Query lcl|Aclame:protein:vir:6058|NCBI_annot:gpQ|genbank:acc:NP_878199;genbank:gi:33438898;genbank:GeneID:1457733 Match_columns 344 No_of_seqs 193 out of 1044 Neff 8.8 Searched_HMMs 1612 Date Sat Nov 30 14:18:23 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_1 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_1_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:5691 Length: 344 # 100.0 8E-104 5E-107 585.9 35.6 344 1-344 1-344 (344) 2 protein:vir:6058 Length: 344 # 100.0 1E-103 7E-107 584.9 36.1 344 1-344 1-344 (344) 3 protein:vir:2013 Length: 344 # 100.0 1E-102 6E-106 579.7 35.7 344 1-344 1-344 (344) 4 protein:vir:98567 Length: 340 100.0 7E-101 4E-104 569.6 35.2 340 1-343 1-340 (340) 5 protein:vir:79207 Length: 351 100.0 6E-100 4E-103 564.5 35.6 344 1-344 1-349 (351) 6 protein:vir:103971 Length: 376 100.0 8E-100 5E-103 563.8 34.7 344 1-344 26-374 (376) 7 protein:vir:1150 Length: 350 # 100.0 2.1E-99 1E-102 561.6 35.4 342 1-342 1-350 (350) 8 protein:vir:78191 Length: 351 100.0 4.3E-99 3E-102 559.9 35.4 344 1-344 1-349 (351) 9 protein:vir:79150 Length: 368 100.0 3.2E-98 2E-101 555.1 34.7 344 1-344 1-357 (368) 10 protein:vir:100328 Length: 346 100.0 5.6E-95 3.5E-98 537.3 35.8 341 1-343 1-346 (346) 11 protein:vir:267 Length: 348 # 100.0 3.6E-93 2.3E-96 527.4 34.5 337 1-344 1-345 (348) 12 protein:vir:78749 Length: 337 100.0 6E-91 3.7E-94 515.2 33.7 333 1-344 1-336 (337) 13 protein:vir:3780 Length: 345 # 100.0 1.2E-89 7.6E-93 508.0 33.4 334 1-341 1-345 (345) 14 protein:vir:3743 Length: 345 # 100.0 7.5E-89 4.6E-92 503.7 33.1 334 1-341 1-345 (345) 15 protein:vir:1884 Length: 424 # 100.0 2.2E-71 1.4E-74 407.9 28.7 325 1-344 23-358 (424) 16 protein:vir:189 Length: 424 # 100.0 3.5E-71 2.2E-74 406.8 28.9 326 1-344 17-358 (424) 17 protein:vir:100249 Length: 431 100.0 1.8E-70 1.1E-73 403.0 28.1 325 1-344 1-363 (431) 18 protein:vir:4509 Length: 424 # 100.0 6E-69 3.7E-72 394.6 28.5 326 1-344 17-356 (424) 19 protein:vir:4337 Length: 434 # 100.0 4.7E-69 2.9E-72 395.2 27.6 327 1-344 1-355 (434) 20 protein:vir:100150 Length: 437 100.0 6.1E-69 3.8E-72 394.6 26.9 329 1-344 1-352 (437) 21 protein:vir:93610 Length: 454 100.0 5.8E-68 3.6E-71 389.2 29.1 325 1-344 4-356 (454) 22 protein:vir:101648 Length: 518 100.0 8E-68 5E-71 388.4 27.3 327 1-344 1-355 (518) 23 protein:vir:7853 Length: 518 # 100.0 9.6E-68 6E-71 388.0 27.4 327 1-344 1-355 (518) 24 protein:vir:8100 Length: 466 # 100.0 1.5E-67 9.1E-71 387.0 27.1 329 1-344 1-386 (466) 25 protein:vir:3868 Length: 417 # 100.0 3.4E-67 2.1E-70 385.0 28.6 323 1-344 1-333 (417) 26 protein:vir:105064 Length: 421 100.0 2.5E-67 1.5E-70 385.7 27.8 324 1-344 6-344 (421) 27 protein:vir:1380 Length: 422 # 100.0 2.9E-67 1.8E-70 385.4 28.1 325 1-344 7-354 (422) 28 protein:vir:10362 Length: 432 100.0 8.9E-67 5.5E-70 382.7 29.0 325 1-344 10-354 (432) 29 protein:vir:5737 Length: 419 # 100.0 9.9E-67 6.1E-70 382.4 27.0 325 1-344 1-342 (419) 30 protein:vir:6240 Length: 457 # 100.0 1.3E-66 7.8E-70 381.9 27.1 328 1-344 1-357 (457) 31 protein:vir:102118 Length: 409 100.0 2E-66 1.2E-69 380.8 27.7 327 1-344 1-344 (409) 32 protein:vir:97060 Length: 432 100.0 1.4E-66 8.4E-70 381.7 26.7 325 1-344 10-354 (432) 33 protein:vir:81072 Length: 432 100.0 3.3E-66 2E-69 379.6 28.7 325 1-344 1-354 (432) 34 protein:vir:79984 Length: 441 100.0 3.3E-66 2E-69 379.6 28.6 319 1-344 14-362 (441) 35 protein:vir:9408 Length: 441 # 100.0 3.3E-66 2E-69 379.6 28.6 319 1-344 14-362 (441) 36 protein:vir:4454 Length: 414 # 100.0 6.4E-66 4E-69 378.0 28.9 325 1-344 1-341 (414) 37 protein:vir:98396 Length: 441 100.0 4.1E-66 2.6E-69 379.0 27.7 319 1-344 29-362 (441) 38 protein:vir:4194 Length: 540 # 100.0 1E-65 6.2E-69 376.9 29.4 319 1-344 6-371 (540) 39 protein:vir:1082 Length: 359 # 100.0 7.1E-66 4.4E-69 377.8 28.4 315 1-344 1-329 (359) 40 protein:vir:81152 Length: 411 100.0 8.5E-66 5.2E-69 377.3 28.5 325 1-344 1-346 (411) 41 protein:vir:94666 Length: 723 100.0 6.9E-66 4.3E-69 377.8 27.6 314 1-344 1-345 (723) 42 protein:vir:101647 Length: 460 100.0 6.5E-66 4E-69 378.0 27.4 337 1-344 1-392 (460) 43 protein:vir:4156 Length: 542 # 100.0 1.8E-65 1.1E-68 375.6 29.3 320 1-344 6-373 (542) 44 protein:vir:102080 Length: 429 100.0 1E-65 6.4E-69 376.9 27.7 328 1-344 1-352 (429) 45 protein:vir:107605 Length: 432 100.0 1.9E-65 1.2E-68 375.4 29.2 326 1-344 11-362 (432) 46 protein:vir:105002 Length: 432 100.0 1.9E-65 1.2E-68 375.4 29.2 326 1-344 11-362 (432) 47 protein:vir:102855 Length: 432 100.0 1.9E-65 1.2E-68 375.4 29.2 326 1-344 11-362 (432) 48 protein:vir:1326 Length: 457 # 100.0 1.2E-65 7.7E-69 376.4 27.8 328 1-344 1-364 (457) 49 protein:vir:80333 Length: 419 100.0 2.1E-65 1.3E-68 375.2 28.0 324 1-344 1-341 (419) 50 protein:vir:1431 Length: 419 # 100.0 2.3E-65 1.4E-68 374.9 27.9 325 1-344 1-341 (419) 51 protein:vir:8317 Length: 409 # 100.0 3.4E-65 2.1E-68 374.0 26.5 319 1-344 32-368 (409) 52 protein:vir:1266 Length: 416 # 100.0 2.1E-64 1.3E-67 369.6 29.2 322 1-344 6-340 (416) 53 protein:vir:483 Length: 413 # 100.0 2.8E-64 1.7E-67 369.0 28.8 326 1-344 4-340 (413) 54 protein:vir:9702 Length: 406 # 100.0 2E-64 1.2E-67 369.8 27.6 319 1-344 1-332 (406) 55 protein:vir:4598 Length: 416 # 100.0 3.3E-64 2.1E-67 368.6 28.3 319 1-344 4-337 (416) 56 protein:vir:81095 Length: 416 100.0 3.3E-64 2.1E-67 368.6 28.3 319 1-344 4-337 (416) 57 protein:vir:93943 Length: 409 100.0 2.8E-64 1.7E-67 369.0 27.8 320 1-344 1-337 (409) 58 protein:vir:8418 Length: 409 # 100.0 1E-63 6.4E-67 365.9 28.4 325 1-344 1-342 (409) 59 protein:vir:94426 Length: 409 100.0 5.5E-63 3.4E-66 361.9 28.4 320 1-344 1-337 (409) 60 protein:vir:2683 Length: 412 # 100.0 3.6E-63 2.3E-66 362.9 27.4 318 1-344 4-340 (412) 61 protein:vir:81218 Length: 423 100.0 5.8E-63 3.6E-66 361.8 27.7 328 1-344 7-365 (423) 62 protein:vir:96980 Length: 409 100.0 9.3E-63 5.8E-66 360.7 27.7 320 1-344 1-337 (409) 63 protein:vir:102727 Length: 945 100.0 3.4E-62 2.1E-65 357.5 28.8 333 1-344 71-445 (945) 64 protein:vir:80796 Length: 574 100.0 7.6E-63 4.7E-66 361.1 24.8 336 1-344 41-430 (574) 65 protein:vir:80644 Length: 551 100.0 9.6E-62 6E-65 355.1 29.8 337 1-344 45-426 (551) 66 protein:vir:4854 Length: 386 # 100.0 9.7E-62 6E-65 355.1 29.0 312 1-344 1-332 (386) 67 protein:vir:63755 Length: 547 100.0 1.2E-61 7.4E-65 354.6 28.2 335 1-344 31-422 (547) 68 protein:vir:7407 Length: 392 # 100.0 1.3E-61 8E-65 354.4 27.7 312 1-344 6-338 (392) 69 protein:vir:100187 Length: 385 100.0 2.6E-61 1.6E-64 352.8 28.3 314 1-344 4-332 (385) 70 protein:vir:96579 Length: 576 100.0 1.3E-60 7.8E-64 349.0 28.7 330 1-344 43-432 (576) 71 protein:vir:3843 Length: 397 # 100.0 2.3E-60 1.4E-63 347.6 28.8 313 1-344 1-329 (397) 72 protein:vir:100691 Length: 535 100.0 2E-60 1.2E-63 347.9 27.9 333 1-344 13-421 (535) 73 protein:vir:3153 Length: 467 # 100.0 2.3E-60 1.5E-63 347.5 28.1 311 30-344 1-368 (467) 74 protein:vir:4828 Length: 382 # 100.0 3.2E-60 2E-63 346.7 28.7 313 1-344 1-329 (382) 75 protein:vir:100882 Length: 383 100.0 4E-60 2.5E-63 346.2 28.7 315 1-344 4-332 (383) 76 protein:vir:3989 Length: 392 # 100.0 3.2E-60 2E-63 346.8 27.8 312 1-344 3-338 (392) 77 protein:vir:1023 Length: 392 # 100.0 3.2E-60 2E-63 346.8 27.8 312 1-344 3-338 (392) 78 protein:vir:4995 Length: 384 # 100.0 3.2E-60 2E-63 346.7 25.6 317 1-344 1-339 (384) 79 protein:vir:99452 Length: 651 100.0 5.4E-60 3.3E-63 345.5 25.1 332 1-344 1-460 (651) 80 protein:vir:95599 Length: 563 100.0 6.6E-59 4.1E-62 339.6 30.5 333 1-344 46-433 (563) 81 protein:vir:99312 Length: 563 100.0 6.6E-59 4.1E-62 339.6 30.5 333 1-344 46-433 (563) 82 protein:vir:104259 Length: 403 100.0 2E-59 1.2E-62 342.4 25.1 321 1-344 4-335 (403) 83 protein:vir:4952 Length: 386 # 100.0 1.4E-58 9E-62 337.7 28.3 312 1-344 1-331 (386) 84 protein:vir:960 Length: 413 # 100.0 3E-58 1.8E-61 336.0 27.5 321 1-344 4-354 (413) 85 protein:vir:9359 Length: 348 # 100.0 3E-57 1.8E-60 330.5 26.6 270 52-344 1-276 (348) 86 protein:vir:80134 Length: 403 100.0 2E-57 1.3E-60 331.4 24.0 322 1-344 1-336 (403) 87 protein:vir:98853 Length: 219 100.0 1.2E-57 7.2E-61 332.7 22.5 210 134-343 1-219 (219) 88 protein:vir:95378 Length: 406 100.0 1.5E-56 9.4E-60 326.6 26.9 321 1-344 1-339 (406) 89 protein:vir:6210 Length: 394 # 100.0 2.5E-56 1.6E-59 325.4 25.5 312 1-344 1-324 (394) 90 protein:vir:78641 Length: 278 100.0 2.7E-55 1.7E-58 319.7 26.2 270 52-344 1-276 (278) 91 protein:vir:79772 Length: 648 100.0 7.5E-52 4.6E-55 300.9 30.1 335 1-344 17-420 (648) 92 protein:vir:95965 Length: 385 100.0 7.3E-51 4.5E-54 295.5 24.0 306 1-344 1-320 (385) 93 protein:vir:9507 Length: 395 # 100.0 1.5E-50 9.2E-54 293.8 24.7 306 1-344 1-318 (395) 94 protein:vir:100650 Length: 395 100.0 1.5E-50 9.2E-54 293.8 24.7 306 1-344 1-318 (395) 95 protein:vir:101289 Length: 395 100.0 1.5E-50 9.2E-54 293.8 24.7 306 1-344 1-318 (395) 96 protein:vir:78310 Length: 376 100.0 9E-49 5.6E-52 284.0 25.7 307 1-344 1-320 (376) 97 protein:vir:9641 Length: 395 # 100.0 4E-48 2.5E-51 280.5 23.7 307 1-344 1-330 (395) 98 protein:vir:98643 Length: 395 100.0 3.7E-47 2.3E-50 275.2 24.3 313 1-344 1-330 (395) 99 protein:vir:4089 Length: 395 # 100.0 8.2E-47 5.1E-50 273.3 22.6 308 1-344 1-329 (395) 100 protein:vir:93867 Length: 378 100.0 3.8E-45 2.4E-48 264.1 21.8 291 1-344 1-311 (378) 101 protein:vir:1661 Length: 378 # 100.0 2.5E-44 1.5E-47 259.6 23.2 291 1-344 1-304 (378) 102 protein:vir:94002 Length: 378 100.0 3.7E-44 2.3E-47 258.7 23.2 291 1-344 1-304 (378) 103 protein:vir:4698 Length: 251 # 100.0 9E-43 5.6E-46 251.1 19.6 234 1-250 1-251 (251) 104 protein:vir:858 Length: 378 # 100.0 4.1E-42 2.6E-45 247.5 22.6 291 1-344 1-304 (378) 105 protein:vir:94869 Length: 378 100.0 4.5E-42 2.8E-45 247.3 22.0 291 1-344 1-306 (378) 106 protein:vir:5249 Length: 437 # 99.5 8.3E-15 5.1E-18 97.8 22.9 324 1-344 1-362 (437) 107 protein:vir:77981 Length: 448 99.3 4.6E-12 2.9E-15 82.7 21.9 311 1-344 1-381 (448) 108 protein:vir:79511 Length: 448 99.3 6.5E-12 4E-15 81.9 22.7 311 1-344 1-379 (448) 109 protein:vir:79647 Length: 435 99.2 1.1E-11 6.8E-15 80.7 21.3 317 1-344 5-369 (435) 110 protein:vir:107742 Length: 537 99.1 2.3E-10 1.5E-13 73.4 23.5 320 1-344 48-440 (537) 111 protein:vir:94049 Length: 532 99.1 1.8E-10 1.1E-13 74.1 21.2 323 1-344 23-427 (532) 112 protein:vir:107880 Length: 491 99.0 1.1E-09 6.8E-13 69.7 22.0 306 1-344 1-359 (491) 113 protein:vir:80040 Length: 461 98.9 2.3E-09 1.4E-12 67.9 22.5 323 1-344 1-393 (461) 114 protein:vir:108215 Length: 469 98.9 1.3E-08 7.9E-12 63.9 25.4 308 1-344 1-387 (469) 115 protein:vir:104338 Length: 422 98.9 2.3E-09 1.4E-12 68.0 19.9 311 1-344 1-357 (422) 116 protein:vir:103860 Length: 528 98.9 2.6E-08 1.6E-11 62.2 25.7 323 1-344 1-374 (528) 117 protein:vir:79063 Length: 491 98.8 1.2E-08 7.3E-12 64.1 22.1 314 1-344 1-354 (491) 118 protein:vir:389 Length: 530 # 98.8 1.2E-08 7.3E-12 64.0 21.5 323 1-344 1-435 (530) 119 protein:vir:99563 Length: 862 98.8 2E-08 1.3E-11 62.7 22.4 326 1-344 39-472 (862) 120 protein:vir:79538 Length: 502 98.7 4E-09 2.5E-12 66.6 17.9 318 1-344 11-424 (502) 121 protein:vir:99232 Length: 526 98.7 8.1E-08 5E-11 59.5 26.0 323 1-344 1-374 (526) 122 protein:vir:107662 Length: 427 98.7 1.4E-08 9E-12 63.6 20.4 310 1-344 1-357 (427) 123 protein:vir:96738 Length: 505 98.7 2.6E-09 1.6E-12 67.7 16.3 320 1-344 1-433 (505) 124 protein:vir:1986 Length: 512 # 98.7 1E-07 6.5E-11 58.9 26.1 323 1-344 1-372 (512) 125 protein:vir:98816 Length: 446 98.7 2.6E-08 1.6E-11 62.2 20.6 327 1-344 3-406 (446) 126 protein:vir:79233 Length: 526 98.6 1.8E-07 1.1E-10 57.5 26.1 323 1-344 1-374 (526) 127 protein:vir:6382 Length: 553 # 98.5 2.9E-08 1.8E-11 61.9 16.4 322 1-344 1-455 (553) 128 protein:vir:3420 Length: 533 # 98.5 6.7E-08 4.1E-11 59.9 18.3 324 1-344 1-438 (533) 129 protein:vir:99853 Length: 488 98.5 4.4E-07 2.7E-10 55.4 24.9 311 1-344 1-348 (488) 130 protein:vir:95542 Length: 548 98.4 1.8E-08 1.1E-11 63.1 13.0 320 1-344 11-427 (548) 131 protein:vir:96068 Length: 765 98.4 7.3E-07 4.5E-10 54.2 21.7 323 1-344 37-444 (765) 132 protein:vir:10321 Length: 495 98.1 3.8E-06 2.3E-09 50.3 19.8 318 1-344 1-420 (495) 133 protein:vir:78161 Length: 355 97.9 1.1E-05 6.6E-09 47.8 18.7 224 112-344 1-257 (355) 134 protein:vir:9751 Length: 422 # 97.7 2.2E-05 1.3E-08 46.2 16.9 286 35-344 1-371 (422) 135 protein:vir:9568 Length: 410 # 97.6 4.3E-05 2.7E-08 44.5 18.9 287 1-344 1-358 (410) 136 protein:vir:94742 Length: 409 97.5 5E-05 3.1E-08 44.2 19.2 288 35-344 1-371 (409) 137 protein:vir:1634 Length: 409 # 97.3 9E-05 5.6E-08 42.8 19.0 280 35-344 1-382 (409) 138 protein:vir:95254 Length: 488 97.2 0.00012 7.6E-08 42.0 18.9 315 1-344 1-404 (488) 139 protein:vir:80680 Length: 441 96.2 0.00088 5.5E-07 37.3 21.7 288 1-344 31-374 (441) 140 protein:vir:5839 Length: 533 # 95.9 0.0012 7.6E-07 36.5 17.4 323 1-344 20-406 (533) 141 protein:vir:99916 Length: 504 94.8 0.0034 2.1E-06 34.1 19.5 308 16-344 1-408 (504) 142 protein:vir:4073 Length: 279 # 94.2 0.0017 1.1E-06 35.7 9.5 257 23-344 1-269 (279) 143 protein:vir:105782 Length: 449 94.2 0.005 3.1E-06 33.2 13.6 303 1-344 1-388 (449) 144 protein:vir:7768 Length: 484 # 93.4 0.0076 4.7E-06 32.2 17.8 304 1-344 1-395 (484) 145 protein:vir:106716 Length: 698 93.2 0.0083 5.1E-06 32.0 17.6 321 1-344 1-467 (698) 146 protein:vir:98444 Length: 434 92.5 0.011 6.9E-06 31.3 18.0 274 53-344 1-360 (434) 147 protein:vir:8184 Length: 474 # 91.6 0.015 9.4E-06 30.6 17.3 316 1-344 12-412 (474) 148 protein:vir:78589 Length: 695 91.0 0.018 1.1E-05 30.2 18.0 321 1-344 1-467 (695) 149 protein:vir:2427 Length: 485 # 90.4 0.021 1.3E-05 29.8 18.8 296 1-344 40-396 (485) 150 protein:vir:99522 Length: 470 90.3 0.022 1.4E-05 29.7 23.2 318 1-344 19-400 (470) 151 protein:vir:104082 Length: 485 87.6 0.038 2.4E-05 28.4 16.2 301 1-344 1-396 (485) 152 protein:vir:101541 Length: 694 80.9 0.09 5.6E-05 26.3 18.8 321 1-344 1-466 (694) 153 protein:vir:95806 Length: 440 78.0 0.12 7.4E-05 25.6 22.7 315 1-344 6-374 (440) 154 protein:vir:4223 Length: 486 # 75.6 0.14 9E-05 25.2 18.8 294 1-344 40-396 (486) 155 protein:vir:103219 Length: 201 74.0 0.1 6.4E-05 26.0 6.9 123 208-344 1-136 (201) 156 protein:vir:4898 Length: 502 # 71.9 0.19 0.00012 24.5 23.3 316 1-344 49-421 (502) 157 protein:vir:105889 Length: 474 71.7 0.19 0.00012 24.5 22.8 303 1-344 51-404 (474) 158 protein:vir:94101 Length: 474 71.7 0.19 0.00012 24.5 22.8 303 1-344 51-404 (474) 159 protein:vir:3609 Length: 452 # 70.7 0.21 0.00013 24.3 25.2 286 1-344 49-380 (452) 160 protein:vir:94709 Length: 522 70.6 0.21 0.00013 24.3 15.4 319 1-344 1-424 (522) 161 protein:vir:9306 Length: 511 # 68.4 0.24 0.00015 24.0 23.7 302 1-344 74-431 (511) 162 protein:vir:96494 Length: 501 65.5 0.28 0.00018 23.6 22.4 303 1-344 67-420 (501) 163 protein:vir:93747 Length: 472 64.8 0.29 0.00018 23.5 23.2 296 1-344 36-397 (472) 164 protein:vir:2500 Length: 501 # 64.3 0.3 0.00019 23.4 16.7 281 1-344 54-414 (501) 165 protein:vir:95899 Length: 474 63.3 0.32 0.0002 23.3 20.7 292 1-344 60-400 (474) 166 protein:vir:96266 Length: 474 63.3 0.32 0.0002 23.3 20.7 292 1-344 60-400 (474) 167 protein:vir:78537 Length: 480 62.2 0.34 0.00021 23.2 22.3 295 28-344 1-387 (480) 168 protein:vir:733 Length: 453 # 59.3 0.39 0.00024 22.8 24.7 297 1-344 49-386 (453) 169 protein:vir:78805 Length: 511 59.0 0.4 0.00025 22.8 23.6 302 1-344 74-431 (511) 170 protein:vir:96366 Length: 511 59.0 0.4 0.00025 22.8 23.6 302 1-344 74-431 (511) 171 protein:vir:97336 Length: 492 56.6 0.45 0.00028 22.5 20.4 289 1-344 77-417 (492) 172 protein:vir:2732 Length: 501 # 54.1 0.51 0.00032 22.2 22.7 302 1-344 67-420 (501) 173 protein:vir:2341 Length: 488 # 53.6 0.52 0.00032 22.1 15.8 301 1-344 1-402 (488) 174 protein:vir:99781 Length: 511 53.1 0.54 0.00033 22.1 22.7 302 1-344 74-431 (511) 175 protein:vir:96839 Length: 474 52.4 0.56 0.00034 22.0 22.8 288 1-344 59-404 (474) 176 protein:vir:78227 Length: 480 49.6 0.63 0.00039 21.7 22.1 285 28-344 1-387 (480) 177 protein:vir:97171 Length: 512 48.5 0.67 0.00041 21.5 24.4 303 1-344 74-432 (512) 178 protein:vir:94805 Length: 492 48.3 0.68 0.00042 21.5 23.0 290 1-344 77-417 (492) 179 protein:vir:79043 Length: 479 47.8 0.69 0.00043 21.5 23.4 305 1-344 32-413 (479) 180 protein:vir:102426 Length: 631 47.1 0.71 0.00044 21.4 15.8 324 1-344 38-460 (631) 181 protein:vir:3964 Length: 453 # 44.1 0.82 0.00051 21.1 26.4 287 1-344 50-381 (453) 182 protein:vir:1236 Length: 483 # 44.0 0.82 0.00051 21.1 21.4 289 1-344 68-408 (483) 183 protein:vir:8654 Length: 629 # 43.5 0.84 0.00052 21.0 17.2 339 1-344 1-455 (629) 184 protein:vir:96240 Length: 511 43.4 0.85 0.00052 21.0 23.8 301 1-344 74-431 (511) 185 protein:vir:106639 Length: 481 42.4 0.88 0.00055 20.9 24.9 308 1-344 43-409 (481) 186 protein:vir:99088 Length: 629 40.8 0.96 0.00059 20.7 17.0 339 1-344 1-455 (629) 187 protein:vir:7987 Length: 456 # 40.8 0.96 0.00059 20.7 16.9 295 1-344 32-390 (456) 188 protein:vir:106491 Length: 646 39.9 1 0.00062 20.6 13.2 334 1-344 1-396 (646) 189 protein:vir:3648 Length: 695 # 38.5 1.1 0.00066 20.4 18.0 325 1-344 46-467 (695) 190 protein:vir:95113 Length: 474 38.2 1.1 0.00067 20.4 23.7 292 1-344 54-400 (474) 191 protein:vir:38 Length: 496 # N 32.9 1.4 0.00086 19.8 22.8 300 1-344 55-430 (496) 192 protein:vir:96179 Length: 468 32.6 1.4 0.00088 19.8 23.3 292 1-344 59-405 (468) 193 protein:vir:107112 Length: 478 31.9 1.5 0.00091 19.7 22.3 292 1-344 59-405 (478) 194 protein:vir:103951 Length: 511 31.4 1.5 0.00093 19.6 24.3 312 1-344 49-431 (511) 195 protein:vir:105461 Length: 470 29.3 1.7 0.001 19.4 22.2 296 1-344 38-403 (470) 196 protein:vir:102602 Length: 456 27.4 1.8 0.0011 19.1 18.7 305 1-344 1-390 (456) 197 protein:vir:105819 Length: 456 27.4 1.8 0.0011 19.1 18.7 305 1-344 1-390 (456) 198 protein:vir:105292 Length: 478 26.6 1.9 0.0012 19.0 22.7 286 1-344 59-405 (478) 199 protein:vir:94498 Length: 474 26.6 1.9 0.0012 19.0 23.4 287 1-344 54-400 (474) 200 protein:vir:97447 Length: 474 26.6 1.9 0.0012 19.0 23.4 287 1-344 54-400 (474) 201 protein:vir:98265 Length: 524 25.4 2.1 0.0013 18.9 22.0 329 1-344 28-453 (524) 202 protein:vir:4782 Length: 522 # 25.3 2.1 0.0013 18.9 17.7 301 1-344 50-448 (522) 203 protein:vir:9871 Length: 429 # 24.3 2.2 0.0014 18.7 25.4 280 1-344 34-363 (429) 204 protein:vir:99072 Length: 479 23.8 2.3 0.0014 18.7 16.8 288 1-344 41-384 (479) 205 protein:vir:5961 Length: 503 # 21.8 2.5 0.0016 18.4 24.0 307 1-344 38-417 (503) No 1 >protein:vir:5691 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839850;genbank:gi:30065705;genbank:GeneID:1260599 Probab=100.00 E-value=7.5e-104 Score=585.95 Aligned_cols=344 Identities=99% Similarity=1.503 Sum_probs=333.0 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) |||||++++++..+..+++++.+++|+||+|++||+++++++|++|+.+|+|++||+++..|+++.|++++|++||+.|+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~s~i~~k~ 80 (344) T protein:vir:56 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) T ss_pred CCCCCCCCCchhhHHhhcCCCceEEEEcCCceeecCcchhhhHHHhhhcCccccCCCCHHHHHHHHhhhhhhCccceehh Confidence 99999999988888888899999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCceEEEEcCCceEEEEecccE Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPGSV 160 (344) Q Consensus 81 ~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~y~~~~~~~~~~~~~~eV 160 (344) |.++.+++||+++|+++|++++.|++++||||++++||..|++++|+|+++.+|++..+++.||++..+++.+.|+++|| T Consensus 81 n~l~~~~~Pnp~~t~~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~v~~~~~~~~~~~~~~~g~~~~~~~~dI 160 (344) T protein:vir:56 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPGSV 160 (344) T ss_pred hhHHhhcCCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCceeEEeecCCEEEEEecCCeEEEEcCccE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhcccccccc Q lcl|Aclame:pro 161 FHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNL 240 (344) Q Consensus 161 iH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~ 240 (344) ||+|.+++.+++||+||+.++++++.++.++++|+++||+||++|+|||+++++.+++|+++++|+.|++.+|++|.+.+ T Consensus 161 iHir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~Il~~~d~~ls~e~~~~lk~~~~~~~g~~~~r~l 240 (344) T protein:vir:56 161 FHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNL 240 (344) T ss_pred EEECCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCCCCccce Confidence 99999999999999999999999999999999999999999999999999998889999999999999988887776667 Q ss_pred ccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 241 FLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRI 320 (344) Q Consensus 241 ~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~i 320 (344) ++..++++++|++++|++++++|+||+|+++++++|||++|||||+++|+.++++++++|+|++.+.|+++||+|++++| T Consensus 241 ~l~~p~g~~~G~~~~pis~~~~d~qf~e~k~~s~~eIa~afrVPp~llGi~~~~t~~~~n~eq~~~~f~~~tL~Pl~~~i 320 (344) T protein:vir:56 241 FLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRI 320 (344) T ss_pred EEecCCCCccceeEEEcCCChHHHHHHHHHHhhHHHHHHHhCCCHHHhccCCCCCCccccHHHHHHHHHHHHHHHHHHHH Confidence 77788889999999999999999999999999999999999999999999887788899999999999999999999999 Q ss_pred HHHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 321 REINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 321 eeln~~L~~~~~~f~~y~l~~~~~ 344 (344) |++|++|+.++++|++|+|+.||| T Consensus 321 e~~n~~l~~~~~~F~~y~l~~~~~ 344 (344) T protein:vir:56 321 REINGWIGQEVIRFKNYSLDTDNG 344 (344) T ss_pred HHHHhhhccccccCCCccccccCC Confidence 999999999999999999999999 No 2 >protein:vir:6058 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878199;genbank:gi:33438898;genbank:GeneID:1457733 Probab=100.00 E-value=1.2e-103 Score=584.86 Aligned_cols=344 Identities=100% Similarity=1.514 Sum_probs=335.0 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) |||||++..++..++.+.+++.+.+|+||+|++||+++++++|++|+.+|.|++||+++..|+++.|++++|.+||+.|+ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~~~i~~k~ 80 (344) T protein:vir:60 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) T ss_pred CCcccCCCCCchHHhhcCCcCcEEEEEcCCceeecCCcchhHHHHhhhcCccccCCCCHHHHHHHHHhhhhhccchhhhh Confidence 99999999999988889999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCceEEEEcCCceEEEEecccE Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPGSV 160 (344) Q Consensus 81 ~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~y~~~~~~~~~~~~~~eV 160 (344) |.++.+++||+++|+++|++++.|++++||||++++||..|+|++|+|+++.+|++..+++.||++..++..+.|+++|| T Consensus 81 n~l~~~~~Pn~~~t~~~f~~~~~d~ll~Gnay~~i~rn~~G~~~~L~~l~~~~vr~~~~~~~~~~v~~~~~~~~~~~~eI 160 (344) T protein:vir:60 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPGSV 160 (344) T ss_pred hHHHhhccCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEcCcceEEEeecCCeEEEEccCCeEEEEcCccE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhcccccccc Q lcl|Aclame:pro 161 FHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNL 240 (344) Q Consensus 161 iH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~ 240 (344) ||+|.