Query lcl|Aclame:protein:vir:103452|NCBI_annot:head completion|genbank:acc:YP_803104;genbank:gi:116326384;genbank:GeneID:4405481 Match_columns 256 No_of_seqs 35 out of 38 Neff 3.7 Searched_HMMs 1612 Date Mon Dec 2 15:54:58 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_42 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_42_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:7199 Length: 256 # 100.0 1E-143 7E-147 804.2 20.1 256 1-256 1-256 (256) 2 protein:vir:103452 Length: 256 100.0 2E-143 1E-146 803.5 20.0 256 1-256 1-256 (256) 3 protein:vir:6890 Length: 254 # 100.0 1E-139 9E-143 781.8 18.0 254 1-256 1-254 (254) 4 protein:vir:107937 Length: 257 100.0 2E-137 1E-140 770.4 16.7 256 1-256 1-256 (257) 5 protein:vir:98258 Length: 248 100.0 2E-135 2E-138 758.6 17.5 248 1-249 1-248 (248) 6 protein:vir:80995 Length: 246 100.0 3E-132 2E-135 741.3 17.5 246 3-253 1-246 (246) 7 protein:vir:6590 Length: 246 # 100.0 4E-132 3E-135 740.8 17.3 246 3-253 1-246 (246) 8 protein:vir:101154 Length: 252 100.0 5E-131 3E-134 735.0 17.0 252 3-255 1-252 (252) 9 protein:vir:101800 Length: 252 100.0 5E-131 3E-134 735.0 17.0 252 3-255 1-252 (252) 10 protein:vir:100535 Length: 253 100.0 1E-130 6E-134 733.2 18.2 253 3-256 1-253 (253) 11 protein:vir:106285 Length: 262 100.0 1E-129 9E-133 726.9 17.4 251 1-254 1-262 (262) 12 protein:vir:5658 Length: 278 # 100.0 2E-126 2E-129 709.2 18.2 256 1-256 1-267 (278) 13 protein:vir:104476 Length: 308 100.0 6E-116 4E-119 652.3 18.0 236 20-256 1-272 (308) 14 protein:vir:106986 Length: 292 100.0 2E-112 2E-115 632.4 18.1 231 25-256 1-251 (292) 15 protein:vir:103005 Length: 390 100.0 1E-101 7E-105 573.9 18.7 247 10-256 1-256 (390) 16 protein:vir:104739 Length: 470 100.0 2.5E-87 1.5E-90 495.4 17.6 230 25-256 1-280 (470) 17 protein:vir:1385 Length: 107 # 39.1 1 0.00064 20.5 9.3 106 53-175 1-107 (107) 18 protein:vir:97237 Length: 122 28.7 1.7 0.0011 19.3 10.2 121 27-173 1-122 (122) No 1 >protein:vir:7199 Length: 256 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049773;genbank:gi:9632588;genbank:GeneID:1258695 Probab=100.00 E-value=1.2e-143 Score=804.21 Aligned_cols=256 Identities=99% Similarity=1.496 Sum_probs=255.7 Q ss_pred CcccccceeeeecCCcchhhhhhcccccceEeeccccchHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccccccccc Q lcl|Aclame:pro 1 MATYDKNLFAKLENHTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKF 80 (256) Q Consensus 1 m~~~~~~lfa~le~~~gy~~~~~~~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlPRe~v~~D~v~~E~~~skF 80 (256) |+|||+|||||||+++||++||+++|||||||+|||++||+|+|+||+|||||||+|||||||++|++|+||+|+++||| T Consensus 1 m~~~d~~lfa~l~~~~gy~~~~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~~Ed~~skF 80 (256) T protein:vir:71 1 MATYDKNLFAKLENRTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKF 80 (256) T ss_pred CcccccceeeeecCCcchhhhhhhcccceeeeeeccCchhhHHHHHHHHHHHHcCceEEEechhhccccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cceeeeeeeehhhhccCCcchhhhhcCceeeeeEEEEEccchhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhh Q lcl|Aclame:pro 81 TKAWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (256) Q Consensus 81 ~~a~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~T~~IS~~rF~~~~~~~rP~EGDLIYfPm~n~lFEI~~VE~~~PFYQ 160 (256) ++||+|||||+||+||+|+++||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++|||| T Consensus 81 ~ka~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ 160 (256) T protein:vir:71 81 TKAWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (256) T ss_pred ccceeEEEEeehhhccCCccccceecCceecceEEEEEccchhhhhhcCCCCccccEEEEcCCCcEEEEEcccCCCchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cCCceEEEEEEEEEecCCCccCCCCcccccccCCcccceeeecccCCccceeccceeccccceeecccccccceeeEEcC Q lcl|Aclame:pro 161 LGQNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNN 240 (256) Q Consensus 161 ~Gk~yv~~l~ce~F~Ys~E~idtg~~~iD~i~~~~~~~l~l~~i~~~~g~~~~~~~~~~e~~~~~~e~~~~v~~~~vi~~ 240 (256) +||||||+|+|+||+||+|+|+||+++||+|+++++++|+|+++++++|++|+|+++++++++|++||++|++|++|||| T Consensus 161 ~Gkn~~~~l~ce~F~Ys~E~~~~~l~~~d~i~~~e~~eldl~~i~~ldg~~di~~~~~~e~~~i~~e~~~~ve~~~~in~ 240 (256) T protein:vir:71 161 LGQNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNAVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNN 240 (256) T ss_pred hCCCeEEEEEEEEEecCCceecccCCCCCcccCCcccccccccccccCcccccccccccchhhhhhccccccccceeecC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCcccCCCccccccC Q lcl|Aclame:pro 241 RGKSFESSPFDNDFMD 256 (256) Q Consensus 241 ~G~~~~~~pf~~~~~~ 256 (256) ||++++++||||+||| T Consensus 241 ~G~~~~~~pfd~~~~~ 256 (256) T protein:vir:71 241 RGKSFESSPFDNDFMD 256 (256) T ss_pred CCCCCcCCCccccccC Confidence 9999999999999999 No 2 >protein:vir:103452 Length: 256 # NCBI annotation: head completion # Family: family:all:1104 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803104;genbank:gi:116326384;genbank:GeneID:4405481 Probab=100.00 E-value=1.6e-143 Score=803.45 Aligned_cols=256 Identities=100% Similarity=1.512 Sum_probs=255.7 Q ss_pred CcccccceeeeecCCcchhhhhhcccccceEeeccccchHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccccccccc Q lcl|Aclame:pro 1 MATYDKNLFAKLENHTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKF 80 (256) Q Consensus 1 m~~~~~~lfa~le~~~gy~~~~~~~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlPRe~v~~D~v~~E~~~skF 80 (256) |+|||+|||||||+++||++||+++|||||||+|||++||+|+|+||+|||||||+|||||||++|++|+||+|+++||| T Consensus 1 m~~~d~~lfa~l~~~~gy~~~~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF 80 (256) T protein:vir:10 1 MATYDKNLFAKLENHTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKF 80 (256) T ss_pred CcccccceeeeecCCcchhhhhhhcccceeeeeeccCchhhHHHHHHHHHHHHcCceEEEechhhccccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cceeeeeeeehhhhccCCcchhhhhcCceeeeeEEEEEccchhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhh Q lcl|Aclame:pro 81 TKAWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (256) Q Consensus 81 ~~a~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~T~~IS~~rF~~~~~~~rP~EGDLIYfPm~n~lFEI~~VE~~~PFYQ 160 (256) ++||+|||||+||+||+|+++||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++|||| T Consensus 81 ~ka~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ 160 (256) T protein:vir:10 81 TKAWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (256) T ss_pred ccceeEEEEeehhhccCCccccceecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEEeccCCCchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cCCceEEEEEEEEEecCCCccCCCCcccccccCCcccceeeecccCCccceeccceeccccceeecccccccceeeEEcC Q lcl|Aclame:pro 161 LGQNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNN 240 (256) Q Consensus 161 ~Gk~yv~~l~ce~F~Ys~E~idtg~~~iD~i~~~~~~~l~l~~i~~~~g~~~~~~~~~~e~~~~~~e~~~~v~~~~vi~~ 240 (256) +||||||+|+|+||+||+|+|+||+++||+|+++++++|+|+|+++++|++|+|++++++++++++||++|++|++|||| T Consensus 161 ~Gkn~~~~l~ce~F~Ys~E~~~~~l~~~d~i~~~~~~eldl~pi~~ldG~~di~~~~~~e~~~~~~e~~~~v~~~~~in~ 240 (256) T protein:vir:10 161 LGQNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNN 240 (256) T ss_pred hCCCeEEEEEEEEEeeCCceecccCCCCccccCCccchhhhccccccccccccCccccccchhhhhccccccccceEecC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCcccCCCccccccC Q lcl|Aclame:pro 241 RGKSFESSPFDNDFMD 256 (256) Q Consensus 241 ~G~~~~~~pf~~~~~~ 256 (256) ||++++++||||+||| T Consensus 241 ~G~~~~~~pfd~~~~~ 256 (256) T protein:vir:10 241 RGKSFESSPFDNDFMD 256 (256) T ss_pred CCCCCcCCCccccccC Confidence 9999999999999999 No 3 >protein:vir:6890 Length: 254 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861866;genbank:gi:32453657;genbank:GeneID:1494292 Probab=100.00 E-value=1.4e-139 Score=781.81 Aligned_cols=254 Identities=89% Similarity=1.414 Sum_probs=252.4 Q ss_pred CcccccceeeeecCCcchhhhhhcccccceEeeccccchHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccccccccc Q lcl|Aclame:pro 1 MATYDKNLFAKLENHTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKF 80 (256) Q Consensus 1 m~~~~~~lfa~le~~~gy~~~~~~~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlPRe~v~~D~v~~E~~~skF 80 (256) |+|||+|||||||+++||++||+++|||||||+|||++||+|+|+||+|||||||+|||||||++|++|+||+|+++||| T Consensus 1 m~~~d~~lfa~le~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF 80 (254) T protein:vir:68 1 MATYDKNLFAKLENRGGYSQTNETEILNPFVNFNNYENSQTLADVLVAESIQMRGIECFYVPREYVAVDLIFGEDLKNKF 80 (254) T ss_pred CcccccceeeeecCCcchhhhhhccccceeEEeeccCchhHHHHHHHHHHHHHcCceEEEechhhhcccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cceeeeeeeehhhhccCCcchhhhhcCceeeeeEEEEEccchhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhh Q lcl|Aclame:pro 81 TKAWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (256) Q Consensus 81 ~~a~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~T~~IS~~rF~~~~~~~rP~EGDLIYfPm~n~lFEI~~VE~~~PFYQ 160 (256) ++||+|||||+||+||+|+++||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++|||| T Consensus 81 ~ka~~ieaYl~s~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ 160 (254) T protein:vir:68 81 TKAWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPGLFKHQVNNQEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (254) T ss_pred ccceeEEEeeehhhccCCcccchhhcCceecceEEEEEcCchhhhhcCCCCCccccEEEEcCCCceEEEeccCCCCchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cCCceEEEEEEEEEecCCCccCCCCcccccccCCcccceeeecccCCccceeccceeccccceeecccccccceeeEEcC Q lcl|Aclame:pro 161 LGQNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNN 240 (256) Q Consensus 161 ~Gk~yv~~l~ce~F~Ys~E~idtg~~~iD~i~~~~~~~l~l~~i~~~~g~~~~~~~~~~e~~~~~~e~~~~v~~~~vi~~ 240 (256) +||||||+|+|+||+||+|+|+||+++||+|+.++..+|+|+||++++|++|+++++++|+++|++||++|++|++|||+ T Consensus 161 ~GKn~~~~l~ce~F~Ys~E~idt~i~~id~I~~~e~~~ldl~~i~~ldG~~di~~~~~~E~~~~~~e~~~f~e~~~~vn~ 240 (254) T protein:vir:68 161 VGKNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSDLELNPVRNLDGIHDINIDEYSEVEQINSEASEYVEPYVVVNN 240 (254) T ss_pred hCCceEEEEEEEEEeeCCccccCCCcccCCccCcccCCcchhhHhhhcchhhccccchhhHHHHHhhhhhhcccceeecC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCcccCCCccccccC Q lcl|Aclame:pro 241 RGKSFESSPFDNDFMD 256 (256) Q Consensus 241 ~G~~~~~~pf~~~~~~ 256 (256) +|++ .+||||+||+ T Consensus 241 ~g~~--~~pf~~~~~~ 254 (254) T protein:vir:68 241 RGRQ--NSPFDDGFMN 254 (254) T ss_pred CCCC--CCcccccccC Confidence 9985 6899999999 No 4 >protein:vir:107937 Length: 257 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595290;genbank:gi:161622596;genbank:GeneID:5783656 Probab=100.00 E-value=1.7e-137 Score=770.41 Aligned_cols=256 Identities=69% Similarity=1.195 Sum_probs=255.4 Q ss_pred CcccccceeeeecCCcchhhhhhcccccceEeeccccchHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccccccccc Q lcl|Aclame:pro 1 MATYDKNLFAKLENHTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKF 80 (256) Q Consensus 1 m~~~~~~lfa~le~~~gy~~~~~~~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlPRe~v~~D~v~~E~~~skF 80 (256) |+|||+|||||||+++||++||+++|||||||+|||.+||+|+|+||+|||||||+|||||||++|++|+||+|+++||| T Consensus 1 m~~~d~~lfa~le~~~gy~~t~~~~~lnPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF 80 (257) T protein:vir:10 1 MATFDSSLFAKLENNTGYANTNETEIMNPFVNFYRHENTQTLADALVAESIQMRGIELYYIPREYVNPDQLFGEDLQNKF 80 (257) T ss_pred CcccccceeeeecCCcchhhhhhhccccceeecccCCchhHHHHHHHHHHHHHcCceEEEcchhhhcccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cceeeeeeeehhhhccCCcchhhhhcCceeeeeEEEEEccchhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhh Q lcl|Aclame:pro 81 TKAWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (256) Q Consensus 81 ~~a~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~T~~IS~~rF~~~~~~~rP~EGDLIYfPm~n~lFEI~~VE~~~PFYQ 160 (256) ++||+|||||+||+||+|+++||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++|||| T Consensus 81 ~ka~~ieaYl~s~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ 160 (257) T protein:vir:10 81 TKAWKFAGYLDSFEGYSGDNTYFSKFGMMVNDEVTITINPNLFKHQCNGTEPVSGDLIYFPMDNSLFEINWVQPYDPFYQ 160 (257) T ss_pred ccceeEEEeeehhhccCCCcceeeecCceecceEEEEEccchhhhhccCCCCccccEEEEcCCCceEEEecccCCCchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cCCceEEEEEEEEEecCCCccCCCCcccccccCCcccceeeecccCCccceeccceeccccceeecccccccceeeEEcC Q lcl|Aclame:pro 161 LGQNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNN 240 (256) Q Consensus 161 ~Gk~yv~~l~ce~F~Ys~E~idtg~~~iD~i~~~~~~~l~l~~i~~~~g~~~~~~~~~~e~~~~~~e~~~~v~~~~vi~~ 240 (256) +||||||+|+|+||+||+|+|.|++++++++.+++..+|+|+++++++|++|+|+++++|.+++++||++|++|++|||+ T Consensus 161 ~Gkn~~~~l~ce~F~Ys~E~l~pel~~n~~~~V~e~~eldl~~~~~ldG~~di~~~~~~E~~~~~~e~~~fi~p~~~~n~ 240 (257) T protein:vir:10 161 VGTNVQRRITATKFIYNGEELRPELQRNEGINIPEFSELDLMPVKNIDGLADISDIQYEEVNEINAEAAEFVHPYVVING 240 (257) T ss_pred hCCceEEEEEEEEeeeCCcccccccCCcccCCCCCccchhhhhhhhccchhhcCCchhhhHHHHHHhhhhhhccccccCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCcccCCCccccccC Q lcl|Aclame:pro 241 RGKSFESSPFDNDFMD 256 (256) Q Consensus 241 ~G~~~~~~pf~~~~~~ 256 (256) +|++...