALADL 456 (526) Q Consensus 418 ------~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 456 (526) .. ....+........+. ..+..++....+... . T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 480 (480) T protein:vir:78 438 EDMIDTLYSTTKAQADATPKPTVTETKTETQTSPSGFNRTKT------R 480 (480) T ss_pred HHHHHHhhccccccCCCCCCCCCCCCCCccccccCCCCcccC------C Confidence 00 000000000000000 000000000000000 0 No 161 >protein:vir:2427 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046829;genbank:gi:9630397;genbank:GeneID:1261620 Probab=98.48 E-value=5.1e-07 Score=55.10 Aligned_cols=422 Identities=11% Similarity=-0.002 Sum_probs=162.0 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHccc------CCCHHHHHHHHHHHHhccHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAE------QGNLQAQAELFMDMEERDAHL 74 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~------~g~~~~~~~l~~~m~~~D~~v 74 (526) |.-++.-.=.+.... -.+-.+.+.+..+.. ...++.+-.+.-- ..-...+..+ ...=... T Consensus 1 ~~~~i~~~~~~~~~~-------~~~~~L~~~~~~~~~---r~~~~~~YY~G~~~i~~~~~~~~~~~~~~----~~~~n~~ 66 (485) T protein:vir:24 1 MTAPLPGQEEIADPA-------IARDEMVSAFEDQNQ---NLRSNTSYYEAERRPEAIGVTVPVQMQSL----LAHVGYP 66 (485) T ss_pred CCCCCCCCCcccchH-------HHHHHHHHHHHHHHH---HHHHHHHHHhccCchhhcCcccchhhhhh----hhccchH Confidence 222111111111000 000111111111110 0011111110000 0000000000 0000111 Q ss_pred HHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEE--- Q lcl|Aclame:pro 75 FAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMP--- 150 (526) Q Consensus 75 ~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~--- 150 (526) .-++++....+....|.+ +++ +..+ +.+.+++... .|+....++. ++.-||.| ++++|...++.... T Consensus 67 ~~ivd~~~~~l~~~g~~~--~~~-~~~~----~~l~~i~~~N-~~d~~~~~~~~~a~i~G~a-y~~v~~~~~~~~~~~~~ 137 (485) T protein:vir:24 67 RLYVDSIAERQAVEGFRL--GDA-DEAD----EELWQWWQAN-NLDIEAPLGYTDAYVHGRS-YITISRPDPQIDLGWDP 137 (485) T ss_pred HHHHHHHhhhhccCceec--CCC-chhH----HHHHHHHHhc-ChhHHHHHHHHHHhhcCce-EEEEecCCcccccccCC Confidence 222233222233334433 222 2222 2344555442 4677666666 68899997 55566432211000 Q ss_pred --eeeeeecCcee--Eeccc---------------C-----------CceEEeccCCCCc-------eeecCCCeEEEee Q lcl|Aclame:pro 151 --LAFHHRPQSWF--QLNPE---------------D-----------QNELRLRDNSPAG-------EALQPFGWIIHRP 193 (526) Q Consensus 151 --~~l~~r~~~~f--~~~~~---------------~-----------~~~l~~~~~~~~g-------~~lp~~k~i~~~~ 193 (526) ..+...+|+.. .++.. + .....+...+... .++...-++.|.+ T Consensus 138 ~~~~i~~~~p~~~~~i~D~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n 217 (485) T protein:vir:24 138 NVPLIRVEPPTRMYAEIDPRIGRPAKAIRVAYDAEGNEIQAATLYTPNETFGWFRAEGEWVEWFSDPHGLGAVPVVPLPN 217 (485) T ss_pred CcceEEEeccceeEEEeeCCcCceeEEEEEEEeecCCeEEEEEEEcCCcEEEEEecCCceEeecccccCCCcccEEEecc Confidence 01111222111 11100 0 0011111111111 1122223455667 Q ss_pred cCCCCccccchhHHH-HHHHHHHHHHHHHHHHHHHHHcCCceEEEec--CCCCCHHHHHHHHHHHHHhhcCeEEEecCCc Q lcl|Aclame:pro 194 RARSGYVARSGLFRV-LAWPYLFRHYATSDLAEMLEIYGLPIRLGKY--PPGTADEEKATLLRAVTGLGHAAAGIIPETM 270 (526) Q Consensus 194 ~~~~g~p~g~gLl~~-~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~--~~~~~~~e~~~l~~al~~~~~~~~~iip~~~ 270 (526) +.+.+.|+|.|-+.. +....=--...+...+...+.|+.|.++.+- +.....++. .- ..+-....+....+| +. T Consensus 218 ~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~-~~-~~~~~~~~~~i~~~~-~~ 294 (485) T protein:vir:24 218 RTRLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVDPE-TG-QTLFDAYLARILAFE-DA 294 (485) T ss_pred CcccCCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhccCCccccccccc-cc-cchhhhcccceeccC-CC Confidence 777788899987754 3222222345567788889999999887652 111100000 00 111122333334444 34 Q ss_pred eEEEeecCCCChHHHHHHHHHHHHHHHHHHhch--hhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 271 AIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGG--TLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLW 348 (526) Q Consensus 271 ~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGq--tltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~ 348 (526) +.+|.+-..++...|...++.+-.++|...--+ .+... ..+..+.-|+ .....-....++.-.+.+...|+ ++++ T Consensus 295 ~~~~~q~~~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~-~~n~~Sg~Al-~~~~~~l~~ka~~~~~~f~~~l~-~~~~ 371 (485) T protein:vir:24 295 EGKIQQFSAAELANFTNALDQIAKQVAAYTGLPPQYLSTA-ADNPASAEAI-RAAESRLIKKVERKNAIFGGAWE-EAMR 371 (485) T ss_pred CceEEeecccchHHHHHHHHHHHHHHhcccCCCHHHhccc-cCcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHH Confidence 566666444455556666665566665432111 11110 0110111122 22233334444555566666775 3555 Q ss_pred HHHHh-cCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCC-cCCHHHHHHHhCCCCCCccchhcc----cCCC-c Q lcl|Aclame:pro 349 PLLVL-NRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGL-EIPSAWVYDKLGIPQPAKNEPVLR----SAAQ-P 421 (526) Q Consensus 349 ~l~~~-Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~-~v~~~~~~e~~Glp~~~~~e~~~~----~~~~-~ 421 (526) .++.+ |..+......-..++|....+.++.+.++.+.+|+..|. .++.+.+.+.+|+.+....+ +.. .... . T Consensus 372 l~~~~~~~~~~~~d~~~i~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~l~~~~d~~~e-~~~~~ee~~~~~~ 450 (485) T protein:vir:24 372 LAYRLMKGGDVPPDMLRMETVWRDPSTPTYAAKADAATKLYGNGQGVIPRERARKDMGYSIAEREE-MRRWDEEEAAMGL 450 (485) T ss_pred HHHHHhcCCCCccccceeeEEecCCCCCCHHHHHHHHHHHHhcccccCCHHHHHhhCCCCHhHHHH-HHHHHHHHhhhhh Confidence 55555 433222222234567777778899999999999998873 48999999999996443211 110 0000 0 Q ss_pred cccc----ccccccccccccccccccccccchHHH Q lcl|Aclame:pro 422 AILS----RQHGQRVAALATIVGPRYGDQQALDKA 452 (526) Q Consensus 422 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (526) .... ...........+......+....-+.+ T Consensus 451 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~a 485 (485) T protein:vir:24 451 GLLGTMVDADPTVPGSPNPTPAPKPQPAIEGGDSA 485 (485) T ss_pred hHHHhhcccCCCCCCCCCCCCCCCCccCCCCCCCC Confidence 0000 000000000000000000000000000 No 162 >protein:vir:98853 Length: 219 # NCBI annotation: hypothetical protein # Family: family:all:196 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654729;genbank:gi:109302914;genbank:GeneID:4156058 Probab=98.47 E-value=1.9e-07 Score=57.38 Aligned_cols=204 Identities=9% Similarity=-0.021 Sum_probs=118.7 Q ss_pred eEecccCCceEEeccC----CCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEE Q lcl|Aclame:pro 161 FQLNPEDQNELRLRDN----SPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRL 236 (526) Q Consensus 161 f~~~~~~~~~l~~~~~----~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~v 236 (526) .+...++...+....+ .+....+++...++++.....+..||.+.+..+......-....++-..|....++|--| T Consensus 1 ~r~~~dg~~~y~~~~~~~~~~g~~~~~~~~eilH~r~~~~~~~~~Glspi~~a~~~i~~~~aa~~~~~~~f~Ng~~p~gi 80 (219) T protein:vir:98 1 MRVCKDGNYKYLMKKSLYDTKSEIYEYNKNDVIFIKLYDPMQQVYGSPDYVGGITSALLNSDATIFRRRYYSNGAHMGFI 80 (219) T ss_pred CceeecCeEEEEEecceecCCceeEEeccccEEEecCCCCCCCcceecHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceE Confidence 1222222222222111 122345677665544433334667899999888877776666666667899999999888 Q ss_pred EecCC-CCCHHHHHHHHHHHHHhhc-C--eEEEe------cCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhh Q lcl|Aclame:pro 237 GKYPP-GTADEEKATLLRAVTGLGH-A--AAGII------PETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLT 306 (526) Q Consensus 237 gk~~~-~~~~~e~~~l~~al~~~~~-~--~~~ii------p~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtlt 306 (526) .+++. ..+++.++++.+.+++... + ..+++ +.|++++-+..+.. -..|.+.-++-..+|+.+...+.-- T Consensus 81 l~~~~~~l~~e~~~~~~~~~~~~~g~~n~~~~~l~~~gg~~~G~~~~~~~~~~~-d~qfle~rk~~~~eIa~~fgVPp~~ 159 (219) T protein:vir:98 81 LYSTDPDMTEEMEDEIAERIRDSKGVGNFRSMFVNIAGGHPDGLKVIPIGDTGQ-KDEFANIKNISAQDVLTSHRFPPGL 159 (219) T ss_pred EEeCCCCCCHHHHHHHHHHHHHhcCcccccceeEecCCCCccceeEEEccCCHH-HHHHHHHHHhhHHHHHHHhCCCHHH Confidence 87764 5788888888888876421 1 12233 24555555543322 2347777888899999998666544 Q ss_pred cccccccchhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHH Q lcl|Aclame:pro 307 STTSQSGGGAFALGQ-VHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADIT 378 (526) Q Consensus 307 t~~~~~~~gS~a~~~-vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~ 378 (526) .+..++++++++..+ ........-+.--+..|+..||+++. ++. -.++.|+.....|+. T Consensus 160 lG~~~~~~~~~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~~~-----~~~--------~~~~~F~~~~~~d~~ 219 (219) T protein:vir:98 160 SGIIPVNTAGLGDPLKIREAYQADEVLPLQEIIAESINSDYE-----IKS--------ALKVNFKQPEKRDKN 219 (219) T ss_pred cccccCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-----CCC--------ccEEeecCcccccCC Confidence 332222233343322 22333445666677777777776421 111 136788877777876 No 163 >protein:vir:78537 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491582;genbank:gi:157786405;genbank:GeneID:5625689 Probab=98.42 E-value=7.2e-07 Score=54.25 Aligned_cols=409 Identities=11% Similarity=0.031 Sum_probs=165.3 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHc------ccCCCHHHHHHHHHHHHhccHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVE------AEQGNLQAQAELFMDMEERDAHL 74 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~------a~~g~~~~~~~l~~~m~~~D~~v 74 (526) |+.-.|.-. .+.+.+..+. -...++.+..+. ....-...+. +........ T Consensus 1 ~~t~~d~i~-----------------~L~~~~~~~~---~r~~~~~~Yy~G~~~i~~~~~~~~~~~~----~~~~~~n~~ 56 (480) T protein:vir:78 1 MTTYHEHVE-----------------RLQGLLARDL---PNLLEAEAYRNGTRRLKTIGIGAPPELA----YLDVQPGWV 56 (480) T ss_pred CCCHHHHHH-----------------HHHHHHHHHH---HHHHHHHHHHhccccchhcccccchhhh----hhhhhcchH Confidence 333222111 1111111110 001111111110 0000000000 000011222 Q ss_pred HHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEee------cCCe Q lcl|Aclame:pro 75 FAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWAL------QGRE 147 (526) Q Consensus 75 ~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~------~~g~ 147 (526) .-++++....+..-.|.+ ++++ . ..+.+.++++.. .|+.....++ ++.-||.| ++++|.- .++. T Consensus 57 ~~ivd~~~~~l~~~g~~~--~~d~-~----~~~~l~~i~~~N-~~~~~~~~~~~~a~~~G~a-y~~v~~~~~~~~d~~~~ 127 (480) T protein:vir:78 57 ATYLRTLSDRLDIEGFRI--SEDS-E----GLEELWNWWQAN-DLDEESVLGHDDSLTFGRA-YITVSHPDVESGDPAGI 127 (480) T ss_pred HHHHHHHHhhhccCceec--CCCc-h----hHHHHHHHHHhc-CHHHHHHHHHHHHhhcCce-EEEeecCccccCCCCCe Confidence 222333333333333332 2221 2 234455666543 4777777765 79999997 4666731 1232 Q ss_pred eEEeeeeeecCcee--Eeccc----------------C------------CceEEeccCCC-------Ccee----ecCC Q lcl|Aclame:pro 148 WMPLAFHHRPQSWF--QLNPE----------------D------------QNELRLRDNSP-------AGEA----LQPF 186 (526) Q Consensus 148 ~~~~~l~~r~~~~f--~~~~~----------------~------------~~~l~~~~~~~-------~g~~----lp~~ 186 (526) ..+. ..+|... .+++. + +....++..+. .+.. ++.- T Consensus 128 ~~i~---~~~p~~~~~i~D~~~~~~~~~~i~~~~~~d~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v 204 (480) T protein:vir:78 128 PLIR---VESPLYMYAELDPRNTRRVTRAVRLYTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVV 204 (480) T ss_pred eEEE---EEcccceEEEEcCCCccceEEEEEEEEeecCCcceEEEEEEeCCeEEEEEecCCCcccccccccccccCCCCc Confidence 2222 2222111 11110 0 00011111111 0111 1112 Q ss_pred CeEEEeecCCCCccccchhHHH-HHHHHHHHHHHHHHHHHHHHHcCCceEEEec--CCCCCHHHHHHHHHHHHHhhcCeE Q lcl|Aclame:pro 187 GWIIHRPRARSGYVARSGLFRV-LAWPYLFRHYATSDLAEMLEIYGLPIRLGKY--PPGTADEEKATLLRAVTGLGHAAA 263 (526) Q Consensus 187 k~i~~~~~~~~g~p~g~gLl~~-~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~--~~~~~~~e~~~l~~al~~~~~~~~ 263 (526) -++.+.++...+.++|.|-+.. +....=-=...+...+..++.|+.|.++.+- .....++....... ...+.. T Consensus 205 Pvv~f~n~~~~~~~~G~sdi~~~i~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~----~~~~~~ 280 (480) T protein:vir:78 205 PVVPLTNDPRLGNRYGRSEISPELRKVTDAASRTLMNLQSASQILGTPLRVISGVTTDELTNDGENTTLD----IYYGRI 280 (480) T ss_pred ceEEeecccccCCccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhCCCccccccccccchhh----hhhhhh Confidence 3455667777888999987654 3222222234566677888999999887652 11111111111111 122222 Q ss_pred EEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcc-cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 264 GIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTST-TSQSGGGAFALGQVHNEVRHDLLASDARQLAATL 342 (526) Q Consensus 264 ~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~-~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~l 342 (526) .. ..|.+.+|.+-...+...|.+.++.+-.+|+..---+....+ .+++ .+|...-.....-....+..-.+.+...| T Consensus 281 ~~-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~fg~~~~n-~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l 358 (480) T protein:vir:78 281 LT-LASEAAKISEFKAAELRNFAEEMEVFRKEAASITGLPPQYLSSSSEN-PASAEAIIATDSRIVKMAERKGRIFGGAW 358 (480) T ss_pred cc-CCCCCceEEecCccCHHHHHHHHHHHHHHHhcccCCCHHHhccccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 23 335567777755555667777777777777654211110000 0000 01221112222333444455556666667 Q ss_pred HHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCC-cCCHHHHHHHhCCCCCCccch--hc---- Q lcl|Aclame:pro 343 SRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGL-EIPSAWVYDKLGIPQPAKNEP--VL---- 415 (526) Q Consensus 343 n~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~-~v~~~~~~e~~Glp~~~~~e~--~~---- 415 (526) . ++++.++.++.........--.+.|....+.++.+.++.+.+|+.+|. .++.+.+++.+|+.+....+- .. T Consensus 359 ~-~~~rl~~~~~~~~~~~~~~~i~v~w~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~lg~~~d~~~e~~~~~~~~~ 437 (480) T protein:vir:78 359 E-RAMRIAMQIMGREVTEEYTRLETVWRDPSTPTVAAKADAVSKLYANGQGPIPKEQARIDLGYTATQREQMRDWDKQET 437 (480) T ss_pred H-HHHHHHHHHcCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHHhcccCCCHHHHHhcCCCCHhHHHHHHHHHHHHH Confidence 5 366666666543221111223566767777888999999999998874 578899999999964322110 00 Q ss_pred ----cc--CCCcccccccccccccccccccccccccccchHHHHHHHHHH Q lcl|Aclame:pro 416 ----RS--AAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALADLPAK 459 (526) Q Consensus 416 ----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (526) .. .+....+.+.+....+.... +.... ...+.....+ T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~ 480 (480) T protein:vir:78 438 EDMIDTLYSTTKAQADATPKPTVTETKT---ETQTS----PSGFNRTKTR 480 (480) T ss_pred HHHHHHhhccccCCCccccCCCCCCCCC---ccCCC----cccCCCcCCC Confidence 00 00000000000000000000 00000 0000000000 No 164 >protein:vir:9306 Length: 511 # NCBI annotation: phi Mu50B-like protein # Family: family:all:125 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803284;genbank:gi:29028594;genbank:GeneID:1258040 Probab=98.40 E-value=8.5e-07 Score=53.88 Aligned_cols=417 Identities=11% Similarity=-0.042 Sum_probs=186.6 Q ss_pred CC------eeecCCCCc---cCccccchhhhhhhhhhhhhhhhhh----hcccCHHHHHHHHHcccCCCHHHHHHHHHHH Q lcl|Aclame:pro 1 MA------QIVDVYGNP---IRTQQLREPQTSRLAGLAKEFAQHP----AKGLTPAKLARILVEAEQGNLQAQAELFMDM 67 (526) Q Consensus 1 m~------~~~~~~g~p---~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m 67 (526) |- +.+|..|+. |+... . ..+ .++ -...++..+..++.........++..+.+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~----------n--~~~-~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy 67 (511) T protein:vir:93 1 MLKVNEFETDTDLRGNINYLFNDEA----------N--VVY-TYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYY 67 (511) T ss_pred Cccccchhhhhhhhhhhhhhhhhhh----------C--Ccc-cccchhhhhhccHHHHHHHHHHHHHhhHHHHHHHHHHh Confidence 11 111111110 00000 0 000 000 1112344444444433322223332222221 Q ss_pred H-----------hc----------cHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHH Q lcl|Aclame:pro 68 E-----------ER----------DAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDA 126 (526) Q Consensus 68 ~-----------~~----------D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~ 126 (526) . .. -+...-.+.....-+.+.+..+...+ ....+.+..++... .|+....++ T Consensus 68 ~g~~~il~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d------~~~~~~l~~~~~~n-~~~~~~~~~ 140 (511) T protein:vir:93 68 EGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDD------KDVLEVIEAFNDLN-DVESHNRSL 140 (511) T ss_pred cccCccccccCcCcccccCcceeecchHHHHHHHHhhhhcccCeeeccCC------hHHHHHHHHHHhhc-CHhHHHHHH Confidence 1 00 13445566666677778887776332 23446677777654 477777776 Q ss_pred H-HhhhhcceeeeEEEeecCCeeEEeeeeeecCcee--EecccC-CceE------------------------------- Q lcl|Aclame:pro 127 L-DGIGHGYSCIELEWALQGREWMPLAFHHRPQSWF--QLNPED-QNEL------------------------------- 171 (526) Q Consensus 127 l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f--~~~~~~-~~~l------------------------------- 171 (526) . ++.-||.+ .+++|...+|...+. ..+|+.. .|+... +..+ T Consensus 141 ~~~~~~~G~a-y~~vy~de~~~~~i~---~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~iyt~~~i~ 216 (511) T protein:vir:93 141 GLDLSIYGKA-YELMIRNQDDETRLY---KSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVY 216 (511) T ss_pred HHHHHhcCee-EEEEEeCCCCceEEE---EEccceeEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEE Confidence 6 68889964 556665445554332 2333221 122111 1100 Q ss_pred EeccCCCCce--------ee-cCCC---eEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEec Q lcl|Aclame:pro 172 RLRDNSPAGE--------AL-QPFG---WIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKY 239 (526) Q Consensus 172 ~~~~~~~~g~--------~l-p~~k---~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~ 239 (526) .+...+..+. .. .+.. ++.| ..++.|.|.+..+....=--...++.++..++.|..|+++.+- T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~-----~nn~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G 291 (511) T protein:vir:93 217 RYLTSRTNGLKLTPRENGFESHSFERMPITEF-----SNNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKG 291 (511) T ss_pred EEEecCCCccccccccccccccCCCccceEEe-----cCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCcceeeec Confidence 0000000000 00 0011 1111 2356789999888766655566788999999999999988774 Q ss_pred CCCCCHHHHHHHHHH-HHHhhc-----CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhccccccc Q lcl|Aclame:pro 240 PPGTADEEKATLLRA-VTGLGH-----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSG 313 (526) Q Consensus 240 ~~~~~~~e~~~l~~a-l~~~~~-----~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~ 313 (526) ..+.+.++.....+. +..+.. ....-...+.+++|++. ..+...++.+++.+.+.|.+.-..+.++.+...++ T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~L~~~I~~~s~~P~~~~~~~~~n 370 (511) T protein:vir:93 292 NLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYK-QYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGT 370 (511) T ss_pred CcccCchhhcccccccceecccccccccccccCCCCcceeEEee-cCCHHHHHHHHHHHHHHHHHHhCCccccccccccc Confidence 333333332221111 000000 01111234677888863 34566789999999999988876666655432222 Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC--CCCCCc-ccceeEEecCccccCHHHHHHHHHHHHh Q lcl|Aclame:pro 314 GGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVL-NR--PGSPDV-RRAPRLVFDLREQADITSMAQSIPALVN 389 (526) Q Consensus 314 ~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~-Nf--~~~~~~-~~~p~~~~~~~e~edl~~~a~~~~~l~~ 389 (526) .+.-|+. ....-....+..-.+.+...|. ++++.++.+ +. ...... ..-.++.|....+.|..+.++.+.+|. T Consensus 371 ~Sg~Al~-~~~~~l~~k~~~k~~~f~~~l~-~~~~li~~~l~~~~~~~~~~d~~~i~~~f~~~~p~n~~e~~~~~~kl~- 447 (511) T protein:vir:93 371 QSGEAMK-YKLFGLEQRTKTKEGLFTKGLR-RRAKLLETILKNTWSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSG- 447 (511) T ss_pred chHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccCcccccccccceEEeCCCCCCCHHHHHHHHHHHh- Confidence 2111211 1111122233334455566664 345555543 22 211111 122477888888999999999999984 Q ss_pred CCCcCCHHHHHHHhCC-CCCCccchhcccCCCcccccc--cccccccccccccccccccccchHHHHHHH Q lcl|Aclame:pro 390 VGLEIPSAWVYDKLGI-PQPAKNEPVLRSAAQPAILSR--QHGQRVAALATIVGPRYGDQQALDKALADL 456 (526) Q Consensus 390 ~G~~v~~~~~~e~~Gl-p~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (526) |+ +|.+.+.+.++. +.+..+-+-+........... ......... .........+...++. . T Consensus 448 -g~-iS~et~~~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~ 511 (511) T protein:vir:93 448 -GK-ISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDI-NDDEQDDDTKDTVDKK---E 511 (511) T ss_pred -cc-CchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhhcccCCCCC-CCCCCCCccccccccc---C Confidence 65 899989898865 222211010100000000000 000000000 0000000000000000 0 No 165 >protein:vir:103951 Length: 511 # NCBI annotation: phage portal protein # Family: family:all:125 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873988;genbank:gi:118430763;genbank:GeneID:4525445 Probab=98.38 E-value=9.5e-07 Score=53.60 Aligned_cols=423 Identities=11% Similarity=-0.045 Sum_probs=186.3 Q ss_pred CCe------eecCCCCc---cCccccchhhhhhhhhhhhhh-hhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHH-- Q lcl|Aclame:pro 1 MAQ------IVDVYGNP---IRTQQLREPQTSRLAGLAKEF-AQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDME-- 68 (526) Q Consensus 1 m~~------~~~~~g~p---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~-- 68 (526) |-+ .+|..|+. |+.+. ...=.| ..-.-...++..+..++.........++..+.+... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~----------n~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~ 70 (511) T protein:vir:10 1 MLKVNEFETDTDLRGNINYLFNDEA----------NVVYTYDGTESDLLQNVNEVSKCIEHHMDYQRPRLKVLSDYYEGK 70 (511) T ss_pred Cccccchhhhhhhhhhhhhhhhhhh----------cCCccCchhhhhcccCHHHHHHHHHHHHHhhHHHHHHHHHHhccc Confidence 111 11111110 00000 000000 000111223444555544333322333333222111 Q ss_pred ----h---------------ccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-H Q lcl|Aclame:pro 69 ----E---------------RDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-D 128 (526) Q Consensus 69 ----~---------------~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-d 128 (526) . ......-.+.....-+.+.+..+...+ +...+.+..++... .|+....++. + T Consensus 71 ~~i~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d------~~~~~~l~~~~~~n-~~~~~~~~~~~~ 143 (511) T protein:vir:10 71 TKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDD------KDVLEAIEAFNDLN-DVESHNRSLGLD 143 (511) T ss_pred CccccccCcccccccCcceeecchHHHHHHHHhhhhcccCceeecCc------hHHHHHHHHHHhhc-CHHHHHHHHHHH Confidence 0 023445556666677778887776432 23446777777654 4777777666 6 Q ss_pred hhhhcceeeeEEEeecCCeeEEeeeeeecCcee--EecccC-Cc-------------------------------eEEec Q lcl|Aclame:pro 129 GIGHGYSCIELEWALQGREWMPLAFHHRPQSWF--QLNPED-QN-------------------------------ELRLR 174 (526) Q Consensus 129 a~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f--~~~~~~-~~-------------------------------~l~~~ 174 (526) +.-||. +.+++|...+|...+. ..+|... .|+... +. ...+. T Consensus 144 ~~i~G~-ay~~vy~dedg~~~i~---~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~d~~~~~~~~~~~iyt~~~i~~~~ 219 (511) T protein:vir:10 144 LSIYGK-AYEIMIRNQDDETRLY---KSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYL 219 (511) T ss_pred HHhcCe-eEEEEEeCCCCceEEE---EEccceeEEEEcCCCCCceEEEEEEEEeeecccCccceEEEEEEEeCCcEEEEE Confidence 888997 4577776555554433 2222211 111111 00 00000 Q ss_pred cCCCCcee---------ecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH Q lcl|Aclame:pro 175 DNSPAGEA---------LQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTAD 245 (526) Q Consensus 175 ~~~~~g~~---------lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~ 245 (526) ..+..+.. -.++..+-..+- ..+..|.|.+..+....=--...++.++..++.|+.|+++.+-....+. T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~vPvv~f--~nn~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~ 297 (511) T protein:vir:10 220 TSRTNGLKLTPRENGFESHSFERMPITEF--SNNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDP 297 (511) T ss_pred ecCCCcccccccccccccccCcceeEEEe--cCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeeccccCCc Confidence 00000000 001111111111 2356789999988766666667788899999999999998775333333 Q ss_pred HHHHHHHH-HHHHhhc----C-eEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhh Q lcl|Aclame:pro 246 EEKATLLR-AVTGLGH----A-AAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFAL 319 (526) Q Consensus 246 ~e~~~l~~-al~~~~~----~-~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~ 319 (526) ++.....+ .+..+.. . ...-...+.+++|++. ......++..++.+.+.|...-..+.++.+...++.+.-|+ T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~-~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~~n~Sg~Al 376 (511) T protein:vir:10 298 VEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYK-QYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAM 376 (511) T ss_pred hhhccchhccceecccccccccccccCCCCcceeEEee-cCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHH Confidence 33222111 0011110 0 1111234567888863 34556788999999999988765555554322222211121 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--CCCCC-CcccceeEEecCccccCHHHHHHHHHHHHhCCCcCC Q lcl|Aclame:pro 320 GQVHNEVRHDLLASDARQLAATLSRDLLWPLLVL-N--RPGSP-DVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIP 395 (526) Q Consensus 320 ~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~-N--f~~~~-~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~ 395 (526) . ....-....+..-.+.+...|.+ +++.++.+ + ..... ....-..+.|....+.|..+.++.+.+|+ |+ +| T Consensus 377 ~-~~~~~l~~k~~~k~~~f~~~l~~-~~~li~~~~~~~~~~~~~~d~~~i~i~f~~~~p~d~~~~~~~~~kl~--G~-iS 451 (511) T protein:vir:10 377 K-YKLFGLEQRTKTKEGLFTKGLRR-RAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSG--GK-IS 451 (511) T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCcccccccceeeEEeCCCCCcCHHHHHHHHHHHh--cc-Cc Confidence 1 11111222333344555556643 44444443 1 11111 11123567888888999999999999985 66 89 Q ss_pred HHHHHHHhCC-CCCCccchhcccCCCcc--cccccccccccccccccccccccccchHHHHHHH Q lcl|Aclame:pro 396 SAWVYDKLGI-PQPAKNEPVLRSAAQPA--ILSRQHGQRVAALATIVGPRYGDQQALDKALADL 456 (526) Q Consensus 396 ~~~~~e~~Gl-p~~~~~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (526) .+.+.+.++. +.+..+-+-+....... ..................... .+...++. . T Consensus 452 ~et~~~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~ 511 (511) T protein:vir:10 452 QTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDD-TKDTVDKK---E 511 (511) T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCc-ccCccccc---C Confidence 9989898864 32221100000000000 000000000000000000000 00000000 0 No 166 >protein:vir:105782 Length: 449 # NCBI annotation: gp5 # Family: family:all:6783 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224143;genbank:gi:62362218;genbank:GeneID:3342535 Probab=98.36 E-value=1.1e-06 Score=53.27 Aligned_cols=399 Identities=11% Similarity=0.057 Sum_probs=172.2 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |++-+.-..+ ..+. ..+++..|.-+ ..++.|+...| ..+..+.+-+....+.+|+ .|.+++.-...++++ T Consensus 1 ~~~~~~~~~~----~~~~---~~~~~~~rd~l-~~~~~glg~~r-~~~~~~~g~~~~~~~~~l~-~~Yr~~~ia~~iVd~ 70 (449) T protein:vir:10 1 MTDKLTLAVN----HALN---DARMARARMGL-MVPTMGLDNKR-HSAWCEYGFPELVTYENLY-SLYRRGGIAHGAVEK 70 (449) T ss_pred CchhhHHHHh----hhcc---hhHHHHHHHHH-HHHHhcCCccc-chhhhhcCCcccCCHHHHH-HHHhcCchhHHHHHh Confidence 7753221100 0011 11222233333 23455555455 3344444443333333443 344467777788887 Q ss_pred HHHHHhcCCceEecCCCCCHHHH--HHHHHHHHHHhcCcCHHHHHHHHHHhhhhcceeeeEEEeecCCee--------EE Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEK--ADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREW--------MP 150 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~--~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~--------~~ 150 (526) --..+...-..|..+.+.+..+. .....+++.+.. .-|..+....-.+.+||++++=+.- .++..| .+ T Consensus 71 ~~d~~~~~~~~i~~g~~~~~~~~~~~~e~~~~~l~~~-~~~~~l~ea~~~~rl~Gga~i~i~v-~d~~~l~~Pl~~~~~i 148 (449) T protein:vir:10 71 LVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTN-RLWRSFAEADRRRLVGRYAGILLHI-RDEKDWNLPATKGRGL 148 (449) T ss_pred hhhhhhhcCcccccCccccchhhhHHHHHHHHHHHHH-HHHHHHHHHHHhhhccCcEEEEEEe-cCCCCCCcccccCcce Confidence 65555333233443332222111 111122222211 1144444444467789999874432 122111 12 Q ss_pred eeeeeecCceeE-----ecc---cCCce--EEecc----CCCCceeecCCCeEEEeecCCCCccccchhHHHHHHHHH-H Q lcl|Aclame:pro 151 LAFHHRPQSWFQ-----LNP---EDQNE--LRLRD----NSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYL-F 215 (526) Q Consensus 151 ~~l~~r~~~~f~-----~~~---~~~~~--l~~~~----~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~-f 215 (526) +.|.+.....+. -++ +-+.. +..+. .+..+..+.+.+++.+... -..|.++++.+|-..+ + T Consensus 149 ~~i~v~~~~~i~~~~~~~dp~sp~yg~P~~y~v~~~~~g~~~~~~~iH~SRl~~~~~~----~~~g~~~L~~~yn~l~~~ 224 (449) T protein:vir:10 149 QKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSL 224 (449) T ss_pred eeEEeeccccCChhhhhcCCCCCCCCCceEEEEeeeccCCCccceeeccceeEeecCC----CCCChhHHHHHHHHhhhH Confidence 223322211111 011 00110 11111 1112233455554443221 1227889999885321 1 Q ss_pred HH-----------HHHHHHH-HHHHHc---CCceEEEecCCCCCHHHHHHHHHHHHHhhc-CeEEEecCCceEEEeecCC Q lcl|Aclame:pro 216 RH-----------YATSDLA-EMLEIY---GLPIRLGKYPPGTADEEKATLLRAVTGLGH-AAAGIIPETMAIDFQQAAQ 279 (526) Q Consensus 216 K~-----------~~~~~w~-~f~E~~---G~P~~vgk~~~~~~~~e~~~l~~al~~~~~-~~~~iip~~~~ie~~~a~~ 279 (526) -+ ...+... .|..+. ++.-.+ . ...++-.+.+.+.++.+.+ ...+++-++.+++.++.+- T Consensus 225 ~~~~~~~a~~~l~~~~rq~~~~~~~~~~~~~l~~~~---~-~~~e~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~ 300 (449) T protein:vir:10 225 EKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLY---G-VSIDELQDKFNEVAGEINRGNDVLMTTQGATVTPLVTSV 300 (449) T ss_pred HHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhHHh---h-CCchHHHHHHHHHHHHHhccchheeecCCcceEEEeccc Confidence 00 0000001 111111 112111 1 1223333444444544422 2345667777888887653 Q ss_pred CChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC Q lcl|Aclame:pro 280 GSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSP 359 (526) Q Consensus 280 ~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~ 359 (526) ++.. .+++..-.++|-+. |-.+|.--|...+|-.|.++ ...+.+.+.+-...+...|. .|+..|+...++..+ T Consensus 301 sgl~---d~l~~~~q~iaaa~-~IP~t~L~Gqsp~glnst~D--~~nyyd~i~~~Q~~l~p~le-~l~~~l~~s~~g~~~ 373 (449) T protein:vir:10 301 ADPT---ATYNVNLQTAAAGV-DIPTRILIGNQQAERSSTED--QKYFNARCQSRRVDLSFEIE-DFCDKLIELKIIDAV 373 (449) T ss_pred CChh---HHHHHHHHHHHHHh-CCCeeeeeccCccccccchh--HHHHHHHHHHHHHhhhHHHH-HHHHHHHHhhcCCCC Confidence 3332 23333334455554 33333222222223333333 45577888887777777785 488888888776442 Q ss_pred CcccceeEEecCccccCHHH-------HHHHHHHHHhCCC--cCCHHHHHHHhCCCCCCccchhcccCCCcccccccccc Q lcl|Aclame:pro 360 DVRRAPRLVFDLREQADITS-------MAQSIPALVNVGL--EIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQ 430 (526) Q Consensus 360 ~~~~~p~~~~~~~e~edl~~-------~a~~~~~l~~~G~--~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~ 430 (526) ++ -.|+|..-...+-++ .|++++++++.|. .++.+++|+.+|.+.+.... ..... .++...+. T Consensus 374 -~d--~~i~f~pL~~~t~kEkAei~k~~A~a~~~~~~ag~~~~~~~~EiR~~~~~~~~~~~~-~~~e~----~de~~~~~ 445 (449) T protein:vir:10 374 -AK--KAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEP-LGEED----GDEEDKAT 445 (449) T ss_pred -Cc--eeEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHccccCCcCHHHHHHHhcccCCCCCC-CCCCC----CccccccC Confidence 22 345665544444343 4667778887763 47999999999997654321 11110 11111111 Q ss_pred cccc Q lcl|Aclame:pro 431 RVAA 434 (526) Q Consensus 431 ~~~~ 434 (526) ..++ T Consensus 446 d~~a 449 (449) T protein:vir:10 446 DSAA 449 (449) T ss_pred CcCC Confidence 1111 No 167 >protein:vir:97171 Length: 512 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239722;genbank:gi:66394876;genbank:GeneID:5130904 Probab=98.34 E-value=1.2e-06 Score=53.08 Aligned_cols=432 Identities=11% Similarity=-0.047 Sum_probs=180.4 Q ss_pred CCeeecC--CCC-----ccCccc----------cchhhhhhhhhhhhhhhhhhhccc-CHHHHHHHHHcccCCCHHHHHH Q lcl|Aclame:pro 1 MAQIVDV--YGN-----PIRTQQ----------LREPQTSRLAGLAKEFAQHPAKGL-TPAKLARILVEAEQGNLQAQAE 62 (526) Q Consensus 1 m~~~~~~--~g~-----p~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~l~~a~~g~~~~~~~ 62 (526) |-++-.= .|. -+.+.. +.+......-.+.+-+..|-.... ...++.+.... ....+..... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~YY~g-~~~i~~~~~~ 79 (512) T protein:vir:97 1 MLKANEFETDTDLRENRNYLFNDEANVVYTYDGTESDLLQNINEVSKYIEHHMDYQRPRLKVLSDYYEG-KTKNLVELTR 79 (512) T ss_pred CccceeccCceeeeeCceeeeccccccccccCchhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcc-cCccccccCc Confidence 4332210 011 010100 000000000011111111110000 01111111110 0000000000 Q ss_pred HHHHH----HhccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-Hhhhhcceee Q lcl|Aclame:pro 63 LFMDM----EERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCI 137 (526) Q Consensus 63 l~~~m----~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~ 137 (526) .-+.. .-......-.+.....-+.+.+..+...+ ....+.+.+++... .|+....++. ++.-||.+ . T Consensus 80 ~~~~~~~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~~~d------~~~~~~l~~~~~~n-~~~~~~~~~~~~~~i~G~a-y 151 (512) T protein:vir:97 80 RKEEYMADNRVAHDYASYISDFINGYFLGNPIQCQDDD------KDVLEAIEAFNDLN-DVESHNRSLGLDLSIYGKA-Y 151 (512) T ss_pred ccccccCcceeecchHHHHHHHHhhhhcccCceeccCC------hHHHHHHHHHHhhc-CHHHHHHHHHHHHHhcCeE-E Confidence 00000 00123334455566666778887776432 22445677777654 4777777666 68889975 5 Q ss_pred eEEEeecCCeeEEeeeeeecCcee--EecccCC-c-------------------------------eEEeccCCCCcee- Q lcl|Aclame:pro 138 ELEWALQGREWMPLAFHHRPQSWF--QLNPEDQ-N-------------------------------ELRLRDNSPAGEA- 182 (526) Q Consensus 138 Ei~w~~~~g~~~~~~l~~r~~~~f--~~~~~~~-~-------------------------------~l~~~~~~~~g~~- 182 (526) +++|...+|.+.+. ..+|+.. .|+.... . ...+...+..+.. T Consensus 152 ~~vy~ded~~~~i~---~~~p~~~~~iyd~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~ 228 (512) T protein:vir:97 152 ELMIRNQDDETRLY---KSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKL 228 (512) T ss_pred EEEEeCCCCceEEE---EEcccceEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccc Confidence 66675445554433 2222211 1111110 0 0011111100000 Q ss_pred --------ecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHH Q lcl|Aclame:pro 183 --------LQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRA 254 (526) Q Consensus 183 --------lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~a 254 (526) -.+++.+-..+ -..++.|.|.+..+....=--...++.++..++.|..|+++.+-..+.+.++....... T Consensus 229 ~~~~~~~~~~~~g~vPvv~--~~nn~~~~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~ 306 (512) T protein:vir:97 229 TPRENGFESHSFERMPITE--FSNNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEA 306 (512) T ss_pred cccccccccccCcccceEe--ecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecCccCCchhhhhhhhc Confidence 00111111111 02357789999887766666666788899999999999998764333333332221111 Q ss_pred -HH------HhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHH Q lcl|Aclame:pro 255 -VT------GLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVR 327 (526) Q Consensus 255 -l~------~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~ 327 (526) +. ........-...+.++++++. ......++.+++.+.+.|.+.-..+.++.+...|+.+.-|+ .....-. T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~-~~~~~~~e~~~~~L~~~I~~~s~~p~~~~~~~~gn~Sg~Al-~~~~~~l 384 (512) T protein:vir:97 307 NVLFLEPTVYENRDTGIETEGSVDGGYIYK-QYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAM-KYKLFGL 384 (512) T ss_pred ccccccccchhhcccccCCCCCcceEEEee-cCCHHHHHHHHHHHHHHHHHHhCCcccCcccccccchHHHH-HHHHHHH Confidence 00 011111112245677888864 34556788999999999988766655554332221111121 1111222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cC-CC-CCCc-ccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHh Q lcl|Aclame:pro 328 HDLLASDARQLAATLSRDLLWPLLVL-NR-PG-SPDV-RRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKL 403 (526) Q Consensus 328 ~~~~~ad~~~i~~~ln~~li~~l~~~-Nf-~~-~~~~-~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~ 403 (526) ...+..-.+.+...|++ +++.++.+ +. +. .... -.-..+.|...-+.|..+.++.+.+|+ |+ +|.+.+.+.+ T Consensus 385 ~~ka~~k~~~f~~~l~~-~~~li~~~~~~~~~~~~~~d~~~i~~~f~~~~p~~~~e~~~~~~kl~--gi-iS~et~~~~l 460 (512) T protein:vir:97 385 EQRTKTKEGLFTKGLRR-RAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSG--GK-ISQTTLMSLF 460 (512) T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCcccccccccceEEeCCCCCcCHHHHHHHHHHHh--cc-CchHHHHHhC Confidence 23344444555666643 55555443 21 11 1111 112467888888999999999999985 76 8999998998 Q ss_pred CC-CCCCccchhcccCCCcc--cccccccccccccccccccccccccchHHHHHHH Q lcl|Aclame:pro 404 GI-PQPAKNEPVLRSAAQPA--ILSRQHGQRVAALATIVGPRYGDQQALDKALADL 456 (526) Q Consensus 404 Gl-p~~~~~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (526) +. +.|..+-+-+....... ..................+ ...+...++. . T Consensus 461 ~~v~d~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~ 512 (512) T protein:vir:97 461 SFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQD-DDTKDTVDKK---E 512 (512) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCC-CCcccccccc---C Confidence 75 32221100000000000 0000000000000000000 0000000000 0 No 168 >protein:vir:99781 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004303;genbank:gi:122891757;genbank:GeneID:4712336 Probab=98.33 E-value=1.3e-06 Score=52.87 Aligned_cols=422 Identities=11% Similarity=-0.043 Sum_probs=187.1 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhh----hcccCHHHHHHHHHcccCCCHHHHHHHHHHHH-------h Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHP----AKGLTPAKLARILVEAEQGNLQAQAELFMDME-------E 69 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~-------~ 69 (526) .-..+|..|+. +.. .... +. ..+ .++ -...++..+..++.........++..+++... . T Consensus 7 ~~~~~~~~~~~-~~~-~~~~-----~n--~~~-~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~i~~~ 76 (511) T protein:vir:99 7 FETDTDLRGNI-NYL-FNDE-----AN--VVY-TYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVE 76 (511) T ss_pred hhhhhhhhhhh-hhh-hhhh-----hC--Ccc-ccchhhhhhhccHHHHHHHHHHHHHhhHHHHHHHHHHhcccCccccc Confidence 11112222221 000 0000 00 000 011 11223444444444333222222222222111 0 Q ss_pred --------------ccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-Hhhhhcc Q lcl|Aclame:pro 70 --------------RDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGY 134 (526) Q Consensus 70 --------------~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~ 134 (526) -.....-.+.+...-+.+.+..+...+ +...+++..+++.. .|+.....+. ++.-||. T Consensus 77 ~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d------~~~~~~l~~~~~~n-~~~~~~~~~~~~~~i~G~ 149 (511) T protein:vir:99 77 LTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDD------KDVLEAIEAFNDLN-DVESHNRSLGLDLSIYGK 149 (511) T ss_pred cCcccccccCcceeecchHHHHHHHHHhhhcccCceeecCc------hHHHHHHHHHHhhc-CHhHHHHHHHHHHHhcCe Confidence 013334556666667778887776432 23456777777654 4777777666 6888996 Q ss_pred eeeeEEEeecCCeeEEeeeeeecCcee--EecccC-Cc-------------------------------eEEeccCCCCc Q lcl|Aclame:pro 135 SCIELEWALQGREWMPLAFHHRPQSWF--QLNPED-QN-------------------------------ELRLRDNSPAG 180 (526) Q Consensus 135 s~~Ei~w~~~~g~~~~~~l~~r~~~~f--~~~~~~-~~-------------------------------~l~~~~~~~~g 180 (526) + .+++|...+|...+. ..+|+.. .|+... +. ...+...+..+ T Consensus 150 a-~~~vy~ded~~~~i~---~~~p~~~~~vyd~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~ 225 (511) T protein:vir:99 150 A-YELMIRNQDDETRLY---KSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNG 225 (511) T ss_pred e-EEEEEeCCCCceEEE---EEccceeEEEEcCCCCCceEEEEEEEEeeecccCccceEEEEEEEeCCcEEEEEecCCcc Confidence 4 567775445544332 2222211 111111 00 00011000000 Q ss_pred e---------eecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHH Q lcl|Aclame:pro 181 E---------ALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATL 251 (526) Q Consensus 181 ~---------~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l 251 (526) . .-.++..+-..+- ..|+.|.|.+..+....=--...+..++..++.|+.|+++.+-..+.+..+.... T Consensus 226 ~~~~~~~~~~~~~~~g~vPvv~~--~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~ 303 (511) T protein:vir:99 226 LKLTPRENGFESHSFERMPITEF--SNNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQ 303 (511) T ss_pred ccccccccccccCCCCccceEEe--cCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccCchhhccc Confidence 0 0001111111111 2367899999887666666677788899999999999888764333333332221 Q ss_pred HH-H---HHHh--hcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHH Q lcl|Aclame:pro 252 LR-A---VTGL--GHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNE 325 (526) Q Consensus 252 ~~-a---l~~~--~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~ 325 (526) .+ . +... ......-...+.+++|++. ..+...++..++.+.+.|.+.-..+.++.+...|..+.-|+ ..... T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~-~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~gn~Sg~Al-k~~~~ 381 (511) T protein:vir:99 304 KEANVLFLEPTVYADSEGRETEGSVDGGYIYK-QYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAM-KYKLF 381 (511) T ss_pred ccccceecccccccccccccCCCCcceeEEee-cCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHH-HHHHH Confidence 11 0 0010 1111122244678888874 34566789999999999988766666554332222111121 11122 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCCCc-ccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHH Q lcl|Aclame:pro 326 VRHDLLASDARQLAATLSRDLLWPLLVL---NRPGSPDV-RRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYD 401 (526) Q Consensus 326 v~~~~~~ad~~~i~~~ln~~li~~l~~~---Nf~~~~~~-~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e 401 (526) -....+..-.+.+...|++ +++.++.+ +....... -.-..+.|....+.|..+.++.+.+++ |+ +|.+.+.+ T Consensus 382 ~l~~ka~~k~~~~~~~l~~-~~~li~~~~~~~~~~~~~~~~~~i~i~f~~~~p~n~~e~~~~~~kl~--Gi-iS~et~l~ 457 (511) T protein:vir:99 382 GLEQRTKTKEGLFTKGLRR-RAKLLETILKNTRSIDVSKDFNTVRYVYNRNLPKSLIEELKAYIDSG--GK-ISQTTLMS 457 (511) T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCcccccccccceEEeCCCCCcCHHHHHHHHHHHh--cc-CCHHHHHH Confidence 2223333444556666643 55554443 22211111 112477888888999999999999985 66 89998888 Q ss_pred HhCC-CCCCccchhcccCCC---cccccccccccccccccccccccccccchHHHH Q lcl|Aclame:pro 402 KLGI-PQPAKNEPVLRSAAQ---PAILSRQHGQRVAALATIVGPRYGDQQALDKAL 453 (526) Q Consensus 402 ~~Gl-p~~~~~e~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (526) .++. +.++.+-+-+..... +...... ............+... ....++.- T Consensus 458 ~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~d~~e 511 (511) T protein:vir:99 458 LFSFFQDPELEVKKIEEDEKESIKKAQKNM-YQDPRNINDDEQDDST-KDSIDKKE 511 (511) T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHHhhcc-cccCCCCCCCCCCCCC-cCcccccC Confidence 8854 222211000000000 0000000 0000000000000000 00000000 No 169 >protein:vir:2341 Length: 488 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075278;genbank:gi:12657865;genbank:GeneID:920078 Probab=98.32 E-value=1.4e-06 Score=52.68 Aligned_cols=425 Identities=10% Similarity=0.007 Sum_probs=170.3 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHH-HHHHHHH---HhccHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQ-AELFMDM---EERDAHLFA 76 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~-~~l~~~m---~~~D~~v~s 76 (526) |+. . ..++.. .-+..+.+.+..+..+..+..++. .. .+ ++... ..+-+++ .-......- T Consensus 1 ~~~---~--~~~d~~-------~~i~~L~~~~~~~~~r~~~~~~Yy---~g-~~-~i~~~~~~~~~~~~~~~~~~n~~~~ 63 (488) T protein:vir:23 1 MAE---T--ESIDPE-------KLRDQLLDAFENKQNELKSSKAYY---DA-ER-RPDAIGLAVPLDMRKYLAHVGYPRT 63 (488) T ss_pred CCc---c--cCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHH---hc-cc-chhhcCcccchhhhhhhhhcchHHH Confidence 221 0 001111 111122222222211111111111 10 00 01000 0000010 001112222 Q ss_pred HHHHHHHHHhcCCceEecCC---CCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeec-------- Q lcl|Aclame:pro 77 EMSKRKRAILGLDWAVEPPR---NASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQ-------- 144 (526) Q Consensus 77 ~l~~Rk~av~~~~w~v~~~~---~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~-------- 144 (526) ++++....+.--.|.+-.+. -....+....+.+.+++... .|+.....+. +++-||.| ++++|... T Consensus 64 ivd~~a~~l~~~Gf~~~~~~~~~~~~~~d~~~~~~l~~i~~~N-~~~~~~~~~~~~a~i~G~a-~~~v~~~~~~~~~~~~ 141 (488) T protein:vir:23 64 YVDAIAERQELEGFRIPSANGEEPESGGENDPASELWDWWQAN-NLDIEATLGHTDALIYGTA-YITISMPDPEVDFDVD 141 (488) T ss_pred HHHHHHHhhhccceeccCCcccccccccchhHHHHHHHHHHhc-ChhHHHHHHHHHHhhcCce-EEEEecCCcccccCCC Confidence 22222211111122221110 01122334456677777654 4777776655 68889987 44555321 Q ss_pred CCeeEEeeeeeecCceeE--ec---------------ccCCc-----------eEEeccCCCCc-------eeecCCCeE Q lcl|Aclame:pro 145 GREWMPLAFHHRPQSWFQ--LN---------------PEDQN-----------ELRLRDNSPAG-------EALQPFGWI 189 (526) Q Consensus 145 ~g~~~~~~l~~r~~~~f~--~~---------------~~~~~-----------~l~~~~~~~~g-------~~lp~~k~i 189 (526) .+..+ +...+|+... ++ .+++. ...+...++.. ..+..--++ T Consensus 142 ~~~~~---i~~~~p~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv 218 (488) T protein:vir:23 142 PEVPL---IRVEPPTALYAEVDPRTRKVLYAIRAIYGADGNEIVSATLYLPDTTMTWLRAEGEWEAPTSTPHGLEMVPVI 218 (488) T ss_pred CCcce---EEEeccceeEEEEecCCCceEEEEEEEEecCCCcEEEEEEEecCcEEEEEecCCceEeccccccCCCCcceE Confidence 11111 1111111100 00 01000 00111111110 112222246 Q ss_pred EEeecCCCCccccchhHHHHHHHHH-HHHHHHHHHHHHHHHcCCceEEEec--CCCCC--HHHHHHHHHHHHHhhcCeEE Q lcl|Aclame:pro 190 IHRPRARSGYVARSGLFRVLAWPYL-FRHYATSDLAEMLEIYGLPIRLGKY--PPGTA--DEEKATLLRAVTGLGHAAAG 264 (526) Q Consensus 190 ~~~~~~~~g~p~g~gLl~~~~~~~~-fK~~~~~~w~~f~E~~G~P~~vgk~--~~~~~--~~e~~~l~~al~~~~~~~~~ 264 (526) .++++...+.++|.|-+........ -=...+..++...+-|+.|.++.+- +.... ++.... +-.++.+... T Consensus 219 ~f~n~~~~~~~~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~----~~~~~~~~v~ 294 (488) T protein:vir:23 219 PISNRTRLSDLYGTSEISPELRSVTDAAAQILMNMQGTANLMAIPQRLIFGAKPEELGINAETGQR----MFDAYMARIL 294 (488) T ss_pred EeccccccCCcCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCCCcccccccccccch----hhhhhhhhhc Confidence 6677777888899987654322222 2345566777888889999877552 11111 111111 2333556677 Q ss_pred EecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcc-cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 265 IIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTST-TSQSGGGAFALGQVHNEVRHDLLASDARQLAATLS 343 (526) Q Consensus 265 iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~-~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln 343 (526) ++++|.+.++.+-...+...|...++-+-.+|+...--+.-... ..++..+.-|+ .....-.......-.+.+...|. T Consensus 295 ~~~~g~~~~~~q~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~n~~Sg~Al-~~~~~~l~~k~~~~~~~f~~~l~ 373 (488) T protein:vir:23 295 AFEGGEGAHAEQFSAAELRNFVDALDALDRKAASYSGLPPQYLSSSSDNPASAEAI-KAAESRLVKKVERKNKIFGGAWE 373 (488) T ss_pred cCCCCCCceeEecCCCChHHHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHH Confidence 78888888888755555666777777666777654321111100 01111111222 22222233344445555666674 Q ss_pred HHHHHHHHHhcCCCCCC-cccceeEEecCccccCHHHHHHHHHHHHhCCC-cCCHHHHHHHhCCCCCCccc--hhcccCC Q lcl|Aclame:pro 344 RDLLWPLLVLNRPGSPD-VRRAPRLVFDLREQADITSMAQSIPALVNVGL-EIPSAWVYDKLGIPQPAKNE--PVLRSAA 419 (526) Q Consensus 344 ~~li~~l~~~Nf~~~~~-~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~-~v~~~~~~e~~Glp~~~~~e--~~~~~~~ 419 (526) ++++.++.+.-+.... ...--.++|....+.++.+.++.+.||+..|. .++.+.+.+.+|+-.....+ ....... T Consensus 374 -~~~~l~~~~~~~~~~~~~~~~i~v~f~~~~~~s~~~~ada~~kl~~~g~~~~s~et~~~~l~~~~d~~~~~~~~~~~~~ 452 (488) T protein:vir:23 374 -QAMRLAYKMVKGGDIPTEYYRMETVWRDPSTPTYAAKADAAAKLFANGAGLIPRERGWVDMGYTIVEREQMRQWLEQDQ 452 (488) T ss_pred -HHHHHHHHHhcCCCcchhhccceEEecCCCCCCHHHHHHHHHHHHhcccccCCHHHHHHhCCCCchHHHHHHHHHHHHH Confidence 4666665553222111 11223567777778899999999999999874 48999999999874332111 0000000 Q ss_pred Cc--ccccccccccccccccccccccccccchHHHH Q lcl|Aclame:pro 420 QP--AILSRQHGQRVAALATIVGPRYGDQQALDKAL 453 (526) Q Consensus 420 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (526) .. ....+..............+.....+..++.+ T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~a 488 (488) T protein:vir:23 453 KQGLGLIGSLYGASTPEGKPGEAPVGEPPAPEPDAA 488 (488) T ss_pred HHHHHHHHHHhccCCCcccCCCCCCCCCCCCCCCCC Confidence 00 00000000000000000000000000000000 No 170 >protein:vir:96179 Length: 468 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240075;genbank:gi:66395736;genbank:GeneID:5133166 Probab=98.31 E-value=1.4e-06 Score=52.61 Aligned_cols=403 Identities=10% Similarity=-0.004 Sum_probs=180.7 Q ss_pred CCeeecCCCCccCccccchh-----hhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCH---HHHHHHHH------- Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREP-----QTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNL---QAQAELFM------- 65 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~---~~~~~l~~------- 65 (526) |..|.=...+++=.+..+.+ .+.+ .+.+-+..|-.+ ..++.. ++.--.|.. ........ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~i~~~~~~---~~~~~~-~~~yY~g~~~i~~~~~~~~~~~~~~~~ 74 (468) T protein:vir:96 1 MIDIFWPNEKPYHERVVEQIKPQYETQEE--MILRLITKHKEN---VEDITV-GERYYNHQPDVLFNAPKRNVKGEIDPF 74 (468) T ss_pred CccccCCcCceeehheeecccccccCcHH--HHHHHHHHHHHH---HHHHHH-HHHHhcCCCcccccccccccccccccc Confidence 88764444443321221111 1111 111111111100 111111 111111210 00000000 Q ss_pred --HHHhccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEe Q lcl|Aclame:pro 66 --DMEERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWA 142 (526) Q Consensus 66 --~m~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~ 142 (526) .