BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:107619|NCBI_annot:major tail protein, phi13 family|genbank:acc:YP_338193;genbank:gi:77020189;genbank:GeneID: 3703750 (202 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|2378|lcl|protein:vir:105009 Length: 202 # NCBI annotation: pu... 404 e-115 gi|2431|lcl|protein:vir:107619 Length: 202 # NCBI annotation: ma... 404 e-115 gi|2484|lcl|protein:vir:102845 Length: 202 # NCBI annotation: ma... 404 e-115 gi|2967|lcl|protein:vir:102037 Length: 202 # NCBI annotation: ma... 404 e-115 gi|17137|lcl|protein:vir:1388 Length: 198 # NCBI annotation: maj... 71 1e-14 gi|13401|lcl|protein:vir:1275 Length: 200 # NCBI annotation: hyp... 68 8e-14 gi|6166|lcl|protein:vir:98344 Length: 317 # NCBI annotation: hyp... 50 2e-08 gi|13181|lcl|protein:vir:81108 Length: 317 # NCBI annotation: hy... 50 2e-08 gi|16588|lcl|protein:vir:9416 Length: 317 # NCBI annotation: phi... 50 2e-08 gi|12529|lcl|protein:vir:80010 Length: 317 # NCBI annotation: hy... 50 2e-08 gi|17446|lcl|protein:vir:4606 Length: 317 # NCBI annotation: hyp... 50 2e-08 gi|8682|lcl|protein:vir:102112 Length: 210 # NCBI annotation: ph... 48 1e-07 gi|1682|lcl|protein:vir:100637 Length: 214 # NCBI annotation: 77... 44 1e-06 gi|15109|lcl|protein:vir:3875 Length: 202 # NCBI annotation: maj... 44 1e-06 gi|18561|lcl|protein:vir:9515 Length: 214 # NCBI annotation: hyp... 44 1e-06 gi|16642|lcl|protein:vir:9710 Length: 203 # NCBI annotation: hyp... 43 2e-06 gi|5735|lcl|protein:vir:95370 Length: 194 # NCBI annotation: maj... 43 2e-06 gi|12650|lcl|protein:vir:80149 Length: 193 # NCBI annotation: hy... 43 3e-06 gi|6474|lcl|protein:vir:101304 Length: 214 # NCBI annotation: hy... 42 5e-06 gi|6623|lcl|protein:vir:95971 Length: 301 # NCBI annotation: ORF... 38 1e-04 gi|11077|lcl|protein:vir:78324 Length: 195 # NCBI annotation: Ts... 33 0.003 gi|13209|lcl|protein:vir:81151 Length: 195 # NCBI annotation: pu... 30 0.021 gi|17556|lcl|protein:vir:968 Length: 202 # NCBI annotation: Orf5... 28 0.056 gi|24686|lcl|protein:vir:79769 Length: 635 # NCBI annotation: te... 24 1.2 gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p0... 23 3.4 gi|5082|lcl|protein:vir:95133 Length: 511 # NCBI annotation: hyp... 23 3.6 gi|13580|lcl|protein:vir:4706 Length: 133 # NCBI annotation: phi... 22 6.5 gi|9232|lcl|protein:vir:97071 Length: 561 # NCBI annotation: put... 22 6.5 gi|19650|lcl|protein:vir:10361 Length: 561 # NCBI annotation: te... 22 7.7 gi|3300|lcl|protein:vir:100942 Length: 499 # NCBI annotation: Gp... 21 9.3 gi|155|lcl|protein:vir:77595 Length: 499 # NCBI annotation: term... 21 9.5 gi|13374|lcl|protein:vir:9262 Length: 517 # NCBI annotation: gp2... 21 9.5 >gi|2378|lcl|protein:vir:105009 Length: 202 # NCBI annotation: putative major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459974;genbank:gi:85701389;genbank:GeneID :3882150 Length = 202 Score = 404 bits (1039), Expect = e-115, Method: Compositional matrix adjust. Identities = 202/202 (100%), Positives = 202/202 (100%) Query: 1 MAGEVVRISSTVGVDNLVYAKVLQDDSSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNR 60 MAGEVVRISSTVGVDNLVYAKVLQDDSSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNR Sbjct: 1 MAGEVVRISSTVGVDNLVYAKVLQDDSSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNR 60 Query: 61 KSEIAESDGETEVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKAN 120 KSEIAESDGETEVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKAN Sbjct: 61 KSEIAESDGETEVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKAN 120 Query: 121 DKYRYVWLLKGKLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADEDEPTFTK 180 DKYRYVWLLKGKLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADEDEPTFTK Sbjct: 121 DKYRYVWLLKGKLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADEDEPTFTK 180 Query: 181 LVGDNWFNKVYEKPVTQPPAGK 202 LVGDNWFNKVYEKPVTQPPAGK Sbjct: 181 LVGDNWFNKVYEKPVTQPPAGK 202 >gi|2431|lcl|protein:vir:107619 Length: 202 # NCBI annotation: major tail protein, phi13 family # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338193;genbank:gi:77020189;genbank:GeneID :3703750 Length = 202 Score = 404 bits (1039), Expect = e-115, Method: Compositional matrix adjust. Identities = 202/202 (100%), Positives = 202/202 (100%) Query: 1 MAGEVVRISSTVGVDNLVYAKVLQDDSSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNR 60 MAGEVVRISSTVGVDNLVYAKVLQDDSSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNR Sbjct: 1 MAGEVVRISSTVGVDNLVYAKVLQDDSSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNR 60 Query: 61 KSEIAESDGETEVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKAN 120 KSEIAESDGETEVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKAN Sbjct: 61 KSEIAESDGETEVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKAN 120 Query: 121 DKYRYVWLLKGKLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADEDEPTFTK 180 DKYRYVWLLKGKLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADEDEPTFTK Sbjct: 121 DKYRYVWLLKGKLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADEDEPTFTK 180 Query: 181 LVGDNWFNKVYEKPVTQPPAGK 202 LVGDNWFNKVYEKPVTQPPAGK Sbjct: 181 LVGDNWFNKVYEKPVTQPPAGK 202 >gi|2484|lcl|protein:vir:102845 Length: 202 # NCBI annotation: major tail protein, phi13 family # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338142;genbank:gi:77020241;genbank:GeneID :3703754 Length = 202 Score = 404 bits (1039), Expect = e-115, Method: Compositional matrix adjust. Identities = 202/202 (100%), Positives = 202/202 (100%) Query: 1 MAGEVVRISSTVGVDNLVYAKVLQDDSSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNR 60 MAGEVVRISSTVGVDNLVYAKVLQDDSSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNR Sbjct: 1 MAGEVVRISSTVGVDNLVYAKVLQDDSSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNR 60 Query: 61 KSEIAESDGETEVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKAN 120 KSEIAESDGETEVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKAN Sbjct: 61 KSEIAESDGETEVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKAN 120 Query: 121 DKYRYVWLLKGKLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADEDEPTFTK 180 DKYRYVWLLKGKLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADEDEPTFTK Sbjct: 121 DKYRYVWLLKGKLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADEDEPTFTK 180 Query: 181 LVGDNWFNKVYEKPVTQPPAGK 202 LVGDNWFNKVYEKPVTQPPAGK Sbjct: 181 LVGDNWFNKVYEKPVTQPPAGK 202 >gi|2967|lcl|protein:vir:102037 Length: 202 # NCBI annotation: major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512320;genbank:gi:89152489;genbank:GeneID :3953030 Length = 202 Score = 404 bits (1039), Expect = e-115, Method: Compositional matrix adjust. Identities = 202/202 (100%), Positives = 202/202 (100%) Query: 1 MAGEVVRISSTVGVDNLVYAKVLQDDSSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNR 60 MAGEVVRISSTVGVDNLVYAKVLQDDSSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNR Sbjct: 1 MAGEVVRISSTVGVDNLVYAKVLQDDSSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNR 60 Query: 61 KSEIAESDGETEVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKAN 120 KSEIAESDGETEVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKAN Sbjct: 61 KSEIAESDGETEVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKAN 120 Query: 121 DKYRYVWLLKGKLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADEDEPTFTK 180 DKYRYVWLLKGKLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADEDEPTFTK Sbjct: 121 DKYRYVWLLKGKLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADEDEPTFTK 180 Query: 181 LVGDNWFNKVYEKPVTQPPAGK 202 LVGDNWFNKVYEKPVTQPPAGK Sbjct: 181 LVGDNWFNKVYEKPVTQPPAGK 202 >gi|17137|lcl|protein:vir:1388 Length: 198 # NCBI annotation: major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612840;genbank:gi:20065974;genbank:GeneID :935777 Length = 198 Score = 70.9 bits (172), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 87/187 (46%), Gaps = 6/187 (3%) Query: 12 VGVDNLVYAKVLQDDSSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGET 71 G ++ A V ++ ++ K+ A+ K+T K E SD+ E ES Sbjct: 10 CGCKDIYIAIVNKNTATEYATATPIKLGRALNAKVTTKKTVESTESDDTIEETFESFDSI 69 Query: 72 EVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKANDKYRYVWLLKG 131 E+E +V LS KA + G +DG L + + +AIG+R + N KY +VW G Sbjct: 70 EIEFDVNKLSPEQKAILRG-ATYEDGFLINNVDDQAKEVAIGWRARQTNGKYEFVWYYCG 128 Query: 132 KL-SQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADE----DEPTFTKLVGDNW 186 K S +++ ET KP QT K+KG+F R D T DE + K NW Sbjct: 129 KFNSGWDDQYETNGKKPKTQTDKMKGTFYGRQKDGNTSIEVDETFLLESHNDAKSSITNW 188 Query: 187 FNKVYEK 193 F+KV EK Sbjct: 189 FSKVQEK 195 >gi|13401|lcl|protein:vir:1275 Length: 200 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690767;genbank:gi:22855007;genbank:GeneID :955222 Length = 200 Score = 68.2 bits (165), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 3/189 (1%) Query: 13 GVDNLVYAKVLQDDSSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGETE 72 G+D A+VL+D ++++ +++ GAV +KL K +E ++DN S G+ + Sbjct: 7 GLDMFHIAEVLKDTKDELEFSVPEELPGAVSMKLDPKSETETFYADNGAFAQLSSLGDID 66 Query: 73 VEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKANDKYRYVWLLKGK 132 E+EV L L +A I G V+ G+ + +A+GFR + YRY W LKGK Sbjct: 67 GEMEVADLPLDMQAKIFG-KTVEGGIHFSSADDRTLEIALGFRAKISTGGYRYYWALKGK 125 Query: 133 LSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADEDEPTFTKLVGDNWFNKVYE 192 E +T++ KP+ Q T++K F + K + + + WF +V Sbjct: 126 PELVPVEHKTEEGKPSPQPTQVKIKFSPLTNLKKGKKRWEAKAEEGNGINAETWFKQVVY 185 Query: 193 KPVT--QPP 199 K +T +PP Sbjct: 186 KDITKEEPP 194 >gi|6166|lcl|protein:vir:98344 Length: 317 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918936;genbank:gi:119443698;genbank:GeneI D:4594506 Length = 317 Score = 50.4 bits (119), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 7/163 (4%) Query: 12 VGVDNLVYAKVLQDDSSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGET 71 +GV N YA +L+D + + ++ ++++ + +E + D+ + A S+G+ Sbjct: 29 IGVSNFYYAPILKDTENEWETGAGTRIRFLKEIEVDRPQDTEEDYGDDMVAATAVSNGKL 88 Query: 72 EVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEK---PYLAIGFRFLKANDKYRYVWL 128 V+ + KA + G K GV K G K P +AI F ++ +V L Sbjct: 89 SVKTTFVTVPADDKAFLNG---AKKGVGGYKY-GAKDIPPDVAIVFERRNHDESSEWVGL 144 Query: 129 LKGKLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTA 171 KGK ++ + +TK+DK FQ ++G+FI+R FD+ + T Sbjct: 145 FKGKFTRSSIKGQTKQDKVEFQNDDVEGNFIDRLFDESSHVTG 187 >gi|13181|lcl|protein:vir:81108 Length: 317 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429880;genbank:gi:156603933;genbank:Ge neID:5525328 Length = 317 Score = 50.4 bits (119), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 7/163 (4%) Query: 12 VGVDNLVYAKVLQDDSSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGET 71 +GV N YA +L+D + + ++ ++++ + +E + D+ + A S+G+ Sbjct: 29 IGVSNFYYAPILKDTENEWETGAGTRIRFLKEIEVDRPQDTEEDYGDDMVAATAVSNGKL 88 Query: 72 EVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEK---PYLAIGFRFLKANDKYRYVWL 128 V+ + KA + G K GV K G K P +AI F ++ +V L Sbjct: 89 SVKTTFVTVPADDKAFLNG---AKKGVGGYKY-GAKDIPPDVAIVFERRNHDESSEWVGL 144 Query: 129 LKGKLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTA 171 KGK ++ + +TK+DK FQ ++G+FI+R FD+ + T Sbjct: 145 FKGKFTRSSIKGQTKQDKVEFQNDDVEGNFIDRLFDESSHVTG 187 >gi|16588|lcl|protein:vir:9416 Length: 317 # NCBI annotation: phi PVL orf 13-like protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803394;genbank:gi:29028706;genbank:GeneID :1258144 Length = 317 Score = 50.4 bits (119), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 7/163 (4%) Query: 12 VGVDNLVYAKVLQDDSSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGET 71 +GV N YA +L+D + + ++ ++++ + +E + D+ + A S+G+ Sbjct: 29 IGVSNFYYAPILKDTENEWETGAGTRIRFLKEIEVDRPQDTEEDYGDDMVAATAVSNGKL 88 Query: 72 EVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEK---PYLAIGFRFLKANDKYRYVWL 128 V+ + KA + G K GV K G K P +AI F ++ +V L Sbjct: 89 SVKTTFVTVPADDKAFLNG---AKKGVGGYKY-GAKDIPPDVAIVFERRNHDESSEWVGL 144 Query: 129 LKGKLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTA 171 KGK ++ + +TK+DK FQ ++G+FI+R FD+ + T Sbjct: 145 FKGKFTRSSIKGQTKQDKVEFQNDDVEGNFIDRLFDESSHVTG 187 >gi|12529|lcl|protein:vir:80010 Length: 317 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430008;genbank:gi:156604063;genbank:Ge neID:5525470 Length = 317 Score = 50.4 bits (119), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 7/163 (4%) Query: 12 VGVDNLVYAKVLQDDSSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGET 71 +GV N YA +L+D + + ++ ++++ + +E + D+ + A S+G+ Sbjct: 29 IGVSNFYYAPILKDTENEWETGAGTRIRFLKEIEVDRPQDTEEDYGDDMVAATAVSNGKL 88 Query: 72 EVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEK---PYLAIGFRFLKANDKYRYVWL 128 V+ + KA + G K GV K G K P +AI F ++ +V L Sbjct: 89 SVKTTFVTVPADDKAFLNG---AKKGVGGYKY-GAKDIPPDVAIVFERRNHDESSEWVGL 144 Query: 129 LKGKLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTA 171 KGK ++ + +TK+DK FQ ++G+FI+R FD+ + T Sbjct: 145 FKGKFTRSSIKGQTKQDKVEFQNDDVEGNFIDRLFDESSHVTG 187 >gi|17446|lcl|protein:vir:4606 Length: 317 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058451;genbank:gi:9635177;genbank:GeneID: 1262712 Length = 317 Score = 50.4 bits (119), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 7/163 (4%) Query: 12 VGVDNLVYAKVLQDDSSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGET 71 +GV N YA +L+D + + ++ ++++ + +E + D+ + A S+G+ Sbjct: 29 IGVSNFYYAPILKDTENEWETGAGTRIRFLKEIEVDRPQDTEEDYGDDMVAATAVSNGKL 88 Query: 72 EVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEK---PYLAIGFRFLKANDKYRYVWL 128 V+ + KA + G K GV K G K P +AI F ++ +V L Sbjct: 89 SVKTTFVTVPADDKAFLNG---AKKGVGGYKY-GAKDIPPDVAIVFERRNHDESSEWVGL 144 Query: 129 LKGKLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTA 171 KGK ++ + +TK+DK FQ ++G+FI+R FD+ + T Sbjct: 145 FKGKFTRSSIKGQTKQDKVEFQNDDVEGNFIDRLFDESSHVTG 187 >gi|8682|lcl|protein:vir:102112 Length: 210 # NCBI annotation: phage major tail protein, phi13 family subfamily # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699936;genbank:gi:110804026;genbank:GeneI D:4206655 Length = 210 Score = 47.8 bits (112), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 1/184 (0%) Query: 7 RISSTVGVDNLVYAKVLQDDSSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAE 66 +I V V L A +L ++ I + + +EG ++ + K ++ + + RK + Sbjct: 8 KILPLVNVKRLFVAHLLTEEIGKISFDTPRYLEGVKQIGIKPKQNTDPYYHEGRKIFDEQ 67 Query: 67 SDGETEVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKANDKYRYV 126 + + V I + L+ + + G K G + P LAI + KA +Y Sbjct: 68 TIQDVAVTINITDLTDEDECYVMGHKLAKTGGVIRNDNDIAPTLAIMYEAEKAQGVTKYG 127 Query: 127 WLLKGKLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADEDEPTFTKLVGDNW 186 L G +E+ + K+ K NFQ KL+ SF D K+ D T+ N+ Sbjct: 128 ILYAGTFGLSDEDIKDKEGKSNFQPKKLQASF-RPLIDGSWKYDVCSDSANVTEEFLTNF 186 Query: 187 FNKV 190 F +V Sbjct: 187 FKQV 190 >gi|1682|lcl|protein:vir:100637 Length: 214 # NCBI annotation: 77ORF020 # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958612;genbank:gi:41189535;genbank:GeneID :2743783 Length = 214 Score = 44.3 bits (103), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/145 (22%), Positives = 71/145 (48%), Gaps = 1/145 (0%) Query: 12 VGVDNLVYAKVLQDDSSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGET 71 + + L +AK L + + +KY+D+ K G K+ + + ++D E +DGE Sbjct: 13 INITGLGFAK-LTKEGAELKYSDITKTRGLQKIGVETGGELKTAYADGGPIESGNTDGEG 71 Query: 72 EVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKANDKYRYVWLLKG 131 ++ +++ + + +DGV +EK+ + Y+A+ FR + + +R V L K Sbjct: 72 KISLQMHAFPKEIRKIVFNEDYDEDGVYEEKQGKQNNYVAVWFRQERKDGTFRTVLLPKV 131 Query: 132 KLSQEEEEAETKKDKPNFQTTKLKG 156 + + + ET + +F + +++G Sbjct: 132 MFTNPKIDGETAEKDWDFSSEEVEG 156 >gi|15109|lcl|protein:vir:3875 Length: 202 # NCBI annotation: major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680492;swissprot:trembl:p94216;genbank:gi :22296532;interpro:IPR006490;uniprot:P94216;genbank:Gene ID:951722 Length = 202 Score = 44.3 bits (103), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 4/128 (3%) Query: 36 KKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGETEVE--IEVRGLSLSTKADIEGFPE 93 +KM+G VKL K + + +D+ I S G TE IE+ + K+D+ G + Sbjct: 35 RKMQGLSSVKLDIKTEQKTLSADDGPYLIL-SGGITEATETIEMYDVDSVMKSDLFGI-K 92 Query: 94 VKDGVLDEKREGEKPYLAIGFRFLKANDKYRYVWLLKGKLSQEEEEAETKKDKPNFQTTK 153 V +GV + Y A FR +N KY +V +LKG S + +T P+ Sbjct: 93 VVNGVEVYPKNLSPNYAATLFRTKLSNGKYVWVGMLKGMFSLPGVDTKTVDGTPDPSADS 152 Query: 154 LKGSFIER 161 ++GSFI R Sbjct: 153 IEGSFIPR 160 >gi|18561|lcl|protein:vir:9515 Length: 214 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835562;genbank:gi:30043945;genbank:GeneID :1260544 Length = 214 Score = 44.3 bits (103), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/145 (22%), Positives = 71/145 (48%), Gaps = 1/145 (0%) Query: 12 VGVDNLVYAKVLQDDSSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGET 71 + + L +AK L + + +KY+D+ K G K+ + + ++D E +DGE Sbjct: 13 INITGLGFAK-LTKEGAELKYSDITKTRGLQKIGVETGGELKTAYADGGPIESGNTDGEG 71 Query: 72 EVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKANDKYRYVWLLKG 131 ++ +++ + + +DGV +EK+ + Y+A+ FR + + +R V L K Sbjct: 72 KISLQMHAFPKEIRKIVFNEDYDEDGVYEEKQGKQNNYVAVWFRQERRDGTFRTVLLPKV 131 Query: 132 KLSQEEEEAETKKDKPNFQTTKLKG 156 + + + ET + +F + +++G Sbjct: 132 MFTNPKIDGETAEKDWDFSSEEVEG 156 >gi|16642|lcl|protein:vir:9710 Length: 203 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795472;genbank:gi:28876219;genbank:GeneID :1257763 Length = 203 Score = 43.1 bits (100), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 5/146 (3%) Query: 19 YAKVLQD-DSSAIKYTDVKKMEG--AVKVKLTKKVASEVMWSDNRKSEIAESDGETEVEI 75 Y VL D D K +K + G + K+ +T ++ + V D ++ ET++EI Sbjct: 12 YYGVLDDKDMVKDKGAGIKHLPGMKSAKLDITNELVT-VSADDGPYVVLSGGITETKLEI 70 Query: 76 EVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKANDKYRYVWLLKGKLSQ 135 EV L+ + D G V+ GV R +A FR N K +V LLKGK + Sbjct: 71 EVLDLTSDARKDFFGI-TVEKGVEKYNRSLTPKDIACVFRTSDENGKAIWVGLLKGKFNL 129 Query: 136 EEEEAETKKDKPNFQTTKLKGSFIER 161 EA+TK+ P+ + + G+F+ R Sbjct: 130 PGMEAQTKEGAPDPKPDSVTGNFVAR 155 >gi|5735|lcl|protein:vir:95370 Length: 194 # NCBI