+++.+++||+||+.++++++.++.++++|+++||+||++|+|||+++++.+++|+++++++.|++.+|++|.+.+ T Consensus 161 iHir~~~~~~~~yGlsp~~~a~~si~l~~~a~~~~~~~f~NG~~pg~il~~~~~~ls~e~~~~ik~~~~~~~g~~~~r~~ 240 (344) T protein:vir:60 161 FHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNL 240 (344) T ss_pred EEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHHHHHHHHHHHHHhcCCCCCcce Confidence 99999999999999999999999999999999999999999999999999998889999999999999998888888888 Q ss_pred ccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 241 FLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRI 320 (344) Q Consensus 241 ~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~i 320 (344) ++..++++++|++|+|++.+++|+||+|+++++++|||++|||||+++|+.++++++++|+|++.+.|+++||+||+++| T Consensus 241 ~l~~p~g~~~g~~~~pis~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~L~Pl~~~~ 320 (344) T protein:vir:60 241 FLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRI 320 (344) T ss_pred EEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhcccCCCCCccccHHHHHHHHHHHHHHHHHHHH Confidence 88889999999999999999999999999999999999999999999999888778899999999999999999999999 Q ss_pred HHHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 321 REINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 321 eeln~~L~~~~~~f~~y~l~~~~~ 344 (344) |+||+|||.++++|++|+||.||+ T Consensus 321 e~ln~~lg~~~i~F~~~~l~~~d~ 344 (344) T protein:vir:60 321 REINGWLGQEVIRFKNYSLDTDNG 344 (344) T ss_pred HHHHHhcCCcccccCccccCCCCC Confidence 999999999999999999999999 No 3 >protein:vir:2013 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046757;genbank:gi:9630328;genbank:GeneID:1261529 Probab=100.00 E-value=1e-102 Score=579.68 Aligned_cols=344 Identities=99% Similarity=1.496 Sum_probs=334.3 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) |||||++++++..++.+++++.+++|+||+|++||+++++++|++|+.+|.|++||+++..|+++.+++++|++||+.|+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~~~i~~k~ 80 (344) T protein:vir:20 1 MSKKKGKTPQPAAKTMTASGPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) T ss_pred CCcccCCCCcchhhhhhccCCceEEEEcCCceEecCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhhhhCccceehh Confidence 99999999998888889999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCceEEEEcCCceEEEEecccE Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPGSV 160 (344) Q Consensus 81 ~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~y~~~~~~~~~~~~~~eV 160 (344) |.++.+++||+++++++|++++.|++++||||++++||..|+|++|+|+++.+|++..+++.||++..++..+.|+++|| T Consensus 81 n~l~~~~~Pn~~lt~~~f~~~~~d~ll~Gnay~~i~rn~~G~~~~L~pl~~~~vr~~~~~~~~~~~~~~~~~~~~~~~eI 160 (344) T protein:vir:20 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPGSV 160 (344) T ss_pred hhHHHhccCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEcCCceeEeeecCCEEEEEccCCeEEEEcCccE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhcccccccc Q lcl|Aclame:pro 161 FHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNL 240 (344) Q Consensus 161 iH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~ 240 (344) ||+|.+++.+++||+||+.++++++.++.++++|+++||+||++|+|||+++++.+++|+++++++.|++.+|++|.+.+ T Consensus 161 iHir~~~~~~~~yGls~~~~a~~si~l~~~a~~~~~~~f~NGa~p~~Il~~~d~~l~~e~~~~ik~~~~~~~g~~n~r~l 240 (344) T protein:vir:20 161 FHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNL 240 (344) T ss_pred EEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHHHHHHHHHHHHHhcCCCCccce Confidence 99999999999999999999999999999999999999999999999999998889999999999999998888887788 Q ss_pred ccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 241 FLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRI 320 (344) Q Consensus 241 ~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~i 320 (344) ++..++++++|++|+|++.+++|+||+|+++++++|||++|||||+++|+.++++++++|+|++.+.|+++||+|++++| T Consensus 241 ~l~~p~g~~~gi~~~pis~~~~d~qf~e~k~~s~~eIa~af~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~l~P~~~~~ 320 (344) T protein:vir:20 241 FLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRI 320 (344) T ss_pred EEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhccCCCCCCccccHHHHHHHHHHHHHHHHHHHH Confidence 88889999999999999999999999999999999999999999999999888788899999999999999999999999 Q ss_pred HHHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 321 REINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 321 eeln~~L~~~~~~f~~y~l~~~~~ 344 (344) |+||++||.++++|++|+|+.+|- T Consensus 321 e~in~~lg~~~i~F~~~~l~~~d~ 344 (344) T protein:vir:20 321 REINGWLGQEVIRFKNYSLDTDND 344 (344) T ss_pred HHHHHhcCCcccccCccccccCCC Confidence 999999999999999999999999 No 4 >protein:vir:98567 Length: 340 # NCBI annotation: gp1 # Family: family:all:196 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958056;genbank:gi:41057353;genbank:GeneID:2744238 Probab=100.00 E-value=7.2e-101 Score=569.61 Aligned_cols=340 Identities=77% Similarity=1.272 Sum_probs=327.1 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) |||||+++.++. .+.++..+++|+||+|++||+++++++|+||+.+|.|++||+++..|+++.+++++|++||+.|+ T Consensus 1 m~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~la~l~~a~~~h~s~i~~k~ 77 (340) T protein:vir:98 1 MSKRKPRKAVAM---TASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKR 77 (340) T ss_pred CCCCCCCccccc---cccCccceeEEEcCCceeecCcchhhhhhhhhhcCceecCCCCHHHHHHHHHhccccchhhhhhh Confidence 999998865543 33455678899999999999999999999999999999999999999999999999999999999 Q ss_pred hhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCceEEEEcCCceEEEEecccE Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPGSV 160 (344) Q Consensus 81 ~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~y~~~~~~~~~~~~~~eV 160 (344) |.++.+++||+++++++|++++.|++++||||++++||..|++++|+|+++.+|++..+++.||++..++..+.|+++|| T Consensus 78 n~l~~~~~Pn~~lt~~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~~~~~~~~~~~~~~~~~~~~~eV 157 (340) T protein:vir:98 78 NVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVENFTQPHEFAPDTV 157 (340) T ss_pred hHHhhccCCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCceEEEcccCcEEEEEecCCeEEEEccccE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhcccccccc Q lcl|Aclame:pro 161 FHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNL 240 (344) Q Consensus 161 iH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~ 240 (344) ||+|.+++.+++||+||+.++++++.++.++++|+++||+||++|+|||+++++.+++|+++++|+.|++++|.+|++++ T Consensus 158 iHir~~~~~~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~NGa~pg~il~~~~~~ls~e~~~~lk~~~~~~~G~~n~~~~ 237 (340) T protein:vir:98 158 FHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNL 237 (340) T ss_pred EEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCccccCce Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999 Q ss_pred ccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 241 FLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRI 320 (344) Q Consensus 241 ~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~i 320 (344) +|+.++++++|++|+|++.+++|+||+|+++++++|||++|||||+++|+.++++++++|+|++.+.|+++||+|++++| T Consensus 238 ~vl~~~g~~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~Pl~~~i 317 (340) T protein:vir:98 238 FFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRF 317 (340) T ss_pred eEecCCCCccceEEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhcccCCCCCccccHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999887788899999999999999999999999 Q ss_pred HHHHHhhCCcceeccccccCCCC Q lcl|Aclame:pro 321 REINGWLGQEVIRFKNYSLDTDN 343 (344) Q Consensus 321 eeln~~L~~~~~~f~~y~l~~~~ 343 (344) ||+|++|+.+++||++|+|+-.| T Consensus 318 ee~n~~L~~e~~rF~~~~l~~~d 340 (340) T protein:vir:98 318 REVNDWLGMEVIRFKEYTLDNPE 340 (340) T ss_pred HHHHhcccccccccCccccccCC Confidence 99999999999999999999999 No 5 >protein:vir:79207 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111036;genbank:gi:134288763;genbank:GeneID:4960726 Probab=100.00 E-value=6.3e-100 Score=564.45 Aligned_cols=344 Identities=54% Similarity=0.981 Sum_probs=328.5 Q ss_pred CCCCCCCCCCCchh-----hccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAK-----KMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSP 75 (344) Q Consensus 1 msk~~~~~~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~ 75 (344) |||||+++....++ ..+.+...+.+|+||||++||+.+++++|++|+.+|.|++||+++..|+++.+++++|++| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~~~~~h~~~ 80 (351) T protein:vir:79 1 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSSA 80 (351) T ss_pred CCCCCCCCCCCCCCCCchhhhhcccceeEEEEcCCceeecCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhHhhhhh Confidence 99999987655433 3344456788999999999999999999999999999999999999999999999999999 Q ss_pred hhhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCceEEEEcCCceEEEE Q lcl|Aclame:pro 76 IYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAF 155 (344) Q Consensus 76 i~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~y~~~~~~~~~~~ 155 (344) |+.|+|.++.+++||+++++++|++++.|++++||||++++||..|++++|+|+++.+|++..+.+.||++..+++.++| T Consensus 81 l~~k~n~l~~~~~Pnp~~t~~~f~~~v~d~ll~Gnay~~~~r~~~G~~~~L~~l~~~~v~~~~~~~~~~~~~~~g~~~~~ 160 (351) T protein:vir:79 81 LFFKANVLASTFRPHRWLSRHAFERWALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFSGFVYVNGWQERHEF 160 (351) T ss_pred hhhhhhHHhhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCCEEEEEEeCCcceeeeecCCeEEEEecCceEEEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 156 APGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRN 235 (344) Q Consensus 156 ~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~ 235 (344) +++||||+|.+++.+++||+||+.++++++.++.++++|+++||+||++|+|||+++++.+++|++++++++|++++|.+ T Consensus 161 ~~~eIihir~~~~~~~~yGl~~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~il~~~~~~ls~e~~~~lk~~~~~~~G~~ 240 (351) T protein:vir:79 161 EPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTDAAQKQDDVDNMRDALKNAKGPG 240 (351) T ss_pred cCccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCcc Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999 Q ss_pred cccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 236 NFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIP 315 (344) Q Consensus 236 n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P 315 (344) |+++++|+.++++++|++|+|++.+++|+||+|+++++++|||++|||||.++|+.++++++++|+|++.+.|+++||+| T Consensus 241 N~~~~~v~~~~g~~~gi~~~pl~~~~~d~ef~e~k~~s~~eI~~a~~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~l~P 320 (351) T protein:vir:79 241 NFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRP 320 (351) T ss_pred ccCceeEecCCCCccceEEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999998888889999999999999999999 Q ss_pred HHHHHHHHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 316 LQDRIREINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 316 ~~~~ieeln~~L~~~~~~f~~y~l~~~~~ 344 (344) ++++||++|++|+.++++|++|+|.-.|. T Consensus 321 l~~~ie~ln~~lg~~~~~F~~~~llr~d~ 349 (351) T protein:vir:79 321 LQARFAELNDWLGDEVVTFDDYEIPPAPV 349 (351) T ss_pred HHHHHHHHHhhcCcceeeeChhhhccccc Confidence 99999999999999999999999887777 No 6 >protein:vir:103971 Length: 376 # NCBI annotation: pbsx family phage portal protein # Family: family:all:196 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293752;genbank:gi:72537722;genbank:GeneID:3608098 Probab=100.00 E-value=8.1e-100 Score=563.82 Aligned_cols=344 Identities=54% Similarity=0.988 Sum_probs=328.8 Q ss_pred CCCCCCCCCCCchhh-----ccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKK-----MTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSP 75 (344) Q Consensus 1 msk~~~~~~~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~ 75 (344) |||||++.++..++. .+.+...+.+|+||+|++||+.+++++|++|+.+|+|++||+++..|+++.+++++|.+| T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fg~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~La~~~~~~~~h~s~ 105 (376) T protein:vir:10 26 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSSA 105 (376) T ss_pred chhccCCCcccchhhhhHhhhccCcceeEEEEcCCceeccCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhHHhhhh Confidence 999999987655442 233445788999999999999999999999999999999999999999999999999999 Q ss_pred hhhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCceEEEEcCCceEEEE Q lcl|Aclame:pro 76 IYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAF 155 (344) Q Consensus 76 i~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~y~~~~~~~~~~~ 155 (344) |..|+|.++.+++||+++|+++|++++.|++++||+|++++||..|+|++|+|+++.+|++..+.+.|+++..+++.+.| T Consensus 106 l~~k~n~l~~~~~Pnp~lT~~~f~~~v~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~d~~~~~~~~~~~~~~~~ 185 (376) T protein:vir:10 106 LFFKANVLASTFRPHRWLSRHAFERWALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFNGFVYVNGWQERHEF 185 (376) T ss_pred HHHHhHHHHhccCCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCCEEEEEEeCCcceEEEeeCCeEEEEEcCCeEEEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 156 APGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRN 235 (344) Q Consensus 156 ~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~ 235 (344) +++||||+|.+++.+++||+||+.++++++.++.++++|+++||+||++|+|||+++|+.+++|++++++++|++++|.+ T Consensus 186 ~~~eViHir~~~~~~~~yGls~~~~a~~si~l~~aa~~f~~~~f~NGa~pggIl~~~d~~l~~e~~~~lr~~~~~~~G~~ 265 (376) T protein:vir:10 186 EPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTDAAQKQDDVDNMRDALKNAKGPG 265 (376) T ss_pred ccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCcc Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999999999 Q ss_pred cccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 236 NFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIP 315 (344) Q Consensus 236 n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P 315 (344) |+++++|+.++++++|++|+|++++++|+||+|+++++++|||++|||||.++|+.++++++++|+|++.+.|+++||.| T Consensus 266 N~~~~~vl~~~g~~~Gi~~~pls~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~sn~eq~~~~f~~~~L~P 345 (376) T protein:vir:10 266 NFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRP 345 (376) T ss_pred ccCceeEecCCCCccceEEEEccCCHHHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999877889999999999999999999 Q ss_pred HHHHHHHHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 316 LQDRIREINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 316 ~~~~ieeln~~L~~~~~~f~~y~l~~~~~ 344 (344) ++++|||+|++|+.++++|+.|+|.-.|- T Consensus 346 l~~~ieeln~~L~~~~~~F~~~~Llr~d~ 374 (376) T protein:vir:10 346 LQARFAELNDWLGEEVVRFDDYEIPPAPV 374 (376) T ss_pred HHHHHHHHHhhccccccccChhHhhcccc Confidence 99999999999999999999999887777 No 7 >protein:vir:1150 Length: 350 # NCBI annotation: predicted capsid packaging protein # Family: family:all:196 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490599;genbank:gi:17313219;genbank:GeneID:927315 Probab=100.00 E-value=2.1e-99 Score=561.61 Aligned_cols=342 Identities=49% Similarity=0.849 Sum_probs=326.5 Q ss_pred CCCCCCCCCCC--------chhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhh Q lcl|Aclame:pro 1 MSKKKGKTLQP--------AAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHH 72 (344) Q Consensus 1 msk~~~~~~~~--------~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~ 72 (344) |||||++..+. ..++.+.+++.+++||||+|++||+++++++|++|+.+|.|++||+++..|+++.|++++| T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~y~~~~~~~~~~~pp~~~~~la~~~~~~~~h 80 (350) T protein:vir:11 1 MSKRRSHRRQQPVTVQSAQEGEFIPRQGGRAEAFTFGDPMPVLDGRGILDYLECWPNGRWYEPPLSMEGLAKSVGSSVYL 80 (350) T ss_pred CCccccCCCcCccccCCcchhhhccccccceEEEEeCCceeecCcchhhHHHHHhhcCccccCCCCHHHHHHHHhhhhhh Confidence 99999876443 2334566678899999999999999999999999999999999999999999999999999 Q ss_pred hhhhhhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCceEEEEcCCceE Q lcl|Aclame:pro 73 SSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEP 152 (344) Q Consensus 73 ~~~i~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~y~~~~~~~~ 152 (344) +++|+.|+|.++.+++||+++|+++|++++.|++++||||++++||..|++++|+|+++.+|++..+++.||++..++.. T Consensus 81 ~~~l~~k~n~l~~~~~Pn~~~t~~~f~~~v~d~ll~Gnay~~~~rn~~G~~~~L~~l~~~~vr~~~~~~~~~~~~~~~~~ 160 (350) T protein:vir:11 81 QSGLKFKRNMLAKTFIPHRLLSRATFEQFSLDWLTFGSAYLEQPRSRLGTRMPLQAPLAKYMRRGTDLETFYQVRSWKDE 160 (350) T ss_pred ccchhhhhhhhhhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEEcCCCCEEEEEEeCCceeEeeecCCeEEEEeeCCeE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhh Q lcl|Aclame:pro 153 TAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSK 232 (344) Q Consensus 153 ~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~ 232 (344) ++|+++||||+|.+++.+++||+||+.++++++.++.++++|+++||+||++|+|||+++++.+++|+++++++.|++++ T Consensus 161 ~~~~~~eVihir~~~~~~~~yGls~~~~a~~si~l~~~a~~~~~~~f~NGa~~~gil~~~~~~ls~e~~~~l~~~~~~~~ 240 (350) T protein:vir:11 161 HEFEKGSVIQLREADINQEIYGVPEWFCALQSALLNESATLFRRKYYNNGSHAGFILYMTDAAQNEEDIDALRTALKTAK 240 (350) T ss_pred EEECcccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhc Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999 Q ss_pred ccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHH Q lcl|Aclame:pro 233 GRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNE 312 (344) Q Consensus 233 g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~ 312 (344) |++|+++++|+.++++++|++++|++++++|+||+|+++++++|||++|||||+++|+.++++++++|+|++.+.|+++| T Consensus 241 G~~N~~~~~v~~~~g~~~g~~~~pl~~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~ 320 (350) T protein:vir:11 241 GPGNFRNLFVYAPNGKKEGIQLIPVSEVAAKDEFGSIKNISRDDQLAGLRVYPQLMGVVPQNAGGFGSISDAAAVWASLE 320 (350) T ss_pred CccccCceeeecCCCCccceEEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcCCHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999998887889999999999999999 Q ss_pred HHHHHHHHHHHHHhhCCcceeccccccCCC Q lcl|Aclame:pro 313 LIPLQDRIREINGWLGQEVIRFKNYSLDTD 342 (344) Q Consensus 313 l~P~~~~ieeln~~L~~~~~~f~~y~l~~~ 342 (344) |.|++++||++|++|+.++++|++|.++-= T Consensus 321 L~P~~~~ie~ln~~l~~~~~~F~~~~~~~l 350 (350) T protein:vir:11 321 LAPMQTRLQQVNEMIGEEVVRFAQFDAPGL 350 (350) T ss_pred HHHHHHHHHHHHhhcCccccccCcccccCC Confidence 999999999999999999999999876544 No 8 >protein:vir:78191 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111155;genbank:gi:134288732;genbank:GeneID:4960651 Probab=100.00 E-value=4.3e-99 Score=559.89 Aligned_cols=344 Identities=54% Similarity=0.988 Sum_probs=328.3 Q ss_pred CCCCCCCCCCCchh-----hccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAK-----KMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSP 75 (344) Q Consensus 1 msk~~~~~~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~ 75 (344) |||||+++....++ ..+.+...+.+|+||||++||+.+++++|++|+.+|.|++||+++..|+++.+++++|+++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~~~~~h~~~ 80 (351) T protein:vir:78 1 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSSA 80 (351) T ss_pred CCCCCCCCCCCCCCCCchhhhhcccceeEEEEcCCceeecCcchhhhhhhhhccCceecCCCCHHHHHHHHhhhHhhhhh Confidence 99999987655433 3344456788999999999999999999999999999999999999999999999999999 Q ss_pred hhhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCceEEEEcCCceEEEE Q lcl|Aclame:pro 76 IYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAF 155 (344) Q Consensus 76 i~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~y~~~~~~~~~~~ 155 (344) |+.|+|.++.+++||+++++++|++++.++|++||+|++++||..|++++|+|+++.+|++..+.+.|+++..+++.+.| T Consensus 81 l~~k~n~l~~~~~Pn~~~t~~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~v~~~~~~~~~~~~~~~~~~~~~ 160 (351) T protein:vir:78 81 LFFKANVLASTFRPHRWLSRHAFERWALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFSGFVYVNGWQERHEF 160 (351) T ss_pred hhhhhhHHhhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCCEEEEEEecCcceEEeeeCCeEEEEecCCeEEEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999 Q ss_pred ecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 156 APGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRN 235 (344) Q Consensus 156 ~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~ 235 (344) +++||||+|.+++.+++||+||+.++++++.++.++++|+++||+||++|+|||+++++.+++|++++++++|++++|.+ T Consensus 161 ~~~eVihir~~~~~~~~yGl~~~~~a~~si~l~~~a~~~~~~~f~NGa~pggIl~~~~~~ls~e~~~~lr~~~~~~~G~~ 240 (351) T protein:vir:78 161 APDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTDAAQKQDDVDNMRDALKNAKGPG 240 (351) T ss_pred ccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCcc Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999999999 Q ss_pred cccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 236 NFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIP 315 (344) Q Consensus 236 n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P 315 (344) |+++++|+.++++++|++++|++.+++|+||+|+++++++|||++|||||.++|+.++++++++|+|++.+.|+++||+| T Consensus 241 N~~~~~v~~~~g~~~g~k~~pls~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~P 320 (351) T protein:vir:78 241 NFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRP 320 (351) T ss_pred cccceeeecCCCCccceeEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999998888888999999999999999999 Q ss_pred HHHHHHHHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 316 LQDRIREINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 316 ~~~~ieeln~~L~~~~~~f~~y~l~~~~~ 344 (344) ++++||++|++|+.++++|+.|+|.-.|- T Consensus 321 ~~~~iee~n~~l~~~~~~F~~~~Llr~d~ 349 (351) T protein:vir:78 321 LQARFAELNDWLGDEVVRFDDYEIPPAPV 349 (351) T ss_pred HHHHHHHHHhhcCccceecChhhhccccc Confidence 99999999999999999999999887777 No 9 >protein:vir:79150 Length: 368 # NCBI annotation: bacteriophage gpQ # Family: family:all:196 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165254;genbank:gi:145708079;genbank:GeneID:5247161 Probab=100.00 E-value=3.2e-98 Score=555.12 Aligned_cols=344 Identities=59% Similarity=1.049 Sum_probs=327.2 Q ss_pred CCCCCCCCCCCchh-------------hccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAK-------------KMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLR 67 (344) Q Consensus 1 msk~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~ 67 (344) |||||++..+...+ ..+..++.+.+|+||+|++|++++++++|++|+.++.|++||+++..|+++.+ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~p~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~la~~~~ 80 (368) T protein:vir:79 1 MSRNKTRRAARAASAHVRTANTDAPTEHHTDRAAQAEVFSFGDPVEVLDRRELLDYVECMRMGQWYEPPMPWDGLARSFR 80 (368) T ss_pred CCccccccchhccCcccccccccCcchhhccccCceEEEEcCCceeecchhhHHHHHHHHhccchhccCcCHHHHHHHHh Confidence 99999888654322 22344567899999999999999999999999999999999999999999999 Q ss_pred cchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCceEEEEc Q lcl|Aclame:pro 68 AAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVP 147 (344) Q Consensus 68 ~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~y~~~ 147 (344) ++++|++++..