-....+...-.+.+...-+.+.+..+...+ +...+.+.+++.+ +|.+.+.++. ++.-||.++ +++|. T Consensus 75 ~~~~ki~~n~~~~Iv~~~~~~l~g~p~~~~~~d------~~~~~~l~~~~~n--~~~~~~~~~~~~~~~~G~~~-~~v~~ 145 (468) T protein:vir:96 75 KPDWRMYTNYHQNLVDQKVAYAVANPVTYGTED------EKSLKTIQEVLNH--KWDDKLVDILTAASNKGVEW-IQPYV 145 (468) T ss_pred ccccccccchHHHHHHHHHhhhccCCceeccCC------hHHHHHHHHHHhc--CHHHHHHHHHHHHhhcCeEE-EEEEE Confidence 0000145555566666677778777775321 2345566777753 4666666554 688899975 45565 Q ss_pred ecCCeeEEeeeeeecCce-e-Eeccc-CCce---EEe-ccCCCCceee-------------------------------- Q lcl|Aclame:pro 143 LQGREWMPLAFHHRPQSW-F-QLNPE-DQNE---LRL-RDNSPAGEAL-------------------------------- 183 (526) Q Consensus 143 ~~~g~~~~~~l~~r~~~~-f-~~~~~-~~~~---l~~-~~~~~~g~~l-------------------------------- 183 (526) ..+|.+.+. ..+|.. | .|+.. .+.. +++ ...+.....+ T Consensus 146 d~~~~~~i~---~~~p~~~~~v~~~~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (468) T protein:vir:96 146 DEQGEFKTF---RVPAEQAIPIWTNKERDELKAFIRLYELDGGERVEYWTANDVTFYELKDGQLIPDYYQGEEHVQAHYY 222 (468) T ss_pred cCCCceEEE---EEcccceEEEEcCCCCCceEEEEEEEEecCceEEEEEeCCeEEEEEEcCCceeeccccccccccccee Confidence 445544332 222221 1 11111 0000 000 0000000000 Q ss_pred -----cCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHh Q lcl|Aclame:pro 184 -----QPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGL 258 (526) Q Consensus 184 -----p~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~ 258 (526) .+++.+-+.+- ..++.|.|.+..+....=--...+..++..++.+..|+++.+--.+...+ .....+ T Consensus 223 ~~~~~~~~~~iPvv~~--~n~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~~------~~~~~~ 294 (468) T protein:vir:96 223 VGNKSMSWNRVPFIPF--KNNPQEVSDLFMYKTIIDAMDKRLSDTQNTFDEATELIYVLKGYEGEDLE------EFMYNL 294 (468) T ss_pred eccccccCCcccEEEe--cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCccccc------hhhhhh Confidence 11111111110 24778999988866555555667888999999999999988743222111 122233 Q ss_pred hcCeEEEecC--CceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 259 GHAAAGIIPE--TMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDAR 336 (526) Q Consensus 259 ~~~~~~iip~--~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~ 336 (526) ....++.++. +.+++++.. ......++..++.+.+.|...-.+..++.+.. ++..|...-+....-....+..-.+ T Consensus 295 ~~~~~i~~~~d~~~~~~~l~~-~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~-~~n~Sg~Alk~~~~~l~~k~~~k~~ 372 (468) T protein:vir:96 295 KYYKAINVDGDGSGGVDTIQI-DVPVQSAKEYLDMLRDYVIEFGQGVDFQQDKF-GNSPSGIALKFMYSNLDLKANKLKN 372 (468) T ss_pred hcCceEEecCCCCCcceEEee-cCChHHHHHHHHHHHHHHHHHhCccccccccc-ccchHHHHHHHHHHHHHHHHHHHHH Confidence 4445555653 356888874 34556788999999999988865555543321 1111111101111112223344445 Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCC-CCCCccchhc Q lcl|Aclame:pro 337 QLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGI-PQPAKNEPVL 415 (526) Q Consensus 337 ~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Gl-p~~~~~e~~~ 415 (526) .+...+. ++++.++.+..... . .....+.|....+.|..+.++.+ +..|+ +|.+.+.+.++. ..|. +++. T Consensus 373 ~~~~~l~-~~~~li~~~~g~~~-d-~~~i~i~f~~~~p~d~~e~a~~~---~~~g~-iS~et~i~~l~~v~D~~--~E~~ 443 (468) T protein:vir:96 373 KTLTALQ-ELLQYIIDFYKLSI-K-VQDVEITFNFNVMVNELEQSQIG---VNSQY-LSKETVVTNHPWVDDPV--AEME 443 (468) T ss_pred HHHHHHH-HHHHHHHHHhCCCc-c-cceeeEEecCCCCcCHHHHHHHH---HhcCC-CchHHHHHhCCCCCCHH--HHHH Confidence 5666664 46666665532211 1 12356788888888887777654 45686 888888888744 2221 1111 Q ss_pred ccCCCcccccccccccccccccccccc Q lcl|Aclame:pro 416 RSAAQPAILSRQHGQRVAALATIVGPR 442 (526) Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (526) .-......... .... ........+. T Consensus 444 ri~~E~~~~~~-~~~~-~~~~~~~~~~ 468 (468) T protein:vir:96 444 RIDQEELALPS-IEEG-LNGKENNEPT 468 (468) T ss_pred HHHHHHHHHHH-Hhhc-cCCCCCCCCC Confidence 10000000000 0000 0000000000 No 171 >protein:vir:3964 Length: 453 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663672;genbank:gi:21716109;genbank:GeneID:951201 Probab=98.30 E-value=1.6e-06 Score=52.41 Aligned_cols=406 Identities=10% Similarity=0.030 Sum_probs=180.3 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHH-------cccCCCHHHHHHHHHHHHhccHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILV-------EAEQGNLQAQAELFMDMEERDAH 73 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~a~~g~~~~~~~l~~~m~~~D~~ 73 (526) |- +.+.+. |....-.......|... +..|-.+.-...++.+..+ .........-..+ ..+. T Consensus 1 ~~--~~~~~~-~~~p~d~~~~~~~l~~~---i~~~~~~~~r~~~~~~yy~g~~~i~~~~~~~~~~~~~ki------~~n~ 68 (453) T protein:vir:39 1 MK--YKPPKL-MTFPKDEPITNEVVTKF---MEKHRLEVARYEYLKNMYRGIMAIDAEPTKDLWKPDNRL------TVNF 68 (453) T ss_pred Ce--ecCCcc-eEcCCCCCCCHHHHHHH---HHHHHHHHHHHHHHHHHhhccCchhcCCCccccCcccee------ecch Confidence 21 222222 11111000000001111 1111000000011111111 0000000000000 1345 Q ss_pred HHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEee Q lcl|Aclame:pro 74 LFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLA 152 (526) Q Consensus 74 v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~ 152 (526) ..-.+.+...-+.+.+..+...+ +...+.+.+++.+. .|+..+.++. ++.-+|.++ +++|...+|...+. T Consensus 69 ~~~ivd~~~~~l~g~~~~~~~~d------~~~~~~l~~i~~~N-~~~~~~~~~~~~~~~~G~~~-~~v~~d~~g~~~i~- 139 (453) T protein:vir:39 69 TKYIVDTFTGYFNGIPVKKSHSD------KETLSKLQEFDNLN-DMEDEESELAKMACIYGRAF-ELLYQNEETQTNVI- 139 (453) T ss_pred HHHHHHHHhhhhcccCceeccCC------hHHHHHHHHHHHhc-ChhHHHHHHHHHHhhcCeEE-EEEEecCCCceEEE- Confidence 55566666677778887776432 22345677777664 4776666555 688899754 56665444543322 Q ss_pred eeeecCcee--Eecc--------------cCC-----------ceEEeccCCCCce---ee-cCCCeEEEeecCCCCccc Q lcl|Aclame:pro 153 FHHRPQSWF--QLNP--------------EDQ-----------NELRLRDNSPAGE---AL-QPFGWIIHRPRARSGYVA 201 (526) Q Consensus 153 l~~r~~~~f--~~~~--------------~~~-----------~~l~~~~~~~~g~---~l-p~~k~i~~~~~~~~g~p~ 201 (526) ..+|... .|+. ..+ ....+...+.... .. .+.+.+-..+- ..++. T Consensus 140 --~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~~yt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~--~n~~~ 215 (453) T protein:vir:39 140 --YNTPENMFMVYDDTIKQEPLFAVRYGYDDDYKLYGEVYTKETTYALNGTMGFYNMTEQAPNPFDDLPVVEF--YFNEE 215 (453) T ss_pred --EEcccceEEEecCCCCCeEEEEEEEEEeCCeEEEEEEEeCCeEEEEEecCCceeeecccccCCCceeEEEe--cCCCC Confidence 2222211 1111 000 0011111111100 00 11221111111 24678 Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHhhcCeEEEe------cCCceEEEe Q lcl|Aclame:pro 202 RSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGHAAAGII------PETMAIDFQ 275 (526) Q Consensus 202 g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~~~~~ii------p~~~~ie~~ 275 (526) |.|.+..+....=--...+..++..++.|..|+++.+-. +.++++...+ ..+..+.+ +.+.+++++ T Consensus 216 g~sd~e~v~~liDa~~~~~s~~~~~~~~~~~p~~~~~g~-~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l 287 (453) T protein:vir:39 216 RMSIFESVISLVNAFNKAISEKANDVDYFSDQYLTFLGA-AVEEEDLKNI-------RSNRVINYYGESSEAKNVDVKFL 287 (453) T ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecC-CCCchhhhhh-------hhcceeeecCCCCCCCCCceeEE Confidence 999998876666567778889999999999998887632 2223322222 22222222 345678888 Q ss_pred ecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c Q lcl|Aclame:pro 276 QAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVL-N 354 (526) Q Consensus 276 ~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~-N 354 (526) +. ......++..++.+.+.|...-.+..++.+. -|+.+.-|+. ....-....+..-.+.+...+. ++++.++.+ | T Consensus 288 t~-~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~-~gn~Sg~Al~-~~~~~l~~ka~~~~~~~~~~l~-~~~~li~~~~~ 363 (453) T protein:vir:39 288 EK-PDSDSQTENLLDRLTKLIFQTTMVANISDES-FGSSSGVSLA-YKLQAMSNLALSFQRKFQSSLN-SRYKLYCELST 363 (453) T ss_pred ee-cCCHHHHHHHHHHHHHHHHHHhCCccccccc-ccCChHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh Confidence 64 3456678899999999998876555444322 1222112221 1222223334444555666664 355555554 2 Q ss_pred CCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCC-CCCCccchhcccCCCccccccccccccc Q lcl|Aclame:pro 355 RPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGI-PQPAKNEPVLRSAAQPAILSRQHGQRVA 433 (526) Q Consensus 355 f~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Gl-p~~~~~e~~~~~~~~~~~~~~~~~~~~~ 433 (526) ..+......-..+.|....+.|....++.+.++. |+ +|.+.+.+.++. +.+. +++..-................ T Consensus 364 ~~~~~~~~~~i~v~f~~~~p~~~~~~a~~~~kl~--g~-is~et~l~~l~~v~D~~--~E~~ri~~E~~~~~~~~~~~~~ 438 (453) T protein:vir:39 364 NVSNKEAWKDIEYTFTRNEPKDIKEQAETANILM--GI-TSQETALSVISVIPDVQ--AEMEKIKKEEASTAIFDKDKQP 438 (453) T ss_pred ccCCccccccceEEeCCCCCcCHHHHHHHHHHHh--cc-CChHHHHHhCCCCCCHH--HHHHHHHHHHHHHHHHHHhccC Confidence 2221111123467888888999999999999985 66 999999999975 3222 1111100000000000000000 Q ss_pred ccccccccccccccc Q lcl|Aclame:pro 434 ALATIVGPRYGDQQA 448 (526) Q Consensus 434 ~~~~~~~~~~~~~~~ 448 (526) .............+. T Consensus 439 ~~~~~~~~~~~~~~e 453 (453) T protein:vir:39 439 SEKGTDTVVPETNEE 453 (453) T ss_pred CCCCCCCCCCCcCCC Confidence 000000000111111 No 172 >protein:vir:94956 Length: 452 # NCBI annotation: putative phage structural protein # Family: family:all:584 # MgeID: mge:1538 # MgeName: Xp15 # Cross-refs: genbank:acc:YP_239276;genbank:gi:66392058;genbank:GeneID:5076601 Probab=98.25 E-value=2.1e-06 Score=51.73 Aligned_cols=386 Identities=11% Similarity=0.079 Sum_probs=180.5 Q ss_pred CCeeecCCCCccCccccc-hhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHH----HHHHHHHHHhc---cH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLR-EPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQA----QAELFMDMEER---DA 72 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~----~~~l~~~m~~~---D~ 72 (526) |+ |+++... ....+....++..+.+ ...++.++.-.+.. ..+-|+..+.+ -+ T Consensus 1 m~---------V~~~hp~y~a~~~~W~~~rd~~~G-----------~~~~r~~g~~YLpk~~~E~~~~Y~~rl~rA~~~n 60 (452) T protein:vir:94 1 MP---------IETKHPEYLAYENDWIDCRVASLG-----------QREVKKKGVRFLPKLSGQTDDMYNAYKQRALFYS 60 (452) T ss_pred CC---------CCCcCHHHHHHHHHHHHHHHHhcC-----------hHHHHcCCcccCCCCCCCCHHHHHHHHhhccCCc Confidence 43 2222111 1111222222222211 02223332211111 11223333322 46 Q ss_pred HHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEe Q lcl|Aclame:pro 73 HLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPL 151 (526) Q Consensus 73 ~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~ 151 (526) +++..+..-...|.+.++.++-++ ....+.. -..+ .+++.+++.++ .++-||.+.+=+.|-..+++-.+. T Consensus 61 ~~~~t~~~~~G~vf~k~p~~~~p~-------~l~~~~~-D~~G-~~L~~~~~~~~~~~l~~G~~~ilVD~p~~g~rPy~~ 131 (452) T protein:vir:94 61 ITSKTLSALSGMVLDQPPVITHPD-------AMSKYFE-DQSG-IQFYEVFTRAVEETLLMGRVGVFIDRPLTGGDPYIS 131 (452) T ss_pred hHHHHHHHHhchhhcCCceecccH-------HHHHHHh-cccC-CCHHHHHHHHHHHHHhcCeEEEEEeeccCCCceEEE Confidence 777777777778888888775321 2222211 1222 25888888887 588899887766675544321111 Q ss_pred eeeeecCceeEecccC------------------------------------CceE-EeccCCCC----ceeec------ Q lcl|Aclame:pro 152 AFHHRPQSWFQLNPED------------------------------------QNEL-RLRDNSPA----GEALQ------ 184 (526) Q Consensus 152 ~l~~r~~~~f~~~~~~------------------------------------~~~l-~~~~~~~~----g~~lp------ 184 (526) .+.+..--.++++..+ .... +++..... +...+ T Consensus 132 ~~~~~~Ii~W~~~~~g~l~~v~lre~~~~~d~~d~f~~~~~~~yRvL~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 211 (452) T protein:vir:94 132 VYTTENILNWEEDEDGRLLMVVLREFYTVRDTADRYVQNIRVRYRCLELVDGLLQITVHETQDGKVWELAKTSTIQNVGV 211 (452) T ss_pred EechhhhcCccccccCCeeEEEEEEEEEEecCCCcccceeEEEEEEEEEeCCeEEEEEEEccCCceeeeccceeecCCCc Confidence 1110000000001000 0001 01111100 00000 Q ss_pred CCCeEEEe--ecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHhhcCe Q lcl|Aclame:pro 185 PFGWIIHR--PRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGHAA 262 (526) Q Consensus 185 ~~k~i~~~--~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~~~ 262 (526) +..+|-+. +....+--.+.+.|..++..-+--.....+.-.-+..-|.|+++..-.... . . -.+|+++ T Consensus 212 ~l~~IP~v~~~~~~~~~~~~~pPLl~LA~ln~~hy~~~sd~~~~l~~~~~P~l~~~g~~~~---~--~-----i~iG~~~ 281 (452) T protein:vir:94 212 TMDYIPFFCITPSGLSMTPAKPPMIDIVDINYSHYRTSADLEHGRHFTGLPTPWITGAESQ---S--T-----MHIGSTK 281 (452) T ss_pred ccceeEEEEEcCCCCCCCCCccchHHHHHHHHHHhcchhHHHHHHHHcccceeEeecCcCC---C--c-----eEecccc Confidence 11222111 222222334555566666554433334455666777778888887632211 1 1 2469999 Q ss_pred EEEecC-CceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 263 AGIIPE-TMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAAT 341 (526) Q Consensus 263 ~~iip~-~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ 341 (526) +..+|+ |.++.|++.++++...+...++.+.++|..+ .+..+.... .+..++.|. .........++.+-+..+++. T Consensus 282 ~~~lpe~~~~~~yie~~g~~i~~~~~~l~~le~~m~~~-Ga~ll~~~~-~~~~s~ea~-~~~~~~~~s~L~~~a~~~e~a 358 (452) T protein:vir:94 282 AWVIPEVAAKVGFLEFTGQGLQSLEKALSEKQAQLASL-SARLIDNST-RGSEATETV-KLRYMSETASLKSVTRAVEAL 358 (452) T ss_pred cccCCCCCCcceEEccCchhHHHHHHHHHHHHHHHHHH-HHHhhccCC-CcchHHHHH-HHHHHHhhHHHHHHHHHHHHH Confidence 999996 9999999987666677777787777777432 222333221 111122222 123333357788888899999 Q ss_pred HHHHHHHHHHHhcCCCCCCcccceeEEecC--cc-ccCHHHHHHHHHHHHhCCCcCCHHHHHHHh---CCCCCCccchhc Q lcl|Aclame:pro 342 LSRDLLWPLLVLNRPGSPDVRRAPRLVFDL--RE-QADITSMAQSIPALVNVGLEIPSAWVYDKL---GIPQPAKNEPVL 415 (526) Q Consensus 342 ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~--~e-~edl~~~a~~~~~l~~~G~~v~~~~~~e~~---Glp~~~~~e~~~ 415 (526) ++ +++++++.+-.-.. . .+|++.. .. ..| ....+++.++...|. ++.+.+++.+ |+..++.+++.+ T Consensus 359 l~-~~l~~~a~w~g~~~-~----~~v~~n~dF~~~~~~-~~~~~al~~~~~~G~-is~~t~~~~L~~~gvl~~~~e~~~i 430 (452) T protein:vir:94 359 LN-KAYSCIMDMESMGG-T----LNIKLNSAFLDSKLT-AAELKAWVEAYLSGG-ISKEIYIHALKVGKVLPPPGESMGV 430 (452) T ss_pred HH-HHHHHHHHHcCCCC-c----eEEEeccccccccCC-HHHHHHHHHHHhcCC-CcHHHHHHHHHhCCCCCCccCHHHH Confidence 96 58888888654321 1 2344321 11 223 345566667788886 8887666666 887766554332 Q ss_pred ccCCC-cccccccccccccccc Q lcl|Aclame:pro 416 RSAAQ-PAILSRQHGQRVAALA 436 (526) Q Consensus 416 ~~~~~-~~~~~~~~~~~~~~~~ 436 (526) ....+ +.+.+...+...++.+ T Consensus 431 ~~E~~~~~~~~~~~~~~~~~~~ 452 (452) T protein:vir:94 431 IPDPPAPEPSPSNTPPNPSSKA 452 (452) T ss_pred HHHhhccCcccCCCCCCCccCC Confidence 21111 1111111110111110 No 173 >protein:vir:4898 Length: 502 # NCBI annotation: gp502 # Family: family:all:125 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056676;genbank:gi:9635011;genbank:GeneID:1262662 Probab=98.24 E-value=2.1e-06 Score=51.66 Aligned_cols=430 Identities=11% Similarity=-0.004 Sum_probs=186.4 Q ss_pred CCe---eecCCCCccCccccchhhhh---------------hhhhhhhhhhhhhhcccCHHHHHHHHHcccCCC---HHH Q lcl|Aclame:pro 1 MAQ---IVDVYGNPIRTQQLREPQTS---------------RLAGLAKEFAQHPAKGLTPAKLARILVEAEQGN---LQA 59 (526) Q Consensus 1 m~~---~~~~~g~p~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~---~~~ 59 (526) |.. .++..|.-.- ...+....+ ...-+.+-+..|-.+.. .|+....+ --.|. +.. T Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~h~~~~~--~rl~~l~~-yY~g~~~~i~~ 76 (502) T protein:vir:48 1 MMEQTLFTDSTGQDLV-LNLRFHRESRIRYRADNLEELMVNNWELLKNFINHHKLRQA--PRIQELLD-YARGENHDVLK 76 (502) T ss_pred CceeEEEEecchhHHH-hhcccChhHHhhhcccchhhhccccHHHHHHHHHHHHHHHH--HHHHHHHH-HhcCCCccccc Confidence 221 2222222100 000000000 00001111111110000 01111100 00110 000 Q ss_pred HHHHHHHH-----HhccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-Hhhhhc Q lcl|Aclame:pro 60 QAELFMDM-----EERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHG 133 (526) Q Consensus 60 ~~~l~~~m-----~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G 133 (526) ... ..+. .-......-.+.....-+.+.+..+...++ ...+.+.+++.+++... .|+....+++ ++.-|| T Consensus 77 ~~~-~~~~~~~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~~~d~--~~~~~~~~~l~~~~~~N-~~~~~~~~~~~~~~~~G 152 (502) T protein:vir:48 77 SGR-RKDNEMADKRAVHNYGRMISKFKTGYLAGNPIRVEYDDN--EDNSQNDDAIKRIGRIN-DIDTHNRNLIRDLSQTG 152 (502) T ss_pred ccc-ccccccccceeecchHHHHHHHHhhhhcccCeeEecCCc--cchhHHHHHHHHHHhhc-CHhHHHHHHHHHHhhcC Confidence 000 0000 001244455566666677888888876443 33455677888887764 5888888776 688899 Q ss_pred ceeeeEEEeecCCeeEEeeeeeecCcee--Eeccc-CCce---EEec----------------c-------CCCCcee-- Q lcl|Aclame:pro 134 YSCIELEWALQGREWMPLAFHHRPQSWF--QLNPE-DQNE---LRLR----------------D-------NSPAGEA-- 182 (526) Q Consensus 134 ~s~~Ei~w~~~~g~~~~~~l~~r~~~~f--~~~~~-~~~~---l~~~----------------~-------~~~~g~~-- 182 (526) .+. +++|...+|...+. ..+|... .|+.. .+.. +++. . ....... T Consensus 153 ~a~-~~v~~dedg~~~i~---~~~p~~~~~vydd~~~~~~~~~ir~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~ 228 (502) T protein:vir:48 153 RAY-EVIYRSEYDETRIK---RLSPLETFVIYDNSLEDNSIAAVRYYNRGTLQNAKDVVEIYTNQHIYTLDASDSFNEIS 228 (502) T ss_pred eEE-EEEEeCCCCceEEE---EEcccceEEEEcCCCCCceEEEEEEEEEeecCCcEEEEEEEeCCeEEEEEeCCceeecc Confidence 754 67776555554333 2232211 12211 0110 0000 0 0000000 Q ss_pred --ecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHH-HHHHHHHHHHhh Q lcl|Aclame:pro 183 --LQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEE-KATLLRAVTGLG 259 (526) Q Consensus 183 --lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e-~~~l~~al~~~~ 259 (526) -.++..|-..+ -..++.|.|.+..+....=--...+..++..++.|..|+++.+-.....+++ ...+. ....+. T Consensus 229 ~~~~~~g~vPvv~--~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~-~~~~~~ 305 (502) T protein:vir:48 229 VTPHAFGTVPITE--FLNNADGIGDYETELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPQGMQASDMK-RTRLMQ 305 (502) T ss_pred ceecCCCccceEE--ecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecCcccccccchhhhh-hcceee Confidence 01111111111 1357789999988776666666788889999999999999877533222221 11111 101110 Q ss_pred ---cCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 260 ---HAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDAR 336 (526) Q Consensus 260 ---~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~ 336 (526) .......+.+.+++++... .....++.+++.+.+.|.+.-..+.++.+...++.+.-|+ +....-....+..-.+ T Consensus 306 ~~~~~~~~~~~~~~d~~~l~~~-~~~~~~~~~~~~L~~~I~~~s~~p~~~~~~~~~n~Sg~Al-k~~~~~l~~k~~~~~~ 383 (502) T protein:vir:48 306 LKPPKSADGKEGTVKAEYLTKS-YDVSGAEAYKTRLNKDIHVFTNTPDMSDNHFSGNASGEAL-KYKLFGLDQDRVDTQS 383 (502) T ss_pred ccccccccccccCcceeEeeec-CCHHHHHHHHHHHHHHHHHHhCCCCcCccccccCchHHHH-HHHHHHHHHHHHHHHH Confidence 0111112345678888643 3445688889999999988765555544322111111111 1111112233334445 Q ss_pred HHHHHHHHHHHHHHHHh-cCC--CCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCC-CCCCccc Q lcl|Aclame:pro 337 QLAATLSRDLLWPLLVL-NRP--GSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGI-PQPAKNE 412 (526) Q Consensus 337 ~i~~~ln~~li~~l~~~-Nf~--~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Gl-p~~~~~e 412 (526) .+...|. ++++.++.+ +.- ..........+.|....+.|.++.++.+.++. |+ +|.+.+.+.++. +.+..+- T Consensus 384 ~~~~~l~-~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~d~~e~a~~~~kl~--g~-iS~et~l~~l~~v~D~~~E~ 459 (502) T protein:vir:48 384 QFTQGLK-RRYRLAARIGSLVNEFKDFDESRLKITFTPNLPKSLYEQVSILNDLG--GQ-VSQETALSLSGLVENPTEEL 459 (502) T ss_pred HHHHHHH-HHHHHHHHHHhhcccccccccccceEEeCCCCCcCHHHHHHHHHHHh--cc-CcHHHHHHhCCCCCCHHHHH Confidence 5666664 345554443 211 11111123578888888999999999999985 65 899999999875 2222110 Q ss_pred hhcccCCCc----ccccccccccccccccccccccccccchHH Q lcl|Aclame:pro 413 PVLRSAAQP----AILSRQHGQRVAALATIVGPRYGDQQALDK 451 (526) Q Consensus 413 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (526) .-+...... ..+........................+.+ T Consensus 460 ~ri~~E~~~~~~~~~~~~~~~~~~~~~d~~~e~~~~~~~~~~~ 502 (502) T protein:vir:48 460 DKINEESSKIDFKGYPSYFYDNVGKYTDEVKETHTDDFERVYE 502 (502) T ss_pred HHHHHHHHhhhhhcccccccccccccCCCccCCCCcCcCCCCC Confidence 101000000 000000000000000000111111111221 No 174 >protein:vir:96366 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239644;genbank:gi:66395376;genbank:GeneID:5132842 Probab=98.24 E-value=2.2e-06 Score=51.62 Aligned_cols=423 Identities=11% Similarity=-0.043 Sum_probs=183.6 Q ss_pred CCeeecCCCCccCccccchh--hhhhhhhhh-----hhhh---hhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHH-- Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREP--QTSRLAGLA-----KEFA---QHPAKGLTPAKLARILVEAEQGNLQAQAELFMDME-- 68 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~--~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~-- 68 (526) |- ++...+.- -+.++-..- ..+. .-.....++..+..++.........++..+++... T Consensus 1 ~~----------~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~ 70 (511) T protein:vir:96 1 ML----------KVNEFETDTDLRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGK 70 (511) T ss_pred Cc----------cccchhhhhhhhhhhhhhhhhhhCCcccccchhhhhhcCHHHHHHHHHHHHHhhhHHHHHHHHHhhcc Confidence 11 11111100 000000000 0000 00111223444444444332222222222222110 Q ss_pred ----h---------------ccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-H Q lcl|Aclame:pro 69 ----E---------------RDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-D 128 (526) Q Consensus 69 ----~---------------~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-d 128 (526) . ......-.+.+...-+.+.+..+...+ +...+.+..++... .|+.....+. + T Consensus 71 ~~il~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d------~~~~~~l~~~~~~n-~~~~~~~~~~~~ 143 (511) T protein:vir:96 71 TKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDD------KDVLEAIEAFNDLN-DVESHNRSLGLD 143 (511) T ss_pred CccccccCcccccccCcceeecchHHHHHHHHhhhhcccCceeecCc------hHHHHHHHHHHhhc-ChhHHHHHHHHH Confidence 0 013444556666667778787776422 23446677777654 4777777666 5 Q ss_pred hhhhcceeeeEEEeecCCeeEEeeeeeecCcee--EecccC-Cce-------------------------------EEec Q lcl|Aclame:pro 129 GIGHGYSCIELEWALQGREWMPLAFHHRPQSWF--QLNPED-QNE-------------------------------LRLR 174 (526) Q Consensus 129 a~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f--~~~~~~-~~~-------------------------------l~~~ 174 (526) +.-||. +.+++|...+|...+.. .+|+.. .|+... +.. ..+. T Consensus 144 ~~~~G~-a~~~vy~d~dg~~~i~~---~~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~ 219 (511) T protein:vir:96 144 LSIYGK-AYELMIRNQDDETRLYK---SDAMSTFIIYDNTVERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYL 219 (511) T ss_pred HHhcCe-eEEEEEeCCCCceEEEE---EcccceEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEE Confidence 788996 45677765556544332 222211 111111 000 0010 Q ss_pred cCCCCceee---------cCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH Q lcl|Aclame:pro 175 DNSPAGEAL---------QPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTAD 245 (526) Q Consensus 175 ~~~~~g~~l---------p~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~ 245 (526) .++..+..+ .+...+-... -..++.|.|.+..+....=--...++.++..++.|+.|+++.+-..+... T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~g~vPvv~--~~n~~~g~gd~e~v~~liDa~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~ 297 (511) T protein:vir:96 220 TNRTNGLKLTPRENSFESHSFERMPITE--FSNNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDP 297 (511) T ss_pred ecCCCcccccccccccccCcCcccceEE--ecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhcchhheecCccCCc Confidence 011100000 0111110000 02356789999887655555566788899999999999888775333433 Q ss_pred HHHHHHHHHHHHhhcC------eEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhh Q lcl|Aclame:pro 246 EEKATLLRAVTGLGHA------AAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFAL 319 (526) Q Consensus 246 ~e~~~l~~al~~~~~~------~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~ 319 (526) ++.......-.-.... ...-...+.++++++. ..+...++..++++.+.|...-..+.++.+...++.+.-|+ T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~~n~Sg~Al 376 (511) T protein:vir:96 298 VEVRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYK-QYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAM 376 (511) T ss_pred hhhcccccccceeccccceeccccccCCCCcceeEEee-cCCHHHHHHHHHHHHHHHHHHhCCccccccccccccHHHHH Confidence 3322211110000001 1111233567888864 34456788999999999988766666554432222211122 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCCCc-ccceeEEecCccccCHHHHHHHHHHHHhCCCcCC Q lcl|Aclame:pro 320 GQVHNEVRHDLLASDARQLAATLSRDLLWPLLVL---NRPGSPDV-RRAPRLVFDLREQADITSMAQSIPALVNVGLEIP 395 (526) Q Consensus 320 ~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~---Nf~~~~~~-~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~ 395 (526) . ....-....+..-.+.+...|++ +++.++.+ ........ ..-.++.|....+.|..+.++.+.+|+ |+ +| T Consensus 377 ~-~~~~~l~~ka~~~~~~f~~~l~~-~~~li~~~~~~~~~~~~~~~~~~i~~~f~~~~p~n~~e~~d~~~kl~--G~-iS 451 (511) T protein:vir:96 377 K-YKLFGLEQRTKTKEGLFTKGLRR-RAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSG--GK-IS 451 (511) T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCccccccccceEEeCCCCCcCHHHHHHHHHHHh--cc-CC Confidence 1 11112222333444556666643 45554443 11111111 123478888888999999999999985 66 89 Q ss_pred HHHHHHHhCC-CCCCccchhcccCCCcccccc--cccccccccccccccccccccchHHHHHHH Q lcl|Aclame:pro 396 SAWVYDKLGI-PQPAKNEPVLRSAAQPAILSR--QHGQRVAALATIVGPRYGDQQALDKALADL 456 (526) Q Consensus 396 ~~~~~e~~Gl-p~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (526) .+.+.+.++. +.+..+-+-+........... ............... .......++. . T Consensus 452 ~et~l~~l~~v~d~~~El~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~---~ 511 (511) T protein:vir:96 452 QTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQD-DDTKDTVDKK---E 511 (511) T ss_pred hHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCC-CCccCccccc---C Confidence 9988888864 222111110110000000000 000000000000000 0000000000 0 No 175 >protein:vir:78805 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285356;genbank:gi:148717884;genbank:GeneID:5246936 Probab=98.24 E-value=2.2e-06 Score=51.62 Aligned_cols=423 Identities=11% Similarity=-0.043 Sum_probs=183.6 Q ss_pred CCeeecCCCCccCccccchh--hhhhhhhhh-----hhhh---hhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHH-- Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREP--QTSRLAGLA-----KEFA---QHPAKGLTPAKLARILVEAEQGNLQAQAELFMDME-- 68 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~--~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~-- 68 (526) |- ++...+.- -+.++-..- ..+. .-.....++..+..++.........++..+++... T Consensus 1 ~~----------~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~ 70 (511) T protein:vir:78 1 ML----------KVNEFETDTDLRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGK 70 (511) T ss_pred Cc----------cccchhhhhhhhhhhhhhhhhhhCCcccccchhhhhhcCHHHHHHHHHHHHHhhhHHHHHHHHHhhcc Confidence 11 11111100 000000000 0000 00111223444444444332222222222222110 Q ss_pred ----h---------------ccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-H Q lcl|Aclame:pro 69 ----E---------------RDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-D 128 (526) Q Consensus 69 ----~---------------~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-d 128 (526) . ......-.+.+...-+.+.+..+...+ +...+.+..++... .|+.....+. + T Consensus 71 ~~il~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d------~~~~~~l~~~~~~n-~~~~~~~~~~~~ 143 (511) T protein:vir:78 71 TKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDD------KDVLEAIEAFNDLN-DVESHNRSLGLD 143 (511) T ss_pred CccccccCcccccccCcceeecchHHHHHHHHhhhhcccCceeecCc------hHHHHHHHHHHhhc-ChhHHHHHHHHH Confidence 0 013444556666667778787776422 23446677777654 4777777666 5 Q ss_pred hhhhcceeeeEEEeecCCeeEEeeeeeecCcee--EecccC-Cce-------------------------------EEec Q lcl|Aclame:pro 129 GIGHGYSCIELEWALQGREWMPLAFHHRPQSWF--QLNPED-QNE-------------------------------LRLR 174 (526) Q Consensus 129 a~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f--~~~~~~-~~~-------------------------------l~~~ 174 (526) +.-||. +.+++|...+|...+.. .+|+.. .|+... +.. ..+. T Consensus 144 ~~~~G~-a~~~vy~d~dg~~~i~~---~~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~ 219 (511) T protein:vir:78 144 LSIYGK-AYELMIRNQDDETRLYK---SDAMSTFIIYDNTVERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYL 219 (511) T ss_pred HHhcCe-eEEEEEeCCCCceEEEE---EcccceEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEE Confidence 788996 45677765556544332 222211 111111 000 0010 Q ss_pred cCCCCceee---------cCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH Q lcl|Aclame:pro 175 DNSPAGEAL---------QPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTAD 245 (526) Q Consensus 175 ~~~~~g~~l---------p~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~ 245 (526) .++..+..+ .+...+-... -..++.|.|.+..+....=--...++.++..++.|+.|+++.+-..+... T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~g~vPvv~--~~n~~~g~gd~e~v~~liDa~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~ 297 (511) T protein:vir:78 220 TNRTNGLKLTPRENSFESHSFERMPITE--FSNNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDP 297 (511) T ss_pred ecCCCcccccccccccccCcCcccceEE--ecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhcchhheecCccCCc Confidence 011100000 0111110000 02356789999887655555566788899999999999888775333433 Q ss_pred HHHHHHHHHHHHhhcC------eEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhh Q lcl|Aclame:pro 246 EEKATLLRAVTGLGHA------AAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFAL 319 (526) Q Consensus 246 ~e~~~l~~al~~~~~~------~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~ 319 (526) ++.......-.-.... ...-...+.++++++. ..+...++..++++.+.|...-..+.++.+...++.+.-|+ T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~~n~Sg~Al 376 (511) T protein:vir:78 298 VEVRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYK-QYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAM 376 (511) T ss_pred hhhcccccccceeccccceeccccccCCCCcceeEEee-cCCHHHHHHHHHHHHHHHHHHhCCccccccccccccHHHHH Confidence 3322211110000001 1111233567888864 34456788999999999988766666554432222211122 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCCCc-ccceeEEecCccccCHHHHHHHHHHHHhCCCcCC Q lcl|Aclame:pro 320 GQVHNEVRHDLLASDARQLAATLSRDLLWPLLVL---NRPGSPDV-RRAPRLVFDLREQADITSMAQSIPALVNVGLEIP 395 (526) Q Consensus 320 ~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~---Nf~~~~~~-~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~ 395 (526) . ....-....+..-.+.+...|++ +++.++.+ ........ ..-.++.|....+.|..+.++.+.+|+ |+ +| T Consensus 377 ~-~~~~~l~~ka~~~~~~f~~~l~~-~~~li~~~~~~~~~~~~~~~~~~i~~~f~~~~p~n~~e~~d~~~kl~--G~-iS 451 (511) T protein:vir:78 377 K-YKLFGLEQRTKTKEGLFTKGLRR-RAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSG--GK-IS 451 (511) T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCccccccccceEEeCCCCCcCHHHHHHHHHHHh--cc-CC Confidence 1 11112222333444556666643 45554443 11111111 123478888888999999999999985 66 89 Q ss_pred HHHHHHHhCC-CCCCccchhcccCCCcccccc--cccccccccccccccccccccchHHHHHHH Q lcl|Aclame:pro 396 SAWVYDKLGI-PQPAKNEPVLRSAAQPAILSR--QHGQRVAALATIVGPRYGDQQALDKALADL 456 (526) Q Consensus 396 ~~~~~e~~Gl-p~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (526) .+.+.+.++. +.+..+-+-+........... ............... .......++. . T Consensus 452 ~et~l~~l~~v~d~~~El~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~---~ 511 (511) T protein:vir:78 452 QTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQD-DDTKDTVDKK---E 511 (511) T ss_pred hHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCC-CCccCccccc---C Confidence 9988888864 222111110110000000000 000000000000000 0000000000 0 No 176 >protein:vir:96240 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239567;genbank:gi:66395299;genbank:GeneID:5132789 Probab=98.22 E-value=2.4e-06 Score=51.40 Aligned_cols=423 Identities=11% Similarity=-0.037 Sum_probs=188.2 Q ss_pred CC------eeecCCCCc---cCccccchhhhhhhhhhhhhh-hhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHH-- Q lcl|Aclame:pro 1 MA------QIVDVYGNP---IRTQQLREPQTSRLAGLAKEF-AQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDME-- 68 (526) Q Consensus 1 m~------~~~~~~g~p---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~-- 68 (526) |- +.+|..|+. |+... ...-.| ..-.-...++..+..++.........++..+.+... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~----------n~~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~ 70 (511) T protein:vir:96 1 MLKVNEFETDTDLRGNINYLFNDEA----------NVVYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGK 70 (511) T ss_pred Cccccchhhhhhhhhhhhhhhhhhh----------CCccccchhhhhhhccHHHHHHHHHHHHHhhHHHHHHHHHHhccc Confidence 11 111111210 00000 000000 000011123444444444322222222222222111 Q ss_pred -----h--------------ccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-H Q lcl|Aclame:pro 69 -----E--------------RDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-D 128 (526) Q Consensus 69 -----~--------------~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-d 128 (526) . ......-.+.+...-+.+.+..+...+ ....+++.+++... .|+....++. + T Consensus 71 ~~i~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~~------~~~~~~l~~~~~~n-~~~~~~~~~~~~ 143 (511) T protein:vir:96 71 TKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDD------KDVLEAIEAFNDLN-DVESHNRSLGLD 143 (511) T ss_pred CccccccCcCcccccCcceeecchHHHHHHHHHhhhccCCceeecCc------hHHHHHHHHHHhhc-CHHHHHHHHHHH Confidence 0 023445556666677788888876432 23446677777664 4777777666 6 Q ss_pred hhhhcceeeeEEEeecCCeeEEeeeeeecCceeE--ecccC-Cce-------------------------------EEec Q lcl|Aclame:pro 129 GIGHGYSCIELEWALQGREWMPLAFHHRPQSWFQ--LNPED-QNE-------------------------------LRLR 174 (526) Q Consensus 129 a~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~--~~~~~-~~~-------------------------------l~~~ 174 (526) +.-||. +.+++|...+|...+. ..+|..+. |+... +.. ..+. T Consensus 144 ~~i~G~-a~~~vy~ded~~~~i~---~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~d~~~~~~~~~~~iyt~~~i~~~~ 219 (511) T protein:vir:96 144 LSIYGK-AYELMIRNQDDETRLY---KSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYL 219 (511) T ss_pred HHhcCe-eEEEEEeCCCCceEEE---EEccceeEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEE Confidence 888997 5667776555554433 22332211 11111 000 0000 Q ss_pred cCCCCcee---------ecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH Q lcl|Aclame:pro 175 DNSPAGEA---------LQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTAD 245 (526) Q Consensus 175 ~~~~~g~~---------lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~ 245 (526) ..+..+.. -.+...|-..+- ..+..|.|.+..+....=--...++.++..++.|+.|+++.+-....+. T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~vPvv~~--~nn~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~ 297 (511) T protein:vir:96 220 TSRTNGLKLTPRENGFESHSFERMPITEF--SNNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDP 297 (511) T ss_pred ecCCCcccccccccccccccCCceeeEEe--cCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecCccCCc Confidence 00000000 001111111111 2356789999988777666677889999999999999998775333333 Q ss_pred HHHHHHHH-HH---HHhh--cCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhh Q lcl|Aclame:pro 246 EEKATLLR-AV---TGLG--HAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFAL 319 (526) Q Consensus 246 ~e~~~l~~-al---~~~~--~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~ 319 (526) .+.....+ .+ .... .....-...+.++++++. ..+...++..++.+.+.|...-..+.++.+...++.+.-|+ T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~e~~~~~L~~~I~~~s~~p~~~~~~~~~n~Sg~Al 376 (511) T protein:vir:96 298 VEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYK-QYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAM 376 (511) T ss_pred hhhcccccccceecccccccccccccCCCCcceeEEee-cCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHH Confidence 32221110 00 1100 011111234677888874 34456789999999999988776666655432222111121 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC--CCCCCc-ccceeEEecCccccCHHHHHHHHHHHHhCCCcCC Q lcl|Aclame:pro 320 GQVHNEVRHDLLASDARQLAATLSRDLLWPLLVL-NR--PGSPDV-RRAPRLVFDLREQADITSMAQSIPALVNVGLEIP 395 (526) Q Consensus 320 ~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~-Nf--~~~~~~-~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~ 395 (526) .....-....+..-.+.+...|++ +++.++.+ +. ...... ..-.++.|....+.|..+.++.+.++. |+ +| T Consensus 377 -~~~~~~l~~k~~~k~~~~~~~l~~-~~~li~~~~~~~~~~~~~~d~~~i~~~f~~~~p~n~~e~~~~~~kl~--G~-iS 451 (511) T protein:vir:96 377 -KYKLFGLEQRTKTKEGLFTKGLRR-RAKLLETILKNTWSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSG--GK-IS 451 (511) T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCcccccccccceEEeCCCCCCCHHHHHHHHHHHh--cc-CC Confidence 111122233334444556666653 45555443 22 111111 123578888888999999999999884 66 89 Q ss_pred HHHHHHHhCC-CCCCccchhcccCCCcccccc--cccccccccccccccccccccchHHHHHHH Q lcl|Aclame:pro 396 SAWVYDKLGI-PQPAKNEPVLRSAAQPAILSR--QHGQRVAALATIVGPRYGDQQALDKALADL 456 (526) Q Consensus 396 ~~~~~e~~Gl-p~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (526) .+.+.+.++. +.+..+-+-+........... ............... .......++. . T Consensus 452 ~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~ 511 (511) T protein:vir:96 452 QTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQD-DDTKDTVDKK---E 511 (511) T ss_pred hHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCC-Cccccccccc---C Confidence 9999898875 222211000000000000000 000000000000000 0000000000 0 No 177 >protein:vir:102950 Length: 471 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945279;genbank:gi:39653714;interpro:IPR006428;uniprot:Q708N3;genbank:GeneID:2672864 Probab=98.21 E-value=2.6e-06 Score=51.23 Aligned_cols=387 Identities=10% Similarity=0.025 Sum_probs=174.4 Q ss_pred cCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCC--HHHHHHHHH-H-------H----------Hhcc Q lcl|Aclame:pro 12 IRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGN--LQAQAELFM-D-------M----------EERD 71 (526) Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~--~~~~~~l~~-~-------m----------~~~D 71 (526) ++...+.+-... -+..|..+.-...++.+.. .|. +......++ . . .-.. T Consensus 1 ~~~e~~~~~i~~-------~~~~~~~~~~~~~~~~~Yy----~g~hdi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~ 69 (471) T protein:vir:10 1 MEIEVIKKIISS-------QMVKHGKFVSQAAEAEKYY----RNENDIKRKRKPADKKGAENEAKAEDNAFRNADNRISH 69 (471) T ss_pred CCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh----ccccccccccchhhhhcccccccccccccccccceecc Confidence 221111111000 0000000000001111111 111 000000000 0 0 0012 Q ss_pred HHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEe-ecCCeeE Q lcl|Aclame:pro 72 AHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWA-LQGREWM 149 (526) Q Consensus 72 ~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~-~~~g~~~ 149 (526) +...-.+.+...-+.+.+..+... +....+.+..++.+ +|+.....+. ++..+|.+. +++|. ..+|.+. T Consensus 70 n~~~~Ivd~~~~yl~G~p~~~~~~------~~~~~~~l~~~~~n--~~~~~~~~~~~~~~~~G~~~-~~v~~d~~~g~~~ 140 (471) T protein:vir:10 70 NWHQLLLDQKKAYALTYPPTFDVD------DKKVNDMIVDVLGD--DYERISKQLCVNAGNAGIAW-LHVWKDASDNSFR 140 (471) T ss_pred chhHHHHHhhhhhhcccCceeccC------ChHHHHHHHHHHhc--CHHHHHHHHHHHHhhCCeEE-EEEEeeCCCCeeE Confidence 334445566666677777766532 22345667777653 5788777766 588899766 45553 3456554 Q ss_pred EeeeeeecCcee--EecccCC-ce---EE--------------------------eccCCCC------------------ Q lcl|Aclame:pro 150 PLAFHHRPQSWF--QLNPEDQ-NE---LR--------------------------LRDNSPA------------------ 179 (526) Q Consensus 150 ~~~l~~r~~~~f--~~~~~~~-~~---l~--------------------------~~~~~~~------------------ 179 (526) +..+ +|+.. .|+.... .. ++ +...+.. T Consensus 141 ~~~~---~p~~~~~i~d~~~~~~~~~~ir~~~~~~~~~~~~~~~~~vy~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 217 (471) T protein:vir:10 141 YACV---DSKEVIPIYSKSLDKKSIGVLRVYSSIDETDGKNYTVYEYWNDKECSFYRHEKEKPLEELETFQAISLIDTMN 217 (471) T ss_pred EEEE---cccceEEEEcCCCCCceEEEEEEEEeeccCCCceeEEEEEEeCCcEEEEEecCCccccccccccccccccccc Confidence 4322 22211 1111100 00 00 0000000 Q ss_pred c-----eee-cCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHH Q lcl|Aclame:pro 180 G-----EAL-QPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLR 253 (526) Q Consensus 180 g-----~~l-p~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~ 253 (526) + ... .+++.|-..+- ..|..|.|.+..+-...=--...+++++..++.|+.|+++.+-..+...+ + T Consensus 218 ~~~~~~~~~~~~~g~iPvv~~--~n~~~~~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~------~ 289 (471) T protein:vir:10 218 GDRSSDNSFKHDFGLVPFIPF--KNNEIETNDLKPIKDLVDVYDKVFSGFVNDTDDVQEVIFVLTNYGGQDKQ------E 289 (471) T ss_pred ccccccccccCCCCceeEEEe--ccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCccccc------h Confidence 0 000 01111111110 13456788888766555555667889999999999999888753333222 2 Q ss_pred HHHHhhcCeEEEecC-----CceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHH Q lcl|Aclame:pro 254 AVTGLGHAAAGIIPE-----TMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRH 328 (526) Q Consensus 254 al~~~~~~~~~iip~-----~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~ 328 (526) .+.++.....+.++. +..+++++.. .....++..++.+.+.|...-.++.++.+.. | ..|.-.-+....-.. T Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~~~I~~~s~tp~~~~~~~-g-n~Sg~Alk~~~~~l~ 366 (471) T protein:vir:10 290 FLEDLKRYKMIKMDNDGMGDQSGVTTIAID-IPTEARNLILERTKKQIFISGQGVNPETDKL-G-NSSGVALKFLYSLLE 366 (471) T ss_pred hHHHhhcCCeEEecCCCCccCccceEEeec-CChHHHHHHHHHHHHHHHHHhCCcCCCcccc-c-CccHHHHHHHHHHHH Confidence 233444444555543 3478888743 3456789999999999988765555543321 1 112111111111122 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCC-CC Q lcl|Aclame:pro 329 DLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGI-PQ 407 (526) Q Consensus 329 ~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Gl-p~ 407 (526) ..+..-.+.+...| +++++.++.+.-.. + .....+.|....+.|.++.++.+.++. |+ +|.+.+.+.++. .. T Consensus 367 ~k~~~~~~~~~~~l-~~~~~li~~~~~~~--d-~~~i~i~f~~~~p~n~~e~~~~~~kl~--g~-iS~et~~~~~p~v~D 439 (471) T protein:vir:10 367 LKAGNMETQFRSGY-ATLVKMILKHLGLS--D-KLKIKQTWTRNSINNDTEMAQVVSTLA--TI-TSRENVAKSNPIVED 439 (471) T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhccC--C-CceeEEEeCCCCCCCHHHHHHHHHHHh--cc-CchHHHHHhCCCCCC Confidence 23444445556666 34666666543211 1 123468888899999999999999984 66 999999998854 22 Q ss_pred CCccchhcccCCCcccccccccccccccccccccccccccchH Q lcl|Aclame:pro 408 PAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALD 450 (526) Q Consensus 408 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (526) +..+-+-+.... ........... ...+...++ T Consensus 440 ~~~E~eri~~E~--~~~~~~~~~~~---------~~~~~~e~~ 471 (471) T protein:vir:10 440 WQDELRLQKAEQ--EGRSEKLYDME---------EVEHESEVE 471 (471) T ss_pred HHHHHHHHHHHH--HHHHhcccccC---------CCCCccccC Confidence 211100000000 00000000000 000000111 No 178 >protein:vir:7768 Length: 484 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817602;genbank:gi:29566032;genbank:GeneID:1259226 Probab=98.16 E-value=3.3e-06 Score=50.63 Aligned_cols=427 Identities=11% Similarity=-0.004 Sum_probs=166.0 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHH-HHHHHHHHh---ccHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQ-AELFMDMEE---RDAHLFA 76 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~-~~l~~~m~~---~D~~v~s 76 (526) |+.++=..-. +....+ +..+.+.+..|..+ ..++.+..+. .+ ++... ..+-..+.. .-....- T Consensus 1 ~~~~~~~~~~-~~~~~~-------~~~l~~~~~~~~~r---l~~l~~Yy~G-~~-~i~~~~~~~~~~~~~~~~~~n~~~~ 67 (484) T protein:vir:77 1 MTSPLQKQEN-VDPEKA-------REEMLNLFTERTQD---LGDNTAYYES-ER-RPDAVGVTVPQQMQKLLAHVGYPRL 67 (484) T ss_pred CCCcccccCC-CCHHHH-------HHHHHHHHHHHHHH---HHHHHHHHhc-cc-cchhcccccchhHHhhhhhcCcHHH Confidence 6653322211 111110 11122222222111 0111111111 00 01000 000001100 0111111 Q ss_pred HHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeE-----E Q lcl|Aclame:pro 77 EMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWM-----P 150 (526) Q Consensus 77 ~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~-----~ 150 (526) ++++....+..-.|.+ ++++ . ..+.+.+++... .|+....+++ +|.-||.| ++++|...++... . T Consensus 68 ivd~~~~~l~~~g~~~--~~~~-~----~~~~l~~i~~~N-~~d~~~~~~~~~a~~~G~a-~~~v~~~~~~~~~~~~~~~ 138 (484) T protein:vir:77 68 YIDAIAARQELEGFRL--GGAD-K----ADEQLWDWWQAN-DLDIESTLGHTDSLVHGRS-YITISKPDPNIDPGVDPEV 138 (484) T ss_pred HHHHHHhhhccCceec--CCcc-h----hHHHHHHHHHhc-CHhHHHHHHHHHHhhcCce-EEEEecCCCCccccccccc Confidence 2233222222233433 2221 1 223344555543 4777777666 68999986 4556644332110 0 Q ss_pred eeeeeecCcee--Eeccc---------------CCc-----------eEEeccCCCCce-------eecCCCeEEEeecC Q lcl|Aclame:pro 151 LAFHHRPQSWF--QLNPE---------------DQN-----------ELRLRDNSPAGE-------ALQPFGWIIHRPRA 195 (526) Q Consensus 151 ~~l~~r~~~~f--~~~~~---------------~~~-----------~l~~~~~~~~g~-------~lp~~k~i~~~~~~ 195 (526) ..|...++... .+++. ++. ...+...++... .+..--++.|.++. T Consensus 139 ~~i~~~~p~~~~~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~N~~ 218 (484) T protein:vir:77 139 PIIRVEPPTNLYAQIDPRTRQVMRAIRAIEDEEGNEVIGATLYLPNNTVIWNREDGQWVQVANVAHNLEMVPVIPIPNRT 218 (484) T ss_pred ceEEEeccceeEEEecCCCCceEEEEEEEEeecCCcEEEEEEEecCeEEEEEecCCceEeeccccCCCCCcceEEecccc Confidence 01222222211 01110 000 001111111110 11112246667778 Q ss_pred CCCccccchhHHHHHHHHH-HHHHHHHHHHHHHHHcCCceEEEecCCCCC-HHHHHHHHHHHHHhhcCeEEEecCCceEE Q lcl|Aclame:pro 196 RSGYVARSGLFRVLAWPYL-FRHYATSDLAEMLEIYGLPIRLGKYPPGTA-DEEKATLLRAVTGLGHAAAGIIPETMAID 273 (526) Q Consensus 196 ~~g~p~g~gLl~~~~~~~~-fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~-~~e~~~l~~al~~~~~~~~~iip~~~~ie 273 (526) ..+.|+|.|-+........ -=...+.+++..++-|+.|.++.+--.... ..+...-... -....+...++|. .+.+ T Consensus 219 ~~~~~~G~s~i~~~v~~L~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~ 296 (484) T protein:vir:77 219 RLSDLYGTTEITPELRSVTDAAARTLMLMQATAELMGVPQRLLFGVKGEELGVDPETGQTL-FDAYLARILAFED-HESK 296 (484) T ss_pred ccCccCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhCCCcchhcccccccchh-hhhhhhhhcccCC-CCce Confidence 8888999987754332222 224566778888999999988765211100 0011110111 1112234444453 3456 Q ss_pred EeecCCCChHHHHHHHHHHHHHHHHHHhchhhhc-ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 274 FQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTS-TTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLV 352 (526) Q Consensus 274 ~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt-~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~ 352 (526) |.+-..++...|...++.+-.+||..---+.-.. ...++..+.-|+. ....-....++.-.+.+...|. ++++.++. T Consensus 297 ~~q~~~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~-~~~~~l~~ka~~k~~~f~~~l~-~~~~l~~~ 374 (484) T protein:vir:77 297 AQQFSAAELRNFVDALDALDRKAAAYTGLPPYYLSFSSENPASAEAIR-SSESRLVKTVERKNKIFGGAWE-QAMRVAYK 374 (484) T ss_pred eEeecCCChHHHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH Confidence 6665455566677777777777765432111110 0011111112222 2222233333444455666664 35555554 Q ss_pred hcCCCCCCc-ccceeEEecCccccCHHHHHHHHHHHHhCCC-cCCHHHHHHHhCCCCCCccch--hcccC-CC-cccccc Q lcl|Aclame:pro 353 LNRPGSPDV-RRAPRLVFDLREQADITSMAQSIPALVNVGL-EIPSAWVYDKLGIPQPAKNEP--VLRSA-AQ-PAILSR 426 (526) Q Consensus 353 ~Nf~~~~~~-~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~-~v~~~~~~e~~Glp~~~~~e~--~~~~~-~~-~~~~~~ 426 (526) +-.+..... ..--.+.|....+.++...++.+.||+..|. .++.+.+.+.+|+-+....+- ..... .. .+...+ T Consensus 375 ~~~~~~~~~~~~~i~v~w~~~~~~s~~~~ad~~~kl~~~g~gi~s~et~~~~l~~~~~~~~e~~~~~~ee~~~~~~~~~~ 454 (484) T protein:vir:77 375 VMNGGDIPPEYYRMESIWRDPSTPTYAAKADAATKLYNNGQGVIPKERARIDMGYSITEREEMRKWDEEEQAQGLGLMGT 454 (484) T ss_pred HhCCCCcccccccceEEecCCCCCCHHHHHHHHHHHHhccCCCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhh Confidence 422221111 1123567777778889999999999999874 378889999999854432210 00000 00 000000 Q ss_pred ---cccccccccccccccccccccchHHHHH Q lcl|Aclame:pro 427 ---QHGQRVAALATIVGPRYGDQQALDKALA 454 (526) Q Consensus 427 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (526) ..+...+........ .+..+....+.. T Consensus 455 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 484 (484) T protein:vir:77 455 MFGTDPSGGGNPDNPETP-EPQPNPAEEAAA 484 (484) T ss_pred hccccccCCCCCCCCCcc-cccCCCccccCC Confidence 000000000000000 000000000000 No 179 >protein:vir:80959 Length: 499 # NCBI annotation: gp3 # Family: family:all:898 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468389;genbank:gi:157324963;genbank:GeneID:5601394 Probab=98.15 E-value=3.5e-06 Score=50.47 Aligned_cols=402 Identities=9% Similarity=0.019 Sum_probs=161.2 Q ss_pred CCeeecCCCCccCccccch--hhhhhhhhhhhhhhhhhhcccCHHHHHH-HHHcccCCCHHHHHHHHHHHHhccHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLRE--PQTSRLAGLAKEFAQHPAKGLTPAKLAR-ILVEAEQGNLQAQAELFMDMEERDAHLFAE 77 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~ 77 (526) |.++ .. -+.|+...... .........-+.|..+- +|-.+ .|-. .....+.+...+.. .-..