annotation: major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764482;genbank:gi:115334636;genbank:GeneI D:5179257 Length = 194 Score = 43.1 bits (100), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 6/185 (3%) Query: 13 GVDNLVYAKVLQDD-SSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGET 71 G+ N+ YA + +D + AI Y K++ GAV + L + ++D+ ++ Sbjct: 12 GLRNVHYAVITEDPVTGAITYGTPKRIPGAVSLTLEPAGETFDFYADDSAYYSEATNNGY 71 Query: 72 EVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKANDKYRYVWLLKG 131 + E+EV L+ + D+ G ++GV+ E + A+ F F R+V L Sbjct: 72 DGELEVANLTDEFRIDVLG-DTYENGVMYENADQVTKPFALLFEFQGDKKAKRHV-LYYC 129 Query: 132 KLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADEDEPTFTKLVGDNWFNKVY 191 K S+ +TK + QT+ L +F R D + AD P + + D+W+ +V+ Sbjct: 130 KASRPTVAGQTKAENTEPQTSTL--NFTARPRPDTKEVKADT-TPEIDQALYDSWYTQVH 186 Query: 192 EKPVT 196 K T Sbjct: 187 VKGAT 191 >gi|12650|lcl|protein:vir:80149 Length: 193 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425610;genbank:gi:155042943;genbank:Ge neID:5469578 Length = 193 Score = 42.7 bits (99), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 84/182 (46%), Gaps = 6/182 (3%) Query: 13 GVDNLVYAKVLQDDSS-AIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGET 71 G+ N+ YA + +D ++ AI Y K++ GAV + L + ++D+ ++ Sbjct: 12 GLRNVHYAVITEDPATGAITYGTPKRIPGAVSLSLEPAGETFDFYADDSAYYSEATNNGY 71 Query: 72 EVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKANDKYRYVWLLKG 131 + E+E+ L+ + D+ G V + + + KP+ A+ F F R+V L Sbjct: 72 DGELELANLTDEFRIDVLGDTYVNGVMYENADQVTKPF-ALLFEFQGDKKAKRHV-LYYC 129 Query: 132 KLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADEDEPTFTKLVGDNWFNKVY 191 K S+ +TK + QT+ L +F R D + AD P + + D+W+ +V+ Sbjct: 130 KASRPTVAGQTKAENTEPQTSTL--NFTARPRPDTKEVKADT-TPEIDQALYDSWYTQVH 186 Query: 192 EK 193 K Sbjct: 187 VK 188 >gi|6474|lcl|protein:vir:101304 Length: 214 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908837;genbank:gi:118725101;genbank:GeneI D:4555875 Length = 214 Score = 42.0 bits (97), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 1/145 (0%) Query: 12 VGVDNLVYAKVLQDDSSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGET 71 + + L +AK L + + +KY+D+ K G K+ + + ++D E +DGE Sbjct: 13 INITGLGFAK-LTKEGAELKYSDITKTRGLQKIGVETGGDLKTAYADGGPIESGNTDGEG 71 Query: 72 EVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKANDKYRYVWLLKG 131 ++ +++ + + +DGV E + + Y+AI FR + + +R V L K Sbjct: 72 KISLQMHAFPKEIRKIVFNEEYDEDGVYKETQGKQNNYVAIWFRQERRDGTFRTVLLPKV 131 Query: 132 KLSQEEEEAETKKDKPNFQTTKLKG 156 + + + ET + +F + +++G Sbjct: 132 MFTNPKIDGETAEKDWDFSSEEVEG 156 >gi|6623|lcl|protein:vir:95971 Length: 301 # NCBI annotation: ORF014 # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239807;genbank:gi:66395464;genbank:GeneID :5132888 Length = 301 Score = 37.7 bits (86), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/181 (20%), Positives = 86/181 (47%), Gaps = 10/181 (5%) Query: 10 STVGVDNLVYAKVLQDDS-SAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESD 68 S + + +L +A + +D++ I+YT++ + G ++ + ++D E +D Sbjct: 10 SFINIKDLGFALLKKDEADGTIEYTNITQTRGLQEISVETGGDVVNAYADGSIIESGNTD 69 Query: 69 GETEVEIEVRGLSLSTKADIEGFPEV--KDGVLDEKREGEKPYLAIGFRFLKANDKYRYV 126 GE ++ + + + I F E+ ++GV E++ + Y+A+ F+ + + ++ V Sbjct: 70 GEGKISMTMHAFPQEIRELI--FNEIYNENGVYSEEQGKQNNYVAVWFKRERKDGTFQRV 127 Query: 127 WLLKGKLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADE-----DEPTFTKL 181 L K S + E +T ++ F + + +G+ + R D + K D DE F K+ Sbjct: 128 GLTKVMFSDPQIEGKTSEENWEFSSEESEGTAMHRIADGKRKIMFDSAKDGADEKEFFKV 187 Query: 182 V 182 + Sbjct: 188 L 188 >gi|11077|lcl|protein:vir:78324 Length: 195 # NCBI annotation: Tsh # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468650;genbank:gi:157325228;genbank:Ge neID:5601670 Length = 195 Score = 33.1 bits (74), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 12/97 (12%) Query: 96 DGVLDEKREGEKPYLAIGFRFLKANDKYRYVWLLKGKLSQEEEEAETKKDKPN-FQTTKL 154 DG++ + PY + + + LLKGK Q++ + T +DKP + T L Sbjct: 94 DGIVTVGKNTAPPYASCVMESETLRGEPVFFALLKGKYGQDDVKLNTSEDKPKEPEATSL 153 Query: 155 KGSFIERDFDDRTKFTADEDEPTFTKLVGDNWFNKVY 191 G F+ D D F VG+ + +K+Y Sbjct: 154 TGEFVYNDAGD-----------VFAMAVGEEFRDKIY 179 >gi|13209|lcl|protein:vir:81151 Length: 195 # NCBI annotation: putative major capsid protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285818;genbank:gi:148747739;genbank:Ge neID:5247194 Length = 195 Score = 30.0 bits (66), Expect = 0.021, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 5/146 (3%) Query: 11 TVGVDNLVYAKVLQDDSSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGE 70 T G+DN V+ L D ++ T VK + GAV+ + ++DN S+ Sbjct: 10 TFGLDN-VHIAFLIDGATPSWETPVK-IPGAVRFAPEPQGEESTFYADNGPYFSYTSNNG 67 Query: 71 TEVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKANDKYRYVWLLK 130 E+E+ L A++ G+ +G+L E +G A+ + L R+V+ + Sbjct: 68 YTAELEMANLPDDILAEMLGWEIDANGMLVETTDGTPKEFALLGQILGDKKNRRFVY-YR 126 Query: 131 GKLSQEEEEAETKKD--KPNFQTTKL 154 K S+ E T+ + +P QT + Sbjct: 127 CKASRPTAEHNTRGESVEPTTQTLNI 152 >gi|17556|lcl|protein:vir:968 Length: 202 # NCBI annotation: Orf50 # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076622;genbank:gi:13095730;genbank:GeneID :920287 Length = 202 Score = 28.5 bits (62), Expect = 0.056, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 42/101 (41%), Gaps = 7/101 (6%) Query: 94 VKDGVLDEKREGEKPYLAIGFRFLKANDKYRYVWLLKGKLSQEEEEAETKKDKPNFQTTK 153 V+ GV E E A+ F+F R+V L + + DK + TT+ Sbjct: 93 VEGGVQTEYSNVETSPFALMFQFEGDKKATRHV--LYNCSASRPSVGSSTIDKGDPNTTE 150 Query: 154 LKGSFIERDFDDRTKF-TADEDEPTFTKLVGDNWFNKVYEK 193 L S R D K T + EPT V D WFN VY+K Sbjct: 151 LSFSASPRPSDKAVKTKTRPDTEPT----VYDAWFNSVYDK 187 >gi|24686|lcl|protein:vir:79769 Length: 635 # NCBI annotation: terminase large subunit # Family: family:all:4877 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429607;genbank:gi:156564098;genbank:Ge neID:5525534 Length = 635 Score = 24.3 bits (51), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/65 (27%), Positives = 30/65 (46%) Query: 136 EEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADEDEPTFTKLVGDNWFNKVYEKPV 195 E + ET+ D +T K S E+ ++ + A D+P F WF + Y++P+ Sbjct: 16 ERQLWETEYDDLIVRTKKWARSTGEKFTEEELHYLAILDKPKFWAAETLKWFCRDYQEPM 75 Query: 196 TQPPA 200 Q A Sbjct: 76 LQEMA 80 >gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p06 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285676;genbank:gi:148727184;genbank:Ge neID:5247118 Length = 569 Score = 22.7 bits (47), Expect = 3.4, Method: Compositional matrix adjust. Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 85 KADIEGFPEVKDGVLDEKR 103 K D+E F V+DGV+ +KR Sbjct: 241 KDDLELFRNVRDGVVTDKR 259 >gi|5082|lcl|protein:vir:95133 Length: 511 # NCBI annotation: hypothetical protein ORF016 # Family: family:all:7264 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293423;genbank:gi:148912844;genbank:Ge neID:5228208 Length = 511 Score = 22.7 bits (47), Expect = 3.6, Method: Compositional matrix adjust. Identities = 11/37 (29%), Positives = 16/37 (43%) Query: 162 DFDDRTKFTADEDEPTFTKLVGDNWFNKVYEKPVTQP 198 D D F AD + +++ +F E P TQP Sbjct: 68 DLDASGGFNADFTKTNLARILQGFFFADARELPSTQP 104 >gi|13580|lcl|protein:vir:4706 Length: 133 # NCBI annotation: phi PVL ORF 13 homologue # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061638;genbank:gi:9635725;genbank:GeneID: 1262982 Length = 133 Score = 21.9 bits (45), Expect = 6.5, Method: Compositional matrix adjust. Identities = 16/80 (20%), Positives = 37/80 (46%) Query: 11 TVGVDNLVYAKVLQDDSSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGE 70 +GV N YA +L+D + + ++ ++++ + +E + D+ + A S+G+ Sbjct: 28 AIGVSNFYYAPILKDTENEWETGAGTRIRFLKEIEVDRPQDTEEDYGDDMVAATAVSNGK 87 Query: 71 TEVEIEVRGLSLSTKADIEG 90 V+ + KA + G Sbjct: 88 LSVKTTFVTVPADDKAFLNG 107 >gi|9232|lcl|protein:vir:97071 Length: 561 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453562;genbank:gi:84662597;genbank:GeneID :5142486 Length = 561 Score = 21.9 bits (45), Expect = 6.5, Method: Compositional matrix adjust. Identities = 8/19 (42%), Positives = 15/19 (78%) Query: 85 KADIEGFPEVKDGVLDEKR 103 K+D++ F V+DG++ +KR Sbjct: 233 KSDLDLFRNVRDGIVVDKR 251 >gi|19650|lcl|protein:vir:10361 Length: 561 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858953;genbank:gi:32128418;genbank:GeneID :2648405 Length = 561 Score = 21.6 bits (44), Expect = 7.7, Method: Compositional matrix adjust. Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 10/56 (17%) Query: 58 DNRKSEIAESDGETEVEIEVRGLSLSTKA----------DIEGFPEVKDGVLDEKR 103 +N S + E+ G E + LST+A D++ F ++DG++ +KR Sbjct: 196 ENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDDLDLFRSIRDGIVVDKR 251 >gi|3300|lcl|protein:vir:100942 Length: 499 # NCBI annotation: Gp2 # Family: family:all:1730 # MgeID: mge:1509 # MgeName: ST104 # Cross-refs: genbank:acc:YP_006405;genbank:gi:46358697;genbank:GeneID :2777092 Length = 499 Score = 21.2 bits (43), Expect = 9.3, Method: Compositional matrix adjust. Identities = 12/38 (31%), Positives = 17/38 (44%) Query: 56 WSDNRKSEIAESDGETEVEIEVRGLSLSTKADIEGFPE 93 ++D +K +I S E E E RG+ I PE Sbjct: 263 YTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPE 300 >gi|155|lcl|protein:vir:77595 Length: 499 # NCBI annotation: terminase large subunit # Family: family:all:1730 # MgeID: mge:46 # MgeName: P22 # Cross-refs: genbank:acc:YP_063734;genbank:gi:51236724;genbank:GeneID :2944239 Length = 499 Score = 21.2 bits (43), Expect = 9.5, Method: Compositional matrix adjust. Identities = 12/38 (31%), Positives = 17/38 (44%) Query: 56 WSDNRKSEIAESDGETEVEIEVRGLSLSTKADIEGFPE 93 ++D +K +I S E E E RG+ I PE Sbjct: 263 YTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPE 300 >gi|13374|lcl|protein:vir:9262 Length: 517 # NCBI annotation: gp2 # Family: family:all:1730 # MgeID: mge:164 # MgeName: ST64T # Cross-refs: genbank:acc:NP_720326;genbank:gi:24371583;genbank:GeneID :955800 Length = 517 Score = 21.2 bits (43), Expect = 9.5, Method: Compositional matrix adjust. Identities = 12/38 (31%), Positives = 17/38 (44%) Query: 56 WSDNRKSEIAESDGETEVEIEVRGLSLSTKADIEGFPE 93 ++D +K +I S E E E RG+ I PE Sbjct: 281 YTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPE 318 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.310 0.131 0.363 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,417 Number of Sequences: 514 Number of extensions: 4505 Number of successful extensions: 53 Number of sequences better than 100.0: 42 Number of HSP's better than 100.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 42 length of query: 202 length of database: 206,069 effective HSP length: 67 effective length of query: 135 effective length of database: 171,631 effective search space: 23170185 effective search space used: 23170185 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 35 (18.1 bits)