+||||+||+ T Consensus 241 ~g~~~~~~pf~~~~~~ 256 (257) T protein:vir:10 241 RGEDAPPTAFDDAFLD 256 (257) T ss_pred CCCCCCCCcccchhcc Confidence 9999999999999999 No 5 >protein:vir:98258 Length: 248 # NCBI annotation: gp14 head completion # Family: family:all:1104 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239191;genbank:gi:66391666;genbank:GeneID:3416360 Probab=100.00 E-value=2.4e-135 Score=758.59 Aligned_cols=248 Identities=52% Similarity=0.948 Sum_probs=247.2 Q ss_pred CcccccceeeeecCCcchhhhhhcccccceEeeccccchHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccccccccc Q lcl|Aclame:pro 1 MATYDKNLFAKLENHTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKF 80 (256) Q Consensus 1 m~~~~~~lfa~le~~~gy~~~~~~~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlPRe~v~~D~v~~E~~~skF 80 (256) |+|||+|||||||+++||++||++++||||||+|+|++||+|+|+||+|||||||+|||||||++|++|+||||+++||| T Consensus 1 m~~~d~~lfa~l~~~~gy~~t~~~~~lnPYfN~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF 80 (248) T protein:vir:98 1 MQNWDESLFAQLSTGEGVDRNLKDQVTNPYVNWYKYNPTQQLHDSLTAESIQMKSPDMYYVRREFVNIDKILGEDRESKF 80 (248) T ss_pred CcccccceeeEecCCcchhhhhhcccccceeeccccCchhHHHHHHHHHHHHHcCceEEEcchhhhcccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cceeeeeeeehhhhccCCcchhhhhcCceeeeeEEEEEccchhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhh Q lcl|Aclame:pro 81 TKAWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (256) Q Consensus 81 ~~a~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~T~~IS~~rF~~~~~~~rP~EGDLIYfPm~n~lFEI~~VE~~~PFYQ 160 (256) ++||+|||||+||+||+|+||||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+|||| +|||| T Consensus 81 ~ka~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~-dPFYQ 159 (248) T protein:vir:98 81 TKSWKIAAYIESYANYEGQRDFFSKFGLSSNDEMTLVLNPRLFAHQTDGGIPVLGDLVYFPMDNSLFEITWVEA-DPFYQ 159 (248) T ss_pred ccceeEEEeeehhhccCCccceeeecCceecceEEEEEccchhhhcCCCCCCccccEEEEcCCCceEEEEecCC-Cchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 69999 Q ss_pred cCCceEEEEEEEEEecCCCccCCCCcccccccCCcccceeeecccCCccceeccceeccccceeecccccccceeeEEcC Q lcl|Aclame:pro 161 LGQNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNN 240 (256) Q Consensus 161 ~Gk~yv~~l~ce~F~Ys~E~idtg~~~iD~i~~~~~~~l~l~~i~~~~g~~~~~~~~~~e~~~~~~e~~~~v~~~~vi~~ 240 (256) +||||||+|+|+||+||+|+|+||+++||+|+++++++|||+|+++++|++|+|+++++|.+++++||++|++|++|||+ T Consensus 160 ~Gkn~~~~l~ce~F~Ys~E~~~~~l~~~d~i~~~~~~~iDl~~i~~ldg~~Di~~~~~~e~~~~~~E~~~~~~~~~vin~ 239 (248) T protein:vir:98 160 FGDRPQRKINLAKFIYTGEELAPELQRNEGIHIEPDAELDLEPIRNLDGLADINIEQYEEDKEFEREGDEFIESFDVVNG 239 (248) T ss_pred hCCCeEEEEEEEEeeeCCccccccCCCccccCCCCCcchhHHHhhcCccccccCcccccchhhhhhhhhhhhcccceecC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCcccCCC Q lcl|Aclame:pro 241 RGKSFESSP 249 (256) Q Consensus 241 ~G~~~~~~p 249 (256) +|+|++++| T Consensus 240 ~g~~~~~~~ 248 (248) T protein:vir:98 240 RGSPFATLP 248 (248) T ss_pred cCCCccCCC Confidence 999999999 No 6 >protein:vir:80995 Length: 246 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469495;genbank:gi:157311452;genbank:GeneID:5602161 Probab=100.00 E-value=3.4e-132 Score=741.31 Aligned_cols=246 Identities=62% Similarity=1.127 Sum_probs=243.1 Q ss_pred ccccceeeeecCCcchhhhhhcccccceEeeccccchHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccccccccccc Q lcl|Aclame:pro 3 TYDKNLFAKLENHTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKFTK 82 (256) Q Consensus 3 ~~~~~lfa~le~~~gy~~~~~~~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlPRe~v~~D~v~~E~~~skF~~ 82 (256) -||+|||||||+++||++|++++|+|||||+|||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 1 ~~~~~lfa~l~~~~gy~~~~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 80 (246) T protein:vir:80 1 MFDSTLFARLESQKDYENTRQTEILNPYVNFNSHTNTQTLADIMVAESIQMRGVEMYYIPREFVKPDMIFGEDVQSKFTK 80 (246) T ss_pred CCcccceeeecCCcchhhhcccccccceeeeCCCCchhhHHHHHHHHHHHHcCceEEEechhhhcccccccccccccccc Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eeeeeeeehhhhccCCcchhhhhcCceeeeeEEEEEccchhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|Aclame:pro 83 AWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQLG 162 (256) Q Consensus 83 a~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~T~~IS~~rF~~~~~~~rP~EGDLIYfPm~n~lFEI~~VE~~~PFYQ~G 162 (256) ||+|||||+||+||+|+|+||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~s~egy~G~gd~~SKFG~~v~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (246) T protein:vir:80 81 AWKFAAYINSFDGYEGAGNFFQSFGYTANDELTITINPNLFKHQVDNKEPKSGDLFYIPMSNDLFEISYVEPYQPFFQAG 160 (246) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEccchHhhhhCCCCCccccEEEEcCCCceEEEecccCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCCccCCCCcccccccCCcccceeeecccCCccceeccceeccccceeecccccccceeeEEcCCC Q lcl|Aclame:pro 163 QNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNNRG 242 (256) Q Consensus 163 k~yv~~l~ce~F~Ys~E~idtg~~~iD~i~~~~~~~l~l~~i~~~~g~~~~~~~~~~e~~~~~~e~~~~v~~~~vi~~~G 242 (256) |||||+|+|+||+||+|+|+||+++||+|++++.++|||+|+++++|++|+++++++|.+++.+||++|++|++|||++| T Consensus 161 Kn~v~~l~ce~F~Ys~E~~~t~i~~~d~I~~de~~~ldl~~i~nldg~~Din~~~~~e~~~~~~e~~~f~~~~~~~~~~g 240 (246) T protein:vir:80 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPINGKG 240 (246) T ss_pred CCeEEEEEEEEEeecCcccccCCCCccccCCCCcccccHHHHhhcccccccCcccchhhhhhhcchhhhcccceeecCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CcccCCCcccc Q lcl|Aclame:pro 243 KSFESSPFDND 253 (256) Q Consensus 243 ~~~~~~pf~~~ 253 (256) +||||- T Consensus 241 -----spf~~~ 246 (246) T protein:vir:80 241 -----SPFADF 246 (246) T ss_pred -----CccccC Confidence 677654 No 7 >protein:vir:6590 Length: 246 # NCBI annotation: neck protein # Family: family:all:1104 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891721;genbank:gi:33620667;genbank:GeneID:1725307 Probab=100.00 E-value=4.3e-132 Score=740.78 Aligned_cols=246 Identities=62% Similarity=1.143 Sum_probs=243.1 Q ss_pred ccccceeeeecCCcchhhhhhcccccceEeeccccchHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccccccccccc Q lcl|Aclame:pro 3 TYDKNLFAKLENHTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKFTK 82 (256) Q Consensus 3 ~~~~~lfa~le~~~gy~~~~~~~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlPRe~v~~D~v~~E~~~skF~~ 82 (256) -||+|||||||+++||++|++++|||||||+||+.