-... T Consensus 13 ~~~~-~~-~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y-~g~~~-~~~~~~~~~~~~~~~~~~~--------s~n~~~~i 80 (499) T protein:vir:80 13 MRRM-GL-LKSLKDVTDHKKVNANDEDYKYIDMWKRLY-QGNYA-EWHNLNYEHNGNPVNRRQL--------SMNLPKVT 80 (499) T ss_pred HHHh-cc-ccchhhhhcCCCCcCCHHHHHHHHHHHHHh-cCCcc-hhhccccccCCCcccccee--------ecchHHHH Confidence 1110 00 00010000000 00000000000010000 00000 0000 00000111000000 00111223 Q ss_pred HHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeee Q lcl|Aclame:pro 78 MSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHR 156 (526) Q Consensus 78 l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r 156 (526) ..+--.-+++-+-.|... ++...+++.+++.+. .|...+..++ .|..+|-+++-+.|+.++. +. +.+. T Consensus 81 v~~~a~~l~~ep~~i~~~------d~~~~e~l~~~~~~n-~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~-~~---i~~v 149 (499) T protein:vir:80 81 AKYMSKLLFNEKVKINID------DETAEEFVLNVLKTN-GFTKNMERYIEYGEAMGGFVIKVYHDGNKN-VK---VSFA 149 (499) T ss_pred HHHHHHhhhCCcceEeeC------CHHHHHHHHHHHhhc-cHHHHHHHHHHHHhhcCcEEEEEEECCCCc-EE---EEEE Confidence 344445566666666532 245677888888653 4777777766 6999999999888865432 21 1122 Q ss_pred cCceeE---ecc--------------cC-----------------CceE---Eecc--CCCCceee---------cC--- Q lcl|Aclame:pro 157 PQSWFQ---LNP--------------ED-----------------QNEL---RLRD--NSPAGEAL---------QP--- 185 (526) Q Consensus 157 ~~~~f~---~~~--------------~~-----------------~~~l---~~~~--~~~~g~~l---------p~--- 185 (526) ++..|. ++. ++ ...+ +++. ...-|.++ ++ T Consensus 150 ~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~y~~lE~h~~~~~~~~~y~I~n~~~~~~~~~~lG~~v~l~~~~~~~~~~~~ 229 (499) T protein:vir:80 150 TADCMYPLSNDSENVDECLIANSFHKNNKYYKLLEWNEWKGEKEEVYTVTTELYQSDDPNELGGKVSLKLLFNDIEPVVP 229 (499) T ss_pred cCCceEEEEecCCCeEEEEEEEEEeecCeEEEEEEEEEecccceeeEEEEEEEEeccCccccCcccchhhhccCcCCcee Confidence 211110 000 00 0000 0000 00001111 11 Q ss_pred ------CCeEEEee----cCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEE----EecC---CCCCHHHH Q lcl|Aclame:pro 186 ------FGWIIHRP----RARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRL----GKYP---PGTADEEK 248 (526) Q Consensus 186 ------~k~i~~~~----~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~v----gk~~---~~~~~~e~ 248 (526) .-|++++. ....++|+|.|.+..+....---...+..|+.-++.....+.| .+.. .|..... T Consensus 230 ~~~~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~g~~~~~- 308 (499) T protein:vir:80 230 LPSLTRPTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKLGKKKVLVPSSFVKTAVNLDGSTTQY- 308 (499) T ss_pred ecCCCccceEeecCCccccccCCCccCCchHhhHHHHHHHHHHHHHHHHHHHHhcccceecchhhhhccCCCCCCcccC- Confidence 11444433 2246789999999999877766666777777666653333222 1110 1111000 Q ss_pred HHHHHHHHHhhcCeEEEec---C--CceEEEeecCCCChHHHHHHHHHHHHHHHHHH-hchhhhcccccccchhhhhhHH Q lcl|Aclame:pro 249 ATLLRAVTGLGHAAAGIIP---E--TMAIDFQQAAQGSSEPFLAMMRQSEDAISKAV-LGGTLTSTTSQSGGGAFALGQV 322 (526) Q Consensus 249 ~~l~~al~~~~~~~~~iip---~--~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~i-lGqtltt~~~~~~~gS~a~~~v 322 (526) .+. ...-+..++ . +..|+..+.. -..+.|...++.+-++|+..+ +++...+.. +.|...+-++ T Consensus 309 ---~~~----~~~~~~~~~~~~~~~~~~i~~~~~~-ir~e~~~~~l~~~l~~i~~~~g~s~~~fg~~---~~g~~TAtei 377 (499) T protein:vir:80 309 ---FDS----TDEAFFLYQGEQDDNGKAIKDISVE-IRSTEFIESINAMLRIYAMQVGLSAGTFTFD---ENGLKTATEV 377 (499) T ss_pred ---CCc----ccceeeEeeccCCCCcCceeEecCc-CChHHHHHHHHHHHHHHHHhcCCChhhcCCC---cccchhHHHH Confidence 000 000111111 1 1123333221 122445556666666776665 332211211 1121112233 Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCC Q lcl|Aclame:pro 323 HNEVR--HDLLASDARQLAATLSRDLLWPLLVL-----NRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIP 395 (526) Q Consensus 323 h~~v~--~~~~~ad~~~i~~~ln~~li~~l~~~-----Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~ 395 (526) ..+-. ..-+..-.+.+...|. +|++.++.+ ++.+.......+.+.|+..-..|.++.++.+.+++.+|+--. T Consensus 378 ~s~~~~l~~~~~~~~~~~~~~l~-~l~~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~~~~Gi~S~ 456 (499) T protein:vir:80 378 VSEKSETYQTKNSHSQLIEQGIK-EMIVSILEVGKLIKAYDGDTVELDTITVDFDDSIAQDEDTTINRYTTAKNQGMIPL 456 (499) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCH Confidence 22221 1223344556666664 465555532 122222223457788988888999999999999999998555 Q ss_pred HHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccccccc Q lcl|Aclame:pro 396 SAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQA 448 (526) Q Consensus 396 ~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (526) ..++.+.+|+++++-.+++.......+...+ .....+..... . T Consensus 457 et~l~~~~~~~d~ea~~el~~i~~E~~~~~~-~~d~~g~~ge~---------e 499 (499) T protein:vir:80 457 KIALQRAWNITEAEADEWAEMLAKEKQAEIP-NNDMTGIFGEE---------E 499 (499) T ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhhcCCC-CCCccccCCCC---------C Confidence 5666788898765433332211111100000 00000000000 0 No 180 >protein:vir:105461 Length: 470 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529871;genbank:gi:90592611;genbank:GeneID:3974525 Probab=98.12 E-value=4.1e-06 Score=50.11 Aligned_cols=386 Identities=12% Similarity=0.020 Sum_probs=177.5 Q ss_pred cCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCC--HHHH----HHHH-----HHH-----HhccHHHH Q lcl|Aclame:pro 12 IRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGN--LQAQ----AELF-----MDM-----EERDAHLF 75 (526) Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~--~~~~----~~l~-----~~m-----~~~D~~v~ 75 (526) +....+++-.-. .+..+.. ...++... +.--.|. +... .... .+. .-...... T Consensus 1 ~~~~~~~~~i~~-------~~~~~~~---~~~~~~~~-~~Yy~g~~~I~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~k 69 (470) T protein:vir:10 1 MELDALKKLIQN-------TSTSRND---LINNYKQA-VNYYENKTDITTRNNGKAKLNKEGKKDPLRSADNRIPSNFYQ 69 (470) T ss_pred CchHHHHHHHHH-------HHHHHHH---HHHHHHHH-HHHhccccchhccccchhcccccccccccccCCcccccchHH Confidence 222221111000 0000000 00111111 1100110 0000 0000 000 00123344 Q ss_pred HHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeee Q lcl|Aclame:pro 76 AEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFH 154 (526) Q Consensus 76 s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~ 154 (526) -.+.+...-+.+.+..+...++ ...+.+.+++++ +|.+.+..+. ++.-+|.+..-+ |-..+|.+... T Consensus 70 ~Iv~~~~~yl~G~p~~~~~~d~------~~~~~l~~~~~~--~~~~~~~~l~~~~~~~G~a~~~~-y~d~~~~~~~~--- 137 (470) T protein:vir:10 70 LLVDQEAGYVASVFPDIDVGKD------ADNKKIIDVLGD--DRALTLNGLLVDSSNAGRAWLHY-WIDEDGNFRYG--- 137 (470) T ss_pred HHHHhhhhheeccceeeecCch------HHHHHHHHHHhh--hHHHHHHHHHHHHhhcCeeEEEE-EecCCCceEEE--- Confidence 4556666777788877764321 233456666653 4666666665 677889887544 44334443322 Q ss_pred eecCcee--Eeccc------------------CCc------------eEEeccCCCCcee-------------------- Q lcl|Aclame:pro 155 HRPQSWF--QLNPE------------------DQN------------ELRLRDNSPAGEA-------------------- 182 (526) Q Consensus 155 ~r~~~~f--~~~~~------------------~~~------------~l~~~~~~~~g~~-------------------- 182 (526) ..+|... .|+.. +.. ...++..+..... T Consensus 138 ~~~p~~~~~v~d~~~~~~~~a~ir~y~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (470) T protein:vir:10 138 IIQPDQITPIYATTLDNKLLGILRSYKQLDPDSGKYFTVHEYWTDKEAQFFRTNATDSTVIEPYNIITSYDLSAGYETGQ 217 (470) T ss_pred EEcccceEEEEcCCCCCceEEEEEEEEeeecCCceEEEEEEEEcCCcEEEEEeecCcceecccccccccccccccccccc Confidence 2222111 11111 000 0000000000000 Q ss_pred ----ecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHh Q lcl|Aclame:pro 183 ----LQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGL 258 (526) Q Consensus 183 ----lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~ 258 (526) -..+..|-..+- ..|..|.|.+..+....=-=...+++++..++.|+-|+.+.+--.+.+.++ ...++ T Consensus 218 ~~~~~~~~g~vPvv~~--~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lvl~g~~~~~~~~------~~~~~ 289 (470) T protein:vir:10 218 SNTLKHNFGRVPFIEF--SKNKYRLPELNKYKGLIDAYDDIYNGFINDLDDVQTVILVLTNYGGADLHQ------FMNDL 289 (470) T ss_pred ccccccCCCeeeEEEe--ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCcceeeecCCccccch------hhhhh Confidence 001111111111 236789999998777776667889999999999999999987433322221 22344 Q ss_pred hcCeEEEecC-----CceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHH----H Q lcl|Aclame:pro 259 GHAAAGIIPE-----TMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRH----D 329 (526) Q Consensus 259 ~~~~~~iip~-----~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~----~ 329 (526) .....+.++. +..+++++. ..+.+.++..++.+.+.|.+.-.+..++.+.. | . .+.+.-..+. . T Consensus 290 ~~~~~i~~~~~~~~~~~~~~~lt~-~~~~~~~~~~~~~L~~~I~~~s~~p~~~~~~~-g-n----~Sg~Alk~~~~~l~~ 362 (470) T protein:vir:10 290 RKYKSIKINNTGNGDNSGVDKLQI-DIPVEARDDALKITRKNIFLFGQGIDPANFES-S-N----ASGVAIKMLYSHLEL 362 (470) T ss_pred hhcCeEeccCCCCCcCceeEEEee-cCChHHHHHHHHHHHHHHHHHhCCCCCCcccc-c-c----chHHHHHHHHHHHHH Confidence 4555566654 456888874 34456789999999999998876666654321 1 1 2222222222 2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCC-CC Q lcl|Aclame:pro 330 LLASDARQLAATLSRDLLWPLLV-LNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGI-PQ 407 (526) Q Consensus 330 ~~~ad~~~i~~~ln~~li~~l~~-~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Gl-p~ 407 (526) .+..-.+.+...|. ++++.++. +|.... ......+.|....+.|..+.++.+.++. |+ +|.+.+.+.++. .. T Consensus 363 k~~~~~~~~~~~l~-~~~~~i~~~l~~~~~--d~~~i~i~f~~~~p~d~~e~~~~~~~~~--g~-iS~et~l~~~p~v~D 436 (470) T protein:vir:10 363 KAAKTQTYFEHAIN-ELVRAIMRYLNFSDA--DKRHISQHWTRTKVEDSLTKAQIVSTVA--NY-SSKEAVAKANPIVDD 436 (470) T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhcccCc--ccceeeEEeccCCCCCHHHHHHHHHHHh--cc-CcHHHHHHhCCCCCC Confidence 23333344555553 35555544 343221 1234578899999999999999999874 66 899999999874 32 Q ss_pred CCccchhcccCCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 408 PAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQ 447 (526) Q Consensus 408 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (526) +...-+-+........+ .... .....+......+ T Consensus 437 ~~~E~eri~~E~~e~~~---~~~~---~~~~~~~~~dde~ 470 (470) T protein:vir:10 437 WQQELKDLAKDKEENDP---YSNQ---ADELNGKGVNDEQ 470 (470) T ss_pred HHHHHHHHHHHHHHHHH---hhcc---ccccCCCCCCCCC Confidence 22111101100000000 0000 0000000000000 No 181 >protein:vir:99916 Length: 504 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655520;genbank:gi:109392290;genbank:GeneID:4157085 Probab=98.12 E-value=4.3e-06 Score=50.03 Aligned_cols=431 Identities=11% Similarity=0.001 Sum_probs=172.3 Q ss_pred CCeeecC-CCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCC-------CHHHHHHHHHHHHhccH Q lcl|Aclame:pro 1 MAQIVDV-YGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQG-------NLQAQAELFMDMEERDA 72 (526) Q Consensus 1 m~~~~~~-~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g-------~~~~~~~l~~~m~~~D~ 72 (526) |.-|--- .--|.....+..+....+..+.+.+..+-. ...++.+..+. .+. -...+.. +.-.-. T Consensus 1 ~~~~~~~~~~~~~~~~~l~~~e~~~i~~L~~~~~~~~~---r~~~l~~YY~G-~~~i~~~~~~~p~~~~~----~~~v~n 72 (504) T protein:vir:99 1 MTEETTSASKFTFRIPELNDDVVDKVNGLYQQLVDRTP---RNLLRASFYDG-KYAIRQIGNLIPPEYLR----TATVLG 72 (504) T ss_pred CCccCCcccccccccCCCCHHHHHHHHHHHHHHHHHhH---HHHHHHHHHhc-cccchhccccccHHHHH----HhhccC Confidence 4321110 111112222333333333333333322211 11111111110 000 0000000 000000 Q ss_pred HHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEe Q lcl|Aclame:pro 73 HLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPL 151 (526) Q Consensus 73 ~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~ 151 (526) ...-++++....+.--.|.+ ++ ++..+ +.+.+++... .|+.....++ +|+-||.|+ +++|...++.-.+ T Consensus 73 ~~~~iVd~~a~rl~~~Gf~~--~d-~~~~~----~~l~~i~~~N-~ld~~~~~~~~~a~iyG~af-~~v~~~~d~~~~~- 142 (504) T protein:vir:99 73 WSAKAVDTLARRCNLESFVW--PD-GDYGS----IGGPDVWDEN-FFATKANNAMVSSLIHGPAF-LINTEGGAGEPDS- 142 (504) T ss_pred cHHHHHHHHHhhhccceeeC--CC-CChhh----HHHHHHHHhc-ChhhHHHHHHHHHHhhCcee-EEEecCCCCCcee- Confidence 00111111111111113322 22 22222 2244555433 3666555555 788999976 6778654443221 Q ss_pred eeeeecCcee--EecccCCc----------------e---EEecc--------CCCCc-eeecC----CCeEEEeecCCC Q lcl|Aclame:pro 152 AFHHRPQSWF--QLNPEDQN----------------E---LRLRD--------NSPAG-EALQP----FGWIIHRPRARS 197 (526) Q Consensus 152 ~l~~r~~~~f--~~~~~~~~----------------~---l~~~~--------~~~~g-~~lp~----~k~i~~~~~~~~ 197 (526) .|...+|++. .|++..+. . +.+.+ ++... ....+ .-++.+.++... T Consensus 143 ~I~~~sP~~~~~iyD~~~~~~~~a~~~~~~d~~g~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~gvPvV~~~n~~~~ 222 (504) T protein:vir:99 143 LIHVKSAMQATGEWNSRRNAMDSLLSITSRDAEGHPTGIALYEDGVTVTADMDDDGDWHADVRTHKLGVPVEVLPYKPRE 222 (504) T ss_pred EEEEeccceeEEEEeCCCCceeEEEEEEEecCCCeEEEEEEEcCCcEEEEEEcCCceeeeccccCCCCcceEEecccccC Confidence 1223333221 12211110 0 00000 00000 00000 114555666667 Q ss_pred CccccchhH-HHHHHHHHHHHHHHHHHHHHHHHcCCceEEEe--cCCCCCH------HHHHHHHHHHHHhhcCeEEEecC Q lcl|Aclame:pro 198 GYVARSGLF-RVLAWPYLFRHYATSDLAEMLEIYGLPIRLGK--YPPGTAD------EEKATLLRAVTGLGHAAAGIIPE 268 (526) Q Consensus 198 g~p~g~gLl-~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk--~~~~~~~------~e~~~l~~al~~~~~~~~~iip~ 268 (526) +.|+|.+-+ +.+....=-=+..+..-+.-.|-|+.|.++.. .+....+ +-.+.....+-.+..+.=+.++. T Consensus 223 ~~~~G~sei~~~v~~l~Da~~~~~~~~~~~~e~~a~p~r~i~G~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 302 (504) T protein:vir:99 223 DRPLGSSRITRPVMSLQQRALKGCIRMDGHADVYSFPQLILLGADAKNFRNKDGSMKPAWQIALARVFALPDDEDEPDAA 302 (504) T ss_pred ccccCcccchhhHHHHHHHHHHHHHHHHHHHHHhcchhhhhccCCccccccccccccchhhhhhhhhhcCCCcccccccc Confidence 788887743 33333222222334444566788889877754 1211111 11222233344444445555566 Q ss_pred CceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhc-ccccccchhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 269 TMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTS-TTSQSGGGAF-ALGQVHNEVRHDLLASDARQLAATLSRDL 346 (526) Q Consensus 269 ~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt-~~~~~~~gS~-a~~~vh~~v~~~~~~ad~~~i~~~ln~~l 346 (526) +...+|-+-..++...|...++.+-.+||..-.-+.-.. ..++.+.+|. |+ .....-....++.-.+.+...+. ++ T Consensus 303 ~~~~~~~q~~~~~l~~~~~~l~~~i~~~a~~t~~P~~~lG~~~~~n~sSa~Ai-~~~~~~L~~ka~~k~~~f~~~l~-~~ 380 (504) T protein:vir:99 303 RARADVKQFPASSPQPHIEMLEQIAMMFSGETSIPVESLGFSNRANPTSADAY-IASREDLIAEAEGATDDWSPAFR-RS 380 (504) T ss_pred CccceeeecCCCChHHHHHHHHHHHHHHHhhhCCCHHHhcccccccccHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HH Confidence 666777665556667788788878888875432211000 0111112232 33 23333344445556677777775 45 Q ss_pred HHHHHHh--cCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCc--CCHHHHHHHhCCCCCCccc---hhcc--- Q lcl|Aclame:pro 347 LWPLLVL--NRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLE--IPSAWVYDKLGIPQPAKNE---PVLR--- 416 (526) Q Consensus 347 i~~l~~~--Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~--v~~~~~~e~~Glp~~~~~e---~~~~--- 416 (526) ++..+.+ |++.......-..+.|......++.+.|+++.||+..|.. +..+.+.+.+|+.+.+-.. +... T Consensus 381 ~rla~~~~~~~~~~~~~~~~~~v~w~d~~~~s~a~~aDa~~Kl~~ag~~l~~~~~~l~~~lg~~~~ei~r~~~e~~~~~~ 460 (504) T protein:vir:99 381 MIRALAIKNGLDRIPPEWKTIDSKFRSPLYLSKAAQADAGAKMLGAGPEWLKETEVGLELLGLTPQQAKRALAERRRASS 460 (504) T ss_pred HHHHHHHhcCCCccccccccceeEecCCCccCHHHHHHHHHHHHhhccccccchHHHHhhcCCCHHHHHHHHHHHHHHhh Confidence 5555444 3332222122345677778888899999999999998853 4567788999997543211 0000 Q ss_pred --------cCCCccccccccccccccc-ccccccccccccchHH Q lcl|Aclame:pro 417 --------SAAQPAILSRQHGQRVAAL-ATIVGPRYGDQQALDK 451 (526) Q Consensus 417 --------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 451 (526) ...+.+......+..+... +...+.....+...+- T Consensus 461 ~~~~~~l~~~~~~~~~~~~~~~~~~~e~a~~~~~~~~~~p~~~~ 504 (504) T protein:vir:99 461 VSIIEALNRRQQEAATAGEDQDQGAGEPPANEPPAALGRPTLVG 504 (504) T ss_pred HHHHHHHhcccCCCCCCCCCCCcCCCCCCCCCCCccCCCcccCC Confidence 0000000000000000000 0000001111111111 No 182 >protein:vir:104082 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655593;genbank:gi:109392464;genbank:GeneID:4156950 Probab=98.11 E-value=4.4e-06 Score=49.96 Aligned_cols=417 Identities=12% Similarity=0.004 Sum_probs=164.2 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHH----HHHHHHHHhccHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQ----AELFMDMEERDAHLFA 76 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~----~~l~~~m~~~D~~v~s 76 (526) |+ |+ |..-.........+..+.+.+..+..+ ..++.+..+.- . .+... -+-+..+...-....- T Consensus 1 ~~------~~-i~~~~~~~~~~~~~~~l~~~~~~~~~r---~~~~~~Yy~G~-~-~i~~~~~~~~~~~~~~~~~~n~~~~ 68 (485) T protein:vir:10 1 MT------AP-LPGQEEIEDPAIARDEMVSAFEDSTQN---LKTNTSYYEAE-R-RPEAIGVTVPIQMQSLLAHVGYPRL 68 (485) T ss_pred CC------CC-CCCCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHhcC-C-cchhcCCCCChhhhhhhhhcCcHHH Confidence 33 22 111100001111111222222211111 11111111100 0 00000 0000000000111122 Q ss_pred HHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecC--------Ce Q lcl|Aclame:pro 77 EMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQG--------RE 147 (526) Q Consensus 77 ~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~--------g~ 147 (526) ++++....+..-.|. .++++ ..+ +.+.+++... .|+.....+. +|+-||.| ++++|.-.+ +. T Consensus 69 ivd~~~~~l~~~g~~--~~~~~-~~~----~~~~~i~~~N-~~d~~~~~~~~~a~i~G~a-y~~v~~~e~~~~~~~~~~~ 139 (485) T protein:vir:10 69 YVDSIAERQAVEGFR--FGDAD-EAD----EELWQWWQAN-NLDIEAPLGYTDAYVHGRS-YITISRPDPQIDLGWDPNT 139 (485) T ss_pred HHHHHHhhhccccee--cCCCc-hhH----HHHHHHHHhc-CHhHHHHHHHHHHhhcCce-EEEEeeCCcccccccCCCe Confidence 222222222222332 23322 222 3345555443 4777776655 68889987 445564221 11 Q ss_pred eEEeeeeeecCcee--EecccCCc--------------------------eEEeccCCCCc-------eeecCCCeEEEe Q lcl|Aclame:pro 148 WMPLAFHHRPQSWF--QLNPEDQN--------------------------ELRLRDNSPAG-------EALQPFGWIIHR 192 (526) Q Consensus 148 ~~~~~l~~r~~~~f--~~~~~~~~--------------------------~l~~~~~~~~g-------~~lp~~k~i~~~ 192 (526) .+ +...+|+.. .+++..+. ...+...+... ..+...-++.|. T Consensus 140 ~~---i~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~ 216 (485) T protein:vir:10 140 PI---IRVEPPTRMYAEIDPRIGRVSKAIRVAYDAEGNEIQAATLYTPNDIFGWYRVENEWQEWFNNPHGLGVVPVVPIP 216 (485) T ss_pred eE---EEEEccceeEEEEcCCCCceeEEEEEEEeeCCCeEEEEEEEeCCeEEEEEEcCCceEEeccccCCCCcccEEEec Confidence 11 222222211 11111110 01111111110 011222345667 Q ss_pred ecCCCCccccchhHHH-HHHHHHHHHHHHHHHHHHHHHcCCceEEEec--CCCCC-H-HHHHHHHHHHHHhhcCeEEEec Q lcl|Aclame:pro 193 PRARSGYVARSGLFRV-LAWPYLFRHYATSDLAEMLEIYGLPIRLGKY--PPGTA-D-EEKATLLRAVTGLGHAAAGIIP 267 (526) Q Consensus 193 ~~~~~g~p~g~gLl~~-~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~--~~~~~-~-~e~~~l~~al~~~~~~~~~iip 267 (526) ++.+.+.++|.|-+.. +....=--...+...+...+.|..|.++.+- +.... + ...... .....+....+ T Consensus 217 n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~----~~~~~~~i~~~- 291 (485) T protein:vir:10 217 NRTRLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVDPETGQTL----FDAYLARILAF- 291 (485) T ss_pred cccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHhcCCcccccccccccchh----hhhcccceecc- Confidence 7777788899886654 3222212244566777788999999887552 11110 0 111111 12233334444 Q ss_pred CCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhch--hhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 268 ETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGG--TLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRD 345 (526) Q Consensus 268 ~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGq--tltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~ 345 (526) .+.+.+|.+-...+...|.+.++-+-.+|+..---+ .+.. ...+..+.-|+. ....-....++.-.+.+...|++ T Consensus 292 ~~~d~k~~q~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~fg~-~~~n~~Sg~Al~-~~~~~l~~k~~~k~~~f~~~l~~- 368 (485) T protein:vir:10 292 EDAEGKIQQFSAAELANFTNALDQIAKQVAAYTGLPPQYLST-AADNPASAEAIR-AAESRLIKKVERKNSIFGGAWEE- 368 (485) T ss_pred CCCCceEEeecccchHHHHHHHHHHHHHHhcccCCCHHHhcc-ccCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH- Confidence 445667776555556667777776666666542111 1111 011111222332 22222333344455566667743 Q ss_pred HHHHHHHhcCCCCCCcc-cceeEEecCccccCHHHHHHHHHHHHhCCC-cCCHHHHHHHhCCCCCCccch--hcccC-CC Q lcl|Aclame:pro 346 LLWPLLVLNRPGSPDVR-RAPRLVFDLREQADITSMAQSIPALVNVGL-EIPSAWVYDKLGIPQPAKNEP--VLRSA-AQ 420 (526) Q Consensus 346 li~~l~~~Nf~~~~~~~-~~p~~~~~~~e~edl~~~a~~~~~l~~~G~-~v~~~~~~e~~Glp~~~~~e~--~~~~~-~~ 420 (526) +++.++.+..+...... ..-.++|....+.++.+.++++.+|+..|. .++.+.+.+.+|+.+....+- ..... .. T Consensus 369 ~~~l~~~~~~~~~~~~~~~~i~v~w~~~~~~~~~~~ada~~kl~~ag~~~~s~et~~~~lg~~~~~~~~~~~~~ee~~~~ 448 (485) T protein:vir:10 369 AMRLAYRMMKGGDVPPDMLRMETVWRDPSTPTYAAKADAASKLYNGGTGVIPRERARKDMGYSIAEREEMRRWDEEEAAM 448 (485) T ss_pred HHHHHHHHhCCCCCcccceeeeEEecCCCCCCHHHHHHHHHHHHhccccCCCHHHHHHhCCCCHhHHHHHHHHHHHHHHH Confidence 55555554322221111 123467777888999999999999999873 478899999999965432110 00000 00 Q ss_pred --------cccccccccccccccccccccccccccch Q lcl|Aclame:pro 421 --------PAILSRQHGQRVAALATIVGPRYGDQQAL 449 (526) Q Consensus 421 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (526) ..+.+...+......+..++......+.. T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (485) T protein:vir:10 449 GLGLIGTMVDPNPTVPGSPSPAPAPKPAALESGGDAA 485 (485) T ss_pred HHHHHHHhhccCCCCCCCCCccccccCcCCCCCCCCC Confidence 00000000000000000000001111101 No 183 >protein:vir:38 Length: 496 # NCBI annotation: putative portal protein # Family: family:all:898 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463464;swissprot:trembl:q9t1c0;genbank:gi:16798786;uniprot:Q9T1C0;genbank:GeneID:922383 Probab=98.04 E-value=6.1e-06 Score=49.17 Aligned_cols=387 Identities=10% Similarity=0.047 Sum_probs=156.4 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCC-------CHHHHHHHHHH----HHh Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQG-------NLQAQAELFMD----MEE 69 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g-------~~~~~~~l~~~----m~~ 69 (526) |- -.+.+-++.+..+......+..++...+-. .+..+..+|+- +.. T Consensus 1 m~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~yy~g~~~~~~~ 57 (496) T protein:vir:38 1 MI-----------------------NQIIAGVKGVMRRMGLLKALKDVKDHKKVNANDEDYKYIDMWKRLYQGHYAEWHN 57 (496) T ss_pred Ch-----------------------hHHHHHHHHHHHHhccchhhHHHHhcCCCcCCHHHHHHHHHHHHHhcCCCchhhc Confidence 11 011111111111111111111111111100 00111111110 000 Q ss_pred ----------cc-----HHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-Hhhhhc Q lcl|Aclame:pro 70 ----------RD-----AHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHG 133 (526) Q Consensus 70 ----------~D-----~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G 133 (526) .+ .--.-+..+-..-+++-+-.|... +++..+++.+++... .|.+.+..++ .|..+| T Consensus 58 ~~~~~~~~~~~~~~~~~n~~k~i~~~~a~~l~~~p~~i~~~------d~~~~e~l~~~~~~n-~f~~~~~~~~~~a~~~G 130 (496) T protein:vir:38 58 LNYEHNGNPVNRRQLSMNLPKVTAKYMSKLLFNEKVKINID------DKAAEEFVLNVLKTN-GFTKNMERYIEYGEAMG 130 (496) T ss_pred chhccCCCccccceeecchHHHHHHHHhhhhhCCcceEeeC------ChHHHHHHHHHHhcc-CHHHHHHHHHHHHhhhC Confidence 00 011113333344556666666531 245667888888753 4777777666 699999 Q ss_pred ceeeeEEEeecCCeeEEeeeeeecCceeEe---c--------------ccC--------------CceEE---ecc--CC Q lcl|Aclame:pro 134 YSCIELEWALQGREWMPLAFHHRPQSWFQL---N--------------PED--------------QNELR---LRD--NS 177 (526) Q Consensus 134 ~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~---~--------------~~~--------------~~~l~---~~~--~~ 177 (526) -+++=+.|+.+++ .. +..+++..|.+ + .++ ...+. ++. .. T Consensus 131 ~~~~~~~~D~~~~-~~---i~~v~~~~~~P~~~~~~~~~~~~f~~~~~~~~~~y~~le~h~~~~~~~~I~~~~y~~~~~~ 206 (496) T protein:vir:38 131 GFVIKVYHDGNKN-VK---VSFATADCMYPLSNDSENVDECVIANSFHKNNKYYTLLEWNEWQGDVYTVTTELYQSDDPN 206 (496) T ss_pred cEEEEEEEcCCCc-EE---EEEEcccceEEEEecCCcEEEEEEEEEEEeCCeEEEEEEEEEEeCceEEEEEEEEecCCcc Confidence 8877776654433 22 22222221110 0 000 00000 110 00 Q ss_pred CCceee---------cC---------CCeEEEe----ecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceE Q lcl|Aclame:pro 178 PAGEAL---------QP---------FGWIIHR----PRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIR 235 (526) Q Consensus 178 ~~g~~l---------p~---------~k~i~~~----~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~ 235 (526) .-|.++ ++ .-|++++ .....++|+|.|.+..+....-.-...+..|+.-++. |.+.. T Consensus 207 ~~g~~v~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~N~~~~~~p~G~Sd~~~~~~lid~ld~~~s~~~~~~~~-~~~~i 285 (496) T protein:vir:38 207 ELGTKVSLTLLFDDIEPVVPLPDFTRPTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKL-GKKKV 285 (496) T ss_pred ccCccccccccccccccceeecCCCcceEEEecCCcccccccCCcCCCchHhhHHHHHHHHHHHHHHHHHHHhh-cccce Confidence 001111 11 1122222 2335678999999999987665555566666665554 44332 Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhcC---------e-EEEec---C--CceEEEeecCCCChHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 236 LGKYPPGTADEEKATLLRAVTGLGHA---------A-AGIIP---E--TMAIDFQQAAQGSSEPFLAMMRQSEDAISKAV 300 (526) Q Consensus 236 vgk~~~~~~~~e~~~l~~al~~~~~~---------~-~~iip---~--~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~i 300 (526) .+ |.. ++..+.+.... . ..++. . +..|+.... .-..+.|...++.+-++|+..+ T Consensus 286 ~v--~~~--------~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~i~~e~~~~~l~~~l~~i~~~~ 354 (496) T protein:vir:38 286 LV--PSS--------FVKTAVNLDGSTTQYFDSTDEAFFLYQGDQDDNGKAIKDISV-EIRSTEFIESINAMLRIYAMQV 354 (496) T ss_pred ec--chH--------HhhccCCCCCccccCCCCccceEEEeecCCCcccccceeecc-ccCHHHHHHHHHHHHHHHHHhh Confidence 22 100 00000000000 0 01111 1 112333322 1122446666666666776554 Q ss_pred h-chhhhcccccccchhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCCCCcccceeEEecCc Q lcl|Aclame:pro 301 L-GGTLTSTTSQSGGGAFALGQVHNEV--RHDLLASDARQLAATLSRDLLWPLLVL-----NRPGSPDVRRAPRLVFDLR 372 (526) Q Consensus 301 l-Gqtltt~~~~~~~gS~a~~~vh~~v--~~~~~~ad~~~i~~~ln~~li~~l~~~-----Nf~~~~~~~~~p~~~~~~~ 372 (526) . ++...+.. ++|...+.++.... ....+..-.+.+...|. ++++.++.+ .+.+......-+.+.|... T Consensus 355 g~~~~~f~~~---~~g~~tAtei~~~~~~l~~~~~~~~~~~~~~l~-~l~~~il~~~~~~~~~~g~~~~~~~i~v~f~d~ 430 (496) T protein:vir:38 355 GLSAGTFTFD---ENGLKTATEVVSEKSETYQTKNSHSQLIEQGIK-EMIVSILEVGKFIEAYSGEVVELDTITVDFDDS 430 (496) T ss_pred CCChhhcCCC---ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCCCCccceEEEeCCC Confidence 2 22111111 11211122333222 22223334555666664 466655533 1122112223468889888 Q ss_pred cccCHHHHHHHHHHHHhCCCcCCHH-HHHHHhCCCCCCccchhcccCCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 373 EQADITSMAQSIPALVNVGLEIPSA-WVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQ 447 (526) Q Consensus 373 e~edl~~~a~~~~~l~~~G~~v~~~-~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (526) -+.|.++.++.+.+++.+|+ +|.+ ++...+|+++++-.+++.......+... +....+...+. .+ T Consensus 431 i~~d~~~~~~~~~~~~~~Gi-iS~et~l~~~~~~~d~ea~~el~ri~~E~~~~~--~~~d~~~~~~~-------~e 496 (496) T protein:vir:38 431 IAQDEDTTINRYTNAKNQGM-IPLKIALQRAWNITEAEADEWAEMLAKEKQAEM--PNNDMNGIFGE-------EE 496 (496) T ss_pred CCCCHHHHHHHHHHHHhcCC-CCHHHHHHhcCCCChHHHHHHHHHHHHhhhccC--ccccccCCCCC-------CC Confidence 89999999999999999998 5554 5567778865443333211111000000 00000000000 00 No 184 >protein:vir:78083 Length: 537 # NCBI annotation: gp3 # Family: family:all:125 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468787;genbank:gi:157325368;genbank:GeneID:5601845 Probab=98.04 E-value=6.1e-06 Score=49.16 Aligned_cols=415 Identities=9% Similarity=-0.034 Sum_probs=181.0 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHH---HHHHHH-------HH---- Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQ---AQAELF-------MD---- 66 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~---~~~~l~-------~~---- 66 (526) |.- .-|..+.-..-.-+...+..|-...- ..+ ..-++.--.|.-. +....+ ++ T Consensus 1 ~~~-----------~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~-~~~~~~YY~g~h~Il~r~~~~~~~~~~~~~d~~~~ 67 (537) T protein:vir:78 1 MTS-----------PLLNKPIDQLGGLLNTEITTYMASNH-IKW-AHIGENYYNQENDIEKSRIFYMNDKGQLREDNYAS 67 (537) T ss_pred CCc-----------ccccccHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHhcccchhhhccccccccccccccccccc Confidence 221 11221111000011111111110000 001 0111111112100 000000 00 Q ss_pred -HHhccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeec Q lcl|Aclame:pro 67 -MEERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQ 144 (526) Q Consensus 67 -m~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~ 144 (526) -.-......-.+.+...-+++.+-.+...+ ...++..+.++.++.+ .|.+...++. ++.-||.+ .+++|... T Consensus 68 nnki~~nf~k~Ivd~~~~yl~G~Pv~~~~~d---~~~~e~~~~l~~~~~~--~~~~~~~el~~~~s~~G~a-y~~~y~de 141 (537) T protein:vir:78 68 NVKISHGFFTELVDQLAQYLLSNGVEVKVKD---EDNTQLDEILQEYFDE--DFQATIDTLVTNASKKGFE-GIFARTTS 141 (537) T ss_pred ccccccchHHHHHHHHhhhhcccCceeecCc---chhHHHHHHHHHHhhc--cHHHHHHHHHHHHhhcCee-EEEeeecC Confidence 000134455566677777889888887533 2344566777776642 4666665554 68889986 56667555 Q ss_pred CCeeEEeeeeeecCcee--EecccCCce--EE------------------------------eccCCCC----------- Q lcl|Aclame:pro 145 GREWMPLAFHHRPQSWF--QLNPEDQNE--LR------------------------------LRDNSPA----------- 179 (526) Q Consensus 145 ~g~~~~~~l~~r~~~~f--~~~~~~~~~--l~------------------------------~~~~~~~----------- 179 (526) +|.+....+ +|... .|+...... ++ +...+.. T Consensus 142 ~~~~~~~~i---~p~~~~pv~d~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~evyt~~~i~~y~~~~~~~~~~~~~~~~~ 218 (537) T protein:vir:78 142 EGKLKFQTV---DGLTLIPVFDDYGVLKMIIRWYSEIRYSTKQQSTETIWHADVWNEEAVCYYIQDDEGVSTTYKLDEAY 218 (537) T ss_pred CCceEEEEE---ccceeEEEEcCCCCceeEEEEEeeeeccccccCcceEEEEEEEcCCcEEEEEecCCcccccccccccc Confidence 555543322 22211 122111110 00 0000000 Q ss_pred -ceee------------------------cCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCce Q lcl|Aclame:pro 180 -GEAL------------------------QPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPI 234 (526) Q Consensus 180 -g~~l------------------------p~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~ 234 (526) +.++ .+++.|-+.. -..|..|.|.+..+-...=-=...+++.+..++.|.-|+ T Consensus 219 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~--f~nn~~~~sd~e~v~~LiDayd~~~S~~an~~~~~~~~i 296 (537) T protein:vir:78 219 NPNPAPHVLAIEESTDADFEDTDGYQVLGRSYSKFPFQL--LYNNKDGMSDVKRVKSIIDDYDVMNCFLSNNLQDFSEAI 296 (537) T ss_pred cccccceeeeccccccccccccccccccccCCcceeEEE--eccCccCCCchhhhHHHHHHHHHHHHhhhhHHHHhcCce Confidence 0000 0111111111 124667889998887777777778899999999999999 Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhhcCeEEEec-CCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhccccccc Q lcl|Aclame:pro 235 RLGKYPPGTADEEKATLLRAVTGLGHAAAGIIP-ETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSG 313 (526) Q Consensus 235 ~vgk~~~~~~~~e~~~l~~al~~~~~~~~~iip-~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~ 313 (526) .+.+--.+....+ ...++....++-++ ++..++++.. ....+.++.+++++.+.|-+.-.+... .+. + T Consensus 297 lvi~g~~~~~~~~------~~~~l~~~~~i~v~~d~~~v~~l~~-~~~~~~~e~~ld~L~~~I~~~s~~~~~-~~~---~ 365 (537) T protein:vir:78 297 YVVKGFSGDSTDK------LRQNIKAKKMIGVNGDNAGMEIQTV-SIPYEARKAKMDIDVENIYRSGMGFNS-TAV---G 365 (537) T ss_pred eeeecCCCccchh------HHHHHhhcCceeecCCCCceeEEEe-cCCHHHHHHHHHHHHHHHHHhcCCCCC-ccc---c Confidence 8887433332222 12233444444444 5678999964 345567888999999998765333322 221 1 Q ss_pred chhhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh-cCCCC-CCcccceeEEecCccccCHHHHHHHHHHH Q lcl|Aclame:pro 314 GGAFALGQVHNEVRHDL----LASDARQLAATLSRDLLWPLLVL-NRPGS-PDVRRAPRLVFDLREQADITSMAQSIPAL 387 (526) Q Consensus 314 ~gS~a~~~vh~~v~~~~----~~ad~~~i~~~ln~~li~~l~~~-Nf~~~-~~~~~~p~~~~~~~e~edl~~~a~~~~~l 387 (526) +|.+ +.+.-..+... +..-.+.+...|.+ +++.++.+ +..+. ........+.|...-+.|.++.++.+.+| T Consensus 366 -~gn~-SGvAlk~~~~~l~~ka~~ke~~f~~~l~~-~~~~i~~~~~~~~~~~~d~~~i~i~f~~~~P~n~~e~a~~~~~l 442 (537) T protein:vir:78 366 -DGNV-TNVVIKSRYTLLAMKARKMETSLRKVLRW-CADMVVSDIALRGLGEYDSNDICFEIEPHVLANELDIATTRKTE 442 (537) T ss_pred -ccCC-cHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCcccccceeeEEeccCCCCCHHHHHHHHHHH Confidence 1222 22333332222 22233444444533 33333332 22111 11123467889999999999999999999 Q ss_pred HhCCCcCCHHHHHHHhCCCCCCccc-----------------------hhcccCCCccc------ccccccccccccccc Q lcl|Aclame:pro 388 VNVGLEIPSAWVYDKLGIPQPAKNE-----------------------PVLRSAAQPAI------LSRQHGQRVAALATI 438 (526) Q Consensus 388 ~~~G~~v~~~~~~e~~Glp~~~~~e-----------------------~~~~~~~~~~~------~~~~~~~~~~~~~~~ 438 (526) +..|+ +|.+.+.+.++.-...+.+ ......+...+ ....+.......+.+ T Consensus 443 ~~~gi-iS~eT~l~~~p~vdd~e~ek~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 521 (537) T protein:vir:78 443 AETEA-LKIGNIMTVAPRIGDDETLKLIAEELDLDYNELKDALAEQDAQSLDVSPDVQAMLDGLPVNANQPPVDPNQPVA 521 (537) T ss_pred HhcCc-chHHHHHHhCCCCCCHHHHHHHHHHHHhhhhhhhhhhhhhcccccCcCcchhhhcCCCCCCCCCCCCCccCCCC Confidence 98887 7777777766542211000 00000000000 000000000000000 Q ss_pred cccccccccchHHHHH Q lcl|Aclame:pro 439 VGPRYGDQQALDKALA 454 (526) Q Consensus 439 ~~~~~~~~~~~~~~~~ 454 (526) .+.-.++.++.+-... T Consensus 522 ~~~~~~~~~~~~~~~~ 537 (537) T protein:vir:78 522 DPNVVPPTDPNAVPQT 537 (537) T ss_pred CCCCCCCCCCccCCCC Confidence 0000011111000000 No 185 >protein:vir:102330 Length: 451 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529555;genbank:gi:90592641;genbank:GeneID:3974462 Probab=97.99 E-value=7.7e-06 Score=48.61 Aligned_cols=366 Identities=9% Similarity=0.005 Sum_probs=180.4 Q ss_pred cCHHHHHHHHHcccCCCHHHHHHHHHHHHh--------------------------ccHHHHHHHHHHHHHHhcCCceEe Q lcl|Aclame:pro 40 LTPAKLARILVEAEQGNLQAQAELFMDMEE--------------------------RDAHLFAEMSKRKRAILGLDWAVE 93 (526) Q Consensus 40 l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~--------------------------~D~~v~s~l~~Rk~av~~~~w~v~ 93 (526) ||++.+...+..... ...++..+.+...- ......-.+.+...-+.+.+..+. T Consensus 1 l~~~~i~~~i~~~~~-~~~r~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~yl~G~p~~~~ 79 (451) T protein:vir:10 1 MELEKIRAIISADAA-RRQEILQAKSYYYNKNDILKKGVVVQNRDENPLRNADNRISHNFHEILVDEKASYMFTYPVLFD 79 (451) T ss_pred CCHHHHHHHHHHHHH-HHHHHHHHHHHhcccCccccccccccccccccccccccccccchHHHHHHhhhhheecccceee Confidence 455544444433221 12222222221110 023344455555666667776665 Q ss_pred cCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecC--------CeeEEeeeeeecCcee-E- Q lcl|Aclame:pro 94 PPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQG--------REWMPLAFHHRPQSWF-Q- 162 (526) Q Consensus 94 ~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~--------g~~~~~~l~~r~~~~f-~- 162 (526) ..+ ++...++++.++.+ +|+.....+. ++.-||.+.. ++|...+ |.+. +...+|+.+ . T Consensus 80 ~~~-----~~~~~~~~~~~~~n--~~~~~~~~~~~~~~~~G~a~~-~~y~de~~~~~~~~~~~~~---~~~i~p~~~~~v 148 (451) T protein:vir:10 80 IDN-----NKELNEKVTDVLGN--EFTRKAKNLAIEASNCGSAWL-HYWIDEEYSGEQVTNQTFK---YGVVNTEEIIPI 148 (451) T ss_pred cCC-----cHHHHHHHHHHhcc--CHHHHHHHHHHHHhhcCeEEE-EEeecCCccccccccccee---EEEEcccceEEE Confidence 322 23445667776653 5777777765 6888997764 4443221 2222 222222211 1 Q ss_pred ecccC-Cc---------------------------------eEEecc--CCCCce-----ee-cCCCeEEEeecCCCCcc Q lcl|Aclame:pro 163 LNPED-QN---------------------------------ELRLRD--NSPAGE-----AL-QPFGWIIHRPRARSGYV 200 (526) Q Consensus 163 ~~~~~-~~---------------------------------~l~~~~--~~~~g~-----~l-p~~k~i~~~~~~~~g~p 200 (526) |+... +. ...++. .+..+. .. .+++.+-+.+- ..|. T Consensus 149 ydd~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~--~nn~ 226 (451) T protein:vir:10 149 YRNGIERELEAVIRYYIQLEDVKGQIQKQAYTYVEFWTDKILDKYKFFGVSCCGSQIEHITVQHRFNSVPFVEF--SNNI 226 (451) T ss_pred EcCCCCCceEEEEEEEEeeecccccccceEEEEEEEEeCCeEEEEEecccCccccccccccccCCCCeeeEEEe--ccCC Confidence 11100 00 000000 000000 00 11111111111 2466 Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHhhcCeEEEecC-----CceEEEe Q lcl|Aclame:pro 201 ARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGHAAAGIIPE-----TMAIDFQ 275 (526) Q Consensus 201 ~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~~~~~iip~-----~~~ie~~ 275 (526) .|.|.+..+....=--...++..+..++.|.-|+++.+--.+...+ +.+.++.....++++. +..++++ T Consensus 227 ~~~~d~e~v~~liDa~~~~~S~~~~~~~~~~~~~l~~~g~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~l 300 (451) T protein:vir:10 227 KKQSDLSKYKKILDLYDRVMSGFANDLEDIQQIIYILENFGGEDTS------EFLKELKRYKTIKTETDSEGDSGGLKTM 300 (451) T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCcccch------hhHHHHhhCCeEEecCcCCccCCcceEE Confidence 7889998877666666678899999999999999988732222111 1223455556666653 4568888 Q ss_pred ecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 276 QAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNR 355 (526) Q Consensus 276 ~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf 355 (526) +.. .....++..++++.+.|.+.-.++.++.+.. |+ .|...=+....-....+..-.+.+...+. ++++.++.+.. T Consensus 301 ~~~-~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~-gn-~Sg~Alk~~~~~l~~k~~~k~~~f~~~l~-~~~~li~~~~~ 376 (451) T protein:vir:10 301 QIE-IPTEARKIILEILKKQIYESGQGLQQDTENF-GN-ASGVALKFFYRKLELKSGLLETEFRTSFD-KLIKAILYFLG 376 (451) T ss_pred eec-CCHHHHHHHHHHHHHHHHHHhCccccccccc-cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhC Confidence 643 4556789999999999999876665544321 21 22211111111122233344455556663 45666665432 Q ss_pred CCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCC-CCccchhcccCCCcccccccccccccc Q lcl|Aclame:pro 356 PGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQ-PAKNEPVLRSAAQPAILSRQHGQRVAA 434 (526) Q Consensus 356 ~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~-~~~~e~~~~~~~~~~~~~~~~~~~~~~ 434 (526) . ... ....+.|....+.|..+.++.+.+++ |+ +|.+.+.+.++.-. +.+.......... ..... .. .. T Consensus 377 ~--~d~-~~i~i~f~~~~p~n~~e~~~~~~kl~--g~-iS~et~~~~~p~v~d~~~e~~~~~ee~~-~~~~~-~~---~~ 445 (451) T protein:vir:10 377 V--TDY-KKIQQTYTRNMMSNDLEDADIATKSV--GI-IPTKIILRHHPWVDDVEEAEKLYLEEKK-IQASK-VS---DD 445 (451) T ss_pred C--CCc-cceeEEecCCCCCCHHHHHHHHHHHh--cc-CchHHHHHhCCCCCCHHHHHHHHHHHHH-HHHHH-HH---hh Confidence 1 111 23467888999999999999999986 66 99999999887632 2211111100000 00000 00 00 Q ss_pred cccccccccccccchHH Q lcl|Aclame:pro 435 LATIVGPRYGDQQALDK 451 (526) Q Consensus 435 ~~~~~~~~~~~~~~~~~ 451 (526) ... +.+ T Consensus 446 ~~~-----------~~~ 451 (451) T protein:vir:10 446 YNN-----------FTE 451 (451) T ss_pred cCC-----------CCC Confidence 000 000 No 186 >protein:vir:96839 Length: 474 # NCBI annotation: ORF008 # Family: family:all:125 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240152;genbank:gi:66395815;genbank:GeneID:5133180 Probab=97.99 E-value=8e-06 Score=48.52 Aligned_cols=408 Identities=11% Similarity=0.019 Sum_probs=186.9 Q ss_pred CCeeecCCCCccCccccc--hhhhhhh-hhhhhhhhhhhhcccCHHHHHHHHHcccCCC--HH-HHHHHHH----HHH-- Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLR--EPQTSRL-AGLAKEFAQHPAKGLTPAKLARILVEAEQGN--LQ-AQAELFM----DME-- 68 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~--~~-~~~~l~~----~m~-- 68 (526) |..|-=+...+.....+. .+..... --+.+-+..|..+ ..++....+ --.|. +. +...... +.- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~---~~~~~~~~~-Yy~g~~~i~~~~~~~~~~~~~~~~~~ 76 (474) T protein:vir:96 1 MIVIFWPNEKPYHERVVEQIKPKYETQEEMIIRLINDHKPK---IDDITVGER-YYNHDPDVLRLAPKLDNKGEIDPLKP 76 (474) T ss_pred CeeeccCCCchhhhhHHHHhhhccCChHHHHHHHHHHHHHH---HHHHHHHHH-HhccCCcchhccchhccccccccccc Confidence 887633333333222211 1111111 1122223333211 122222211 11111 10 0000000 000 Q ss_pred ---hccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeec Q lcl|Aclame:pro 69 ---ERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQ 144 (526) Q Consensus 69 ---~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~ 144 (526) -.-+...-.+.+...-+.+.+..+...+ +...+.+.+++.+ +|.+....+. ++.-+|.+. +++|... T Consensus 77 ~~ki~~n~~~~Ivd~~~~~l~g~p~~~~~~d------~~~~~~l~~~~~n--~~~~~~~~~~~~~~~~G~~~-~~~y~d~ 147 (474) T protein:vir:96 77 DWRMFTNYHQNLVDQKVAYAVANPVTFSSDD------DKSLKTIQEVLNH--KWDDKLVDILTAASNKGIEW-LQPYIDE 147 (474) T ss_pred chhcccchHHHHHHhhhhhhcccCceeecCc------hHHHHHHHHHHhc--CHHHHHHHHHHHHHhcCeeE-EEEEecC Confidence 0123444556666677778887776422 2344566777654 4565666554 688899865 5666545 Q ss_pred CCeeEEeeeeeecCceeE--ecccC-Cce---EEe-ccCCCCcee----------------------------------- Q lcl|Aclame:pro 145 GREWMPLAFHHRPQSWFQ--LNPED-QNE---LRL-RDNSPAGEA----------------------------------- 182 (526) Q Consensus 145 ~g~~~~~~l~~r~~~~f~--~~~~~-~~~---l~~-~~~~~~g~~----------------------------------- 182 (526) +|.+.+. ..+|.... |+... +.. ++. ...+..... T Consensus 148 ~~~~~i~---~~~p~~~~~v~d~~~~~~~~~~vr~~~~~~~~~~~~yt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (474) T protein:vir:96 148 NGEFKTF---RVPAEQAIPIWTNKERDTLKAFIRYYRLDGAERVEYWTDSDVTYYEYQDGILIPDYYHGEEHIQSHYYVG 224 (474) T ss_pred CCceEEE---EEcccceEEEEcCCCCCceEEEEEEEeecCceEEEEEeCCeEEEEEecCCceeecccccccccccccccc Confidence 5554432 22222111 11110 000 000 000000000 Q ss_pred --ecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHhhc Q lcl|Aclame:pro 183 --LQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGH 260 (526) Q Consensus 183 --lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~ 260 (526) -.+++.+-..+- .+++.|.|.+..+-...=--...+..++..++.++.|+++.+--.+.+. .....++.. T Consensus 225 ~~~~~~g~iPvv~~--~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~------~~~~~~~~~ 296 (474) T protein:vir:96 225 NKRVSWGRVPFIPF--KNNPQEMSDLFMYKTIIDAMDKRLSDTQNTFDESTELIYILKGYEGQDL------DEFMRNLKY 296 (474) T ss_pred ccccCCCceeEEEe--ccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCcccc------cchhhhhhc Confidence 011111111111 2467889999886655555556788999999999999998774322211 123345556 Q ss_pred CeEEEec-CCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHH----HHHHHHHHH Q lcl|Aclame:pro 261 AAAGIIP-ETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEV----RHDLLASDA 335 (526) Q Consensus 261 ~~~~iip-~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v----~~~~~~ad~ 335 (526) ..++.++ +|.+++++.. ......++..++.+.+.|...-.++.++.+.. |+.. +-+.-+. ....+..-. T Consensus 297 ~~~i~~~~~~~~~~~l~~-~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~----~~n~-Sg~Al~~~~~~l~~k~~~k~ 370 (474) T protein:vir:96 297 YKAINVDGDGSGVDTIQI-EVPVQSSKEYLDMLRDYVIEFGQGVDFQQDKF----GNSP-SGIALKFMYSNLDLKANKLK 370 (474) T ss_pred CceEEecCCCCceeEEee-cCChHHHHHHHHHHHHHHHHHhCCcccccccc----cccc-HHHHHHHHHHHHHHHHHHHH Confidence 6666666 5778999974 34556788899999999999876666553321 1111 1122222 222333444 Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCC-CCCCccchh Q lcl|Aclame:pro 336 RQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGI-PQPAKNEPV 414 (526) Q Consensus 336 ~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Gl-p~~~~~e~~ 414 (526) +.+...|. ++++.++.+...... ..-..+.|....+.|..+.++. ++..|+ +|.+.+.+.++. +.++. ++ T Consensus 371 ~~~~~~l~-~~~~~i~~~~~~~~~--~~~i~i~f~~~~p~~~~e~~~~---~~~ag~-iS~et~~~~~~~v~d~~~--E~ 441 (474) T protein:vir:96 371 NKTLTALQ-ELLQYIIDFYKLNIK--VQDVEITFNFNVMVNELEQSQI---GVQSQY-LSKETVVTNHPWVDDPVA--EL 441 (474) T ss_pred HHHHHHHH-HHHHHHHHHhCCCcc--cceeeEEeccCCCcCHHHHHHH---HHhcCC-CchHHHHHhCCCCCCHHH--HH Confidence 55666664 466666665422211 1224677888888887777765 455786 898888888764 32221 11 Q ss_pred cccCCCcccccccccccccccccccccccccccchH Q lcl|Aclame:pro 415 LRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALD 450 (526) Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (526) ..-............. ................+ T Consensus 442 ~ri~~E~~e~~~~~~~---~~~~~~~~~~d~~~e~~ 474 (474) T protein:vir:96 442 ERIEQDNIDFNKQLPP---LEGDANGRAQDNESETN 474 (474) T ss_pred HHHHHHHHHHHhcccc---cccccccccCCCcccCC Confidence 1100000000000000 00000000111111111 No 187 >protein:vir:2732 Length: 501 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695105;genbank:gi:23455874;genbank:GeneID:955614 Probab=97.96 E-value=9.2e-06 Score=48.20 Aligned_cols=430 Identities=11% Similarity=-0.005 Sum_probs=188.3 Q ss_pred CCe--eecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCH---HHHHHHHHcccCCC---HHHHHHHHH----HH- Q lcl|Aclame:pro 1 MAQ--IVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTP---AKLARILVEAEQGN---LQAQAELFM----DM- 67 (526) Q Consensus 1 m~~--~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~l~~a~~g~---~~~~~~l~~----~m- 67 (526) |-+ .++..|+-+-.+. +..-.+. ..+.......++. +.+...+.....-. +..+...|+ .+ T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~r~~~l~~yY~g~~~~i~ 74 (501) T protein:vir:27 1 MEQTLFTDSTGQDLVLNL-RFHRESR-----IRYRADNLEELMVNNWELLKNFINHHKLRQAPRIQELLDYARGENHDVL 74 (501) T ss_pred CCceeEEeccchhhhhhc-ccChhHH-----HhhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc Confidence 332 2233333221111 1000000 0000000011111 11111111111001 111111111 00 Q ss_pred -------------HhccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-Hhhhhc Q lcl|Aclame:pro 68 -------------EERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHG 133 (526) Q Consensus 68 -------------~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G 133 (526) .....+..-.+.+...-+.+.+..+...++ ...+...+++.+++... .|+....++. ++.-|| T Consensus 75 ~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~~~d~--~~~~~~~~~l~~~~~~n-~~~~~~~~~~~~~~~~G 151 (501) T protein:vir:27 75 QFGRRKDREMADKRAVHNYGRMISKFKTGYLAGNPIRVEYDDN--DNNSQNDDTIKRIGRIN-DIDSHNRTLIRDLSQTG 151 (501) T ss_pred ccCccCccccccceeccchHHHHHHHHhhhhcccCeeEecCCc--cchHHHHHHHHHHHHhc-ChhHHHHHHHHHHhhCC Confidence 001344455666666667777777764332 33445667788877664 5888888776 688899 Q ss_pred ceeeeEEEeecCCeeEEeeeeeecCceeE--ecccC-Cce---EEecc-----------------------CCCCcee-- Q lcl|Aclame:pro 134 YSCIELEWALQGREWMPLAFHHRPQSWFQ--LNPED-QNE---LRLRD-----------------------NSPAGEA-- 182 (526) Q Consensus 134 ~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~--~~~~~-~~~---l~~~~-----------------------~~~~g~~-- 182 (526) .+ ++++|...+|...+. ..+|+... |+... +.. +++.. ....... T Consensus 152 ~a-~~~vy~ded~~~~i~---~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~~~~vyt~~~v~~~~~~~~~~~~~ 227 (501) T protein:vir:27 152 RA-YEVIYRNEYDETRIK---RLNPLETFVIYDNSLEDNSIAAVRYYNRGTLQNAKDVVEIYTNEHIYTLDASDDFNEIS 227 (501) T ss_pred eE-EEEEEeCCCCceEEE---EEccceeEEEecCCCCCceEEEEEEEEeeecCCcEEEEEEEeCCeEEEEEeCCceeecc Confidence 86 566665555554433 23332211 11110 100 00000 0000000 Q ss_pred --ecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH-HHHHHHHHH-HHHh Q lcl|Aclame:pro 183 --LQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTAD-EEKATLLRA-VTGL 258 (526) Q Consensus 183 --lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~-~e~~~l~~a-l~~~ 258 (526) -.+++.|-..+ ...|+.|.|.+..+....=--...+..++..++.|..|+++.+-...... +....+.+. +..+ T Consensus 228 ~~~~~~g~vPvv~--~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~ 305 (501) T protein:vir:27 228 VTTHAFGTVPITE--FLNNVDGIGDYETELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPKGMQASDMKRTRLMQL 305 (501) T ss_pred ccccCCCcccEEE--ecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecCccCCcccchhhhhhcCceee Confidence 01111111111 13577899999987766666667888888899999999999874332221 121111110 0000 Q ss_pred -hcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 259 -GHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQ 337 (526) Q Consensus 259 -~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~ 337 (526) ...+....+.+.+++++... .....++.+++.+.+.|.+.-.+..++.+...++ .|...-+....-....+..-.+. T Consensus 306 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~ka~~~~~~ 383 (501) T protein:vir:27 306 KPPKSADGKEGTVKAEYLTKS-YDVSGAEAYKTRLNRDIHIFTNIPDMSDTNFSGN-TSGEALKYKLFGLDQDRVDTQSQ 383 (501) T ss_pred cccccccCCCCCcceeeeecc-CCHHHHHHHHHHHHHHHHHHhCCcccCccccccC-chHHHHHHHHHHHHHHHHHHHHH Confidence 11111223345678888643 3445688899999999988866665554332111 12211111111222334444456 Q ss_pred HHHHHHHHHHHHHHHh-cC--CCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCC-CCCCccch Q lcl|Aclame:pro 338 LAATLSRDLLWPLLVL-NR--PGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGI-PQPAKNEP 413 (526) Q Consensus 338 i~~~ln~~li~~l~~~-Nf--~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Gl-p~~~~~e~ 413 (526) +...|. ++++.++.+ |. .+.........+.|....+.|..+.++.+.++. |+ +|.+.+.+.++. +.|..+-+ T Consensus 384 ~~~~l~-~~~~li~~~~~~~~~~~~~d~~~i~v~f~~~~p~n~~e~ad~~~kl~--g~-iS~et~l~~l~~v~D~~~E~e 459 (501) T protein:vir:27 384 FTQGLK-RRYRLAARIGSLVNEFKDFDESLLKITFTPNLPKSLNEQVSILTGLG--GQ-VSQETALSLSGLVESPNEELD 459 (501) T ss_pred HHHHHH-HHHHHHHHHHhhcccccccccccceEEeCCCCCcCHHHHHHHHHHHh--cc-CcHHHHHHhCCCCCCHHHHHH Confidence 666664 355555443 22 111111123568888899999999999999985 65 899888888854 33222211 Q ss_pred hcccCCCccc---ccccccccccccccc-cccccccccchHH Q lcl|Aclame:pro 414 VLRSAAQPAI---LSRQHGQRVAALATI-VGPRYGDQQALDK 451 (526) Q Consensus 414 ~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 451 (526) -+........ ............... ............+ T Consensus 460 ri~~E~~e~~~~~~~~~~~~~~~~~~d~~~~~~~d~~e~~~~ 501 (501) T protein:vir:27 460 KINKEVSEIDFKGYSNDFNEHVGKYTDEVKETHTDDFERAYE 501 (501) T ss_pred HHHHHHHhhhHhhhcCccccccccccCCCCCCccccccccCC Confidence 1110000000 000000000000000 0000111111111 No 188 >protein:vir:95149 Length: 501 # NCBI annotation: hypothetical protein ORF007 # Family: family:all:584 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293414;genbank:gi:148912835;genbank:GeneID:5228224 Probab=97.94 E-value=1e-05 Score=47.99 Aligned_cols=400 Identities=12% Similarity=0.077 Sum_probs=169.9 Q ss_pred CCeeecCCCCccCccccc-hhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHH---------HHHHHHHHHHhc Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLR-EPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQ---------AQAELFMDMEER 70 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~---------~~~~l~~~m~~~ 70 (526) |+. |+++... ....