++|.+.++++||+++++++|++++.+++++||||++++||..|++++|+|+++.+|++..+++.||++. T Consensus 81 ~~~~h~~~~~~~~n~l~l~~~Pn~~~t~~~f~~l~~d~ll~Gnay~~~~r~~~G~~~~L~~l~~~~v~~~~~~~~~~~~~ 160 (368) T protein:vir:79 81 AAAHHSSAVYVKRNILVSTFIPHPLLSRATFERLVLDWQVFGNAYLERRENVLGGTIRLDTPLAKYVRRGLDLNTYFFVQ 160 (368) T ss_pred hccccchhhhhhcchhhhhcCCCcCCCHHHHHHHHHHHhhcCCeEEEEEEcCCCCEEEEEEeCcccceeeccCCEEEEEe Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 148 SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLREN 227 (344) Q Consensus 148 ~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~ 227 (344) .+++.++|+++||||+|.+++.+++||+||+.++++++.++.++++|+++||+||++|+|||+++++.+++|+++++++. T Consensus 161 ~~~~~~~~~~~dIihir~~~~~~~~yGlsp~~~a~~si~l~~aa~~~~~~~~~NGa~~~gil~~~~~~l~~e~~~~lk~~ 240 (368) T protein:vir:79 161 NWQQPYTFAAGSVFHLQEPDINQEVYGLPEYLSALNATWLNESATLFRRRYYKNGSHAGFILYMTDAAQKQEDVDTLREA 240 (368) T ss_pred cCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999 Q ss_pred HHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHH Q lcl|Aclame:pro 228 MVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKV 307 (344) Q Consensus 228 ~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~ 307 (344) |++++|.+|+++++|+.++++++|++|+|++++++|+||+|+++++++|||++|||||.++|+.++++++++|+|++.+. T Consensus 241 ~~~~~G~~N~g~~~vl~~~g~~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~sn~e~~~~~ 320 (368) T protein:vir:79 241 MKSAKGPGNFRNLFMYAPNGKKDGIQLLPVSEVAAKDEFWNIKNVTRDDQLAAHRVPPQLMGIIPNNTGGFGDVEKAAMV 320 (368) T ss_pred HHHhcCCcccCceeEecCCCCccceeEEEcCCCHHHHHHHHHHHHhHHHHHHHhCCCHHHccccCCCCCccccHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999988777889999999999 Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 308 FVRNELIPLQDRIREINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 308 f~~~~l~P~~~~ieeln~~L~~~~~~f~~y~l~~~~~ 344 (344) |+++||+|++++||++|++|+.++++|++|.|.-.|- T Consensus 321 f~~~~l~Pl~~~ie~ln~~l~~e~~rF~~~~l~~~D~ 357 (368) T protein:vir:79 321 FARNEVKPLQDRLLAINDWIGDEVVRFAPYALGGHDQ 357 (368) T ss_pred HHHHHHHHHHHHHHHHHhccCcceeeechhHhhcccc Confidence 9999999999999999999999999999999988776 No 10 >protein:vir:100328 Length: 346 # NCBI annotation: capsid portal protein Q # Family: family:all:196 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655469;genbank:gi:109289937;genbank:GeneID:4157371 Probab=100.00 E-value=5.6e-95 Score=537.29 Aligned_cols=341 Identities=52% Similarity=0.916 Sum_probs=317.2 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhh-cCcceeccccHHHHHHHhhcchhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECIS-NGRWYEPPISFTGLAKSLRAAVHHSSPIYVK 79 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~-~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~ 79 (344) ||||+++..+.. ..+.+++.+++|+||||++||++.++++|+||+. +|.|++||+++..|+++.+++++|++||..| T Consensus 1 m~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~la~l~~~~~~h~~~i~~k 78 (346) T protein:vir:10 1 MKKQLRKNLTQN--DRLQPQAQTEIFSFGDPIPVLDRADILNYLECSAMYEKWYNPPMSFDGLAKSLRSSTHHESAIITK 78 (346) T ss_pred CCcccCCCCCcc--cccccccCeEEEecCCcceecCchhHHHHHHHhhcCCceEecCCCHHHHHHHHHhhhhcchhhhhh Confidence 999988755443 3344557789999999999999999999999985 7889999999999999999999999999999 Q ss_pred hhhHHHhc-ccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCceEE--EEcCCceEEEEe Q lcl|Aclame:pro 80 RNILASTF-IPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYW--WVPSFNEPTAFA 156 (344) Q Consensus 80 ~~~~~~~~-~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~y--~~~~~~~~~~~~ 156 (344) +|.+...+ .||+++++++|++++.|++++||||++++||..|++++|+|+++.+|++..+.+.++ ....+|+.+.|+ T Consensus 79 ~n~l~~l~~~Pn~~~t~~~f~~~~~d~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~~~~~~~~~g~~~~~~ 158 (346) T protein:vir:10 79 ANILLSTCEVDSRYLSRRDLSSFVKDYLVFGNAYFEVVRNRLGQVQRIESPLAKYVRKGLEAGQFYYVPQRFDHQEHEFA 158 (346) T ss_pred hhhHHHHHhCCCCCCCHHHHHHHHHHHHhcCCeEEEEEEcCCCcEEEEEEecCCceEEEEcCCeEEEEEEccCCeEEEEe Confidence 99988776 799999999999999999999999999999999999999999999999987766543 334577889999 Q ss_pred cccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhcccc Q lcl|Aclame:pro 157 PGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNN 236 (344) Q Consensus 157 ~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n 236 (344) ++||||+|.+++.+++||+||+.++++++.++.++++|+++||+||++|+|||+++++.+++|+++++++.|++.+|++| T Consensus 159 ~~dIih~r~~~~~~~~~G~~~~~~a~~si~l~~~a~~~~~~~~~NG~~~~~il~~~d~~l~~e~~~~i~~~~~~~~g~~n 238 (346) T protein:vir:10 159 KGSIYHLLEPDINQDIYGLPQYLSALQSAWLNESATLFRRKYFLNGAHAGFVFYMSDASQKQEDVENIRQQLKQSKGVGN 238 (346) T ss_pred cccEEEecCCCCCCCeeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCHHHHHHHHHHHHHhcCccc Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999 Q ss_pred ccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 237 FKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPL 316 (344) Q Consensus 237 ~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~ 316 (344) +++++|+.++++++|++++|++.+++|+||+|++++++++||++|||||.++|+.++++++++|+|++.+.|+++||+|+ T Consensus 239 ~~~~~vl~~~~~~~gi~~~pis~~~~d~qf~e~k~~~~~~I~~af~VPp~llG~~~~~~~~~s~~e~~~~~f~~~~l~P~ 318 (346) T protein:vir:10 239 FKNLFVHAPNGKKDGIQIIPIADVSAKDEFFNIKNVSRDDVLAAHRVPPQLMGIIPNNTGGFGNVADAAEVFFITEIEPL 318 (346) T ss_pred cCceeEecCCCCccceeEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999998888899999999999999999999 Q ss_pred HHHHHHHHHhhCCcceeccccccC-CCC Q lcl|Aclame:pro 317 QDRIREINGWLGQEVIRFKNYSLD-TDN 343 (344) Q Consensus 317 ~~~ieeln~~L~~~~~~f~~y~l~-~~~ 343 (344) +++||++|++|+.++++|+.|+|. +|| T Consensus 319 ~~~iee~n~~L~~e~i~F~~~~ll~~~~ 346 (346) T protein:vir:10 319 QERLKEFNQWLGQEVIKFKPSKLLQRTQ 346 (346) T ss_pred HHHHHHHHhhcccceeeechhhhcccCC Confidence 999999999999999999999654 555 No 11 >protein:vir:267 Length: 348 # NCBI annotation: putative capsid portal protein # Family: family:all:196 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536647;genbank:gi:17975125;genbank:GeneID:929081 Probab=100.00 E-value=3.6e-93 Score=527.37 Aligned_cols=337 Identities=33% Similarity=0.522 Sum_probs=306.5 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcC-CccccccchhHHHHhhhhhcC--cceeccccHHHHHHHhhcchhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFG-EPVPVLDRRDILDYVECISNG--RWYEPPISFTGLAKSLRAAVHHSSPIY 77 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~v~~~~~~~~~~--~~~~~p~~~~~l~~~~~~~~~~~~~i~ 77 (344) |++...... ++.....+++|||| +|++||+++++++|++|++++ .|++||+++..|+++.+++++|++||+ T Consensus 1 ~~~~~~~~~------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~epp~~~~~La~l~~~n~~h~~~i~ 74 (348) T protein:vir:26 1 MTEQLIHSH------TTDGTESKSVYSFDPNPEPVDTNSWMTRYCELFYNDFDDYWEPPISLKGLAEIANANGYHGSLLK 74 (348) T ss_pred CCccccchh------hccccCCceEEEecCCCeeecCcchHHHHHHHHhcCCCccccCCCCHHHHHHHHhhhhhhhhhHh Confidence 986554322 23344467899999 899999999999999999865 899999999999999999999999999 Q ss_pred hhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCceEEEEcCCceEEEEec Q lcl|Aclame:pro 78 VKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAP 157 (344) Q Consensus 78 ~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~y~~~~~~~~~~~~~ 157 (344) .|+|.++.+++||+++++++|++++.|++++||||++++||..|+|++|+|+++.+|++..+++ ||++..+++.+.|++ T Consensus 75 ~k~N~l~~~~~Pn~~~t~~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~~l~~~~v~~~~d~~-~~~~~~~g~~~~f~~ 153 (348) T protein:vir:26 75 ARANYVAGRFMNGGGLPMYKMNSACWDYFGLGMSAFVKIRSYLKNVIALEPLPMVHMRKRKNGD-FVQLLRNNEQKVFKA 153 (348) T ss_pred hhhhHHhhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEEcCCCcEEEEEEecCceeEeeecCc-EEEEEecCeEEEEcC Confidence 9999999999999999999999999999999999999999999999999999999999987766 555667788889999 Q ss_pred ccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccc Q lcl|Aclame:pro 158 GSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNF 237 (344) Q Consensus 158 ~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~ 237 (344) +||||+|.+++.+++||+||+.++++++.++.++++|+++||+||++|+|||+++++.+++|+++++|+.|++.+|++|+ T Consensus 154 ~dIiHir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~Il~~~~~~ls~e~~~~lk~~~~~~~G~~n~ 233 (348) T protein:vir:26 154 KDVIFIPQYDPQQQIYGLPDYLGSIQSSLLNRDATLFRRRYYLNGAHMGFIFYATDPNLSEADEKALKEKIASSKGIGNF 233 (348) T ss_pred ccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCcccc Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999999 Q ss_pred cccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 238 KNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQ 317 (344) Q Consensus 238 ~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~ 317 (344) ++++|+.++++++|++++|++++++|+||+|++++++++||++|||||+++|+.+.++++++|+|++.+.|+++||.|++ T Consensus 234 ~~~~vl~~~g~~~Gi~~~pis~~~~d~qf~e~k~~t~~dIa~af~VPp~llGi~~~~~~~~sn~e~~~~~f~~~~l~P~~ 313 (348) T protein:vir:26 234 RSMFVNIPNGKEKGIQLIPVGDIATKDEFERIKNITAQDIFVGHRFPAGMGGMLPQQGANVPDPLKVSQVYDFYEVIPVC 313 (348) T ss_pred cceeEEcCCCCccceeEEEccCChhHHHHHHHHHhhHHHHHHHhCCCHHHccccCCCCCccccHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999888888999999999999999999999 Q ss_pred HHHH-HHHHhhCC-cceecc---ccccCCCCC Q lcl|Aclame:pro 318 DRIR-EINGWLGQ-EVIRFK---NYSLDTDNG 344 (344) Q Consensus 318 ~~ie-eln~~L~~-~~~~f~---~y~l~~~~~ 344 (344) ++|| +||++|+. +..+|+ .+..|.+++ T Consensus 314 ~~ie~~ln~~l~~~~~~~~~fdl~~~~e~~~~ 345 (348) T protein:vir:26 314 KRFMDAVNNDPEIPDNLKLKFNLNPGVESANG 345 (348) T ss_pred HHHHHHHhhhhCCCCccEEEEecCcccccchh Confidence 9998 59999864 333332 113333444 No 12 >protein:vir:78749 Length: 337 # NCBI annotation: putative portal protein # Family: family:all:196 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285643;genbank:gi:148727149;genbank:GeneID:5220095 Probab=100.00 E-value=6e-91 Score=515.20 Aligned_cols=333 Identities=35% Similarity=0.598 Sum_probs=303.8 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhc--CcceeccccHHHHHHHhhcchhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISN--GRWYEPPISFTGLAKSLRAAVHHSSPIYV 78 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~--~~~~~~p~~~~~l~~~~~~~~~~~~~i~~ 78 (344) |||||+++.+. .+.+.+++|+|++|++||+++++++|++|+.+ +.|++||+++..|+++.+++++|.++|.. T Consensus 1 m~~~~~~~~~~------~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~La~l~~~~~~h~~~L~~ 74 (337) T protein:vir:78 1 MTKRQQQPAQA------AASSPRPSVVFSMPEAIDPTAWMTDYTGVFYNPYGEYYQPPIDRKGLAKVARANAHHGAILMA 74 (337) T ss_pred CCCcccCcccc------cccCceeEEEecCcccccCcchhHhhhhhhhccCcceecCCCCHHHHHHHhhcchhhhhHHHh Confidence 99999986533 34556889999999999999999999999987 88999999999999999999999999999 Q ss_pred hhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCceEEEEcCCceEEEEecc Q lcl|Aclame:pro 79 KRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPG 158 (344) Q Consensus 79 ~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~y~~~~~~~~~~~~~~ 158 (344) |.|....++.| ++.+|++++.|++++||||++++||+.|+|++|+|+++.+|++..++..+|. ..++..+.|+++ T Consensus 75 k~N~~~~~f~~----~~~~~~~~~~d~ll~GNay~~~~rn~~G~~~~L~pl~~~~v~~~~d~~~~~~-~~~~~~~~~~~~ 149 (337) T protein:vir:78 75 RRNMVAGRFTN----QRATITAFVHNYLQFGDGGLLKLRNSFGQVVGLHPLSSVYLRRREDGCFVYL-QQGKPNLIYRPD 149 (337) T ss_pred hhccccccCcC----cHHHHHHHHHHHHhhCCeEEEEEECCCCcEEEEEEeCCceeEeeeCCeEEEE-EcCCceEEECCc Confidence 88876665544 3578899999999999999999999999999999999999999987776654 456677899999 Q ss_pred cEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhcccccc Q lcl|Aclame:pro 159 SVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFK 238 (344) Q Consensus 159 eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~ 238 (344) ||||+|.+++.+++||+||+.++++++.++.++++|+++||+||++|+|||+++++.+++|+++++++.|++++|++|++ T Consensus 150 eIiHik~~~~~~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~NGa~p~~il~~~~~~l~~e~~~~lk~~~~~~~G~~n~~ 229 (337) T protein:vir:78 150 DVIWLAQYDPEQQVYGMPDYLGGLQSALLNQDATLFRRRYFLNGAHMGFIFYATDPNMDDDTEEEMKEMIANSKGVGNFR 229 (337) T ss_pred cEEEECCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeEEcCCCCCCHHHHHHHHHHHHHhcCccccc Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999 Q ss_pred ccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhcccccc-ccccccHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 239 NLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPEN-VGSLGDIEKVAKVFVRNELIPLQ 317 (344) Q Consensus 239 ~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~-~~~~~n~e~~~~~f~~~~l~P~~ 317 (344) +++|+.++++++|++|+|++++++|+||+|+++++++|||++|||||+++|+.+++ .++++|+|++.+.|+++||.|++ T Consensus 230 ~~~v~~~~g~~~Gi~~~pis~~~~d~qfle~k~~s~~eIa~a~~VPp~llGi~~~~~~~~~~n~e~~~~~f~~~~L~P~~ 309 (337) T protein:vir:78 230 SMFVNIPDGKPDGIKLIPVGDIATKDEFAAIKGITAQDVLTAHRYPPALAGIIPTNGGGGLGDPEKYDATYARNEVLPLC 309 (337) T ss_pred ceEEEcCCCCccceeEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcccccCCCcCccccHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999998664 57889999999999999999999 Q ss_pred HHHHHHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 318 DRIREINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 318 ~~ieeln~~L~~~~~~f~~y~l~~~~~ 344 (344) ++||+.+++++.+..+|..|++..... T Consensus 310 ~~ie~~~n~~ll~~~~~~~f~~~~~~~ 336 (337) T protein:vir:78 310 ELVQDAINSAGLPRALWVTFRETIGAA 336 (337) T ss_pred HHHHHHHhhhcCChhhceecccccccc Confidence 999975555556666777888888888 No 13 >protein:vir:3780 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536820;genbank:gi:17981829;genbank:GeneID:929208 Probab=100.00 E-value=1.2e-89 Score=508.01 Aligned_cols=334 Identities=31% Similarity=0.492 Sum_probs=306.9 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhh--hcCcceeccccHHHHHHHhhcchhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECI--SNGRWYEPPISFTGLAKSLRAAVHHSSPIYV 78 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~--~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~ 78 (344) |.|++++..... .+.+.....+|||++|+++ ++++|.+|+ .++.|++||+++..|+++.|++++|++||.. T Consensus 1 ~~~~~~~~~~~~---~~~~~~~~~~f~~~~~~~~----~~~~y~~~~~~~~~~~~epp~~~~~la~l~~~~~~h~~~i~~ 73 (345) T protein:vir:37 1 MKTNVKTDNKKG---IVIAPINDRTFSLNEISAS----PALDYVGIGFDENYNCYLPPVNRHALAKLPHQNAQHGGILHS 73 (345) T ss_pred CCCCccccchhh---cccCcceeEEeecCCcccc----cchhhhhhhhcCCccccCCCCCHHHHHHHhhcccccccceee Confidence 988887743322 3344456789999999998 578888887 5788999999999999999999999999999 Q ss_pred hhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCceEEEEc-----CCceEE Q lcl|Aclame:pro 79 KRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVP-----SFNEPT 153 (344) Q Consensus 79 ~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~y~~~-----~~~~~~ 153 (344) |+|.++.+++||+++|+++|++++.+++++||+|++++||..|+|++|+|+++.+|++..+++.+|.+. .+++.+ T Consensus 74 k~n~l~~~~~Pn~~lt~~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~d~~~~~~~~~~~~~~~g~~~ 153 (345) T protein:vir:37 74 RANMVSSLYEGGKALSRMDMRALCLNLIQFGDVGLLKVRNGFGQVVRLVPLSSLYLRVRKDGGYSYLMKKSLYDTAQEIY 153 (345) T ss_pred echHHHhhccCCCCCCHHHHHHHHHHHHhcCCeEEEEEEcCCCcEEEEEEEcCceeEEEEeCCeeEEEEEeEecCCceEE Confidence 999999999999999999999999999999999999999999999999999999999999888765543 457888 Q ss_pred EEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhc Q lcl|Aclame:pro 154 AFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKG 233 (344) Q Consensus 154 ~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g 233 (344) +|+++||||+|.+++.+++||+||+.++++++.++.++++|+++||+||++|+|||+++++.+++|++++++++|++++| T Consensus 154 ~~~~~dVihir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NG~~p~~Il~~~d~~l~~e~~~~lk~~~~~~~g 233 (345) T protein:vir:37 154 RYDAKDIIFIKLYDPMQQVYGSPDYVGGIQSALLNSDATVFRRRYFSNGAHMGFILYSTDPDLTEEMEEEIARKISESKG 233 (345) T ss_pred EEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEecCCCCCHHHHHHHHHHHHHhcC Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999 Q ss_pred cccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHH Q lcl|Aclame:pro 234 RNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNEL 313 (344) Q Consensus 234 ~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l 313 (344) .+|+++++|+.++++++|++++|++++++|+||+|++++++++||++|||||+++|+.++++++++|+|++.+.|+++|| T Consensus 234 ~~n~~~~~i~~p~g~~~G~~~~pls~~~~d~qf~e~k~~~~~dIa~a~~VPp~llGi~~~~~~~~~~~e~~~~~f~~~~l 313 (345) T protein:vir:37 234 VGNFRSMFVNIANGHPDGLKVIPIGDTGTKDEFANIKNISAQDVLTAHRFPAGLSGIIPTNTGGLGDPLKYREVYHYDEV 313 (345) T ss_pred cccccceEEEcCCCcccceEEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCccCCCCCCcccHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999988888899999999999999999 Q ss_pred HHHHHHHHH-HHHhh---CCcceeccccccCC Q lcl|Aclame:pro 314 IPLQDRIRE-INGWL---GQEVIRFKNYSLDT 341 (344) Q Consensus 314 ~P~~~~iee-ln~~L---~~~~~~f~~y~l~~ 341 (344) .|++++||+ +|+.+ +.+.++|++|+|.- T Consensus 314 ~P~~~~ie~~ln~~~~~~~~~~i~F~~~~L~~ 345 (345) T protein:vir:37 314 MPLQEIIAETINQDPEIKNLLKIKFREQNFAK 345 (345) T ss_pred HHHHHHHHHHhhhhccCCCcceEEecchhhcC Confidence 999999996 55433 44678999999988 No 14 >protein:vir:3743 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043484;genbank:gi:9628619;genbank:GeneID:1261113 Probab=100.00 E-value=7.5e-89 Score=503.73 Aligned_cols=334 Identities=31% Similarity=0.491 Sum_probs=306.0 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhh--hcCcceeccccHHHHHHHhhcchhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECI--SNGRWYEPPISFTGLAKSLRAAVHHSSPIYV 78 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~--~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~ 78 (344) |+|+++..... ..+.+.....+|+|++|++ +++++|.+|+ .+++|++||+++..|+++.|+++||++||+. T Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~y~~~~~~~~~~~~epp~~~~~la~~~~~~~~h~~~i~~ 73 (345) T protein:vir:37 1 MKTNVKTDNKK---GIVIAPINDRTFSLSEITA----SPALDYVGIGFDENYNCYLPPVNRHALAKLPHQNAQHGGILHS 73 (345) T ss_pred CCccccccchh---hhcCCCceEEEeecCCccc----chhhcccceeeecCCccccCCCCHHHHHHHhhcchhhcchhhh Confidence 99987764332 2233334678899999986 4788899887 4778999999999999999999999999999 Q ss_pred hhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCceEEEEc-----CCceEE Q lcl|Aclame:pro 79 KRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVP-----SFNEPT 153 (344) Q Consensus 79 ~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~y~~~-----~~~~~~ 153 (344) |+|.++.+++||+++|+++|++++.|++++||+|++++||+.|++++|+|+++.+|++..+++.+|++. .+++.+ T Consensus 74 k~n~l~~~~~Pn~~~t~~~f~~~v~d~ll~Gnay~~i~rn~~G~~~~L~pl~~~~vr~~~d~~~~~~~~~~~~~~~g~~~ 153 (345) T protein:vir:37 74 RANMVSATYEGGKALSKMEMRALCLNLIQFGDVGLLKVRNGFGQVVRLVPLSSLYLRVHKDGGYSYLMKKSLYDTAQEIY 153 (345) T ss_pred hhhHHhhccCCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCCEEEEEEecCceeEEeecCCeeEEEeeeeeccCceEE Confidence 999999999999999999999999999999999999999999999999999999999999888766543 357888 Q ss_pred EEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhc Q lcl|Aclame:pro 154 AFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKG 233 (344) Q Consensus 154 ~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g 233 (344) +|+++||||+|.+++.+++||+||+.++++++.++.++++|+++||+||++|+|||+++++.+++|++++++++|++.+| T Consensus 154 ~~~~~eViHir~~~~~~~~~Gl~~~~~a~~si~l~~~a~~~~~~~f~NGa~~~~Il~~t~~~l~~e~~~~lk~~~~~~~g 233 (345) T protein:vir:37 154 RYDAKDIIFIKLYDPMQQVYGSPDYVGGIQSALLNSDATVFRRRYFSNGAHMGFILYSTDPDLTEEMEEEIARKISESKG 233 (345) T ss_pred EEccccEEEEcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHHHHhcC Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999 Q ss_pred cccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHH Q lcl|Aclame:pro 234 RNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNEL 313 (344) Q Consensus 234 ~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l 313 (344) ++|+++++++.++++++|++++|++.+++|+||+|++++++++||++|||||.++|+.++++++++|+|++.+.|+++|| T Consensus 234 ~~n~~~~~i~~~~g~~~G~~~~pl~~~~~d~qf~e~k~~~~~dI~~a~~VPp~liGi~~~~t~~~s~~e~~~~~f~~~~l 313 (345) T protein:vir:37 234 VGNFRSMFVNIAGGHPDGLKVIPIGDTGTKDEFANIKNISAQDVLTAHRFPAGLSGIIPTNTGGLGDPLKYREVYHYDEV 313 (345) T ss_pred ccccCceeEecCCCCccceeEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhccccCCCCCcccHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999988888899999999999999999 Q ss_pred HHHHHHHHH-HHHhh---CCcceeccccccCC Q lcl|Aclame:pro 314 IPLQDRIRE-INGWL---GQEVIRFKNYSLDT 341 (344) Q Consensus 314 ~P~~~~iee-ln~~L---~~~~~~f~~y~l~~ 341 (344) +|++++||+ +|+.+ +...++|++|+|.- T Consensus 314 ~P~~~~ie~~ln~~~e~~~~~~i~F~~~~l~k 345 (345) T protein:vir:37 314 MPLQEIIAETINQDPEIKNLLKIKFREQNFAK 345 (345) T ss_pred HHHHHHHHHHhhhhhccCCcceEEECchhhcC Confidence 999999995 66543 45679999999988 No 15 >protein:vir:1884 Length: 424 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037664;genbank:gi:9634122;genbank:GeneID:1262519 Probab=100.00 E-value=2.2e-71 Score=407.92 Aligned_cols=325 Identities=17% Similarity=0.213 Sum_probs=260.0 Q ss_pred CCCCCCCCCCCchhhccccccceEEEE-----cCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHh---hcchhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFT-----FGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSL---RAAVHH 72 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~-----~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~---~~~~~~ 72 (344) +=+.+++ ..+... +.+. +..... .-+++.+|.+++|++||.+|+.+.+ ++|+.+++..+.. +....| T Consensus 23 ~~~~~~~-~~~~~~--~~~~-~~~~~~~~~~~~v~~~~al~~~~v~~cv~~Ia~~iA-~lp~~~~~~~~~~~~~~~~~~~ 97 (424) T protein:vir:18 23 WFVGGRL-VTPNQG--SQTG-PVSAHGHLGDSSINDERILQISTVWRCVSLISTLTA-CLPLDVFETDQNDNRKKVDLSN 97 (424) T ss_pred hhccccc-cccccc--cccc-ccccccccccccccHHHhhccHHHHHHHHHHHHhhc-cCceEEEEeecCCceeeecccc Confidence 1111111 111111 1111 111111 1256788999999999999987755 8888876533211 111111 Q ss_pred hhhhhhhhhhHHHhcccCCCCCHHHHHHHH-HHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc-eEEEEcCCc Q lcl|Aclame:pro 73 SSPIYVKRNILASTFIPHPWLSQQDFSRFV-LDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED-VYWWVPSFN 150 (344) Q Consensus 73 ~~~i~~~~~~~~~~~~pn~~~~~~~f~~~~-~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~-~~y~~~~~~ 150 (344) + -..++..+||+++++++|++.+ .+++++||+|++|.|+..|++++|+|++|..|++..+++ .+|.+..+| T Consensus 98 --~-----l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~pl~~~~V~v~~~~~~~~y~~~~~g 170 (424) T protein:vir:18 98 --P-----LARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVISLLPLQSANMDVKLVGKKVVYRYQRDS 170 (424) T ss_pred --H-----HHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCcceEEEEcCCeEEEEEEeCC Confidence 1 1245567899999999998754 588999999999999999999999999999999876655 467778888 Q ss_pred eEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 151 EPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVK 230 (344) Q Consensus 151 ~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~ 230 (344) +..