+||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 1 ~~~~~lfa~l~~~~gy~~~~~~~~lNPYfN~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 80 (246) T protein:vir:65 1 MFNNTLFARLESQKDYENTRQTEILNPYVNFHKYTNTQTLADVMVAEAIQMRGVELYYIPREFVKPDMIFGEDVQSKFTK 80 (246) T ss_pred CCcccceeeecCCcchhhhcccccccceeecCCCcchhhHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eeeeeeeehhhhccCCcchhhhhcCceeeeeEEEEEccchhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|Aclame:pro 83 AWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQLG 162 (256) Q Consensus 83 a~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~T~~IS~~rF~~~~~~~rP~EGDLIYfPm~n~lFEI~~VE~~~PFYQ~G 162 (256) ||+|||||+||+||+|+|+||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~~~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (246) T protein:vir:65 81 AWKFAAYINSFDGYEGAGNFFSSFGYQANDELTFTVNPNLFKHQVDDQEPKSGDLIYIPMSNDLFEINYVEPYQPFFQAG 160 (246) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhcCCCCCccccEEEEcCCCcEEEEecccCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCCccCCCCcccccccCCcccceeeecccCCccceeccceeccccceeecccccccceeeEEcCCC Q lcl|Aclame:pro 163 QNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNNRG 242 (256) Q Consensus 163 k~yv~~l~ce~F~Ys~E~idtg~~~iD~i~~~~~~~l~l~~i~~~~g~~~~~~~~~~e~~~~~~e~~~~v~~~~vi~~~G 242 (256) |||||+|+|+||+||+|+|+||+++||+|++++.++|||+|+++++|++|+++++++|.+++.+||++|++|++|||++| T Consensus 161 Kn~v~~l~ce~F~Ys~E~~~~~i~~~d~I~~de~~~ldl~~i~~ldg~~Din~~~~~e~~~~~~e~~~f~~~~~~~~~~g 240 (246) T protein:vir:65 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPINGKG 240 (246) T ss_pred CCeEEEEEEEEEeecCcccccCCCCccccCCCCcccccHHHHhhcccccccCccchhhhhhhhcchhhhcccceeecCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CcccCCCcccc Q lcl|Aclame:pro 243 KSFESSPFDND 253 (256) Q Consensus 243 ~~~~~~pf~~~ 253 (256) +||||- T Consensus 241 -----spf~~~ 246 (246) T protein:vir:65 241 -----SPFADF 246 (246) T ss_pred -----CccccC Confidence 677654 No 8 >protein:vir:101154 Length: 252 # NCBI annotation: neck protein # Family: family:all:1104 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932505;genbank:gi:37651631;genbank:GeneID:2610647 Probab=100.00 E-value=4.8e-131 Score=735.03 Aligned_cols=252 Identities=57% Similarity=0.956 Sum_probs=247.3 Q ss_pred ccccceeeeecCCcchhhhhhcccccceEeeccccchHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccccccccccc Q lcl|Aclame:pro 3 TYDKNLFAKLENHTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKFTK 82 (256) Q Consensus 3 ~~~~~lfa~le~~~gy~~~~~~~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlPRe~v~~D~v~~E~~~skF~~ 82 (256) -+|+|||||||+++||++||+++|||||||++||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 1 m~d~~lfa~le~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~~Ed~~SkF~k 80 (252) T protein:vir:10 1 MMDKSLFATLENRGGYMRTNEKNILNPYVKFNKHEGTQALQDTLVAESIQMRGIEFYYLEREFTDLDLLFGEDVNSRFEK 80 (252) T ss_pred CCCccceeEecCCcchhhhhhhccccceeeecCccchhHHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eeeeeeeehhhhccCCcchhhhhcCceeeeeEEEEEccchhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|Aclame:pro 83 AWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQLG 162 (256) Q Consensus 83 a~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~T~~IS~~rF~~~~~~~rP~EGDLIYfPm~n~lFEI~~VE~~~PFYQ~G 162 (256) ||+|||||+||+||+|+|+||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~s~egy~G~gd~~SKFG~~~~DEvt~~Is~~rF~~qv~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (252) T protein:vir:10 81 AWKFAAWLNSFESYEGQQSFFSKFGHTQNDEIRISINPGLFKYQVNGKEPALGDLIYMPMDNSLFEITWVEPYSPFYQNG 160 (252) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEeccCCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCCccCCCCcccccccCCcccceeeecccCCccceeccceeccccceeecccccccceeeEEcCCC Q lcl|Aclame:pro 163 QNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNNRG 242 (256) Q Consensus 163 k~yv~~l~ce~F~Ys~E~idtg~~~iD~i~~~~~~~l~l~~i~~~~g~~~~~~~~~~e~~~~~~e~~~~v~~~~vi~~~G 242 (256) |||||+|+|+||+||+|+|+|++++||+|+ +..+.|||++|++++|++|+++++++|++++++||++|++|++|||++| T Consensus 161 kn~~~~l~ce~F~Ys~E~idt~~~~id~Ie-~~~s~ldl~~i~~ldG~~Di~~~~~~e~~~~~~e~~~~~e~~~~i~~~~ 239 (252) T protein:vir:10 161 KNPIRVIVAQKFIYSGEKITPVVQEKPEIE-DMYNGLDLAPLLNLDGMIDQKIDQFAENIAVQQKVKQYAEPFDPISTNS 239 (252) T ss_pred CCeEEEEEEEEEeeCCceecCcccccCccc-hhhhccchHHHhhcCCeeccccccchhhHHHHHhhhhhhccceeecCCC Confidence 999999999999999999999999999999 8899999999999999999999999999999999999999999999999 Q ss_pred CcccCCCcccccc Q lcl|Aclame:pro 243 KSFESSPFDNDFM 255 (256) Q Consensus 243 ~~~~~~pf~~~~~ 255 (256) .+...+||..-=- T Consensus 240 ~~~~~~pf~~~~~ 252 (252) T protein:vir:10 240 FGNFDSPFGKHEA 252 (252) T ss_pred CCCcCCcccccCC Confidence 9988899965333 No 9 >protein:vir:101800 Length: 252 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238877;genbank:gi:66391952;genbank:GeneID:3416627 Probab=100.00 E-value=4.8e-131 Score=735.03 Aligned_cols=252 Identities=57% Similarity=0.956 Sum_probs=247.3 Q ss_pred ccccceeeeecCCcchhhhhhcccccceEeeccccchHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccccccccccc Q lcl|Aclame:pro 3 TYDKNLFAKLENHTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKFTK 82 (256) Q Consensus 3 ~~~~~lfa~le~~~gy~~~~~~~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlPRe~v~~D~v~~E~~~skF~~ 82 (256) -+|+|||||||+++||++||+++|||||||++||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 1 m~d~~lfa~le~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~~Ed~~SkF~k 80 (252) T protein:vir:10 1 MMDKSLFATLENRGGYMRTNEKNILNPYVKFNKHEGTQALQDTLVAESIQMRGIEFYYLEREFTDLDLLFGEDVNSRFEK 80 (252) T ss_pred CCCccceeEecCCcchhhhhhhccccceeeecCccchhHHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eeeeeeeehhhhccCCcchhhhhcCceeeeeEEEEEccchhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|Aclame:pro 83 AWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQLG 162 (256) Q Consensus 83 a~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~T~~IS~~rF~~~~~~~rP~EGDLIYfPm~n~lFEI~~VE~~~PFYQ~G 162 (256) ||+|||||+||+||+|+|+||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~s~egy~G~gd~~SKFG~~~~DEvt~~Is~~rF~~qv~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (252) T protein:vir:10 81 AWKFAAWLNSFESYEGQQSFFSKFGHTQNDEIRISINPGLFKYQVNGKEPALGDLIYMPMDNSLFEITWVEPYSPFYQNG 160 (252) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEeccCCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCCccCCCCcccccccCCcccceeeecccCCccceeccceeccccceeecccccccceeeEEcCCC Q lcl|Aclame:pro 163 QNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNNRG 242 (256) Q Consensus 163 k~yv~~l~ce~F~Ys~E~idtg~~~iD~i~~~~~~~l~l~~i~~~~g~~~~~~~~~~e~~~~~~e~~~~v~~~~vi~~~G 242 (256) |||||+|+|+||+||+|+|+|++++||+|+ +..