+.+.-++..+.+ ...+|.++.-.++ .....|+....+ T Consensus 1 m~~--------V~~~hp~y~~~~~~W~~ird~~~G-----------~~~~r~~g~~YLP~~~~e~~~~e~~~~Y~~rl~r 61 (501) T protein:vir:95 1 MPN--------VSFIRPELGKLLPLYYLIRDAIAG-----------EPTVKGARTTYLPMPNAEDQSKENKARYEAYLKR 61 (501) T ss_pred CCC--------CCCCCHHHHHHHHHHHHHHHHhcC-----------hHHHHhcccccCcCCCCCCCcccchHHHHHHhhc Confidence 552 2221111 1111222222222211 0222222222211 112334444433 Q ss_pred ---cHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHH-hhhhcceeeeEEEee--- Q lcl|Aclame:pro 71 ---DAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALD-GIGHGYSCIELEWAL--- 143 (526) Q Consensus 71 ---D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~ld-a~~~G~s~~Ei~w~~--- 143 (526) =.++...+..-...|...+-.++ . ...+..+++.+=..-.+++.++++++. ++.||.+.+=+.+-. T Consensus 62 A~~~n~~~~t~~~l~G~vf~k~p~~~----~---p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~ 134 (501) T protein:vir:95 62 AVFYNVARRTLFGLVGQVFMRDPVVK----V---PALLNPLVANATGSGINLTQLAKRAVSLNLAYSRAGLLVDYPTTEA 134 (501) T ss_pred cccCchHHHHHHHHhhhhhcCCccee----C---cHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeecCCCC Confidence 34445555555555555554443 1 122333332221111247888888774 667887755444311 Q ss_pred ---------------------------------cCCeeEEeeeeeecC-----ceeEe---------cccCCceE--E-e Q lcl|Aclame:pro 144 ---------------------------------QGREWMPLAFHHRPQ-----SWFQL---------NPEDQNEL--R-L 173 (526) Q Consensus 144 ---------------------------------~~g~~~~~~l~~r~~-----~~f~~---------~~~~~~~l--~-~ 173 (526) .+|...+..+..+.. .-|.. ..+..+.+ + + T Consensus 135 ~~~~t~a~~~~~~~rPy~~~~~~~~IinW~~~~v~g~~~l~~v~l~E~~~~~d~~f~~~~~~q~RvL~~~~~g~~~~~v~ 214 (501) T protein:vir:95 135 EGGASIADLEAGRIRPTLYVYSPTEIINWRTTDRGAEEVLSLVVLFETWCAADDGFEMKTSGQFRVLRLDEEGYYVHEIW 214 (501) T ss_pred cccccHHHHHhccCCcEEEEecHhhhcCcceeccCCceeeeEEEEEEEEeecCCCcccceeEEEEEEeeCCCceEEEEEE Confidence 122222222222210 00000 00000000 0 1 Q ss_pred ccC--C-C---------------------CceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHH-HHHHHHHH Q lcl|Aclame:pro 174 RDN--S-P---------------------AGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYAT-SDLAEMLE 228 (526) Q Consensus 174 ~~~--~-~---------------------~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~-~~w~~f~E 228 (526) +.. + . .+..+..=-|+++.... .+--.+.+.|..++.. -.++|-. .+.-.-+. T Consensus 215 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IPfv~~~~~~-~~~~~~~pPLl~lA~l-ni~hy~~ssd~~~~l~ 292 (501) T protein:vir:95 215 REPQPTKADGSKIPKGNYQQYVVYKPTDAQGKRLTEIPFMFIGSEN-NDSNPDNPNFYDLASL-NMAHYRNSADYEESCY 292 (501) T ss_pred EecCCcccCcceecCCcccccceeeeeccCCCcCCeeeEEEEecCC-CCCCCCccchHHHHHH-HHHHHhhhhHHHHHHH Confidence 110 0 0 00111111123222222 2222334444455533 4455544 45556677 Q ss_pred HcCCceEEEecCCCCCHHHHHHHHHHHHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcc Q lcl|Aclame:pro 229 IYGLPIRLGKYPPGTADEEKATLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTST 308 (526) Q Consensus 229 ~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~ 308 (526) .-+.|+++.+-. +++........--.+|++++..+|++.++.|++.++.+ .....++....+|..+ |..+... T Consensus 293 ~~~~P~l~i~G~---~~~~~~~~~~~~i~~G~~~~~~lP~~~~~~~ie~~~~~--i~~~~l~~l~~~m~~~--Ga~ll~~ 365 (501) T protein:vir:95 293 IVGQPTPVLIGL---TEEWVTNVLKGSVNFGSRGGIPLPVGADAKLLQASENT--MLKEAMDTKERQMVAL--GAKLVEQ 365 (501) T ss_pred HcccceeeeeCC---cccccccCCCCceeecccccccCCCCCceeEEecChhh--HHHHHHHHHHHHHHHH--HHhhccC Confidence 778998887632 22222211222245688999999999999999975333 3356677677777553 4443322 Q ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEec--CccccCHHHHHHHHHH Q lcl|Aclame:pro 309 TSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFD--LREQADITSMAQSIPA 386 (526) Q Consensus 309 ~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~--~~e~edl~~~a~~~~~ 386 (526) ...+.+++.+ .........++..-+..+++.++ +++++++.+-.-.... ++|++. +.....-...++++.+ T Consensus 366 ~~~~~Ta~~~--~~~~~~~~S~L~~~a~~le~al~-~~l~~~a~w~g~~~~~----~~v~i~~df~~~~~~~~~~~al~~ 438 (501) T protein:vir:95 366 KEVQRTATEA--ELEAASEGSTLSSATKNVSAAFE-WALKWAARWVGQADSG----VKFELNTDFDIARMTPDERRSLVE 438 (501) T ss_pred CccchhHHHH--HHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCc----eEEEEecccccccCCHHHHHHHHH Confidence 2222233333 23334445678888999999996 5889998875422111 234332 2221111345677778 Q ss_pred HHhCCCcCCHHHHHH---HhCCCCCCccchhcc--cCCCccc-ccccc-ccccccccccccccccccc Q lcl|Aclame:pro 387 LVNVGLEIPSAWVYD---KLGIPQPAKNEPVLR--SAAQPAI-LSRQH-GQRVAALATIVGPRYGDQQ 447 (526) Q Consensus 387 l~~~G~~v~~~~~~e---~~Glp~~~~~e~~~~--~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~ 447 (526) +...|. ++.+.+++ +.|++.+...++... -...... .++.. ...+...... ..... T Consensus 439 ~~~~G~-is~~t~~~~L~~~~v~~~~~~~e~e~i~~~~~~~~~~~~~~~~~~~~~gg~~----~~~~~ 501 (501) T protein:vir:95 439 EWQKGA-ITFEEMRTGLRKAGVATEDDSKAKEKIAKDTAEAMALATPANVPGDGSGGDN----VGNSE 501 (501) T ss_pred HHhCCC-CcHHHHHHHHHhCCCCChhHHHHHHHHHhhhcCcccccccCCCCCCCccccc----ccCCC Confidence 888887 77766543 458876544322110 0000000 00000 0000000000 01110 No 189 >protein:vir:9922 Length: 489 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795684;genbank:gi:28876464;genbank:GeneID:1257980 Probab=97.91 E-value=1.2e-05 Score=47.65 Aligned_cols=401 Identities=11% Similarity=0.008 Sum_probs=164.2 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHH---HHHHH---HHH------ Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQ---AELFM---DME------ 68 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~---~~l~~---~m~------ 68 (526) |++ -+=.-+. ....+|+..+...+.....-...++ .++|+ ++. T Consensus 1 ~~~---~~~~~~~----------------------~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~yy~g~~~i~~~~~~~ 55 (489) T protein:vir:99 1 MLQ---EDFEAID----------------------YESKLWIDQLKNYISRFKAEQLERLKELKRYYLGDNNIKYRPAKT 55 (489) T ss_pred CCc---cceeeeC----------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccc Confidence 221 0000000 0112222222222222111111111 11111 000 Q ss_pred --------hccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeE Q lcl|Aclame:pro 69 --------ERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIEL 139 (526) Q Consensus 69 --------~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei 139 (526) ...+...-.+.+...-+.+-+..+...+ +...++++.++... +|+.....+. ++.-||.++.=+ T Consensus 56 ~~~~~~~ki~~n~~~~iv~~~~~~l~g~~~~~~~~d------~~~~~~l~~~~~~n-~~~~~~~~~~~~~~~~G~~~~~v 128 (489) T protein:vir:99 56 DKYAADNRIASDFAKYITVFEQGYMLGVPVEYKNEN------KDLQAAIDLMSVRN-NEDYHNVKIKTDLSIYGRAYELL 128 (489) T ss_pred cccCCcceeecchHHHHHHHHhhhhccCCceeecCC------hhHHHHHHHHHhhc-ChhHHHHHHHHHHhhCCeEEEEE Confidence 0133444455555566677777776422 23456677777654 4666655554 688899765433 Q ss_pred EEee---cCCeeEEeeeeeecCcee--EecccC-C----------------------------ceEEeccC--CCCceee Q lcl|Aclame:pro 140 EWAL---QGREWMPLAFHHRPQSWF--QLNPED-Q----------------------------NELRLRDN--SPAGEAL 183 (526) Q Consensus 140 ~w~~---~~g~~~~~~l~~r~~~~f--~~~~~~-~----------------------------~~l~~~~~--~~~g~~l 183 (526) .+.. .++...+ ...+|..+ .++... + ....++.. +..+..+ T Consensus 129 ~~~~~~d~~~~~~i---~~~~p~~~~~v~dd~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~ 205 (489) T protein:vir:99 129 TVEKIDDKKTEVKL---YQLPAEQTFVIYDDTYQRNSLMAVHFYDIDYGSGKRKQIIKAYTSDTIYTYEDYNLETKGMRL 205 (489) T ss_pred eeccCcCCCcceEE---EEEcccceEEEEcCCCCCceEEEEEEEEEecCCCceEEEEEEEeCCcEEEEEecCCCccccee Confidence 2221 1222222 22222211 111000 0 00011100 0011000 Q ss_pred -----cCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCC--CCCHHHHHHHHHH-- Q lcl|Aclame:pro 184 -----QPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPP--GTADEEKATLLRA-- 254 (526) Q Consensus 184 -----p~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~--~~~~~e~~~l~~a-- 254 (526) .+...+=..+- ..++.|.|.+..+....=--...+..++..++.|..|+++.+--. +....+....... T Consensus 206 ~~~~~~~~g~vPvv~~--~n~~~~~s~~~~v~~liDa~d~~~s~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~ 283 (489) T protein:vir:99 206 KDYEGHFFKGVPVNEY--ANNEERTGAYESVLDNIDAYDLSQSELANFQQDSVNALLVIAGNAYTGADENDYLDDGRLNP 283 (489) T ss_pred cccccccCCceeEEEe--ecCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccchhhhhhccccc Confidence 11111100100 135678888877654444445667888888899999988865321 1111111111110 Q ss_pred ------HHHhhcCeEEEecC-------CceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhH Q lcl|Aclame:pro 255 ------VTGLGHAAAGIIPE-------TMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQ 321 (526) Q Consensus 255 ------l~~~~~~~~~iip~-------~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~ 321 (526) ...+.....+.++. +.+++++.. ......++..++++.+.|.+.--+..++.+...+..+.-|+ + T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al-~ 361 (489) T protein:vir:99 284 NGRLAISIGFKKAQVLILDDNPNPNGVKPQAYFLKK-EYDTAGSEAYKNRLVADILRFTFTPDTQDMKFSGVQSGESM-K 361 (489) T ss_pred ccccccccccccceeeeeccccCccccccceeeeee-cCChHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHH-H Confidence 00111112222222 345667753 33455678889999999987765554544322111111111 1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCCCc--ccceeEEecCccccCHHHHHHHHHHHHhCCCcCCH Q lcl|Aclame:pro 322 VHNEVRHDLLASDARQLAATLSRDLLWPLLVL---NRPGSPDV--RRAPRLVFDLREQADITSMAQSIPALVNVGLEIPS 396 (526) Q Consensus 322 vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~---Nf~~~~~~--~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~ 396 (526) ....-....+..-.+.+...+. ++++.++.+ ........ .....+.|....+.|..+.++++.+++ |+ +|. T Consensus 362 ~~~~~l~~k~~~k~~~~~~~l~-~~~~li~~~~~~~~~~~~~~~~~~~i~v~f~~~~p~d~~~~~~~~~kl~--gi-is~ 437 (489) T protein:vir:99 362 YKLMASDNYREKQERLFKKGLM-RRLRLAANIWAIKGNEATTYSLVNDTSIVFTPNLPQNDNEIVTAAQNLY--GI-VSD 437 (489) T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCccccccccccceEEeCCCCCcCHHHHHHHHHHHh--cc-CCH Confidence 1111122223333445555553 455555443 21111111 112467888888999999999999986 66 888 Q ss_pred HHHHHHhCC-CCCCccchhcc--cCC-Ccccccccccccccccccccccccc Q lcl|Aclame:pro 397 AWVYDKLGI-PQPAKNEPVLR--SAA-QPAILSRQHGQRVAALATIVGPRYG 444 (526) Q Consensus 397 ~~~~e~~Gl-p~~~~~e~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (526) +.+.+.++. ..+...+++.. ... ...................+.+..| T Consensus 438 et~~~~l~~v~~~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~p 489 (489) T protein:vir:99 438 QTIFEILNTVTGVDAEAELKRLKEEADKKQSLPEPRLVGDASGQEEPTAEKP 489 (489) T ss_pred HHHHHhcCCCCchhHHHHHHHHHHHHHHHhccccccccCCCCCCcCCCCCCC Confidence 888887643 22221111110 000 0000000000000000001111111 No 190 >protein:vir:3609 Length: 452 # NCBI annotation: ORF32 # Family: family:all:125 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112695;genbank:gi:13786563;genbank:GeneID:921063 Probab=97.86 E-value=1.4e-05 Score=47.16 Aligned_cols=403 Identities=11% Similarity=0.033 Sum_probs=180.0 Q ss_pred CC-----eeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHH---HH--HHHHHHHHhc Q lcl|Aclame:pro 1 MA-----QIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQ---AQ--AELFMDMEER 70 (526) Q Consensus 1 m~-----~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~---~~--~~l~~~m~~~ 70 (526) |- .+.-+-..++..+.+. +-+..|-.+ ..|+... ..--.|... +. .......... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~i~-----------~~i~~~~~~---~~r~~~~-~~Yy~g~~~i~~~~~~~~~~~~~ki~ 65 (452) T protein:vir:36 1 MKYKPPKLMTFSKDEPITVEVVT-----------KFMEKHKLE---VARYEYL-KNMYLGIMAIDDEPAKDSWKPDNRLA 65 (452) T ss_pred CcccCceeEEcCCccCCCHHHHH-----------HHHHHHHHH---HHHHHHH-HHHhccccccccCccccccCccceee Confidence 21 1111111222211111 111111000 0111110 000001000 00 0000000012 Q ss_pred cHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeE Q lcl|Aclame:pro 71 DAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWM 149 (526) Q Consensus 71 D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~ 149 (526) .+...-.+.+...-+.+.+..+.+.+ ....+++.++++.. .|+..+..+. ++.-+|.+. +++|-..+|... T Consensus 66 ~n~~~~ivd~~~~~l~g~~~~~~~~d------~~~~~~l~~~~~~n-~~~~~~~~~~~~~~~~G~~~-~~v~~d~~g~~~ 137 (452) T protein:vir:36 66 VNFTKYIVDTFTGYFNGIPVKKSHSD------KEILTKLQEFDNLN-DMEDEESELAKMACIYGRAF-EFLYQDEDTQTN 137 (452) T ss_pred cchHHHHHHHHhhhhcccCceeecCC------hhHHHHHHHHHhhc-ChhHHHHHHHHHHHhcCeEE-EEEEecCCCeeE Confidence 35566667777777888888876432 12345677777654 4777777666 688899754 566644445443 Q ss_pred EeeeeeecCcee--EecccC-C------------------------ceEEeccCCCC-----ceeecCCCeEEEeecCCC Q lcl|Aclame:pro 150 PLAFHHRPQSWF--QLNPED-Q------------------------NELRLRDNSPA-----GEALQPFGWIIHRPRARS 197 (526) Q Consensus 150 ~~~l~~r~~~~f--~~~~~~-~------------------------~~l~~~~~~~~-----g~~lp~~k~i~~~~~~~~ 197 (526) +. ..++... .|+... + ....+...... +.+ .++..+-..+. . T Consensus 138 i~---~~~p~~~~~v~d~~~~~~~~~~i~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~-~~~g~iPvv~~--~ 211 (452) T protein:vir:36 138 VV---YNSPENMFMVYDDTVKQEPLFAVRYGVDEDKKLQGEVYTLLETIKISGENDEISFGEGTY-NPYPDLPVVEF--Y 211 (452) T ss_pred EE---EEcccceEEEEcCCCCCceEEEEEEEEecCceEEEEEEecCeEEEEEEcCCceEEeccee-ccCCcccEEEe--c Confidence 32 2222111 111110 0 00111111100 011 11221111111 3 Q ss_pred CccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHhhcCeEEEecCC-----ceE Q lcl|Aclame:pro 198 GYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGHAAAGIIPET-----MAI 272 (526) Q Consensus 198 g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~~~~~iip~~-----~~i 272 (526) +++.|.|.+..+....=--...+..++..++.|..|+++.+-. ..++++.. ++.....+.++.+ .++ T Consensus 212 n~~~g~sd~e~v~~liDa~d~~~s~~~~~~~~~~~p~~~~~g~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 283 (452) T protein:vir:36 212 FNEERMSIFESVISLVNAFNKAISEKANDVDYFSDQYLTFLGA-AVEEEDLK-------NIRSNRVINYYADGEGKNVDV 283 (452) T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCceeEeecC-CcCchhhh-------hhhhcceEEecCCCCccCCcc Confidence 4667889988776665555667788999999999998888632 22222222 2233344555543 357 Q ss_pred EEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 273 DFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLV 352 (526) Q Consensus 273 e~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~ 352 (526) ++++. ......++..++.+.+.|...-.++.++.+.. |+.+.-|+ +....-....+..-.+.+...+. ++++.++. T Consensus 284 ~~l~~-~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~-gn~Sg~Al-~~~~~~l~~k~~~~~~~~~~~l~-~~~~li~~ 359 (452) T protein:vir:36 284 KFLEK-PDSDSQTENLLDRLTKLIFQTTMVANISDESF-GSSSGVSL-AYKLQAMSNLALSFQRKFQSSLN-SRYKLFCE 359 (452) T ss_pred eeEee-cCCHHHHHHHHHHHHHHHHHHhCccccCcccc-cCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH Confidence 88764 33456788899999999988765555443221 22211222 11112222333344455566664 45665555 Q ss_pred hc-CCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCccccccccccc Q lcl|Aclame:pro 353 LN-RPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQR 431 (526) Q Consensus 353 ~N-f~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~ 431 (526) +. ..+......-..+.|....+.|..+.++.+.+++ |+ +|.+.+.+.++.-. ...+++..-....+......... T Consensus 360 ~~~~~~~~~~~~~i~i~f~~~~p~d~~~~a~~~~k~~--g~-iS~et~~~~~~~~~-d~~~E~~ri~~E~~~~~~~~~~~ 435 (452) T protein:vir:36 360 LSTNVSNKDSWKDIEYTFTRNEPKDIKEQAETANILM--GI-TSQETALSVISVIP-DVQAEMEKIKKEEASTAIFDKDK 435 (452) T ss_pred HHhccCCccccccceEEeCCCCCcCHHHHHHHHHHHh--cc-CChHHHHHhCCCCC-CHHHHHHHHHHHHHHHHHHHhhc Confidence 42 2111111123467888888999999999999874 65 89999999987522 11111111000000000000000 Q ss_pred ccccccccccccccccc Q lcl|Aclame:pro 432 VAALATIVGPRYGDQQA 448 (526) Q Consensus 432 ~~~~~~~~~~~~~~~~~ 448 (526) ...............+. T Consensus 436 ~~~~~~~~~~~~~~~~e 452 (452) T protein:vir:36 436 QPSEKGTDTVVSETNEE 452 (452) T ss_pred cCCCCcccccCccccCC Confidence 00000000000000001 No 191 >protein:vir:94546 Length: 506 # NCBI annotation: minor head protein # Family: family:all:125 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223886;genbank:gi:62327098;genbank:GeneID:5075562 Probab=97.79 E-value=1.9e-05 Score=46.44 Aligned_cols=422 Identities=12% Similarity=0.029 Sum_probs=175.4 Q ss_pred eeecC----CCCcc---Cccccchhhhhhhhhhhhhhhhhhhccc-CHHHHHHHHHcccCCCHHHHHH-HH----HHHHh Q lcl|Aclame:pro 3 QIVDV----YGNPI---RTQQLREPQTSRLAGLAKEFAQHPAKGL-TPAKLARILVEAEQGNLQAQAE-LF----MDMEE 69 (526) Q Consensus 3 ~~~~~----~g~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~l~~a~~g~~~~~~~-l~----~~m~~ 69 (526) -++|. .++-+ ..+.+....--.+ +..|-.+.. ...++.+..+. .+..+..... .. ....- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~~i~~l------i~~~~~~~~~r~~~l~~YY~g-~~~~i~~~~~~~~~~~~~~~ki 73 (506) T protein:vir:94 1 MDYDLTEHKQANLIYQESLENLTPNKIMKF------ITHHFNYQRPRLEMLDDYYQG-YNLKILDKQSRRHEDGKADHRA 73 (506) T ss_pred CCcchhhhhcceeecccchhcCCHHHHHHH------HHHHHHHHHHHHHHHHHHhcC-CCccccccccccccccCCccee Confidence 12221 11111 1111111111000 000000000 01111111110 0000000000 00 00001 Q ss_pred ccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCee Q lcl|Aclame:pro 70 RDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREW 148 (526) Q Consensus 70 ~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~ 148 (526) ..+...-.+.+...-+.+.+..+...++ ...+.+..++... .|+.....+. ++..+|.+. +++|-..+|.. T Consensus 74 ~~n~~~~Iv~~~~~~l~G~p~~~~~~d~------~~~~~l~~~~~~N-~~~~~~~~~~~~~~~~G~a~-~~v~~ded~~~ 145 (506) T protein:vir:94 74 THSFAKYIADFQTSYSVGNPINVKLPDD------GSNSGFDTFNKAN-DVDAENYDLFLDMSRYGRAY-EYVYRGEDNEE 145 (506) T ss_pred ecchHHHHHHHhhhhhcccCceeecCcc------hHHHHHHHHHhcc-CHhHHHHHHHHHHHhcCeEE-EEEEecCCCee Confidence 2456666777777788888877765322 2345677777654 4666666555 688899865 56564445544 Q ss_pred EEeeeeeecCceeE--ecccC-Cce---EE-----------------------------eccCCCCcee----ecCCCeE Q lcl|Aclame:pro 149 MPLAFHHRPQSWFQ--LNPED-QNE---LR-----------------------------LRDNSPAGEA----LQPFGWI 189 (526) Q Consensus 149 ~~~~l~~r~~~~f~--~~~~~-~~~---l~-----------------------------~~~~~~~g~~----lp~~k~i 189 (526) .+. ..+|+... ++... +.. ++ +.+....+.. ..++..+ T Consensus 146 ~i~---~~~p~~~~~v~dd~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~yt~~~~~~~~~~~~~~~~~~~~~~~~g~v 222 (506) T protein:vir:94 146 HLA---KLDPLDTFVIYSTDVDPKPIMAVRYHQIELVDDNQVSTINYVPETWTADTYTLYNPTPIMGKMQVDTTKPITTF 222 (506) T ss_pred EEE---EEcccceEEEecCCCCCceEEEEEEEeeeeccCCceeEEEEEEEEEeCceEEEeccccCccceeccccccCCcc Confidence 332 23332221 11110 000 00 0000000000 0111111 Q ss_pred EEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHH------------------HHHHH Q lcl|Aclame:pro 190 IHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADE------------------EKATL 251 (526) Q Consensus 190 ~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~------------------e~~~l 251 (526) -..+ -..+..|.|.+..+....=-=...++.++...+.|..|+++.+-.+..... ..... T Consensus 223 Pvv~--~~n~~~~~sd~e~~~~liDa~d~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (506) T protein:vir:94 223 PVVE--FKNSNFRLGDFENVLPLIDLYDAAQSDTANYMTDLNEAMLIIQGDIDTLFEGSDMMNTIDPNDEDAMAKLAKDK 300 (506) T ss_pred ceEE--ecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCccccccchhccccccccccccccccccch Confidence 0000 023456778777766555445566778888888777776555421111000 01112 Q ss_pred HHHHHHhhcCeEEEecC---------CceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHH Q lcl|Aclame:pro 252 LRAVTGLGHAAAGIIPE---------TMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQV 322 (526) Q Consensus 252 ~~al~~~~~~~~~iip~---------~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~v 322 (526) ...+..+..+..+.++. +.+++++.. ......++..++.+.+.|...-.++.++.+...++.+.-|+.- T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~-~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Aik~- 378 (506) T protein:vir:94 301 LELIKEMKDANMLLLKSGMTVNGTQTSVDAKYINK-TYDVVGSEAYKKRVAGDIHKFSHTPDLTDENFASNSSGVAMQY- 378 (506) T ss_pred hHHHhhhhhcCeeeecccccccCccccccceeeee-cCCHHHHHHHHHHHHHHHHHHhCccccccccccccchHHHHHH- Confidence 23334444444444444 345666653 3355678889999999999887666665433222111112111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-CCCCCc-ccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHH Q lcl|Aclame:pro 323 HNEVRHDLLASDARQLAATLSRDLLWPLLVL-NR-PGSPDV-RRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWV 399 (526) Q Consensus 323 h~~v~~~~~~ad~~~i~~~ln~~li~~l~~~-Nf-~~~~~~-~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~ 399 (526) ...-....+..-.+.+...|. ++++.++.+ +. ++.... ....++.|....+.|..+.++.+.+|+ |+ +|.+.+ T Consensus 379 ~~~~l~~k~~~k~~~~~~~l~-~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~d~~e~a~~~~kl~--g~-iS~et~ 454 (506) T protein:vir:94 379 KVLGTVELASTKRRMFERGLY-ARYQIISDIENSIHGDWTFDPQELTFTFRDNLPADNISQIKALVQAG--AT-LPQKYL 454 (506) T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCccccccccceEEeCCCCCcCHHHHHHHHHHHh--cc-CChHHH Confidence 111112222333344555553 345544443 11 111111 123678899999999999999999985 65 999999 Q ss_pred HHHhCC-CCCCccchhcccCCCcccccccccccccccccccccccccccchHHHHH Q lcl|Aclame:pro 400 YDKLGI-PQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALA 454 (526) Q Consensus 400 ~e~~Gl-p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (526) .+.++. +.|..+-+-+....................... ....+..++.+. T Consensus 455 ~~~lp~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~e~~ 506 (506) T protein:vir:94 455 YQQLPGVTNPQDIVDMMKEQSANGDYSFDQNGVISNDGQT----NTTATQTDEEVR 506 (506) T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHhhcchhhcCCCcccCc----cccccccccCCC Confidence 999854 333221111111100000000000000000000 000000011110 No 192 >protein:vir:9568 Length: 410 # NCBI annotation: gp34 # Family: family:all:524 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862873;genbank:gi:32469465;genbank:GeneID:1461310 Probab=97.76 E-value=2.2e-05 Score=46.14 Aligned_cols=356 Identities=14% Similarity=0.054 Sum_probs=156.3 Q ss_pred cchhhhhhhhhhhhhhh-hhhhcccCH---HHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc----C Q lcl|Aclame:pro 17 LREPQTSRLAGLAKEFA-QHPAKGLTP---AKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSKRKRAILG----L 88 (526) Q Consensus 17 ~~~~~~~~~~~~~~~~~-~~~~~~l~~---~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~av~~----~ 88 (526) |.- -.+.+..+.+-+. .++...+.+ +.+...++ .--| -..+....+.. - T Consensus 1 l~~-~~~r~~~~~~yY~g~~~~~~~~~~~p~~~~~~~~-~v~n---------------------w~~~~Vds~a~rl~~~ 57 (410) T protein:vir:95 1 MNL-YQSRVNLRYKHYAMQHYEAPTGITIPAHIRAKYQ-AVLG---------------------WAAKGVDSLADRLIFR 57 (410) T ss_pred CCc-chhhHHHHHHHhcCCCCccccchhccHHHHhHHH-hhcc---------------------hhHHHHHHhHhhhccc Confidence 100 0111111111111 111111111 11111111 0011 11111111111 1 Q ss_pred CceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeeecCcee--Eecc Q lcl|Aclame:pro 89 DWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQSWF--QLNP 165 (526) Q Consensus 89 ~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f--~~~~ 165 (526) .|+ .++. . +.+++... .|+.....+. +|+-||.|+. ++|.-.++... +..++|++. .+|+ T Consensus 58 Gf~-----~~d~---~----l~~i~~~N-~ld~~~~~~~~~al~~G~sf~-~v~~~~d~~~~---i~~~sP~~~~~i~Dp 120 (410) T protein:vir:95 58 AFA-----NDDF---N----VTEIFDRN-NPDIFFDSAILSALIGSCSFV-YISKGEDDEVR---LQVIESSNATGVIDP 120 (410) T ss_pred ccc-----CCCc---h----HHHHHhhc-ChHHHHHHHHHHHHHhCceeE-EEecCCCCceE---EEEEcccceEEEEeC Confidence 121 1111 1 34555432 4666666554 7999999654 45754444332 333333221 1222 Q ss_pred cCCce-------------------E-------EeccCCCCce---eecCCCeEEEeecCCCCccccch-hHHHHHHHHHH Q lcl|Aclame:pro 166 EDQNE-------------------L-------RLRDNSPAGE---ALQPFGWIIHRPRARSGYVARSG-LFRVLAWPYLF 215 (526) Q Consensus 166 ~~~~~-------------------l-------~~~~~~~~g~---~lp~~k~i~~~~~~~~g~p~g~g-Ll~~~~~~~~f 215 (526) ..+.. + ....++.... +++.--++.+.++...+.|+|.| +.+.+....=- T Consensus 121 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~~~l~~~~G~s~I~~~v~~l~da 200 (410) T protein:vir:95 121 ITGLLVEGYAVLARDDYNRPTLEAYFEPNATHFIPKDGEPYSVTNETGIPLLVPVIHRPDAVRPFGRSRITRAGMYYQKY 200 (410) T ss_pred CCCceEEEEEEEEecCCCeEEEEEEEeCCcEEEEeeCCccccccCCCCCcceEEecccccCCccCCccccchhHHHHHHH Confidence 11111 0 0111111111 11112346666777778889888 44555444333 Q ss_pred HHHHHHHHHHHHHHcCCceEEEec--CCCCCHHHHHHHHHHHHHhhcCeEEEecCCc---eEEEeecCCCChHHHHHHHH Q lcl|Aclame:pro 216 RHYATSDLAEMLEIYGLPIRLGKY--PPGTADEEKATLLRAVTGLGHAAAGIIPETM---AIDFQQAAQGSSEPFLAMMR 290 (526) Q Consensus 216 K~~~~~~w~~f~E~~G~P~~vgk~--~~~~~~~e~~~l~~al~~~~~~~~~iip~~~---~ie~~~a~~~~~~~~~~li~ 290 (526) -+..+..-+.-.|-|+.|.++.+- +.+...+ . + .+..+....+|++. .++|-+-..++...|...++ T Consensus 201 ~~r~~~~~~~~~e~~a~pqr~i~G~d~d~~~~~---~-~----~~~~~~i~~~~~~~~~~~~~v~q~~~~~l~~~~~~l~ 272 (410) T protein:vir:95 201 AKRTLERADITAEFYSWPQKYILGLDPDAEPME---K-W----KATVSSLLTISSSDKGVKPSVGQFTTASMSPFTEQLR 272 (410) T ss_pred HHHHHHHHHHHHHHhcchhheeeccCCCCCcCc---h-h----hhhhhhheeccCCCCCCcceEEecCCCChHHHHHHHH Confidence 344555566677889999777652 2121111 1 1 11224466677654 36666655566677877777 Q ss_pred HHHHHHHHHHhchhhhcc--cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCccccee Q lcl|Aclame:pro 291 QSEDAISKAVLGGTLTST--TSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVL--NRPGSPDVRRAPR 366 (526) Q Consensus 291 ~~d~~Isk~ilGqtltt~--~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~--Nf~~~~~~~~~p~ 366 (526) .+-++||-.- +=+...- ..++..+.-|+...+.. ....++.-.+.+...+. ++++..+.+ |++.......-.. T Consensus 273 ~l~~~~a~~s-~lP~~~lg~~~~NpsSa~Al~a~~~~-L~~ka~~k~~~fg~~l~-~~~rla~~i~~~~~~~~~~~~~~~ 349 (410) T protein:vir:95 273 TAAAGFAGEM-GLTLDDLGFVSDNPSSVEAIKASHEN-LRLAGRKAQRSLGAGLL-NVAYVAACLRDEFRYTRSQFVRTA 349 (410) T ss_pred HHHHHHhhhc-CCCHHHhccccCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCcccccceee Confidence 7777777552 1111111 01111122244333333 23333444566777775 466665554 3332211111123 Q ss_pred EEec---CccccCHHHHHHHHHHHHhCC-CcCCHHHHHHHhCCCCCCccchhcccCCCccc Q lcl|Aclame:pro 367 LVFD---LREQADITSMAQSIPALVNVG-LEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAI 423 (526) Q Consensus 367 ~~~~---~~e~edl~~~a~~~~~l~~~G-~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~ 423 (526) +.|. ..+...+...|+++.||+.+| ..++.+.+++.+|+.+++..........+... T Consensus 350 v~W~p~~d~~~~s~a~~aDa~~Kl~~a~~g~~~~~~~~~~lg~~~~~~~~~~~~e~~~~g~ 410 (410) T protein:vir:95 350 VKWEPLFEADANTMTMIGDGVVKLNQALPGYINAETIRDLTGIAGDMSAKPVVSEGGSNGE 410 (410) T ss_pred EEeeecCCcchhhHHHHHHHHHHHHHhccCCccHHHHHHhcCCChHHHHHHHHHHHHhCCC Confidence 4443 334446788999999999985 23778889999999654322111110000000 No 193 >protein:vir:96494 Length: 501 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238488;genbank:gi:66391764;genbank:GeneID:5176916 Probab=97.72 E-value=2.5e-05 Score=45.80 Aligned_cols=435 Identities=11% Similarity=0.003 Sum_probs=184.9 Q ss_pred CCee--ecCCCCc--cCc----cc--------cchhhhhhhhhhhhhhhhhhhccc-CHHHHHHHHHcccCCCHHH-H-- Q lcl|Aclame:pro 1 MAQI--VDVYGNP--IRT----QQ--------LREPQTSRLAGLAKEFAQHPAKGL-TPAKLARILVEAEQGNLQA-Q-- 60 (526) Q Consensus 1 m~~~--~~~~g~p--~~~----~~--------~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~l~~a~~g~~~~-~-- 60 (526) |-+= .+..++- ++. .. ...........+.+.+..|-.+.. ...++.+.... ...++.. . T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~r~~~~~~yY~g-~~~~i~~~~~~ 79 (501) T protein:vir:96 1 MEQTLFTDSTGQERVLNLRFHRESRIRYRADNLEELMVNNWELLKNFINHHKLRQAPRIQELLDYARG-ENHDVLKSGRR 79 (501) T ss_pred CceeeeeecccceeccccccchhHHhhhcccccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcccCcccc Confidence 3221 1111110 000 00 000000000001111111110000 00111111100 0000000 0 Q ss_pred HHH-HHHHHhccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-Hhhhhcceeee Q lcl|Aclame:pro 61 AEL-FMDMEERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIE 138 (526) Q Consensus 61 ~~l-~~~m~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~E 138 (526) ... ...-.-..++..-.+.+...-+.+.+..+...++ .+.+...+++.+++... .|+.....+. ++.-||.+. + T Consensus 80 ~~~~~~~~ri~~n~~k~Ivd~~~~yl~g~p~~~~~~~~--~~~~~~~~~l~~~~~~n-~~~~~~~~~~~~~~~~G~a~-~ 155 (501) T protein:vir:96 80 KDNEMADKRAVHNYGRMISKFKTGYLAGNPIRVEYDDN--DDNSQNDDAIKRIGRIN-DLDSLNRTLIRDLSQTGRAY-E 155 (501) T ss_pred CccccccceeecchHHHHHHHHhhhhcccCeeEeeCCc--cchhHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCeEE-E Confidence 000 0000012445555666677777888888875543 33455667788887764 4777777666 688899765 5 Q ss_pred EEEeecCCeeEEeeeeeecCcee--EecccC-Cce---EEe------------------------ccCCCCc---eeecC Q lcl|Aclame:pro 139 LEWALQGREWMPLAFHHRPQSWF--QLNPED-QNE---LRL------------------------RDNSPAG---EALQP 185 (526) Q Consensus 139 i~w~~~~g~~~~~~l~~r~~~~f--~~~~~~-~~~---l~~------------------------~~~~~~g---~~lp~ 185 (526) ++|...+|...+. ..+|... .|+... +.. +++ ...+... ..-.+ T Consensus 156 ~v~~dedg~~~i~---~~~p~~~~~v~d~~~~~~~~~~v~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~ 232 (501) T protein:vir:96 156 VIYRSEYDETRIK---RLSPLETFVIYDNSLEDNSIAAVRYYNRGTLQSAKDVVEIYTDEHIYTLDASDDFNEISVTTHA 232 (501) T ss_pred EEEEcCCCceEEE---EEccceeEEEEcCCCCCceEEEEEEEEeecCCCcEEEEEEEcCCcEEEEeeCCCceeccccccC Confidence 6665445554332 3333222 121110 100 000 0000000 00011 Q ss_pred CCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHH-HHHHHHHH-HHHhhc-Ce Q lcl|Aclame:pro 186 FGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADE-EKATLLRA-VTGLGH-AA 262 (526) Q Consensus 186 ~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~-e~~~l~~a-l~~~~~-~~ 262 (526) +..+-+.+- ..++.|.|.+..+....=.-...+..++..++.|..|+++.+-....... ....+... +-.+.. .+ T Consensus 233 ~g~vPvv~~--~nn~~g~sd~e~v~~liDa~d~~~s~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (501) T protein:vir:96 233 FGTVPITEY--LNNIDGIGDYETELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPKGMQASDMKRTRLMQLKPPKS 310 (501) T ss_pred CCccceEEe--cCCccCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecccccCcccchhhhhhcCeeeeccccc Confidence 121111111 35788999999876665556678888999999999999887743222211 11111110 000111 11 Q ss_pred EEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 263 AGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATL 342 (526) Q Consensus 263 ~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~l 342 (526) .-....+.+++|+... .+...++.+++.+.+.|...-....++.+...++ .|...-+....-....+..-.+.+...| T Consensus 311 ~~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~ka~~~~~~~~~~l 388 (501) T protein:vir:96 311 ADGKEGTVKAEYLTKS-YDVSGAEAYKTRLNRDIHIFTNTPDMSDTNFSGN-TSGEALKYKLFGLDQDRVDTQSQFTKGL 388 (501) T ss_pred ccccccCcceeeEecc-CCHHHHHHHHHHHHHHHHHHhCCcccCccccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 1122345678888643 3445688899999998888765555444322111 1211111111222233344445566666 Q ss_pred HHHHHHHHHHh-cC--CCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCC-CCCCccchhcccC Q lcl|Aclame:pro 343 SRDLLWPLLVL-NR--PGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGI-PQPAKNEPVLRSA 418 (526) Q Consensus 343 n~~li~~l~~~-Nf--~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Gl-p~~~~~e~~~~~~ 418 (526) . ++++.++.+ +. .+........++.|....+.|..+.++.+.+++ |+ +|.+.+.+.++. +.|..+-+-+... T Consensus 389 ~-~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~n~~e~ad~~~kl~--g~-iS~et~~~~l~~v~D~~~E~~ri~~E 464 (501) T protein:vir:96 389 K-RRYRLAARIGSLVNEFKDFDESLLKITFTPNLPKSLNEQVSILTGLG--GQ-VSQETALSLSGLVESPNEELDKINKE 464 (501) T ss_pred H-HHHHHHHHHHHhcccccccccccceEEeCCCCCcCHHHHHHHHHHHh--cc-CchHHHHHhCCCCCCHHHHHHHHHHH Confidence 4 355554433 21 111111123578899999999999999999986 65 899988888865 2222111101100 Q ss_pred CC---ccccccccccccccccc-ccccccccccchHH Q lcl|Aclame:pro 419 AQ---PAILSRQHGQRVAALAT-IVGPRYGDQQALDK 451 (526) Q Consensus 419 ~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 451 (526) .. ............+.... ......+......+ T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~e~~~~ 501 (501) T protein:vir:96 465 MSEIDFKGYSNDFNEHVGKYTDEVKETHTDDFEREYE 501 (501) T ss_pred HHHhhccccccchhhcccccCCcCCCCCCCccccccC Confidence 00 00000000000000000 00011111111111 No 194 >protein:vir:105154 Length: 525 # NCBI annotation: conserved phage-related protein # Family: family:all:6660 # MgeID: mge:1466 # MgeName: C-St # Cross-refs: genbank:acc:YP_398597;genbank:gi:80159853;genbank:GeneID:3772992 Probab=97.69 E-value=2.8e-05 Score=45.55 Aligned_cols=433 Identities=13% Similarity=0.105 Sum_probs=209.7 Q ss_pred CCeeecCCCCc--cCccccchh-hhhhhhhhhhhhhhh-----------h----hcc----cCHHHHHHHHHcccCCCHH Q lcl|Aclame:pro 1 MAQIVDVYGNP--IRTQQLREP-QTSRLAGLAKEFAQH-----------P----AKG----LTPAKLARILVEAEQGNLQ 58 (526) Q Consensus 1 m~~~~~~~g~p--~~~~~~~~~-~~~~~~~~~~~~~~~-----------~----~~~----l~~~~~~~~l~~a~~g~~~ 58 (526) |.+--+.-.+- +....+.-+ -...+-.+.|.+..| . ..| +..+.+.-.+.+ +. T Consensus 1 ~~~~~~~~~~~~t~~k~~~~~e~~~~~~n~~~~~y~ty~~~~~~f~~gfv~~~~~ng~i~~v~~~~l~~~f~n-----pd 75 (525) T protein:vir:10 1 MTRTKGSKNKSTTIEKQSLQIEQLQEHINELERQYNTYDDVVDAFIDGFVMDLCNNGKIKTVNLDTLQLWFNN-----PD 75 (525) T ss_pred CCCCcCCcccccchhhhhhhHHHHHHHHhhhhhhcchhhhHHHHHHHHHHHHhhcCCceeeeeHHHHHhhhcC-----hH Confidence 77744443221 222222211 112222222332222 1 111 122233333322 22 Q ss_pred HHHHHHHH----HHhccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHHh----- Q lcl|Aclame:pro 59 AQAELFMD----MEERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDG----- 129 (526) Q Consensus 59 ~~~~l~~~----m~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda----- 129 (526) .|.+-.++ ..-.|+.|....+-. -++-.+++.|..-... ...++.--.+...|..----.++.+++|-- T Consensus 76 ~~~~~i~~l~~y~yi~~~~v~ql~~li-~~lp~l~y~i~~~~~~-k~~~~~~s~~n~~l~k~i~hk~ltrdll~q~a~~g 153 (525) T protein:vir:10 76 KYINNIVNLLTYYYIIDGNVFQLYDLI-FSLPPLDYQIKVLKRD-KDYKEDLSTINLYLEKKIQHKQLTRDLLVQLAHSG 153 (525) T ss_pred HHHHHHHHHHHHhhhhcchHHHHHHHH-HhcCCcceeehhhhhc-cchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhccC Confidence 22222222 122588888755544 4556677877654322 222223333333332211122333343322 Q ss_pred ----hhhc-------ceeeeEEE----eecCCeeEEeeeeeecCceeEecccCCceEE-------ecc---------CC- Q lcl|Aclame:pro 130 ----IGHG-------YSCIELEW----ALQGREWMPLAFHHRPQSWFQLNPEDQNELR-------LRD---------NS- 177 (526) Q Consensus 130 ----~~~G-------~s~~Ei~w----~~~~g~~~~~~l~~r~~~~f~~~~~~~~~l~-------~~~---------~~- 177 (526) +|.| |-+-|+.| .+..|.|+. .++-.||.--.+....+. ..+ ++ T Consensus 154 tlig~wlg~~~~py~~vf~~~kyvfp~~r~~g~~v~----vid~~~f~~~~~~~r~~~~~~lsp~i~~~~y~~~~~~~~~ 229 (525) T protein:vir:10 154 TLIGTWLGSKREPYFNVFNNLKYVFPYGRAKGKMVA----VIDLQWFDEMSELERKLTFENLSPLITENKYKKWKEYNGE 229 (525) T ss_pred ceeEeeecCCCCcchhhhhhhhhhccccccCCceEE----EEehHHhhhhhHHHHHHHHHhhchhhhhhhhhHHhhcccc Confidence 1222 22233332 233454432 334445432111111000 000 11 Q ss_pred ----CCceeecCCCeEEEeecCCCCccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCC------CHH Q lcl|Aclame:pro 178 ----PAGEALQPFGWIIHRPRARSGYVA-RSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGT------ADE 246 (526) Q Consensus 178 ----~~g~~lp~~k~i~~~~~~~~g~p~-g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~------~~~ 246 (526) ..-+++|..+.++.+...-+-||- |.++.-+.+..+..|+..-...-..+.|.-.|+++-|+.... .+. T Consensus 230 ~~~~~r~i~LP~e~t~~lr~~tl~rnqrlG~s~vtp~l~dI~hk~klrd~EqsIA~kii~a~avLk~gg~~gn~mk~p~~ 309 (525) T protein:vir:10 230 NEDALRYIMLPISKTLVARIHTLSRNQRLGIPYGTQTLFDIQHKQKLRDLEQSIADKIIKAMAVLKFRGKDDNDSKVKES 309 (525) T ss_pred cchhheeeecccceeEEeeecccccCcccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhheeeeeccccCccccCchH Confidence 113578888887777766666665 888888888899999988888888999999999998875322 234 Q ss_pred HHHHHHHHHHHhhcC--------eEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHH-hchhhhcccccccchhh Q lcl|Aclame:pro 247 EKATLLRAVTGLGHA--------AAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAV-LGGTLTSTTSQSGGGAF 317 (526) Q Consensus 247 e~~~l~~al~~~~~~--------~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~i-lGqtltt~~~~~~~gS~ 317 (526) .+++++..|+.+-.. +++.+|.-.+|+|.+..+|.-..=..-.+..+.-|.-+. +.+.|++ |.||.| T Consensus 310 ~kqkil~gVk~aleK~~kdK~Gi~vi~~Pdfa~~efp~ik~~~~glDg~K~d~I~~DI~~A~GlS~sL~n----GdggNy 385 (525) T protein:vir:10 310 AKRKVLAGVKRALEKGVKDKNGIACIAMPDFATFEFPEIKNGDKTLDPKKYDSIDNDITNATGISQVLTN----GTKGNY 385 (525) T ss_pred HHHHHHHHHHHHHhcccccccCeEEEeccceeecccccccCcccCCCchhhhhhhhhhhhhhccceeeec----CCCCce Confidence 467777777665432 345569999999988654321111113455677776664 4455654 456899 Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHH Q lcl|Aclame:pro 318 ALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSA 397 (526) Q Consensus 318 a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~ 397 (526) |.+.+..++|-..+---.+.|++.-| +|+.|+ |+....... .|.++...+.++++..+.+-+|.+.|+ +.. T Consensus 386 Ataslnld~fykkigVm~e~Iee~y~-kL~d~V----l~~~k~~ny--ifnydkd~pi~~kkk~d~LIkL~d~g~--s~k 456 (525) T protein:vir:10 386 ASAKLNLDVFYKKIGVMLEIIEEIYN-QLIDII----LGEEKGCNY--IFQYNKDTPIEREKKLDTLIKLEAQGY--SAK 456 (525) T ss_pred eeeeeeHHHHHHHHHHHHHHHHHHHH-HHHhhh----cCcccCcce--EEecCCCchhhhhhhhhhhhhhhccch--hhh Confidence 99999999988877777777775553 455555 443322221 356777778888888888888888875 344 Q ss_pred HHHHHhCCCCCCccchhcc---------cCCCcccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 398 WVYDKLGIPQPAKNEPVLR---------SAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALADLPAKDMQNQANDL 468 (526) Q Consensus 398 ~~~e~~Glp~~~~~e~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (526) ++-+-.|+.....-|+.+- .-.+|.......+ +....-+.+. .+.....+..+... +. .+ T Consensus 457 ~vldl~gis~e~y~E~s~yEtE~lkl~EKi~pp~~~~v~SG-k~~n~iG~P~--~dd~~~~dati~s~-----~~---~~ 525 (525) T protein:vir:10 457 YVLDILGISSEEYFEESIYEIEKLKLREKIMPPLNTNVLSG-KDGNDIGSPK--LDDSDSSDATIESK-----ER---GV 525 (525) T ss_pred hhhhhhccCcchHHHHHHHHHHHHHHhhhccccccceeeec-cccccccCCc--cCCCcchhhhhhhh-----hc---CC Confidence 4555666654333222110 0001111111111 0000000000 00000111111000 00 00 No 195 >protein:vir:2500 Length: 501 # NCBI annotation: putative portal gp5 # Family: family:all:524 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569741;genbank:gi:18496891;genbank:GeneID:932330 Probab=97.59 E-value=4e-05 Score=44.68 Aligned_cols=415 Identities=13% Similarity=0.065 Sum_probs=166.5 Q ss_pred CCeeecCC-CCc---cCcccc--chhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcc------cCCCHHHHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVY-GNP---IRTQQL--REPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEA------EQGNLQAQAELFMDME 68 (526) Q Consensus 1 m~~~~~~~-g~p---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a------~~g~~~~~~~l~~~m~ 68 (526) |..-||-- --| |+.-.. ...+.. ..+.+-+..|-.+--...++.+..+.. ..+-...+..+-..+. T Consensus 1 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~l~~~l~~~~~~~~~rl~~l~~YY~G~~~~~~~~~~~~~~~~~~~~~~v 78 (501) T protein:vir:25 1 MTVPVDVIADAPAADVEFPEDSMSREQLG--ALVADMWRLHISERQWLDRIYEYTKGLRGRPEVPEGASDEVKELAKLSV 78 (501) T ss_pred CcccchhhhccCcccccCCcccCChHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhccccCChhhhhhHhhhh Confidence 55433321 111 111111 000110 111111111111100001111111100 0000000000000000 Q ss_pred hccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHH-HHhhhhcceeeeEEEeecCCe Q lcl|Aclame:pro 69 ERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDA-LDGIGHGYSCIELEWALQGRE 147 (526) Q Consensus 69 ~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~-lda~~~G~s~~Ei~w~~~~g~ 147 (526) -..-+-++++....+.--.|.+ +++ +. . +.+.+++... .|+....++ .+|.-||.|. +++|...++. T Consensus 79 --~n~~~~ivd~~a~~l~~~gf~~--~d~-~~-~----~~l~~i~~~N-~~d~~~~~~~~~a~i~G~ay-~~v~~de~~~ 146 (501) T protein:vir:25 79 --KNVLSLVRDSFAQNLSVVGYRN--ALA-KE-N----DPAWEMWQRN-RMDARQAEVHRPALTYGASY-VTVTPTDEGP 146 (501) T ss_pred --cChHHHHHHHHHhhhcccceec--CCc-cc-h----HHHHHHHHhc-ChhHHHHHHHHHHhhcCceE-EEEecCCCCC Confidence 0011111111111111122222 221 11 1 2234455432 367776664 4788999975 7778655542 Q ss_pred eEEeeeeeecCce-e-Ee-cccCCc-e---EEec--cCC--C-Cceee-------------------------------- Q lcl|Aclame:pro 148 WMPLAFHHRPQSW-F-QL-NPEDQN-E---LRLR--DNS--P-AGEAL-------------------------------- 183 (526) Q Consensus 148 ~~~~~l~~r~~~~-f-~~-~~~~~~-~---l~~~--~~~--~-~g~~l-------------------------------- 183 (526) .+...+|+. | .| ++..+. . +++. ... . .-..+ T Consensus 147 ----~i~~~sp~~~~~iy~D~~~~~~~~~ai~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (501) T protein:vir:25 147 ----VFRTRSPRQILAVYADPSVDAWPQYALETWVAQKDAKPHRRGVLYDDTYMYELDLGEVVLGDAGGGQATQQPVNVR 222 (501) T ss_pred ----eEEEeccccEEEEEecCCCCcceeEEEEEEeeccccCcceeEEEecCeeEEEEecCceeeeecccccccccccccc Confidence 233333332 2 12 111111 0 0000 000 0 00000 Q ss_pred ------------cCCCe--EEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHH Q lcl|Aclame:pro 184 ------------QPFGW--IIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKA 249 (526) Q Consensus 184 ------------p~~k~--i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~ 249 (526) .++.. +++..+....+++|.|-+..+....=-=...+...+...+-|..|.++.+- .+.++.. T Consensus 223 ~~~~~~~~~~~~~~~~~vPiv~f~N~~~~~~~g~sdie~v~~l~Da~~~~~s~~~~~~e~~a~p~~~i~G---~~~~~~~ 299 (501) T protein:vir:25 223 EVTDVIEHGATFEGKPVCPVVRFVNGRDADDMIVGEVAPLILLQQAINSVNFDRLIVSRFGANPQRVISG---WTGSKAE 299 (501) T ss_pred ccccccccccccCCccceeeEeccCccccCccccchhhhhHHHHHHHHHHHHHHHHHHHhhccHHHHHhC---CCCCccc Confidence 11111 111112223366788877765444434444566777889999999877652 2111111 Q ss_pred HHHHHHHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHH Q lcl|Aclame:pro 250 TLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHD 329 (526) Q Consensus 250 ~l~~al~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~ 329 (526) . ..+..+...++| |.+.+|.+-..++...|...++.+-++|++.--.+....+...++. |...-.....-... T Consensus 300 ~-----~~~~~~~i~~~~-~~~~~~~q~~~~~~~~~~~~l~~~i~~i~~~s~~P~~~~~~~~~N~-Sg~Al~~~~~~l~~ 372 (501) T protein:vir:25 300 V-----LKASALRVWTFE-DPEVKAQAFPPASVEPYNLILEEMLQHVAMVAQISPAQVTGKMINV-SAEALAAAEANQQR 372 (501) T ss_pred h-----hhhcccceeccC-CCCceEEEecccChHHHHHHHHHHHHHHHhhcCCChhhhccccCCh-HHHHHHHHHHHHHH Confidence 1 122334444444 4456666655556677888888888888887544433222111112 22222233333444 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHH-HhCCCCC Q lcl|Aclame:pro 330 LLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYD-KLGIPQP 408 (526) Q Consensus 330 ~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e-~~Glp~~ 408 (526) .+..-.+.+...|+ ++++.++.+..........-..+.|....+.++.+.|+++.||+.+|+ +.+.+.+ ..|+.++ T Consensus 373 ka~~k~~~f~~~l~-~~~rl~~~~~~~~~~~~~~~i~v~w~~~~~~s~~~~ada~~kl~~~gi--s~et~~~~~~g~~~~ 449 (501) T protein:vir:25 373 KLAAKRESFGESWE-QLLRLAAEMDDDPDTAADSGAEVLWRDTEARSFGAVVDGITKLASAGI--PIEHLLSMVPGMTQQ 449 (501) T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHhcCC--CHHHHHHHcCCCCHH Confidence 55566667777785 466666666654332222234677878888899999999999998885 5555555 4699754 Q ss_pred Cccchhcc---c-----------CCCcccccccccccccccccccccccccccc Q lcl|Aclame:pro 409 AKNEPVLR---S-----------AAQPAILSRQHGQRVAALATIVGPRYGDQQA 448 (526) Q Consensus 409 ~~~e~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (526) +-.+ ... . ...+.+.....+...+..... +...+..-+ T Consensus 450 ~ie~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~ 501 (501) T protein:vir:25 450 TIQA-IKDSLRGGEVKSLVDKLLSNEPAPVPPPPPQAAAQALNE-GGVNGNGGA 501 (501) T ss_pred HHHH-HHHHHHHHhHHHHHHHhhccCcCCCCCCCCCCCcccccc-ccCCCCCCC Confidence 3211 100 0 000000000000000000000 000000000 No 196 >protein:vir:4223 Length: 486 # NCBI annotation: predicted 53.7Kd protein # Family: family:all:524 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039678;swissprot:sw:q05220;genbank:gi:9625444;uniprot:Q05220;genbank:GeneID:2942930;interpro:IPR010859 Probab=97.58 E-value=4.2e-05 Score=44.59 Aligned_cols=419 Identities=11% Similarity=-0.000 Sum_probs=160.2 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHH----HHHHHHHhccHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQA----ELFMDMEERDAHLFA 76 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~----~l~~~m~~~D~~v~s 76 (526) |..+++-.-.+-....+ +..+.+.+..+.. ...++.+..+.- . .+.... .-+..+...-....- T Consensus 1 ~~~~~~~~~e~~~~~~~-------~~~l~~~~~~~~~---r~~~l~~YY~G~-~-~i~~~~~~~~~~~~~~~~v~n~~~~ 68 (486) T protein:vir:42 1 MTAPLPGMEEIEDPAVV-------REEMISAFEDASK---DLASNTSYYDAE-R-RPEAIGVTVPREMQQLLAHVGYPRL 68 (486) T ss_pred CCCCCCCCCCcccHHHH-------HHHHHHHHHHHHH---HHHHHHHHhccc-C-cchhcccccchhHhhhhhccchHHH Confidence 55444433332221111 1122222222111 111111111110 0 000000 000000001111122 Q ss_pred HHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeE-----E Q lcl|Aclame:pro 77 EMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWM-----P 150 (526) Q Consensus 77 ~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~-----~ 150 (526) +++.....+....|.+ +++ +..+ +.+.+++... .|+....+++ +|.-||.| ++++|...++... . T Consensus 69 iVd~~~~~l~~~g~~~--~~~-~~~~----~~~~~i~~~N-~~d~~~~~~~~~a~~~G~a-y~~v~~~e~~~~~~~~~~~ 139 (486) T protein:vir:42 69 YVDSVAERQAVEGFRL--GDA-DEAD----EELWQWWQAN-NLDIEAPLGYTDAYVHGRS-FITISKPDPQLDLGWDQNV 139 (486) T ss_pred HHHHHHhhhcccceec--CCC-chhH----HHHHHHHHhc-ChhHHHHHHHHHHhhcCce-EEEEecCCcccccccCCCe Confidence 2222222222233432 222 2222 2344555443 4676666655 68889987 5666643211100 0 Q ss_pred eeeeeecCcee--Eecc---------------cC-----------CceEEeccCCCCc-----e--eecCCCeEEEeecC Q lcl|Aclame:pro 151 LAFHHRPQSWF--QLNP---------------ED-----------QNELRLRDNSPAG-----E--ALQPFGWIIHRPRA 195 (526) Q Consensus 151 ~~l~~r~~~~f--~~~~---------------~~-----------~~~l~~~~~~~~g-----~--~lp~~k~i~~~~~~ 195 (526) ..+...+|++. .+++ ++ .....+...+... . .+..--++.+.++. T Consensus 140 ~~i~~~~p~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~~~n~~ 219 (486) T protein:vir:42 140 PIIRVEPPTRMHAEIDPRINRVSKAIRVAYDKEGNEIQAATLYTPMETIGWFRADGEWAEWFNVPHGLGVVPVVPLPNRT 219 (486) T ss_pred eEEEEecccceEEEEeCCCCCeEEEEEEEEecCCCeEEEEEEEcCCcEEEEEecCCcEEeecceecCCCCceEEEecccc Confidence 01112222111 0110 00 0011111111110 0 11112345567777 Q ss_pred CCCccccchhHHH-HHHHHHHHHHHHHHHHHHHHHcCCceEEEecC--CCCC-HHHHHHHHHHHHHhhcCeEEEecCCce Q lcl|Aclame:pro 196 RSGYVARSGLFRV-LAWPYLFRHYATSDLAEMLEIYGLPIRLGKYP--PGTA-DEEKATLLRAVTGLGHAAAGIIPETMA 271 (526) Q Consensus 196 ~~g~p~g~gLl~~-~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~--~~~~-~~e~~~l~~al~~~~~~~~~iip~~~~ 271 (526) ..+.++|.|-+.. +....=-=...+.+.+...+-|..|.++.+-- .... ++++.. .+-....+...++| +.+ T Consensus 220 ~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~e~~a~p~~~i~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~ 295 (486) T protein:vir:42 220 RLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVDSETGQ---TLFDAYLARILAFE-DAE 295 (486) T ss_pred ccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchHHHhhcCCcccccccccccc---chhhhhhchhcccC-CCC Confidence 7888899887764 32222122334567777888999998886621 1110 111110 01111222333333 345 Q ss_pred EEEeecCCCChHHHHHHHHHHHHHHHHHHhchh--hhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 272 IDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGT--LTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWP 349 (526) Q Consensus 272 ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqt--ltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~ 349 (526) .+|.+-...+.+.|.+.++-+-.++|...--+. +... .++..+.-|+. ....-.......-.+.+...|.+ +++. T Consensus 296 ~~~~q~~~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~-~~n~~Sg~Al~-~~~~~l~~ka~~~~~~f~~~l~~-~~~l 372 (486) T protein:vir:42 296 GKIQQFSAAELANFTNALDQIAKQVAAYTGLPPQYLSTA-ADNPASAEAIR-AAESRLIKKVERKNLMFGGAWEE-AMRI 372 (486) T ss_pred ceEEeecccCHHHHHHHHHHHHHHHhcccCCCHHHhccc-cCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHH Confidence 677665444555555555555555554321111 1100 01111112222 22222333344445566666643 5554 Q ss_pred HHHhcCCCCCCcc-cceeEEecCccccCHHHHHHHHHHHHhCCC-cCCHHHHHHHhCCCCCCccchhcc----cCCCcc- Q lcl|Aclame:pro 350 LLVLNRPGSPDVR-RAPRLVFDLREQADITSMAQSIPALVNVGL-EIPSAWVYDKLGIPQPAKNEPVLR----SAAQPA- 422 (526) Q Consensus 350 l~~~Nf~~~~~~~-~~p~~~~~~~e~edl~~~a~~~~~l~~~G~-~v~~~~~~e~~Glp~~~~~e~~~~----~~~~~~- 422 (526) ++.+-.+...... .--+++|....+.++.+.|+++.+|+..|. .++.+.+++.+|+-+....+ +.. ...... T Consensus 373 ~~~~~~~~~~~~d~~~i~v~w~~~~~~s~~~~ad~~~kl~~~~~g~~s~et~~~~lg~~~d~~~e-~~~~~~e~~~~~~~ 451 (486) T protein:vir:42 373 AYRIMKGGDVPPDMLRMETVWRDPSTPTYAAKADAATKLYGNGQGVIPRERARIDMGYSVKEREE-MRRWDEEEAAMGLG 451 (486) T ss_pred HHHHhcCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHhcccCCCCHHHHHhcCCCChhHHHH-HHHHHHHHHHHHHH Confidence 4444322211111 123567777778899999999999998753 37889999999985433221 110 000000 Q ss_pred -------ccccccc--ccccccccccccccccccc Q lcl|Aclame:pro 423 -------ILSRQHG--QRVAALATIVGPRYGDQQA 448 (526) Q Consensus 423 -------~~~~~~~--~~~~~~~~~~~~~~~~~~~ 448 (526) ..+...+ ..+....+.++......