+|+++||||+|+++ .++++|+||+..++++++++.++++|..++|+||++|+|||++++..+++++++++++.|++ T Consensus 171 ~~~~~~~~eIih~r~~~-~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~~~~~~~~ 249 (424) T protein:vir:18 171 EYADFSQKEIFHLKGFG-FTGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGEKVLTEQQRSQVEENFKE 249 (424) T ss_pred eEEEeccccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCCcCCCHHHHHHHHHHHHH Confidence 88899999999999886 47899999999999999999999999999999999999999998777999999999999998 Q ss_pred hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHH Q lcl|Aclame:pro 231 SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVR 310 (344) Q Consensus 231 ~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~ 310 (344) ..|+.|+++++||+ .|++|++++++++|+||+|++++++++||++|||||++||+.++++.+++|+|++.+.|++ T Consensus 250 ~~~g~nag~~~vl~-----~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~eq~~~~f~~ 324 (424) T protein:vir:18 250 IAGGPVKKRLWILE-----AGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIEQQNLGFLQ 324 (424) T ss_pred HhCCcccCCceecc-----CCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccccHHHHHHHHHH Confidence 88889999999994 5889999999999999999999999999999999999999988777788999999999999 Q ss_pred HHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 311 NELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 311 ~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) +||.||+++|| +||++|.+...+ ..|.++||-- T Consensus 325 ~tl~P~~~~ie~~l~~~L~~~~~~-~~~~~~fd~~ 358 (424) T protein:vir:18 325 YTLQPYISRWENSIQRWLIPAKDV-GRIHAEHNLD 358 (424) T ss_pred HHHHHHHHHHHHHHHhhcCCcccc-CCeEEEEech Confidence 99999999998 799999775432 2333333322 No 16 >protein:vir:189 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037699;genbank:gi:9634156;genbank:GeneID:1262529 Probab=100.00 E-value=3.5e-71 Score=406.85 Aligned_cols=326 Identities=17% Similarity=0.238 Sum_probs=261.0 Q ss_pred CCC-----CCCCCCCCchhhccccccceEEEEc-----CCccccccchhHHHHhhhhhcCcceeccccHHHHHHHh---h Q lcl|Aclame:pro 1 MSK-----KKGKTLQPAAKKMTASAPKMEAFTF-----GEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSL---R 67 (344) Q Consensus 1 msk-----~~~~~~~~~~~~~~~~~~~~~~~~~-----~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~---~ 67 (344) +++ ++.+...+.... .+. +.....| -+++.+|.+++|++||.+|+.+.+ ++|+.+++..+.. + T Consensus 17 ~~~~~~~f~~~~~~~~~~~~--~~~-~~~~~~~~~~~~v~~~~al~~~~v~~cv~~Ia~~iA-~lp~~vy~~~~~~~~~~ 92 (424) T protein:vir:18 17 WARLKSWFVGGRLVTPNQGS--QTG-PVSAHGYLGDSSINDERILQISTVWRCVSLISTLTA-CLPLDVFETDQNDNRKK 92 (424) T ss_pred HHHHHhhccccccccccchh--hcc-ccccccccccccccHHHhhccHHHHHHHHHHHHhhc-cCceEEEEeccCCceee Confidence 111 111111111111 111 1111111 256788999999999999987755 8888876533211 1 Q ss_pred cchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc-eEEE Q lcl|Aclame:pro 68 AAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED-VYWW 145 (344) Q Consensus 68 ~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~-~~y~ 145 (344) ....| + -..++..+||+++++++|++. +.+++++||+|++|+|+..|++++|+|++|.+|++..+++ .+|. T Consensus 93 ~~~~~--~-----l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~y~ 165 (424) T protein:vir:18 93 VDLSN--P-----LARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVISLLPLQSANMDVKLVGKKVVYR 165 (424) T ss_pred ecccc--H-----HHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCcceEEEEcCCeEEEE Confidence 11111 1 124566789999999999875 5588999999999999999999999999999999877655 4677 Q ss_pred EcCCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHH Q lcl|Aclame:pro 146 VPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLR 225 (344) Q Consensus 146 ~~~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk 225 (344) +..+|...+|+++||||+|+++ .++++|+||+..++++++++.++++|..++|+||++|+|+|++++..++++++++++ T Consensus 166 ~~~~g~~~~~~~~eVihir~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l~~e~~~~~~ 244 (424) T protein:vir:18 166 YQRDSEYADFSQKEIFHLKGFG-FTGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGEKVLTEQQRSQVE 244 (424) T ss_pred EEeCCeEEEeccccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCcCCCHHHHHHHH Confidence 8888888999999999999886 578999999999999999999999999999999999999999987778999999999 Q ss_pred HHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHH Q lcl|Aclame:pro 226 ENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVA 305 (344) Q Consensus 226 ~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~ 305 (344) +.|++..|+.|+++++|| ++|++|++++++++|+||+|++++++++||++|||||++||+.++++.+++|+|++. T Consensus 245 ~~~~~~~~~~nag~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~eq~~ 319 (424) T protein:vir:18 245 ENFKEIAGGPVKKRLWIL-----EAGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIEQQN 319 (424) T ss_pred HHHHHHhCCcccCCceec-----cCCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCCCcccccccHHHHH Confidence 999998888999999999 458899999999999999999999999999999999999999887777889999999 Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 306 KVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 306 ~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) +.|+++||.||+++|| +||++|.++..+ +.|.++||-- T Consensus 320 ~~f~~~tl~P~~~~ie~~ln~~L~~~~~~-~~~~~~fd~~ 358 (424) T protein:vir:18 320 LGFLQYTLQPYISRWENSIQRWLIPSKDV-GRLHAEHNLD 358 (424) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcccc-CCeEEEEech Confidence 9999999999999998 799999766433 2333333311 No 17 >protein:vir:100249 Length: 431 # NCBI annotation: gp78 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355414;genbank:gi:77864704;genbank:GeneID:3725971 Probab=100.00 E-value=1.8e-70 Score=402.96 Aligned_cols=325 Identities=17% Similarity=0.203 Sum_probs=252.7 Q ss_pred CC-----CCCCCC-CCCchhh---cccccc----ceEEEE-c------------------CCccccccchhHHHHhhhhh Q lcl|Aclame:pro 1 MS-----KKKGKT-LQPAAKK---MTASAP----KMEAFT-F------------------GEPVPVLDRRDILDYVECIS 48 (344) Q Consensus 1 ms-----k~~~~~-~~~~~~~---~~~~~~----~~~~~~-~------------------~~p~~~~~~~~v~~~~~~~~ 48 (344) |. +|++.+ .+..+.. ...+++ .+..+. . .+++.+|.+++|++||.+|+ T Consensus 1 Mgl~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~V~~ci~~Ia 80 (431) T protein:vir:10 1 MGLFDFIRREKQPEAQARPHVEPSFQASTPTTSIPGETFEGLDDPRLKEYIRRGELNGGTGRETRALRNMAVLRCVTLIS 80 (431) T ss_pred CcchhhhhcCcccccccccccccccccccccccccccccccccchHHHHhhccCccCcceechhhhhccHHHHHHHHHHH Confidence 54 222211 1111110 000111 111221 1 13567889999999999998 Q ss_pred cCcceeccccHHHHHHHhhcchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEE Q lcl|Aclame:pro 49 NGRWYEPPISFTGLAKSLRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLE 127 (344) Q Consensus 49 ~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~ 127 (344) ++.+ ++|+.+++..+..+....|. -..++..+||+++++++|++. +.+++++||+|++|+|++ |++++|+ T Consensus 81 ~~iA-~lp~~v~~~~~~~~~~~~~~-------~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~-g~~~~L~ 151 (431) T protein:vir:10 81 GTIG-MLPMNLISSDDSKQVLTDDP-------AHRLLKYKPNDWQTPMEFKSLMQLRALLDGESMARIVWSG-NRPIRLI 151 (431) T ss_pred Hhhc-cCceEEEEecCceeeeccch-------HHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcC-CceEEEE Confidence 7654 88988765432222222221 234566789999999999875 568899999999999996 8999999 Q ss_pred EecCcceecccc--CceEEE-EcCCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 128 TSPAKYTRRGVE--EDVYWW-VPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAH 204 (344) Q Consensus 128 pl~~~~v~~~~~--~~~~y~-~~~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~ 204 (344) |+++.+|++..+ +..+|. ...+|..+.|+++||||+|+++ .|+++|+||+..++++++++.++++|..++|+||++ T Consensus 152 pl~~~~v~~~~~~~~~~~y~~~~~~g~~~~~~~~dViHir~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~ 230 (431) T protein:vir:10 152 PMDRGSAKGRLTSTWQIVYDYTTPTGDKIELPAREVFHLRDLS-IDGVSGVSRVKLSGNALELAEQAERAASRTFRTGVM 230 (431) T ss_pred EEcCceeEEEEcCCCeEEEEEEeCCceEEEEchhhEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCC Confidence 999999987543 333444 4457788899999999999886 478999999999999999999999999999999999 Q ss_pred CceEEEeCCCCCCHHHHHHHHHHHHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcC Q lcl|Aclame:pro 205 AGYIMYVTDAVQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRI 283 (344) Q Consensus 205 p~gil~~~~~~l~~e~~~~lk~~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgV 283 (344) |+|||++++ .+++|+.+++++.|++ +.|.+|+|+++|| ++|++|+|++++++|+||+|++++++++||++||| T Consensus 231 p~gil~~~~-~ls~e~~~~~~~~~~~~~~g~~n~g~~~vl-----~~g~~~~~l~~~~~d~q~le~r~~~~~~Ia~~fgV 304 (431) T protein:vir:10 231 AGGAIEVPK-ELSDNAYGRMKASVQENHTGSENAGSWMLL-----EEGATAKQFSNTAASAQQIENRNHQIEEVARMYGV 304 (431) T ss_pred ccEEEecCC-CCCHHHHHHHHHHHHHHhcCccccCCceec-----CCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCC Confidence 999999875 6999999999999965 6778999999999 46889999999999999999999999999999999 Q ss_pred CHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 284 PFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 284 Pp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) ||++||+. +++|++|+|++.+.|+++||.||+++|| +||++|.++..+ ..|.++||-. T Consensus 305 Pp~~lg~~--~~~t~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~~-~~~~~~fd~~ 363 (431) T protein:vir:10 305 PRPLLMMD--DTSWGSGIEQLAIFFIQYGLSHWFVSWEQAAARAFLPEKML-GQRQFKFNEG 363 (431) T ss_pred CHHHhCCC--CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhc-CCceEEEech Confidence 99999985 4578999999999999999999999998 799999765433 2344444322 No 18 >protein:vir:4509 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599035;genbank:gi:19548993;genbank:GeneID:935206 Probab=100.00 E-value=6e-69 Score=394.61 Aligned_cols=326 Identities=14% Similarity=0.182 Sum_probs=252.9 Q ss_pred CC-----CCCCCCCCCchhhccccc-cceEEE---EcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchh Q lcl|Aclame:pro 1 MS-----KKKGKTLQPAAKKMTASA-PKMEAF---TFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVH 71 (344) Q Consensus 1 ms-----k~~~~~~~~~~~~~~~~~-~~~~~~---~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ 71 (344) |- +||.. ..+.. ..+... .....+ ...+++.+|.+++|++||.+|+++.+ ++|+.+++..+..+ T Consensus 17 ~~~~~lf~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~vs~~~al~~~~v~~cv~~Ia~~iA-~lp~~v~~~~~~~~---- 89 (424) T protein:vir:45 17 VLLDALFRSKSL-ENPST-PITGDAVDTDGLFRADVYVSPETAMKLAAVYSCIYVLSSSLA-QMPLHVMRRHKGKV---- 89 (424) T ss_pred HHHHhhccccCC-CCCcc-ccchhhhhhhccccCCceechHHhhccHHHHHHHHHHHHHHh-hCceEEEEecCCce---- Confidence 22 22211 11111 111100 000011 12357789999999999999987755 88888764322111 Q ss_pred hhhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCce-EEEEcCC Q lcl|Aclame:pro 72 HSSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV-YWWVPSF 149 (344) Q Consensus 72 ~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~-~y~~~~~ 149 (344) ..+..+. -..++..+||+++++++|++. +.+++++||+|++|.|+..|++++|+|++|..|++..+++. +|.+... T Consensus 90 -~~~~~~~-l~~lL~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~i~~~~~~~~y~~~~~ 167 (424) T protein:vir:45 90 -EPARDHP-AFYLVHDEPNTWQTSYKWRELKQRHILGWGNGYTWVKRNRRGEVISLDCCMPWETTLMNTGGRYTYGLYNE 167 (424) T ss_pred -eecccch-HHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEecCceEEEEEcCCeEEEEEEec Confidence 1111111 123456689999999999875 56889999999999999999999999999999988776554 5666555 Q ss_pred ceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 150 NEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMV 229 (344) Q Consensus 150 ~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~ 229 (344) +...+|+++||||+|.+++ ++++|+||+..++++|+++.++++|+.++|+||++|+|||++++ .+++|+.+++++.|+ T Consensus 168 ~~~~~~~~~eVih~r~~~~-d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~-~l~~e~~~~~~~~~~ 245 (424) T protein:vir:45 168 YGAFAISPDDMIHIRALGN-NQKMGLSPIMQHAETIGMGMSGQKYTESFFSGNARPAGIVSVKS-GLNKESWGWLKDQWQ 245 (424) T ss_pred CceEEECcccEEEecCcCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCC-CCCHHHHHHHHHHHH Confidence 5567899999999998875 78999999999999999999999999999999999999999875 589999999999997 Q ss_pred Hh-hcc-ccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHH Q lcl|Aclame:pro 230 KS-KGR-NNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKV 307 (344) Q Consensus 230 ~~-~g~-~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~ 307 (344) +. .|. +|+|+++|+ +.|++|++++++++|+||+|++++++++||++|||||++||+.+ .++++|+|++.+. T Consensus 246 ~~~~g~~~n~g~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~--~~t~sn~eq~~~~ 318 (424) T protein:vir:45 246 KASQALRRQENKTMLL-----PADLDYKALTVSPVDAQIIDMMKLNRSMIAGIFNIPAHMINDLE--KATFSNISAQAIQ 318 (424) T ss_pred HHhccccccCCceeEc-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC--CCCcccHHHHHHH Confidence 64 553 689999999 46889999999999999999999999999999999999999863 4789999999999 Q ss_pred HHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 308 FVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 308 f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) |+++||+||++.|| +||++|.++..+-..|.++||-- T Consensus 319 f~~~tL~P~~~~ie~~ln~kLl~~~e~~~g~~i~fd~~ 356 (424) T protein:vir:45 319 FVRYTMMPWVTNWEQELNRRLFTRAELAAGYYVRFNLT 356 (424) T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhcCCcEEEeech Confidence 99999999999998 79999987543323343444322 No 19 >protein:vir:4337 Length: 434 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061500;genbank:gi:9635589;genbank:GeneID:1262858 Probab=100.00 E-value=4.7e-69 Score=395.16 Aligned_cols=327 Identities=15% Similarity=0.134 Sum_probs=262.2 Q ss_pred CCCCCCCCCCCchhhcccc--ccceEEEE-------------------cCCccccccchhHHHHhhhhhcCcceeccccH Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTAS--APKMEAFT-------------------FGEPVPVLDRRDILDYVECISNGRWYEPPISF 59 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~--~~~~~~~~-------------------~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~ 59 (344) ||..-.+..+++.+..... +.....++ ..+++.+|.+++|++||.+|+++.+ ++|+.+ T Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~v~~~~al~~~~V~~~i~~ia~~ia-~lp~~~ 79 (434) T protein:vir:43 1 MSKSLGKVLSSATSAPRSSLFGWGGKTIRLTDGAFWSQFLGRESSSGKKVTVDKAMKLSAVWACVRLISTSVA-GLPLGV 79 (434) T ss_pred CccchhhhhhhcccccchhhhcccccccccCchHHHHHHhcCCccCCceechhhhhccHHHHHHHHHHHHhhh-hCceEE Confidence 9888777666554432221 00011111 1135678999999999999987654 888887 Q ss_pred HHHHHH-hh-cchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHHH-HHHHhcCCeEEEEEECCCCceEEEEEecCcceec Q lcl|Aclame:pro 60 TGLAKS-LR-AAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFV-LDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRR 136 (344) Q Consensus 60 ~~l~~~-~~-~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~~-~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~ 136 (344) ++.... .+ ....|. -..++..+||++++.++|++.+ .+++++||+|++|.|+ .|+|++|+||+|..|++ T Consensus 80 ~~~~~~g~~~~~~~~~-------l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~~~-~G~~~~L~~l~p~~v~~ 151 (434) T protein:vir:43 80 YERKADGSRVDARSFP-------LYDVVHNSPNDDMTAFQFWQAMVASMLLWGNAYAEIRRA-AGRPAALDFLLPSRVDL 151 (434) T ss_pred EEEcCCCccccccccH-------HHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCcceEE Confidence 653211 10 111111 2245667899999999998754 5889999999999888 59999999999999988 Q ss_pred cccCc--e-EEEEcCCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCC Q lcl|Aclame:pro 137 GVEED--V-YWWVPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTD 213 (344) Q Consensus 137 ~~~~~--~-~y~~~~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~ 213 (344) ..+.+ . |+....+|..+.|+++||||+|+++ .++++|+||+..++++++++.++++|..++|+||++|+|+|++++ T Consensus 152 ~~~~~g~~~y~~~~~~g~~~~~~~~eVih~~~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~ 230 (434) T protein:vir:43 152 ECDENGRLKYFYTTKKGARREIERTNMLHIPAFT-LDGRIGLSAIRYGVDVFGSVMSAEDAANGTFKNGLLPTVAFKVDR 230 (434) T ss_pred EEcCCCeEEEEEEecCceEEEEccccEEEecCcC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEecCC Confidence 76544 2 4445567788899999999999885 578999999999999999999999999999999999999999864 Q ss_pred CCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccc Q lcl|Aclame:pro 214 AVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPE 293 (344) Q Consensus 214 ~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~ 293 (344) .+++++.+++++.|+++.|+.|+|+++|| ++|++|+|++++++|+||+|++++++++||++|||||++||+... T Consensus 231 -~l~~e~~~~~r~~~~~~~g~~nag~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~ 304 (434) T protein:vir:43 231 -ILQPAQREEFREYVKSVSGAMNSGRSPVL-----EQGITPETIGINPVDAQLLETREHGVIEICRWFGVPPWMIGQTDK 304 (434) T ss_pred -CCCHHHHHHHHHHHHHhcCccccCCcccc-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcC Confidence 68999999999999999999999999999 458899999999999999999999999999999999999999877 Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 294 NVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 294 ~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) ++.+++|+|++.+.|+++||.||+++|| +||++|.+...+ ..|.++||-. T Consensus 305 ~~~~~s~~e~~~~~f~~~~L~P~~~~ie~~ln~kL~~~~~~-~~~~~~fd~~ 355 (434) T protein:vir:43 305 GSNWGTGLEQQMLAFLTFSISSITNQIQQCVNKRLLTAPER-IRYYAEFSLE 355 (434) T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhh-cCceEEEech Confidence 7778999999999999999999999998 799999765433 2344444422 No 20 >protein:vir:100150 Length: 437 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneID:2744197 Probab=100.00 E-value=6.1e-69 Score=394.55 Aligned_cols=329 Identities=15% Similarity=0.140 Sum_probs=259.7 Q ss_pred CCCCCCCCCCCchhhccc--cccc----e---EEE-----Ec---CCccccccchhHHHHhhhhhcCcceeccccHHHHH Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTA--SAPK----M---EAF-----TF---GEPVPVLDRRDILDYVECISNGRWYEPPISFTGLA 63 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~--~~~~----~---~~~-----~~---~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~ 63 (344) |.|.|++.......+... +.+. . +.+ .. -++.++|.+++|++||.+|+++.+ ++|+.+++.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~ci~~Ia~~ia-~lp~~~~~~~ 79 (437) T protein:vir:10 1 MKQGKQRALGRIKSSFLKWLGVPISLTDGSFWSAWGGMGSSSGETVTADSALQLSAVWSCVRLIAETIA-TLPLNLYQTK 79 (437) T ss_pred CCcchhhhhhhhHHhhhhhcCCcccCCchhHHHhhcccccCCCceechHhhhccHHHHHHHHHHHHHHh-hCceeEEEEc Confidence 998888876665443111 1110 0 001 01 125678999999999999987654 8888875532 Q ss_pred HHhhcchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHHH-HHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc- Q lcl|Aclame:pro 64 KSLRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFV-LDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED- 141 (344) Q Consensus 64 ~~~~~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~~-~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~- 141 (344) .. +.......+ .-..++..+||++++++.|++.+ .+++++||+|++|+|+. |++++|+|++|..|++..+.+ T Consensus 80 ~~----g~~~~~~~~-~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~-g~~~~L~~l~p~~v~i~~~~~g 153 (437) T protein:vir:10 80 PD----GTRVLAKQH-RLYTVIHSQPNAENTAAEFWEVIVASMLLWGNGYARKLRSA-GVLIGLELMLPQRTTVKRLTSG 153 (437) T ss_pred CC----Cceeecccc-HHHHHhhccCCcCCCHHHHHHHHHHHHhhcCCeEEEEEecC-CcEEEEEEEcCcceEEEECCCC Confidence 21 100000011 11245667899999999998755 58899999999999995 999999999999998876433 Q ss_pred -eEEEE-cCCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHH Q lcl|Aclame:pro 142 -VYWWV-PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRN 219 (344) Q Consensus 142 -~~y~~-~~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e 219 (344) .+|.+ ..+|....|+++||||+|.++ .|+++|+||+..++.+++++.++++|..++|+||++|+|||++++ .++++ T Consensus 154 ~~~y~~~~~~g~~~~~~~~dIih~r~~~-~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~-~l~~e 231 (437) T protein:vir:10 154 ALQYTYRNVDGTVSTLAEDDVFHVRGFS-LDGLMGLTPIQYAREVLGNSTAANKTSASVFRNGLRPSGVLSTDQ-ILQKE 231 (437) T ss_pred eEEEEEEecCceEEEEccccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCC-CCCHH Confidence 34444 456778899999999999886 578999999999999999999999999999999999999999864 68999 Q ss_pred HHHHHHHHHHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhcccccccccc Q lcl|Aclame:pro 220 DIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSL 298 (344) Q Consensus 220 ~~~~lk~~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~ 298 (344) +.+++++.|++ +.|..|+|+++|| ++|++|+|++++++|+||+|++++++++||++|||||++||+.++++.++ T Consensus 232 ~~~~~~~~~~~~~~g~~nag~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~ 306 (437) T protein:vir:10 232 KRAEIRTDLAEQFGGAMQAGKTMVL-----EAGMKYQAITMNPGDVQLLETRAFNIEEICRWYRVPPFMVGHSEKSTSWG 306 (437) T ss_pred HHHHHHHHHHHHhcCccccCcceec-----cCCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccccc Confidence 99999999975 6788999999999 46889999999999999999999999999999999999999987777788 Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 299 GDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 299 ~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) +|+|++.+.|+++||+||++.|| +||++|.++..+ ..+.++||-. T Consensus 307 sn~e~~~~~f~~~tl~P~~~~ie~~l~~kll~~~e~-~~~~~~fd~~ 352 (437) T protein:vir:10 307 TGIEQQTLGFLTFTLRPWLTRIEQAARRSLLRPGER-DQFYAEFSVE 352 (437) T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc-CceEEEEech Confidence 99999999999999999999998 799999765433 1222333221 No 21 >protein:vir:93610 Length: 454 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Probab=100.00 E-value=5.8e-68 Score=389.20 Aligned_cols=325 Identities=15% Similarity=0.151 Sum_probs=254.0 Q ss_pred CCCCCCCCCCCchhhccccccceEEE--------------EcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHH- Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAF--------------TFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKS- 65 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~- 65 (344) +.+|.++........ ..++....| ..-+|..+|.+++|++||.+|+...+ ++|+.+++.... T Consensus 4 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~al~~~~V~~~v~~Ia~~iA-~lp~~~~~~~~~g 80 (454) T protein:vir:93 4 LLRRTRKNQKSGRDV--REAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIA-KMRLRLMQTDAQG 80 (454) T ss_pred ccccCcccccccccc--cchhhhhhhhhhhhhhcchhhcCcccChHHhhccHHHHHHHHHHHHhhc-cCceEEEEeccCC Confidence 555543322222111 111111111 11246789999999999999987655 889887653211 Q ss_pred -hhcchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHHH-HHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccC--c Q lcl|Aclame:pro 66 -LRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFV-LDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEE--D 141 (344) Q Consensus 66 -~~~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~~-~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~--~ 141 (344) .....+ +...++..+||++++++.|++.+ .+++++||+|++++|+..|++++|+|++|.+|++..