+.|||++|++++|++|+++++++|++++++||++|++|++|||++| T Consensus 161 kn~~~~l~ce~F~Ys~E~idt~~~~id~Ie-~~~s~ldl~~i~~ldG~~Di~~~~~~e~~~~~~e~~~~~e~~~~i~~~~ 239 (252) T protein:vir:10 161 KNPIRVIVAQKFIYSGEKITPVVQEKPEIE-DMYNGLDLAPLLNLDGMIDQKIDQFAENIAVQQKVKQYAEPFDPISTNS 239 (252) T ss_pred CCeEEEEEEEEEeeCCceecCcccccCccc-hhhhccchHHHhhcCCeeccccccchhhHHHHHhhhhhhccceeecCCC Confidence 999999999999999999999999999999 8899999999999999999999999999999999999999999999999 Q ss_pred CcccCCCcccccc Q lcl|Aclame:pro 243 KSFESSPFDNDFM 255 (256) Q Consensus 243 ~~~~~~pf~~~~~ 255 (256) .+...+||..-=- T Consensus 240 ~~~~~~pf~~~~~ 252 (252) T protein:vir:10 240 FGNFDSPFGKHEA 252 (252) T ss_pred CCCcCCcccccCC Confidence 9988899965333 No 10 >protein:vir:100535 Length: 253 # NCBI annotation: gp14 head completion protein # Family: family:all:1104 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656376;genbank:gi:109290127;genbank:GeneID:4156513 Probab=100.00 E-value=1e-130 Score=733.24 Aligned_cols=253 Identities=58% Similarity=0.978 Sum_probs=247.0 Q ss_pred ccccceeeeecCCcchhhhhhcccccceEeeccccchHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccccccccccc Q lcl|Aclame:pro 3 TYDKNLFAKLENHTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKFTK 82 (256) Q Consensus 3 ~~~~~lfa~le~~~gy~~~~~~~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlPRe~v~~D~v~~E~~~skF~~ 82 (256) -+|+|||||||+++||++||+++|||||||+|||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 1 ~~~~~lfa~l~~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 80 (253) T protein:vir:10 1 MMDKSLFATLENRSGYQQTNEQNILNPYVKFNRYEGSQALHDTLVAESIQMRGLEFYYLEREYTNLDLLFGEDPNSRFEK 80 (253) T ss_pred CcCccceeEecCCcchhhhhhhccccceeeccccCchhHHHHHHHHHHHHHcCceEEEcchhhccccCcccccccccccc Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eeeeeeeehhhhccCCcchhhhhcCceeeeeEEEEEccchhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|Aclame:pro 83 AWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQLG 162 (256) Q Consensus 83 a~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~T~~IS~~rF~~~~~~~rP~EGDLIYfPm~n~lFEI~~VE~~~PFYQ~G 162 (256) ||+|||||+||+||+|++|||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~~~egy~G~gd~~SKFG~~v~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (253) T protein:vir:10 81 AWKFAAWLNSFESYEGQQSFFSKFGHQQNDEVRISINPGLFKYQVNGKEPKLGDLIYMPMDNSLFEITWVEPYTPFYQMG 160 (253) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEeccCCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCCccCCCCcccccccCCcccceeeecccCCccceeccceeccccceeecccccccceeeEEcCCC Q lcl|Aclame:pro 163 QNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNNRG 242 (256) Q Consensus 163 k~yv~~l~ce~F~Ys~E~idtg~~~iD~i~~~~~~~l~l~~i~~~~g~~~~~~~~~~e~~~~~~e~~~~v~~~~vi~~~G 242 (256) |||||+|+|+||+||+|+|+||+++||+|+ +.+++|+|+++.+++|++|+++.+++|++++++||++||+|++||+++| T Consensus 161 kn~~~~l~ce~F~Ys~E~i~tgi~~id~Ie-~~~~~ldl~~i~~l~G~~Di~~~~~~e~~~~~~e~~~~v~~~~~~~~~~ 239 (253) T protein:vir:10 161 KNPIRVIVAQKFIYSGEKLAPQFQEKPEIE-DQYNGLDLEPILNLDGFIDQKINEFGENVQAQNEARPFVEPFDPISTNP 239 (253) T ss_pred CceEEEEEEEEEecCCccccccCccccccc-chhhhhhhhhhhcCCCccccccccccccchhhhccccccccceeccCCC Confidence 999999999999999999999999999999 6778999999999999999999999999999999999999999999999 Q ss_pred CcccCCCccccccC Q lcl|Aclame:pro 243 KSFESSPFDNDFMD 256 (256) Q Consensus 243 ~~~~~~pf~~~~~~ 256 (256) ....++||...=-. T Consensus 240 ~~g~~spf~~~~~~ 253 (253) T protein:vir:10 240 VNSFNSPFGRHEGQ 253 (253) T ss_pred CccccCcccccCCC Confidence 98888999653222 No 11 >protein:vir:106285 Length: 262 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944101;genbank:gi:38640145;genbank:GeneID:2658033 Probab=100.00 E-value=1.5e-129 Score=726.92 Aligned_cols=251 Identities=48% Similarity=0.831 Sum_probs=243.3 Q ss_pred CcccccceeeeecCCcchhhhhhcccccceEeeccccchHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccccccccc Q lcl|Aclame:pro 1 MATYDKNLFAKLENHTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKF 80 (256) Q Consensus 1 m~~~~~~lfa~le~~~gy~~~~~~~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlPRe~v~~D~v~~E~~~skF 80 (256) |+|||+|||||||+++||++|++++|+|||||+++|++||+|+|+||+|||||||+|||||||++|++|+||||+++||| T Consensus 1 m~~~d~~lfa~le~~~gy~~~~~~~vlNPYfN~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~gEd~~SkF 80 (262) T protein:vir:10 1 MFARNQSMFAQLETGAGYNKTYQTNVLNPYVNKHEYEPTLSLHEMLVAESIQMTGVEMYYIRREFVNFDRIFGEDMQSKF 80 (262) T ss_pred CcccccceeeEecCCCcccCcchhccccceeccCCcCchhhHHHHHHHHHHHHcCceEEEcchhhhcccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cceeeeeeeehhhhccCCcchhhhhcCceeeeeEEEEEccchhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhh Q lcl|Aclame:pro 81 TKAWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (256) Q Consensus 81 ~~a~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~T~~IS~~rF~~~~~~~rP~EGDLIYfPm~n~lFEI~~VE~~~PFYQ 160 (256) ++||+|||||+||+||+|+||||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++|||| T Consensus 81 ~ka~~ieaYl~s~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPl~nsLFEI~~VE~~~PFYQ 160 (262) T protein:vir:10 81 KKTYKVAMYLESFDEYSGQRDFFSKFGMQVNDEITMSVSPKLFETQADGDRVKEGDLIYFPLNNSLFEVTWVEPSSPVVK 160 (262) T ss_pred ccceeEEEeeehhhccCCccceeeecCceecceEEEEEccchhhhhhcCCCCccccEEEEcCCCceEEEeeccCCCchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cCCceEEEEEEEEEecCCCccCCCCcccccccCCcccceeeecccCCccceeccceeccccceeecccccccceeeEEcC Q lcl|Aclame:pro 161 LGQNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNN 240 (256) Q Consensus 161 ~Gk~yv~~l~ce~F~Ys~E~idtg~~~iD~i~~~~~~~l~l~~i~~~~g~~~~~~~~~~e~~~~~~e~~~~v~~~~vi~~ 240 (256) +||||||+|+|+||+||+|+|+|++++||+|.... .+|.+++++||++|+++++++|.+.+++|++.