+. T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (486) T protein:vir:42 452 LLGTMVDADPTVPGSPSPTAPPKPQPAIESSGGDA 486 (486) T ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCcccCCCCCCC Confidence 0000000 0000000000000000001 No 197 >protein:vir:94742 Length: 409 # NCBI annotation: putative portal protein # Family: family:all:524 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996701;genbank:gi:45597416;genbank:GeneID:2767966 Probab=97.57 E-value=4.4e-05 Score=44.49 Aligned_cols=355 Identities=13% Similarity=0.016 Sum_probs=152.8 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCC-------CHHHHHHHHHHHHhccHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQG-------NLQAQAELFMDMEERDAH 73 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g-------~~~~~~~l~~~m~~~D~~ 73 (526) |- + ..+..+.+.+..+..+.. ++.+..+. .+. -+..+...++ . T Consensus 1 ~~----------------~---~~i~~L~~~~~~~~~r~~---~~~~yY~g-~~~~~~~~~~~p~~~~~~~~-------~ 50 (409) T protein:vir:94 1 MT----------------E---KGIGYLRFKLSVHKRRAE---MRYDQYAM-KYVDRFKGITIPQALSQQYR-------S 50 (409) T ss_pred CC----------------H---HHHHHHHHHHHHHhHHHH---HHHHHhcc-cCchhhcChhhhHHHHHHHh-------h Confidence 11 0 111112222221111110 11111110 000 0001111111 0 Q ss_pred HHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEee Q lcl|Aclame:pro 74 LFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLA 152 (526) Q Consensus 74 v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~ 152 (526) +..-..+....+..+ ..+.--..++ .. +.+++... .|+.....+. +|+-||.|+. ++|...+|... T Consensus 51 v~nw~~~iVds~a~r-l~~~Gf~~~d---~~----l~~i~~~N-~ld~~~~~~~~~aliyG~sf~-~v~~~~dg~~~--- 117 (409) T protein:vir:94 51 ILGWCAKGVDSLADR-LVFREFENDD---FT----VNEIFEEN-NPDIFFDSAVLSSLIASCSFT-YISKGENDAVR--- 117 (409) T ss_pred hcchhHHHHHHhHhh-cccCcccCCc---hH----HHHHHHhc-ChhHHHHHHHHHHHHhcceeE-EEecCCCCceE--- Confidence 001111111222111 0011001111 11 34555432 4666555555 7999999654 55765555433 Q ss_pred eeeecCcee--EecccCCce-------------------EEe-------ccCCCCce----eecCCCeEEEeecCCCCcc Q lcl|Aclame:pro 153 FHHRPQSWF--QLNPEDQNE-------------------LRL-------RDNSPAGE----ALQPFGWIIHRPRARSGYV 200 (526) Q Consensus 153 l~~r~~~~f--~~~~~~~~~-------------------l~~-------~~~~~~g~----~lp~~k~i~~~~~~~~g~p 200 (526) +.+++|++. .+|+..+.. +.+ ...+.... ++..--++.+.++...+.| T Consensus 118 i~~~sp~~~~~i~D~~~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~vPvV~f~n~~~~~~~ 197 (409) T protein:vir:94 118 LQVIEAVNATGIIDPITGLLTEGYAVLERDENNNVVLEAHFLPDRTDYYYRDSRNNISIANPTGHPLLVPIIHRPDAVRP 197 (409) T ss_pred EEEeccceEEEEEecCCCceeeeEEEEEecCCCceEEEEEEecCcEEEEEecCceeEeeeCCCCCcceEEeccccccccc Confidence 333333221 112211110 000 00111111 1111224556667777889 Q ss_pred ccchhH-HHHHHHHHHHHHHHHHHHHHHHHcCCceEEEec--CCCCCHHHHHHHHHHHHHhhcCeEEEecCC---ceEEE Q lcl|Aclame:pro 201 ARSGLF-RVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKY--PPGTADEEKATLLRAVTGLGHAAAGIIPET---MAIDF 274 (526) Q Consensus 201 ~g~gLl-~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~--~~~~~~~e~~~l~~al~~~~~~~~~iip~~---~~ie~ 274 (526) +|.|-+ +.+....=--+..+..-+.-.|-|+.|.++.+- +.+.. .+.+. ...+....+|++ ..+++ T Consensus 198 ~G~s~I~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~d~d~~~---~~~~~-----~~~~~i~~~~~d~dg~~~~v 269 (409) T protein:vir:94 198 FGRSRITRSGMYWQSNAKRTLERADVTAEFYSFPQKYVTGLSDDAEP---METWK-----ATVSSMLQFTKDEDGDKPTL 269 (409) T ss_pred cCccccchhHHHHHHHHHHHHHHHHHHHHHhcChhheeEecCCCCcc---cchhh-----hhHHHhhcCCCCCCCCCceE Confidence 998855 444433333344455566677889999887652 11111 11111 122334556644 33566 Q ss_pred eecCCCChHHHHHHHHHHHHHHHHHHhchhhhccc--ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 275 QQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTT--SQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLV 352 (526) Q Consensus 275 ~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~--~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~ 352 (526) -+-..++...|...++.+-+++|-.- +=+...-. .++..+.-|+..-+.. .....+.-.+.+...+. ++++..+. T Consensus 270 ~q~~~~~l~~~~~~l~~~~~~~a~~t-~lP~~~lg~~~~NpsSa~Al~a~~~~-L~~~a~~k~~~fg~~~~-~~~rla~~ 346 (409) T protein:vir:94 270 GQFTQPSMSPFTEQLRTAAAGFAGET-GLTLDDLGFVSDNPSSVEAIKASHEN-LRLAGRKAQRSLGAGLL-NVAYLAAC 346 (409) T ss_pred EecCCCChhHHHHHHHHHHHHHhhhc-CCCHHHhccccCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHH Confidence 55555566677777777777777542 21111110 0111122233322222 22333444556677775 46665544 Q ss_pred h-cCCCCCCcc-cceeEEecCccccC---HHHHHHHHHHHHhCCCcC-CHHHHHHHhCCCCCC Q lcl|Aclame:pro 353 L-NRPGSPDVR-RAPRLVFDLREQAD---ITSMAQSIPALVNVGLEI-PSAWVYDKLGIPQPA 409 (526) Q Consensus 353 ~-Nf~~~~~~~-~~p~~~~~~~e~ed---l~~~a~~~~~l~~~G~~v-~~~~~~e~~Glp~~~ 409 (526) + +..+..+.+ .-.++.|....+.+ +...|+.+.||+..|..+ +.+.+++.+|+..++ T Consensus 347 i~~~~~~~~~~~~~~~v~W~p~~~~~~~~~a~~aDa~~Kl~~ag~~~~~~~~~~~~lG~~~~d 409 (409) T protein:vir:94 347 LRDDAPYLREQFRKTKPKWEPLFEADASMLSLIGDGAIKLNQAIPEFINKDTIRDLTGIEGGE 409 (409) T ss_pred HhCCCCccccccccceEEeccCCCcchHHHHHHHHHHHHHHHhcccccchhHHHHHcCCCCCC Confidence 4 322211111 12355565333333 456788999999999654 568999999998766 No 198 >protein:vir:9751 Length: 422 # NCBI annotation: putative structural protein # Family: family:all:524 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795513;genbank:gi:28876291;genbank:GeneID:1257832 Probab=97.50 E-value=5.5e-05 Score=43.96 Aligned_cols=367 Identities=10% Similarity=-0.016 Sum_probs=155.0 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcc------cCCCHHHHHHHHHHHHhccHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEA------EQGNLQAQAELFMDMEERDAHL 74 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a------~~g~~~~~~~l~~~m~~~D~~v 74 (526) |-. ..+-.+.+.+..+..+. .++.+..+.. ...-...+..+++ + + T Consensus 1 m~~-------------------~~i~~L~~~~~~~~~r~---~~~~~yy~g~~~~~~~~~~~p~~~~~~~~-~------v 51 (422) T protein:vir:97 1 MNY-------------------MGMGYLRRKLALFKTGV---DKRYRYYAMDDRDDTRSIVMPNNVREMYR-S------V 51 (422) T ss_pred CCh-------------------HHHHHHHHHHHHHHHHH---HHHHHHHhcCCChhhcCccccHHHHHHHH-h------h Confidence 110 11111112221111111 1111111100 0000011111111 0 1 Q ss_pred HHHHHHHHHHHhc----CCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeE Q lcl|Aclame:pro 75 FAEMSKRKRAILG----LDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWM 149 (526) Q Consensus 75 ~s~l~~Rk~av~~----~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~ 149 (526) ..-..+....+.. -.|++ ++ .. +.+++... .|+.....+. +|+-||.|+.=+..+.++|... T Consensus 52 ~nw~~~~Vd~~a~rl~~~Gf~~-----~d---~~----l~~~w~~N-~ld~~~~~~~~~al~~G~sf~~v~~~~~~~~p~ 118 (422) T protein:vir:97 52 LEWTAKGVDSLADRIIFREFTN-----DD---FN----AWEIFKAN-NPDIFFDTAIQSALIASCCFVYIMPGAEDGLPK 118 (422) T ss_pred cchhHHHHHHHHhccccceeeC-----Cc---hh----HHHHHHhc-ChHHHHHHHHHHHHHhcceeEEEeeCCCCCeeE Confidence 1111222222211 11111 11 11 33445432 3666665544 7999999766553333344422 Q ss_pred EeeeeeecCcee--EecccCCc--------------e----E--------EeccCCCCc---eeecCCCeEEEeecCCCC Q lcl|Aclame:pro 150 PLAFHHRPQSWF--QLNPEDQN--------------E----L--------RLRDNSPAG---EALQPFGWIIHRPRARSG 198 (526) Q Consensus 150 ~~~l~~r~~~~f--~~~~~~~~--------------~----l--------~~~~~~~~g---~~lp~~k~i~~~~~~~~g 198 (526) +..++|++. .+|+..+. . . ..++++... .++..--++.+.++...+ T Consensus 119 ---i~~~sp~~~~~i~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~ 195 (422) T protein:vir:97 119 ---MQVIEASKATGILDPTTFLLTEGYAILESDSNGNPTLEAYFTDKDIWYYPKKGKPYNIKNPTGHPLLVPIIHRPDAV 195 (422) T ss_pred ---EEEechhhEEEEEeCCCCcceeeEEEEEecCCCcEEEEEEEcCceEEEEcCCCccccccCCCCCcceEEecccCCCc Confidence 333333321 11211110 0 0 001111000 011122346666777888 Q ss_pred ccccchhH-HHHHHHHHHHHHHHHHHHHHHHHcCCceEEEec--CCCCCHHHHHHHHHHHHHhhcCeEEEecCCc---eE Q lcl|Aclame:pro 199 YVARSGLF-RVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKY--PPGTADEEKATLLRAVTGLGHAAAGIIPETM---AI 272 (526) Q Consensus 199 ~p~g~gLl-~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~--~~~~~~~e~~~l~~al~~~~~~~~~iip~~~---~i 272 (526) .|+|.|-+ +.+....=-=+..+..-..-.|-|+.|.++.+- +.+...+..+. .-+....+|.+. .+ T Consensus 196 ~~~G~s~I~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~d~d~~~~~~~~~--------~~~~i~~~~~de~~~~~ 267 (422) T protein:vir:97 196 RPFGRSRITKAGMYHQKAAKRTLERAEVTAEFYSFPQKYVLGMDPDAKPMEKWRA--------TVSTLLEISKDEDGDKP 267 (422) T ss_pred cccCccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhcccCcccccCchhhh--------hhhhhhccCCCCCCCcc Confidence 89998854 444433333344455556677888999777542 21111111111 123455566543 35 Q ss_pred EEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 273 DFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQS-GGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLL 351 (526) Q Consensus 273 e~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~-~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~ 351 (526) +|-+-..++...|.+.++.+-++||-.---+ ...-.+.+ +..|...-.....-....++.-.+.+...+. ++++..+ T Consensus 268 ~v~q~~~~~l~~~~~~l~~~~~~~a~~s~lP-~~~lg~~~~NpsSa~Ai~a~~~~L~~ka~~k~~~fg~~l~-~~~rla~ 345 (422) T protein:vir:97 268 TVGQFTTASMAPFMEHLKMYASLFAGGSGLT-LDDLGFPSDNPSSVESIKAAHENLRAAGRKAQRSFSSGFL-NVAYIAV 345 (422) T ss_pred eeeecCCCChhHHHHHHHHHHHHHhcccCCC-HHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH Confidence 6655455566677777777777776542111 11100000 1122211122333344445555677777885 4666666 Q ss_pred HhcCCCCCCccc--ceeEEecCccccC---HHHHHHHHHHHHhCC-CcCCHHHHHHHhCCCCCCccchhcccCCCcccc Q lcl|Aclame:pro 352 VLNRPGSPDVRR--APRLVFDLREQAD---ITSMAQSIPALVNVG-LEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAIL 424 (526) Q Consensus 352 ~~Nf~~~~~~~~--~p~~~~~~~e~ed---l~~~a~~~~~l~~~G-~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~ 424 (526) .+..+....+.. -..+.|....+.+ +...|+.+.||+.+| ...+.+.+.+.+|+..+...-.-+... .+.. T Consensus 346 ~~~~~~~~~~~~~~~~~~~w~p~~~~~~~s~a~~aDa~~Kl~~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~--~~d~ 422 (422) T protein:vir:97 346 CLRDEFPYLRNQFMDTVIKWEPLFEADANMLTLVGDGAIKLNQAIPGFMDADVIRDLTGVKGADKPIPAITEV--TTDG 422 (422) T ss_pred HHhcCCcccchhhccceEEEccCCCCChHHHHHHHHHHHHHHhhccccccHHHHHHHcCCCchhHHHHHHHhh--hccC Confidence 554322211111 1245555333444 566788899999986 337788999999996543322211111 1111 No 199 >protein:vir:106571 Length: 499 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958580;genbank:gi:41179240;genbank:GeneID:2717107 Probab=97.44 E-value=6.8e-05 Score=43.44 Aligned_cols=417 Identities=12% Similarity=0.086 Sum_probs=180.1 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHH-----HHHHHHHhccHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQA-----ELFMDMEERDAHLF 75 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~-----~l~~~m~~~D~~v~ 75 (526) |+..+... -+......+.-.+.+-+..|-.+ ..++.. +..--.|.-.... .-...-.-...+.. T Consensus 1 ~~~~~~~~-------~~~~~~~~~~~~i~~~i~~~~~~---~~~~~~-l~~Yy~g~~~i~~~~~~~~~~~~~ki~~n~~~ 69 (499) T protein:vir:10 1 MAVVIDKD-------LLDDVNEPNIEAINYAIRELQNR---KKRLDK-LSDYYNGKQEIEKHEFDNATVEAANVMVNHAK 69 (499) T ss_pred Cccchhhh-------HHhhhhcCCHHHHHHHHHHHHHH---HHHHHH-HHHHhccccchhcCCcCcCCCCcceeecchHH Confidence 55322221 00000000111111222222110 111111 1111111100000 00000000245666 Q ss_pred HHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEE---- Q lcl|Aclame:pro 76 AEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMP---- 150 (526) Q Consensus 76 s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~---- 150 (526) -.+.+...-+.+.+..+...+ ....+.+.+++.+. .|+..+..+. ++.-||.+ .+++|...+|...+ T Consensus 70 ~Iv~~~~~~l~g~p~~~~~~~------~~~~~~l~~~~~~n-~~~~~~~~~~~~~~~~G~~-~~~v~~~~~g~~~~~~~~ 141 (499) T protein:vir:10 70 YITDMNVGFMTGNPVKYVAEK------GKNIDDILEVFNQI-DIHKHDIELEKDLSVFGYG-YELLYLKKTDPISVRDEL 141 (499) T ss_pred HHHHHHhhhhcccCceeecCC------hhHHHHHHHHHhhc-CHhHHHHHHHHHHHhcCce-EEEEEecccccccccccc Confidence 667777777888887776432 12334466666554 4766666655 68889975 45556444332110 Q ss_pred ----------eeeeeecCc-eeEe-ccc-CCce---E--------------------------EeccCCC-----Ccee- Q lcl|Aclame:pro 151 ----------LAFHHRPQS-WFQL-NPE-DQNE---L--------------------------RLRDNSP-----AGEA- 182 (526) Q Consensus 151 ----------~~l~~r~~~-~f~~-~~~-~~~~---l--------------------------~~~~~~~-----~g~~- 182 (526) .++...+|+ .|.+ +.. ++.. + .+...+. .+.. T Consensus 142 ~~~~~~~~~~~~~~~v~p~~~~~v~~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~ 221 (499) T protein:vir:10 142 GNEKLTPNTELKIEVIDPRATVVVCDDTVEHDPLFAVFTQEKKDLEGNTNGYSITVYMPQRIVEYRTKTTMEVSANDPIV 221 (499) T ss_pred cccccccccceEEEEEcccceEEEecCCCCcceEEEEEEEEEeecCCCceEEEEEEEeCCeEEEEEecCCccccCcceec Confidence 112222221 1111 100 0000 0 0000000 0000 Q ss_pred ---ecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHhh Q lcl|Aclame:pro 183 ---LQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLG 259 (526) Q Consensus 183 ---lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~ 259 (526) -.+.+.|=..+- ..++.|.|.+..+....=-=...+..++..++.|+.|+++.+-.....+.+. ...+. T Consensus 222 ~~~~~~~g~vPvv~~--~n~~~~~~d~e~v~~liD~~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~------~~~~~ 293 (499) T protein:vir:10 222 YDGENLFGAVPIIEF--RNNEERQGDFEQLISLIDAYNLLQTDRISDKEAFVDALLVTFGFGLGDDKDD------IQRLK 293 (499) T ss_pred ccccCCCCccceEEe--cCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCccccccch------hhhhh Confidence 001111111111 1356788988887666555566779999999999999999874322221111 11122 Q ss_pred cCeEEEe--cCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 260 HAAAGII--PETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQ 337 (526) Q Consensus 260 ~~~~~ii--p~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~ 337 (526) ......+ +.+.++++++. ......++..++.+.+.|...-....++.+...|+.+.-|+ +....-....+..-.+. T Consensus 294 ~~~~~~~~~~~~~d~~~l~~-~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~gn~Sg~Al-~~~~~~l~~k~~~k~~~ 371 (499) T protein:vir:10 294 RGAIEAPPREEGADIEWLTK-SFDETQVNLLSQSIENDIHKISYVPNMNDEKFMGNVSGEAM-KFKLFGLENLLSIKQRY 371 (499) T ss_pred hcceeccCCCCCCcceEEec-cCCHHHHHHHHHHHHHHHHHHhCcccCCchhhcccchHHHH-HHHHHHHHHHHHHHHHH Confidence 2333333 35567888864 33556789999999999988654444443321111111121 11222222334444566 Q ss_pred HHHHHHHHHHHHHHHh-cCCCCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCC-CCCCcc-chh Q lcl|Aclame:pro 338 LAATLSRDLLWPLLVL-NRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGI-PQPAKN-EPV 414 (526) Q Consensus 338 i~~~ln~~li~~l~~~-Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Gl-p~~~~~-e~~ 414 (526) +...++ ++++.++.+ |..+....-....+.|....+.|..+.++.+.+|. |+ +|.+.+.+.++. +.+..+ +.+ T Consensus 372 ~~~~l~-~~~~li~~~~~~~~~~~d~~~i~i~f~~~~p~n~~e~~~~~~kl~--g~-iS~et~~~~l~~v~d~~~E~~ri 447 (499) T protein:vir:10 372 FFDGLR-RRLKLIQTIVNIKGANDDASGCKISLVANIPSNLSDVVNNVKNAD--GI-IPRKYTYSWLPDVDNPQDVIDEM 447 (499) T ss_pred HHHHHH-HHHHHHHHHHhccCCccccccceEEeCCCCCCCHHHHHHHHHHHh--cc-CChHHHHHhCCCCCCHHHHHHHH Confidence 666674 466666654 32222111123578888899999999999999984 66 898888888755 222211 000 Q ss_pred ccc---------C----CCccccccccc-cccc--ccccccccccccccchH Q lcl|Aclame:pro 415 LRS---------A----AQPAILSRQHG-QRVA--ALATIVGPRYGDQQALD 450 (526) Q Consensus 415 ~~~---------~----~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~ 450 (526) ... . ..+........ .... ..........+.+-... T Consensus 448 ~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (499) T protein:vir:10 448 NQQDAETIKKNQEALRGQDPDRLELEDKQDDSSENDKEAGSNHNQSHRTRAV 499 (499) T ss_pred HHHHHHHHHHHHhhhccCCCCCCCCCCCCcccCCCCCCCccccccCCCCCCC Confidence 000 0 00000000000 0000 00000000000000000 No 200 >protein:vir:8184 Length: 474 # NCBI annotation: gp4 # Family: family:all:524 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817977;genbank:gi:29566411;genbank:GeneID:2700965 Probab=97.43 E-value=6.9e-05 Score=43.40 Aligned_cols=418 Identities=9% Similarity=-0.020 Sum_probs=168.8 Q ss_pred eecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHH---HcccCCCHHHHHHHHHHHHhccHHHHHHHHH Q lcl|Aclame:pro 4 IVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARIL---VEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) Q Consensus 4 ~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l---~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~ 80 (526) |+-.-+ .....+..+....+..+.+.+..+..+..+..++..-- +.....-...+ ..+...-....-+++. T Consensus 1 ~~~~~~--~~~~gl~~~~~~~~~~L~~~~~~~~~~~~~~~~Yy~G~~~~~~~~~~~p~~~----r~~~~v~nw~~~~Vd~ 74 (474) T protein:vir:81 1 MIQQQT--VRIPSLSNDENALINGLLAQIENLRWKNLLRTSYYENKRTIQYVGTLIPPQY----FNLGLVLGWTGKAVDA 74 (474) T ss_pred CcCCCc--CcCCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHhccCCChhhccccccHHH----HHHHhhcChHHHHHHH Confidence 111111 11112333344444444445444432222222221000 00000001111 1111001111112222 Q ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHH-HHhhhhcceeeeEEEeecCCeeEEeeeeeecCc Q lcl|Aclame:pro 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDA-LDGIGHGYSCIELEWALQGREWMPLAFHHRPQS 159 (526) Q Consensus 81 Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~-lda~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~ 159 (526) ....+.--.|.+ + + ++.++.. +.+++... .|+.....+ .+|+-||.|+ .++|.-.++.-.+ .+..++|+ T Consensus 75 ~a~rl~~~Gf~~-~-d-~~~~~~~----l~~iw~~N-~ld~~~~~~~~~al~~G~sf-~~V~~~~d~~~~~-~i~~~sp~ 144 (474) T protein:vir:81 75 LARRCNLEGFVW-P-D-GDLDSLG----GTEVVDDN-HLLSEIDSAIVAAMQHGPAF-LINTVGEDDEPEA-LIHVKDAS 144 (474) T ss_pred HHhhhcccceEC-C-C-CCccchH----HHHHHHhc-ChhHHHHHHHHHHHhhCcee-EEEecCCCCCcee-EEEEeccc Confidence 211111133432 2 2 2222222 34555432 466655554 4799999996 5566433332211 12222222 Q ss_pred eeE--ecccCC--------------c-----eE-------E-eccCCCC-------ceeecCCCeEEEeecCCCCccccc Q lcl|Aclame:pro 160 WFQ--LNPEDQ--------------N-----EL-------R-LRDNSPA-------GEALQPFGWIIHRPRARSGYVARS 203 (526) Q Consensus 160 ~f~--~~~~~~--------------~-----~l-------~-~~~~~~~-------g~~lp~~k~i~~~~~~~~g~p~g~ 203 (526) +.. +|+..+ + .+ . .+.++.. ..++. .-++.+.++...+.|+|. T Consensus 145 ~~~~~~D~~~~~~~~al~~~~~~~~g~~~~~~ly~~~~~~~~~~~~~~~~w~~~~~~~~~g-vPvV~~~n~~~~~~~~G~ 223 (474) T protein:vir:81 145 EATGEWNRRRRGLNNLLSIIDKDKEGKVLSLALYLDNETVTAQRDKATLKWQVDRDEHVYG-VPAQVLPYKPAPKRPFGQ 223 (474) T ss_pred eEEEEEeCCCCcceeeeEEEEEcCCCcEEEEEEEeCCcEEEEEEcCccceeeeccCCCCCC-cceEEecccccccCcCCc Confidence 111 111110 0 00 0 0111110 00111 125666777777888887 Q ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEe--cCCCCCHH------HHHHHHHHHHHhhcCeEEEecCCceEEE Q lcl|Aclame:pro 204 GL-FRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGK--YPPGTADE------EKATLLRAVTGLGHAAAGIIPETMAIDF 274 (526) Q Consensus 204 gL-l~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk--~~~~~~~~------e~~~l~~al~~~~~~~~~iip~~~~ie~ 274 (526) |= .+.+....=-=+..+..-..-.|-|+.|.++.. .++...++ -.+.....+-.+..+.=+-+|.....+| T Consensus 224 s~i~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~~~~~~~d~d~~~~~~~~~~~~~i~~~~~d~d~~~~~~~~~~~ 303 (474) T protein:vir:81 224 SRITKPMMGLQDAGVRELARREGHMDVFSYPEFWLLGADESALKNADGTIKSVWEARLGRIKGLPDDADADIPQLARADV 303 (474) T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhcchhheeecCChhhcccccccccchhhhhHHHHhcCCCcccccccccccccc Confidence 73 344433332333344555667788999988764 22211111 1122223333333333333444444555 Q ss_pred eecCCCChHHHHHHHHHHHHHHHHHHhchhhhccc-c-cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 275 QQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTT-S-QSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLV 352 (526) Q Consensus 275 ~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~-~-~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~ 352 (526) -+-..++...|...++.+-++||-.-.-+.-..+. + ++..+.-|+...+.. .....+.-.+.+...+. ++++..+. T Consensus 304 ~q~~~a~l~~~~~~l~~~~~~~a~~t~iP~~~lG~~~~~np~SaeAi~a~~~~-l~~kae~k~~~fg~~l~-~~~rla~~ 381 (474) T protein:vir:81 304 KQFPAASPDAHWSDINGLAKLFAREASLPDTAVAISGLSNPTSAESYDASQYE-LIAEAEGAVDDFTPALR-KAFIRALA 381 (474) T ss_pred cccCCCChhHHHHHHHHHHHHHHhhhCCCHHHhcccccccccHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHH Confidence 55445556667777776666666532111111110 1 122223344333333 33344555667777785 56776666 Q ss_pred hcC--CCCCCc--ccceeEEecCccccCHHHHHHHHHHHHhCCCc-CCHHHHHHHhCCCCCCccchhcccCCCccccccc Q lcl|Aclame:pro 353 LNR--PGSPDV--RRAPRLVFDLREQADITSMAQSIPALVNVGLE-IPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQ 427 (526) Q Consensus 353 ~Nf--~~~~~~--~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~-v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~ 427 (526) +.. ...... ..--+++|...+..++...|++..||+.+|.. ++.+-+++.+|+.+.+-.. ... ....+..... T Consensus 382 i~~~~~~~~~~~~~~~~~v~W~d~~~~s~a~~aDa~~Kl~~a~~~~~~~~~~~~~lg~t~~~i~~-~~~-~~~~~~~~~~ 459 (474) T protein:vir:81 382 MKNKVAIDEIPDEWKSIDAKWRDPRYLSKSAQADAGMKQLAAVPWLAETEVGLELIGLTPQQARR-AMA-DKRRVQGRGT 459 (474) T ss_pred HhCCCCccccchhhccceeEecCCCccCHHHHHHHHHHHHhcccCCCcHHHHHhhcCCCHHHHHH-HHH-HHHHHhHHHH Confidence 632 211111 11224566667778889999999999999854 4556778889996442211 100 0000000000 Q ss_pred ccccccccccccccccccc Q lcl|Aclame:pro 428 HGQRVAALATIVGPRYGDQ 446 (526) Q Consensus 428 ~~~~~~~~~~~~~~~~~~~ 446 (526) ...... ...+....+ T Consensus 460 ~~~l~~----~~~~~~~aq 474 (474) T protein:vir:81 460 LQALID----RSNNGATAQ 474 (474) T ss_pred HHHHHh----cCCCCCCCC Confidence 000000 000000000 No 201 >protein:vir:1634 Length: 409 # NCBI annotation: Structural protein # Family: family:all:524 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695055;genbank:gi:23455746;genbank:GeneID:955506 Probab=97.25 E-value=0.00012 Score=42.15 Aligned_cols=359 Identities=13% Similarity=0.033 Sum_probs=153.3 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHH---HHcccCCCHHHHHHHHHHHHhccHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARI---LVEAEQGNLQAQAELFMDMEERDAHLFAE 77 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---l~~a~~g~~~~~~~l~~~m~~~D~~v~s~ 77 (526) |- + ..+..+.+.+..+..+..+..++..- ++.....-+..+...++ .+..- T Consensus 1 ~~----------------~---~~i~~L~~~~~~~~~r~~~~~~yY~g~~~~~~~~~~~p~~~~~~~~-------~v~nw 54 (409) T protein:vir:16 1 MT----------------E---KGIGYLRFKLSVHKRRAEMRYEQYAMKHVDRFKGITIPQALSQQYR-------SILGW 54 (409) T ss_pred CC----------------H---HHHHHHHHHHHHHhHHHHHHHHHHhccCchhhcchhhhHHHHHHHh-------hhcCh Confidence 11 1 11111122221111111111111000 00000000000111110 00011 Q ss_pred HHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecCCeeEEeeeeee Q lcl|Aclame:pro 78 MSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHR 156 (526) Q Consensus 78 l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r 156 (526) ..+....+..+ ..+.--..++ . -+.+++... .|+.....+. +|+-||.|+. ++|.-.+|... +..+ T Consensus 55 ~~~iVds~a~r-l~~~Gf~~~d---~----~l~~i~~~N-~ld~~~~~~~~~al~yG~sf~-~v~~~~dg~~~---i~~~ 121 (409) T protein:vir:16 55 CAKGVDSLADR-LVFREFENDD---F----TVNEIFEEN-NPDIFFDSTVLSALIASCSFT-YISKGENDAVR---LQVI 121 (409) T ss_pred hHHHHHHhHhh-cccccccCcc---h----HHHHHHHhc-ChhHHHHHHHHHHHHhCceeE-EEecCCCCceE---EEEE Confidence 11111122110 0011001111 1 134555443 4666665544 7999999765 56765555433 2233 Q ss_pred cCcee--EecccC---------------Cc----eEEecc-------CCCCceee-cCC---CeEEEeecCCCCccccch Q lcl|Aclame:pro 157 PQSWF--QLNPED---------------QN----ELRLRD-------NSPAGEAL-QPF---GWIIHRPRARSGYVARSG 204 (526) Q Consensus 157 ~~~~f--~~~~~~---------------~~----~l~~~~-------~~~~g~~l-p~~---k~i~~~~~~~~g~p~g~g 204 (526) +|++. .+|+.. +. .+.+.+ .+..+... .+. -++.+.++..-+.|+|.| T Consensus 122 sP~~~~~i~D~~~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~~~~~~~~G~s 201 (409) T protein:vir:16 122 EATNATGIIDPITGLLTEGYAVLERDENNNVVLEAHFLPDRTDYYYRDSRNNISIANPTGNPLLVPIIHRPDAVRPFGRS 201 (409) T ss_pred cccceEEEeecccccceeeeEEEEecCCCceEEEEEEecCcEEEEEecCccccceecCCCCcceEEecccccccccCCcc Confidence 33211 111110 00 000011 11111111 122 256666677777889888 Q ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHcCCceEEEec--CCCCCHHHHHHHHHHHHHhhcCeEEEecCC---ceEEEeecC Q lcl|Aclame:pro 205 LF-RVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKY--PPGTADEEKATLLRAVTGLGHAAAGIIPET---MAIDFQQAA 278 (526) Q Consensus 205 Ll-~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~--~~~~~~~e~~~l~~al~~~~~~~~~iip~~---~~ie~~~a~ 278 (526) -+ +.+....=-=+..+..-..-.|-|+.|.++.+- +.+...+ . + ....+....+|++ ..+++-+-. T Consensus 202 eI~~~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~d~d~~~~~---~-~----~~~~~~i~~~~~d~~g~~~~v~q~~ 273 (409) T protein:vir:16 202 RITRSGMYWQSNAKRTLERADVTAEFYSFPQKYVTGLSDDAEPME---T-W----KATVSSMLQFTKDEDGDKPTLGQFT 273 (409) T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhcChhheeEecCCCCCccc---h-h----hhhhhHhhccCCCCCCCCceEEecC Confidence 44 444433333334455555677889999887652 1111111 1 1 1122345556643 345665555 Q ss_pred CCChHHHHHHHHHHHHHHHHHHhchhhhccc--ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c Q lcl|Aclame:pro 279 QGSSEPFLAMMRQSEDAISKAVLGGTLTSTT--SQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVL--N 354 (526) Q Consensus 279 ~~~~~~~~~li~~~d~~Isk~ilGqtltt~~--~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~--N 354 (526) .++...|...++.+-+++|-.- +=+...-. .++-.+.-|+..-+. -.....+.-.+.+...+. ++.+..+.+ | T Consensus 274 ~~~l~~~~~~l~~~~~~~a~~s-~lP~~~lg~~~~NpsSa~Ai~a~~~-~L~~ka~~k~~~fg~~l~-~~~rla~~~~~~ 350 (409) T protein:vir:16 274 QPSMSPFTEQLRTAAAGFAGET-GLTLDDLGFVSDNPSSVEAIKASHE-NLRLAGRKAQRSLGAGLL-NVAYLAACLRDD 350 (409) T ss_pred CCChhHHHHHHHHHHHHHhhhc-CCCHHHcccccCchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHhcC Confidence 5666678888887778877642 21111110 111012223332222 222333444566677774 566665554 2 Q ss_pred CCCCCCcccceeEEecCccc---cCHHHHHHHHHHHHhCCCcC-CHHHHHHHhCCCCCC Q lcl|Aclame:pro 355 RPGSPDVRRAPRLVFDLREQ---ADITSMAQSIPALVNVGLEI-PSAWVYDKLGIPQPA 409 (526) Q Consensus 355 f~~~~~~~~~p~~~~~~~e~---edl~~~a~~~~~l~~~G~~v-~~~~~~e~~Glp~~~ 409 (526) ++...+...--++.|....+ ..+...|+++.||+..|..+ +.+.+++.+|+..++ T Consensus 351 ~~~~~~~~~~~~v~W~~~~~~~~~s~a~~aDa~~Kl~~a~~~~~~~~v~~~~~g~~~~d 409 (409) T protein:vir:16 351 VPYLREQFSKTKPKWEPLFEADASMLSLIGDGAIKLNQAIPEFINKDTIRDLTGIKGAE 409 (409) T ss_pred CCccchhhccceEEecCCCCcchhhHHHHHHHHHHHHhhcccccchhHHHHhccCCCCC Confidence 22211111112455654333 33678899999999999655 467889999998765 No 202 >protein:vir:78907 Length: 518 # NCBI annotation: gp3 # Family: family:all:4147 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468843;genbank:gi:157325445;genbank:GeneID:5601904 Probab=97.14 E-value=0.00015 Score=41.49 Aligned_cols=398 Identities=10% Similarity=0.011 Sum_probs=164.2 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhh---cccCHHHHHHHHHcccCCCHHHHH------HHHHHHHh-- Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPA---KGLTPAKLARILVEAEQGNLQAQA------ELFMDMEE-- 69 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~l~~a~~g~~~~~~------~l~~~m~~-- 69 (526) |+. ...+.+.+..|.. .+...++....++-.. ++...+. .++..+.. T Consensus 1 ~~~---------------------~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~ 58 (518) T protein:vir:78 1 MGV---------------------WSVMTRFIKGWLNGKPNGSEPELIPKYLPLVP-DNQKEWSKDSYLTSLWAQGYVPT 58 (518) T ss_pred Ccc---------------------hhhHHHHHHHhhcCCCCccchhccHHHhhhcc-cchhhhhhhhhhhhhcccCCCCc Confidence 332 0111111111110 0011122222222221 1211110 01111100 Q ss_pred -ccH--H--HHH-HHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHH-HHhhhhcceeeeEEEe Q lcl|Aclame:pro 70 -RDA--H--LFA-EMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDA-LDGIGHGYSCIELEWA 142 (526) Q Consensus 70 -~D~--~--v~s-~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~-lda~~~G~s~~Ei~w~ 142 (526) .+- | +.+ +..+--+-|.+-+-+|...+.+..+++...+++.+++.+. .|...+... ..+...|=.++-..|. T Consensus 59 ~~~~~~~~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~d~e~~~~~l~~il~~n-~f~~~~~~~~e~a~a~G~~~~k~~~d 137 (518) T protein:vir:78 59 VHDKLMNSGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRID-NFDSKSVKIVELAGGSGVSAVKINIL 137 (518) T ss_pred cccccccCChHHHHHHHHHHhhcCCCceEEecCccccCcHHHHHHHHHHHHhc-cHHHHHHHHHHHhhccCceEEEEEEE Confidence 011 1 122 2333334455655566543333333455667888888764 355555544 4688888777766664 Q ss_pred ecCCeeEEeeeeeecCcee------------------------------Eecc----------cCCceE---EeccCCCC Q lcl|Aclame:pro 143 LQGREWMPLAFHHRPQSWF------------------------------QLNP----------EDQNEL---RLRDNSPA 179 (526) Q Consensus 143 ~~~g~~~~~~l~~r~~~~f------------------------------~~~~----------~~~~~l---~~~~~~~~ 179 (526) +|... +.++++..| .++. .+...+ +++.+... T Consensus 138 --~~~~~---i~~v~ad~~~P~~~~g~~~~~~f~~~~~~~~k~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~ 212 (518) T protein:vir:78 138 --NGRPS---ISVHSSSQFWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDK 212 (518) T ss_pred --CCeeE---EEEEcCCeeEEEeecCcEEEEEEEEEeecCCcceeEEEEEeeccccccceeecccceeEEEEEeeecCcc Confidence 22211 111111111 0100 000000 11111111 Q ss_pred cee------------------------e---cCCCeEEEeec-----CCCCccccchhHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 180 GEA------------------------L---QPFGWIIHRPR-----ARSGYVARSGLFRVLAWPYLFRHYATSDLAEML 227 (526) Q Consensus 180 g~~------------------------l---p~~k~i~~~~~-----~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~ 227 (526) +.+ + -+.-|++|.+. ...++|+|.|.+..+.-..-.-...+..|+.-+ T Consensus 213 ~v~~~~~~~~~~l~~~~~~~~~~e~~~~~tg~~~~~~~~~~n~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~ 292 (518) T protein:vir:78 213 TTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREG 292 (518) T ss_pred cccccccccccccccccccccCccceeeccCCccceEEeeccccccccccCCCcCcchHhhhhHHHHHHHHHHHHHHHHH Confidence 000 0 01224454332 235789999999999877777777777777766 Q ss_pred HHcCCceEEEe-----c-CCCCCHHHHHHHHHHHHHhhcCeEEEecCCc--------eEEEeecCCCChHHHHHHHHHHH Q lcl|Aclame:pro 228 EIYGLPIRLGK-----Y-PPGTADEEKATLLRAVTGLGHAAAGIIPETM--------AIDFQQAAQGSSEPFLAMMRQSE 293 (526) Q Consensus 228 E~~G~P~~vgk-----~-~~~~~~~e~~~l~~al~~~~~~~~~iip~~~--------~ie~~~a~~~~~~~~~~li~~~d 293 (526) +. |-+...+- . +.+.....+.. -....+.+..++..+ .|+.++.. =..+.|...++.+- T Consensus 293 ~~-g~~~i~v~~~~l~~~~~~~~~~~~~~-----fd~~~~~y~~i~~~~~~~~~~~~~i~~~~~~-Ir~e~~~~~~~~~l 365 (518) T protein:vir:78 293 EK-TKTKIAASERMFRKKVNKSTDKEEWS-----MNVDEDYFMQFKGTLDAGAKLNDMIQFMQGD-FRDGSYRETMEYFA 365 (518) T ss_pred Hh-CCceeeechhHhccCCCCCCCccccc-----cCCCCceEEEecCcCCCCCccccceeeeecc-cChHHHHHHHHHHH Confidence 65 55543331 1 11111111000 011222333332111 13333321 12244666666666 Q ss_pred HHHHHHH-hc-hhhhcccccccchhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh-c--CCC----CCCcc Q lcl|Aclame:pro 294 DAISKAV-LG-GTLTSTTSQSGGGAFALGQVHNEV--RHDLLASDARQLAATLSRDLLWPLLVL-N--RPG----SPDVR 362 (526) Q Consensus 294 ~~Isk~i-lG-qtltt~~~~~~~gS~a~~~vh~~v--~~~~~~ad~~~i~~~ln~~li~~l~~~-N--f~~----~~~~~ 362 (526) ++|...+ +. +|++.+ ++. ....++..+- .-.-+..-...+...|. +|+..++.+ + ++. ..... T Consensus 366 ~~~~~~~G~s~~tfg~~----~~~-~TATei~s~~~~~~~t~~~~~~~~e~al~-~l~~~i~~l~~~~~~~~~~~~~~~~ 439 (518) T protein:vir:78 366 QKAVSKSGYNPATFNLG----NRE-VKATEIWSLQDATVRKIEKKKRLIQNVYE-QMLWDFLYLLTGGTNNKEKAIMRDE 439 (518) T ss_pred HHHHHhhCCChhhcCcc----ccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcCccccccCCCc Confidence 6665554 22 233221 111 1222333222 12234455566666664 566666543 1 111 11122 Q ss_pred cceeEEecCccccCHHHHHHHHHHHHhCCCcCCHH-HHHHHh-CCCCCCccchhcccCCCcccccccccccccccccccc Q lcl|Aclame:pro 363 RAPRLVFDLREQADITSMAQSIPALVNVGLEIPSA-WVYDKL-GIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVG 440 (526) Q Consensus 363 ~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~v~~~-~~~e~~-Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (526) .-+.|.|+..-.+|.++.++...+++.+|+ ++.+ +++..+ |..+.+..+++..-....+....+.+...+...+..+ T Consensus 440 ~~v~i~f~D~i~~D~~~~~~~~~~~v~aGi-mS~e~~i~~~~~~~~deea~~e~~ri~~E~~~~~~~~p~~~~g~~~~~g 518 (518) T protein:vir:78 440 IRVIIEFPDPMSVNLNELSSTLNNMNSALA-MSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) T ss_pred eeEEEEeCCCCCCCHHHHHHHHHHHHhcCC-CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhcccCCCCCccccCCCCCCC Confidence 347788998889999999999999999998 6655 466543 6544333333321111111111000000000111100 No 203 >protein:vir:80453 Length: 535 # NCBI annotation: BcepGomrgp05 # Family: family:all:584 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210225;genbank:gi:146329917;genbank:GeneID:5123562 Probab=96.82 E-value=0.00032 Score=39.78 Aligned_cols=428 Identities=14% Similarity=0.063 Sum_probs=177.3 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhh----hhhhcccCHH-HH---HH------HHHcccCCCHHH------- Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFA----QHPAKGLTPA-KL---AR------ILVEAEQGNLQA------- 59 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~-~~---~~------~l~~a~~g~~~~------- 59 (526) |++--...-|-++.+.+..|+.+...++--.+. .||.- .... +| ++ .++.++.-.+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~dV~~~hp~y-~a~~~~W~~ird~~~G~~~~r~~g~~YLP~~~~~~~~ 79 (535) T protein:vir:80 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEF-GEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRD 79 (535) T ss_pred CCcchhhhhhhhhhhcccCCCCcCCCCCCCCCCCCCcCCHHH-HHHHHHHHHHHHHhcChHHHHhcccccCCCCCcccCC Confidence 887655555556666666665543322211110 01100 0001 11 11 122222111111 Q ss_pred --HHHHHHHHHhc---cHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHH-hhhhc Q lcl|Aclame:pro 60 --QAELFMDMEER---DAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALD-GIGHG 133 (526) Q Consensus 60 --~~~l~~~m~~~---D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~ld-a~~~G 133 (526) -..-|+..+.+ -+++...+..-...|.+.+..++.+ ..+..+++.+=..-.+++.++++++. ++.|| T Consensus 80 ~E~~~~Y~~rl~rA~~~n~~~~tl~~l~G~vfrk~p~~~~p-------~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G 152 (535) T protein:vir:80 80 EEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLP-------PALEAIVEDIDGEGVSLDQQAKKALGYTMGFG 152 (535) T ss_pred cCCHHHHHHHHhhccCCChhHHHHHHHhchhhcCCcceecc-------HHHHHHHhccCCCCCCHHHHHHHHHHHHHhcC Confidence 01224444433 4455555555555555555544311 22333322220111247888888774 67788 Q ss_pred ceeeeEEEeec----------------------------------CCeeEEeeeeeecCc-----e--------e---Ee Q lcl|Aclame:pro 134 YSCIELEWALQ----------------------------------GREWMPLAFHHRPQS-----W--------F---QL 163 (526) Q Consensus 134 ~s~~Ei~w~~~----------------------------------~g~~~~~~l~~r~~~-----~--------f---~~ 163 (526) .+.+=+.|-.. +|...+..+..+... - + .. T Consensus 153 ~~~iLVD~P~~~~~~t~ade~~~~~rPy~~~y~ae~IinW~~~~v~G~~~Lt~v~lrE~~~~~dd~f~~~~~~q~RvL~~ 232 (535) T protein:vir:80 153 RAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQL 232 (535) T ss_pred eEEEEEeecCCCCcccHHHHHhcCCCcEEEEechhhccCccccccCCccceeEEEEEEEEEecCCCcccceeEEEEEEEe Confidence 77554443211 232112212221110 0 0 00 Q ss_pred cccCCceEE-eccCCC------Cceee------cCCCeEEE--eecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 164 NPEDQNELR-LRDNSP------AGEAL------QPFGWIIH--RPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLE 228 (526) Q Consensus 164 ~~~~~~~l~-~~~~~~------~g~~l------p~~k~i~~--~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E 228 (526) +.++...+. ++..+. .++.. .+..+|-+ .+....+-..+...|..++..-+---....+.-.-+. T Consensus 233 ~~~G~y~v~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IPfv~~~~~~~~~~~~~pPLl~LA~lni~Hy~~ssd~~~il~ 312 (535) T protein:vir:80 233 NAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAF 312 (535) T ss_pred cCCceEEEEEEEeecCCccccccceeecccCCCcccCeeEEEEeecCCCCCCCCccchHHHHHHHHHHhhchhHHHHHHH Confidence 000000100 010000 01111 11222222 2222334444555666666654433333444555667 Q ss_pred HcCCceEEEecCCCCCHHHHHHH-HHHHHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhc Q lcl|Aclame:pro 229 IYGLPIRLGKYPPGTADEEKATL-LRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTS 307 (526) Q Consensus 229 ~~G~P~~vgk~~~~~~~~e~~~l-~~al~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt 307 (526) .-+.|+++..-.. ++..+.. ...--.+|+++++.+|++....+++.+..+.. . ..++..+.+|... .+..+.. T Consensus 313 ~~~~P~l~i~G~~---~~~~~~~~~~~~i~iG~~~~~~lP~~~~~~~~e~~~~~~a-~-~~l~~~e~qM~~l-Ga~ll~~ 386 (535) T protein:vir:80 313 VAGQPTAFFTGLT---KDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP-F-EAMTHKESQMIAM-GANLLVK 386 (535) T ss_pred HhcCceeeeecCc---hhhhhcCCCCcceEecCcccccCCCCCCcceeeeccchhH-H-HHHHHHHHHHHHH-HHHhhcc Confidence 7788888877322 1111111 11113468889999999999999997644333 2 3455555555553 1222222 Q ss_pred ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecC--c-cccCHHHHHHHH Q lcl|Aclame:pro 308 TTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDL--R-EQADITSMAQSI 384 (526) Q Consensus 308 ~~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~--~-e~edl~~~a~~~ 384 (526) ..+ +.+.+.+. ........++..-+..+++.++ +++++++.+-.....+ .-+.|++.. . ..-|.. .++.+ T Consensus 387 ~~~-~~Ta~~a~--~~~~~~~S~L~~~a~~le~al~-~aL~~~A~w~G~~~~~--~~~~i~~n~dF~~~~ld~~-~~~al 459 (535) T protein:vir:80 387 SGG-NRTFGEAQ--QEEASEQSILSACTKNVSMAFR-KALRWANQFQTGIVND--ETVEYNLNTDFPAARLTPN-ERAEL 459 (535) T ss_pred Ccc-cccHHHHH--HHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHcCCccCC--CceEEEeccccccccCCHH-HHHHH Confidence 111 12222222 2233335678888899999996 5889998885422111 113344321 1 222333 45556 Q ss_pred HHHHhCCCcCCHHHHHHHh---CCCCCCc--cchh--cccCCCcccccccccccccccccccc----cccccccchH Q lcl|Aclame:pro 385 PALVNVGLEIPSAWVYDKL---GIPQPAK--NEPV--LRSAAQPAILSRQHGQRVAALATIVG----PRYGDQQALD 450 (526) Q Consensus 385 ~~l~~~G~~v~~~~~~e~~---Glp~~~~--~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 450 (526) .++.+.|. |+.+.+++.+ |+..|.. .++. +..........+......+...+... ......++-. T Consensus 460 l~~~~~G~-Is~et~~~~L~r~gvl~~~~~~eee~~ri~~E~~~~~~~~g~~~d~~~~g~~~~~~~~~~~~~~~~~~ 535 (535) T protein:vir:80 460 ILEWQQGA-ITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) T ss_pred HHHHhcCC-CCHHHHHHHHHhCCCCCcccchHHHHHHHHhhhhhccccCCCCCCCCCCCCCcCcccCCccccccCCC Confidence 67778886 8876555544 7754432 1111 11110000000000000000000000 0000000000 No 204 >protein:vir:7430 Length: 563 # NCBI annotation: gp7 # Family: family:all:6920 # MgeID: mge:147 # MgeName: Barnyard # Cross-refs: genbank:acc:NP_818545;genbank:gi:29566982;genbank:GeneID:1260216 Probab=96.72 E-value=0.00038 Score=39.32 Aligned_cols=443 Identities=12% Similarity=0.071 Sum_probs=183.0 Q ss_pred CCeeecC--CCCccCccccchhhh-----hhhhhhhhhhhhhhhcccC-HHHHHHHHHcccCCCHHHHHHHHHHHHhccH Q lcl|Aclame:pro 1 MAQIVDV--YGNPIRTQQLREPQT-----SRLAGLAKEFAQHPAKGLT-PAKLARILVEAEQGNLQAQAELFMDMEERDA 72 (526) Q Consensus 1 m~~~~~~--~g~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~-~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~ 72 (526) |+. |+ |+.+-+ .+.+..+ .... +-+.+..+-.-..+ -..+..+++ .+ + ...+ .|+ T Consensus 1 m~~--~~~q~~p~~~--~fp~~~a~wV~~~D~~-RlaaY~ly~d~y~n~~~el~~il~-G~--d---r~~~------~~p 63 (563) T protein:vir:74 1 MPY--NHKQYDPAKP--FLRGGDDNIVDENDKN-RVRAYDLYENIYLNSAETLKLVLR-GD--D---SVPI------LMP 63 (563) T ss_pred CCc--cccccCCCcc--cccccccccCCHHHHH-HHHHHHHHHHhhcCchhhhhhhcC-CC--c---eeee------ccc Confidence 765 43 222111 0111000 0000 00111111000000 000011111 11 1 1111 122 Q ss_pred HHHHHHHHHHHHHhcCC--ceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHH-HHHHhhhhcceeeeEEEee---cCC Q lcl|Aclame:pro 73 HLFAEMSKRKRAILGLD--WAVEPPRNASAAEKADADYLHELLLDLEGLEDLLL-DALDGIGHGYSCIELEWAL---QGR 146 (526) Q Consensus 73 ~v~s~l~~Rk~av~~~~--w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~-~~lda~~~G~s~~Ei~w~~---~~g 146 (526) .-+-.+++ ...+++.+ |.|++...+.+..+++..+++.+...- .+..... .-.+|..-|=.|+-+.|+. .++ T Consensus 64 s~r~~V~~-~~~~Lg~~~~~~Ve~~~~de~~~~avq~~Lr~~~~~e-~l~~~~~~~~r~a~vlGDgvf~l~wDp~K~~g~ 141 (563) T protein:vir:74 64 SGRKIVEA-VHRFLGVGFDYLVEPDMGDEGIRQSLNAYFRTTFKRE-AIKAKFTSNKRWGLIRGDAHFYIHADPNKKAGE 141 (563) T ss_pred hHHHHHHH-HHHhcCCCcEEecCccccCcchHHHHHHHHHHHHHHh-hhHHHHHHHHHhhhhhcceeEEEeeccccccCC Confidence 22233444 44555554 555665545555555556666666543 3444333 3448999999999999974 344 Q ss_pred eeEEeeeeee------------------------cC----------ceeEecccCCc----eEEeccC----------C- Q lcl|Aclame:pro 147 EWMPLAFHHR------------------------PQ----------SWFQLNPEDQN----ELRLRDN----------S- 177 (526) Q Consensus 147 ~~~~~~l~~r------------------------~~----------~~f~~~~~~~~----~l~~~~~----------~- 177 (526) +.....+-+. .+ +.|.+-.++.+ ++++.-. + T Consensus 142 R~rv~~vDP~~~fp~~dpd~v~g~~~v~v~~~~~~pdd~~~~~~r~~~~~~~lndeg~~~~~~~~dae~w~lg~wd~r~~ 221 (563) T protein:vir:74 142 RISVDEVDPRQIFLIEDGSTVVGFHMVDIVQDFRSPDDPSKKLARRRTFRRVRNDEGMFTGRISSELTHWTLGNWDDRGA 221 (563) T ss_pred CceEeecCCceeeeccCCCCcccceeeecccCCCCCcchhccceeeeeeeeeeCCCCCccceeeeccchhccccccccCc Confidence 5444332211 00 00011000000 0100000 0 Q ss_pred --------CCc----------eeec-CCCe---EEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceE Q lcl|Aclame:pro 178 --------PAG----------EALQ-PFGW---IIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIR 235 (526) Q Consensus 178 --------~~g----------~~lp-~~k~---i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~ 235 (526) ..+ ..+| |..| +++......+..||.|.|..+.-...--+....+....++..|.|+. T Consensus 222 ~~~~~~~~~~~~~~~~~d~e~~~LP~pi~~iPiv~~~tip~~~s~WG~S~La~ll~~~~eLn~~~Td~s~i~~~tG~pi~ 301 (563) T protein:vir:74 222 ISDEQARRKEQVRSAQHDEEEEELPEPISQLPLYRWRNKPPQNSSWGTSQLEGMETLAYALNQSLTDEDATIVFQGLGMY 301 (563) T ss_pred cchhhhcccchhhhhhhhchhhhccccccCccEEEcCCCCCcccccchhhHHHHHHHHHHHhhhhhHHHHHHHhcCCCeE Confidence 000 1112 2333 33444566788899999999998888888899999999999999987 Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhcCeEEEecCCce---EEEeecCCCChHHHHHHHHHHHH-HHHHHHhch---hhhcc Q lcl|Aclame:pro 236 LGKYPPGTADEEKATLLRAVTGLGHAAAGIIPETMA---IDFQQAAQGSSEPFLAMMRQSED-AISKAVLGG---TLTST 308 (526) Q Consensus 236 vgk~~~~~~~~e~~~l~~al~~~~~~~~~iip~~~~---ie~~~a~~~~~~~~~~li~~~d~-~Isk~ilGq---tltt~ 308 (526) +-.-.. .-+..+-.-+-=+++..+..=+|+..+ ++.+... .+...+..-+++++. .|+..---+ .-|.+ T Consensus 302 vl~~~~---p~d~~~g~~~~w~vgpG~i~El~~~~~~g~l~~v~g~-~~l~~~q~Hm~~l~eral~~~s~tPavA~G~vD 377 (563) T protein:vir:74 302 VTNASA---PVDPNTGELTDWNIGPMQIVEIAGNRNDNYFERVSGV-QDVSPFQDHMKWIDEKGIAEGSGTPEVAIGRVD 377 (563) T ss_pred Eecccc---ccccccccccccccCCceeEeccCCccccceeeecch-hhhHHHHHHHHHHHHHHHHhhccCcceeecccc Confidence 765322 111111111112345555555565433 4444321 122234444444443 333320000 01112 Q ss_pred cccccchhhhhhHHHHHHHHH------H-HHHHHHHHHHHHHHHHHHHHHHhc--------CCCCC-CcccceeEEecCc Q lcl|Aclame:pro 309 TSQSGGGAFALGQVHNEVRHD------L-LASDARQLAATLSRDLLWPLLVLN--------RPGSP-DVRRAPRLVFDLR 372 (526) Q Consensus 309 ~~~~~~gS~a~~~vh~~v~~~------~-~~ad~~~i~~~ln~~li~~l~~~N--------f~~~~-~~~~~p~~~~~~~ 372 (526) .+. .-+++|+ ++...=... + +.+-+++...-+.+.+++.+-.+- |++.. +.+....++|... T Consensus 378 ~~~-~~SGiAL-eL~L~PL~a~~~ek~l~l~~~mr~~r~~~~~~lL~~~erl~~~g~~~~~~g~~~~~~~~~v~ivf~p~ 455 (563) T protein:vir:74 378 VTS-AESGISL-ELQLKPLLAANEEKELEMIVVMDQFLHDWMTMWLPAYESDFQEQDGSRPFASADLLNECSVVCIFADP 455 (563) T ss_pred ccc-ccchhhh-hhhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcccccccccccCCceEEEEEeCCC Confidence 111 1233443 232222222 1 444455555555556665555531 12211 1122235679999 Q ss_pred cccCHHHHHHHHHHHHhCCCcCCHHHHHHHh---CCCCCCccchhcccC--------CCccccccccccccccccccccc Q lcl|Aclame:pro 373 EQADITSMAQSIPALVNVGLEIPSAWVYDKL---GIPQPAKNEPVLRSA--------AQPAILSRQHGQRVAALATIVGP 441 (526) Q Consensus 373 e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~---Glp~~~~~e~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 441 (526) -+.|.+...+-...|+..|+ ++.+-.-+++ |.|.|+-+.+..... .+.+...++.+.+.....+.... T Consensus 456 ~P~d~~~vv~~~~tl~~aGi-iSretAv~~L~~~g~~~pdae~e~~~ie~~~i~~~~~a~a~ad~~~~~~a~~~~g~~~~ 534 (563) T protein:vir:74 456 MPVNKTQVTQDTLLLQQAHL-ILRKMAVAKLRSIGWEYPEVDDQGNALTDDDIADMLLAEAEADASLGLSAMDNGGAGEQ 534 (563) T ss_pred CCccHHHHHHHHHHHHHcCc-hhHHHHHHHHHhCCCCCCcHHHHHhhcCHHHHHHHHHHHhhccCcccceecccCCCCcc Confidence 99999999999999999998 7766666666 777665222221110 11111111111111111111100 Q ss_pred cccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCH Q lcl|Aclame:pro 442 RYGD-QQALDKALADLPAKDMQNQANDLLAPLLEAVNRGDSETELLGALAEAFPDMDD 498 (526) Q Consensus 442 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~s~ee~~~~L~~l~~~l~~ 498 (526) ..+. .+.++ .+-+++ |+--... ..| |++ T Consensus 535 ~~dd~g~p~~----------------~~~~~~-----------~~~~~~~-~~~-~~~ 563 (563) T protein:vir:74 535 QFDDQGNPID----------------QFGNPV-----------EIPPDVT-QVP-LSP 563 (563) T ss_pred cccccCCchh----------------HcCCcc-----------cCCcccc-ccC-CCC Confidence 0110 11111 000110 0000000 000 000 No 205 >protein:vir:101494 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655388;genbank:gi:109522576;genbank:GeneID:4157566 Probab=96.45 E-value=0.00061 Score=38.20 Aligned_cols=426 Identities=13% Similarity=0.067 Sum_probs=191.8 Q ss_pred CCeeecCCCCccCc--cccchh--hhhhhhhhhhhhhhhhhccc-CHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRT--QQLREP--QTSRLAGLAKEFAQHPAKGL-TPAKLARILVEAEQGNLQAQAELFMDMEERDAHLF 75 (526) Q Consensus 1 m~~~~~~~g~p~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~l-~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~ 75 (526) |+.=--|||.|-.+ ...--| ....--.+.+.+..+-.-.. ..+.|..+++.-+.++- ..++ |+-- T Consensus 1 ~~~~~~~~~~~~~~~~g~~~~p~~v~~~d~~Rl~aY~l~~~~y~n~~~~~~~~lrg~~~~~~---r~~~------~ps~- 70 (527) T protein:vir:10 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQ---RPIY------VPNG- 70 (527) T ss_pred CCccccccCCCcCcCCccccCcccCCHHHHHHHHHHHHHHHHhcCchhheeeecCCcccccc---ceee------ehhh- Confidence 88755567665332 111111 01100011111111111111 11223333332222221 1111 2211 Q ss_pred HHHHHHHHHHhcCCceEecCCC---CCHHHHHHHHHHHHHHhcCcCHHHHHHHH-HHhhhhcceeeeEEEeec---CCee Q lcl|Aclame:pro 76 AEMSKRKRAILGLDWAVEPPRN---ASAAEKADADYLHELLLDLEGLEDLLLDA-LDGIGHGYSCIELEWALQ---GREW 148 (526) Q Consensus 76 s~l~~Rk~av~~~~w~v~~~~~---~~~~~~~~a~~v~~~l~~~~~~~~~i~~~-lda~~~G~s~~Ei~w~~~---~g~~ 148 (526) ..|++..-+|..++- .+..+.++.+.++.++..- .|+....+. .++..-|=.|+-+.|+.. +++. T Consensus 71 -------~~~~~~~~~~~~~g~~~~~~~~~e~v~~~lr~~~~~e-~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~~R~ 142 (527) T protein:vir:10 71 -------EKLIEAKMRFLGQGLKWEFSKKDAKVDDAIKVLFDRE-NWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRL 142 (527) T ss_pred -------HHhhCCcceeeccCccccccchhHHHHHHHHHHHHHh-hhHHHHHHHHHhhhhhcceeEEEeeccCCCcCCCc Confidence 223333333322221 1122345667777766552 344444443 378899999999999742 2333 Q ss_pred EEeeee------------------------eecC------------ceeEecccCC------ceEEeccC---------- Q lcl|Aclame:pro 149 MPLAFH------------------------HRPQ------------SWFQLNPEDQ------NELRLRDN---------- 176 (526) Q Consensus 149 ~~~~l~------------------------~r~~------------~~f~~~~~~~------~~l~~~~~---------- 176 (526) ....+- |+.| ++|++-.++. +...+... T Consensus 143 ~v~~~DP~~~f~~ed~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~yt~~~w~lg~w~d~ 222 (527) T protein:vir:10 143 SLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDR 222 (527) T ss_pred eEeecCcceeeeeecCCCCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcceeeeeceeeccccccc Confidence 322111 1111 0111100000 00111000 Q ss_pred ------------CCCcee---ec-CCCe---EEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEE Q lcl|Aclame:pro 177 ------------SPAGEA---LQ-PFGW---IIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLG 237 (526) Q Consensus 177 ------------~~~g~~---lp-~~k~---i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vg 237 (526) ..+++. +| |..| +++......+..+|.|-|..+.-..---+....+....++-.|.|+.+. T Consensus 223 ~e~p~~~~~~~~~~~~~~l~~lp~pi~fiPvV~~~t~p~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~~sG~Pi~~~ 302 (527) T protein:vir:10 223 PESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYAT 302 (527) T ss_pred cccccchhhhhhhcCceeeecccCCCCccceEeecCCCccccccChhhHhHHHHHHHHHhhhhhHHHHHHHHhCCceeee Confidence 001111 11 3333 3345556788889999999998888888888999999999999999888 Q ss_pred ecCCCCCHHHHHHHHHHHHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhccc--ccccch Q lcl|Aclame:pro 238 KYPPGTADEEKATLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTT--SQSGGG 315 (526) Q Consensus 238 k~~~~~~~~e~~~l~~al~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~--~~~~~g 315 (526) +--+.. +.+-+... -.++..+..=+|++..+.++... .+...|...++++.++|+..---+-..++. .++..+ T Consensus 303 tg~~~v--d~~G~~~~--~~VgPG~iweL~e~ak~~~v~~~-~~la~~~~h~~~L~~~l~~vA~~PavA~G~vD~s~~~S 377 (527) T protein:vir:10 303 DSAPPR--DSRGNMVP--WTISPLGMVEHGQNNKIYRVNGV-ASLEPSQTHMTKAEEAMQQTKGIPDIAVGVVDAAVAES 377 (527) T ss_pred cccccc--cccCCcCc--cccCCceeEecCCCcceeeccch-hhhHHHHHHHHHHHHHHHHhhcCCeeeeccccCCcCcH Confidence 532211 11111000 12333444447888888888743 355679999999999888775333222221 011112 Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHH---hcCCCCCCcccceeEEecCccccCHHHHHHHHHHHH Q lcl|Aclame:pro 316 AFALGQVHNEVRHDLLASDARQLAATLS---RDL-LWPLLV---LNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALV 388 (526) Q Consensus 316 S~a~~~vh~~v~~~~~~ad~~~i~~~ln---~~l-i~~l~~---~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~ 388 (526) ..|+ ++...-...........+..+.. ..+ ..||-. +.+-+.. .....++.|...-+.|.++..+.+.+|+ T Consensus 378 G~AL-eL~L~PLlar~~rk~L~~~~vqrq~~~~~~~~~L~aye~v~~~d~~-~~~~v~ivf~p~lP~D~~avie~v~tL~ 455 (527) T protein:vir:10 378 GIAL-DLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDAD-KKLTVTITFRDPKPVNSEKRFNQLLQLW 455 (527) T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcccCCCc-cccceEEEecccCCCCHHHHHHHHHHHH Confidence 2232 22222222222223222222221 111 223222 2222221 1123478999999999999999999999 Q ss_pred hCCCcCCHHHHHHHh----CCCCCCcc-chhcccCCCccc----ccccccccccccccccccccccccchHHHHHHHHH Q lcl|Aclame:pro 389 NVGLEIPSAWVYDKL----GIPQPAKN-EPVLRSAAQPAI----LSRQHGQRVAALATIVGPRYGDQQALDKALADLPA 458 (526) Q Consensus 389 ~~G~~v~~~~~~e~~----Glp~~~~~-e~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (526) ..