+. . T Consensus 81 ~~~~~~~--------~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~ 152 (454) T protein:vir:93 81 IRRETRR--------GDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGE 152 (454) T ss_pred ccchhhh--------HHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCcceEEEEcCCCc Confidence 111111 12234557999999999998765 58899999999999999999999999999999876543 4 Q ss_pred eEEEEcCC-----ceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCC Q lcl|Aclame:pro 142 VYWWVPSF-----NEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQ 216 (344) Q Consensus 142 ~~y~~~~~-----~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l 216 (344) .+|.+... +...+|+++||||+|...+.++++|+||+..+..++.++.++++|..++|+||++|+|||++++ .+ T Consensus 153 ~~y~~~~~~~~~~~~~~~~~~~eViH~k~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~-~l 231 (454) T protein:vir:93 153 VFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPG-SI 231 (454) T ss_pred EEEEEEeccccccceeEEecCcceEEeccCCCCCCceeccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEecCC-CC Confidence 45655432 3467899999999997666789999999999999999999999999999999999999999875 68 Q ss_pred CHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhcccccccc Q lcl|Aclame:pro 217 DRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVG 296 (344) Q Consensus 217 ~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~ 296 (344) ++|+.+++++.|++..++.|+|+++||+ .|++|+|++++++|+||+|++++++++||++|||||++||+.. .+ T Consensus 232 ~~e~~~~~~~~~~~~~~g~n~g~~~vl~-----~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~--~~ 304 (454) T protein:vir:93 232 TEENAKKLKSNWDSGYTGENAGKTAILS-----NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQ--PP 304 (454) T ss_pred CHHHHHHHHHHHHHHhcccccCCceecc-----CCceEEEcccChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCC--CC Confidence 9999999999998877779999999994 5889999999999999999999999999999999999999853 46 Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcc---eeccccccCCCCC Q lcl|Aclame:pro 297 SLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEV---IRFKNYSLDTDNG 344 (344) Q Consensus 297 ~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~---~~f~~y~l~~~~~ 344 (344) +++|+|++.+.|+++||.|+++.|| ++|++|.+.. ++|+.-+|...|- T Consensus 305 t~sn~e~~~~~f~~~~l~P~~~~ie~~ln~~L~~~~~~~~~f~~~~ll~~D~ 356 (454) T protein:vir:93 305 SSDNVEALEQQYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDS 356 (454) T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEeechhhhccCH Confidence 8999999999999999999999998 7999996542 3333322222221 No 22 >protein:vir:101648 Length: 518 # NCBI annotation: gp11 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654766;genbank:gi:109302764;genbank:GeneID:4156082 Probab=100.00 E-value=8e-68 Score=388.44 Aligned_cols=327 Identities=13% Similarity=0.162 Sum_probs=247.7 Q ss_pred CCCCCCCCCCCch-hhccccc---------cceE---EEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAA-KKMTASA---------PKME---AFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLR 67 (344) Q Consensus 1 msk~~~~~~~~~~-~~~~~~~---------~~~~---~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~ 67 (344) |---..+..+.++ +...+.- ..+. .+++ ....++.+++|++||.+|+.+.+ ++|+.+++...... T Consensus 1 ~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~V~acV~~IA~~iA-~lpl~l~~~~~~~~ 78 (518) T protein:vir:10 1 MLLANGQTLSAPAMAELSPQMQDSYYYAPAVGMQLERQFSL-YGGIYKNQPWVRTVIAKRAQALA-RLPVKCMFTSGDTE 78 (518) T ss_pred CcccCceeecCchhhhhhhhhhcccccccccceecccccch-hhHHHhhhHHHHHHHHHHHHhhc-cCceEEEEEcCCCc Confidence 4433332222221 1111000 0000 0111 11345678899999999987755 78887654322111 Q ss_pred cchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---eE Q lcl|Aclame:pro 68 AAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---VY 143 (344) Q Consensus 68 ~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---~~ 143 (344) .. . ..+....+..+||+++++++|++. +.+++++||+|++++|+..|+|++|+|++|..|++..+.+ .+ T Consensus 79 ~~------~-~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~v~v~~~~~~~~~~ 151 (518) T protein:vir:10 79 TE------E-SDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKRNSRTGRYE 151 (518) T ss_pred ee------c-cchHHHHHHcCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCCceEEEEcCCCCEEE Confidence 11 1 111233455689999999999875 5588899999999999999999999999999998865432 34 Q ss_pred EEEcC----CceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHH Q lcl|Aclame:pro 144 WWVPS----FNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRN 219 (344) Q Consensus 144 y~~~~----~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e 219 (344) |.+.. ++..++|+++||||+|.++++..++|+||+..++++|.++.++++|+.++|+||++|+|||++++ .++++ T Consensus 152 y~~~~~~~~~~~~~~~~~~eViHir~~s~dg~~~G~spi~~a~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~-~ls~e 230 (518) T protein:vir:10 152 YYFQAGAGVGTQLVSFADDEVVPIRFFNPDGLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEK-RLSEA 230 (518) T ss_pred EEEEecCCccceEEEecCCcEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCC-CCCHH Confidence 44432 34567899999999999987655689999999999999999999999999999999999999874 68999 Q ss_pred HHHHHHHHHHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhcccccccccc Q lcl|Aclame:pro 220 DIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSL 298 (344) Q Consensus 220 ~~~~lk~~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~ 298 (344) +++++++.|++ ++|.+|+|+++|| ++|++|+|++++++|+||+|++++++++||++|||||++||+.+ .+++ T Consensus 231 ~~~~~k~~~~~~~~G~~nag~v~vL-----~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~lg~~~--~~t~ 303 (518) T protein:vir:10 231 AQQRLREQFDRAHSGSSNTGKTMVV-----EEGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILD--RATF 303 (518) T ss_pred HHHHHHHHHHHHhcCccccCcceEc-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCC--CCCc Confidence 99999999976 5677999999999 46899999999999999999999999999999999999999864 4789 Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCccee-----ccccccCCCCC Q lcl|Aclame:pro 299 GDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIR-----FKNYSLDTDNG 344 (344) Q Consensus 299 ~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~-----f~~y~l~~~~~ 344 (344) +|+|++.+.|+++||+||+++|| +||++|.++..+ |+.-.|...|- T Consensus 304 sn~eq~~~~f~~~tL~P~l~~ie~~ln~~L~~~~~~~~~~~fd~~~llr~D~ 355 (518) T protein:vir:10 304 SNISAQMRAFYRDTMAIPIARIQSAMDKYVGQYWVRKNRMKFDIDDVIQPDW 355 (518) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCceEEEechhhhccCH Confidence 99999999999999999999998 799999875432 22222211111 No 23 >protein:vir:7853 Length: 518 # NCBI annotation: gp10 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817460;genbank:gi:29565889;genbank:GeneID:1259085 Probab=100.00 E-value=9.6e-68 Score=388.00 Aligned_cols=327 Identities=14% Similarity=0.169 Sum_probs=247.4 Q ss_pred CCCCCCCCCCCch-hhcccc--c-----c--c---eEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAA-KKMTAS--A-----P--K---MEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLR 67 (344) Q Consensus 1 msk~~~~~~~~~~-~~~~~~--~-----~--~---~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~ 67 (344) |----....+.++ +..... . + . ...+++. ...++.+++|++||.+|+.+.+ ++|+.+++.....+ T Consensus 1 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~V~acV~~IA~~iA-~lp~~l~~~~~~~~ 78 (518) T protein:vir:78 1 MLLANGQTLSAPAMAELSPQMQDSYYYAPAVGMQLERQFSLY-GGIYKNQPWVRTVIAKRAQALA-RLPVKCMFTSGDTE 78 (518) T ss_pred CcccCceeeccchhhhhhhhhhhcccccceeceecccccchh-hHHhhhhHHHHHHHHHHHHhhc-cCceEEEEEcCCcc Confidence 4333332222222 111000 0 0 0 0001111 1345678899999999987755 78888765332111 Q ss_pred cchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---eE Q lcl|Aclame:pro 68 AAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---VY 143 (344) Q Consensus 68 ~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---~~ 143 (344) ....+ .....+..+||++++++.|++. +.+++++||+|++|+|+..|++++|+|++|.+|++..+.+ .+ T Consensus 79 ~~~~~-------~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~Vtv~~~~~~~~~~ 151 (518) T protein:vir:78 79 TEEHD-------TGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKRNSRTGRYE 151 (518) T ss_pred ccccc-------hHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEECCCceEEEEcCCCCEEE Confidence 11111 1223455689999999999875 5688899999999999999999999999999998865532 34 Q ss_pred EEEcC----CceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHH Q lcl|Aclame:pro 144 WWVPS----FNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRN 219 (344) Q Consensus 144 y~~~~----~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e 219 (344) |.+.. ++..+.|+++||||+|.++++..++|+||+..++.+|.++.++++|+.++|+||++|+|||+++ +.++++ T Consensus 152 y~~~~~~~~~~~~~~~~~~eIiHir~~~~dg~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~Ng~~p~gvl~~~-~~ls~e 230 (518) T protein:vir:78 152 YYFQAGAGVGTQLVSFADDEVVPIRFFNPDGLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHE-KRLSPE 230 (518) T ss_pred EEEEecCCccceeEEecCCcEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecC-CCCCHH Confidence 44432 3456789999999999988755568999999999999999999999999999999999999986 468999 Q ss_pred HHHHHHHHHHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhcccccccccc Q lcl|Aclame:pro 220 DIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSL 298 (344) Q Consensus 220 ~~~~lk~~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~ 298 (344) +.+++++.|++ ++|..|+|+++|| +.|++|+|++++++|+||+|++++++++||++|||||++||+.+ .+++ T Consensus 231 ~~~~~k~~~~~~~~G~~nag~~~vL-----~~G~~~~~l~~~~~d~q~le~r~~~~~eIa~afgVPp~~lg~~~--~st~ 303 (518) T protein:vir:78 231 AQQRLREQFDRAHAGSSNTGKTMVV-----EEGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILD--RATF 303 (518) T ss_pred HHHHHHHHHHHHhcCcccCCceeEc-----CCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCC--CCCc Confidence 99999999975 6677899999999 46889999999999999999999999999999999999999864 4789 Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCccee-----ccccccCCCCC Q lcl|Aclame:pro 299 GDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIR-----FKNYSLDTDNG 344 (344) Q Consensus 299 ~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~-----f~~y~l~~~~~ 344 (344) +|+|++.+.|+++||+||+++|| +||++|.+...+ |+.-.|...|- T Consensus 304 sn~e~~~~~f~~~tL~P~~~~ie~eln~~L~~~~~~~~~~~fd~~~Llr~D~ 355 (518) T protein:vir:78 304 SNISAQMRAFYRDTMAIPIARIQSAMDKYVGQYWVRKNRMKFDIDDVIQPDW 355 (518) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcceEEeechhhhccCH Confidence 99999999999999999999998 699999765332 22212211111 No 24 >protein:vir:8100 Length: 466 # NCBI annotation: gp4 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817681;genbank:gi:29566112;genbank:GeneID:1259306 Probab=100.00 E-value=1.5e-67 Score=386.98 Aligned_cols=329 Identities=12% Similarity=0.073 Sum_probs=248.2 Q ss_pred CC------CCCC-CCCCCch-h----hccccccceEEEEc-----------------------CCccccccchhHHHHhh Q lcl|Aclame:pro 1 MS------KKKG-KTLQPAA-K----KMTASAPKMEAFTF-----------------------GEPVPVLDRRDILDYVE 45 (344) Q Consensus 1 ms------k~~~-~~~~~~~-~----~~~~~~~~~~~~~~-----------------------~~p~~~~~~~~v~~~~~ 45 (344) |+ .+.+ ....... . ......+....+.| -+++.++.+++|++||. T Consensus 1 M~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~a~~~~~v~~~i~ 80 (466) T protein:vir:81 1 MRLIDRLLSTRGAAPRMSIDDYAQMLNEFAFNGIGYGFGGGVPRIQQTLAGPSTELAPDTFVGLATQAYQANGPVFACML 80 (466) T ss_pred CchhHHHhhccCcccccchhhhhhhhhhhhccccccccccccHHHHHhhccccccccCccccccchhhhhccHHHHHHHH Confidence 32 1111 1000000 0 00000001111111 13456788999999999 Q ss_pred hhhcCcceeccccHHHHHHHhhcchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCC---- Q lcl|Aclame:pro 46 CISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTT---- 120 (344) Q Consensus 46 ~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~---- 120 (344) +|++.. .++|+.+++..+..+....+ +....+..+||+++++++|++. +.+++++||||++|+|+.. T Consensus 81 ~Ia~~i-a~lp~~~~~~~~~~~~~~~~-------~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~g~l~ 152 (466) T protein:vir:81 81 VRQLVF-SSVRFRWQRLRDGKPSDTFG-------SRDLQILETPWKGGTTQDMLSRMIQDADLAGNSYWTIVDGEFVRMR 152 (466) T ss_pred HHHHhh-ccCceEEEEecCCceeeccc-------cHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEecCccccc Confidence 998775 47898887543322211111 1123344589999999999875 5589999999999999765 Q ss_pred ----CceEEEEEecCcceeccccCce----EEEEcC-----CceEEEEecccEEEecCC-CCCCCccccccchhhHHHHH Q lcl|Aclame:pro 121 ----GKVIRLETSPAKYTRRGVEEDV----YWWVPS-----FNEPTAFAPGSVFHLLEP-DINQELYGLPEYLSALNSAW 186 (344) Q Consensus 121 ----G~~~~L~pl~~~~v~~~~~~~~----~y~~~~-----~~~~~~~~~~eViH~r~~-~~~~~~~G~sp~~~~~~~i~ 186 (344) |.+++|+|++|..|++..+.+. +|.+.. +++..+|+++||||||.+ ++.++++|+||+..++++|+ T Consensus 153 ~~~~g~~~~l~~l~~~~v~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~dviHir~~~~~~d~~~G~s~i~~~~~~i~ 232 (466) T protein:vir:81 153 PDWVDVVVEERMVRGGRGELGGGQLGWRKVGYLYTEGGRQSGNESVGFLAEDVVHFAPIPDPLASYRGMSWLTPILREIR 232 (466) T ss_pred cccCcceeEEEEecCcceEEEEcCCCceEEEEEEEecCcccccceeeeccccEEEEcCCCCcccccccccHHHHHHHHHH Confidence 5589999999999988765442 233332 235678999999999975 56789999999999999999 Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHH-hhccccccccccccCCCccccceeeecccchhHHH Q lcl|Aclame:pro 187 LNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDD 265 (344) Q Consensus 187 ~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q 265 (344) ++.++++|..++|+||++|+|||+++ +.+++|+++++++.|++ +.|.+|+|+++|| +.|++|+|++++++|+| T Consensus 233 ~~~a~~~~~~~~f~ng~~p~gil~~~-~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl-----~~g~~~~~l~~~~~d~q 306 (466) T protein:vir:81 233 ADQAMSKHQAKFFDNGATVNLVIKHN-PMADPAAVKKWADEVNSKHAGVDNAWKNLNL-----YPGADADVVGSNLQEID 306 (466) T ss_pred HHHHHHHHHHHHHhcCCCcceEEecC-CCCCHHHHHHHHHHHHHHhcCccccccceEc-----CCCceEEEccCChhHHH Confidence 99999999999999999999999976 56899999999999975 6788999999999 46889999999999999 Q ss_pred HHHHHhhhHHHHHHHhcCCHHHhccccc-cccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCC Q lcl|Aclame:pro 266 FFNIKKASAADLLDAHRIPFQLMGGKPE-NVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDN 343 (344) Q Consensus 266 ~~e~~~~~~~~Ia~~fgVPp~~lg~~~~-~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~ 343 (344) |+|++++++++||++|||||++||+.++ +.+||+|+|++.+.|+++||.|++++|| +||++|.....+. .+.++|+. T Consensus 307 ~le~~~~~~~~Ia~~fgVPp~~lG~~~~~~~st~sn~eq~~~~f~~~tl~P~~~~ie~~l~~~L~~~~~~~-~~~~~f~~ 385 (466) T protein:vir:81 307 FKNVRGGGETRIAAAAGVPPVIVGLSEGLAAATYSNYGQARRRLADGTAHPLWQNLSGCIGHVMPDMGPDV-RLWYDADD 385 (466) T ss_pred HHHHHHHHHHHHHHHhCCCHHHcccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCc-ceEEEecc Confidence 9999999999999999999999998754 5689999999999999999999999999 6999997644332 12334433 Q ss_pred C Q lcl|Aclame:pro 344 G 344 (344) Q Consensus 344 ~ 344 (344) - T Consensus 386 ~ 386 (466) T protein:vir:81 386 V 386 (466) T ss_pred h Confidence 2 No 25 >protein:vir:3868 Length: 417 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680485;swissprot:trembl:q8ltc2;genbank:gi:22296525;interpro:IPR006427;interpro:IPR006944;uniprot:Q8LTC2;genbank:GeneID:951699 Probab=100.00 E-value=3.4e-67 Score=385.00 Aligned_cols=323 Identities=15% Similarity=0.141 Sum_probs=252.8 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCC---ccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGE---PVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIY 77 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~ 77 (344) |+--|++.....+.-..+-.......++.+ ...+|.+++||+||.+|+++.+ ++|+.+++......... | T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Al~~~~V~~cv~~ia~~iA-~lp~~~~~~~~~~~~~~-~----- 73 (417) T protein:vir:38 1 MKLFRGLATEVDPHWADHLLDSGVIPSFRGGYLGISALRNSDVLTAVSIVSGDVS-RFPLVITDSSTDEVIDL-A----- 73 (417) T ss_pred CccccccccCCCccchhhhcccccccccCCceechhhcccHHHHHHHHHHHHhhc-cCeeEEEEcCCcceecc-c----- Confidence 888766544433221111001111112222 2468999999999999987755 78887754322111111 1 Q ss_pred hhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCC-CceEEEEEecCcceecccc--CceEEEEc--CCce Q lcl|Aclame:pro 78 VKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTT-GKVIRLETSPAKYTRRGVE--EDVYWWVP--SFNE 151 (344) Q Consensus 78 ~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~-G~~~~L~pl~~~~v~~~~~--~~~~y~~~--~~~~ 151 (344) .-..++..+||+++++++|++. +.+++++||+|++|+|+.. |.|.+|+|++|..|++... +..+|.+. .++. T Consensus 74 --~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~y~~i~r~~~g~~~~~l~~l~p~~v~v~~~~~~~~~y~~~~~~~~~ 151 (417) T protein:vir:38 74 --NIEYLMNTKVNKRLSAYQWKFPMMVNAILTGNAYSRIVRDPITNEPAMFEFYAPSQTQVDTSDPDNIIYRFTPYNSSM 151 (417) T ss_pred --hHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCEEEEEEEeCCceEEEEEcCCCeEEEEEEEcCCcE Confidence 1224566789999999999875 5688999999999999864 6799999999999987543 33455443 4555 Q ss_pred EEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHh Q lcl|Aclame:pro 152 PTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKS 231 (344) Q Consensus 152 ~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~ 231 (344) ...++++||||||.++ .++++|+||+.+++++|.++.++++|+.++|+||++|+|||+.+ +.+++++.+++++.|++. T Consensus 152 ~~~~~~~dviH~r~~~-~d~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~-~~l~~e~~~~~~~~~~~~ 229 (417) T protein:vir:38 152 QKVCGFEDVIHWKFFS-YDTIMGRSPLLSLGDEIGLQESGVSTLQKFFKSGLKGSIIKAKE-SRLSAEARQKIREDFERA 229 (417) T ss_pred EEEecCcceEEecCCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeC-CCCCHHHHHHHHHHHHHH Confidence 6789999999999875 57899999999999999999999999999999999999999876 568999999999999887 Q ss_pred hccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHH Q lcl|Aclame:pro 232 KGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRN 311 (344) Q Consensus 232 ~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~ 311 (344) .++.|+|+++|| +.|++|+|++++++|+||+|++++++++||++|||||++||. .++++|+|++.+.|+++ T Consensus 230 ~~g~n~g~~~vl-----~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~----~~~~s~~e~~~~~~~~~ 300 (417) T protein:vir:38 230 QAGADAGSPIIV-----DATMDYQPLEVDTNVLNLINSNNYSTAQIAKALRVPAYRLAQ----NSPNQSVKQLADDYIRN 300 (417) T ss_pred hcccccCCceec-----cCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHhCC----CCcchhHHHHHHHHHHH Confidence 777899999999 458899999999999999999999999999999999999984 35789999999999999 Q ss_pred HHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 312 ELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 312 ~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) ||.|+++.|| +||++|.+...+. .|.++||-- T Consensus 301 tl~P~~~~ie~~l~~~Ll~~~~~~-~~~~~fd~~ 333 (417) T protein:vir:38 301 DLPFYFEPITSEFELKLLDDAQRH-QYCIGFDTK 333 (417) T ss_pred HHHHHHHHHHHHHHhhhcChhhcc-cceEEechh Confidence 9999999998 7999998765442 344555432 No 26 >protein:vir:105064 Length: 421 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006584;genbank:gi:46402090;genbank:GeneID:2777930 Probab=100.00 E-value=2.5e-67 Score=385.75 Aligned_cols=324 Identities=14% Similarity=0.109 Sum_probs=252.4 Q ss_pred CCCCCCCCCCCchh-hccccccceEEEE----cCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHh--hcchhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAK-KMTASAPKMEAFT----FGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSL--RAAVHHS 73 (344) Q Consensus 1 msk~~~~~~~~~~~-~~~~~~~~~~~~~----~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~--~~~~~~~ 73 (344) +.|++++......- ....++..+ ..+ --+++.+|.+++|++||.+|+++.+ ++|+.+++..+.. .....| T Consensus 6 ~~~~~~~~~s~~~~w~~~~~~~~~-~~~~~g~~vt~~~al~~~~v~~~i~~Ia~~iA-~lp~~~~~~~~~g~~~~~~~~- 82 (421) T protein:vir:10 6 MFEGKKRSVSGGGFWEAMLGGVRS-SHSKAGVMITPETALALSAVRACVTLLAESVA-QLPVELYRRDKNGGRQRATDH- 82 (421) T ss_pred hhcccccccCcchhhHHHhhhhcc-CcccCCceechHHhhccHHHHHHHHHHHHhhc-cCceEEEEEcCCCceeecccc- Confidence 45555443321110 000000000 011 1146778999999999999987755 7888875432211 011111 Q ss_pred hhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccC--ceEEEEcCCc Q lcl|Aclame:pro 74 SPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEE--DVYWWVPSFN 150 (344) Q Consensus 74 ~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~--~~~y~~~~~~ 150 (344) .-..++..+||++++++.|++. +.+++++||||++|+|+..|+|++|+|++|..|++..+. ..||++...| T Consensus 83 ------~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~v~~~~~g~~~y~~~~~g 156 (421) T protein:vir:10 83 ------PIYDLIHSQPNKKDTSFEYFEQQQGLLGLEGNCYSIIDRDGKGYPKELIPINPKKVIVLKGPDGMPYYEIPEIG 156 (421) T ss_pred ------hHHHHHhhcccCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEecCceEEEEECCCceEEEEEcCCC Confidence 1234566789999999999875 568899999999999999999999999999999886654 3566666666 Q ss_pred eEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCC---CCCCHHHHHHHHHH Q lcl|Aclame:pro 151 EPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTD---AVQDRNDIEMLREN 227 (344) Q Consensus 151 ~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~---~~l~~e~~~~lk~~ 227 (344) . +++++||||+|.++ .++++|+||+..++.+++++.++++|+.++|+||++|+|||+++. +.+++|+.+++++. T Consensus 157 ~--~~~~~eiih~~~~~-~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~e~~~~~~~~ 233 (421) T protein:vir:10 157 E--TLPMRMMHHVKVFS-LDGYIGSSPIQTNADVLGLNLAVEEHASAVFRRGATMSGVIERPKEAPAIKSQEKIDQLLAK 233 (421) T ss_pred c--EEchhhEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCccCccCCHHHHHHHHHH Confidence 4 58899999999876 579999999999999999999999999999999999999999864 24589999999999 Q ss_pred HHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHH Q lcl|Aclame:pro 228 MVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAK 306 (344) Q Consensus 228 ~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~ 306 (344) |++ +.|.+|++++++| +.|++|++++++++|+||+|++++++++||++|||||++||+. +.++++|+|++.+ T Consensus 234 ~~~~~~g~~n~~~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~--~~~t~sn~e~~~~ 306 (421) T protein:vir:10 234 WTDRYSGINNMFSVALL-----QEGMSYKQMSQDNEKAQLLQSRQWGVEEVCRLYKIPPHMVQML--AKATNNNIEHQGL 306 (421) T ss_pred HHHHhcCccccCcceec-----CCCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCC--cCCccccHHHHHH Confidence 976 5677899999999 4688999999999999999999999999999999999999986 4468999999999 Q ss_pred HHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 307 VFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 307 ~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) .|+++||.|+++.|| +||++|.++..+ ..+.++||-- T Consensus 307 ~f~~~tl~P~~~~ie~~ln~kL~~~~~~-~~~~v~fd~~ 344 (421) T protein:vir:10 307 QFVMYTLLAWLKRHEGALQRDLLLPSER-RDLYIEFNVS 344 (421) T ss_pred HHHHHHHHHHHHHHHHHHhhhccCcccc-CCeEEEEech Confidence 999999999999998 799999876544 2333333322 No 27 >protein:vir:1380 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612832;genbank:gi:20065966;genbank:GeneID:935782 Probab=100.00 E-value=2.9e-67 Score=385.36 Aligned_cols=325 Identities=14% Similarity=0.170 Sum_probs=255.5 Q ss_pred CCCCCCCCCCCchh-hcccc--ccceEEEE-c-------CCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcc Q lcl|Aclame:pro 1 MSKKKGKTLQPAAK-KMTAS--APKMEAFT-F-------GEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAA 69 (344) Q Consensus 1 msk~~~~~~~~~~~-~~~~~--~~~~~~~~-~-------~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~ 69 (344) +-+|++........ ....+ .+....+. | ..+..+|.+++|++||.+|++..+ ++|+.+++-.+.. T Consensus 7 lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~al~~~~v~~ci~~ia~~iA-~lp~~~~~~~~~~--- 82 (422) T protein:vir:13 7 LFNKKNNNDEKRSNYDEDIGIDISDSNFWEKFGIKLNFSVRGKRALKENTVYVCTKIRAESIG-KLSLKIYKDKEEY--- 82 (422) T ss_pred hhhccCCccchhhhhhhccccccCcchhhhhccccCCcccchhhhhccHHHHHHHHHHHHhhh-hCceEEEecCccc--- Confidence 33343333222111 11000 00000010 1 245677999999999999987655 7888875422111 Q ss_pred hhhhhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc------- Q lcl|Aclame:pro 70 VHHSSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED------- 141 (344) Q Consensus 70 ~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~------- 141 (344) ..| . -..++..+||+++++++|++. +.+++++||||++|.|+..|+|++|+|++|..|++..+.+ T Consensus 83 ~~~------~-~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~~~~~~~~~~~~~~ 155 (422) T protein:vir:13 83 KEH------E-LYYLLRYKPNPLMSSINFWKCLETQRTLKGNAYAYIERDRKGKIIGLYPINSDNVTKIIDDDNFLSSLS 155 (422) T ss_pred ccc------h-HHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEcCCcceeccc Confidence 111 1 124556789999999999865 5688999999999999999999999999999998876543 Q ss_pred -eEEEE-cCCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHH Q lcl|Aclame:pro 142 -VYWWV-PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRN 219 (344) Q Consensus 142 -~~y~~-~~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e 219 (344) .+|.+ ..+|...++.++||||++.+.+.++++|+||+..+.++++++.+++++..++|+||++|+|||++++ .++++ T Consensus 156 ~~~y~~~~~~g~~~~~~~~eiih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~-~l~~e 234 (422) T protein:vir:13 156 KVWYVVTDKNGKEHKLLPDEMLHFIGDITLDGLIGIKPLDYLRCTIENGRATQEFINKFFKNGLSIKGIVQYVG-DLDEK 234 (422) T ss_pred eEEEEEEeCCCeEEEEcccceEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCC-CCCHH Confidence 23444 4567888999999999998777899999999999999999999999999999999999999999875 68999 Q ss_pred HHHHHHHHHHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhcccccccccc Q lcl|Aclame:pro 220 DIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSL 298 (344) Q Consensus 220 ~~~~lk~~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~ 298 (344) +.+++++.|++ +.|.+|+++++|| +.|++|+|++.+++|+||+|++++++++||++|||||++||+. +.+++ T Consensus 235 ~~~~~~~~~~~~~~g~~n~~~~~vl-----~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVpp~~lg~~--~~~~~ 307 (422) T protein:vir:13 235 AKKIFKKEFESMSNGLENAHSISLL-----PFGYQFQPISLSMADAQFLENSKLTKRELAATFGMKSYHLNDL--ERATF 307 (422) T ss_pred HHHHHHHHHHHHhcCccccCCceec-----CCCceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC--CCCCc Confidence 99999999976 5677899999999 4688999999999999999999999999999999999999985 44689 Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 299 GDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 299 ~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) +|+|++.+.|+++||+|++++|| ++|++|.++..+...|.++||-. T Consensus 308 sn~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~i~fd~~ 354 (422) T protein:vir:13 308 NNLTEQQKDFYVTTLQSSLTVYEQEIQDKLFSQYETLQDVKAEFNVD 354 (422) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhcCCceEEeech Confidence 99999999999999999999998 79999987654444555555433 No 28 >protein:vir:10362 Length: 432 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858954;genbank:gi:32128419;genbank:GeneID:2648396 Probab=100.00 E-value=8.9e-67 Score=382.69 Aligned_cols=325 Identities=13% Similarity=0.125 Sum_probs=248.3 Q ss_pred CCCCCCCCCCCchhhc------cccccc--------eEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKM------TASAPK--------MEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSL 66 (344) Q Consensus 1 msk~~~~~~~~~~~~~------~~~~~~--------~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~ 66 (344) |++.|.--..+.+.+. ++.... ..+-..-+++.+|.+++|++||.+|+++.+ ++|+.+++..... T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~v~~~~al~~~~V~~~i~~Ia~~ia-~lp~~~y~~~~~g 88 (432) T protein:vir:10 10 LGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAIA-AMPLTMYMRTPDG 88 (432) T ss_pred hhhhHhhcCCccccccccccccccCcchhhhhcccccccCcccchhhhhcchHHHHHHHHHHHhhh-hCceeEEEecCCC Confidence 3322222111111100 000000 000011135679999999999999987755 7888876432211 Q ss_pred hcchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc--eE Q lcl|Aclame:pro 67 RAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--VY 143 (344) Q Consensus 67 ~~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~--~~ 143 (344) +.. .+.+. -..++..+||+++++++|++. +.+++++||||++++|+ .|++++|+|++|..|++..+.+ .+ T Consensus 89 ~~~-----~~~~~-l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~-~g~~~~L~~l~~~~v~v~~~~~g~~~ 161 (432) T protein:vir:10 89 RKE-----AVNHP-LYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT-DGRIESLQYLANDRLTITTDTKGNTA 161 (432) T ss_pred ccc-----ccccH-HHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCCceEEEEcCCCcEE Confidence 110 11111 124556789999999999875 55889999999999998 4999999999999998876443 34 Q ss_pred E-EEcCCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHH Q lcl|Aclame:pro 144 W-WVPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIE 222 (344) Q Consensus 144 y-~~~~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~ 222 (344) | ....+|..+.|+++||||+|.++ .++++|+||+..++++++++.++++|..++|+||++|+|||++++ .+++|+++ T Consensus 162 y~~~~~~g~~~~~~~~~iih~~~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~-~l~~e~~~ 239 (432) T protein:vir:10 162 YRYRRTDGQMIDIPKQQIWKIMGYS-LDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDR-FLTDDQYD 239 (432) T ss_pred EEEEecCceEEEEcCccEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCC-CCCHHHHH Confidence 4 34567888899999999999875 578999999999999999999999999999999999999999864 68999999 Q ss_pred HHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccc-cccccccH Q lcl|Aclame:pro 223 MLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPE-NVGSLGDI 301 (344) Q Consensus 223 ~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~-~~~~~~n~ 301 (344) ++++.|+ |..|+++++|| +.|++|++++++++|+||+|++++++++||++|||||++||+.+. +.++++|+ T Consensus 240 ~~~~~~~---~~~nag~~~vl-----~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~t~~~~sn~ 311 (432) T protein:vir:10 240 SFAKKVS---GSVEAGRAPLL-----EGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGI 311 (432) T ss_pred HHHHHHh---hhhhCCCceec-----CCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCcccccchH Confidence 9988884 56789999999 458899999999999999999999999999999999999998764 34567899 Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 302 EKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 302 e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) |++.+.|+++||.||+++|| +||++|..+..+ ..|.++||-- T Consensus 312 e~~~~~f~~~tl~P~~~~ie~~ln~kL~~~~~~-~~~~~~fd~~ 354 (432) T protein:vir:10 312 ESQQLGFLSMTLSPWLRRIEQSIALNLLSPAER-RRYFADFDTS 354 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccc-CceEEEeech Confidence 99999999999999999998 699999776443 3344555432 No 29 >protein:vir:5737 Length: 419 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892048;genbank:gi:33770511;goa:Q7Y412;interpro:IPR006427;interpro:IPR006944;uniprot:Q7Y412;genbank:GeneID:1732929;interpro:IPR010994 Probab=100.00 E-value=9.9e-67 Score=382.45 Aligned_cols=325 Identities=11% Similarity=0.099 Sum_probs=251.2 Q ss_pred CCCCCCCCCCCchhhc-cc---cc---cceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHh--hcchh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKM-TA---SA---PKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSL--RAAVH 71 (344) Q Consensus 1 msk~~~~~~~~~~~~~-~~---~~---~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~--~~~~~ 71 (344) |.-.+.=+.++..... .. .. ....+...-+++.+|.+++|++||.+|+++.+ ++|+.+++..+.. +.... T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~ia~~ia-~lp~~~~~~~~~g~~~~~~~ 79 (419) T protein:vir:57 1 MFIPQFWKGRPSENRVNWQVVPGGMRSSSSQAGVIITPETALALSAVRACVTLLAESVA-QLPCVLYRRTENGGREIAFD 79 (419) T ss_pred CcchhhhccCCccccccccccccccccccccCCceechHHhhccHHHHHHHHHHHHhhc-cCceEEEEEcCCCceecccc Confidence 6433221111111100 00 00 01111112246789999999999999987654 7888875432211 11111 Q ss_pred hhhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc--eEEEEcC Q lcl|Aclame:pro 72 HSSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--VYWWVPS 148 (344) Q Consensus 72 ~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~--~~y~~~~ 148 (344) | .-..++..+||+++++++|++. +.+++++||+|++|+|+..|++++|+|++|.+|++..+.+ .||.+.. T Consensus 80 ~-------~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~pl~~~~v~v~~~~~g~~~y~~~~ 152 (419) T protein:vir:57 80 H-------PLHDLIRYQPNRKDTAFEYHEQTQGVLGLEGNSYSLIDRNGRGDITELIPINPHKVIVLKGPDGMPYYDIPS 152 (419) T ss_pred c-------hHHHHHhhccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCcceEEEECCCceEEEEEcC Confidence 1 1124456789999999999864 5688999999999999999999999999999999877654 3566655 Q ss_pred CceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCC---CCCCHHHHHHHH Q lcl|Aclame:pro 149 FNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTD---AVQDRNDIEMLR 225 (344) Q Consensus 149 ~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~---~~l~~e~~~~lk 225 (344) .+ ..++++||||+|.++ .++++|+||+..++.++.++.++++|+.++|+||++|+|+|+++. +.+++++.++++ T Consensus 153 ~~--~~~~~~~vih~r~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~e~~~~~~ 229 (419) T protein:vir:57 153 IG--EILPMRMVHHIKSFS-LDGYIGTSPIQTNPDVLGLGIAVEQHAAQVFARGTTMSGVIERPFEAKAIASQAAVDAIL 229 (419) T ss_pred Cc--eEEchhhEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEecCcCCcccCHHHHHHHH Confidence 55 368899999999875 578999999999999999999999999999999999999999753 467899999999 Q ss_pred HHHHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHH Q lcl|Aclame:pro 226 ENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKV 304 (344) Q Consensus 226 ~~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~ 304 (344) +.|++ +.|..|++++++| +.|++|++++++++|+||+|++++++++||++|||||++||+. +.++++|+|++ T Consensus 230 ~~~~~~~~g~~nag~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~--~~~t~sn~e~~ 302 (419) T protein:vir:57 230 AKWTERYGGVRNAFSVGML-----QEGMTYKQLSQDNEKAQLLQSRQYTVNEVCRLYKVPPHMIQDL--QKSTNNNIEHQ 302 (419) T ss_pred HHHHHHhccccccccceec-----CCCceEEEcCCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCC--CCCccccHHHH Confidence 99965 6677899999999 4688999999999999999999999999999999999999985 44789999999 Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 305 AKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 305 ~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) .+.|+++||+|+++.|| +||++|.++..+ ..|.++||-- T Consensus 303 ~~~f~~~~l~P~~~~ie~~l~~~ll~~~~~-~~~~i~fd~~ 342 (419) T protein:vir:57 303 GLQYVIYTMLAILKRHESAMMRDLLLPSER-RDFYIEFNVS 342 (419) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcccc-CCeEEEEech Confidence 99999999999999998 799999776443 2444444322 No 30 >protein:vir:6240 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Probab=100.00 E-value=1.3e-66 Score=381.86 Aligned_cols=328 Identities=17% Similarity=0.186 Sum_probs=247.8 Q ss_pred CC------CCCCCCCCCchhh-ccc-cccceEEE---Ec----CCccccccchhHHHHhhhhhcCcceeccccHHHHHHH Q lcl|Aclame:pro 1 MS------KKKGKTLQPAAKK-MTA-SAPKMEAF---TF----GEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKS 65 (344) Q Consensus 1 ms------k~~~~~~~~~~~~-~~~-~~~~~~~~---~~----~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~ 65 (344) |. +|++++..+.... ... ..+....+ +. -+++.+|.+++|++||.+|+...+ ++|+.+++.... T Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~ia~~iA-~lp~~~~~~~~~ 79 (457) T protein:vir:62 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIA-TLPLSTYSKRGG 79 (457) T ss_pred CchhhhhhccccccccccccccccccchhhhhhccccccCCceechHHhhccHHHHHHHHHHHHhHh-hCceEEEEecCC Confidence 54 2322222221111 111 11111000 11 135678999999999999987654 888887653221 Q ss_pred hhcchhhhhhhhhhhhhHHHhcccCCCCCHHHHHH-HHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc--- Q lcl|Aclame:pro 66 LRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSR-FVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--- 141 (344) Q Consensus 66 ~~~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~-~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~--- 141 (344) .+. .+.. .....+..+||+++++.+|++ ++.+++++||+|++|+++ .|++++|+|++|..|++..+.. T Consensus 80 ~~~------~~~~-~~~~~ll~~pn~~~t~~~f~~~~~~~l~l~Gna~~~i~~~-~g~~~~l~~l~p~~v~v~~~~~~~~ 151 (457) T protein:vir:62 80 TRK------EIDT-PEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGL 151 (457) T ss_pred ccc------cccc-hHHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCcceEEEEeccCCc Confidence 111 1111 122334457888888888876 556889999999999776 5999999999999998754321 Q ss_pred ---e--EEEEcCCce---EEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCC Q lcl|Aclame:pro 142 ---V--YWWVPSFNE---PTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTD 213 (344) Q Consensus 142 ---~--~y~~~~~~~---~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~ 213 (344) . .|.+...+. ...|+++||||+|.+++.++++|+||+..++.+|+++.++++|+.++|+||++|+|||++++ T Consensus 152 ~~~~~~~y~~~~~g~~~~~~~~~~~eiih~r~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~ 231 (457) T protein:vir:62 152 RRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPG 231 (457) T ss_pred cceeEEEEEEccCCceeEEEeeCccceEEecCCCCCCceecccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEcCC Confidence 1 233444433 24689999999999988777999999999999999999999999999999999999999875 Q ss_pred CCCCHHHHHHHHHHHHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhcccc Q lcl|Aclame:pro 214 AVQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKP 292 (344) Q Consensus 214 ~~l~~e~~~~lk~~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~ 292 (344) .+++|+++++++.|++ ++|..|+++++||+ .|++|+|++++++|+||+|++++++++||++|||||++||+.+ T Consensus 232 -~ls~e~~~~~~~~~~~~~~G~~nag~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~ 305 (457) T protein:vir:62 232 -TMSEEGLARAREAWRAANSGVDNAHRVALLT-----EGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDAT 305 (457) T ss_pred -CCCHHHHHHHHHHHHHHhcCccccCcceecC-----CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCC Confidence 6899999999999976 56779999999994 5889999999999999999999999999999999999999988 Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 293 ENVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 293 ~~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) +++.+++|+|++.+.|+++||+||+++|| +||++|..+..+ +.+.++|+-. T Consensus 306 ~~~~~~sn~eq~~~~f~~~~l~P~~~~ie~~ln~~L~~~~~~-~~~~i~fd~~ 357 (457) T protein:vir:62 306 NSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETAD-RFRFVKFNLD 357 (457) T ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccc-CceEEEeech Confidence 77777899999999999999999999998 799999876433 2333333321 No 31 >protein:vir:102118 Length: 409 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699943;genbank:gi:110804051;genbank:GeneID:4206661 Probab=100.00 E-value=2e-66 Score=380.82 Aligned_cols=327 Identities=15% Similarity=0.203 Sum_probs=252.3 Q ss_pred CCCCCC--CCCCCchhhc---cccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhh Q lcl|Aclame:pro 1 MSKKKG--KTLQPAAKKM---TASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSP 75 (344) Q Consensus 1 msk~~~--~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~ 75 (344) |==+|. ++.+...... ..--+....-..-++..+|.+++|++||.+|++..+ ++|+.+++..+.......|. T Consensus 1 m~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia-~lp~~~~~~~~~~~~~~~~~-- 77 (409) T protein:vir:10 1 MLFRKGFKNQSQEISIDDKKILEWLGINPSETYVNGKSCLKQATVFGCIRILSDNIS-KLPIKIYQKKDGIKRVPDHY-- 77 (409) T ss_pred CcccccccCcCCCCCCChHHHHHHhcCCcCcceechhhhhccHHHHHHHHHHHHhhh-hCceEEEEecCCeeeccCch-- Confidence 322221 2111110000 000011111123356788999999999999987755 78888754322111111111 Q ss_pred hhhhhhhHHHhcccCCCCCHHHHHH-HHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc--------eEEE- Q lcl|Aclame:pro 76 IYVKRNILASTFIPHPWLSQQDFSR-FVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--------VYWW- 145 (344) Q Consensus 76 i~~~~~~~~~~~~pn~~~~~~~f~~-~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~--------~~y~- 145 (344) -..++..+||+++++++|++ ++.+++++||||++++|+..|++++|+|++|.+|++..+.. .+|. T Consensus 78 -----l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~V~v~~~~~~~~~~~~~~~y~~ 152 (409) T protein:vir:10 78 -----LEYLLKLRPNPYMSSSDFWKCIEVQRNIYGNAYVALDFKKNGEIKGLYPLKSDGMKIFVDDTGLLNSENNVWYLY 152 (409) T ss_pred -----HHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCCceEEEEcCCccccccceEEEEE Confidence 12456678999999999986 55689999999999999999999999999999998765432 1233 Q ss_pred EcCCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHH Q lcl|Aclame:pro 146 VPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLR 225 (344) Q Consensus 146 ~~~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk 225 (344) ....|....|+++||||+|.+++ ++++|+||+..+.++++++.++++++.++|+||++|+|||++++ .+++++.++++ T Consensus 153 ~~~~g~~~~~~~~evih~r~~~~-d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~-~l~~e~~~~~~ 230 (409) T protein:vir:10 153 TDDLGQRHKFMSDEILHFKGLTA-DGLAGLSVIELLNHLIENGKSSETYLNNFFKNGLQVKGLVQYAG-DLNPEAEEVFK 230 (409) T ss_pred EeCCceeEEeccccEEEecCcCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCC-CCCHHHHHHHH Confidence 34567788999999999998875 68999999999999999999999999999999999999999864 68999999999 Q ss_pred HHHHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHH Q lcl|Aclame:pro 226 ENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKV 304 (344) Q Consensus 226 ~~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~ 304 (344) +.|++ +.|..|+++++|+ +.|++|+|++.+++|+||+|++++++++||++|||||++||+. +.++++|+|++ T Consensus 231 ~~~~~~~~g~~n~~~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~--~~~~~~~~e~~ 303 (409) T protein:vir:10 231 ENFERMSSGLKNAHRIAML-----PIGYKFEPISQKLVDAQFLENSQLTIRQIASVFGVKMHQLNDL--DRATHSNITEQ 303 (409) T ss_pred HHHHHHhccccccCCceec-----CCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHcCCC--CCCccccHHHH Confidence 99977 5677899999999 4688999999999999999999999999999999999999985 34689999999 Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 305 AKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 305 ~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) .+.|+++||.|+++.|| +||++|..+..+-..|.++||-- T Consensus 304 ~~~f~~~~l~P~~~~ie~~ln~kL~~~~~~~~~~~~~fd~~ 344 (409) T protein:vir:10 304 NREFYIDTLQSILNMYELEINYKLFLISEIKNGFYSKFNVD 344 (409) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhccCCcEEEEech Confidence 99999999999999998 79999976543323344444322 No 32 >protein:vir:97060 Length: 432 # NCBI annotation: putative head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453563;genbank:gi:84662598;genbank:GeneID:5142475 Probab=100.00 E-value=1.4e-66 Score=381.70 Aligned_cols=325 Identities=13% Similarity=0.123 Sum_probs=247.3 Q ss_pred CCCCCCCCCCCchhh------ccccccceEE----EE----cCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKK------MTASAPKMEA----FT----FGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSL 66 (344) Q Consensus 1 msk~~~~~~~~~~~~------~~~~~~~~~~----~~----~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~ 66 (344) |++.|.--..+.+.. .+........ .+ .-+++.+|.+++|++||.+|+++.+ ++|+.+++..... T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~a~~~~aV~~~v~~Ia~~ia-~lp~~~y~~~~~g 88 (432) T protein:vir:97 10 LGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAVA-AMPLMMYMRTPDG 88 (432) T ss_pred hhhhHhhcCCccccccccccccccCchhhhhhcccccccCcccchHhhhcchHHHHHHHHHHHhhc-cCceEEEEecCCC Confidence 333222211111110 0000000000 01 1145679999999999999987755 8888876532211 Q ss_pred hcchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccC--ceE Q lcl|Aclame:pro 67 RAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEE--DVY 143 (344) Q Consensus 67 ~~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~--~~~ 143 (344) +.. .+.+. -..++..+||+++++++|++. +.+++++||+|++++|+. |++++|+|++|..|++..+. ..+ T Consensus 89 ~~~-----~~~~p-l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~~-g~~~~L~~l~p~~v~v~~~~~g~~~ 161 (432) T protein:vir:97 89 RKE-----AVNHP-LYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVTD-GRIESLQYLANDRLTITTDTKGNTA 161 (432) T ss_pred ccc-----ccccH-HHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEecC-CcEEEEEEEcCcceEEEEcCCCcEE Confidence 100 11111 124556789999999999875 458999999999999984 99999999999999887543 334 Q ss_pred EEE-cCCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHH Q lcl|Aclame:pro 144 WWV-PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIE 222 (344) Q Consensus 144 y~~-~~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~ 222 (344) |.+ ..+|..+.++++||||+|.++ .++++|+||+..++++++++.++++|..++|+||++|+|||++++ .+++|+++ T Consensus 162 y~~~~~~g~~~~~~~~~iih~r~~~-~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil~~~~-~l~~e~~~ 239 (432) T protein:vir:97 162 YRYRRTDGQMIDIPRQQIWKIMGYS-LDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDR-FLTDDQYD 239 (432) T ss_pred EEEEecCceEEEEccccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeEecCC-CCCHHHHH Confidence 444 456788899999999999875 578999999999999999999999999999999999999999865 68999999 Q ss_pred HHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhcccccc-ccccccH Q lcl|Aclame:pro 223 MLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPEN-VGSLGDI 301 (344) Q Consensus 223 ~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~-~~~~~n~ 301 (344) ++++.|. |..|+++++|| +.|++|++++++++|+||+|++++++++||++|||||++||+.+.+ .++++|+ T Consensus 240 ~~~~~~~---~~~nag~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~~s~~ 311 (432) T protein:vir:97 240 SFSKKVS---GSVEAGRAPLL-----EGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGI 311 (432) T ss_pred HHHHHHh---hhhcCCCceec-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCcccccchhH Confidence 9888774 56789999999 4688999999999999999999999999999999999999987543 3456899 Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 302 EKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 302 e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) |++.+.|+++||+||++.|| +||++|.....+ ..|.