||+++++||+ T Consensus 161 ~Gkn~~~~l~ce~F~Ys~E~i~~~i~~id~i~~e~---~~l~~i~~lDg~~di~~~q~~e~~~~~~e~~~fv~~~d~v~~ 237 (262) T protein:vir:10 161 REQLAKYKVTAQKFIYSGEEIKPEFDPNRYVLGED---DPLSQIKALDGRADISLDEFAEDDAFNEEAEDFVVEFDNIIG 237 (262) T ss_pred hCCceEEEEEEEEEeeCCccccccCcccccccccc---ccccccccccceeecccccccchhHHhhhhhhhcchhcccCC Confidence 99999999999999999999999999999997542 369999999999999999999999999999999999999999 Q ss_pred CCCcc---------cCCCccc--cc Q lcl|Aclame:pro 241 RGKSF---------ESSPFDN--DF 254 (256) Q Consensus 241 ~G~~~---------~~~pf~~--~~ 254 (256) +|+++ ..+|||| .| T Consensus 238 ~gsp~~~~~~~~~~~~~~fdd~~~~ 262 (262) T protein:vir:10 238 NGTPIAEHKPTKPAPVSAFDDLESF 262 (262) T ss_pred CCCcccccCCCCCCCCChhhhhhcC Confidence 99775 4578886 24 No 12 >protein:vir:5658 Length: 278 # NCBI annotation: gp14 # Family: family:all:1104 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899597;genbank:gi:34419584;genbank:GeneID:2545699 Probab=100.00 E-value=2.5e-126 Score=709.20 Aligned_cols=256 Identities=44% Similarity=0.764 Sum_probs=238.1 Q ss_pred Cccccc---ceeeeecCCcchhhhhhcccccceEeeccccchHHHHHHHHHHHHHhcCeeEEEeeeeecccccccccccc Q lcl|Aclame:pro 1 MATYDK---NLFAKLENHTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLK 77 (256) Q Consensus 1 m~~~~~---~lfa~le~~~gy~~~~~~~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlPRe~v~~D~v~~E~~~ 77 (256) |+|||+ |||||||+++||++|++++|+|||||+|||.+||+|+|+||+|||||||+|||||||++|++|+||+|+++ T Consensus 1 m~~~d~~~~~lfa~l~~~~gy~~~~~~~~~NpYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~ 80 (278) T protein:vir:56 1 MGAYDTNTGGMFAKLESQKGYDQIYNNHLVNPYFNWVNHTNEQNLTDMLVAESIINRGVECVYLRREMEKVDLVFGEDPM 80 (278) T ss_pred CccccccCceEEEEecCCcccchhcccccccceeeccCCCchhHHHHHHHHHHHHHcCceEEEcchhhhccccccccccc Confidence 999999 69999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccceeeeeeeehhhhccCCcchhhhhcCceeeeeEEEEEccchhhhhhcCCCCccccEEEecCCCceEEEEeeccCCc Q lcl|Aclame:pro 78 NKFTKAWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDP 157 (256) Q Consensus 78 skF~~a~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~T~~IS~~rF~~~~~~~rP~EGDLIYfPm~n~lFEI~~VE~~~P 157 (256) |||++||+|||||+||+||+|+++||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++| T Consensus 81 skF~ka~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~~~P 160 (278) T protein:vir:56 81 SKFTQNFRMSLYVESFEGWDGDGDWYSKFGFQVNDEMNVCINPKLFAQQGDGKQPLMGDLIYFPLANSLFEISWIEREDP 160 (278) T ss_pred cccccceeEEEEeehhhccCCCceeeeecCceecceEEEEEccchhhhcCCCCCCccccEEEEcCCCcEEEEEccCCCCc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhhcCCceEEEEEEEEEecCCCccCCCCcc--cccccC-Ccccc-----eeeecccCCccceeccceeccccceeecccc Q lcl|Aclame:pro 158 FYQLGQNAIRKITAGKFIYSGEEINPVLQK--NEGINI-PEFSE-----LELNPVRNLNGIHDINIDQYAEVDQINSEAK 229 (256) Q Consensus 158 FYQ~Gk~yv~~l~ce~F~Ys~E~idtg~~~--iD~i~~-~~~~~-----l~l~~i~~~~g~~~~~~~~~~e~~~~~~e~~ 229 (256) |||+||+|||+|+|+||+||+|+|+||.++ +|.|+. .++.+ |++.++.+++|++++|++++++.+++++||+ T Consensus 161 FYQ~Gk~~~~~l~ce~F~Ys~E~~dtg~pe~~~d~i~~i~ef~e~~~~~ld~~~~~~l~G~~di~~~~~~e~~~~~~e~~ 240 (278) T protein:vir:56 161 WYMNGVLPMRKMKMTKFVYSGEEINLEKPEAVIDSIDDILNFGEDTDEMIDIDKINALDGRWDIGIEQGAEITQIEDEVD 240 (278) T ss_pred hhhhCCceEEEEEEEEeeecCceecccCCccccccccchhhcccchhhcccccccccccchhcccchhhhhhhhhhhccc Confidence 999999999999999999999999999666 555532 23344 9999999999999999999999999999999 Q ss_pred cccceeeEEcCCCCcccCCCccccccC Q lcl|Aclame:pro 230 EYVEPYVVVNNRGKSFESSPFDNDFMD 256 (256) Q Consensus 230 ~~v~~~~vi~~~G~~~~~~pf~~~~~~ 256 (256) +|++|++|++++|...+..|.-..+-. T Consensus 241 ~f~~~~~v~~~~~~~~~t~~~n~~~g~ 267 (278) T protein:vir:56 241 KFYESEQVVPSGSDVQPTDPRNATIGF 267 (278) T ss_pred eeeecCceecCCCCccccCcccccCCC Confidence 999999999998865443333322210 No 13 >protein:vir:104476 Length: 308 # NCBI annotation: gp14 # Family: family:all:1104 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214650;genbank:gi:61806291;genbank:GeneID:3294531 Probab=100.00 E-value=6e-116 Score=652.28 Aligned_cols=236 Identities=31% Similarity=0.523 Sum_probs=217.5 Q ss_pred hhhhcccc----------cceEeeccccchHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccccccccccceeeeeee Q lcl|Aclame:pro 20 QTNETEIL----------NPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKFTKAWKFAAY 89 (256) Q Consensus 20 ~~~~~~~~----------NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlPRe~v~~D~v~~E~~~skF~~a~~ieaY 89 (256) -+++++.+ |||||+|||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++||+|||| T Consensus 1 ~~~~~~~~~py~~~~~~~~~~~n~~~~~~eQ~L~e~LV~EsIqm~G~dvyYlpRe~v~~D~i~~Ed~~skF~~a~~ieaY 80 (308) T protein:vir:10 1 MAIQNSPAQDYVQSDYSNAGRLKANASSQEQKFIENLVVESIEIYGQDIYYVPRTIVNRDSVFEEDSDGKFESAKAIRAY 80 (308) T ss_pred CccccCCCCCcccccccccceEEEeccCchhHHHHHHHHHHHHhcCceEEEechhhcccccccccccccccccceeEEEE Confidence 34444444 55569999999999999999999999999999999999999999999999999999999999 Q ss_pred ehhhhccCCcchhhhhcCceeeeeEEEEEccchhhhhhcCC-------CCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|Aclame:pro 90 LNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGK-------EPKEGDLIYFPMDNSLFEINWVEPYDPFYQLG 162 (256) Q Consensus 90 l~n~eGy~g~gd~~SKFG~~~~DE~T~~IS~~rF~~~~~~~-------rP~EGDLIYfPm~n~lFEI~~VE~~~PFYQ~G 162 (256) |+||+||+|+++||||||||++|||||+|||+||++++++. ||+|||||||||+|+|||||||||++||||+| T Consensus 81 ~~~~egy~g~~~~~SKFG~~~~DE~t~~is~~rF~~~v~~~~~~~~~~rP~EGDLIYfPl~~~lFEI~~VE~~~PFyQ~G 160 (308) T protein:vir:10 81 VNNVEGWEGQGELLSKFGIRIEDKTTFIFSREKFKEHVDDSVTLNVEGRPNEGDLIWFPITKHLFEIKFVEVERPFYQLG 160 (308) T ss_pred eechhccCCCcceeeecCceecceEEEEEccchhhhhcCCccccccCCCCccccEEEecCCCceEEEEcccCCCchhhhC Confidence 99999999999999999999999999999999999999984 99999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCCccCCCCcccccccCCcccceeeecccCCccceeccceeccccceeecccccc---cceeeEEc Q lcl|Aclame:pro 163 QNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEY---VEPYVVVN 239 (256) Q Consensus 163 k~yv~~l~ce~F~Ys~E~idtg~~~iD~i~~~~~~~l~l~~i~~~~g~~~~~~~~~~e~~~~~~e~~~~---v~~~~vi~ 239 (256) |||||+|+|+||+||+|+|+|||++||+|+++++++|+|+|+++++|++++|++++++++++++||+.| ++++.|+| T Consensus 161 k~~~~~l~ce~F~Ys~E~~~~~i~~iD~i~~~~~~~LdL~pIs~l~G~fdInE~v~gest~itAEv~~wds~v~~ItV~N 240 (308) T protein:vir:10 161 RNYVWECQCELFEYSDEEINTGITELDAIETAFANAITVGLVAGGTGTFTVGETITGGTSNVTAEVKSFDASTRTLIVIN 240 (308) T ss_pred CceEEEEEEEEEeeCCcccccCCccccccccccccceeeeeeccCCccccccceecccccceEEEEEEecCCceEEEEEe Confidence 999999999999999999999999999999999999999999999999999999999999999999998 88888888 Q ss_pred CCCCcccCCCc---------------cc-cccC Q lcl|Aclame:pro 240 NRGKSFESSPF---------------DN-DFMD 256 (256) Q Consensus 240 ~~G~~~~~~pf---------------~~-~~~~ 256 (256) ++|+. +++|= +. +.