|+ ++.+..-+++ |+..++.+ +.+.......+. ...+.+...+...+ -..+..|+....... T Consensus 456 ~aGi-~S~~tAv~~L~~~~g~eD~E~E~~~I~~era~~a~a~a~A~~~~~a~~~~~~g------~~~~~~d~~~~~~~~ 527 (527) T protein:vir:10 456 EAGL-IPAKKLTEELSKIMGFELTEEDFKQATEDKKTQGIAQAEAADPFGAQMAAEQG------IPDEEDDQALNGQPL 527 (527) T ss_pred HcCc-hhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhHHhhhhcCchhhhhccccC------CCCCCcccccCCCCC Confidence 9998 7887777777 76555443 111111111111 11111111111100 011111211111111 No 206 >protein:vir:102239 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655205;genbank:gi:109522785;genbank:GeneID:4157478 Probab=96.44 E-value=0.00062 Score=38.18 Aligned_cols=426 Identities=13% Similarity=0.062 Sum_probs=191.8 Q ss_pred CCeeecCCCCccCc--cccchh--hhhhhhhhhhhhhhhhhccc-CHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRT--QQLREP--QTSRLAGLAKEFAQHPAKGL-TPAKLARILVEAEQGNLQAQAELFMDMEERDAHLF 75 (526) Q Consensus 1 m~~~~~~~g~p~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~l-~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~ 75 (526) |+.=--|||.|-.+ ...--| ....--.+.+.+..+-.-.. ..+.|..+++.-+.++- ..++ |+-- T Consensus 1 ~~~~~~~~~~~~~~~~g~~~~p~~v~~~d~~Rl~aY~l~~~~y~n~~~~~~~~lrg~~~~~~---r~~~------~ps~- 70 (527) T protein:vir:10 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQ---RPIY------VPNG- 70 (527) T ss_pred CCccccccCCCcCcCCccccCcccCCHHHHHHHHHHHHHHHHhcCchhheeeecCCcccccc---ceee------ehhh- Confidence 88755567665332 111111 01100011111111111111 11223333332222221 1111 2211 Q ss_pred HHHHHHHHHHhcCCceEecCCC---CCHHHHHHHHHHHHHHhcCcCHHHHHHHH-HHhhhhcceeeeEEEeec---CCee Q lcl|Aclame:pro 76 AEMSKRKRAILGLDWAVEPPRN---ASAAEKADADYLHELLLDLEGLEDLLLDA-LDGIGHGYSCIELEWALQ---GREW 148 (526) Q Consensus 76 s~l~~Rk~av~~~~w~v~~~~~---~~~~~~~~a~~v~~~l~~~~~~~~~i~~~-lda~~~G~s~~Ei~w~~~---~g~~ 148 (526) ..|++..-+|..++- .+..+.++.+.++.++..- .|+....+. .++..-|=.|+-+.|+.. +++. T Consensus 71 -------~~~~~~~~~~~~~g~~~~~~~~~e~v~~~lr~~~~~e-~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~~R~ 142 (527) T protein:vir:10 71 -------EKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRE-NWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRL 142 (527) T ss_pred -------HHhhCCcceeeccCccccccchhHHHHHHHHHHHHHh-hhHHHHHHHHHhhhhhcceeEEEeeccCCCcCCCc Confidence 223333333322221 1122345667777766552 344444443 378899999999999742 2333 Q ss_pred EEeeee------------------------eecC------------ceeEecccCC------ceEEeccC---------- Q lcl|Aclame:pro 149 MPLAFH------------------------HRPQ------------SWFQLNPEDQ------NELRLRDN---------- 176 (526) Q Consensus 149 ~~~~l~------------------------~r~~------------~~f~~~~~~~------~~l~~~~~---------- 176 (526) ....+- |+.| ++|++-.++. +...+... T Consensus 143 ~v~~~DP~~~f~~ed~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~yt~~~w~lg~w~d~ 222 (527) T protein:vir:10 143 SLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDR 222 (527) T ss_pred eEeecCcceeeeeecCCCCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcceeeeeceeeccccccc Confidence 322111 1111 0111100000 00111000 Q ss_pred ------------CCCcee---ec-CCCe---EEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEE Q lcl|Aclame:pro 177 ------------SPAGEA---LQ-PFGW---IIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLG 237 (526) Q Consensus 177 ------------~~~g~~---lp-~~k~---i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vg 237 (526) ..+++. +| |..| +++......+..+|.|-|..+.-..---+....+....++-.|.|+.+. T Consensus 223 ~e~p~~~~~~~~~~~~~~l~~lp~pi~fiPvV~~~t~p~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~~sG~Pi~~~ 302 (527) T protein:vir:10 223 PESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYAT 302 (527) T ss_pred cccccchhhhhhhcCceeeecccCCCCccceEeecCCCccccccChhhHhHHHHHHHHHhhhhhHHHHHHHHhCCceeee Confidence 001111 11 3333 3345556788889999999998888888888999999999999999888 Q ss_pred ecCCCCCHHHHHHHHHHHHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhccc--ccccch Q lcl|Aclame:pro 238 KYPPGTADEEKATLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTT--SQSGGG 315 (526) Q Consensus 238 k~~~~~~~~e~~~l~~al~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~--~~~~~g 315 (526) +--+.. +.+-+... -.++..+..=+|++..+.++... .+...|...++++.++|+..---+-..++. .++..+ T Consensus 303 tg~~~v--d~~G~~~~--~~VgPG~iweL~e~ak~~~v~~~-~~la~~~~h~~~L~~~l~~vA~~PavA~G~vD~s~~~S 377 (527) T protein:vir:10 303 DSAPPR--DSRGNMVP--WTISPLGMVEHGQNNKIYRVNGV-ASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAES 377 (527) T ss_pred cccccc--cccCCcCc--cccCCceeEecCCCcceeeccch-hhhHHHHHHHHHHHHHHHHhhcCCeeeeccccCCcCcH Confidence 532211 11111000 12333444447888888888743 355679999999999888775333222221 011112 Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHH---hcCCCCCCcccceeEEecCccccCHHHHHHHHHHHH Q lcl|Aclame:pro 316 AFALGQVHNEVRHDLLASDARQLAATLS---RDL-LWPLLV---LNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALV 388 (526) Q Consensus 316 S~a~~~vh~~v~~~~~~ad~~~i~~~ln---~~l-i~~l~~---~Nf~~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~ 388 (526) ..|+ ++...-...........+..+.. ..+ +.||-. +.+-+.. .....++.|...-+.|.++..+.+.+|+ T Consensus 378 G~AL-eL~L~PLlar~~rk~L~~~~Vqrq~~~~~~~~~L~aye~v~~~d~~-~~~~v~ivf~p~lP~D~~avie~v~tL~ 455 (527) T protein:vir:10 378 GIAL-DLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDAD-KKLTVTITFRDPKPVNNEKRFAQLLELW 455 (527) T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcccCCCc-cccceEEEecccCCCCHHHHHHHHHHHH Confidence 2232 22222222222223222222221 111 223222 2222221 1123478999999999999999999999 Q ss_pred hCCCcCCHHHHHHHh----CCCCCCccc-hhcccCCCccc----ccccccccccccccccccccccccchHHHHHHHHH Q lcl|Aclame:pro 389 NVGLEIPSAWVYDKL----GIPQPAKNE-PVLRSAAQPAI----LSRQHGQRVAALATIVGPRYGDQQALDKALADLPA 458 (526) Q Consensus 389 ~~G~~v~~~~~~e~~----Glp~~~~~e-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (526) ..|+ ++.+..-+++ |+..++.+- .+.......+. ...+.+...+...+ -..+..|+....... T Consensus 456 ~aGi-iS~etAv~~L~~~~g~eD~E~E~~~I~~era~~a~a~a~a~~~~~a~~~~~~g------~~~~~~d~~~~~~~~ 527 (527) T protein:vir:10 456 EAGL-IPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQG------IPDEEDDQALNGQPL 527 (527) T ss_pred HcCc-hhHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhHHhhhhcCchhhhhccccC------CCCCCcccccCCCCC Confidence 9998 7887777777 765554431 11111111111 11111111111100 011111111111111 No 207 >protein:vir:94599 Length: 641 # NCBI annotation: PfWMP4_39 # Family: family:all:1548 # MgeID: mge:1525 # MgeName: Pf-WMP4 # Cross-refs: genbank:acc:YP_762669;genbank:gi:115304377;genbank:GeneID:5142299 Probab=96.34 E-value=0.00073 Score=37.78 Aligned_cols=461 Identities=10% Similarity=0.035 Sum_probs=185.7 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHH----ccc------------CCCHH--HHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILV----EAE------------QGNLQ--AQAE 62 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~----~a~------------~g~~~--~~~~ 62 (526) |+.-+=-++-+-+.+.....-.+.|....+..... +..--..|..+.+ ..+ .|+.. ...+ T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--R~~~e~~W~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~k 82 (641) T protein:vir:94 5 MPTPIIEDKESAKRKLSTDRIGGVVISKWQESRDK--RNTVENNWDETYELYRASAIDRQNTRARNFQTTGADDADWRHR 82 (641) T ss_pred CCcccccCCcchhhcCCchhHHHHHHHHHHHHHHh--hcchHHHHHHHHHHhhcchhhhhhcccccccccccchhccccc Confidence 55433333333333333222333333322222110 0011111222110 000 00000 0011 Q ss_pred HHHHHHhccHHHHHHHHHHHHHHhc-----CCc-eEecCCCCCHHHHHHHHHHHH----HHhcCcCHHHHHHHHH-Hhhh Q lcl|Aclame:pro 63 LFMDMEERDAHLFAEMSKRKRAILG-----LDW-AVEPPRNASAAEKADADYLHE----LLLDLEGLEDLLLDAL-DGIG 131 (526) Q Consensus 63 l~~~m~~~D~~v~s~l~~Rk~av~~-----~~w-~v~~~~~~~~~~~~~a~~v~~----~l~~~~~~~~~i~~~l-da~~ 131 (526) + .|+++..+++.....+.+ .+| .++|...++ ...|+.+++ .+.... |.+++..++ +++. T Consensus 83 i------~~~~~~~~~~~l~s~Lm~~~~p~~~wf~~~p~~~ed---~~~A~~~~~~~~~~l~~~~-~~~~~~~~~~d~~~ 152 (641) T protein:vir:94 83 I------NTGHTFEVVETLVAYFKGATFPSDDWFDLKGMVPEL---ADAARVVKQLTKTKLEAAS-IRDIFETYVRNLVL 152 (641) T ss_pred c------cchhHHHHHHHHhhHHhhhhcCCCceEEEecCCCCh---HHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHhh Confidence 1 367777777766666543 445 666654433 234444443 343433 556666665 7888 Q ss_pred hcceeeeEEEeec-----------CCee-------------EEeeeeeecCceeEecccC-------------------- Q lcl|Aclame:pro 132 HGYSCIELEWALQ-----------GREW-------------MPLAFHHRPQSWFQLNPED-------------------- 167 (526) Q Consensus 132 ~G~s~~Ei~w~~~-----------~g~~-------------~~~~l~~r~~~~f~~~~~~-------------------- 167 (526) +|.+++.+-|... ++.+ .-.++.+.++..|.+++.. T Consensus 153 ~g~~iv~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~r~~~v~~~di~~dps~~~~~~~f~~~r~t~~t~~~l 232 (641) T protein:vir:94 153 YGVSTYRLGWDTSMERQFKRTFVETGDIFGGWEDVAVNRQRSELRIEPLSPYDVWLDTSGGKNTGTFVRLRHTREELHEL 232 (641) T ss_pred cCceEEEeehhhHHHHhhhhhcccchhhcccccccceecccceeeEEecchhheeecCCCCcccccceehhhhHHHHHHH Confidence 8988776666421 1100 0001111111111110000 Q ss_pred ----------------------------------C--ceEE-ec-----cC----------CC------Cceeec-CCCe Q lcl|Aclame:pro 168 ----------------------------------Q--NELR-LR-----DN----------SP------AGEALQ-PFGW 188 (526) Q Consensus 168 ----------------------------------~--~~l~-~~-----~~----------~~------~g~~lp-~~k~ 188 (526) . ..++ +. ++ .+ .+.+.+ ..-| T Consensus 233 ~~eg~~~~d~v~~~~~~~~~~~~~d~~~d~~~~~~~~~~~~e~~gd~~~d~~~~~~~~~~~~g~~il~~~~~~~~d~~Pf 312 (641) T protein:vir:94 233 VTSGYYDLDLTQVEQYVDYKFADPDTPKDVNGTDTSGWDIIEYYGPLLVEGVQFWCVHAVFYGKQLIRLSDSKYWCGSPF 312 (641) T ss_pred HhcCCCChhhcchhhcccccccccccccccccccccccceeeeeeeeccCCCceeeEEEEEeCCEEeecccccccCcCCe Confidence 0 0000 00 00 00 010111 1258 Q ss_pred EEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHhhcCeEEEecC Q lcl|Aclame:pro 189 IIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGHAAAGIIPE 268 (526) Q Consensus 189 i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~~~~~iip~ 268 (526) ++.++....+..||.|....+..-..-.+...+.-+..+++..-|..++.-+...+..+. ..+.++.+.... T Consensus 313 ~~~r~~~~~~~~YG~gp~~~~l~dqk~ln~l~r~~ld~~~~~~~p~~~~~~~~~~~~~~l--------~~~PG~ii~~~~ 384 (641) T protein:vir:94 313 VTTTLLPDRDSVYGMSVLHPNLGALHVLNVLTNGRLDNLVLHINKMWTLVEDGILKREDV--------KAKPGAVFKVAQ 384 (641) T ss_pred EEecceecCCcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecccccccccee--------eccCCcceeeCC Confidence 888998899999999999999999999999999999999998877665543322222111 123344444444 Q ss_pred CceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhh-hhhHHHHH--HHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 269 TMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAF-ALGQVHNE--VRHDLLASDARQLAATLSRD 345 (526) Q Consensus 269 ~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~-a~~~vh~~--v~~~~~~ad~~~i~~~ln~~ 345 (526) ...+..+...+.+.......+++++..|.+++....+....+ ...|.+ -+.+|... .....+..-.+.++..+-.. T Consensus 385 ~~~v~pl~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~TAtEV~~~~~e~~~~l~~i~r~l~~e~l~p 463 (641) T protein:vir:94 385 HGSLQPIDMGRQDFVVTYQEAQVQESSVYRNTSTGPLIGNAA-PRGGERVTAAEIQGVRDAGGNRLSSVHTHIEDSSTLP 463 (641) T ss_pred CCcceeecCCccccchhHHHHHHHHHHHHHhhhhhhhhcccc-cccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 445666644333333445678889888888875544322111 111111 12234322 12233444445555444444 Q ss_pred HHHHHHHhc---------------------CCCCCCcccceeEEecCccccCHH---HHHHHHHHHHh----CCC----- Q lcl|Aclame:pro 346 LLWPLLVLN---------------------RPGSPDVRRAPRLVFDLREQADIT---SMAQSIPALVN----VGL----- 392 (526) Q Consensus 346 li~~l~~~N---------------------f~~~~~~~~~p~~~~~~~e~edl~---~~a~~~~~l~~----~G~----- 392 (526) |+.+++.++ |.+..+... +..++.. +-... ..+..++.|.. +|. T Consensus 464 ll~~~~~~~~~~~~~p~i~R~~~~~~~~~~~~~~~p~~L--~~~~~iv-~l~~~q~~~~~~~i~~l~~~~~~~a~~P~v~ 540 (641) T protein:vir:94 464 LLNKVFSLLQQFYVTPETIRMYVPEEQMDGFFEVSPEYL--HYPYKFL-ALGANYVVERERMVTDLLQLLDISGRVPQIG 540 (641) T ss_pred HHHHHHHHHHHhccchhhhhhhchhhhcccCCCCCccce--eeeeeEe-ecchhHHHHHHHHHHHHHHHHHHhhcChhhh Confidence 555554433 222221111 1222211 11111 11222222221 221 Q ss_pred -cCCH----HHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 393 -EIPS----AWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALADLPAKDMQNQAND 467 (526) Q Consensus 393 -~v~~----~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (526) .++. ..+.+..|++.|.. ++....+++.+.+... ...+..+.....+........++.. T Consensus 541 d~~d~~~~~~~~~~~~g~~~p~~---~ir~~~~~~~~~~~~~-------------~~~q~~~~~~a~~~~~~~~~~a~~~ 604 (641) T protein:vir:94 541 QSLDYALILEDLLRQMRFTDPMR---YIKKAEAPPAAPPIAP-------------AEPGALPPEMMNSVGGGLNDQAIAG 604 (641) T ss_pred hcCCHHHHHHHHHHHhCCCCchh---hccCccCchhHHHHHH-------------HHHHHHHHHHHHHHHhhhHHHHHHH Confidence 1222 34455668776643 2222111111100000 0000011111111111111112222 Q ss_pred HH-HHHHHHHHhcCCH--HHHHHHHHHHhhcCCHHHH Q lcl|Aclame:pro 468 LL-APLLEAVNRGDSE--TELLGALAEAFPDMDDSAL 501 (526) Q Consensus 468 ~~-~~i~~~~~~a~s~--ee~~~~L~~l~~~l~~~~l 501 (526) +. ++...+....+.. +-+...|++.-|+.+..+| T Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (641) T protein:vir:94 605 MTPEDVSDLASRIGIDTSDVAPEAMAAATQQITSGAL 641 (641) T ss_pred hhHHHHHHHHHhhcCCchhhhHHHHhcccccccccCC Confidence 22 2222222222211 1233344455555555544 No 208 >protein:vir:80165 Length: 651 # NCBI annotation: portal protein # Family: family:all:1548 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285799;genbank:gi:148747833;genbank:GeneID:5220441 Probab=96.33 E-value=0.00074 Score=37.76 Aligned_cols=469 Identities=12% Similarity=0.095 Sum_probs=199.9 Q ss_pred ecCCCCccCccccchhhhhhhhh-hhhhhhhhhhcccC-HHHHHHHHHcccCCCHHHHHHHHH-HHH------------- Q lcl|Aclame:pro 5 VDVYGNPIRTQQLREPQTSRLAG-LAKEFAQHPAKGLT-PAKLARILVEAEQGNLQAQAELFM-DME------------- 68 (526) Q Consensus 5 ~~~~g~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~~~~l~~a~~g~~~~~~~l~~-~m~------------- 68 (526) .-..+.+++.+.-..-.+..++. +.+.|..+.-.... ...|....+-... .. ...+.|. ... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~w~~~~~~~~~-~~-~~~~y~~~~~~~~~~~~~~~~rs~ 78 (651) T protein:vir:80 1 MKLATTTTDKNRQTYDETHDVSSYVKKEYKRFCDARQVCEETWLEAWGMYLS-TP-EAQDYLRDQVLRSVGDVNADWRHK 78 (651) T ss_pred CcccccccchhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcc-cH-HHHHhhccccccccCCCCCCCCcc Confidence 22345666655444444555432 22333222111110 1122222111111 00 0011110 000 Q ss_pred hccHHHHHHHHHHHHHHhcC-----C-ceEecCCCCCHHHHHHHHHHHHHHh---cCcCHHHHHHHH-HHhhhhcceeee Q lcl|Aclame:pro 69 ERDAHLFAEMSKRKRAILGL-----D-WAVEPPRNASAAEKADADYLHELLL---DLEGLEDLLLDA-LDGIGHGYSCIE 138 (526) Q Consensus 69 ~~D~~v~s~l~~Rk~av~~~-----~-w~v~~~~~~~~~~~~~a~~v~~~l~---~~~~~~~~i~~~-lda~~~G~s~~E 138 (526) -.++.|+.+++.+...+... + +.++|..+++ +.+..++.+..++. +..+|...+..+ .|++.+|.+++- T Consensus 79 ~~~~~v~~~ve~~~~~l~~~~~~~~~~~~~~p~~~~d-~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~l~~G~~i~k 157 (651) T protein:vir:80 79 ITTGKAFEAIETIHAYLMSATFPNKNWFDVVPAKPGQ-DNLLVSRLIKRYVQDKLTEGKFRAAYANFLRQLLITGNSVLA 157 (651) T ss_pred ccChhHHHHHHHHHHHHHHhhcCCCceeEeccCCchh-HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHhhcccCceEEE Confidence 02567888888887777642 2 6677765543 34445666666654 234688888765 589999999998 Q ss_pred EEEeecC---------------Ce--eE----------EeeeeeecCceeEecccCCc---------------------- Q lcl|Aclame:pro 139 LEWALQG---------------RE--WM----------PLAFHHRPQSWFQLNPEDQN---------------------- 169 (526) Q Consensus 139 i~w~~~~---------------g~--~~----------~~~l~~r~~~~f~~~~~~~~---------------------- 169 (526) +.|++.- +. +. -..+..+|+..|.+++.-.. T Consensus 158 v~we~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~v~p~~~~~dp~a~~~~d~~~v~~~~~t~~~l~~l~~ 237 (651) T protein:vir:80 158 LPWRVETAEVKKKVQVRTPLFEDEPTFEVVSEEREVKSSPDFEVLDMFDCFYDPNVTDPNRGAFIRKLTKTKADILNLLS 237 (651) T ss_pred EeecceeeeeehheeccccccccccceeeeccceeeeceeEEEEecHHHeeecCCCcCccccceeeeeeeeHHHHHHHHh Confidence 8885320 00 00 00122233332222221000 Q ss_pred -------------------------------------------e--E-----Eec-cC--------CCCc--e----eec Q lcl|Aclame:pro 170 -------------------------------------------E--L-----RLR-DN--------SPAG--E----ALQ 184 (526) Q Consensus 170 -------------------------------------------~--l-----~~~-~~--------~~~g--~----~lp 184 (526) . + ++. ++ ...| + ..+ T Consensus 238 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~v~E~~~~~d~e~~~~~~~~v~~~g~~il~~~~~~ 317 (651) T protein:vir:80 238 EGYYYGVDPLDVVEHKCKDTSDTKQDMLSTFQGVTTSLWSPHQNVELLEYWGDIHLENKTYHDVVVTIMGNEVLRFEQNP 317 (651) T ss_pred cccccchhhHHHHhhhccccccCCccccccccCCCccccccccceEEEEEEEEeeccCCceEEEEEEEcCcEEecccccC Confidence 0 0 000 00 0000 0 111 Q ss_pred ---CCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHhhcC Q lcl|Aclame:pro 185 ---PFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGHA 261 (526) Q Consensus 185 ---~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~~ 261 (526) ..-|+++++....|..||.|....+.......+...+..+..+.+...|..+.. +.+....+ . +. .+.+ T Consensus 318 ~~~~~Pf~~~~~~~~~~~~yG~g~~~~~~~~q~~ln~l~~~~ld~~~~~~~~~~~v~-~d~~~~~~--~----l~-~~pg 389 (651) T protein:vir:80 318 YWCGRPFVIGTYIPTARQPYAMGALQPNLGMLHELNIITNQRLDNLELAIDQMYTLR-SDGLLQPE--D----VY-TEPG 389 (651) T ss_pred CCCCCCeeeecceecCccccCCChHHHHhHHHHHHHHHHHHHHHHHHHHhCCcEEec-CCccccHH--H----hh-cCCC Confidence 135888888888999999999999999999999999999999999988865543 22222211 1 11 2445 Q ss_pred eEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHH--HHHHHHHHHHHHHH Q lcl|Aclame:pro 262 AAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNE--VRHDLLASDARQLA 339 (526) Q Consensus 262 ~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~--v~~~~~~ad~~~i~ 339 (526) +++.......+..+.....+......++++++..|........+..+.+..+.+..-+++++.. .....+..-.+.+. T Consensus 390 ~vi~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~gv~~~~~g~~~~~~~~~TAteI~~~~~~~~~~l~~v~~~l~ 469 (651) T protein:vir:80 390 KVFLVSDHGDLQPLANQSSNFSITYQESSFLESTIDKNFGTGNYVGANAARSGERVTAAEVAAVREAGGNRLSGIHKHIE 469 (651) T ss_pred ceEEecCCCCceeeccCcccchhHHHHHHHHHHHHHHHhcCChHHhCCCccchhhccHHHHHHHHHHHHHHHHHHHHHHH Confidence 5555666666666654333333445689999999988865544433221111122222344433 24455666667777 Q ss_pred HHHHHHHHHHHHHhcCCCCCCcccceeEE--------ecCccccC------------------HHHHHHHHHHHHhCCCc Q lcl|Aclame:pro 340 ATLSRDLLWPLLVLNRPGSPDVRRAPRLV--------FDLREQAD------------------ITSMAQSIPALVNVGLE 393 (526) Q Consensus 340 ~~ln~~li~~l~~~Nf~~~~~~~~~p~~~--------~~~~e~ed------------------l~~~a~~~~~l~~~G~~ 393 (526) .++-+.|+..++.++.-.... ...|++. +.....+| ....++... +..++.. T Consensus 470 ~e~l~pl~~r~l~l~~~~~~~-~~~~ri~~~~~~~~~~~~i~~~dl~~~~~iv~~g~~~~~~r~~~~~~l~~-~~q~~~~ 547 (651) T protein:vir:80 470 ETSLLVLLEKVMHLVQQFTDQ-PGMVRVAGDEAGAYEYYELDVEDLQKEVRLVPIGSDHVIERKQYIEDRLT-FIQAVAQ 547 (651) T ss_pred HHHHHHHHHHHHHHHHHhcCc-ccceeecccccccccccccCccceeeeeeeeeccHHHHHHHHHHHHHHHH-HHHhhcc Confidence 766566666676665321111 0111110 00000011 111222222 2222221 Q ss_pred CC-----------HHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccccccchHHHHHHHHHHHHH Q lcl|Aclame:pro 394 IP-----------SAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALADLPAKDMQ 462 (526) Q Consensus 394 v~-----------~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (526) .+ ...+.+..|++.+. ..+.+..+++...+.......+.... .+.....+........+ T Consensus 548 ~p~~~~~~~~~~~~~~l~~~~g~~~~~---~~l~~~~q~~~~~~~~~~~~q~~~~~-------~~a~~~~~~~~~~~~~~ 617 (651) T protein:vir:80 548 VPEMGQLVDYKRILVDLLQHWGFEEPE---AYLKQQDQQAPANPQEALLSQAKDVG-------GQAMSNMLQNQLQADGG 617 (651) T ss_pred CCccchhhhHHHHHHHHHHHcCCCCcH---HhcCCCccchhhhhhHHHHhhHHHHH-------HHHHHHHHHHHHHHHHH Confidence 11 13456677886553 23322222221111110000000000 00000000000000000 Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCHHHHHH Q lcl|Aclame:pro 463 NQANDLLAPLLEAVNRGDSETELLGALAEAFPDMDDSALTD 503 (526) Q Consensus 463 ~~~~~~~~~i~~~~~~a~s~ee~~~~L~~l~~~l~~~~l~~ 503 (526) . .+.......-. -.++...+...-.+|-..+|++ T Consensus 618 ~---~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~ 651 (651) T protein:vir:80 618 T---QMMSEMYGTPN----ADQMQQELMATTPNVSEQQLTQ 651 (651) T ss_pred H---HHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhccC Confidence 0 00000000000 0011111111111222222222 No 209 >protein:vir:5839 Length: 533 # NCBI annotation: similar to portal vertex protein of head # Family: family:all:1036 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835625;genbank:gi:30044028 Probab=95.55 E-value=0.0019 Score=35.55 Aligned_cols=446 Identities=13% Similarity=0.085 Sum_probs=189.6 Q ss_pred CCeeecCCCC-ccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGN-PIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMS 79 (526) Q Consensus 1 m~~~~~~~g~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~ 79 (526) |+..-+..|. ||..+.....++. +....+ ++ | ..-+-..+.+-|+.|...++.|.++++ T Consensus 26 ~~~p~~~dG~s~i~~~~~~~~~~~---~~~~~~--~g--g-------------~~~n~~eLI~~YR~ma~~~pEVd~Aid 85 (533) T protein:vir:58 26 MGAPHGAGGSSMIPINMYHPFATA---GYASRF--YG--G-------------IEFNRFFLYDMYDRMDYTDPLISTVLD 85 (533) T ss_pred ccCccCCCCCccccCCCCcchhhh---hhhhhh--hc--c-------------ccccHHHHHHHHHHhhccCcchhhHHH Confidence 3333344442 4433222111221 111111 10 0 011334567778888667999999999 Q ss_pred HHHHHHhcCC-----ceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHH-hhhhcceeeeEEEeecCCeeEEeee Q lcl|Aclame:pro 80 KRKRAILGLD-----WAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALD-GIGHGYSCIELEWALQGREWMPLAF 153 (526) Q Consensus 80 ~Rk~av~~~~-----w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~ld-a~~~G~s~~Ei~w~~~~g~~~~~~l 153 (526) -....+.-.+ -+|.- +...-++.+.+.+..+| +|+.-..++.. -.-+|--.+.++- ++..-.+.+| T Consensus 86 eIvneaiv~d~~~~pV~v~l--~~~e~s~~iK~kI~~ll----df~~~~~~~fR~WYVDGriy~Hkii--k~~k~GI~el 157 (533) T protein:vir:58 86 IIADECTIPNENGNIVDVVT--KDIELAKAILSYLDYVI----NIEKNAYPIIRNMIKYGDMFLHILE--KGSDGTIEKF 157 (533) T ss_pred hhhceeeEecCCCceeEeec--ccccccHHHHHHHHHHh----cchhhhhHHHHhhhhcceeEEEecc--CCcccchhhh Confidence 9876654222 11211 11223344444444333 35444444432 3335544444431 2233445567 Q ss_pred eeecCceeEecccC---CceEEecc------CCCCceeecCCCeEEEeec-CCCCccccchhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 154 HHRPQSWFQLNPED---QNELRLRD------NSPAGEALQPFGWIIHRPR-ARSGYVARSGLFRVLAWPYLFRHYATSDL 223 (526) Q Consensus 154 ~~r~~~~f~~~~~~---~~~l~~~~------~~~~g~~lp~~k~i~~~~~-~~~g~p~g~gLl~~~~~~~~fK~~~~~~w 223 (526) ...+|+.+++-++- ...+++.+ .+..++.+|+...+++.+. .....+++.|.|+.+..++---+...-.. T Consensus 158 r~lDPr~i~~vr~~~t~~eyyvy~~~~~~~~s~~~~~kI~~daI~y~~SGl~d~~~~~iisyLhkAiKp~NQLkmiEDAl 237 (533) T protein:vir:58 158 QVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDAL 237 (533) T ss_pred eecCCeeeEEEEeeccceEEEeecccccccccCccccccchhheeeeeeccccCCCCceehhhhHHHHHHHHHHHHHHHH Confidence 77777766543321 12222221 2334566777665544444 45678899999999999988776654444 Q ss_pred HHHHHHcCCc------eEEEecCCCCCHHHHHHHHHHHHHh---hcCeEEE-----------------e-----cCCceE Q lcl|Aclame:pro 224 AEMLEIYGLP------IRLGKYPPGTADEEKATLLRAVTGL---GHAAAGI-----------------I-----PETMAI 272 (526) Q Consensus 224 ~~f~E~~G~P------~~vgk~~~~~~~~e~~~l~~al~~~---~~~~~~i-----------------i-----p~~~~i 272 (526) +.|- .-=.| +-||..|..-.++=.+.+....++- -+.++-| + ..|++| T Consensus 238 VIYR-isRAPeRRvFYIDVGNlpk~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~m~~~sMlEDyWLpRReGgrgTEI 316 (533) T protein:vir:58 238 MLYR-VVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEI 316 (533) T ss_pred HHHh-hcCChhheEEEEeecCCCccCHHHHHHHHHHhcccceEEeccCCeEeeccchhhhhhhHhhhcccccCCCcccee Confidence 4432 11222 3344454433222223333222221 0111111 1 146899 Q ss_pred EEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 273 DFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQV-HNEV-RHDLLASDARQLAATLSRDLLWPL 350 (526) Q Consensus 273 e~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~v-h~~v-~~~~~~ad~~~i~~~ln~~li~~l 350 (526) +.+.++ +-+. ..-++|+.+++-+++-.+.--.+.. ++ ....+++ ..++ |...+..-...+...|.++|+ T Consensus 317 ~TLpGg-~lge--meDV~YF~kkLy~ALnVP~sRl~~e-~~--fgr~~eItRDEiKF~KFI~rLR~rF~~ll~~qLi--- 387 (533) T protein:vir:58 317 DILQGS-KVDL--AEDVEYMLNRLISALKVPKAFIGYE-GD--VNAKNTLATQDIKFNNTIKRIQGFFVEELERMVR--- 387 (533) T ss_pred eecCCC-CCCc--HHHHHHHHHHHHHHhCCCeeecCCC-CC--CccchhhhHHHHHHHHHHHHHHHHHHHHHhcccc--- Confidence 999753 2333 3569999999999998776444322 22 2233344 3344 556777777777777776654 Q ss_pred HHhcCCCCCCcccceeEEecC----ccccCHHHHHHHHHHHHhCCCcCCHHHHHHH-hCCCCCCccc-hhcccCCCcccc Q lcl|Aclame:pro 351 LVLNRPGSPDVRRAPRLVFDL----REQADITSMAQSIPALVNVGLEIPSAWVYDK-LGIPQPAKNE-PVLRSAAQPAIL 424 (526) Q Consensus 351 ~~~Nf~~~~~~~~~p~~~~~~----~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~-~Glp~~~~~e-~~~~~~~~~~~~ 424 (526) ++.-- ..+. -++.|.. .|-.+.+.+.+++..|..+-=-|.+.|+++. |.++.....+ +..+......-- T Consensus 388 --lk~ii--t~ee-w~~~f~~Dn~f~ElKe~Eil~~Ri~~l~~~dpyvgk~yi~k~ILr~tdei~~q~e~ie~E~~~~~~ 462 (533) T protein:vir:58 388 --MNKEF--ADQD-FRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLF 462 (533) T ss_pred --cccCc--chhh-eeeeeeccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCChhhhHHHHHHHHhhcCCCC Confidence 33211 1111 1233321 2223444556666666654223778888765 5665421111 111111000000 Q ss_pred ccc-cccccccc--ccccc-cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH--HHHHHHHhhcCCH Q lcl|Aclame:pro 425 SRQ-HGQRVAAL--ATIVG-PRYGDQQALDKALADLPAKDMQNQANDLLAPLLEAVNRGDSETEL--LGALAEAFPDMDD 498 (526) Q Consensus 425 ~~~-~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~s~ee~--~~~L~~l~~~l~~ 498 (526) +.. .+....+. .+... +...+..........+.......++ .-++.+++. ...=.+--|.|+. T Consensus 463 ~~~~~~~e~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~a~~~~~~~~g~~~~~~~~p~ 531 (533) T protein:vir:58 463 DTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTEGGEELGGEL-----------NLGGAFEEFEEETGGGEEELPFPE 531 (533) T ss_pred CCCCcccccCCcccCccccCcccCCCChhhHhcccCCcccccccc-----------cccccchhhhhhcCCcccCCCCCC Confidence 000 00000000 00000 0000000000000000000000000 001111110 0011112234444 Q ss_pred HH Q lcl|Aclame:pro 499 SA 500 (526) Q Consensus 499 ~~ 500 (526) ++ T Consensus 532 ~~ 533 (533) T protein:vir:58 532 EE 533 (533) T ss_pred CC Confidence 43 No 210 >protein:vir:78393 Length: 489 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1851 # MgeName: SETP3 # Cross-refs: genbank:acc:YP_001110831;genbank:gi:134288592;genbank:GeneID:5179656 Probab=95.44 E-value=0.0021 Score=35.31 Aligned_cols=406 Identities=13% Similarity=0.046 Sum_probs=167.1 Q ss_pred eecCCCCccCccccchh---hhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHH--HHHHHHHHHhc---cHHHH Q lcl|Aclame:pro 4 IVDVYGNPIRTQQLREP---QTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQA--QAELFMDMEER---DAHLF 75 (526) Q Consensus 4 ~~~~~g~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~--~~~l~~~m~~~---D~~v~ 75 (526) .+..+|+--+++..... ..+....++..+.+-- + ...+.+....+.+ -..-|+..+.+ =+++. T Consensus 1 ~~~~~~~~~~V~~~hp~y~a~~~~W~~ird~~~G~~----~-----~~~r~~yl~~~~~~~~e~~Y~~rl~rA~~~n~~~ 71 (489) T protein:vir:78 1 MLTENGQGSGVKTKHREWLHYAPKWQKVRHALAGEL----V-----SYLRNVGLNEPDKAYGEARQAEYEAGGIVYNFTR 71 (489) T ss_pred CccCCCccCCCCccCHHHHHHHHHHHHHHHHhcCcc----c-----ccccCCCCCCCCCCCChHHHHHHHhccccCChHH Confidence 45677776555443322 1122222332222100 0 0001111100000 01124433332 34445 Q ss_pred HHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEee----------- Q lcl|Aclame:pro 76 AEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWAL----------- 143 (526) Q Consensus 76 s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~----------- 143 (526) ..+..-...|.+.+-.++. ...+..+++.+=..-.+++.+++.++ .++.||.+.+=+.+-. T Consensus 72 ~tl~~l~G~vfrk~p~~~~-------p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~T~ade~~ 144 (489) T protein:vir:78 72 RTLSGMVGSVMRKEPEINI-------PKELEYLLKNADGSGVGLIQHAQDTLMEIDSVGRGGLLVDAPETGAATAAEQNA 144 (489) T ss_pred HHHHHHhchhhcCCcceec-------cHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeeCCCCCcCHHHHHH Confidence 5555555555555544431 12233333222111124788888777 4777887755444421 Q ss_pred ----------------------cCCeeEEeeeeeecCc-------eeEe---------cccCCceE---Eec--cCCCCc Q lcl|Aclame:pro 144 ----------------------QGREWMPLAFHHRPQS-------WFQL---------NPEDQNEL---RLR--DNSPAG 180 (526) Q Consensus 144 ----------------------~~g~~~~~~l~~r~~~-------~f~~---------~~~~~~~l---~~~--~~~~~g 180 (526) .+|...+..+..+... -|.. ..+..+.+ +++ .++..+ T Consensus 145 ~~~rPy~~~~~~~~IinW~~~~v~G~~~Lt~v~lrE~~~~~d~~~~f~~~~~~q~RvL~~~~~g~~~~~~~r~~~~g~~~ 224 (489) T protein:vir:78 145 GLLNPTIAFYTTENIVNWRLTRVGSVNRVTMVVLRETWEYNEPGNEFETKYGEQYRVLDIDSDGNYRQRLFRFDAEGGAQ 224 (489) T ss_pred hcCCcEEEEechhhhcCceeeeeCCccceeEEEEEEeEEeecCCCCccceeEEEEEEEecCCCcceEEEEEEeecCCccc Confidence 1332222222222110 0000 00000000 001 011100 Q ss_pred ------------eeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHH Q lcl|Aclame:pro 181 ------------EALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEK 248 (526) Q Consensus 181 ------------~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~ 248 (526) ..+..=-|+++- ....+--.+.+.|..++..-+---....+.-.-+..-+.|+++..-....+++.. T Consensus 225 ~~~~~~~~~~g~~~l~~IPfv~~~-~~~~~~~~~~pPLl~LA~lni~Hy~~ssd~~~~l~~~~~P~l~i~G~d~~~~~~~ 303 (489) T protein:vir:78 225 EDVVEIYPDLGESLRGVIPFTFIG-ATNNDATIDDAPLLPLAELNIGHYRNSADNEESSFVVGQPTLFIYPGENLTPQAF 303 (489) T ss_pred ceeeEEeccCCCCccCeeeEEEEe-cCCCCCCCCcCchHHHHHHHHHHhhhhhHHHHHHHHcccceeeeecCccCCcccc Confidence 111111122222 2223333455555566655443333444555566667888887653333333222 Q ss_pred HHHHHHHHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhc-hhhhcccccccchhhhhhHHHHHHH Q lcl|Aclame:pro 249 ATLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLG-GTLTSTTSQSGGGAFALGQVHNEVR 327 (526) Q Consensus 249 ~~l~~al~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilG-qtltt~~~~~~~gS~a~~~vh~~v~ 327 (526) ......--.++..++..+|.+.+..+++.+..+ -... .++-...++. .+| ..++... +.+++.+ ....... T Consensus 304 ~~~~~~~i~~g~~~~~~lp~~~~~~~ie~~~~~-~~r~-~l~~le~qm~--~lGa~l~~~~~--~~Ta~~~--~~~~~~~ 375 (489) T protein:vir:78 304 KEANPNGIKFGSRRGHNLGYGGSAQLIQAGENN-LARQ-NMLDKEQQAI--QIGAQLITPTQ--QITAQSA--RIQRGAD 375 (489) T ss_pred cccCccceeeCCcccccCCCCCCcceeccCcch-HHHH-HHHHHHHHHH--HHhhhhccCCc--chhHHHH--HHHHHHh Confidence 222222234688889999999999999976432 2233 3333334433 233 3333221 2223332 2334444 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEE--ecC-ccccCHHHHHHHHHHHHhCCCcCCHHHHHHH-- Q lcl|Aclame:pro 328 HDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLV--FDL-REQADITSMAQSIPALVNVGLEIPSAWVYDK-- 402 (526) Q Consensus 328 ~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~--~~~-~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~-- 402 (526) ..++.+-+..+++.++ +++++++.+-.-.... -+.|. .++ ...-|. ...+.+.++.+.|. |+.+.+++. T Consensus 376 ~S~L~~~a~~~e~al~-~~l~~~a~w~G~~~~~---~~~i~~n~dF~~~~~d~-~~~~al~~~~~~G~-is~~t~~~~L~ 449 (489) T protein:vir:78 376 TSVMATIARNVSQAYT-DALRWVAVMLGKPEDT---EVEFRLNMDFFLEPMTA-QDRAAWMADINAGL-LPATAYYAALR 449 (489) T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCC---ceEEEeecccCcccCCH-HHHHHHHHHHhcCC-CCHHHHHHHHH Confidence 6788888999999997 5899999984322111 12232 121 112232 23555666777886 886655443 Q ss_pred -hCCCCCCccchhcccCCCcccc-cccccccccccccccccccccccchHH Q lcl|Aclame:pro 403 -LGIPQPAKNEPVLRSAAQPAIL-SRQHGQRVAALATIVGPRYGDQQALDK 451 (526) Q Consensus 403 -~Glp~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (526) -|+..+...+....-...+.+. ....+... ... |..+. T Consensus 450 ~~gv~d~~~e~~~~ei~~~~~~~~~~~~g~~~---------~~~--q~~~~ 489 (489) T protein:vir:78 450 KAGVTDWTDADIKDAVADQPLPVATEVQGEIP---------QSA--QQQEK 489 (489) T ss_pred hCCCCCccHHHHHHHHhhcCCCcccCCcccCC---------CCc--ccccC Confidence 4665443322211111111100 00011000 000 00000 No 211 >protein:vir:103219 Length: 201 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277473;genbank:gi:71834115;genbank:GeneID:3562330 Probab=95.16 E-value=0.0026 Score=34.73 Aligned_cols=185 Identities=16% Similarity=0.076 Sum_probs=87.1 Q ss_pred EEecCC-----CCCHHHHHHHHHHHHHhhc--CeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcc Q lcl|Aclame:pro 236 LGKYPP-----GTADEEKATLLRAVTGLGH--AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTST 308 (526) Q Consensus 236 vgk~~~-----~~~~~e~~~l~~al~~~~~--~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~ 308 (526) |.|... ...+.+.++-+..+..+.+ ++.++...+.+++.++.+=++. ..++...-.+||-+ .|-.+|-- T Consensus 1 V~k~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ld~~~e~~e~~~~~lsGl---~d~l~~~~~~iaa~-s~iP~t~L 76 (201) T protein:vir:10 1 MWKAKGLADLCDDSDGAARLRLAQVDNNSGVGQAIGIDADSEEYNVLNSDIGGI---DTFLSQKFDRIVAL-SGIHEIIL 76 (201) T ss_pred CccchHHHHHhcCChHHHHHHHHHHHHhhhhhhhheeecCCcceeeeecCcCCh---HHHHHHHHHHHHhH-hcCchhhh Confidence 333210 1112333334444444443 4455556668899998653333 34566666666655 34444443 Q ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccC------H-HHHH Q lcl|Aclame:pro 309 TSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQAD------I-TSMA 381 (526) Q Consensus 309 ~~~~~~gS~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~ed------l-~~~a 381 (526) -+...+|=.|.|+--..+.-+.+++.+.....-+.+.|+..++ .+ ++ -.|+|..-...+ + +..| T Consensus 77 fG~sp~Glnatge~d~~nyyd~i~~~Qe~~l~p~le~l~~~~~----~~---~~--~~~~f~pL~~~s~kekAei~~~~a 147 (201) T protein:vir:10 77 KGKNVGGVSASQNTALETFYGYVDRKRKAELLPLLEFLLPFIV----TE---QE--WSVEFNPLSQVSDKDKSEILEKNV 147 (201) T ss_pred cCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CC---CC--ceEeeCCCCCCCHHHHHHHHHHHH Confidence 4444455556677677778888888875443333333444222 11 11 123443322222 2 4567 Q ss_pred HHHHHHHhCCCcCCHHHHHHHhCCCCCC--ccchhcccCCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 382 QSIPALVNVGLEIPSAWVYDKLGIPQPA--KNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQ 447 (526) Q Consensus 382 ~~~~~l~~~G~~v~~~~~~e~~Glp~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (526) ++++++++.|+ ++.+++|+++.-.... -++....+....+. ...++..+..+ T Consensus 148 ~a~~~~~~~g~-i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~e-------------~~dp~~~~~~~ 201 (201) T protein:vir:10 148 NSVAALIAAGI-IDADEARDTLRAISTEVKIGEGSIQTEVVINE-------------SEDPLDVSANN 201 (201) T ss_pred HHHHHHHHcCC-CCHHHHHHHHHhcCCcCCCCCCCCCccccccc-------------cCCCCCCCCCC Confidence 88888999997 9999999887321110 00000000000000 00000011100 No 212 >protein:vir:95014 Length: 491 # NCBI annotation: structural protein # Family: family:all:584 # MgeID: mge:1547 # MgeName: KS7 # Cross-refs: genbank:acc:YP_224035;genbank:gi:62327322;genbank:GeneID:5176842 Probab=94.63 E-value=0.0039 Score=33.79 Aligned_cols=407 Identities=13% Similarity=0.055 Sum_probs=175.8 Q ss_pred eecCCCCccCccccchh---hhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHH--HHHHHHHHHHhc---cHHHH Q lcl|Aclame:pro 4 IVDVYGNPIRTQQLREP---QTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQ--AQAELFMDMEER---DAHLF 75 (526) Q Consensus 4 ~~~~~g~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~--~~~~l~~~m~~~---D~~v~ 75 (526) .+..+|+--+++..... ..+....++..+.+-- + ...+++....+. .-..-|+..+.+ =+++. T Consensus 1 ~~~~~~~~~~V~~~hp~y~a~~~~W~~ird~~~G~~----~-----~~~r~~yl~~~~~~~~e~~Y~~rl~rA~~~n~~~ 71 (491) T protein:vir:95 1 MLTANGQGSGVKTKHREWLHYAPKWQKVRHALAGDL----V-----GYLRNVGLNEPDKAYGEARQAEYEAGGIVYNFTR 71 (491) T ss_pred CcccCCccCCCCccCHHHHHHHHHHHHHHHHhcCcc----h-----hhcccCCCcCCCCCCCHHHHHHHHhcccCCChHH Confidence 55677776555543322 1122222232222100 0 000111111000 001123333332 45666 Q ss_pred HHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEee----------- Q lcl|Aclame:pro 76 AEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWAL----------- 143 (526) Q Consensus 76 s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~----------- 143 (526) ..+..-...|.+.+..++.+ ..+..+++.+=..-.+++.+++.++ .++.||.+.+=+.+-. T Consensus 72 ~tl~~l~G~vfrk~p~~~~p-------~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~T~Ade~~ 144 (491) T protein:vir:95 72 RTLSGMVGSVMRKEPEINIP-------KELEYLLKNADGSGVGLIQHAQDTLMEIDSVGRGGLLVDAPETAAATAAEQNA 144 (491) T ss_pred HHHHHHhchhhcCCceeecc-------HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCeEEEEEecCCCcccCHHHHHH Confidence 66666666777777666421 1233332222111124788888777 4777887765444421 Q ss_pred ----------------------cCCeeEEeeeeeecCc-------eeE-----------ecccCCceEE-ecc--CCCC- Q lcl|Aclame:pro 144 ----------------------QGREWMPLAFHHRPQS-------WFQ-----------LNPEDQNELR-LRD--NSPA- 179 (526) Q Consensus 144 ----------------------~~g~~~~~~l~~r~~~-------~f~-----------~~~~~~~~l~-~~~--~~~~- 179 (526) .+|...+..+..+... -|. .+.++....+ ++. .+.. T Consensus 145 ~~~rPy~~~~~~~~IinW~~~~v~g~~~L~~v~l~E~~~~~d~~~~f~~~~~~qyRvL~l~~~g~~~~~v~r~~~~g~~~ 224 (491) T protein:vir:95 145 GLLNPTIAFYTTENIVNWRLTRVGSVNRVTMVVLRETWEYHEPGNEFETKYGEQYRVLDIDTDGNYRQRLFRFDAEGGAQ 224 (491) T ss_pred hcCCcEEEEechhhhcCceeeeeCCceeeeEEEEEEeEEeecCCCCcccceEEEEEEEeecCCCceEEEEEEEcCCCcce Confidence 1222222222222110 000 0000100000 010 0100 Q ss_pred -----------ceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHH Q lcl|Aclame:pro 180 -----------GEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEK 248 (526) Q Consensus 180 -----------g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~ 248 (526) +..+..=-|+++- ....+-..+.+.|..++..-+---....+.-.-+..-+.|+++..-....+++.. T Consensus 225 ~~~~~~~~~~g~~~l~~IPfv~~~-~~~~~~~~~~pPLl~LA~lni~Hy~~ssd~~~~l~~~~~P~l~~~G~d~~~~~~~ 303 (491) T protein:vir:95 225 EEVVEIYPDLGESLRGVIPFTFIG-ATNNDATIDDAPLLPLAELNIGHYRNSADNEESSFVVGQPTLFIYPGDNLTPQSF 303 (491) T ss_pred eeeeeeeecCCCcccCeeEEEEEe-cCCCCCCCCcCchHHHHHHHHHHhhhhhHHHHHHHHcccceeeeecCcccCcchh Confidence 0111111122222 2233444456656666655443333344455566667888888764433333322 Q ss_pred HHHHHHHHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHH Q lcl|Aclame:pro 249 ATLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRH 328 (526) Q Consensus 249 ~~l~~al~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~ 328 (526) ......--.++.+++..+|.+.+..+++++..+. .... ++-...++.. +|-.|.+. +.+.+++.+ ........ T Consensus 304 ~~~~~~~i~~g~~~~~~lP~~~~~~~ie~~~~~~-~~~~-l~~~e~qm~~--~Ga~l~~~-~~~~Ta~~~--~~~~~~~~ 376 (491) T protein:vir:95 304 KEANPNGIKFGSRCGHNLGYGGSAQLIQAGENNL-ARQN-MLDKEQQAIQ--IGAQLITP-SQQITAESA--RIQRGADT 376 (491) T ss_pred hccCcceeEecCcCCcCCCCCCccceeecCcchH-HHHH-HHHHHHHHHH--HHHHhccC-CcchhHHHH--HHHHHHhh Confidence 2222222346788889999999999999764332 3333 3333333333 33333321 112233332 23344446 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEe--cCc-cccCHHHHHHHHHHHHhCCCcCCHHHHHH---H Q lcl|Aclame:pro 329 DLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVF--DLR-EQADITSMAQSIPALVNVGLEIPSAWVYD---K 402 (526) Q Consensus 329 ~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~--~~~-e~edl~~~a~~~~~l~~~G~~v~~~~~~e---~ 402 (526) .++.+-+..+++.++ +++++++.+-.-.... -+.|.+ ++. ...|. ...+++.++.+.|. ++.+.+++ + T Consensus 377 S~L~~~a~~~e~al~-~~l~~~a~w~G~~~~~---~v~i~~n~dF~~~~~~~-~~~~all~~~~~G~-is~~t~~~~L~~ 450 (491) T protein:vir:95 377 SVMATIARNVSQAYT-DALRWVAMMLGKPEDS---EVEFQLNMDFFLQPMTA-QDRAAWMADINAGL-LPATAYYAALRK 450 (491) T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCC---ceEEEeecccccccCCH-HHHHHHHHHHhcCC-CCHHHHHHHHHh Confidence 788888999999997 5899999885322111 122322 211 12232 24566666777786 88765544 3 Q ss_pred hCCCCCCccchhcccCCCccccc---cccccccccccccccc Q lcl|Aclame:pro 403 LGIPQPAKNEPVLRSAAQPAILS---RQHGQRVAALATIVGP 441 (526) Q Consensus 403 ~Glp~~~~~e~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 441 (526) .|++.+..+++...-...+.+.. +..+....+ +....+ T Consensus 451 ~~vl~~~~e~~~~~ie~~~~~~~~~~~~~~~~~~~-~~~~~~ 491 (491) T protein:vir:95 451 AGVTDWTDEDILNAIEDAPLPSGAVTQVAGEIPQA-AQQQQE 491 (491) T ss_pred CCCCCccHHHHHHHHHhcCCCCCccccccccchhh-hhhccC Confidence 47876554433322111111110 001100000 000000 No 213 >protein:vir:4782 Length: 522 # NCBI annotation: putative minor capsid protein 1 # Family: family:all:898 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150162;swissprot:trembl:q94m49;genbank:gi:26553451;uniprot:Q94M49;genbank:GeneID:955983 Probab=93.86 E-value=0.0061 Score=32.71 Aligned_cols=420 Identities=10% Similarity=0.078 Sum_probs=165.1 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHccc--CCCHHHH--HHHHHHHHh---ccHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAE--QGNLQAQ--AELFMDMEE---RDAH 73 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~--~g~~~~~--~~l~~~m~~---~D~~ 73 (526) |+ +++.--+-|+.-. .+-.+.. + ..+..|+.-.+++..+.++.+... .|+.... ......... .-.- T Consensus 1 m~-~~~~~k~~~~k~~-~~~~~~~---~-~~i~~~~~i~~~~~~~~~i~~~~~~y~g~~~~~~~~~~~~~~~~~~~~sln 74 (522) T protein:vir:47 1 MS-LFQKVKDFFSRGR-YYMQTSN---L-NSILEHPKIAVTQEEYDRIKRNLVYYQSKWDDVQYKNTDGDIKSRPMNHLP 74 (522) T ss_pred Cc-hHHHHHHHHHHHH-HHhhccc---c-hhccccCCCCCCHHHHHHHHHHHHHhcCCcccccccccCcchhcccceecc Confidence 66 3333333232111 0000111 1 112233333344454444332210 1111100 000000000 0001 Q ss_pred HHH-HHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeec------- Q lcl|Aclame:pro 74 LFA-EMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQ------- 144 (526) Q Consensus 74 v~s-~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~------- 144 (526) +.. ...+--+-|++-+-.|... +.+..+++.+++.+. .|...+...+ .|...|=.++-+.|+.. T Consensus 75 l~~~i~~~~A~lv~~e~~~i~v~------d~~~~~~l~~~l~~n-~f~~~~~~~~e~a~a~G~~a~k~~~d~~~~~i~~v 147 (522) T protein:vir:47 75 IARTASKKIASLVYNEQATITTK------NEILQKFLDDMLTND-RFNKNFERYLESCLALGGLAMRPYIDGDKVRVAFI 147 (522) T ss_pred hHHHHHHHHhhhhcCCcceeecC------ChHHHHHHHHHHhhc-chHHHHHHHHHHhhccCCEEEEEEEcCCceEEEEE Confidence 112 2222333344444445432 235667888888654 4666666555 68888877777666421 Q ss_pred -CCeeEEee----------eeee-----cCc--e---eEecc--------------cCCceE---EeccCC--CCce--- Q lcl|Aclame:pro 145 -GREWMPLA----------FHHR-----PQS--W---FQLNP--------------EDQNEL---RLRDNS--PAGE--- 181 (526) Q Consensus 145 -~g~~~~~~----------l~~r-----~~~--~---f~~~~--------------~~~~~l---~~~~~~--~~g~--- 181 (526) .+.+.|.. +.++ ... + ..++. .+...+ +++... .-|. T Consensus 148 ~ad~~~P~~~~~~~~~e~a~~~~~~~~~~~~~~~yt~lE~he~~~~~~~~~~~~~~~~~~~I~n~ly~~~~~~~lG~~v~ 227 (522) T protein:vir:47 148 QAPVFFPLESNTQDVSSAAILTKTIKSEGRKNVYYTLVEFHEWVTADGQETGSTNDKKYYRITNELYRSDVNDVLGQRVN 227 (522) T ss_pred cCCceEEEEEcCCceEEEEEEEEEEeecccceeEEEEEEEeeecccccccccccccCCceEEEEEEeecCCCcccCcccc Confidence 11122210 0000 000 0 11100 000111 111100 0011 Q ss_pred --------eecC---------CCeEEEe----ecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEE---- Q lcl|Aclame:pro 182 --------ALQP---------FGWIIHR----PRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRL---- 236 (526) Q Consensus 182 --------~lp~---------~k~i~~~----~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~v---- 236 (526) .+++ .-|++++ .....++|+|.|.+..+....-.-...+..|..=++.--..+.| T Consensus 228 l~~~~e~~~l~~~~~~~~~~~Plf~y~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v~~~~ 307 (522) T protein:vir:47 228 LSELDKYKNLEPVTVFENLSRPLFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINRSYDEFMWEVRMGQRRVIVPEHL 307 (522) T ss_pred ccccccccCCCCceEeCCCCcceEEEecCCcccccccCCCcCCchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHH Confidence 1111 1133332 22345789999999999866655555555555444432222222 Q ss_pred EecC-CCCCHH-H-------HHHHHHHHHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHH-hch-hh Q lcl|Aclame:pro 237 GKYP-PGTADE-E-------KATLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAV-LGG-TL 305 (526) Q Consensus 237 gk~~-~~~~~~-e-------~~~l~~al~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~i-lGq-tl 305 (526) .+.. ++.+.+ . .+.+..++ ..+. +.+..|+..... --.+.|...++.+-+.|+..+ +++ |+ T Consensus 308 l~~~~~~~~g~~~~~~~fd~~~~~f~~~---~~~~----~~~~~i~~~~~~-ir~e~~~~~~~~~l~~i~~~~gls~~tf 379 (522) T protein:vir:47 308 TQRQYQRPDGTIDFRPRFDVEQNVYMQI---GGSS----MDAGGITDLTSP-IRANDYILAISEGLKLFEMQIGVSSGMF 379 (522) T ss_pred hccCCCCCCcccccccccCcccceEeec---CCCC----CCCCcceeeccc-cChHHHHHHHHHHHHHHHHHhCCCcccc Confidence 2211 111000 0 01111111 1110 111224333321 122335555555555554443 443 33 Q ss_pred hcccccccchhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c----CCCCCCcccceeEEecCccccCHH Q lcl|Aclame:pro 306 TSTTSQSGGGAFALGQVHN--EVRHDLLASDARQLAATLSRDLLWPLLVL-N----RPGSPDVRRAPRLVFDLREQADIT 378 (526) Q Consensus 306 tt~~~~~~~gS~a~~~vh~--~v~~~~~~ad~~~i~~~ln~~li~~l~~~-N----f~~~~~~~~~p~~~~~~~e~edl~ 378 (526) +. .+ ++...| .++.. .-...-+..-.+.+..+| ++|+..++.+ + +.+..+....+.+.|+..-.+|.+ T Consensus 380 ~~-~~--~~~kTA-tEi~s~~~~~~~t~~~~~~~~~~al-~~lv~~i~~l~~~~~~~~~~~~~~~~i~v~f~D~i~~D~~ 454 (522) T protein:vir:47 380 TF-DG--QGMKTA-TEIVSENSDTYQMRSSIVALVEQSI-KELCVSMCELGKAVGVYSGEIPELDDISVNLDDGVFTDRH 454 (522) T ss_pred Cc-cc--cccccH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhccCCCCCcceeEEEcCCCCCCCHH Confidence 22 11 112222 24422 222334455667777777 4677777744 2 111222223466788877789999 Q ss_pred HHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccccccccccccc Q lcl|Aclame:pro 379 SMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQA 448 (526) Q Consensus 379 ~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (526) +.++.+.+++.+|+--...++.+.||+.+.+..+++..-....+ +..+...................- T Consensus 455 ~~~~~~~~~v~aG~~s~e~~i~~~~g~~eeea~~el~ri~~E~~--~~~~~~~~~~~~~~~~~~~~d~~~ 522 (522) T protein:vir:47 455 AELDYWAKMVAAGFSTKKRAIGKTLNISGVEAEKELNAINSELL--PMNDAELAIYGMHDQNEEKADDKG 522 (522) T ss_pred HHHHHHHHHHhcCCCCHHHHHHhcCCCChHHHHHHHHHHHHhhc--cCCCCCCCCCCCCCcccccCCCCC Confidence 99999999999998555567888889876543333322111100 000000000000000000000000 No 214 >protein:vir:98883 Length: 517 # NCBI annotation: portal # Family: family:all:898 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164413;genbank:gi:56694903;genbank:GeneID:3197273 Probab=93.12 E-value=0.0087 Score=31.88 Aligned_cols=417 Identities=9% Similarity=0.056 Sum_probs=159.6 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccC------HHHHHHHHHcccCCCHHHHHHHHH---HHHhc- Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLT------PAKLARILVEAEQGNLQAQAELFM---DMEER- 70 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~l~~a~~g~~~~~~~l~~---~m~~~- 70 (526) |+ +++.--+-|+.-..+ .-...+.. +..++.-.++ +.+|..+. .|+...+...-- ...++ T Consensus 1 m~-~~~~ik~~~~~~~~~-~~~~~~~~----~~~~~~i~~~~~~~~~I~~w~~~Y----~g~~~~~~~~~~~~~~~~~~~ 70 (517) T protein:vir:98 1 MK-VIQRIKNFFKRGGYA-LSGQTLKS----INDHEKINIDPNELARIERNLRQY----EGDYPQVEYINSQGKIQERDY 70 (517) T ss_pred Cc-hHHHHHHHHHHHHHH-hcccchhH----hhcCCceecCHHHHHHHHHHHHHh----cCCCcccccccccccccccce Confidence 32 111111111000000 00000000 0000000011 11122211 111111000000 00000 Q ss_pred -cHHHHH-HHHHHHHHHhcCCceEecCCCC-----CHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEe Q lcl|Aclame:pro 71 -DAHLFA-EMSKRKRAILGLDWAVEPPRNA-----SAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWA 142 (526) Q Consensus 71 -D~~v~s-~l~~Rk~av~~~~w~v~~~~~~-----~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~ 142 (526) ---+.. +..+.-+.|.+-.-+|...+.. ....+...+++.+++.+. .|...+...+ +++..|=.++-+.|+ T Consensus 71 ~sl~~~~~i~~~~A~Ll~~e~~~i~v~d~~~~~~~~~~~~~~~e~l~~i~~~n-~f~~~~~~~~e~a~a~G~~a~k~~~d 149 (517) T protein:vir:98 71 MTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHN-KFIKNLSDYLEPTFALGGLTVRPYVD 149 (517) T ss_pred eecCcHHHHHHHhhhhhcCCcceEEecccccccccccchhHHHHHHHHHHHhc-cHHHHHHHHHHHHhhhCCEEEEEEEe Confidence 000111 2223333344444444433211 122344678888888764 3666666554 688889888877775 Q ss_pred ecC--------CeeEEee----------eeee--c----C----ceeEeccc-------CCceE---EeccC--CCCcee Q lcl|Aclame:pro 143 LQG--------REWMPLA----------FHHR--P----Q----SWFQLNPE-------DQNEL---RLRDN--SPAGEA 182 (526) Q Consensus 143 ~~~--------g~~~~~~----------l~~r--~----~----~~f~~~~~-------~~~~l---~~~~~--~~~g~~ 182 (526) ... ..+.|-. +..+ . . .+..++.- +...+ +++.. ..-|.+ T Consensus 150 ~~~~~I~~v~ad~~~Pl~~~~~~v~~~ai~~~~~~~~~~~~~~Yt~lE~H~~~~~~~~~~~y~I~n~ly~s~~~~~lG~~ 229 (517) T protein:vir:98 150 NGEIEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKR 229 (517) T ss_pred CCeeEEEEEcCCeeEEEEecCCCeEEEEEEEEEEEeecCCceEEEEEEEEecCceeccCCcEEEEEEEEecCCCcccccc Confidence 321 1222200 0000 0 0 00011100 00000 11111 111211 Q ss_pred e---------cCC---------CeEEEe----ecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEE---- Q lcl|Aclame:pro 183 L---------QPF---------GWIIHR----PRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRL---- 236 (526) Q Consensus 183 l---------p~~---------k~i~~~----~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~v---- 236 (526) + ++. -|.+++ .+...++|+|.|.+..+....-.-...+..|+.=++.-...+.| T Consensus 230 v~L~~~~e~l~~~~~~~g~~~Plf~y~~~p~~N~~~~~splG~S~~~~a~~~~d~lD~~~s~~~~e~~~g~~~i~vp~~~ 309 (517) T protein:vir:98 230 IPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVM 309 (517) T ss_pred ccccccccCCCcceeECCCCcceEEEecCCcccccccCCCCCCchhhhhHHHHHHHHHHHHHHHHHHHhCCcceecChhh Confidence 1 111 122222 22234789999999999877777776666666655552222222 Q ss_pred EecCCCCCH-------HHHHHHHHHHHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHH-hch-hhhc Q lcl|Aclame:pro 237 GKYPPGTAD-------EEKATLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAV-LGG-TLTS 307 (526) Q Consensus 237 gk~~~~~~~-------~e~~~l~~al~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~i-lGq-tltt 307 (526) .