++||.. T Consensus 312 e~~~~~f~~~tl~P~~~~ie~~ln~kLl~~~e~-~~~~~~fd~~ 354 (432) T protein:vir:97 312 ESQQLGFLTMTLSPWLRRIEQSIALNLLTPAER-RRYFADFDTS 354 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCcccc-CceEEEeech Confidence 99999999999999999998 699999765443 3344444432 No 33 >protein:vir:81072 Length: 432 # NCBI annotation: p07 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285677;genbank:gi:148727185;genbank:GeneID:5247117 Probab=100.00 E-value=3.3e-66 Score=379.59 Aligned_cols=325 Identities=13% Similarity=0.111 Sum_probs=246.5 Q ss_pred CC--------CCCC-------CCCCCchhhccccccc---eEEE-E----cCCccccccchhHHHHhhhhhcCcceeccc Q lcl|Aclame:pro 1 MS--------KKKG-------KTLQPAAKKMTASAPK---MEAF-T----FGEPVPVLDRRDILDYVECISNGRWYEPPI 57 (344) Q Consensus 1 ms--------k~~~-------~~~~~~~~~~~~~~~~---~~~~-~----~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~ 57 (344) |+ +|.+ ...+......+..... ...+ + .-+++.+|.+++|++||.+|+++.+ ++|+ T Consensus 1 ~~~~~~mg~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~V~~~i~~Ia~~ia-~lp~ 79 (432) T protein:vir:81 1 MPDEKKLGLFGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAIA-AMPL 79 (432) T ss_pred CCchhhcchhhhhhhhcccccccccccccccccCccchhhhcccccccCcccchHhhhccHHHHHHHHHHHHhhh-hCce Confidence 11 1211 1111110000000000 0000 1 1135689999999999999987754 7888 Q ss_pred cHHHHHHHhhcchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHHH-HHHHhcCCeEEEEEECCCCceEEEEEecCcceec Q lcl|Aclame:pro 58 SFTGLAKSLRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFV-LDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRR 136 (344) Q Consensus 58 ~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~~-~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~ 136 (344) .+++..+..+.. +..+. -..++..+||+++++++|++.+ .+++++||||+++.|+. |++++|+|++|..|++ T Consensus 80 ~~y~~~~~g~~~-----~~~~~-l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnayv~i~~~~-g~~~~L~~l~~~~v~v 152 (432) T protein:vir:81 80 TMYMRTPDGRKE-----AVNHP-LYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVTD-GRIESLQYLANDRLTI 152 (432) T ss_pred eeEEecCCccee-----cccch-HHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEecC-CcEEEEEEEcCCceEE Confidence 875432211110 11111 1245567899999999998755 58899999999999974 9999999999999988 Q ss_pred cccCc--eEEEE-cCCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCC Q lcl|Aclame:pro 137 GVEED--VYWWV-PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTD 213 (344) Q Consensus 137 ~~~~~--~~y~~-~~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~ 213 (344) ..+.+ .+|.+ ..+|..+.++++||||+|.++ .++++|+||+..++++|+++.++++|..++|+||++|+|||+++ T Consensus 153 ~~~~~g~~~y~~~~~~g~~~~~~~~~iih~r~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~- 230 (432) T protein:vir:81 153 TTDPKGNTAYRYRRTDGQMIDIPKQQIWKIMGYS-LDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQID- 230 (432) T ss_pred EECCCCcEEEEEEecCceEEEEccccEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecC- Confidence 76543 34444 567888899999999999875 57899999999999999999999999999999999999999986 Q ss_pred CCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccc Q lcl|Aclame:pro 214 AVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPE 293 (344) Q Consensus 214 ~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~ 293 (344) +.+++|+++++++.|+ |..|++++++| +.|++|++++++++|+||+|++++++++||++|||||++||+.+. T Consensus 231 ~~l~~e~~~~~~~~~~---~~~nag~~~vl-----~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~ 302 (432) T protein:vir:81 231 RFLTDDQYDSFAKKVS---GSVEAGRAPLL-----EGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSA 302 (432) T ss_pred CCCCHHHHHHHHHHHh---hhhcCCCceec-----CCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCC Confidence 4689999999988874 56789999999 468899999999999999999999999999999999999998765 Q ss_pred c-ccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 294 N-VGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 294 ~-~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) + .++++|+||+.+.|+++||.||+++|| +||++|..+..+ ..|.++||-- T Consensus 303 ~~~~~~sn~eq~~~~f~~~tl~P~~~~ie~~l~~kLl~~~~~-~~~~~~fd~~ 354 (432) T protein:vir:81 303 GTTSWGSGIESQQLGFLTMTLSPWLRRIEQSIALNLLSPAER-RRYFADFDTS 354 (432) T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc-CceEEEeech Confidence 3 356789999999999999999999998 799999776443 2344444322 No 34 >protein:vir:79984 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430000;genbank:gi:156604055;genbank:GeneID:5525444 Probab=100.00 E-value=3.3e-66 Score=379.59 Aligned_cols=319 Identities=16% Similarity=0.185 Sum_probs=238.8 Q ss_pred CCCCC---------------CCCCCCchhh--cc-ccccc--eEEEEcCCccccccchhHHHHhhhhhcCcceeccccHH Q lcl|Aclame:pro 1 MSKKK---------------GKTLQPAAKK--MT-ASAPK--MEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFT 60 (344) Q Consensus 1 msk~~---------------~~~~~~~~~~--~~-~~~~~--~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~ 60 (344) =|||. +|..+..... .. ...+. ......-.++.+|++++||+||.+|+++.+ ++|+.++ T Consensus 14 ~~~~~~~~~~~~~~lf~~~e~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~~cv~~Ia~~iA-~lp~~~~ 92 (441) T protein:vir:79 14 KSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLA-RMPIRVT 92 (441) T ss_pred cccccchhhhhccccccccccccccCCCcchHHHHHHhcccCcccccccchhhhhccHHHHHHHHHHHHhhc-cCceeee Confidence 11111 1111100000 00 00000 001112235678999999999999987755 7888775 Q ss_pred HHHHHhhcchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceecccc Q lcl|Aclame:pro 61 GLAKSLRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVE 139 (344) Q Consensus 61 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~ 139 (344) +-. +....|. ...++..+||+++++.+|++. +.+++++||||++|+|+..|+|++|+|++|..|++..+ T Consensus 93 ~~~---~~~~~~~-------~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d 162 (441) T protein:vir:79 93 VNG---QINYSDR-------IVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSD 162 (441) T ss_pred cCc---cccccch-------HHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEC Confidence 411 1111111 124556789999999999865 56889999999999999999999999999999988765 Q ss_pred Cc--eEEEEc-----CCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeC Q lcl|Aclame:pro 140 ED--VYWWVP-----SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVT 212 (344) Q Consensus 140 ~~--~~y~~~-----~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~ 212 (344) .+ .+|.+. ..+....++++||||+|.++ .++++|+||+.+++++++++.++++|..++|+||++|+|||+++ T Consensus 163 ~~g~~~~~~~~~~~~~~~~~~~~~~~dvih~k~~~-~dg~~G~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~ 241 (441) T protein:vir:79 163 ARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMK 241 (441) T ss_pred CCccEEEEEEEeccCCceeEEEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcC Confidence 43 333332 23445789999999999775 57899999999999999999999999999999999999999998 Q ss_pred CCCCCHHHHHHHHHHHHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccc Q lcl|Aclame:pro 213 DAVQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGK 291 (344) Q Consensus 213 ~~~l~~e~~~~lk~~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~ 291 (344) +...++++++++++.|++ +.|..|+|+++|| ++|++|+|++++++|+||+|++++++++||++|||||++||+. T Consensus 242 ~~~~~~e~~e~~r~~~~~~~~G~~nag~~~vl-----~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~ 316 (441) T protein:vir:79 242 GVLDNKKARDRAREEFHKSFSGTKQAGKVVVL-----DESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIE 316 (441) T ss_pred CCCCCHHHHHHHHHHHHHHhcCccccCcceec-----CCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCC Confidence 776688999999999976 5678999999999 4688999999999999999999999999999999999999963 Q ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 292 PENVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 292 ~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) . .+ ++++++...| .+||+|++++|| +||++|.++. ..|.++||-. T Consensus 317 ~---~~-~s~~q~~~~~-~~tl~P~~~~ie~eln~kl~~~~---~~~~~~fd~~ 362 (441) T protein:vir:79 317 T---AN-MSITDANLDY-LSTLKPYITCVCAELNFKFNDEY---VNREFKFDTT 362 (441) T ss_pred C---CC-ccHHHHHHHH-HHHHHHHHHHHHHHHhhhccccc---cCceEEeech Confidence 2 22 3567776665 569999999998 7999997653 2333344322 No 35 >protein:vir:9408 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803386;genbank:gi:29028698;genbank:GeneID:1258164 Probab=100.00 E-value=3.3e-66 Score=379.59 Aligned_cols=319 Identities=16% Similarity=0.185 Sum_probs=238.8 Q ss_pred CCCCC---------------CCCCCCchhh--cc-ccccc--eEEEEcCCccccccchhHHHHhhhhhcCcceeccccHH Q lcl|Aclame:pro 1 MSKKK---------------GKTLQPAAKK--MT-ASAPK--MEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFT 60 (344) Q Consensus 1 msk~~---------------~~~~~~~~~~--~~-~~~~~--~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~ 60 (344) =|||. +|..+..... .. ...+. ......-.++.+|++++||+||.+|+++.+ ++|+.++ T Consensus 14 ~~~~~~~~~~~~~~lf~~~e~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~~cv~~Ia~~iA-~lp~~~~ 92 (441) T protein:vir:94 14 KSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLA-RMPIRVT 92 (441) T ss_pred cccccchhhhhccccccccccccccCCCcchHHHHHHhcccCcccccccchhhhhccHHHHHHHHHHHHhhc-cCceeee Confidence 11111 1111100000 00 00000 001112235678999999999999987755 7888775 Q ss_pred HHHHHhhcchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceecccc Q lcl|Aclame:pro 61 GLAKSLRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVE 139 (344) Q Consensus 61 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~ 139 (344) +-. +....|. ...++..+||+++++.+|++. +.+++++||||++|+|+..|+|++|+|++|..|++..+ T Consensus 93 ~~~---~~~~~~~-------~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d 162 (441) T protein:vir:94 93 VNG---QINYSDR-------IVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSD 162 (441) T ss_pred cCc---cccccch-------HHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEC Confidence 411 1111111 124556789999999999865 56889999999999999999999999999999988765 Q ss_pred Cc--eEEEEc-----CCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeC Q lcl|Aclame:pro 140 ED--VYWWVP-----SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVT 212 (344) Q Consensus 140 ~~--~~y~~~-----~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~ 212 (344) .+ .+|.+. ..+....++++||||+|.++ .++++|+||+.+++++++++.++++|..++|+||++|+|||+++ T Consensus 163 ~~g~~~~~~~~~~~~~~~~~~~~~~~dvih~k~~~-~dg~~G~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~ 241 (441) T protein:vir:94 163 ARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMK 241 (441) T ss_pred CCccEEEEEEEeccCCceeEEEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcC Confidence 43 333332 23445789999999999775 57899999999999999999999999999999999999999998 Q ss_pred CCCCCHHHHHHHHHHHHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccc Q lcl|Aclame:pro 213 DAVQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGK 291 (344) Q Consensus 213 ~~~l~~e~~~~lk~~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~ 291 (344) +...++++++++++.|++ +.|..|+|+++|| ++|++|+|++++++|+||+|++++++++||++|||||++||+. T Consensus 242 ~~~~~~e~~e~~r~~~~~~~~G~~nag~~~vl-----~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~ 316 (441) T protein:vir:94 242 GVLDNKKARDRAREEFHKSFSGTKQAGKVVVL-----DESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIE 316 (441) T ss_pred CCCCCHHHHHHHHHHHHHHhcCccccCcceec-----CCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCC Confidence 776688999999999976 5678999999999 4688999999999999999999999999999999999999963 Q ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 292 PENVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 292 ~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) . .+ ++++++...| .+||+|++++|| +||++|.++. ..|.++||-. T Consensus 317 ~---~~-~s~~q~~~~~-~~tl~P~~~~ie~eln~kl~~~~---~~~~~~fd~~ 362 (441) T protein:vir:94 317 T---AN-MSITDANLDY-LSTLKPYITCVCAELNFKFNDEY---VNREFKFDTT 362 (441) T ss_pred C---CC-ccHHHHHHHH-HHHHHHHHHHHHHHHhhhccccc---cCceEEeech Confidence 2 22 3567776665 569999999998 7999997653 2333344322 No 36 >protein:vir:4454 Length: 414 # NCBI annotation: Portal Protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700377;genbank:gi:23505449;genbank:GeneID:955656 Probab=100.00 E-value=6.4e-66 Score=378.00 Aligned_cols=325 Identities=15% Similarity=0.220 Sum_probs=249.5 Q ss_pred CC------CCCCCCCCCchhhccccc-cceEEEE--cCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhh-cch Q lcl|Aclame:pro 1 MS------KKKGKTLQPAAKKMTASA-PKMEAFT--FGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLR-AAV 70 (344) Q Consensus 1 ms------k~~~~~~~~~~~~~~~~~-~~~~~~~--~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~-~~~ 70 (344) |. +||.......+....... .....++ .-+++.+|.+++|++||.+|+++.+ +.|+.+++..+..+ ... T Consensus 1 Mg~f~~lf~r~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~Ia~~ia-~~p~~~~~~~~~~~~~~~ 79 (414) T protein:vir:44 1 MVFFSGLFQRKSDAPVTTPAELADAIGLSYDTYTGKQISSQRAMRLTAVFSCVRVLAESVG-MLPCNLYHLNGSLKQRAT 79 (414) T ss_pred CchhhhhhccCccCcccchhhHhHhhccCccccCCceechhhhhccHHHHHHHHHHHHHhc-cCceEEEEecCCceeecc Confidence 33 333221111111000000 0000110 1145678999999999999987754 88888765433211 111 Q ss_pred hhhhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc--eEEEE- Q lcl|Aclame:pro 71 HHSSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--VYWWV- 146 (344) Q Consensus 71 ~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~--~~y~~- 146 (344) .|. -..++..+||++++++.|++. +.+++++||+|++++|+ .|++++|+|++|..|++..+.. .+|.+ T Consensus 80 ~~~-------~~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gna~~~i~~~-~g~~~~L~~l~~~~v~~~~~~~~~~~y~~~ 151 (414) T protein:vir:44 80 GER-------LHKLISTHPNGYMTPQEFWELVVTCLCLRGNFYAYKVKA-FGEVAELLPVDPGCVVPKLNSSWEPVYQVT 151 (414) T ss_pred cch-------HHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCceEEEEECCCCcEEEEEE Confidence 111 134566789999999999875 45889999999999998 5999999999999998765433 33443 Q ss_pred cCCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHH Q lcl|Aclame:pro 147 PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRE 226 (344) Q Consensus 147 ~~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~ 226 (344) ..+|....|+++||||+|.++ .++++|+||+..+.++++++.++++|..++|+||++|+|||++++ .+++|+.+++++ T Consensus 152 ~~~g~~~~~~~~evih~~~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~-~l~~e~~~~~~~ 229 (414) T protein:vir:44 152 FPDGSTDVLSQEDIWHVRTLT-LDGLVGLNPIAYAREAISLAAATEEHGARLFSNGAVTSGVLRTEQ-TLSDQAYERLKK 229 (414) T ss_pred ecCceEEEEccccEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCC-CCCHHHHHHHHH Confidence 456778889999999999875 578999999999999999999999999999999999999999865 689999999999 Q ss_pred HHHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHH Q lcl|Aclame:pro 227 NMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVA 305 (344) Q Consensus 227 ~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~ 305 (344) .|++ ++|.+|+++++++ +.|++|+|++.+++|+||+|++++++++||++|||||++||+. +.++++|+|++. T Consensus 230 ~~~~~~~g~~n~~~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~~--~~~t~~n~e~~~ 302 (414) T protein:vir:44 230 DFEERHTGLGNAHRPMIL-----EMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNT--DRATFNNIEELG 302 (414) T ss_pred HHHHHhcCccccCcceec-----CCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHhCCC--CCCCcccHHHHH Confidence 9965 6677999999999 4588999999999999999999999999999999999999985 447899999999 Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 306 KVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 306 ~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) +.|+++||+|++++|| +||++|.++..+ ..|.++||-. T Consensus 303 ~~~~~~~l~P~~~~ie~~ln~~L~~~~~~-~~~~i~fd~~ 341 (414) T protein:vir:44 303 LGFINYSLVPYLTRIEQRINTGLVRKSKQ-GVFYAKFNAG 341 (414) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcccc-CceEEEEech Confidence 9999999999999998 799999776432 2233333221 No 37 >protein:vir:98396 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918929;genbank:gi:119443691;genbank:GeneID:4594558 Probab=100.00 E-value=4.1e-66 Score=379.04 Aligned_cols=319 Identities=15% Similarity=0.195 Sum_probs=240.4 Q ss_pred CCCCCCCCCCCchhh--c-cccccce--EEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKK--M-TASAPKM--EAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSP 75 (344) Q Consensus 1 msk~~~~~~~~~~~~--~-~~~~~~~--~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~ 75 (344) ..|.++|..+-.... . ....+.. ...+--.++.+|.+++||+||.+|+++.+ ++|+.+++-.+ ....|. T Consensus 29 f~~~e~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~acv~~Ia~~iA-~lpl~~~~~~~---~~~~~~-- 102 (441) T protein:vir:98 29 FYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLA-RMPIRVTVNGQ---INYSDR-- 102 (441) T ss_pred ccccccccccCCCcchHHHHHHhhcccccCccccchhhhhccHHHHHHHHHHHHhhc-cCceEEecCCc---ccccch-- Confidence 112222211100000 0 0000000 00111246678999999999999987755 78888764221 111111 Q ss_pred hhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc--eEEEEc----- Q lcl|Aclame:pro 76 IYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--VYWWVP----- 147 (344) Q Consensus 76 i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~--~~y~~~----- 147 (344) -..++..+||++|++.+|++. +.+++++||||++|+|+..|+|++|+|++|..|++..+.+ .+|.+. T Consensus 103 -----~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~~~ 177 (441) T protein:vir:98 103 -----IVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKLDARGRLYYFHQRIDSN 177 (441) T ss_pred -----HHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCceeEEEECCCCcEEEEEEEeccC Confidence 234566789999999998764 5688999999999999999999999999999998865443 343332 Q ss_pred CCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 148 SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLREN 227 (344) Q Consensus 148 ~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~ 227 (344) ..+....|+++||||+|.++ .++++|+||+..++++++++.++++|+.++|+||++|+|||++++...++++++++++. T Consensus 178 ~~~~~~~~~~~dviHir~~~-~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil~~~~~~~~~e~~~~~~~~ 256 (441) T protein:vir:98 178 GNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREE 256 (441) T ss_pred cceeeEEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHHHHH Confidence 23446789999999999875 57899999999999999999999999999999999999999998766678999999999 Q ss_pred HHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHH Q lcl|Aclame:pro 228 MVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAK 306 (344) Q Consensus 228 ~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~ 306 (344) |++ +.|.+|+++++|| ++|++|+|++++++|+||+|++++++++||++|||||++||+.. . .++++++.. T Consensus 257 ~~~~~~G~~nag~~~vl-----~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~---~-~~s~~q~~~ 327 (441) T protein:vir:98 257 FHKSFSGTKQAGKVVVL-----DESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIET---A-NMSITDANL 327 (441) T ss_pred HHHHhcCccccCcceec-----CCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCC---C-CccHHHHHH Confidence 976 6677999999999 46889999999999999999999999999999999999999632 2 245678777 Q ss_pred HHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 307 VFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 307 ~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) .|. +||+||+++|| +||++|.++.. .|.++||-. T Consensus 328 ~y~-~tl~P~~~~ie~~ln~~L~~~~~---~~~~~fd~~ 362 (441) T protein:vir:98 328 DYL-STLKPYITCVCAELNFKFNDEYV---NREFKFDTT 362 (441) T ss_pred HHH-HHHHHHHHHHHHHHHhhcccccc---CceEEEech Confidence 776 59999999998 79999976532 233333322 No 38 >protein:vir:4194 Length: 540 # NCBI annotation: putative portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071819;genbank:gi:11863102;genbank:GeneID:1257604 Probab=100.00 E-value=1e-65 Score=376.93 Aligned_cols=319 Identities=16% Similarity=0.166 Sum_probs=246.4 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) ||-+.--+..+..++... ..+..-..+.|+.||+++..++++.+.+++|.+||..++ T Consensus 6 ~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~pp~~~~~La~~~~~n~~v~scI~~ia 62 (540) T protein:vir:41 6 LSIKSLEKYRAIKGDTDS-----------------------QALKEDRFEEYVEPKVHPLVLLSLLQVNPYHASACSIKA 62 (540) T ss_pred cChhhccchhhhhccccc-----------------------cccccCCCCccccCCCCHHHHHHHHHhcHHHHHHHHHHH Confidence 554443332222221110 000111223566777777777777777777777777665 Q ss_pred hhHHH-------------hcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCceEEEE Q lcl|Aclame:pro 81 NILAS-------------TFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWV 146 (344) Q Consensus 81 ~~~~~-------------~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~y~~ 146 (344) +..+. ...||+++++++|++. +.+++++||+|++++|+..|+|++|+|++|.+|++..++..|+++ T Consensus 63 ~~ia~~~~~i~~~~~~~~~~lpN~~~t~~~f~~~~v~dlll~Gnayv~i~r~~~G~~~~L~~i~~~~V~v~~~~~~~~~~ 142 (540) T protein:vir:41 63 NDILRTGYLIDGDDGGVEELLRACRPSFEFILLQALEDLQVFNYCTLEVVRDDQGEPVRLDYIPAHTVRVHRDGSRYMQT 142 (540) T ss_pred HHHhcCCceEecCccchhhhccCCCCCHHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCcceEEeEcCceeEee Confidence 54433 2359999999988765 569999999999999999999999999999999998877766544 Q ss_pred cCC--------------------ceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCc Q lcl|Aclame:pro 147 PSF--------------------NEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAG 206 (344) Q Consensus 147 ~~~--------------------~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~ 206 (344) .++ .....++++||||+|.+++.++++|+||+.+++.++.++.++++|+.+||+||++|+ T Consensus 143 ~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~eViHir~~~~~~~~~G~Spi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~ 222 (540) T protein:vir:41 143 WDGIHVTYFKDYRYEGEVNPDNGEDQDGVGANEIIFIHLPSPICSYYGVPRYLSAAPSILAMQKIDEYNYAFFDNYTIPS 222 (540) T ss_pred ecCceeeeeecccccceeeccccccceeecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCc Confidence 322 223468899999999999899999999999999999999999999999999999999 Q ss_pred eEEEeCCCCCCHH---------HHHHHHHHHHH-hhc-cccccccccccC-CCccccceeeecccchhHHHHHHHHhhhH Q lcl|Aclame:pro 207 YIMYVTDAVQDRN---------DIEMLRENMVK-SKG-RNNFKNLFLYAP-QGKADGIKIIPLSEVATKDDFFNIKKASA 274 (344) Q Consensus 207 gil~~~~~~l~~e---------~~~~lk~~~~~-~~g-~~n~~~~~vl~~-~~~~~gl~~~pl~~~~~d~q~~e~~~~~~ 274 (344) |||++++...+++ .++++++.|+. ++| .+|+|+++||+. ++.++|++|+|++++++|+||+|++++++ T Consensus 223 giL~~~g~l~~e~~~~~~~~~~~~~~~~~~~~~~~~g~~~nag~~~vLe~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~ 302 (540) T protein:vir:41 223 YVITVTGEFEDEMELGSDGEPTGRTVLQGLIEDNFKYLKEAPHTPLVFSIPGGDTVEVTFTPLNTSQKELSFREYAAEKK 302 (540) T ss_pred eEEEeCcccCchhccchHHHHHHHHHHHHHHHHHhccccccccceEEEecCCCcccceeEEecccchhHHHHHHHHHHHH Confidence 9999886543322 23566777754 444 479999999863 44567999999999999999999999999 Q ss_pred HHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 275 ADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 275 ~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) ++||++|||||++||+.+.++.+++|+|++.+.|+++||.|++++|| +||++|..+.- ..+.++|+.