++ T Consensus 241 ~gGsf-tspptItGsts~a~~t~~s~~~~~nt~ 272 (308) T protein:vir:10 241 RSGTF-TVPETVTGGTSSASWTTATYNTIDNQN 272 (308) T ss_pred CCCce-eeCcEEEeccCCceeEEEeeeecccCC Confidence 88754 33331 11 1111 No 14 >protein:vir:106986 Length: 292 # NCBI annotation: neck protein gp14 # Family: family:all:1104 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195128;genbank:gi:58532905;uniprot:Q5GQV9;genbank:GeneID:3260483 Probab=100.00 E-value=2.5e-112 Score=632.44 Aligned_cols=231 Identities=27% Similarity=0.495 Sum_probs=218.8 Q ss_pred ccccceEe--eccccchHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccccccccccceeeeeeeehhhhccCCcchh Q lcl|Aclame:pro 25 EILNPYVN--FNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKFTKAWKFAAYLNSFEGYEGAKSF 102 (256) Q Consensus 25 ~~~NpYfn--~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlPRe~v~~D~v~~E~~~skF~~a~~ieaYl~n~eGy~g~gd~ 102 (256) --|||||| +|||.+||+|+|+||+|||||||+|||||||++|+ |.+|+|+++|||++||+|||||+||+||+|++|| T Consensus 1 m~~npyfn~~~~~~~~eQ~L~~~LV~Esiq~~G~dvyYlpRe~~~-d~~~~E~~~skF~~a~~ieaY~~~~eg~~g~~~~ 79 (292) T protein:vir:10 1 MPTSPYFPSYYSGYSGEQNLVQDLVDEQIKLFGTDIYYLPRTILR-DNTLDDVIYNKFERQFQVEMLLQNVEGFGSPSEF 79 (292) T ss_pred CCcCccccccccCcCchhHHHHHHHHHHHHhcCceEEEechhhhc-ccccccccccccccceeEEEEeechhccCCCcce Confidence 45899999 69999999999999999999999999999999999 9999999999999999999999999999999999 Q ss_pred hhhcCceeeeeEEEEEccchhhhhhcC------CCCccccEEEecCCCceEEEEeeccCCchhhcCCceEEEEEEEEEec Q lcl|Aclame:pro 103 FSNFGMQVQDEVTLSINPNLFKHQVNG------KEPKEGDLIYFPMDNSLFEINWVEPYDPFYQLGQNAIRKITAGKFIY 176 (256) Q Consensus 103 ~SKFG~~~~DE~T~~IS~~rF~~~~~~------~rP~EGDLIYfPm~n~lFEI~~VE~~~PFYQ~Gk~yv~~l~ce~F~Y 176 (256) |||||||++|||||+|||+||++++++ +||+|||||||||+|+||||+||||++||||+||||||+|+|+||+| T Consensus 80 ~sKFG~~~~De~t~~is~~~f~~~~~~~~~~~~~~P~eGDLIYfPl~~~lFEI~~ve~~~PfyQ~gk~~~~~l~~~~F~Y 159 (292) T protein:vir:10 80 ISKFGLRITDEVRFIVSQRRWDEEAVNYDLNVNGRPNEGDLLYFPLTQDIYEIKFVEREDPFYQLGKNYFYIMTAEIYEY 159 (292) T ss_pred eeecCceecceEEEEEccchhhhhcCcccccccCCCccccEEEEcCCCcEEEEEcccCCCchhhhCCceEEEEEEEEEee Confidence 999999999999999999999999998 89999999999999999999999999999999999999999999999 Q ss_pred CCCccCCCCcccccccCCcccceeeecccCCccceeccceeccccceeecccccc---cceeeEEcCCCCcccCCCcccc Q lcl|Aclame:pro 177 SGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEY---VEPYVVVNNRGKSFESSPFDND 253 (256) Q Consensus 177 s~E~idtg~~~iD~i~~~~~~~l~l~~i~~~~g~~~~~~~~~~e~~~~~~e~~~~---v~~~~vi~~~G~~~~~~pf~~~ 253 (256) |+|+|+||+++||+|+++..++|+|.|+.+++|+++++++++++.+++++||++| +++++|+|++|+..++.+=--. T Consensus 160 s~E~idtgl~eiD~i~~~~sseLdL~pi~~g~G~f~inE~vtge~sg~~AEv~sw~~~t~~L~V~n~~GsF~T~e~i~G~ 239 (292) T protein:vir:10 160 GSDNISTGVEEIDELETLFSSAIAIALSIGGTGDFDLGEIVTGGISGTEAEVKSWDSSSRILQVINRTGTFEEGESVTGN 239 (292) T ss_pred cCceecCCCCcccccccccccccceeecccCCccccCCceeeecccceEEEEEEccCCCceEEEEeCccccccCceeeEe Confidence 9999999999999999999999999999999999999999999999999999999 6699999999988655443211 Q ss_pred c---------cC Q lcl|Aclame:pro 254 F---------MD 256 (256) Q Consensus 254 ~---------~~ 256 (256) - .+ T Consensus 240 ~Sga~~~v~si~ 251 (292) T protein:vir:10 240 DSGSVWVVDSFD 251 (292) T ss_pred ecCCeEEeeEEE Confidence 1 11 No 15 >protein:vir:103005 Length: 390 # NCBI annotation: gp110 # Family: family:all:1104 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717777;genbank:gi:113200614;genbank:GeneID:4239009 Probab=100.00 E-value=1.2e-101 Score=573.90 Aligned_cols=247 Identities=27% Similarity=0.444 Sum_probs=221.5 Q ss_pred eeecCCcchhhhhhcccccceEeeccccchHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccccccccccceeeeeee Q lcl|Aclame:pro 10 AKLENHTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKFTKAWKFAAY 89 (256) Q Consensus 10 a~le~~~gy~~~~~~~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlPRe~v~~D~v~~E~~~skF~~a~~ieaY 89 (256) -...+.+||+++++.+++|||||+|||.+||+|+|+||+|||||||+||||||||+|++|+||+||++|||++||+|||| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~~~lv~e~i~~~g~~~~y~~r~~~~~d~~~~e~~~~~f~~~~~~~~y 80 (390) T protein:vir:10 1 MTYSNDPPNNCIQSDYTSSCRLNLNGSAQEQTFMENLIVESIELYGQNVYYLPRIYVNRDTILNEVETSRFEQALSVRAY 80 (390) T ss_pred CeecCCCcccceecceeeccEEEEeccCchhHHHHHHHHHHhHhcCceEEEechheeccccccccccccccccceEEEEE Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ehhhhccCCcchhhhhcCceeeeeEEEEEccchhhhhhcC-------CCCccccEEEecCCCceEEEEeeccCCchhhcC Q lcl|Aclame:pro 90 LNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNG-------KEPKEGDLIYFPMDNSLFEINWVEPYDPFYQLG 162 (256) Q Consensus 90 l~n~eGy~g~gd~~SKFG~~~~DE~T~~IS~~rF~~~~~~-------~rP~EGDLIYfPm~n~lFEI~~VE~~~PFYQ~G 162 (256) |+|||||+|++|||||||||++|||||+|||+||++++++ +||+|||||||||+|+||||+||||++||||+| T Consensus 81 ~~~~~~~~~~~~~~skfg~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~p~egdliy~p~~~~lfei~~ve~~~p~yq~G 160 (390) T protein:vir:10 81 VNNVEGWEGQGDLLSKFGVRIEDKTTFIFSRKKFTTAVDDNAVLNVEGRPNEGDLIWFPATRHLFEIKFVEAERPFYQLG 160 (390) T ss_pred eechhccCCccceeeecCceecceEEEEECCcchhhhhCCcccccccCCCCCCceEEecCCCCEEEEEecCCCCCceEcc Confidence 9999999999999999999999999999999999999997 499999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCCccCCCCcccccccCCcccceeeecccCCccceeccceeccccceeeccc--ccccceeeEEcC Q lcl|Aclame:pro 163 QNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEA--KEYVEPYVVVNN 240 (256) Q Consensus 163 k~yv~~l~ce~F~Ys~E~idtg~~~iD~i~~~~~~~l~l~~i~~~~g~~~~~~~~~~e~~~~~~e~--~~~v~~~~vi~~ 240 (256) |+|+|+|+|++|+||+|.+++++++++.+.......+.+....++.+.+............+.+.+ ..-.-.-++|++ T Consensus 161 ~nyt~~i~a~lf~ySge~iat~~seid~I~~~~~~~v~~~~~t~g~~~~t~~~~v~~~g~ga~~~a~v~~g~Vt~vtItn 240 (390) T protein:vir:10 161 KGYVWECQCELFEYSDEDLDTGVAEIDAIETAFANAIKLVMDAGGTGAFTVGEEIVGDLYLATATATISGDAVDAVTVTD 240 (390) T ss_pred CceeeeeEEeeeccCCccccccccccccccccccceeeeeeccCCcccccccceeeecCcceeEEEEecCCeEEEEEEee Confidence 999999999999999999999999999999999999999999998888877776655533322222 112223478999 Q ss_pred CCCcccCCCccccccC Q lcl|Aclame:pro 241 RGKSFESSPFDNDFMD 256 (256) Q Consensus 241 ~G~~~~~~pf~~~~~~ 256 (256) .|++|++.|.-.