+..+.... +..+.+...+. +.. .+..|+.... .--.+.|.+-++.+=++|...+ +++ |++. T Consensus 310 l~~~~~~~g~~~~~~~d~~~~~y~~~~-~~~-------~~~~i~~~~~-~iR~e~~~~~~~~~L~~i~~~~Gls~~t~~~ 380 (517) T protein:vir:98 310 LRTVPDESGMPPPQVFDPDVNVYKSIR-MGT-------DEEFVKDVTH-DIRTEQYKEAINQALRTLEMELKLSVGTFSF 380 (517) T ss_pred hccccCCCCcccCCCCCcccceeeecc-CCC-------CCCceeeecc-ccchHHHHHHHHHHHHHHHHHhCCCcccccc Confidence 221111100 00111111111 000 0111222211 1111235555555555554433 443 4432 Q ss_pred ccccccchhhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCCCCcccceeEEecCccccCHHHH Q lcl|Aclame:pro 308 TTSQSGGGAFALGQVHNE--VRHDLLASDARQLAATLSRDLLWPLLVL-----NRPGSPDVRRAPRLVFDLREQADITSM 380 (526) Q Consensus 308 ~~~~~~~gS~a~~~vh~~--v~~~~~~ad~~~i~~~ln~~li~~l~~~-----Nf~~~~~~~~~p~~~~~~~e~edl~~~ 380 (526) + + .|...+.++-.+ -...-+.+-.+.+..+|. +|++.++.+ .+++..+....+.+.|+..-.+|.++. T Consensus 381 ~-~---~~~kTATEi~s~~~~~~~t~~~~~~~~~~aL~-~lv~~i~~l~~~~~~~~~~~~~~~~v~v~f~D~i~~D~~~~ 455 (517) T protein:vir:98 381 D-G---RSMKTATEIVSENDLTYRTRNDHVYEVEQFIK-GLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSAL 455 (517) T ss_pred c-c---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCCCCCCcceEEEcCCCCCCCHHHH Confidence 2 2 122212233222 222344556667777774 577666532 233333333346788888888999999 Q ss_pred HHHHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 381 AQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQ 447 (526) Q Consensus 381 a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (526) ++...+++..|+--...++.+.||+.+.+..+++..-....+.. .+..... ..... .....+ T Consensus 456 ~~~~~~~v~aG~ms~~~~i~~~~g~~eeeA~~e~~~i~~E~~~~--~~~~~~~--~~~~~-~~gd~e 517 (517) T protein:vir:98 456 LRFYGQAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIEL--DPVTISQ--RAQKR-MFGDEE 517 (517) T ss_pred HHHHHHHHhcCCCCHHHHHHHhCCCChHHHHHHHHHHHHhcccc--CCCCccc--cccCC-CCCCCC Confidence 99999999999855566788999987654433332211111100 0000000 00000 000000 No 215 >protein:vir:3028 Length: 500 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438141;genbank:gi:16271804;genbank:GeneID:929241 Probab=93.12 E-value=0.0087 Score=31.88 Aligned_cols=412 Identities=10% Similarity=0.082 Sum_probs=165.6 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHc--ccCCCHHH--HHHHHHHHHhccH---- Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVE--AEQGNLQA--QAELFMDMEERDA---- 72 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~--a~~g~~~~--~~~l~~~m~~~D~---- 72 (526) |+ +.+.--+-|+...-+ --+..+.. +..++.-.+++..+.++-+. --.|+... +........ .+. T Consensus 1 m~-~~~~~k~~~~~~~~~-~~~~~~~~----~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~-~~~~~sl 73 (500) T protein:vir:30 1 MG-VIQKIKNLVTRSKYV-MTTQSLTN----ITDHPKIAISKLEYDRITTNLKYYKSDWDSVLYLNTDGETK-KRDLNHL 73 (500) T ss_pred Cc-hHHHHHHHHHHHHHH-hhcchhhh----hhccccccCCHHHHHHHHHHHHHhcCCCCCcccccCCCCcc-cCceeec Confidence 55 333333332211000 00011111 11122222333322222110 00011000 000000000 000 Q ss_pred HH-HHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecC----- Q lcl|Aclame:pro 73 HL-FAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQG----- 145 (526) Q Consensus 73 ~v-~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~----- 145 (526) -+ .....+--+-|++-+-.|... +....+++.+++.+. .|...+...+ .|..+|=.++-+.|+... T Consensus 74 nl~~~i~~~~A~lv~~e~~~i~~~------d~~~~~~l~~il~~n-~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~~I~~ 146 (500) T protein:vir:30 74 PIARTAAKKIASLVFNEQAEIKVD------DDAANEFISETLKND-RFNKNFERYLESCLALGGLAMRPYVDGDKVRVAF 146 (500) T ss_pred chHHHHHHHHhhhhcCCcceEecC------ChHHHHHHHHHHhhc-cHHHHHHHHHHHHhhcCCEEEEEEEeCCceEEEE Confidence 01 112223333455544455432 235677888888764 4666666555 688889888777775321 Q ss_pred ---CeeEEe----------eeeee--c-----Cc---eeEecc---cCCceE---EeccCC--CCcee---------ecC Q lcl|Aclame:pro 146 ---REWMPL----------AFHHR--P-----QS---WFQLNP---EDQNEL---RLRDNS--PAGEA---------LQP 185 (526) Q Consensus 146 ---g~~~~~----------~l~~r--~-----~~---~f~~~~---~~~~~l---~~~~~~--~~g~~---------lp~ 185 (526) ..+.|. .+..+ . .. ...++. .....+ +++... .-|.+ +++ T Consensus 147 v~ad~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~ 226 (500) T protein:vir:30 147 VQAPVFLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEVYKDLKD 226 (500) T ss_pred EcCCeeEEEEEcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccccccCCcCc Confidence 111110 00000 0 00 000110 001111 111111 01111 111 Q ss_pred C---------CeEEEe----ecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEE-----ecC-CCCCHH Q lcl|Aclame:pro 186 F---------GWIIHR----PRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLG-----KYP-PGTADE 246 (526) Q Consensus 186 ~---------k~i~~~----~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vg-----k~~-~~~~~~ 246 (526) . -|.+++ .....++|+|.|.+..+....-.-...+..|+.-++. |-+..+. +.. .+.+.+ T Consensus 227 ~~~~~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~-g~~~i~v~~~~l~~~~~~~~g~ 305 (500) T protein:vir:30 227 EAKVTDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKM-GQRRVAVPESLTALTVRTTDGD 305 (500) T ss_pred ceEeccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHh-CcceeeechHHhcccCCCCCcc Confidence 1 133332 2334688999999999998877777777777776665 3332221 111 111100 Q ss_pred HHHHHHHHHHHhhcCeEEEecC----CceEEEeecCCCChHHHHHHHHHHHHHHHHHH-hch-hhhcccccccchhhhhh Q lcl|Aclame:pro 247 EKATLLRAVTGLGHAAAGIIPE----TMAIDFQQAAQGSSEPFLAMMRQSEDAISKAV-LGG-TLTSTTSQSGGGAFALG 320 (526) Q Consensus 247 e~~~l~~al~~~~~~~~~iip~----~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~i-lGq-tltt~~~~~~~gS~a~~ 320 (526) . +..........-+..++. +..|+..+.. --.+.|...++.+=++|+..+ +++ +++.+ ++ +-..|. T Consensus 306 ~---~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~-ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~-~~--g~~TAt- 377 (500) T protein:vir:30 306 V---VPRPRFESDQNVYIRMGGRDLDSSAIQDLTTP-IRADDYIKAINEGLSLFEMQIGVSAGLFSFD-GK--SMKTAT- 377 (500) T ss_pred c---cCCcccCCCcceEEEcCCCCCcCcceeEeccc-cChHHHHHHHHHHHHHHHHHhCCCccccccC-cC--ccccHH- Confidence 0 000001111112222221 1224444321 122345555665656665443 333 23221 11 111232 Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCC-CCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCc Q lcl|Aclame:pro 321 QVH--NEVRHDLLASDARQLAATLSRDLLWPLLVL----NRP-GSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLE 393 (526) Q Consensus 321 ~vh--~~v~~~~~~ad~~~i~~~ln~~li~~l~~~----Nf~-~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~ 393 (526) ++. +.-...-+..-.+.+..+|. +|++.++.+ ++. +..+...-+.+.|+..-.+|.++.++.+.+++.+|+- T Consensus 378 ei~s~~~~~~~t~~~~~~~~~~al~-~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~aGi~ 456 (500) T protein:vir:30 378 EIVSENSDTYQMRNSIVALVEQSLK-ELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELDYWIKVVNAGFG 456 (500) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHHHHHHHHHcCCC Confidence 332 22233344456667777774 577777643 222 2222222356778777788989999999999999984 Q ss_pred CCHHHHHHHhCCCCCCccchhcccCCCc-ccccccccccccccccccccccccccchHHHHHH Q lcl|Aclame:pro 394 IPSAWVYDKLGIPQPAKNEPVLRSAAQP-AILSRQHGQRVAALATIVGPRYGDQQALDKALAD 455 (526) Q Consensus 394 v~~~~~~e~~Glp~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (526) -...++.+.||+++.+..+.+..-.... +........ . +.+.+ T Consensus 457 s~~~~i~~~~g~~eeea~~~l~~i~~E~~~~~~~~~~~-~------------------~~~g~ 500 (500) T protein:vir:30 457 TREMAIQKVLNVTEEKAQEIAAEINTGIVDEINQQRTD-T------------------HLYGE 500 (500) T ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHhccccCCCCCcc-c------------------cccCC Confidence 4455677888986543322222111100 000000000 0 00000 No 216 >protein:vir:9815 Length: 500 # NCBI annotation: putative minor capsid protein # Family: family:all:898 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795577;genbank:gi:28876344;genbank:GeneID:1257866 Probab=93.12 E-value=0.0087 Score=31.88 Aligned_cols=412 Identities=10% Similarity=0.082 Sum_probs=165.6 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHc--ccCCCHHH--HHHHHHHHHhccH---- Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVE--AEQGNLQA--QAELFMDMEERDA---- 72 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~--a~~g~~~~--~~~l~~~m~~~D~---- 72 (526) |+ +.+.--+-|+...-+ --+..+.. +..++.-.+++..+.++-+. --.|+... +........ .+. T Consensus 1 m~-~~~~~k~~~~~~~~~-~~~~~~~~----~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~-~~~~~sl 73 (500) T protein:vir:98 1 MG-VIQKIKNLVTRSKYV-MTTQSLTN----ITDHPKIAISKLEYDRITTNLKYYKSDWDSVLYLNTDGETK-KRDLNHL 73 (500) T ss_pred Cc-hHHHHHHHHHHHHHH-hhcchhhh----hhccccccCCHHHHHHHHHHHHHhcCCCCCcccccCCCCcc-cCceeec Confidence 55 333333332211000 00011111 11122222333322222110 00011000 000000000 000 Q ss_pred HH-HHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-HhhhhcceeeeEEEeecC----- Q lcl|Aclame:pro 73 HL-FAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQG----- 145 (526) Q Consensus 73 ~v-~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~----- 145 (526) -+ .....+--+-|++-+-.|... +....+++.+++.+. .|...+...+ .|..+|=.++-+.|+... T Consensus 74 nl~~~i~~~~A~lv~~e~~~i~~~------d~~~~~~l~~il~~n-~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~~I~~ 146 (500) T protein:vir:98 74 PIARTAAKKIASLVFNEQAEIKVD------DDAANEFISETLKND-RFNKNFERYLESCLALGGLAMRPYVDGDKVRVAF 146 (500) T ss_pred chHHHHHHHHhhhhcCCcceEecC------ChHHHHHHHHHHhhc-cHHHHHHHHHHHHhhcCCEEEEEEEeCCceEEEE Confidence 01 112223333455544455432 235677888888764 4666666555 688889888777775321 Q ss_pred ---CeeEEe----------eeeee--c-----Cc---eeEecc---cCCceE---EeccCC--CCcee---------ecC Q lcl|Aclame:pro 146 ---REWMPL----------AFHHR--P-----QS---WFQLNP---EDQNEL---RLRDNS--PAGEA---------LQP 185 (526) Q Consensus 146 ---g~~~~~----------~l~~r--~-----~~---~f~~~~---~~~~~l---~~~~~~--~~g~~---------lp~ 185 (526) ..+.|. .+..+ . .. ...++. .....+ +++... .-|.+ +++ T Consensus 147 v~ad~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~ 226 (500) T protein:vir:98 147 VQAPVFLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEVYKDLKD 226 (500) T ss_pred EcCCeeEEEEEcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccccccCCcCc Confidence 111110 00000 0 00 000110 001111 111111 01111 111 Q ss_pred C---------CeEEEe----ecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEE-----ecC-CCCCHH Q lcl|Aclame:pro 186 F---------GWIIHR----PRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLG-----KYP-PGTADE 246 (526) Q Consensus 186 ~---------k~i~~~----~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vg-----k~~-~~~~~~ 246 (526) . -|.+++ .....++|+|.|.+..+....-.-...+..|+.-++. |-+..+. +.. .+.+.+ T Consensus 227 ~~~~~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~-g~~~i~v~~~~l~~~~~~~~g~ 305 (500) T protein:vir:98 227 EAKVTDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKM-GQRRVAVPESLTALTVRTTDGD 305 (500) T ss_pred ceEeccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHh-CcceeeechHHhcccCCCCCcc Confidence 1 133332 2334688999999999998877777777777776665 3332221 111 111100 Q ss_pred HHHHHHHHHHHhhcCeEEEecC----CceEEEeecCCCChHHHHHHHHHHHHHHHHHH-hch-hhhcccccccchhhhhh Q lcl|Aclame:pro 247 EKATLLRAVTGLGHAAAGIIPE----TMAIDFQQAAQGSSEPFLAMMRQSEDAISKAV-LGG-TLTSTTSQSGGGAFALG 320 (526) Q Consensus 247 e~~~l~~al~~~~~~~~~iip~----~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~i-lGq-tltt~~~~~~~gS~a~~ 320 (526) . +..........-+..++. +..|+..+.. --.+.|...++.+=++|+..+ +++ +++.+ ++ +-..|. T Consensus 306 ~---~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~-ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~-~~--g~~TAt- 377 (500) T protein:vir:98 306 V---VPRPRFESDQNVYIRMGGRDLDSSAIQDLTTP-IRADDYIKAINEGLSLFEMQIGVSAGLFSFD-GK--SMKTAT- 377 (500) T ss_pred c---cCCcccCCCcceEEEcCCCCCcCcceeEeccc-cChHHHHHHHHHHHHHHHHHhCCCccccccC-cC--ccccHH- Confidence 0 000001111112222221 1224444321 122345555665656665443 333 23221 11 111232 Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCC-CCCCcccceeEEecCccccCHHHHHHHHHHHHhCCCc Q lcl|Aclame:pro 321 QVH--NEVRHDLLASDARQLAATLSRDLLWPLLVL----NRP-GSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLE 393 (526) Q Consensus 321 ~vh--~~v~~~~~~ad~~~i~~~ln~~li~~l~~~----Nf~-~~~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~G~~ 393 (526) ++. +.-...-+..-.+.+..+|. +|++.++.+ ++. +..+...-+.+.|+..-.+|.++.++.+.+++.+|+- T Consensus 378 ei~s~~~~~~~t~~~~~~~~~~al~-~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~aGi~ 456 (500) T protein:vir:98 378 EIVSENSDTYQMRNSIVALVEQSLK-ELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELDYWIKVVNAGFG 456 (500) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHHHHHHHHHcCCC Confidence 332 22233344456667777774 577777643 222 2222222356778777788989999999999999984 Q ss_pred CCHHHHHHHhCCCCCCccchhcccCCCc-ccccccccccccccccccccccccccchHHHHHH Q lcl|Aclame:pro 394 IPSAWVYDKLGIPQPAKNEPVLRSAAQP-AILSRQHGQRVAALATIVGPRYGDQQALDKALAD 455 (526) Q Consensus 394 v~~~~~~e~~Glp~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (526) -...++.+.||+++.+..+.+..-.... +........ . +.+.+ T Consensus 457 s~~~~i~~~~g~~eeea~~~l~~i~~E~~~~~~~~~~~-~------------------~~~g~ 500 (500) T protein:vir:98 457 TREMAIQKVLNVTEEKAQEIAAEINTGIVDEINQQRTD-T------------------HLYGE 500 (500) T ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHhccccCCCCCcc-c------------------cccCC Confidence 4455677888986543322222111100 000000000 0 00000 No 217 >protein:vir:79703 Length: 505 # NCBI annotation: minor structural protein gp61 # Family: family:all:898 # MgeID: mge:1873 # MgeName: LL-H # Cross-refs: genbank:acc:YP_001285880;genbank:gi:148750838;genbank:GeneID:5220405 Probab=91.94 E-value=0.014 Score=30.83 Aligned_cols=393 Identities=13% Similarity=0.075 Sum_probs=161.7 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHH------- Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAH------- 73 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~------- 73 (526) |+ +.+.--+.|+.---+..-...+..+ ..++.-.+.+..+.+| +.+..|.+.+.+ T Consensus 1 m~-~~~~ik~~~~~~~~~~~~~~~~~~i----~d~~~i~~~~~~~~~i-------------~~~~~~Y~g~~~~l~~~~~ 62 (505) T protein:vir:79 1 MA-FWDTLKNLFRKGSAAVGMTKSLGQI----IDDPRINLPADEVERI-------------ARDKRYYMDDFKQVTHKNS 62 (505) T ss_pred Cc-hHHHHHHHHHHhhhhhcchhhhhhh----hcccCCCCCHHHHHHH-------------HHHHHHhcCCCcccccccc Confidence 54 3332222221100000000111110 0111111222221111 111111111100 Q ss_pred -------------H-HHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHH-Hhhhhcceeee Q lcl|Aclame:pro 74 -------------L-FAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIE 138 (526) Q Consensus 74 -------------v-~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~E 138 (526) + ..+..+--+-|++-+-.|... ++...+++.+++.+. .|...+...+ .|..+|=.++- T Consensus 63 ~~~~~~~~~~slnl~~~i~~~~A~ll~~e~~~i~~~------d~~~~e~l~~i~~~n-~f~~~~~~~~e~a~a~G~~~~k 135 (505) T protein:vir:79 63 YGDTQKHELQSVNVTKLASAKLASLIFNEQCQVTVS------DETANDFLDDVFQQN-DFYTTFEEKLEEWIALGSGCVR 135 (505) T ss_pred CCCccccceeecchHHHHHHHHHhhhcCCCceeecC------ChHHHHHHHHHHHhc-cHHHHHHHHHHHHhhcCCeEEE Confidence 1 222333344555555555432 235677888888654 3677766655 68889988877 Q ss_pred EEEeecCCeeEEeeeeeecCceeE---------------------------------ecc--cCCceE---EeccCC--C Q lcl|Aclame:pro 139 LEWALQGREWMPLAFHHRPQSWFQ---------------------------------LNP--EDQNEL---RLRDNS--P 178 (526) Q Consensus 139 i~w~~~~g~~~~~~l~~r~~~~f~---------------------------------~~~--~~~~~l---~~~~~~--~ 178 (526) +.|+. +... +.++++..|. ++. ++...+ +++... . T Consensus 136 ~~~D~--~~~~---i~~v~ad~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~I~n~ly~~~~~~~ 210 (505) T protein:vir:79 136 PYVDS--GKIK---LAWATADQVYPLQADTNQVNELAIASRTTEVENHRTIYYTLLEFHQWDHGDYVITNELYRSEAAET 210 (505) T ss_pred EEEeC--CceE---EEEEcCCeeEEEEEcCCCeEEEEEEEEEEEecCCcceEEEEEEEEEecCceEEEEEEEEecCCCCc Confidence 77752 2211 1111111110 000 000010 111100 0 Q ss_pred Ccee-----e---------------cCCCeEEEe----ecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCce Q lcl|Aclame:pro 179 AGEA-----L---------------QPFGWIIHR----PRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPI 234 (526) Q Consensus 179 ~g~~-----l---------------p~~k~i~~~----~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~ 234 (526) -|.+ + +..-|.+++ .....++|+|.|.+..+.-..-.-...+..|+.-++.-...+ T Consensus 211 lG~~v~l~~~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i 290 (505) T protein:vir:79 211 VGINVPLNSLEQYEGLEPQVKITGLKHPLFAFYRNKGANNKNFTSPMGMSLIDNSYTVIDAINRTHDQFVDEVKKGQRRL 290 (505) T ss_pred cCcccchhhcccccccCcceeecCCCcceEEEecCCcccccccCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhcccce Confidence 0111 1 111233332 233457899999999998766666666666666555433332 Q ss_pred EE----Eec-CCCCC--HHHHHHHH----HHHHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHH-hc Q lcl|Aclame:pro 235 RL----GKY-PPGTA--DEEKATLL----RAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAV-LG 302 (526) Q Consensus 235 ~v----gk~-~~~~~--~~e~~~l~----~al~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~i-lG 302 (526) .| .+. +.+.. ......+. +....+..++ .+..|+..... -..+.|...++.+-++|+..+ ++ T Consensus 291 ~v~~~~l~~~~~~~~~~~~~~~~~fd~~~~~y~~~~~~~-----~~~~i~~~~~~-ir~e~~~~~l~~~l~~i~~~~g~s 364 (505) T protein:vir:79 291 IVPAEWLKTGSSYGGQASETHPPMFDPDETVYQAMYGDA-----SEVGFHDATSP-IRVADYQATMDFFLREFENQTGLS 364 (505) T ss_pred eechHHhcccCCCCcccccccccCCCccceeeeeccCCC-----CCCceEEeccc-CCHHHHHHHHHHHHHHHHHHhCCC Confidence 22 111 11111 11111000 1111111111 12235555422 223445555565556665544 33 Q ss_pred h-hhhcccccccchhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C--C------CCCCcccceeEE Q lcl|Aclame:pro 303 G-TLTSTTSQSGGGAFALGQVH--NEVRHDLLASDARQLAATLSRDLLWPLLVLN---R--P------GSPDVRRAPRLV 368 (526) Q Consensus 303 q-tltt~~~~~~~gS~a~~~vh--~~v~~~~~~ad~~~i~~~ln~~li~~l~~~N---f--~------~~~~~~~~p~~~ 368 (526) + +++. .+ .|...+-++. +.-...-+..-.+.+...| ++|+..++.+. + . ....+..-+.|. T Consensus 365 ~~~~~~-~~---~~~~TAtei~s~~~~l~~t~~~~~~~~~~al-~~li~~i~~~~~~~~~~~~g~~~~~~~~~~~~i~v~ 439 (505) T protein:vir:79 365 QGTFTT-SP---SGIQTATEVVTNNSQTYQTRSSYITQVEKTI-KALTYAILELASVPSFYADGQARWTGDVDSLDITIN 439 (505) T ss_pred hhhcCC-Cc---cccchHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccccccccccCCCCceeEEEE Confidence 2 2322 11 2222222332 2223334445556677777 45777666431 1 0 001112235677 Q ss_pred ecCccccCHHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCcccccccccccccccccc Q lcl|Aclame:pro 369 FDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATI 438 (526) Q Consensus 369 ~~~~e~edl~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (526) |+..-..|.++.++...+++..|+--...++.+.+|+++.+-.+++..-....+.. .+. ...+.+. T Consensus 440 f~d~i~~d~~~~~~~~~~~v~~Gi~s~e~~l~~~~~~~eeea~~el~ri~~E~~~~--~p~--~~~~gg~ 505 (505) T protein:vir:79 440 FNDGVFVDQESKRAADLQAVQAQVMPKKQFLMRNYGLDEEEADEWLAQIDAENSTA--EPE--FNQFGGD 505 (505) T ss_pred eCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHhcCCCChHHHHHHHHHHHHhcccc--CCC--chhccCC Confidence 88777899999999999999999844456678888987644333332111110000 000 0000000 No 218 >protein:vir:1587 Length: 508 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695169;swissprot:trembl:o03928;genbank:gi:23455800;interpro:IPR006432;uniprot:O03928;genbank:GeneID:955566 Probab=91.13 E-value=0.017 Score=30.24 Aligned_cols=409 Identities=10% Similarity=0.083 Sum_probs=163.2 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcc--cCCCHHHHHH-HHHHHHhcc----HH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEA--EQGNLQAQAE-LFMDMEERD----AH 73 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a--~~g~~~~~~~-l~~~m~~~D----~~ 73 (526) |+ +.+.-.+-|+...-+--....+.. +..++.-.+++..+.++-+.. -.|+.+.+.. ...--.... -- T Consensus 1 m~-~~~~~k~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~ri~~~~~~y~g~~~~~~~~~~~~~~~~~~~~sln 75 (508) T protein:vir:15 1 MG-LIQRIKDLFWKGAAATGVTGSLSK----ITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTIN 75 (508) T ss_pred CC-hHHHHHHHHHHHHHHhccccchHH----hhcccccccCHHHHHHHHHHHHHhcCCCcccccccCCCCccccceeecc Confidence 55 222222222110000000000000 001111122222222111100 0111000000 000000000 00 Q ss_pred H-HHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHH-HHhhhhcceeeeEEEeecCCeeEEe Q lcl|Aclame:pro 74 L-FAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDA-LDGIGHGYSCIELEWALQGREWMPL 151 (526) Q Consensus 74 v-~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~-lda~~~G~s~~Ei~w~~~~g~~~~~ 151 (526) + ..+..+--+-|.+-+-.|...+++ ...+++.+++.+. .|...+... .+|..+|-.++-+.|+.. ... T Consensus 76 ~~~~i~~~~A~lv~~e~~~i~v~~~~-----~~~e~l~~il~~n-~f~~~~~~~~e~a~a~G~~~~k~~~d~~--~~~-- 145 (508) T protein:vir:15 76 MAKTAARRIASVVFNEKAEIHVKDNN-----EADKFLNDVLEDN-DFKNKFEEALEKGVALGGFAMRPYIDGN--HIK-- 145 (508) T ss_pred hHHHHHHHHHhhhhCCCceEEeCCch-----HHHHHHHHHHHhc-cHHHHHHHHHHHHhhcCceEEEEEEeCC--eeE-- Confidence 1 122233333445544455543321 2335677777653 366655544 478889988877766422 111 Q ss_pred eeeeecCcee---------------------------------Eec---ccCCceE---EeccCCC--Cceee------- Q lcl|Aclame:pro 152 AFHHRPQSWF---------------------------------QLN---PEDQNEL---RLRDNSP--AGEAL------- 183 (526) Q Consensus 152 ~l~~r~~~~f---------------------------------~~~---~~~~~~l---~~~~~~~--~g~~l------- 183 (526) +.++++..| .++ .++...+ +++..+. -|.++ T Consensus 146 -i~~v~ad~~~P~~~d~~~~~~~af~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e 224 (508) T protein:vir:15 146 -IAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPV 224 (508) T ss_pred -EEEEcCCeeEEEEEcCCCeEEEEEEEEEEeecCCCceEEEEEEEEEEecCcceEEEEEEEecCCchhcCcccchhhccc Confidence 111111100 010 0011111 1111110 01111 Q ss_pred ----cC---------CCeEEEe----ecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEE-----ecCC Q lcl|Aclame:pro 184 ----QP---------FGWIIHR----PRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLG-----KYPP 241 (526) Q Consensus 184 ----p~---------~k~i~~~----~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vg-----k~~~ 241 (526) .+ .-|++++ .+...++|+|.|.+..+.-..-.-...+..|+.-+ +.|-+..++ +++. T Consensus 225 ~~~l~~~~~~~g~~~p~f~y~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~-~~~~~~i~v~~~~l~~d~ 303 (508) T protein:vir:15 225 YKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEI-RLGQKHIAVQPGMLRFDD 303 (508) T ss_pred ccCCCcceEecCCCcceeEEecCCccccccCCCCcCCchHhhhHHHHHHHHHHHHHHHHHH-HhcccceeechHHhcCCC Confidence 11 1133332 22345789999999999877766666666666666 455543333 2222 Q ss_pred CCCHHHHHHHHHHHHHhhcCeEEEecC----CceEEEeecCCCChHHHHHHHHHHHHHHHHHH-hchhhhcccccccchh Q lcl|Aclame:pro 242 GTADEEKATLLRAVTGLGHAAAGIIPE----TMAIDFQQAAQGSSEPFLAMMRQSEDAISKAV-LGGTLTSTTSQSGGGA 316 (526) Q Consensus 242 ~~~~~e~~~l~~al~~~~~~~~~iip~----~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~i-lGqtltt~~~~~~~gS 316 (526) +.. . .. .-....+..++. +..|+.++.. -..+.|...++.+-+.|...+ +++.-.+.. +.|. T Consensus 304 ~~~-~----~~----~~~~~~~~~~~~~~~~~~~i~~~~~~-ir~e~~~~~~~~~l~~~~~~~gls~~~f~~~---~~~~ 370 (508) T protein:vir:15 304 EHK-P----TF----DTEQNVYVGVLSDDNNGLGVKDMTTP-IRTVQYKDAIDHFIKEFEVQIGLSTGTFSYS---NDGV 370 (508) T ss_pred CCc-c----cc----CCCCeeEEeccCCCCCCCceeEeecc-cChHHHHHHHHHHHHHHHHHhCCCchhcccc---cCcc Confidence 111 0 00 011112222222 1224444322 122346666666666666665 332211211 1122 Q ss_pred hhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cC--CCC--------CCcccceeEEecCccccCHHHHH Q lcl|Aclame:pro 317 FALGQVH--NEVRHDLLASDARQLAATLSRDLLWPLLVL---NR--PGS--------PDVRRAPRLVFDLREQADITSMA 381 (526) Q Consensus 317 ~a~~~vh--~~v~~~~~~ad~~~i~~~ln~~li~~l~~~---Nf--~~~--------~~~~~~p~~~~~~~e~edl~~~a 381 (526) ..+-++. ..-...-+..-.+.+..+|. +|++.++.+ +. .+. .....-+.|.|+..-.+|.++.+ T Consensus 371 ~TAtei~s~~~~~~~t~~~~~~~~~~al~-~lv~~il~l~~~~~~~~~g~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~ 449 (508) T protein:vir:15 371 KTATEVVSNNSMTYQTRSSYLTMVEKAID-ELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQL 449 (508) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccccccccccccCCcceEEEeCCCCCCCHHHHH Confidence 2122232 22233344556677777774 566665533 21 110 01112256788888889999999 Q ss_pred HHHHHHHhCCCcCCHHHHHHHhCCCCCCccchhcccCCCccccccccccccccccccccc Q lcl|Aclame:pro 382 QSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGP 441 (526) Q Consensus 382 ~~~~~l~~~G~~v~~~~~~e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (526) +...+++.+|+.-...++.+.||+.+.+..+++..-....+.... .+.......+...+ T Consensus 450 ~~~~~~v~aGi~s~e~~i~~~~g~~deea~~el~ri~~E~~~~~~-~~~~~~~~~g~~ge 508 (508) T protein:vir:15 450 EEDAKVLAIGALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTF-EGGRSAILNGGDGE 508 (508) T ss_pred HHHHHHHhcCCCCHHHHHHhcCCCChHHHHHHHHHHHHhccccCc-cccccccCCCCCCC Confidence 999999999985555677888898765433333221111111110 11111111111111 No 219 >protein:vir:97265 Length: 513 # NCBI annotation: hypothetical protein ORF013 # Family: family:all:584 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294521;genbank:gi:149408242;genbank:GeneID:5237130 Probab=91.06 E-value=0.018 Score=30.19 Aligned_cols=403 Identities=11% Similarity=0.066 Sum_probs=174.1 Q ss_pred CCeeecCCCCccCccccchhh----hhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHH----HHHHHHHHh--- Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQ----TSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQ----AELFMDMEE--- 69 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~----~~l~~~m~~--- 69 (526) |+. +.++.-..+-|+ .+....++..+.+ ...+|.++.-.+..+ .+-|+.-+. T Consensus 1 m~~------~~~~~v~~~h~~y~a~~~~W~~ird~~~G-----------~~~~r~~g~~YLPk~~~E~~~~Y~~rl~rA~ 63 (513) T protein:vir:97 1 MAD------KDPKSPATTSGAYDQMLPRWHVIETLLGG-----------TEAMREAGETYLPRHQEETDKGYQERLASAV 63 (513) T ss_pred CCC------CCCCCCCcCCHHHHHHHHHHHHHHHHhcC-----------hHHHHhhcccCCCCCCCCCHHHHHHHHhccc Confidence 663 222211111221 1222222222211 122333332221111 111222221 Q ss_pred ccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCc----CHHHHHHHHHH-hhhhcceeeeEEEee- Q lcl|Aclame:pro 70 RDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDALD-GIGHGYSCIELEWAL- 143 (526) Q Consensus 70 ~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~ld-a~~~G~s~~Ei~w~~- 143 (526) --+++...+..-...|.+.+-++... . .....+. ++.+.+ +++.+++.++. ++-||.+.+=+.+-. T Consensus 64 ~~n~~~~tl~~l~G~vf~k~p~~~~~---~--p~~~~~~---l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~ 135 (513) T protein:vir:97 64 LLNMVEQTLDTLSGKPFSEPIKLNED---V--PKAIEET---ILPDVDLQGNNLDVFARQWFREGMAKALCHVLIDMPRP 135 (513) T ss_pred CCChHHHHHHHHhhhhhhcCcccCcC---c--hHHHHHH---HhhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEecCCC Confidence 14556666666666666665444311 1 1122222 223332 58888888775 888887654443311 Q ss_pred --------------------------------------cCCeeEEeeeeeecC------------ceeEecccCCceEEe Q lcl|Aclame:pro 144 --------------------------------------QGREWMPLAFHHRPQ------------SWFQLNPEDQNELRL 173 (526) Q Consensus 144 --------------------------------------~~g~~~~~~l~~r~~------------~~f~~~~~~~~~l~~ 173 (526) .+|...+..+..+.. .+++.-..+...+ + T Consensus 136 ~~~~~~~~~T~Ade~~~~~rPy~~~~~~e~IinW~~~~v~G~~~L~~v~l~E~~~~~Dgf~~~~~~q~rvL~~g~~~v-~ 214 (513) T protein:vir:97 136 APREDGQPRTLADDRREGLRPYWVMIKPECLLFARSEVINGVEVLQHVRIIEHYMEQDGFAEVCKRRIRVLEPGLVQL-W 214 (513) T ss_pred CCccchhHHhHHHHHhhccCceEEEecHhhhcCcceeccCcceeeeeEEEEEEEeecCCCcceEEEEEEEEeCceEEE-E Confidence 123222222211110 0000000011111 1 Q ss_pred cc--CC--C---------CceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecC Q lcl|Aclame:pro 174 RD--NS--P---------AGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYP 240 (526) Q Consensus 174 ~~--~~--~---------~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~ 240 (526) +. .+ . .+..+..=-|+++. ....+-..+.+.|..++..-+---...++.-..+..-+.|+++..- T Consensus 215 r~~~~~~~~~~e~~~~~~g~~~l~~IP~v~~~-~~~~~~~~~~pPLl~LA~ln~~hy~~~Sd~~~il~~~~~P~l~~~G- 292 (513) T protein:vir:97 215 EPVKKSNAQKEEWALADEWATGLNYVPLVTFY-ADRQGFMMGKPPLLDLAHLNVAHWQSASDQRHILTVSRFPILACSG- 292 (513) T ss_pred EeecCCCccccceEEecCCCCcCCceeEEEEe-cCCCCCCCCccchHHHHHHHHHHHhhhhhHHHHHHhcccceeeeec- Confidence 11 00 0 01112111233332 2233444466666666655554445556666677777888888862 Q ss_pred CCCCHHHHHHHHHHHHHhhcCeEEEecC-CceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhh Q lcl|Aclame:pro 241 PGTADEEKATLLRAVTGLGHAAAGIIPE-TMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFAL 319 (526) Q Consensus 241 ~~~~~~e~~~l~~al~~~~~~~~~iip~-~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~ 319 (526) .++++++. ..+|+++++.+|. +.++.|++.++.+.+.....++.+.++|.. +|-.+......+.++..+ T Consensus 293 --~~~~~~~~-----i~iG~~~~~~lpe~~~~~~yie~~g~~i~~~~~~l~~le~qm~~--~Ga~ll~~~~~~~Ta~a~- 362 (513) T protein:vir:97 293 --ASGEDSDP-----VVVGPNKVLYNPDPAGRFYYVEHTGQAIAAGRTDLKDLEEQMAG--YGAEFLKRKTGGQTATAR- 362 (513) T ss_pred --CCcCCCCc-----eEeeccccccCCCCCCcceeeccCchhHHHHHHHHHHHHHHHHH--HHHHhhccCCccccHHHH- Confidence 22222221 2478899999996 889999998766667677778888888843 344433322212233322 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCc-cccCH-HHHHHHHHHHHhCCCcCCHH Q lcl|Aclame:pro 320 GQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLR-EQADI-TSMAQSIPALVNVGLEIPSA 397 (526) Q Consensus 320 ~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~-e~edl-~~~a~~~~~l~~~G~~v~~~ 397 (526) .........++..-+..+++.++ ++++++..+-...... ++|.+... ...++ ....+.+.++...|. ++.+ T Consensus 363 -~~~~~~~~S~L~~~a~~le~al~-~~l~~~a~wlg~~~~~----~~v~in~dF~~~~~~~~~~~al~~a~~~G~-is~~ 435 (513) T protein:vir:97 363 -ALDSAEATSDLSAMTGLFEDALA-QALDITADWLRLGPNG----GTVELVKDYDLEEMDAPGLQALQVAREKRD-ISRK 435 (513) T ss_pred -HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCc----cEEEeccccCcccCCHHHHHHHHHHHhCCC-CCHH Confidence 34455556778888899999996 5889998876422111 23333211 11122 234566667778887 7765 Q ss_pred HHHHHh---CCCCCCcc-----chhccc---CC-------Cccccccc-cccccc--------ccccccccccccccc Q lcl|Aclame:pro 398 WVYDKL---GIPQPAKN-----EPVLRS---AA-------QPAILSRQ-HGQRVA--------ALATIVGPRYGDQQA 448 (526) Q Consensus 398 ~~~e~~---Glp~~~~~-----e~~~~~---~~-------~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~ 448 (526) .+++.+ |+=.|+.+ +++... +. .++..... .+..+. ......+...+.... T Consensus 436 t~~~~L~r~gvl~~d~d~~~~~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (513) T protein:vir:97 436 TYLNGLRLRGVLPEDFDEDEDWEELMEEISEAMGRAGLDLDPAQKNPPEGGEGEGEGEGEGGEGGEGGEGGGNPGGES 513 (513) T ss_pred HHHHHHHhccCCCccCCHHHHHHHHHHhhhhccCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCC Confidence 444433 45111111 112110 00 00000000 000000 000011111111111 No 220 >protein:vir:106282 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944108;genbank:gi:38640152;genbank:GeneID:2658030 Probab=89.17 E-value=0.028 Score=29.10 Aligned_cols=420 Identities=10% Similarity=0.024 Sum_probs=174.0 Q ss_pred CCeeecCCCCccC---ccccch----hhhhhhhhhhhhh-----hhhhhcccCHHHHHHHHHcccCC--CHHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIR---TQQLRE----PQTSRLAGLAKEF-----AQHPAKGLTPAKLARILVEAEQG--NLQAQAELFMD 66 (526) Q Consensus 1 m~~~~~~~g~p~~---~~~~~~----~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~l~~a~~g--~~~~~~~l~~~ 66 (526) |.++++.+.+-=. .+.++. +..+.-..-...+ ...+..+.-. .+ -.-+.. +-..+.+-|+. T Consensus 5 ~l~lf~f~~k~~e~~~~~~~~~~~~s~~~p~~~dGa~~I~~~~~~~~~~~~~~~-~~----~~~~~~~~n~~eLI~~YR~ 79 (521) T protein:vir:10 5 FLKLLQPWMKDDEKRVQSDLSDRIDSFAVPDTADGAIEVDKQIDTTAPKTAIVQ-SV----LGYAPKIQNTKDLINQYRS 79 (521) T ss_pred hhHHhhhhhhhhhhHHhhhhccCccccccccCCCCceeeccCCCccccccchhh-hh----hccccccchHHHHHHHHHH Confidence 7777777765311 111111 1111111000000 0111111111 11 111111 34456777888 Q ss_pred HHhccHHHHHHHHHHHHHHhcCC-----ceEecCC--CCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHH-hhhhcceeee Q lcl|Aclame:pro 67 MEERDAHLFAEMSKRKRAILGLD-----WAVEPPR--NASAAEKADADYLHELLLDLEGLEDLLLDALD-GIGHGYSCIE 138 (526) Q Consensus 67 m~~~D~~v~s~l~~Rk~av~~~~-----w~v~~~~--~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~ld-a~~~G~s~~E 138 (526) |. .++.|-++++-....+.-.+ -.|.-.. -++...+++.+..+.+++-+ +|+.-..++.. -.-.|--.+. T Consensus 80 ma-~~pEvd~Av~eIvneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eeF~~Il~ll-~F~~~~~~~fR~WYVDgRi~fH 157 (521) T protein:vir:10 80 LS-KYHEVDNAIDEIINDAIVQEDNRDTVYLDLDKTDWNESVKEMVREEFRTILKLL-KFEREGKRHFRRWYVDSRIYFH 157 (521) T ss_pred Hh-hccchhhHHHhhhcceEEecCCCceEEEEecCcccchHHHHHHHHHHHHHHHHh-ccchhhhHHHhhheeeeeEEEE Confidence 86 59999999999987665332 1222211 11122223333333333222 23333333221 1112322333 Q ss_pred EEEeecCCeeEEeeeeeecCceeEeccc--------------CCceEEecc----------CCCCceeecCCCeEEEeec Q lcl|Aclame:pro 139 LEWALQGREWMPLAFHHRPQSWFQLNPE--------------DQNELRLRD----------NSPAGEALQPFGWIIHRPR 194 (526) Q Consensus 139 i~w~~~~g~~~~~~l~~r~~~~f~~~~~--------------~~~~l~~~~----------~~~~g~~lp~~k~i~~~~~ 194 (526) ++-+..+..-.+.++...+|+.+++... ....+++.. ....+..+|. .-|+|.|. T Consensus 158 kiid~~~pk~GI~Elr~lDPr~i~~vr~i~k~~~~~~~v~~~~~e~f~Y~~~~~~~~~~~g~~~~~vkI~~-daI~y~hS 236 (521) T protein:vir:10 158 KMIDPARPKDGIKELRLLDPRNVEYYRVNLKSNENGNDVYKGVKEFFTYGATEDNRYNISGNSNNLVQIPI-DAIVYSHS 236 (521) T ss_pred EEeeCCCccccceeeeeeCCcceeeeeeecCCCCCcchhhccceeeeeeccCCCceecCCCCCCcceeech-hheeeecc Confidence 3333233222334455555555433221 011222221 1122344555 67888884 Q ss_pred C--CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCc-eEEEecCCCCCHHHHH--HHHHHHHHhhc------CeE Q lcl|Aclame:pro 195 A--RSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLP-IRLGKYPPGTADEEKA--TLLRAVTGLGH------AAA 263 (526) Q Consensus 195 ~--~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P-~~vgk~~~~~~~~e~~--~l~~al~~~~~------~~~ 263 (526) . ..+.++..|.|+.+..++-=-+...-..+.|- .-=.| =||.=.+-|.-+..|. -|.+.+....+ .++ T Consensus 237 GL~d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYR-itRAPeRRvFYIDvGnlpk~KAeqYl~~iM~k~kNklVYDa~TG 315 (521) T protein:vir:10 237 GKVDIDGKTIVGYLHNVIKPANQLKMLEDAMVIYR-ITRAPERRVFYIDVGTMPNKKATQHLNNVMQGLKNRVVYDSSTG 315 (521) T ss_pred cceeCCCCceeccchhhhHhHHhhHHHHhhHHHHh-hhccccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCc Confidence 3 34578899999999999875555444443332 22233 2222223332222221 12222222221 111 Q ss_pred E--------------Eec-----CCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHH- Q lcl|Aclame:pro 264 G--------------IIP-----ETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVH- 323 (526) Q Consensus 264 ~--------------iip-----~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh- 323 (526) - -+| .|++|..+.++++-+.. .=++|..+.+-+++-.+.--.+...++..-...+++. T Consensus 316 ev~ddrk~msMlEDyWLpRReGgrgTEI~TLpggqnlgem--~DV~YF~kkLy~aLnVP~sRl~~e~~~f~~Gr~~EItR 393 (521) T protein:vir:10 316 KVKNSSNNLAMTEDYWLMRRDGKATTEVSTLPGAQSMGEM--DDVRWFNRKLYESMKIPLSRLPQEGAGVTFGAGNDITR 393 (521) T ss_pred eeccchhhhhhHhhhcccccCCCCccceeeccccCCcChH--HHHHHHHHHHHHHhCCCccccCCCCCceecccccchhH Confidence 1 122 46899999876554442 3389999999999877654333221111111122333 Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-cccceeEEecCccc------cCHHHHHHHHH---HHHh--- Q lcl|Aclame:pro 324 NEV-RHDLLASDARQLAATLSRDLLWPLLVLNRPGSPD-VRRAPRLVFDLREQ------ADITSMAQSIP---ALVN--- 389 (526) Q Consensus 324 ~~v-~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~-~~~~p~~~~~~~e~------edl~~~a~~~~---~l~~--- 389 (526) .++ |...+..-...++..|..-|-..|+-=|--.... ....+.+.|+...+ .+.+.+.+++. .+-+ T Consensus 394 DEikF~KFI~rLR~rFs~~f~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~eil~~R~~~l~~~dp~~y 473 (521) T protein:vir:10 394 DELQFTKYIRGLQQQFEPIFLNPLRTNLMLKGKMSVSEWEEQAENIKVVFSKDSYYEEIKDVEILERRVNLVQTLASAEV 473 (521) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHhhcCccc Confidence 333 4455555555555555543333333222111000 01112333333222 22233334444 4433 Q ss_pred CCCcCCHHHHHHH-hCCCCCCccch--hcccCCC---ccccccccccc Q lcl|Aclame:pro 390 VGLEIPSAWVYDK-LGIPQPAKNEP--VLRSAAQ---PAILSRQHGQR 431 (526) Q Consensus 390 ~G~~v~~~~~~e~-~Glp~~~~~e~--~~~~~~~---~~~~~~~~~~~ 431 (526) .|--++.+|+++. |.+++.+-.+. ....... -..+.+....- T Consensus 474 vGky~s~dyi~k~ILr~tDeeik~~~k~I~~E~~~~~~~~p~~e~~df 521 (521) T protein:vir:10 474 TGKYLSHEYVMKNILRMSDEDIKTEREKIDGELKDSVYKNPEDPMEEF 521 (521) T ss_pred cccccchHHHHHHHhcCCHhHHHHHHHHHHHhhhCCCCCCCcchhhcC Confidence 3545889999776 56653221111 1110000 00111110000 No 221 >protein:vir:104500 Length: 537 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214665;genbank:gi:61806306;genbank:GeneID:3294555 Probab=66.51 E-value=0.27 Score=23.73 Aligned_cols=430 Identities=10% Similarity=0.051 Sum_probs=167.9 Q ss_pred CCeeecCCCCccCccccchhhhh-----hh-hhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTS-----RL-AGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHL 74 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v 74 (526) |++ .-.|=-|+.......... .. +...-....+..... .+ +..--+-..+..-|+.|. .++.| T Consensus 1 ~~~--~lfg~~i~~~~~~~~~~s~~~~~~~dg~~~~~~~~~~g~~~------~~--e~~~~~~~eLI~~YR~ma-~~pEv 69 (537) T protein:vir:10 1 MAQ--QLFGFSLQRAKKVPKGPSFVQKDSLDGSQPIVGGGYFGYSV------DF--DGTIRNDHELITRYREMV-LNPEC 69 (537) T ss_pred Ccc--ccccceeecccccccCCcccCCCcccccceeeccccccccc------cc--ccccchHHHHHHHHHHHh-hccch Confidence 665 334544433222111000 00 000000011111001 11 001112345667777887 49999 Q ss_pred HHHHHHHHHHHhcCCceEec---CCCCCHHHHH----HHHHHHHHHhcCcCHHHHHHHHHH-hhhhcceeeeEEEeecCC Q lcl|Aclame:pro 75 FAEMSKRKRAILGLDWAVEP---PRNASAAEKA----DADYLHELLLDLEGLEDLLLDALD-GIGHGYSCIELEWALQGR 146 (526) Q Consensus 75 ~s~l~~Rk~av~~~~w~v~~---~~~~~~~~~~----~a~~v~~~l~~~~~~~~~i~~~ld-a~~~G~s~~Ei~w~~~~g 146 (526) -++++-....+.-.+-.-.| .=+.....+. +.+..+.+++-+ +|+.-..++.. -.-.|--++.++-+..+. T Consensus 70 d~Av~eIVneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll-~F~~~~~e~fR~WYVDgRi~fhKiid~k~p 148 (537) T protein:vir:10 70 DSAVDDVVNETICGNFDDVPISIDLHNLKQSEKIKKLIRSEFDEILRLL-DFDNRAYEIFRRWYVDGRLFFHKVIDPKKP 148 (537) T ss_pred hhHHHHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHh-ccchhhhHHHhhheeeeEEEEEEEEeCCCc Confidence 99999998766533221111 0011112233 333333333222 23333332221 111232233333322222 Q ss_pred eeEEeeeeeecCceeEeccc----C--Cc---------------eEEecc-----CCCCceeecCCCeEEEeec--CCCC Q lcl|Aclame:pro 147 EWMPLAFHHRPQSWFQLNPE----D--QN---------------ELRLRD-----NSPAGEALQPFGWIIHRPR--ARSG 198 (526) Q Consensus 147 ~~~~~~l~~r~~~~f~~~~~----~--~~---------------~l~~~~-----~~~~g~~lp~~k~i~~~~~--~~~g 198 (526) .-.+.++...+|+.+++-+. . .. .+.+.. ++..++.+|. .-|+|.|. -..+ T Consensus 149 k~GI~ELr~lDPr~i~~vR~i~~~~~~~~~~~~~~~~v~~~~~eyf~ynp~g~~~~~~~~vkI~~-dAI~y~hSGl~d~n 227 (537) T protein:vir:10 149 RQGLVELRYVDPRKIRKVTEYEAKRPEALRTQDLNQQLTQQSASYFLYNPKGLKNSTNQGMKIAP-DSIAYCHSGIQDLN 227 (537) T ss_pred cccceeeeeeCCccceeeEeecccCCccceEEecceeeeecccceeeeccccccccCCCceeccH-hheeeecccceeCC Confidence 22233444455544422211 0 00 011111 1334455666 67888873 4456 Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCc-eEEEecCCCCCHHHHH--HHHHHHHHhhcC------eEE----- Q lcl|Aclame:pro 199 YVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLP-IRLGKYPPGTADEEKA--TLLRAVTGLGHA------AAG----- 264 (526) Q Consensus 199 ~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P-~~vgk~~~~~~~~e~~--~l~~al~~~~~~------~~~----- 264 (526) +.+..|.|+.+..++-=-+...-..+.|- .-=.| =||.=.+-|.-+..|. -|.+.+....+. ++- T Consensus 228 ~~~i~syLhkAiKp~NQLkm~EDAlVIYR-itRAPeRRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev~ddr 306 (537) T protein:vir:10 228 KNMVLSHLHKAIKAVNQLRMIEDSLVIYR-LSRAPERRIFYIDVGNLPKNKAEQYLREVMGRYRNKLVYDANTGEIKDDK 306 (537) T ss_pred CCeeeeeehhhhHHHHhhHHHHhhHHHHh-hhccccceEEEEecCCCCchhHHHHHHHHHHhccceEEEeccCceecccc Confidence 77889999999999875555444443332 22233 2232223333222221 122222222211 111 Q ss_pred ---------Eec-----CCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhh-hhhHH-HHHH-H Q lcl|Aclame:pro 265 ---------IIP-----ETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAF-ALGQV-HNEV-R 327 (526) Q Consensus 265 ---------iip-----~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~-a~~~v-h~~v-~ 327 (526) -+| .|++|..+.++++-+.. .=++|..+.+-+++-.+.--.+. ++ +.+. ..+++ ..++ | T Consensus 307 k~msMlEDyWLPRReGgrgTEItTLpGgqnlgem--~DV~YF~kKLy~aLnVP~SRl~~-e~-~f~~Gr~~EItRDEiKF 382 (537) T protein:vir:10 307 KFMSMLEDFWLPRREGGRGTEISTLPGGQNLGEL--EDVKYFQKKLYKALNVPSSRLET-ET-TFNIGRAAEITRDEVKF 382 (537) T ss_pred hhhhhhhhhcccccCCCcccceeeccccCCcChH--HHHHHHHHHHHHHhCCCccccCC-CC-cccccccchhhHHHHHH Confidence 122 46899999876554442 34899999999998777533332 22 2221 11222 3333 4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-cccceeEEecCccc------cCHHHHHHHHHHHHhC----CCcCCH Q lcl|Aclame:pro 328 HDLLASDARQLAATLSRDLLWPLLVLNRPGSPD-VRRAPRLVFDLREQ------ADITSMAQSIPALVNV----GLEIPS 396 (526) Q Consensus 328 ~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~-~~~~p~~~~~~~e~------edl~~~a~~~~~l~~~----G~~v~~ 396 (526) ...+..-...++..|..-|-..|+-=|--.... ......+.|+...+ .+.+.+.+++..|..+ |--++. T Consensus 383 ~KFI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~s~ 462 (537) T protein:vir:10 383 QKFIARLRKRFSELFVDLLKTQLILKGICSIEEWEEMKEHIQFDFIADNYFTELKEIEIRNERMNEVAQMDPYVGKYFSA 462 (537) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhhcccch Confidence 455555555566555543333333222111000 01112333333322 2333344444444432 444788 Q ss_pred HHHHHHh-CCCC---------------------CCccchhcccCCCcc-cccccccccccccccccccccccccch Q lcl|Aclame:pro 397 AWVYDKL-GIPQ---------------------PAKNEPVLRSAAQPA-ILSRQHGQRVAALATIVGPRYGDQQAL 449 (526) Q Consensus 397 ~~~~e~~-Glp~---------------------~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (526) +|+++++ .+.+ |.+.+......+..+ .++..........++. ++..+..-.+ T Consensus 463 dyi~k~ILr~tDeeI~~~~k~I~~E~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 537 (537) T protein:vir:10 463 NYIRTKVLKQTESEIKEIDKEIKQEIADGVIMDPQAMQAMEMGIGDEEPVPEGGEEPQTDPNSAV-SPADQKRGEL 537 (537) T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHhhCCCCCCcccccccccCCCCcccCCCCCCCcccCCccCC-CCCCccCCCC Confidence 8887663 3321 211111110000000 0000000000000000 0111111111 No 222 >protein:vir:95315 Length: 559 # NCBI annotation: putative head-to-tail-joining protein # Family: family:all:481 # MgeID: mge:1564 # MgeName: phiV10 # Cross-refs: genbank:acc:YP_512261;genbank:gi:89152428;genbank:GeneID:3952984 Probab=64.83 E-value=0.29 Score=23.50 Aligned_cols=443 Identities=12% Similarity=0.056 Sum_probs=149.3 Q ss_pred CCeeec---CCC--------CccCccccc--hhhhhhh-hhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHH---- Q lcl|Aclame:pro 1 MAQIVD---VYG--------NPIRTQQLR--EPQTSRL-AGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAE---- 62 (526) Q Consensus 1 m~~~~~---~~g--------~p~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~---- 62 (526) +|+.-. ... ++++....+ ...++.+ .++....+. ...|.+..- ...+......+.+ T Consensus 35 lP~~~~~~~~~~~~~~~~~~~~~dst~~~a~~~Las~l~~~ltpp~~~--WF~l~~~d~----~~~e~~~v~~~L~~ve~ 108 (559) T protein:vir:95 35 NPRGSRFLTSEVNRNDRRNTRIIDSTGTMAARTLASGMMSGITSPARP--WFRLATPDP----EMMDYGPVKLWLEAVQN 108 (559) T ss_pred ccccCCcCCCCCCcccccccccccchHHHHHHHHHHHHHHhhcCCCCc--ccccccCCc----cccchHHHHHHHHHHHH Confidence 332211 111 112111110 0000100 111111111 111111100 0000001111111 Q ss_pred -HHHHHHhccHHHHHHHHHHHHH-HhcC-CceEec--------------------CCCCCHHH-----H-HHHHHHHHHH Q lcl|Aclame:pro 63 -LFMDMEERDAHLFAEMSKRKRA-ILGL-DWAVEP--------------------PRNASAAE-----K-ADADYLHELL 113 (526) Q Consensus 63 -l~~~m~~~D~~v~s~l~~Rk~a-v~~~-~w~v~~--------------------~~~~~~~~-----~-~~a~~v~~~l 113 (526) +++.+. +-.-....-+.-+.. +.+. -+.+.+ ......+. + ...+.+++ + T Consensus 109 ~~~~~l~-~snf~~~~~~~~~~L~~~Gta~l~~~~d~~~~~r~~~~~l~~~~v~~d~~G~vd~i~r~~~~t~~ql~~~-f 186 (559) T protein:vir:95 109 RMNDMFN-KSNLYQSLPQLYGSLGTYSTGAMAVLDDDEDIIRTMPFPIGSYYLANSPRGSVDTCFRKFSMTVRQLVQE-F 186 (559) T ss_pred HHHHHHH-hcCcHHHHHHHHHHHHhhCceeeEeecCCCceeEEEEeecCeEEEeeCCCCCeEEEEEeEecCHHHHHHH-c Confidence 111111 111111112222222 2221 111211 11110000 0 01111111 1 Q ss_pred hcCcCHHHHHHHHHHhhhh--cceeeeEEEeecCCeeEEeeeee--ecCceeEecccCCceEEeccCCCCceeecCCCeE Q lcl|Aclame:pro 114 LDLEGLEDLLLDALDGIGH--GYSCIELEWALQGREWMPLAFHH--RPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWI 189 (526) Q Consensus 114 ~~~~~~~~~i~~~lda~~~--G~s~~Ei~w~~~~g~~~~~~l~~--r~~~~f~~~~~~~~~l~~~~~~~~g~~lp~~k~i 189 (526) ..+.+.+-++..++.-.+ =|.+++.||-+.++. +.++.. +|-..+.+.........+++.+ +..+-|+ T Consensus 187 -g~~~l~~~~~~~~~~~~~~~~v~v~~~V~pr~~~~--~~~~~~~~~pf~s~~~e~~~~~~~~l~esg-----~~e~P~~ 258 (559) T protein:vir:95 187 -GLNNVSESVKSMWESGTYEKWIEVMHSVYPNIDRD--TSKLDSKNKPFKSVYYEVGGDNDKLLRESG-----FDEFPIM 258 (559) T ss_pred -CcccCCHHHHHHHhcCCCCCeEEEEEEEecccccc--ccccccccceEEEEEEEecCCCceeeecCC-----cccCCcc Confidence 111234444444432221 145555555333221 111111 1112222332222222223322 3456689 Q ss_pred EEeecCCCCccccch-hHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHhhcCeEEEecC Q lcl|Aclame:pro 190 IHRPRARSGYVARSG-LFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGHAAAGIIPE 268 (526) Q Consensus 190 ~~~~~~~~g~p~g~g-Ll~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~~~~~iip~ 268 (526) +.|+...+|..||.| ....+..-..--+...+.-+..+++---|..++ |+...... .++..++..+++. T Consensus 259 ~~Rw~~~~ge~YGrg~P~~~al~d~k~L~~l~~~~l~~~~~~~~pp~~v--~~~~~~~~--------~~l~pgg~~~~~~ 328 (559) T protein:vir:95 259 APRWEVNGEDVYGSSCPGMLALGPVKALQLLQKRKSQLIDKATNPPMVA--PTSLKNQR--------ASLLPGDITYIDQ 328 (559) T ss_pred ceeeeecCCccccccchHHHhhHHHHHHHHHHHHHHHHHHHHhcCceec--cccccccc--------eeeeccceeeeCC Confidence 999999999999999 598888888888888888899999987775443 32221100 1233444444443 Q ss_pred C---ceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHH--HHHHHHHHHHHHHH Q lcl|Aclame:pro 269 T---MAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHD--LLASDARQLAATLS 343 (526) Q Consensus 269 ~---~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~--~~~ad~~~i~~~ln 343 (526) + ..|+.+...+.+...-...|+.+...|..++.+.-+.+- ...+++.--..||+....+. .+-.....+...+- T Consensus 329 ~~~~~~i~p~~~~~~~~~~~~~~i~~~~~rI~~af~~d~~~~l-~~r~~~rvTAtEV~~r~~E~~~~LG~v~~rl~~E~l 407 (559) T protein:vir:95 329 ITGQDGFRPAYLVNPSTADLVADIQDTRQIINSAYFVDLFMML-QNINTRSMPVEAVIEMKEEKLLMLGPVLERLNDECL 407 (559) T ss_pred CCCcccceeecccccchHHHHHHHHHHHHHHHHHhhhhhHHHh-hcCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH Confidence 3 234444322322332345578899999999987432221 11112222344555443222 22222222222221 Q ss_pred HHHH----HHHHHhc-CCCCCCcccceeEEecCccccC----------HHHHHHHHHHHHhCCC----cCCH----HHHH Q lcl|Aclame:pro 344 RDLL----WPLLVLN-RPGSPDVRRAPRLVFDLREQAD----------ITSMAQSIPALVNVGL----EIPS----AWVY 400 (526) Q Consensus 344 ~~li----~~l~~~N-f~~~~~~~~~p~~~~~~~e~ed----------l~~~a~~~~~l~~~G~----~v~~----~~~~ 400 (526) .-+| ..|..-| +|+.+..-.-+.+.+....+-. +..+++.+..+.+++= .++. .++. T Consensus 408 ~Pli~r~~~il~r~g~lP~~p~~l~~~~i~v~~is~La~aqk~~~~~~i~~~~~~~~~laq~~Pevld~id~d~~~~~~a 487 (559) T protein:vir:95 408 NPLIDRSFSMMVRKNMLPPPPDVMEGMPLKVEYISVMAQAQKSIGLSSLASTVNFIGQLAQVKPEALDKLNVDQAIDAFA 487 (559) T ss_pred HHHHHHHHHHHHhcCCCCCCcccccCcceEEEeecHHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCHHHHHHHHH Confidence 1122 2222222 2221111011233333322211 1122233333333321 1333 4566 Q ss_pred HHhCCCCCCccchhcccCCCcccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 401 DKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALADLPAKDMQNQANDLLAPLLEAVNRGD 480 (526) Q Consensus 401 e~~Glp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~ 480 (526) +.+|+|.. ++.+....+...+.. ..+ .+ ..-+.+...-..++...+..++ T Consensus 488 ~~~Gvp~~-----~irs~~ev~~~rqqr---------------------~~~--qq--~~q~~~~~~~aa~~~~~~~~~~ 537 (559) T protein:vir:95 488 DMSGVSPT-----VIVPQEQVEQARQQR---------------------AQQ--QQ--QQQMMAMGMAAAQGVKTLSEAK 537 (559) T ss_pred HHhCCchh-----hcCCHHHHHHHHHHH---------------------HHH--HH--HHHHHHHHHHHHHhhhcccccc Confidence 67788631 111110000000000 000 00 0000000000112222222222 Q ss_pred --CHHHHHHHHHHHhhcCCHHH Q lcl|Aclame:pro 481 --SETELLGALAEAFPDMDDSA 500 (526) Q Consensus 481 --s~ee~~~~L~~l~~~l~~~~ 500 (526) .++.+.+.+...-+.-...+ T Consensus 538 ~~~~~~l~~~~~~~~~~~~~~~ 559 (559) T protein:vir:95 538 TSDPSVLSAMANAVSGQGGQSQ 559 (559) T ss_pred CCChhHHHHHHHhhcCccccCC Confidence 22333333322222222221 No 223 >protein:vir:1538 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052106;swissprot:trembl:q9t110;genbank:gi:9634032;uniprot:Q9T110;genbank:GeneID:1262384 Probab=62.17 E-value=0.34 Score=23.15 Aligned_cols=410 Identities=15% Similarity=0.090 Sum_probs=148.0 Q ss_pred CCeeecCCCCccC-----ccccchhhhhhhhhhhhhh-----------------------------------hhhhhccc Q lcl|Aclame:pro 1 MAQIVDVYGNPIR-----TQQLREPQTSRLAGLAKEF-----------------------------------AQHPAKGL 40 (526) Q Consensus 1 m~~~~~~~g~p~~-----~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~l 40 (526) |+. ..+.|-.=+ .+.++... ...-...+++ ......+| T Consensus 1 m~~-~~~~~~~~~~~k~r~~~l~~~R-~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~dst~~~a~~~Laa~l~~~l 78 (535) T protein:vir:15 1 MAD-SKRTGLGEDGAKATYDRLTNDR-RAYETRAENCAQYTIPSLFPKESDNESTDYTTPWQAVGARGLNNLASKLMLAL 78 (535) T ss_pred CCc-cchhccchHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcccccCCCCCcccccccccccccHHHHHHHHHHHHHHhh Confidence 332 112222211 01111110 0011111111 12222233 Q ss_pred CHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHH Q lcl|Aclame:pro 41 TPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLE 120 (526) Q Consensus 41 ~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~ 120 (526) ||.+ .+++-.-. + ..+.++..+..+ -+.|...|+. +.+.+...|... +|. T Consensus 79 tP~~--~WF~l~~~-d-~~~~~~~~~~~~-~~~v~~~L~~------------------------ve~~~~~~l~~s-nf~ 128 (535) T protein:vir:15 79 FPMQ--SWMKLTIS-E-YEAKQLVGDPDG-LAKVDEGLSM------------------------VERIIMNYIESN-SYR 128 (535) T ss_pred cCCC--cccccccC-h-HHHhccCCCcch-HHHHHHHHHH------------------------HHHHHHHHHHhc-CcH Confidence 3321 12221100 0 000000000000 0001111111 111111222221 344 Q ss_pred HHHHHHH-Hhhhhcceeee------------------EEEeecC-CeeE--Eeeeee--------------------ecC Q lcl|Aclame:pro 121 DLLLDAL-DGIGHGYSCIE------------------LEWALQG-REWM--PLAFHH--------------------RPQ 158 (526) Q Consensus 121 ~~i~~~l-da~~~G~s~~E------------------i~w~~~~-g~~~--~~~l~~--------------------r~~ 158 (526) ..+..++ +-+.+|.++.= +++..++ |.+. ..+... .+. T Consensus 129 ~~~~~~~~~L~~~G~a~l~~~~~~~~~~~f~~~pl~~~~v~~d~~G~vd~i~r~~~~t~~~l~~~~~~~~~~~~~~~~~~ 208 (535) T protein:vir:15 129 VTLFECLKQLIVAGNALLYLPEPEGSYNPMKLYRLSSYVVQRDAYGNVLQIVTRDQIAFGALPEDVRSAVEKAGGEKKMD 208 (535) T ss_pred HHHHHHHHHHHhhCceeEEeecCCCCceeeEEEEcCeeEEeeCCCCCeeEEEEeEeecHHHHHHHHhHhhhccccccCCC Confidence 4444333 33345554333 3333221 1100 000000 000 Q ss_pred cee------EecccCCceEEeccC-CC------CceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 159 SWF------QLNPEDQNELRLRDN-SP------AGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAE 225 (526) Q Consensus 159 ~~f------~~~~~~~~~l~~~~~-~~------~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~ 225 (526) .++ ..+.++.....+.+. +. .+-++..+-|++.|+...+|+.||.|....++.-..--+...+.-+. T Consensus 209 ~~v~v~~~v~~~~~~~~~~~~~e~~g~~~~~~~~~~~~~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~ 288 (535) T protein:vir:15 209 EMVDVYTHVYLDEESGDYLKYEEVEDVEIDGSDATYPTDAMPYIPVRMVRIDGESYGRSYCEEYLGDLRSLENLQEAIVK 288 (535) T ss_pred CceeEEEEEEEecCCCcEEEEEEeeCccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHH Confidence 000 011111111111100 00 01123345689999999999999999999999999999999999999 Q ss_pred HHHHcCCceEEEecCCCCCHHHHHHHHHHHHHhhcCeEEEecCCceEEEeecC-CCChHHHHHHHHHHHHHHHHHHhchh Q lcl|Aclame:pro 226 MLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGHAAAGIIPETMAIDFQQAA-QGSSEPFLAMMRQSEDAISKAVLGGT 304 (526) Q Consensus 226 f~E~~G~P~~vgk~~~~~~~~e~~~l~~al~~~~~~~~~iip~~~~ie~~~a~-~~~~~~~~~li~~~d~~Isk~ilGqt 304 (526) .+++---|+-+..- .+... ...+.. +..++++-....++..+... .+.-..-...|+.+...|+.+++... T Consensus 289 ~~~~~~~p~~lv~~-~g~~~--~~~l~~-----~~~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~~I~~af~~~~ 360 (535) T protein:vir:15 289 MSMISAKVIGLVNP-AGITQ--PRRLTK-----AQTGDFVPGRREDIDFLQLEKQADFTVAKAVSDQIEARLSYAFMLNS 360 (535) T ss_pred HHHHHhcCceeecc-ccccc--chhccc-----CCceeeecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhhhh Confidence 99998877644321 12211 111111 12223333334456666543 34445567789999999999987765 Q ss_pred hhcccccccchhhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh--------cCCCCCCcccceeEEecCc-- Q lcl|Aclame:pro 305 LTSTTSQSGGGAFALGQVHNEVRH--DLLASDARQLAATLSRDLLWPLLVL--------NRPGSPDVRRAPRLVFDLR-- 372 (526) Q Consensus 305 ltt~~~~~~~gS~a~~~vh~~v~~--~~~~ad~~~i~~~ln~~li~~l~~~--------Nf~~~~~~~~~p~~~~~~~-- 372 (526) ++.-.+ +..-..||+....+ ..+-.-... |+..++-||+.. |--+.. +...-+++|... T Consensus 361 ~~~~~~----~r~TAtEV~~r~~E~~~~LG~v~~r----l~~Ell~Pli~r~~~il~r~g~lP~~-p~~~v~~~yis~La 431 (535) T protein:vir:15 361 AVQRTG----ERVTAEEIRYVASELEDTLGGVYSI----LSQELQLPLVRVLLKQLQATSQIPEL-PKEAVEPTISTGLE 431 (535) T ss_pred cccCCC----ccccHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHhcCCCCCC-CccceeEEEecHHH Confidence 442211 21223455543322 222222222 333344444433 111111 122223333221 Q ss_pred ---cccCHHHHHHHHHHHHhCCC-----cCCH----HHHHHHhCCCCC---CccchhcccCCCccccccccccccccccc Q lcl|Aclame:pro 373 ---EQADITSMAQSIPALVNVGL-----EIPS----AWVYDKLGIPQP---AKNEPVLRSAAQPAILSRQHGQRVAALAT 437 (526) Q Consensus 373 ---e~edl~~~a~~~~~l~~~G~-----~v~~----~~~~e~~Glp~~---~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (526) ...++..+...++.+..++= .|+. .++.+.+|+|.. ...|++... T Consensus 432 ~aqr~~~~~~l~~~~~~la~~~P~~ld~~id~d~~~~~~a~~~Gvp~~~i~~~~eev~~~-------------------- 491 (535) T protein:vir:15 432 AIGRGQDLDKLERCISAWAALAPMQGDPDINLAVIKLRIANAIGIDTSGILLTDEQKQAL-------------------- 491 (535) T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhhccCCHHHHHHHHHHHcCCChhhhcCCHHHHHHH-------------------- Confidence 11223333333333433321 1222 355555676532 111111100 Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHhhcCCHH Q lcl|Aclame:pro 438 IVGPRYGDQQALDKALADLPAKDMQNQANDLLAPLLEAVN--RGDSETELLGALAEAFPDMDDS 499 (526) Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~a~s~ee~~~~L~~l~~~l~~~ 499 (526) ..... .+.+......++-..+. ...++|.+.+.. .. ..++.. T Consensus 492 ---------------~~q~~---~~~~~~~~a~~~g~~~~~~~~~~p~~~~~~~-~~-~g~~~~ 535 (535) T protein:vir:15 492 ---------------MMQDA---AQTGIENAAATGGAGVGALATSSPEAMQGAA-AQ-AGLDAT 535 (535) T ss_pred ---------------HHHHH---HHHHHHHHHHHHHhhccchhccChHHHHHHH-hc-cCCCCC Confidence 00000 00000011111111111 123455444322 22 123333 No 224 >protein:vir:3361 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523332;genbank:gi:17570823;genbank:GeneID:927409 Probab=59.29 E-value=0.4 Score=22.79 Aligned_cols=430 Identities=14% Similarity=0.091 Sum_probs=147.4 Q ss_pred CCeeecCCCCccCc-----cccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHH-HHHHHHHHHhccHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRT-----QQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQA-QAELFMDMEERDAHL 74 (526) Q Consensus 1 m~~~~~~~g~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~-~~~l~~~m~~~D~~v 74 (526) |+.- .+.|..-+. +.++... ...-...+++..|-...+-+.. .......... +....-+.. + .+ T Consensus 1 m~~~-~~~~~~~~~~~~r~~~l~~~R-~~~e~~w~e~~~~~lP~~~~~~-----~~~~~~~~~~~~dst~~~a~--~-~L 70 (535) T protein:vir:33 1 MADS-KRTGLGEDGAKATYDRLTNDR-RAYETRAENCAQYTIPSLFPKE-----SDNESTDYTTPWQAVGARGL--N-NL 70 (535) T ss_pred CChh-hhhccChhHHHHHHHHHHHHh-hHHHHHHHHHHHHhcccccCCC-----CCcccccccccccccHHHHH--H-HH Confidence 4432 222222111 1111110 0111111222221100000000 0000000000 000000000 0 11 Q ss_pred HHHHHHHHHHHhcCCc-eEecCCC-------CCHHHHHHH-------HHHHHHHhcCcCHHHHHHHHH-Hhhhhcceeee Q lcl|Aclame:pro 75 FAEMSKRKRAILGLDW-AVEPPRN-------ASAAEKADA-------DYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIE 138 (526) Q Consensus 75 ~s~l~~Rk~av~~~~w-~v~~~~~-------~~~~~~~~a-------~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~E 138 (526) +|-|..=-.+- + +| .+.+.+. ...+...+. +.+...|.. .+|...+..++ +-+.+|.++.= T Consensus 71 aa~l~~~ltP~-~-~WF~l~~~d~~~~~~~~~~~~~~~v~~~l~~ve~~~~~~~~~-snf~~~~~~~~~~L~~~G~a~l~ 147 (535) T protein:vir:33 71 ASKLMLALFPM-Q-SWMKLTISEYEAKQLVGDPDGLAKVDEGLSMVERIIMNYIES-NSYRVTLFECLKQLIVAGNALLY 147 (535) T ss_pred HHHHHHhhcCC-C-cccccccChHHHhccccCcchHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhhCceeEE Confidence 11111100011 1 22 1111100 000000111 111222222 23444444333 33345554433 Q ss_pred E------------------EEeecC-CeeE--Eeeeeee--------------------cCc---e---eEecccCCceE Q lcl|Aclame:pro 139 L------------------EWALQG-REWM--PLAFHHR--------------------PQS---W---FQLNPEDQNEL 171 (526) Q Consensus 139 i------------------~w~~~~-g~~~--~~~l~~r--------------------~~~---~---f~~~~~~~~~l 171 (526) + ++..+. |.+. ..++... +.. . +..+.++.... T Consensus 148 ~~~~~~~~~~f~~~pl~~~~v~~d~~G~vd~i~r~~~~t~~ql~~~~~~~~~~~~~~k~~~~~~~v~~~v~~~~~~~~~~ 227 (535) T protein:vir:33 148 LPEPEGSYNPMKLYRLSSYVVQRDAYGNVLQIVTRDQIAFGALPEDVRSAVEKSGGEKKMDEMVDVYTHVYLDEESGDYL 227 (535) T ss_pred eecCCCCceeeEEEEcCeeEEeeCCCCCeeEEEeeEeecHHHHHHHhhhhhcccccccccccCCeEEEEEEeeCCCCcEE Confidence 3 222221 1110 0000000 000 0 00111111111 Q ss_pred Eecc-CC------CCceeecCCCeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCC Q lcl|Aclame:pro 172 RLRD-NS------PAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTA 244 (526) Q Consensus 172 ~~~~-~~------~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~~~ 244 (526) .+.. .+ ..+-++..+-|++.|+...+|+.||.|....++.-..--+...+.-+..+++---|+-+..- .+.. T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~lv~~-~g~~ 306 (535) T protein:vir:33 228 KYEEVEDVEIDGSDATYPTDAMPYIPVRMVRIDGESYGRSYCEEYLGDLRSLENLQEAIVKMSMISAKVIGLVNP-AGIT 306 (535) T ss_pred EEEEEeCccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeecc-cccc Confidence 1110 00 00112334568999999999999999999999999999999999999999998877644321 1221 Q ss_pred HHHHHHHHHHHHHhhcCeEEEecCCceEEEeecC-CCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHH Q lcl|Aclame:pro 245 DEEKATLLRAVTGLGHAAAGIIPETMAIDFQQAA-QGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVH 323 (526) Q Consensus 245 ~~e~~~l~~al~~~~~~~~~iip~~~~ie~~~a~-~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh 323 (526) . ...+.. +..+.++-....++..+... .+.-..-...|+.+...|+.+++...++...+ +.--..||+ T Consensus 307 ~--~~~~~~-----~~~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~~I~~af~~~~~~~~~~----~r~TAtEV~ 375 (535) T protein:vir:33 307 Q--PRRLTK-----AQTGDFVPGRREDIDFLQLEKQADFTVAKAVSDQIEARLSYAFMLNSAVQRTG----ERVTAEEIR 375 (535) T ss_pred c--hhhccc-----CCceeeecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhhhhcccCCC----ccccHHHHH Confidence 1 111111 12223333334456666543 34445567889999999999987765442211 212234555 Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh--------cCCCCCCcccceeEEecCc-----cccCHHHHHHHHHHHH Q lcl|Aclame:pro 324 NEVRH--DLLASDARQLAATLSRDLLWPLLVL--------NRPGSPDVRRAPRLVFDLR-----EQADITSMAQSIPALV 388 (526) Q Consensus 324 ~~v~~--~~~~ad~~~i~~~ln~~li~~l~~~--------Nf~~~~~~~~~p~~~~~~~-----e~edl~~~a~~~~~l~ 388 (526) ....+ ..+-.-... |+..++-||+.. +--+..+ ...-+++|... ...++..+...++.+. T Consensus 376 ~r~~E~~~~LG~v~~r----l~~Ell~Pli~r~~~il~r~g~lP~~p-~~~v~~~yis~La~aqr~~~~~~l~~~~~~la 450 (535) T protein:vir:33 376 YVASELEDTLGGVYSI----LSQELQLPLVRVLLKQLQATSQIPELP-KEAVEPTISTGLEAIGRGQDLDKLERCISAWA 450 (535) T ss_pred HHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHhcCCCCCCC-ccceeEEEecHHHHHHHHHHHHHHHHHHHHHH Confidence 43322 222222222 333344444432 1111111 22223333221 1122333333333343 Q ss_pred hCC----C-cCCH----HHHHHHhCCCCC---CccchhcccCCCcccccccccccccccccccccccccccchHHHHHHH Q lcl|Aclame:pro 389 NVG----L-EIPS----AWVYDKLGIPQP---AKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALADL 456 (526) Q Consensus 389 ~~G----~-~v~~----~~~~e~~Glp~~---~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (526) .++ - .|+. .++.+.+|+|.. ...|++... .... T Consensus 451 ~~~P~~~d~~id~d~~~~~~a~~~Gvp~~~i~~~~ee~~~~-----------------------------------~~q~ 495 (535) T protein:vir:33 451 ALAPMQGDPDINLAVIKLRIANAIGIDTSGILLTDEQKQAL-----------------------------------MMQD 495 (535) T ss_pred hhChhhhhccCCHHHHHHHHHHHcCCCHhHhcCCHHHHHHH-----------------------------------HHHH Confidence 332 1 1222 355556677532 111111110 0000 Q ss_pred HHH-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCHH Q lcl|Aclame:pro 457 PAK-DMQNQANDLLAPLLEAVNRGDSETELLGALAEAFPDMDDS 499 (526) Q Consensus 457 ~~~-~~~~~~~~~~~~i~~~~~~a~s~ee~~~~L~~l~~~l~~~ 499 (526) ... ..++++...-..+.... ...++ ....+.... .++.. T Consensus 496 ~~~~~~~~~~~~~g~~~~~~~--~~~~~-~~~~~~~~~-g~~~~ 535 (535) T protein:vir:33 496 AAQTGVENAAAAGGAGVGALA--TSSPE-AMQGAAAKA-GLNAT 535 (535) T ss_pred HHHHHHHHHHHhhhhhhcchh--hcCCh-hHHHHHHhc-cCCCC Confidence 000 00000110000111111 11122 222222222 23333 No 225 >protein:vir:78589 Length: 695 # NCBI annotation: NUDIX hydrolase # Family: family:all:297 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294854;genbank:gi:149882917;genbank:GeneID:5291060 Probab=57.87 E-value=0.42 Score=22.62 Aligned_cols=474 Identities=14% Similarity=0.096 Sum_probs=175.3 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCC--------------CHHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQG--------------NLQAQAELFMD 66 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g--------------~~~~~~~l~~~ 66 (526) |++- -.=+.++..++.+|.. .+ .+.+.+- --..+.||.. +++..-+-+. .+.-|.-| .. T Consensus 46 ~~~~--~~~~~~~~~~~~~~~~-~~-~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~~l-a~ 118 (695) T protein:vir:78 46 MGRR--GALNALDAAPVAEPSP-SL-RLARQFE-VDVSNYTPRE-RRAASYALDFNGTSMDALSFVTSSGFPGFPTL-VL 118 (695) T ss_pred hccc--ccccccccccccCCCc-cc-ccceece-eccccCCccc-cchhhhhhcccccccccchhhhccCcchHHHH-HH Confidence 3320 0001111111111100 00 0001110 0011222221 1111111110 01111111 11 Q ss_pred HHhccHHHHHHHHHHHHHHhcCCceEecC--------------CCCCH-HHHHHHHHHHHHHhcCcCHHHHHHHHHHhhh Q lcl|Aclame:pro 67 MEERDAHLFAEMSKRKRAILGLDWAVEPP--------------RNASA-AEKADADYLHELLLDLEGLEDLLLDALDGIG 131 (526) Q Consensus 67 m~~~D~~v~s~l~~Rk~av~~~~w~v~~~--------------~~~~~-~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~ 131 (526) | .+=+.++++..+.-....+. |.-... ++... .+....+.++..++++--++.+..-+-.+-+ T Consensus 119 l-aQ~~eyr~~~~~ia~e~~R~-w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erL~V~~~l~eaik~aRl 196 (695) T protein:vir:78 119 L-AQLPEYRAMHEVLADECIRT-WGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQA 196 (695) T ss_pred H-hhccchhhHHHHHHHHhhcc-cceeccccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc Confidence 2 24556667777766666554 722111 11101 1112334455556665434555555567999 Q ss_pred hcceeeeEEEeecCC----ee----------EEeeeeeecCceeEecccCC-ceEE-----eccCCCCceeecCCCeEEE Q lcl|Aclame:pro 132 HGYSCIELEWALQGR----EW----------MPLAFHHRPQSWFQLNPEDQ-NELR-----LRDNSPAGEALQPFGWIIH 191 (526) Q Consensus 132 ~G~s~~Ei~w~~~~g----~~----------~~~~l~~r~~~~f~~~~~~~-~~l~-----~~~~~~~g~~lp~~k~i~~ 191 (526) ||-+++=+.=+-++. -+ .++.|...++.|......+. ..+. -..-...|..+...+++.+ T Consensus 197 fGGa~~~i~i~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~G~kIH~SRL~~f 276 (695) T protein:vir:78 197 FGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHTI 276 (695) T ss_pred ccceEEEEEeccCccccccccccccccccCcceeeeEeecccccccchhhhccchhhccCCCceEEEeceEEeeeeEEEe Confidence 998874443322221 11 12235556666655432211 0000 0000011223333333333 Q ss_pred eecC------CCCccccchhHHHHHHHHH---HHHHHHHHHHHHHHHcCCceEEEecC-----CCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 192 RPRA------RSGYVARSGLFRVLAWPYL---FRHYATSDLAEMLEIYGLPIRLGKYP-----PGTADEEKATLLRAVTG 257 (526) Q Consensus 192 ~~~~------~~g~p~g~gLl~~~~~~~~---fK~~~~~~w~~f~E~~G~P~~vgk~~-----~~~~~~e~~~l~~al~~ 257 (526) .... ..-+.+|.++...++..+. -.+......+ .++.+... |.+ .+....+...-.+.+.. T Consensus 277 ~g~plPd~LKp~y~~~GiSv~q~~~e~V~~~~rT~~~v~~Li---~~~~v~~l--k~dla~~L~~g~~~~l~~R~eli~~ 351 (695) T protein:vir:78 277 VSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIV---KQFSVSGI--LMDLAQALMPGANVDLSMRAELINR 351 (695) T ss_pred cCCCchhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHHHH---HhhhhHHH--HHHHHHhhcChhHHHHHHHHHHHHH Confidence 2211 1234578888888774432 2222222222 22221111 111 11122233333455566 Q ss_pred hhcC-eEEEecC-CceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 258 LGHA-AAGIIPE-TMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDA 335 (526) Q Consensus 258 ~~~~-~~~iip~-~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~ 335 (526) +.++ +..++.+ +.+++.++.+=++ ...++...-.+||-+. +-.+|---+..-.|=+|.|+.-..+.-|.+++.. T Consensus 352 ~Rsn~G~~llDk~~Eefeq~stslSG---LddVi~qf~q~VAgaa-~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Q 427 (695) T protein:vir:78 352 YRDNRNILFLDKATEEFFQFNTPLSG---LDALQAQAQEQMSAVS-HIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQ 427 (695) T ss_pred hcCccceEEEecCCcceEEEecccCC---HHHHHHHHHHHHHhhh-cCchhhhhccCCccccccchhhHHHHHHHHHHHH Confidence 6665 4556774 5778877754222 4456666666676653 3333322333344666777877888888888777 Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccC------H-HHHHHHHHHHHhCCCcCCHHHHHHHhCCCCC Q lcl|Aclame:pro 336 RQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQAD------I-TSMAQSIPALVNVGLEIPSAWVYDKLGIPQP 408 (526) Q Consensus 336 ~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~ed------l-~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~ 408 (526) ...-.-.=+.++.-|..--|+.. +++ -.|+|..-.+-+ + ++.|+.++.+++.|+ |+.+++++++.-++. T Consensus 428 e~~L~p~L~rl~~ii~rS~~G~i-dpd--i~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gv-I~~~evr~rL~~d~~ 503 (695) T protein:vir:78 428 RNALQQLMNDVIVMIQLSLFGAV-DPS--IKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQV-IRPDQVAARLNTEPD 503 (695) T ss_pred HHHHHHHHHHHHHHHHHHhcCCC-CCc--ceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcC-CCHHHHHHHHhcCCC Confidence 54433333345544444344432 322 234444323222 2 345677888999988 999999999755322 Q ss_pred CccchhcccCCCccccc-------------cccccccc----ccccccccccccccchHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 409 AKNEPVLRSAAQPAILS-------------RQHGQRVA----ALATIVGPRYGDQQALDKALADLPAKDMQNQANDLLAP 471 (526) Q Consensus 409 ~~~e~~~~~~~~~~~~~-------------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (526) ..--..+...-.|..+. ...+..++ +.++...+ +..-.+.-.... +. T Consensus 504 s~Y~~~~D~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~---~~----------- 567 (695) T protein:vir:78 504 GPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAP--PTVANVNANVKP---RE----------- 567 (695) T ss_pred cccccccccccCCCcCccchhhhhHhhhcCcccccccCCCCCCCCCCCCC--Cceeeeeccccc---cc----------- Confidence 11100000000000000 00000000 00000000 000000000000 00 Q ss_pred HHHHHHhcCCHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhHHhhhhhccC Q lcl|Aclame:pro 472 LLEAVNRGDSET-ELLGALAEAFPDMDDSALTDALHRLLFAADTWGRLHGNLDRID 526 (526) Q Consensus 472 i~~~~~~a~s~e-e~~~~L~~l~~~l~~~~l~~~l~~a~~~A~l~G~~~~~~e~~d 526 (526) ..+.++- ..... .+- -+..-| ++.+. +-.||-=.+.-|.-+ T Consensus 568 -----ag~~~~~~~aag~---v~~-~~g~vL--l~kr~---~g~W~lPgG~vE~gE 609 (695) T protein:vir:78 568 -----AGAQDAAMRAAGA---VYV-VDGKVL--LMKRP---AGDWGLPAGKVEGNE 609 (695) T ss_pred -----cCCCCcccceeEE---EEE-eCCEEE--EEEec---CCCccCCccccCCCC Confidence 0000000 00000 000 000000 01110 122222222223333 No 226 >protein:vir:96783 Length: 488 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1629 # MgeName: phiHSIC # Cross-refs: genbank:acc:YP_224240;genbank:gi:62362375;genbank:GeneID:3345722 Probab=52.63 E-value=0.55 Score=22.01 Aligned_cols=394 Identities=10% Similarity=-0.021 Sum_probs=152.6 Q ss_pred CCeeecCCCC----ccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHH----------------HH Q lcl|Aclame:pro 1 MAQIVDVYGN----PIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQ----------------AQ 60 (526) Q Consensus 1 m~~~~~~~g~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~----------------~~ 60 (526) |-+-+=.--| ||++.. +........|.. ...+.+ ..++.++.-.++ .| T Consensus 1 ~~~~~~~~~~~~~m~V~~~h------p~y~a~~~~W~~-~~d~g~-----~~~k~~g~~YLPk~~~~~~~~~~d~~y~~~ 68 (488) T protein:vir:96 1 MLKCLYIKHRGFFMLTPIYH------PDYLVNAPQWLR-NLDCVM-----DNIKRKKQTYLPNLGAIPPEAKTDPKVTAL 68 (488) T ss_pred CceeEEEeecceeecccccC------HHHHHHhhhhhH-hhhhhh-----HHHHHhhhhcCCCCCCccccccCcchhhhh Confidence 4432222112 222111 111111111110 000111 112222211111 11 Q ss_pred ----HHHHHHHHhc----cHHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhcCcCHHHHHHHHHH-hhh Q lcl|Aclame:pro 61 ----AELFMDMEER----DAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALD-GIG 131 (526) Q Consensus 61 ----~~l~~~m~~~----D~~v~s~l~~Rk~av~~~~w~v~~~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~ld-a~~ 131 (526) .+-|+....+ =+++.-.++.-...|.+.++.++-++ ...+..+++.+=..-.+++.+++.++. ++. T Consensus 69 ~~~~~~~y~~~~~~rA~~~n~~~~tl~~l~G~vfrk~p~~~~~~-----~~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~ 143 (488) T protein:vir:96 69 AAKIEKDWEDLTWRLANYVNIVNPTMNAITGAVMRREPEFDTMD-----NPVLIGLRDNIDGKGNGIDQECKQALNALQW 143 (488) T ss_pred hccchhhhHhhhhhccccCchhHHHHHHhcchhhccCceeccCC-----cHHHHHHHhccCCCCCCHHHHHHHHHHHHHh Confidence 1112211111 24455555555555666666664221 122433333221111247888887774 777 Q ss_pred hcceeeeEEEe------------------------------e--cCCeeEEeeeeee------cCcee-------Eecc- Q lcl|Aclame:pro 132 HGYSCIELEWA------------------------------L--QGREWMPLAFHHR------PQSWF-------QLNP- 165 (526) Q Consensus 132 ~G~s~~Ei~w~------------------------------~--~~g~~~~~~l~~r------~~~~f-------~~~~- 165 (526) ||.+.+=+.+- . .+|...+..+..+ ++..+ .+.. T Consensus 144 ~G~~~ilVD~P~~~~T~ade~~~~~rPy~~~~~a~~IinW~~~~v~G~~~L~~v~lrE~~~~~D~~~~~~~~~~~~~~l~ 223 (488) T protein:vir:96 144 GSRCGWLVRSHPESATMADWNKGKKLPTAAFYDALHIIDWEVEYIDGEEKLTYLSLLEDYQERDGGTYVSKQRLINHRLV 223 (488) T ss_pred cCeEEEEEecCCCcCCHHHHHHhcCCcEEEEechhhhcCcceeccCCceeeEEEEEEEEEEeccCCCcccceEEEEEEEE Confidence 88765543331 1 2332222222221 11100 0000 Q ss_pred cCCceEE-eccCCCCceeecC------C---CeEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceE Q lcl|Aclame:pro 166 EDQNELR-LRDNSPAGEALQP------F---GWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIR 235 (526) Q Consensus 166 ~~~~~l~-~~~~~~~g~~lp~------~---k~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~ 235 (526) ++...+. ...+...+...|. . -|+++ +....+-..+.+.|..++..-+---....+.-..+..-+.|+. T Consensus 224 ~g~~~v~~~~~~~~~~e~~~~~~g~~~l~~IP~v~~-~~~~~~~~~~~pPLldLA~lnl~Hy~~ssd~~~il~~~~~p~l 302 (488) T protein:vir:96 224 DGLCEFQEVTDDEYSDEWTPVLINSKQSDTIPFFLA-SSQSNEWCIDSTPLTSLAEISLSIYVMNAYSNKAMILANEAKW 302 (488) T ss_pred CcEEEEEEEecCCcccceEeecCCCcccCeeEEEEE-ecCCCCCCCCCCchHHHHHHHHHHHhhhhHHHHHHHhcCCcee Confidence 1111111 1111111111111 1 13322 2222333345555556655443222333344444555667766 Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhcCeEEEecCCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccch Q lcl|Aclame:pro 236 LGKYPPGTADEEKATLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGG 315 (526) Q Consensus 236 vgk~~~~~~~~e~~~l~~al~~~~~~~~~iip~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~g 315 (526) +-..+ +.+++........=..++.......|.| .++|++++.. ...+.-++.+.++|.. +....++... +.++ T Consensus 303 v~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~g-~~~~~e~~~~--~l~~~~l~~l~~qm~~-~Ga~l~~~~~--~~Ta 375 (488) T protein:vir:96 303 MVDMG-DMNKTMASEMNPLGFTLAGRMPYYVKNG-DVKVIQAQFS--PETENKVEKLFEQAVK-VGASLFTQQS--NETA 375 (488) T ss_pred eeccC-CCCcccccccccceeeecccccccccCC-ceeecCCchh--HHHHHHHHHHHHHHHH-HhHhhccCCC--cchH Confidence 64332 3333322222111112233333334555 5788886532 2334456666666633 2233443321 2233 Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-cccceeEEecCc---cccCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 316 AFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPD-VRRAPRLVFDLR---EQADITSMAQSIPALVNVG 391 (526) Q Consensus 316 S~a~~~vh~~v~~~~~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~-~~~~p~~~~~~~---e~edl~~~a~~~~~l~~~G 391 (526) +.+ .........++.+-+..+++.++ +++.++..+-...... ...-+.|.+... ..-| ....+.+.++...| T Consensus 376 ~~~--~~~~~~~~S~L~~~a~~le~al~-~~l~~~A~w~g~~~~~~~~~~~~~~in~dF~~~~ld-~~~~~al~~~~~~G 451 (488) T protein:vir:96 376 TGA--AIRSGSSTASMATLGNNVEDTVR-NMLRFIMRYFEGTNLYVNPDELVFKLNRDYFDVEVN-PQMLQVAYAAMMEG 451 (488) T ss_pred HHH--HHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCcCccceEEEeccCCCCccCC-HHHHHHHHHHHhcC Confidence 332 23334446788888999999996 5889888875422110 011234544321 1122 23456666677778 Q ss_pred CcCCHHHHHHHh---CCCCCC-ccchhcc-cCCCcccc Q lcl|Aclame:pro 392 LEIPSAWVYDKL---GIPQPA-KNEPVLR-SAAQPAIL 424 (526) Q Consensus 392 ~~v~~~~~~e~~---Glp~~~-~~e~~~~-~~~~~~~~ 424 (526) . |+.+.+++.+ |+=.|+ +.|++.. -....... T Consensus 452 ~-Is~~t~~~~L~~~gvl~~d~~~e~~~~~ie~~g~~~ 488 (488) T protein:vir:96 452 N-LPQVSWFELLKRARVVRGDMSKEEFDEHIAELGFGM 488 (488) T ss_pred C-CCHHHHHHHHHhCCcCCccCCHHHHHHHHhhcCCCC Confidence 6 8876554443 441111 1111111 00000000 No 227 >protein:vir:103177 Length: 533 # NCBI annotation: gp131 # Family: family:all:1036 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717798;genbank:gi:113200635;genbank:GeneID:4239186 Probab=46.67 E-value=0.73 Score=21.34 Aligned_cols=438 Identities=11% Similarity=0.019 Sum_probs=170.1 Q ss_pred CCeeecCCCCccCccccc-hhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHHHHHHHhccHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLR-EPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMS 79 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l~~~m~~~D~~v~s~l~ 79 (526) ||+|+|-.=++.+.+.-- -+.++.--.-...+..+ +.+. ...++ +..-.+-..+..-|+.|. .++.|-++++ T Consensus 1 m~~lfg~~i~~~~~~~~~~s~~~~~~~dg~~~i~~~---~~~~-~~~~~--e~~~~~~~eLI~~YR~ma-~~pEvd~Av~ 73 (533) T protein:vir:10 1 MSQLFGFSLERAKKAPKGPSFVQKDNLDGSQPVSGG---GYYG-YTVDF--DGQVRNEYQLISRYREMV-LQPECDSAVD 73 (533) T ss_pred CccccccccccccccccCCCCCCCCcccccceeecc---cccc-eeeec--ccccchHHHHHHHHHHHh-hccchhhHHH Confidence 999887543333221100 00111000000011111 1110 00111 001112334567777887 4999999999 Q ss_pred HHHHHHhcCC-----ceEecCCCCCHHHHH----HHHHHHHHHhcCcCHHHHHHHHHH-hhhhcceeeeEEEeecCCeeE Q lcl|Aclame:pro 80 KRKRAILGLD-----WAVEPPRNASAAEKA----DADYLHELLLDLEGLEDLLLDALD-GIGHGYSCIELEWALQGREWM 149 (526) Q Consensus 80 ~Rk~av~~~~-----w~v~~~~~~~~~~~~----~a~~v~~~l~~~~~~~~~i~~~ld-a~~~G~s~~Ei~w~~~~g~~~ 149 (526) -....+.-.+ -.|.- +.....+. +.+..+.+++-+ +|+.-..++.. -.-.|--.+.++-+.++..-. T Consensus 74 eIVneaiv~d~~~~pV~i~L--d~~~~s~~iK~kI~eEF~~Il~ll-~F~~~~~e~fR~WYVDgRi~fHkiid~~~pk~G 150 (533) T protein:vir:10 74 DIVNETICGNFDDVPVSVEL--SNLKVSDKIKKLIREEFGEILRLL-DFENRSYEIFRRWYVDGRLFYHKVIDPDNPQGG 150 (533) T ss_pred HhhcceeeecCCCceEEEEe--cccccchHHHHHHHHHHHHHHHHh-ccchhhhHHHhhhhhcceEEEEEEecCCCcccc Confidence 9987665332 12222 11122333 333333333222 23333333321 111233333443333332223 Q ss_pred EeeeeeecCceeEec------ccCC---------------ceEEecc-----CCCCceeecCCCeEEEeecCC--CCccc Q lcl|Aclame:pro 150 PLAFHHRPQSWFQLN------PEDQ---------------NELRLRD-----NSPAGEALQPFGWIIHRPRAR--SGYVA 201 (526) Q Consensus 150 ~~~l~~r~~~~f~~~------~~~~---------------~~l~~~~-----~~~~g~~lp~~k~i~~~~~~~--~g~p~ 201 (526) +.++...+|+.+++- ..++ ..+++.. ++..+..+|. .-|+|.|..- .++.. T Consensus 151 I~ELr~lDPr~i~~vr~i~~~~~~~~~~~~~~~~v~~~~~eyf~Ynp~g~~~~~~~~vkI~~-dAI~y~hSGl~d~~~~~ 229 (533) T protein:vir:10 151 LIELRYIDPRKIRKINETEQKRPEQLRGLPLNQQLSPKSAEYFLYDPKGLKNSTTQGLKIAP-DSICYVHSGIMDLNKNM 229 (533) T ss_pred ceeeeeccccceeeeeeeeccCCCccceeecchhhhccceeeeeeccccccccCCCceecch-hheeeeeccceeCCCCc Confidence 344555555544431 1111 0112211 2234555666 6677777432 22223 Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHcCCc-eEEEecCCCCCHHHHH--HHHHHHHHhhcC------eEE-------- Q lcl|Aclame:pro 202 RSGLFRVLAWPYLFRHYATSDLAEMLEIYGLP-IRLGKYPPGTADEEKA--TLLRAVTGLGHA------AAG-------- 264 (526) Q Consensus 202 g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P-~~vgk~~~~~~~~e~~--~l~~al~~~~~~------~~~-------- 264 (526) =.|.|+.+..++-=-+...-..+.|- .-=.| =||.=.+-|.-+..|. -|.+.+....+. ++- T Consensus 230 i~syLhkAiKp~NQLkm~EDAlVIYR-itRAPeRRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev~ddrk~m 308 (533) T protein:vir:10 230 TLSHLHKAIKAVNQLRMIEDSLVIYR-LSRAPERRIFYIDVGNLPKNKAEQYLREVMGRYRNKLVYDANTGEIKDDKKFM 308 (533) T ss_pred eeccchHhHHHHHhhHHHHhhHHHHh-hhccccceEEEEecCCCCchhHHHHHHHHHHhccceEEEeccCceecccchhh Confidence 34788888888765555444333332 11223 2222223333222221 122222222211 111 Q ss_pred ------Eec-----CCceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhh-hhhHH-HHHH-HHHH Q lcl|Aclame:pro 265 ------IIP-----ETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAF-ALGQV-HNEV-RHDL 330 (526) Q Consensus 265 ------iip-----~~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~-a~~~v-h~~v-~~~~ 330 (526) -+| .|++|..+.++++-+.. .=++|..+.+-+++..+.--.+. ++ +-+. ..+++ ..++ |... T Consensus 309 sMlEDyWLPRReGgrgTEItTLpGgqnLgem--~DV~YF~kKLY~aLnVP~SRl~~-e~-~f~~Gr~~EItRDEiKF~KF 384 (533) T protein:vir:10 309 SMLEDFWLPRREGGRGTEITTLPGGQNLGEL--EDVKYFQKKLYKSLNVPGSRLET-ET-TFNVGRAAEITRDEVKFQKF 384 (533) T ss_pred hhHhhhcccccCCCCccceeeccccCCcChH--HHHHHHHHHHHHHhCCCccccCC-CC-cccccccchhhHHHHHHHHH Confidence 122 46899999876554442 34899999999998776533332 22 2111 11222 3333 4455 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-cccceeEEecCccc------cCHHHHHHHHHHHHhC----CCcCCHHHH Q lcl|Aclame:pro 331 LASDARQLAATLSRDLLWPLLVLNRPGSPD-VRRAPRLVFDLREQ------ADITSMAQSIPALVNV----GLEIPSAWV 399 (526) Q Consensus 331 ~~ad~~~i~~~ln~~li~~l~~~Nf~~~~~-~~~~p~~~~~~~e~------edl~~~a~~~~~l~~~----G~~v~~~~~ 399 (526) +..-...++..|..-|-..|+-=|--.... ......+.|+...+ .+.+.+.+++..|..+ |--++.+|+ T Consensus 385 I~RLR~rFs~lF~~~Lk~qLiLKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi 464 (533) T protein:vir:10 385 VARLRKRFSELFTDLLKTQLVLKGVISIEEWDQMKEHIQYDYIADNYFAELKEIEIRNERMNQVATMDPFVGKYFSVEYM 464 (533) T ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEeeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHH Confidence 555555566555543333333222111000 01112333333222 2333444555555443 445788888 Q ss_pred HHHh-CCCCCCccc-------hhc-ccCCCcccc-----cccccccccccccccccccccccchHHHHHHHH Q lcl|Aclame:pro 400 YDKL-GIPQPAKNE-------PVL-RSAAQPAIL-----SRQHGQRVAALATIVGPRYGDQQALDKALADLP 457 (526) Q Consensus 400 ~e~~-Glp~~~~~e-------~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (526) ++.+ .+.+.+-.+ +.. +--+.|... .+..+...+..+...++..+. +.+++- .+. T Consensus 465 ~k~ILr~tDeei~~~~kqI~~E~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~ 533 (533) T protein:vir:10 465 RRQVLKQTDVEMKEIDKQIESEMESGIIADPAAEMDPAMAAGDPDAGGAPAEEVAPEGPD--PSDERK-AEF 533 (533) T ss_pred HHHHhccCHHHHHHHHHHHHHHHhCCCCCCCcchhhHHhcCCCCCcCCcccccCCCCCCC--cchhhc-cCC Confidence 7763 443211110 000 000011000 000001111111111111111 111110 000 No 228 >protein:vir:101541 Length: 694 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958122;genbank:gi:41057668;genbank:GeneID:2716798 Probab=46.33 E-value=0.74 Score=21.30 Aligned_cols=477 Identities=13% Similarity=0.090 Sum_probs=177.5 Q ss_pred CCeeecCCCCccCccc--cchh-hhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccC--C------------CHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQ--LREP-QTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQ--G------------NLQAQAEL 63 (526) Q Consensus 1 m~~~~~~~g~p~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~--g------------~~~~~~~l 63 (526) |+-=.+..|..-..+. ..+| .+-.++ +.+. --+.+.||.-...+ .-+-+ | .+.-|.- T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~F~Gy~~- 114 (694) T protein:vir:10 41 VPADFARRGALNALDAAPVAEPSPSLRLA---RQFE-VDVSNYTPRERRAA-SYALDFNGTSMDALSFVTSSGFPGFPT- 114 (694) T ss_pred ccCCccccccchhhcccccCCCCcchhhh---hhcc-ccccCCCccccchh-hhhhccCcccccchhhhhccCcchHHH- Confidence 3332222333222111 1111 111111 1110 00112222221111 11000 0 0111111 Q ss_pred HHHHHhccHHHHHHHHHHHHHHhcCCceEecC--------------CCCCH-HHHHHHHHHHHHHhcCcCHHHHHHHHHH Q lcl|Aclame:pro 64 FMDMEERDAHLFAEMSKRKRAILGLDWAVEPP--------------RNASA-AEKADADYLHELLLDLEGLEDLLLDALD 128 (526) Q Consensus 64 ~~~m~~~D~~v~s~l~~Rk~av~~~~w~v~~~--------------~~~~~-~~~~~a~~v~~~l~~~~~~~~~i~~~ld 128 (526) ...| .+=+.++++..+.-....+. |.-... ++... .+....+.++..++++--++.+..-+-. T Consensus 115 la~l-aQ~~eyr~~~~~ia~e~~R~-w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erl~V~~~l~eaik~ 192 (694) T protein:vir:10 115 LVLL-AQLPEYRAMHEVLADECIRT-WGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIH 192 (694) T ss_pred HHHH-hhccchhhHHHHHHHHhhcc-cceeccccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 1112 23556666677766666554 722111 11101 1112334455556665434555555567 Q ss_pred hhhhcceeeeEEEeecCC----ee----------EEeeeeeecCceeEecccCC-ceEE-----eccCCCCceeecCCCe Q lcl|Aclame:pro 129 GIGHGYSCIELEWALQGR----EW----------MPLAFHHRPQSWFQLNPEDQ-NELR-----LRDNSPAGEALQPFGW 188 (526) Q Consensus 129 a~~~G~s~~Ei~w~~~~g----~~----------~~~~l~~r~~~~f~~~~~~~-~~l~-----~~~~~~~g~~lp~~k~ 188 (526) +-+||-+++=+.=.-++. -+ .++.|...++.|......+. ..+. -..-...|..+...++ T Consensus 193 aRlfGGa~~~i~I~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~G~~IH~SRL 272 (694) T protein:vir:10 193 DQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGTEVHATRL 272 (694) T ss_pred hccccceEEEEEeecCccccccccccccccccCcceeeeEeecccccccchhhhccchhhccCCCceEEEeceEEeeeeE Confidence 999998875443222221 11 12235556666655432211 0000 0000011223333333 Q ss_pred EEEeecC------CCCccccchhHHHHHHHHH---HHHHHHHHHHHHHHHcCCceE-E--EecCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 189 IIHRPRA------RSGYVARSGLFRVLAWPYL---FRHYATSDLAEMLEIYGLPIR-L--GKYPPGTADEEKATLLRAVT 256 (526) Q Consensus 189 i~~~~~~------~~g~p~g~gLl~~~~~~~~---fK~~~~~~w~~f~E~~G~P~~-v--gk~~~~~~~~e~~~l~~al~ 256 (526) +.+.... ..-+.+|.++...++..+. -.+......+ .++.+... + .+.-.+....+...-.+.+. T Consensus 273 ~~f~g~plPd~LKp~y~~~G~Sv~q~~~e~V~~~~rT~~~v~~Li---~~~~v~~lk~dla~~L~~g~~~~l~~R~eli~ 349 (694) T protein:vir:10 273 HTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIV---KQFSVSGILMDLAQALMPGANVDLSMRAELIN 349 (694) T ss_pred EEecCCCchhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHHHH---HhhhhHHHHHHHHHhhcChhHHHHHHHHHHHH Confidence 3332211 1234578888888774432 2222222222 22221111 0 00001112223333345556 Q ss_pred HhhcC-eEEEecC-CceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 257 GLGHA-AAGIIPE-TMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASD 334 (526) Q Consensus 257 ~~~~~-~~~iip~-~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad 334 (526) .+.++ +..++.+ +.+++.++.+=++ ...++...-.+||-+. +-.+|---|..-.|=+|.|+.-..+.-|.+++. T Consensus 350 ~~Rsn~G~~llDk~~Eefeq~stslSG---LddVi~qf~q~VAgaa-~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~ 425 (694) T protein:vir:10 350 RYRDNRNILFLDKATEEFFQFNTPLSG---LDALQAQAQEQMSAVS-HIPLIKLLGITPTGLNASSEGEIRVWYDYVRAY 425 (694) T ss_pred HhcCccceEEEecCCcceEEEecccCC---HHHHHHHHHHHHHhhh-cCchhhhhccCcccccccchhhHHHHHHHHHHH Confidence 66665 4556774 5778877754222 4456666666676653 333332223334466677787788888888877 Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccC------H-HHHHHHHHHHHhCCCcCCHHHHHHHhCCCC Q lcl|Aclame:pro 335 ARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQAD------I-TSMAQSIPALVNVGLEIPSAWVYDKLGIPQ 407 (526) Q Consensus 335 ~~~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~ed------l-~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~ 407 (526) ....-.-.=+.++.-|..--|+.. ++. -.|+|..-.+-+ + ++.|+.++.+++.|+ |+.+++++++.-++ T Consensus 426 Qe~~L~p~L~rl~~ii~rS~~G~i-dp~--i~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gv-I~~~evr~rL~~d~ 501 (694) T protein:vir:10 426 QRNALQQLMNDVIVMIQLSLFGAV-DPS--IKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQV-IRPDQVAARLNTEP 501 (694) T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-CCc--ceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcC-CCHHHHHHHHhcCC Confidence 754433333345544444344432 322 234444322222 2 345678888999988 99999999975532 Q ss_pred CCccchhcccCCCcccccc-----------------cccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 408 PAKNEPVLRSAAQPAILSR-----------------QHGQRVAALATIVGPRYGDQQALDKALADLPAKDMQNQANDLLA 470 (526) Q Consensus 408 ~~~~e~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (526) ...--..+...-.|..+.. ..+....+.++...+ +....+.-.+... T Consensus 502 ~s~Y~~~~D~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~v~~~~~~~~~~-------------- 565 (694) T protein:vir:10 502 DGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAP--PTVANVNANVNPR-------------- 565 (694) T ss_pred CcccccccccccCCCcCccchhhhhHhhhcCcccccccCCCCcccccccCC--CcccccccccCcc-------------- Confidence 2111000000000000000 000000000000000 0000000000000 Q ss_pred HHHHHHHhcCCHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhHHhhhhhccC Q lcl|Aclame:pro 471 PLLEAVNRGDSET-ELLGALAEAFPDMDDSALTDALHRLLFAADTWGRLHGNLDRID 526 (526) Q Consensus 471 ~i~~~~~~a~s~e-e~~~~L~~l~~~l~~~~l~~~l~~a~~~A~l~G~~~~~~e~~d 526 (526) -..+.++- ..... .+- -+..-| ++.+ -+-.||-=.+.-|.-+ T Consensus 566 -----~ag~~~~~~~~ag~---v~~-~~g~vL--l~kr---~~g~W~lPgG~vE~gE 608 (694) T protein:vir:10 566 -----EAGAQDAAMRAAGA---VYV-VDGKVL--LMKR---PAGDWGLPAGKVEGNE 608 (694) T ss_pred -----ccCCCCccceeeEE---EEE-eCCEEE--EEEe---cCCCccCCccccCCCC Confidence 00000000 00000 000 000000 0011 0122222222223333 No 229 >protein:vir:103765 Length: 549 # NCBI annotation: hypothetical protein # Family: family:all:481 # MgeID: mge:1645 # MgeName: BcepC6B # Cross-refs: genbank:acc:YP_024925;genbank:gi:48697195;genbank:GeneID:2846089 Probab=32.49 E-value=1.4 Score=19.75 Aligned_cols=424 Identities=10% Similarity=0.035 Sum_probs=141.4 Q ss_pred CCee---e--c----CCCC-----ccCccccc--hhhhhh-hhhhhhhhhhhhhcccCHHHHHHHHHcccCCCHHHHHHH Q lcl|Aclame:pro 1 MAQI---V--D----VYGN-----PIRTQQLR--EPQTSR-LAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAEL 63 (526) Q Consensus 1 m~~~---~--~----~~g~-----p~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g~~~~~~~l 63 (526) +|+. . + +.|+ +++....+ ...++. ..++....+.| .+|.+.. ..+.+. .....+.+- T Consensus 38 lP~~~~~~~~~~~~~~~~~~~~~~~~dstg~~a~~~LAs~l~~~ltpp~~~w--F~l~~~~--~~~~e~--~~v~~~l~~ 111 (549) T protein:vir:10 38 MPRLDKFGQLPRPDSEKGRERSQKMFDSTAPLALRNFVAAMDSMITPATQLW--HRLKTGN--DALNEI--ASVKAYLQG 111 (549) T ss_pred ccccccccccCCCCCCcccccccccccchHHHHHHHHHHHHHhhccCCCCcc--ccccCCc--cchhhh--hHHHHHHHH Confidence 3332 1 1 1121 22211110 000111 11111111111 1122111 000000 001111111 Q ss_pred HHHHHh------ccHHHHHHHHHHHHHH-hcC-CceEecCC--------------------CCCHHH-----HHHHHHHH Q lcl|Aclame:pro 64 FMDMEE------RDAHLFAEMSKRKRAI-LGL-DWAVEPPR--------------------NASAAE-----KADADYLH 110 (526) Q Consensus 64 ~~~m~~------~D~~v~s~l~~Rk~av-~~~-~w~v~~~~--------------------~~~~~~-----~~~a~~v~ 110 (526) .++.+. +-.-+....+.-+..+ .|- -+.+.+.. ....+. +-.+..+. T Consensus 112 ve~~~~~~~~~~~snf~~~~~~~~~~L~~~Gta~l~~~~~~~~~~~f~~~pl~~~~v~~d~~G~vd~i~r~~~~t~~ql~ 191 (549) T protein:vir:10 112 VVRTLFAARYRWQGGFVTQMGATYQSIGLFGPGALMIEHDVGKGIVYRNVPMQRLWFAENNSGLIDKTHVQWELTLRQAA 191 (549) T ss_pred HHHHHHHHHhhhhcChHHHHHHHHHHHHhhcceeeEEeecCCCeeEEEEEEcCeEEEeeCCCCCeEEEEEEeecCHHHHH Confidence 111110 0111112222222222 121 11122110 000000 00001111 Q ss_pred HHHhcCcCHHHHHHHHHHhhh-hcceeeeEEEeecCCeeEEeeeeee--cCceeEecccCCceEEeccCCCCceeecCCC Q lcl|Aclame:pro 111 ELLLDLEGLEDLLLDALDGIG-HGYSCIELEWALQGREWMPLAFHHR--PQSWFQLNPEDQNELRLRDNSPAGEALQPFG 187 (526) Q Consensus 111 ~~l~~~~~~~~~i~~~lda~~-~G~s~~Ei~w~~~~g~~~~~~l~~r--~~~~f~~~~~~~~~l~~~~~~~~g~~lp~~k 187 (526) +.+. .+.+.+-++..++.-- .-|.+++.|+-+.+.. +.+...+ |-..+.+. .+...++ .+.+ +..+- T Consensus 192 ~~fg-~~~l~~~v~~~~~~~~~~~~~v~~~V~pr~~~~--~~~~~~~~~pf~sv~~e-~~~~~il-~esg-----~~e~P 261 (549) T protein:vir:10 192 QRFG-RENLSPSMQSTLEKDPEKSAIFYHAVEPRADRD--PRKLDGRNMQFASYWLD-EGRDRIV-QNSG-----FRTFP 261 (549) T ss_pred HhcC-cccCCHHHHHHhhcCCCceEEEEEEeecCCCCC--ccccccccCceEEEEEE-ecCCEee-ccCC-----cccCC Confidence 1111 1123334444443111 1133333333222111 1111111 11122222 2223332 2222 34566 Q ss_pred eEEEeecCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCC-CCHHHHHHHHHHHHHhhcCeEEEe Q lcl|Aclame:pro 188 WIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPG-TADEEKATLLRAVTGLGHAAAGII 266 (526) Q Consensus 188 ~i~~~~~~~~g~p~g~gLl~~~~~~~~fK~~~~~~w~~f~E~~G~P~~vgk~~~~-~~~~e~~~l~~al~~~~~~~~~ii 266 (526) |++.|+...+|+.||.|....++.-..--+...+.-+..+++---|+-+. |+. .... . .+ ..-+.+.+.+- T Consensus 262 ~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~~v--~~~g~~~~-~-~l----~pgg~~~~~~~ 333 (549) T protein:vir:10 262 FAIGRFYVGTDDVYGGSPAYDAMPDVRMANDMAKTNIRGAQKLVDPPLLA--NEDGVLDG-F-DL----RSGALNWGGLN 333 (549) T ss_pred cceeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceee--cccccccc-c-ee----ccCCccccccC Confidence 89999999999999999999999999999999999999999988776653 322 2111 1 11 11111222222 Q ss_pred cCCceEEEeec-CCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHH--HHHHHHHHHHHHHHH Q lcl|Aclame:pro 267 PETMAIDFQQA-AQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRH--DLLASDARQLAATLS 343 (526) Q Consensus 267 p~~~~ie~~~a-~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~--~~~~ad~~~i~~~ln 343 (526) +.+ ...+... .++.-..-...|+.+.+.|+.+++..-+... .+ +...-..||+....+ ..+-.... .|. T Consensus 334 ~~~-~~~~~pl~~~~~~~~~~~~i~~~~~rI~~af~~d~~~~~-~~--~~~~TAtEV~~r~~E~~~~LGpv~~----rl~ 405 (549) T protein:vir:10 334 DKG-EEMVKPLLTGKQAQIGIEFAQDTRQTINQWFYVTLFQIL-VD--SGDMTATEVLQRAQEKGVLLAPTLG----RTQ 405 (549) T ss_pred CCC-ccceeeeccccchhHHHHHHHHHHHHHHHHHhhhhhhhh-cC--CCCccHHHHHHHHHHHHHHhhHHHH----HHH Confidence 233 2223322 2233444567899999999999976543221 11 122334455544322 22222222 222 Q ss_pred HHHHHHHHH--------hcCCCCCCcccc-e--eEEecCcc-------ccCHHHHH---HHHHHHHhCCC----cCCH-- Q lcl|Aclame:pro 344 RDLLWPLLV--------LNRPGSPDVRRA-P--RLVFDLRE-------QADITSMA---QSIPALVNVGL----EIPS-- 396 (526) Q Consensus 344 ~~li~~l~~--------~Nf~~~~~~~~~-p--~~~~~~~e-------~edl~~~a---~~~~~l~~~G~----~v~~-- 396 (526) ..++-||+. -|--+..+.... | .+.+.... ..++..+. +.+..|..+|= .|+. T Consensus 406 ~E~l~Pli~R~~~il~r~g~lP~~p~~l~~~~~~~~i~yis~La~aq~~~~~~~i~~~~~~~~~laq~~Pe~ld~id~d~ 485 (549) T protein:vir:10 406 SELLGPMIAREVDILAEAGQLPDMPQELIDAGADVDVEYDSPLNKAMRAGEGAAILQWLQQLGIVSQFDPAAAKVPNGAR 485 (549) T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCChhhhcCCceeEEEeecHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHhcCCHHH Confidence 233333332 121121111111 1 12222211 12222222 22222222221 1332 Q ss_pred --HHHHHHhCCCCC--CccchhcccCCCcccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 397 --AWVYDKLGIPQP--AKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALADLPAKDMQNQANDLLAPL 472 (526) Q Consensus 397 --~~~~e~~Glp~~--~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 472 (526) .++.+.+|+|.. ..++++...... .. .++. ...+ .........+.+. +.+- T Consensus 486 ~~~~~a~~~Gvp~~~irs~eev~~~r~~-------~~---------------~qqq-~~~~-~~~a~~a~~~a~~-~~~~ 540 (549) T protein:vir:10 486 IARLLADYGGVPVEAMSTDEELQAQQAA-------EA---------------QAAQ-MQQM-LAAAPVAAGAIKD-LSDA 540 (549) T ss_pred HHHHHHHhcCCCccccCCHHHHHHHHHH-------HH---------------HHHH-HHHH-HHHHHHHHHHHHh-hhhh Confidence 466677888742 112221110000 00 0000 0000 0000000011111 1111 Q ss_pred HHHHHhcCC Q lcl|Aclame:pro 473 LEAVNRGDS 481 (526) Q Consensus 473 ~~~~~~a~s 481 (526) ..+.+.+.- T Consensus 541 ~ta~~~~~~ 549 (549) T protein:vir:10 541 QTAAQTARV 549 (549) T ss_pred cCCCcccCC Confidence 111111111 No 230 >protein:vir:106716 Length: 698 # NCBI annotation: gp18 # Family: family:all:297 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944326;genbank:gi:38638625;genbank:GeneID:2657345 Probab=24.45 E-value=2.2 Score=18.73 Aligned_cols=472 Identities=14% Similarity=0.082 Sum_probs=170.6 Q ss_pred CCeeecCCCCccCccccchhhhhhhhhhhhhhhhhhhcccCHHHHHHHHHcccCC--------------CHHHHHHHHHH Q lcl|Aclame:pro 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQG--------------NLQAQAELFMD 66 (526) Q Consensus 1 m~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~g--------------~~~~~~~l~~~ 66 (526) |++- -.=+.++..++.+|.. .+ .+.+.+- --..+.||.. +++..-+-+. .+.-|.-| .. T Consensus 46 ~~~~--~~~~~~~~~~~~~~~~-~~-~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~~l-a~ 118 (698) T protein:vir:10 46 MGRR--GALNALDAAPVAEPSP-SL-RLARQFE-VDVSNYTPRE-RRAASYALDFNGTSMDALSFVTSSGFPGFPTL-VL 118 (698) T ss_pred hccc--ccccccccccccCCCc-cc-cccccce-eccccCCccc-cchhhhhhcccccccccchhhhccCcchHHHH-HH Confidence 3320 0001111111111100 00 0011110 0011222221 1111111110 01111111 11 Q ss_pred HHhccHHHHHHHHHHHHHHhcCCceEecC--------------CCCCH-HHHHHHHHHHHHHhcCcCHHHHHHHHHHhhh Q lcl|Aclame:pro 67 MEERDAHLFAEMSKRKRAILGLDWAVEPP--------------RNASA-AEKADADYLHELLLDLEGLEDLLLDALDGIG 131 (526) Q Consensus 67 m~~~D~~v~s~l~~Rk~av~~~~w~v~~~--------------~~~~~-~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~ 131 (526) | .+=+.++++..+.-....+. |.-... ++... .+....+.++..++++--++.+..-+-.+-+ T Consensus 119 l-aQ~~eyr~~~~~ia~e~~R~-w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erl~V~~~l~eai~~aRl 196 (698) T protein:vir:10 119 L-AQLPEYRAMHEVLADECIRT-WGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQA 196 (698) T ss_pred H-hhccchhhHHHHHHHHhhcc-cceeccccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhccc Confidence 2 24556666677766666554 722111 11101 1112334455556665435555555567999 Q ss_pred hcceeeeEEEeecCC----ee----------EEeeeeeecCceeEecccCC-ceEE-----eccCCCCceeecCCCeEEE Q lcl|Aclame:pro 132 HGYSCIELEWALQGR----EW----------MPLAFHHRPQSWFQLNPEDQ-NELR-----LRDNSPAGEALQPFGWIIH 191 (526) Q Consensus 132 ~G~s~~Ei~w~~~~g----~~----------~~~~l~~r~~~~f~~~~~~~-~~l~-----~~~~~~~g~~lp~~k~i~~ 191 (526) ||-+++=|.=+-++. -+ .++.|...++.|......+. ..+. -..-...|..+...+++.+ T Consensus 197 fGGa~~~i~I~gdd~~l~~PL~~~~~~I~kGslKGL~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~G~~IH~SRL~~~ 276 (698) T protein:vir:10 197 FGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGSEVHATRLHTI 276 (698) T ss_pred ccceEEEEEeecCccccccccccccccccCccceeeeeecccccccchhhhccchhhccCCCceEEEecceecceeEEEe Confidence 998885443322221 11 12235555666655432211 0000 0000011223444444433 Q ss_pred eecC------CCCccccchhHHHHHHHHHH---HHHHHHHHHHHHHHcCCceE---EEec-CCCCCHHHHHHHHHHHHHh Q lcl|Aclame:pro 192 RPRA------RSGYVARSGLFRVLAWPYLF---RHYATSDLAEMLEIYGLPIR---LGKY-PPGTADEEKATLLRAVTGL 258 (526) Q Consensus 192 ~~~~------~~g~p~g~gLl~~~~~~~~f---K~~~~~~w~~f~E~~G~P~~---vgk~-~~~~~~~e~~~l~~al~~~ 258 (526) .... ..-+.+|.++...++..+.- .+...... +.++.+... +.+. ..+. ..+...-.+.+..+ T Consensus 277 vg~pvpd~LKp~y~f~G~Sv~q~~~e~V~~~~rT~~~v~~L---i~~~~~~~l~~dla~aL~~g~-~~~l~~R~eli~~~ 352 (698) T protein:vir:10 277 VSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDI---VKQFSVSGILMDLAQALTPGA-NVDLSMRAELINRY 352 (698) T ss_pred cCCCchhhhcchhccCCccHHHHHHHHHHHHHHHhhhHHHH---HHHhhHHHHHHHHHHhcCChh-hHHHHHHHHHHHHh Confidence 3221 12345688888887755321 11111111 111111110 0000 1122 22233334555556 Q ss_pred hcC-eEEEecC-CceEEEeecCCCChHHHHHHHHHHHHHHHHHHhchhhhcccccccchhhhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 259 GHA-AAGIIPE-TMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDAR 336 (526) Q Consensus 259 ~~~-~~~iip~-~~~ie~~~a~~~~~~~~~~li~~~d~~Isk~ilGqtltt~~~~~~~gS~a~~~vh~~v~~~~~~ad~~ 336 (526) .++ +..++.+ +.+++.++.+=++ ...++...-.+||-+. +-.+|---|..-.|=+|.|+.-..+.-|.+++... T Consensus 353 Rsn~G~~llDk~~Eefeq~st~lSG---LddVi~qf~q~VAgaa-~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe 428 (698) T protein:vir:10 353 RDNRNILFLDKATEEFFQFNTPLSG---LDALQAQAQEQMSAVS-HIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQR 428 (698) T ss_pred cCccceEEEecCCcceEEEecCcCC---HHHHHHHHHHHHHhhh-cCchhhhhccCCcccCccchhhHHHHHHHHHHHHH Confidence 555 4456773 5778877754222 4456666666676653 33333222333445567777777778888877765 Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccceeEEecCccccC------H-HHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCC Q lcl|Aclame:pro 337 QLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQAD------I-TSMAQSIPALVNVGLEIPSAWVYDKLGIPQPA 409 (526) Q Consensus 337 ~i~~~ln~~li~~l~~~Nf~~~~~~~~~p~~~~~~~e~ed------l-~~~a~~~~~l~~~G~~v~~~~~~e~~Glp~~~ 409 (526) .--.-+=+.++.-|..--|+. .+++ -.|+|..-.+-+ + ++.|+.++.+++.|+ |+.+++++++.-.+.. T Consensus 429 ~~L~p~L~rl~~ii~rS~~G~-idp~--i~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gv-I~~~evr~rL~~d~~s 504 (698) T protein:vir:10 429 NALQQLMNDVIVMIQLSLFGA-VDPS--IKWQWNALRELDDLEVAEARYKQAQSDVLYVQEQV-IRPDQVAARLNTEPDG 504 (698) T ss_pred HHHHHHHHHHHHHHHHHhcCC-CCCc--ceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcC-CCHHHHHHHHhccCCC Confidence 433333233444444333443 2322 234444323322 2 345677888889988 9999999997432111 Q ss_pred cc------chhcccCC-Cccccc-------c---cccc---cccccccccccccccccchHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 410 KN------EPVLRSAA-QPAILS-------R---QHGQ---RVAALATIVGPRYGDQQALDKALADLPAKDMQNQANDLL 469 (526) Q Consensus 410 ~~------e~~~~~~~-~~~~~~-------~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (526) .- ++....+. ...... + ..+. ..++.++...+....+-. T Consensus 505 ~Y~~~~d~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 563 (698) T protein:vir:10 505 PYAGKLDANDDPGAPADDDIDGVLTYVQRMAEGGDTGAPTAPGGARAGATAPPAAANVN--------------------- 563 (698) T ss_pred ccccccCCcccCCCCCCCcchHHHhhhcCCcCCCCcccccccccccCCCCCCccccccc--------------------- Confidence 00 00000000 000000 0 0000 000000000000000000 Q ss_pred HHHHHHHHhcCCHHHHHHH-HHH---HhhcCCHHHHHHHHHHHHHHHHHHhHHhhhhhccC Q lcl|Aclame:pro 470 APLLEAVNRGDSETELLGA-LAE---AFPDMDDSALTDALHRLLFAADTWGRLHGNLDRID 526 (526) Q Consensus 470 ~~i~~~~~~a~s~ee~~~~-L~~---l~~~l~~~~l~~~l~~a~~~A~l~G~~~~~~e~~d 526 (526) +....+....... +.. .+-.-+ + .-++.|. +..|+--.+.-|.-+ T Consensus 564 ------~~~~~~~~~~~~~~~~a~giv~~~g~--~-vLL~~r~---~g~W~lPgG~ie~GE 612 (698) T protein:vir:10 564 ------ANANPREAGAQDAAMRAAGIVFRAGD--K-VLLMKRP---AGDWGLPAGKVEDGE 612 (698) T ss_pred ------CCCCccccCcccceeeEEEEEEEcCC--e-EEEEEec---CCCcccCccccCCCC Confidence 0000000000000 000 000000 0 0011110 112222222222222 Done!