--.. T Consensus 241 ~GsGYt~~~~ptVtis 256 (390) T protein:vir:10 241 GGEHYKSALPPTVTIT 256 (390) T ss_pred CCCCcccCceeEEEec Confidence 9999987755332222 No 16 >protein:vir:104739 Length: 470 # NCBI annotation: T4-like neck protein # Family: family:all:1104 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214353;genbank:gi:61805993;genbank:GeneID:3294259 Probab=100.00 E-value=2.5e-87 Score=495.38 Aligned_cols=230 Identities=29% Similarity=0.518 Sum_probs=184.6 Q ss_pred ccccceEeeccccchHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccccccccccceeeeeeeehhhhccCCcchhhh Q lcl|Aclame:pro 25 EILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKFTKAWKFAAYLNSFEGYEGAKSFFS 104 (256) Q Consensus 25 ~~~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlPRe~v~~D~v~~E~~~skF~~a~~ieaYl~n~eGy~g~gd~~S 104 (256) -.+||||| |||.+||+|+|+||+|||||||+||||||||+|++|+||+|+++|||++||+|||||+|||||+|+++||| T Consensus 1 ~~~~~~~~-~~~~~~~~~~~~~~~e~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (470) T protein:vir:10 1 MALNPFFL-QGTSSEQRLTQDLINEHLKIYGVEVTYIPRKYVNTKSIIEEVQSSKFDDNFAIEAYVNTYEGYGGQGDVLT 79 (470) T ss_pred CcccceeE-cCCCchhHHHHHHHHHHhHhccceEEEechhhcccccccccccccccccceeEEEEeecccCcCCcceeee Confidence 67999997 99999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hcCceeeeeEEEEEccchhh------------------hhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcCCceE Q lcl|Aclame:pro 105 NFGMQVQDEVTLSINPNLFK------------------HQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQLGQNAI 166 (256) Q Consensus 105 KFG~~~~DE~T~~IS~~rF~------------------~~~~~~rP~EGDLIYfPm~n~lFEI~~VE~~~PFYQ~Gk~yv 166 (256) |||+|++|||+|+|||+||+ +|+...||+|||||||||+|+||||+|||+++||||+||+|+ T Consensus 80 ~fg~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~egdl~~~p~~~~~~~i~~ve~~~p~~~~G~~~~ 159 (470) T protein:vir:10 80 KFGMSIRDEVTLTISKERFEDFIAPFMAGLDDGPGGNEEVILATRPREGDLVFFPLGSRLFEVKFVEHEDPFYQLGKNYV 159 (470) T ss_pred ecCcccceEEEEEECCccccccccchhhcccCcccccccccccCCcccccEEEecCCCCEEEEEecCCCCcchhcCccee Confidence 99999999999999999996 455578999999999999999999999999999999999999 Q ss_pred EEEEEEEEecCCCccCCCCcccccccCCcccceeeecccCCccceeccceeccccce--eecccccc------------- Q lcl|Aclame:pro 167 RKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQ--INSEAKEY------------- 231 (256) Q Consensus 167 ~~l~ce~F~Ys~E~idtg~~~iD~i~~~~~~~l~l~~i~~~~g~~~~~~~~~~e~~~--~~~e~~~~------------- 231 (256) |+|+|++|+|++|.+++++..++.......+...+.......+.........+.... ++..+..+ T Consensus 160 ~~it~~~f~ysge~~s~~v~~~~~~~~~~g~~~t~t~~~~g~~~~~t~~~~~g~vt~ititn~Gsgyt~~ptVti~~~~~ 239 (470) T protein:vir:10 160 YQLKCELFEYEDEVIDTSIDAIDTVVQDDGYISKLQLVGIGRTAEVAASIGVGYVREIFLNNDGSGFTSPPTITFSASPA 239 (470) T ss_pred EEeeeceeEecCCccccceecccccccccccceeeeecCCCccceeeeeecceeeeEeEeeccccceeccCEEEEccCCC Confidence 999999999999999999999999987776666665543332222221111111111 01111111 Q ss_pred -----------------cceeeEEcCCCCcccCCCccccccC Q lcl|Aclame:pro 232 -----------------VEPYVVVNNRGKSFESSPFDNDFMD 256 (256) Q Consensus 232 -----------------v~~~~vi~~~G~~~~~~pf~~~~~~ 256 (256) .-..+.+++.|++|+..|- -.+-. T Consensus 240 ~~~~~a~~~~~t~~~~g~vt~ititn~Gsgytt~pt-vt~~~ 280 (470) T protein:vir:10 240 FTDARAVGILTTRANVTSIEKILMTSAGAGYITPPT-ITISG 280 (470) T ss_pred CCCccceeeEeecceeeEEEEEEEecCcccccccce-EEEcc Confidence 1122445555666655541 11111 No 17 >protein:vir:1385 Length: 107 # NCBI annotation: Gp8 protein # Family: family:all:3858 # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612837;genbank:gi:20065971;genbank:GeneID:935786 Probab=39.08 E-value=1 Score=20.50 Aligned_cols=106 Identities=11% Similarity=0.137 Sum_probs=75.7 Q ss_pred hcCe-eEEEeeeeeccccccccccccccccceeeeeeeehhhhccCCcchhhhhcCceeeeeEEEEEccchhhhhhcCCC Q lcl|Aclame:pro 53 MRGV-ECYYVPREYVSPDLIFGEDLKNKFTKAWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKE 131 (256) Q Consensus 53 m~G~-dvyYlPRe~v~~D~v~~E~~~skF~~a~~ieaYl~n~eGy~g~gd~~SKFG~~~~DE~T~~IS~~rF~~~~~~~r 131 (256) |.+- -|....++- ..|. .|... ..+...+++-|.+....| +++++-=+++..-.++|+| ||..-++..+ T Consensus 1 ~~~~hRI~i~~~~~-~~D~-~G~~~-~~w~~~~~~WA~v~~~~g----~E~~~a~~~~~~~~~~f~i---Ry~~~i~~~~ 70 (107) T protein:vir:13 1 MARYERISIKKLEE-KNIK-GRRQE-ECLIPFYDCWAEILDLYG----QELYGALQMKLENTIIFKI---RYCKKVEELR 70 (107) T ss_pred CCcceEEEEEeeee-eeCC-CCCee-cceEeEEEEEEEEecCCc----hheeecceeheeeeEEEEE---EecCCccccc Confidence 7664 455555554 4575 56554 469999999999999755 6777777788888888887 3444555556 Q ss_pred CccccEEEecCCCceEEEEeeccCCchhhcCCceEEEEEEEEEe Q lcl|Aclame:pro 132 PKEGDLIYFPMDNSLFEINWVEPYDPFYQLGQNAIRKITAGKFI 175 (256) Q Consensus 132 P~EGDLIYfPm~n~lFEI~~VE~~~PFYQ~Gk~yv~~l~ce~F~ 175 (256) +..++-|-+ .++.|+|..|.+.+ .++-..+|.|+.=. T Consensus 71 ~t~~~Ri~~--~g~~y~I~~v~~~~-----~~~~~l~i~c~eV~ 107 (107) T protein:vir:13 71 NKENFIVEW--QGRKYEIYYPDFLG-----YNKQFVKLKCKEVL 107 (107) T ss_pred cCcCcEEEE--CCeEEEEEecCCcc-----cCCeEEEEEEEEeC Confidence 667777766 78999999997433 24557899998766 No 18 >protein:vir:97237 Length: 122 # NCBI annotation: hypothetical protein ORF025 # Family: family:all:704 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294533;genbank:gi:149408254;genbank:GeneID:5237102 Probab=28.72 E-value=1.7 Score=19.29 Aligned_cols=121 Identities=12% Similarity=0.110 Sum_probs=77.1 Q ss_pred ccceEeeccccchHHHHHHHHHHHHHhcCeeEEEeeeeeccccccccc-cccccccceeeeeeeehhhhccCCcchhhhh Q lcl|Aclame:pro 27 LNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGE-DLKNKFTKAWKFAAYLNSFEGYEGAKSFFSN 105 (256) Q Consensus 27 ~NpYfn~~g~~~eQ~L~~~LV~E~Iqm~G~dvyYlPRe~v~~D~v~~E-~~~skF~~a~~ieaYl~n~eGy~g~gd~~SK 105 (256) .+.|. .-|..++ +.|+-+|..|.+.+.+-..-|+-.++ ++-+.-...|.+.+.+.+|.--.=+|.+ T Consensus 1 M~~y~------~~~~~a~----~Li~kfG~~vtl~r~~~g~y~~~~g~~~p~~~t~~~~~~~gv~~~~~~~~idGtl--- 67 (122) T protein:vir:97 1 MARFD------SAIALAK----KLIKKNGQAVTLRGFTAGAAPDPAKPWKPGGNVAADQTIEAVFLDYEQRYIDGQT--- 67 (122) T ss_pred Cccch------HHHHHHH----HHHHHhCCceEEEEeccceeCCCCCceecCCceeeeeeeEEEeeccchhhccCcE--- Confidence 23333 2344444 45555999999888777666666665 2334446789999999888754333322 Q ss_pred cCceeeeeEEEEEccchhhhhhcCCCCccccEEEecCCCceEEEEeeccCCchhhcCCceEEEEEEEE Q lcl|Aclame:pro 106 FGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQLGQNAIRKITAGK 173 (256) Q Consensus 106 FG~~~~DE~T~~IS~~rF~~~~~~~rP~EGDLIYfPm~n~lFEI~~VE~~~PFYQ~Gk~yv~~l~ce~ 173 (256) ++..|..-+...... .-.|+-||+|-+ +..-|.|-.|++-+| -|--..|+|..-+ T Consensus 68 --I~~GD~~l~~~a~~~------~~~P~~gD~v~~--~g~~~~Vi~v~~i~p---a~~~v~y~lqlRk 122 (122) T protein:vir:97 68 --IRMGDQRVFMPAEGL------TAPPEVEGLVLR--GLEVWKVIAVKPLNP---NGQAIMYELQVRQ 122 (122) T ss_pred --EeecCEEEEEeeCCC------ccccccCCEEEe--CCEEEEEEeccccCC---CCceEEEEEEeeC Confidence 455565444332211 347888999965 677899999987666 4555667777777 Done!