- T Consensus 303 ~eIa~afgVPp~~lG~~~~~~~n~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~L~~~~~--~~~~i~f~~~ 371 (540) T protein:vir:41 303 HDIAAAHMIDPYRLGITDVGPLGGNFAEVARRTYYESVVRPQQEIVSSVLTDFIQLKLD--PGARFVFNEE 371 (540) T ss_pred HHHHHHhCCCHHHcCcccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--CceEEEecch Confidence 99999999999999998777778999999999999999999999998 69999876432 1334444433 No 39 >protein:vir:1082 Length: 359 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076736;genbank:gi:13095846;genbank:GeneID:920394 Probab=100.00 E-value=7.1e-66 Score=377.76 Aligned_cols=315 Identities=14% Similarity=0.153 Sum_probs=250.5 Q ss_pred CCCCC--CCCCCCchhh---ccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhh Q lcl|Aclame:pro 1 MSKKK--GKTLQPAAKK---MTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSP 75 (344) Q Consensus 1 msk~~--~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~ 75 (344) ||-=- +++.+..+.. ..........-..-++..+|.+++|++||.+|+++.+ +.|+. .+| T Consensus 1 M~~~~~f~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~av~~cv~~ia~~ia-~~p~~-----------~~~--- 65 (359) T protein:vir:10 1 MSILNPFERRSSITPNNYYPFMVQNGSIVPNSLVDATEALKNSDLYAVTSLISSDIA-GTRFI-----------GNQ--- 65 (359) T ss_pred CcccchhhccccCCCCcchhhhhccccccCCcccCHHHhhcchHHHHHHHHHHHhhh-cCccc-----------cch--- Confidence 77521 1112211111 0111111112223467889999999999999987654 66652 111 Q ss_pred hhhhhhhHHHhcccCCCCCHHHHHHHH-HHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc-eEEEEc--CCce Q lcl|Aclame:pro 76 IYVKRNILASTFIPHPWLSQQDFSRFV-LDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED-VYWWVP--SFNE 151 (344) Q Consensus 76 i~~~~~~~~~~~~pn~~~~~~~f~~~~-~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~-~~y~~~--~~~~ 151 (344) ....+..+||++|++.+|++.+ .+++++||+|++|+|+..|+|++|+|+++..|++..+.+ .+|.+. .++. T Consensus 66 -----~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~g~~~~l~~l~~~~v~i~~~~~~~~y~~~~~~~~~ 140 (359) T protein:vir:10 66 -----VFTSVLNNPSHLTNAFSFWQTAILNLLLNGNVFLAILKGDNSLMKELRLIPSNAITIDLTDDTLTYEVNQFDDYP 140 (359) T ss_pred -----HHHHHhhcccccCCHHHHHHHHHHhccccCceEEEEEECCCCeEEEEEEeCCceEEEEEcCCeEEEEEEecCCce Confidence 2344566899999999998755 588899999999999999999999999999998865544 355553 4567 Q ss_pred EEEEecccEEEecCCC----CCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 152 PTAFAPGSVFHLLEPD----INQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLREN 227 (344) Q Consensus 152 ~~~~~~~eViH~r~~~----~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~ 227 (344) ..+|+++||||+|.++ +.++++|+||+.+++.+++++.++++|..++|+||++|+|+|+++.+.+++|+++++++. T Consensus 141 ~~~~~~~evih~~~~~~~~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l~~e~~~~~~~~ 220 (359) T protein:vir:10 141 SAKYNASEMIHVKIMAYGVDTLHNLVGHSPLESLTSEIGQQKEANRLSLSTLKGALNPTSVVKVPQGTLSSEAKDSIRKE 220 (359) T ss_pred EEEEcccceEEeccCCCCCCccCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHH Confidence 8899999999999765 348899999999999999999999999999999999999999998767999999999999 Q ss_pred HHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHH Q lcl|Aclame:pro 228 MVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKV 307 (344) Q Consensus 228 ~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~ 307 (344) |++.+|++|+|+++|| ++|++|+|++++++|+||+|++++++++||++|||||++||...+.+++++++|++... T Consensus 221 ~~~~~~~~n~g~~~vl-----~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~e~~~~~ 295 (359) T protein:vir:10 221 FEKANGGNNSGRVMVL-----DQSADFSTVSINADVANYLNSMNWGRTQIAKAFGVSDSYLNGTGDQQSSLDQIKDLYVN 295 (359) T ss_pred HHHHhCccccCCceec-----CCCcceeeecCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCcccccHHHHHHHHHH Confidence 9998899999999999 46889999999999999999999999999999999999999877677889999999999 Q ss_pred HHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 308 FVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 308 f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) |+..+|.||.+.|+ .+++++..+. .+.+++|+. T Consensus 296 ~l~~~l~p~~~~l~~~l~~~~~~~~----~~~~~~d~~ 329 (359) T protein:vir:10 296 ALNRFIEPLISELRIKCDSSIGVDM----SPITDYSNS 329 (359) T ss_pred HHHHHHHHHHHHHHHHhhhhhcccc----hhhhhcCHH Confidence 99999999988887 5776654432 233444444 No 40 >protein:vir:81152 Length: 411 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285809;genbank:gi:148747730;genbank:GeneID:5247195 Probab=100.00 E-value=8.5e-66 Score=377.34 Aligned_cols=325 Identities=15% Similarity=0.182 Sum_probs=251.2 Q ss_pred CC---CCCC--CCCCCchhhccccccceEEE---EcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhh Q lcl|Aclame:pro 1 MS---KKKG--KTLQPAAKKMTASAPKMEAF---TFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHH 72 (344) Q Consensus 1 ms---k~~~--~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~ 72 (344) |. +-++ ++.... . ..+.+....+ .-..++.+|.+++|++||.+|++..+ ++|+.+++..+..+. T Consensus 1 MG~~~~~~~~~~~~~~~-~--~~~~~~~~~~~g~~~~~~~~al~~~~V~~~v~~Ia~~iA-~lp~~~~~~~~~~~~---- 72 (411) T protein:vir:81 1 MGWWSRLTRFFRPRNET-V--DMTNPLLLQWLGVDPDTPRNQLSEATYFACLKILSESLG-KLPLKMYQKTERGIV---- 72 (411) T ss_pred CchHHHHHhhccCcccc-c--ccchHHHHHHhcCcccChhhhhccHHHHHHHHHHHHhHh-hCceeEEEecCCcee---- Confidence 43 1111 111111 0 0111111000 11236788999999999999987654 889887653321110 Q ss_pred hhhhhhhhhhHHHhcccCCCCCHHHHHHHH-HHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc--------eE Q lcl|Aclame:pro 73 SSPIYVKRNILASTFIPHPWLSQQDFSRFV-LDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--------VY 143 (344) Q Consensus 73 ~~~i~~~~~~~~~~~~pn~~~~~~~f~~~~-~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~--------~~ 143 (344) ....+. -..++..+||+++++++|++.+ .+++++||+|++++|+ .|++++|+|++|..|++..+.. .+ T Consensus 73 -~~~~~~-l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~-~g~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~ 149 (411) T protein:vir:81 73 -KSDREE-LYNLLKLRPNPYMTSSVFWSTVEMNRNHYGNAYVWCQYS-GPQLQALWILPSQYVTIVVDDRGLLGEKNAIW 149 (411) T ss_pred -eecccH-HHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEec-CCceEEEEEECCceEEEEEcCcccccccceEE Confidence 011111 1234567899999999998755 5889999999999999 4999999999999998876543 23 Q ss_pred EEE--cCCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHH Q lcl|Aclame:pro 144 WWV--PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDI 221 (344) Q Consensus 144 y~~--~~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~ 221 (344) |.+ ..+|..++|+++||||+|.+.+.++++|+||+..++.++.++.++++|..++|+||++|+|+|+++ +.+++|++ T Consensus 150 ~~~~~~~~g~~~~~~~~eiih~k~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~-~~l~~e~~ 228 (411) T protein:vir:81 150 YRYNDPYDGKMYVFRNDEILHFKTSVTFDGITGLSVRDVLKHTVDGALESQKFMNNLYKTGLTGKAVLEYT-GDLNQEAR 228 (411) T ss_pred EEEEecCCceEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeC-CCCCHHHH Confidence 444 346788899999999999776678999999999999999999999999999999999999999986 46899999 Q ss_pred HHHHHHHHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhcccccccccccc Q lcl|Aclame:pro 222 EMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGD 300 (344) Q Consensus 222 ~~lk~~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n 300 (344) +++++.|++ +.|.+|+++++++ ++|++|+|++++++|+||+|++++++++||++|||||++||+.+ .++++| T Consensus 229 ~~~~~~~~~~~~g~~n~g~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~--~~t~~n 301 (411) T protein:vir:81 229 DRLVKGFEQFANGSKNAGKIIPV-----PLGMKLVPLDIKLTDSQFFELKKYTALQIAAAFGIKPNQINDYE--KSSYAS 301 (411) T ss_pred HHHHHHHHHHhcCccccCCceec-----CCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC--CCCchh Confidence 999999976 5677899999999 46889999999999999999999999999999999999999864 468999 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 301 IEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 301 ~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) +|++.+.|+++||.|++++|| ++|++|.++..+-..+.++||-. T Consensus 302 ~e~~~~~f~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~~fd~~ 346 (411) T protein:vir:81 302 AEAQNLAFYVDTLLYVLKQYEEEITYKILSNDLISQGHYFKFNVN 346 (411) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhcCCCcEEEeech Confidence 999999999999999999998 79999976544333444444332 No 41 >protein:vir:94666 Length: 723 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579205;genbank:gi:93007441;genbank:GeneID:5076785 Probab=100.00 E-value=6.9e-66 Score=377.83 Aligned_cols=314 Identities=15% Similarity=0.116 Sum_probs=242.3 Q ss_pred CCCCCCCCCCCchhhccccccceEEEE---cC--CccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFT---FG--EPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSP 75 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~---~~--~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~ 75 (344) ||-= +++.+.-..++ +. +.+.+|.+++||+||.+|+++.+ ++|+.+++-.. +....| + T Consensus 1 ~~~~------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~V~acV~~Ia~~iA-~lpl~l~~~~~--~~~~~~--~ 63 (723) T protein:vir:94 1 MTTF------------PSGAGGWNAWSADSVFGNGAKGWSNSAVAYRCISMLANNAA-SVDLVVRGPDG--ELDELH--P 63 (723) T ss_pred Cccc------------ccCCCccccccccccccccHHHHhhhHHHHHHHHHHHHhhc-cceeEEEcCCC--ccchhh--H Confidence 3310 01111101111 10 12456889999999999987654 78887754211 111111 1 Q ss_pred hhhhhhhHHHhcccCCCCCHHHHHHHH-HHHHhcCCeEEEEEECC---CCceEEEEEecCcceeccccCc---------e Q lcl|Aclame:pro 76 IYVKRNILASTFIPHPWLSQQDFSRFV-LDFLVFGNAFLEKRYST---TGKVIRLETSPAKYTRRGVEED---------V 142 (344) Q Consensus 76 i~~~~~~~~~~~~pn~~~~~~~f~~~~-~~~ll~Gnay~~i~r~~---~G~~~~L~pl~~~~v~~~~~~~---------~ 142 (344) -..++..+||++++.+.|++.+ .+++++||+|+++.|++ .|.|++|+|+++..+.+....+ . T Consensus 64 -----l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~r~~~g~p~~l~~l~~~~~~v~~~~~~~~~~~~~~~ 138 (723) T protein:vir:94 64 -----LSQLWNVMPNRAMPAQVLKALSMTRLQLDGQCHLWLNYNGRTPAGVPDEIWYVYDRVTTIVATRAADAVPQAQII 138 (723) T ss_pred -----HHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCccccceeEEEEecCcceEEeecCCCccceeeeee Confidence 1235567899999999998765 58889999999999865 4889999999997765543221 1 Q ss_pred EEEE-cCCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHH Q lcl|Aclame:pro 143 YWWV-PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDI 221 (344) Q Consensus 143 ~y~~-~~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~ 221 (344) +|.+ ..+|..+.++++||||||.+++.++++|+||+..++.+|+++.++++|+.+||+||++|+|||+++ .+++++. T Consensus 139 ~y~~~~~~G~~~~~~~~dIiHir~~~~~dg~~G~Spi~~a~~~i~~~~aa~~~~~~~f~NG~~p~giL~~~--~l~~e~~ 216 (723) T protein:vir:94 139 GYVIERTDGVRVPVLADEMLWLRFSDPYDPLAVMAPWKAARAAVDADFYAATWQRQSFKNGARPGGVVNLG--DMDEQTF 216 (723) T ss_pred EEEEEecCceeEEecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcC--CCCHHHH Confidence 2322 356777899999999999998889999999999999999999999999999999999999999964 4899999 Q ss_pred HHHHHHHHH-hhccccccccccccCCC-----ccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccc Q lcl|Aclame:pro 222 EMLRENMVK-SKGRNNFKNLFLYAPQG-----KADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENV 295 (344) Q Consensus 222 ~~lk~~~~~-~~g~~n~~~~~vl~~~~-----~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~ 295 (344) +++++.|++ +.|..|+|+++||+++. ..+|++|+|++++++|+||+|++++++++||++|||||++||. . T Consensus 217 ~~~~~~~~~~~~G~~Nagk~~vL~g~~~~~~vl~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~i~~----~ 292 (723) T protein:vir:94 217 TKTVAAFRSQVEGVQNAGRHLLIAGQGSDGGAAGKGATFTSLSMSPAEMDYINSRMHSAEEVMLAFGIRKDALLG----G 292 (723) T ss_pred HHHHHHHHHHhhchhhcCcceeecccccccccccCCceEEEccCCHHHHHHHHHHHHhHHHHHHHhCCChhHcCC----C Confidence 999999975 67889999999997533 2469999999999999999999999999999999999999974 3 Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCC-----C Q lcl|Aclame:pro 296 GSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDN-----G 344 (344) Q Consensus 296 ~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~-----~ 344 (344) ++++|++++.+.|+++||+||+++|| +||++|.++.-. .++++|+. + T Consensus 293 st~sN~e~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~g~--~~~~~f~~~~lLr~ 345 (723) T protein:vir:94 293 STYENQAEAKAAVWTETLIPQMEVMASITDLQLLPDIGW--TVEWDFNSVPALQE 345 (723) T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccC--ceEEeecchhhhhc Confidence 67899999999999999999999999 799999765311 12333332 1 No 42 >protein:vir:101647 Length: 460 # NCBI annotation: phage portal protein # Family: family:all:26542 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112492;genbank:gi:53793592;uniprot:Q5ZGG1;genbank:GeneID:3101755 Probab=100.00 E-value=6.5e-66 Score=377.96 Aligned_cols=337 Identities=13% Similarity=0.123 Sum_probs=261.3 Q ss_pred CCCCCCCCCCCchhhccc-cccc----eEEEEc-------CCccccccchhHHHHhhhhhcCcceeccccHHHHHHH--- Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTA-SAPK----MEAFTF-------GEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKS--- 65 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~-~~~~----~~~~~~-------~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~--- 65 (344) |.+.-+|.....+..... .... +..++. -.+..++.+++||+||.+|+++. .++|+.+++.... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~v~~~v~~ia~~i-A~lp~~v~~~~~~g~~ 79 (460) T protein:vir:10 1 MANRIIRALRELTGLDNKFNDAFIKYIGQTFTKYDNNGKTYLEQGYNINPDVYSCISQMAAKT-VAVPYTIKVVKDTKAY 79 (460) T ss_pred CchhHHHHHhhhhccCCCchHHHHHhhccccCCCccchhhhhHHHHhcchHHHHHHHHHHHhh-hhCceEEEeccCCccc Confidence 877766655433222211 1011 111211 12345888999999999998764 5899887653221 Q ss_pred ----------------hhcchhhhhh--hhhhhhhHHHhcccCCCCCHHHHHHHH-HHHHhcCCeEEEEEECC----CCc Q lcl|Aclame:pro 66 ----------------LRAAVHHSSP--IYVKRNILASTFIPHPWLSQQDFSRFV-LDFLVFGNAFLEKRYST----TGK 122 (344) Q Consensus 66 ----------------~~~~~~~~~~--i~~~~~~~~~~~~pn~~~~~~~f~~~~-~~~ll~Gnay~~i~r~~----~G~ 122 (344) .+....|... .........+..+||+++|+++|++.+ .+++++||||++|+|+. .|+ T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~~~~~G~ 159 (460) T protein:vir:10 80 QQLNNLNISTKGLYSFTQSLQKNRLDTKAFSETEKAFPLESPNPTQTWADIYSLYKTYMRLNGNCYFYLMSPDDGINAGV 159 (460) T ss_pred hhhhhhhhhhhhhHHHHHHhhcchhhhcccchhHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCccCce Confidence 1111112110 011112234566899999999998765 58899999999999964 478 Q ss_pred eEEEEEecCcceeccccCce----------EEEEcCCceEEEEecccEEEecCCCCC-----CCccccccchhhHHHHHH Q lcl|Aclame:pro 123 VIRLETSPAKYTRRGVEEDV----------YWWVPSFNEPTAFAPGSVFHLLEPDIN-----QELYGLPEYLSALNSAWL 187 (344) Q Consensus 123 ~~~L~pl~~~~v~~~~~~~~----------~y~~~~~~~~~~~~~~eViH~r~~~~~-----~~~~G~sp~~~~~~~i~~ 187 (344) |++|+||+|..|++..+.+. +|.+..++....|+++||||||.+++. ++++|+||+..+++++.+ T Consensus 160 ~~~L~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~evih~r~~~~~~~~~~~~~~G~sp~~~~~~~i~~ 239 (460) T protein:vir:10 160 PSQMYVLPAHLIKIVLKDDINLLSTDSPIKSYMLIQGDQFIEFNEDEVIHTKYANPNFDLQGSHLYGMSPIRAILRNINS 239 (460) T ss_pred eEEEEEEcCceEEEEEcCCCceeeeeeeeeEEEEecCceeEEecccceEEEecCCCCcccccCccccccHHHHHHHHHHH Confidence 99999999999998765442 345566788899999999999977654 468999999999999999 Q ss_pred HHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHH-hhccccccccccccCCCccccceeeecccchhHHHH Q lcl|Aclame:pro 188 NESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDF 266 (344) Q Consensus 188 ~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~ 266 (344) +.++++|+.++|+||+.|+++++. ++.+++|+++++++.|++ +.|.+|++++++| +.|++|+|++++++|+|| T Consensus 240 ~~~~~~~~~~~f~ng~~~~~i~~~-~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl-----~~g~~~~~l~~~~~d~q~ 313 (460) T protein:vir:10 240 QNSTIDNNVKTMQNGGVFGFIHGG-STGLTQPQADSLKQRLTEMDKSPDRLSQIAGA-----SGEIAFTKISLNTDELKP 313 (460) T ss_pred HHHHHHHHHHHHhcCCCcceeeec-CCCCCHHHHHHHHHHHHHHhcCccccCCceec-----CCCceEEEccCChhHHHH Confidence 999999999999999999999875 567999999999999976 5677899999999 468899999999999999 Q ss_pred HHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 267 FNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 267 ~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) +|++++++++||++|||||++||+.++++++++|+|++.+.|+++||.||++.|| +||++|.++..+...|.++||-. T Consensus 314 ~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~kl~~~~~~~~~~~i~~d~~ 392 (460) T protein:vir:10 314 FDYLKYDQKAICNALGWSDKLLNNNEGGGLNTGNLEEERKRVVTDNIQPDLVILKQAFDKKFIKRFKGYENAVIEWDIS 392 (460) T ss_pred HHHHHHHHHHHHHHhCCCHHHhCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCceEEeecc Confidence 9999999999999999999999998777788999999999999999999999998 79999987655444454444322 No 43 >protein:vir:4156 Length: 542 # NCBI annotation: portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046965;genbank:gi:9630535;genbank:GeneID:1261709 Probab=100.00 E-value=1.8e-65 Score=375.57 Aligned_cols=320 Identities=16% Similarity=0.154 Sum_probs=237.9 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) ||=|-- .+|..+.....-+.-+.....+.++.+|+++..++++.+.++.+.+||.... T Consensus 6 ~~i~s~----------------------~~~~~i~~~~~~s~~~~~~~~~~~~~pp~~~~~la~l~~~n~~v~scI~~ia 63 (542) T protein:vir:41 6 LSIRSL----------------------EKYKAIKREEVESQALGETRFEEYVEPKVNPLVLLSLLQVNPYHASACSIKA 63 (542) T ss_pred cccccc----------------------ccchhhhhccccccccccccCCccccCCCCHHHHHHHHhhcHHHHHHHHHHH Confidence 332221 1222211111111111111122333344444444444444444444433332 Q ss_pred hh--------------HHHhcccCCCCCHHHHHH-HHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCceEEE Q lcl|Aclame:pro 81 NI--------------LASTFIPHPWLSQQDFSR-FVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWW 145 (344) Q Consensus 81 ~~--------------~~~~~~pn~~~~~~~f~~-~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~y~ 145 (344) +. .+..+.||+.+++++|++ ++.+++++||+|++++|+..|++++|+|+++.+|++..+++.|+. T Consensus 64 ~~IA~l~~~~~~~~~~~l~~~lpN~~~s~~~f~~~~v~~lll~Gnayi~i~rd~~G~~~~L~~l~~~~v~v~~d~~~~~~ 143 (542) T protein:vir:41 64 NDIIRTGYILEGDDEGVVDEFIRACKPSFEYVLLRALEDLQVFNYCTLEVVRDDRGDPIRFEYIPSHTIRVHKDGSRYRQ 143 (542) T ss_pred HHHhhCceeeecccchhhhhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCcceEEEEcCCeeEe Confidence 22 233456999999998876 456899999999999999999999999999999999887776544 Q ss_pred EcCCc--------------------eEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 146 VPSFN--------------------EPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHA 205 (344) Q Consensus 146 ~~~~~--------------------~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p 205 (344) ...+. ....++++||||+|.+++.++++|+||+.+++.++.++.++++|+.++|+||++| T Consensus 144 ~~~~~~~~~~~~y~~~~~~~~~~g~~~~~~~~~eIiHir~~~~~~~~~Glspi~~~~~~i~~~~~~~~~~~~~f~Ng~~p 223 (542) T protein:vir:41 144 TWDGVNITHFKDYRYEGEINPETGEDQDSVGANELVFIHIPSPVCSYYGVPRYVSAAPAILAMQKIDEYNYAFFDNYTIP 223 (542) T ss_pred eecCCcceeEEeecccccccccccccccccCcccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCc Confidence 32211 1234778999999999988999999999999999999999999999999999999 Q ss_pred ceEEEeCC---------CCCCHHHHHHHHHHHHH-hhcc-cccccccccc-CCCccccceeeecccchhHHHHHHHHhhh Q lcl|Aclame:pro 206 GYIMYVTD---------AVQDRNDIEMLRENMVK-SKGR-NNFKNLFLYA-PQGKADGIKIIPLSEVATKDDFFNIKKAS 273 (344) Q Consensus 206 ~gil~~~~---------~~l~~e~~~~lk~~~~~-~~g~-~n~~~~~vl~-~~~~~~gl~~~pl~~~~~d~q~~e~~~~~ 273 (344) +|||++++ ..+++++.+++++.|++ +.|. +|+|+++||+ +++.++|++|+|++++++|+||+|+++++ T Consensus 224 ~gIL~~~~~l~de~~~~~~~~~e~~~~lk~~~~~~~~g~~~n~gk~~vL~~~~~~~~g~~~~pl~~~~~d~qfle~~~~~ 303 (542) T protein:vir:41 224 SYVITVTGEFEDELEEDPDGNPTGRTVIQALIEDNFKHLKEAPHTPLVFSIPGGDTVKVTFTPLNTSQKELSFREYAAEK 303 (542) T ss_pred cEEEEeCCccccccccccccCHHHHHHHHHHHHHHHhhhhcccCceeEeeccCCcccceeEEEcCCChhHHHHHHHHHHH Confidence 99999864 35678999999999976 4554 7899999986 34456899999999999999999999999 Q ss_pred HHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 274 AADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 274 ~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) +++||++|||||++||+.++++.+++|+|++.+.|+++||+|+++.|| +||++|..+.-+ .+.++|+.. T Consensus 304 ~~~Ia~afgVPp~~lG~~~~~t~n~sn~Eq~~~~f~~~tL~P~~~~ie~~ln~~L~~~~~~--~~~~~f~~~ 373 (542) T protein:vir:41 304 KYDIAAAHMIDPYRLGIADTGPLGGNFAEVTRRTYYESVVRPQQNIISSILTDFFQVKFNP--KTRFKFNDE 373 (542) T ss_pred HHHHHHHhCCCHHHhCcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC--ceEEEecch Confidence 999999999999999998776677899999999999999999999998 699999765332 233344333 No 44 >protein:vir:102080 Length: 429 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512313;genbank:gi:89152482;genbank:GeneID:3953073 Probab=100.00 E-value=1e-65 Score=376.87 Aligned_cols=328 Identities=15% Similarity=0.173 Sum_probs=255.0 Q ss_pred CCCCC------CCCCCCchhhccccccceEEE-------EcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhh Q lcl|Aclame:pro 1 MSKKK------GKTLQPAAKKMTASAPKMEAF-------TFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLR 67 (344) Q Consensus 1 msk~~------~~~~~~~~~~~~~~~~~~~~~-------~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~ 67 (344) |+.=+ +|+..+.. ..+...+....+ -.-+++.+|.+++|++||.+|++..+ ++|+.+++..+..+ T Consensus 1 M~~~~~~f~~~~r~~~~~~-~~~~~~~~~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia-~l~~~~~~~~~~~~ 78 (429) T protein:vir:10 1 MDSVKKFFNFEKRQTSQVI-ELNKDDEKLLEWLGISPSTISVKGKNALKVATVFACIKILSESVS-KLPLKIYQEDEYGI 78 (429) T ss_pred CchhhhhhcccccCccccc-ccCCChHHHHHHhcCCCCcceechhhhhccHHHHHHHHHHHHhhc-cCceEEEEecCCce Confidence 43322 22221111 111111100000 01235678999999999999987654 78888755322111 Q ss_pred cchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc----- Q lcl|Aclame:pro 68 AAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED----- 141 (344) Q Consensus 68 ~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~----- 141 (344) .....+. -..++..+||+++++++|++. +.+++++||+|++++|+..|++++|+|+++.+|++..+.. T Consensus 79 -----~~~~~~~-l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~~~~~~ 152 (429) T protein:vir:10 79 -----QRGTKHY-LNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNS 152 (429) T ss_pred -----eeccccH-HHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccc Confidence 0111111 123455689999999998865 5688999999999999999999999999999998765432 Q ss_pred ---eEEEEcCCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCH Q lcl|Aclame:pro 142 ---VYWWVPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDR 218 (344) Q Consensus 142 ---~~y~~~~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~ 218 (344) .+|.+..+|....|+++||||+|...+.++++|+||+..++.+++++.+++++..++|+||++|+|+|++++ .+++ T Consensus 153 ~~~~~~~~~~~g~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~-~l~~ 231 (429) T protein:vir:10 153 KTKMWYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVG-DLNE 231 (429) T ss_pred cceEEEEEccCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCC-CCCH Confidence 356777888889999999999998777899999999999999999999999999999999999999999865 6899 Q ss_pred HHHHHHHHHHHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccc Q lcl|Aclame:pro 219 NDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGS 297 (344) Q Consensus 219 e~~~~lk~~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~ 297 (344) |+.+++++.|++ +.|..|+++++|+ +.|++|+|++.+++|+||+|++++++++||++|||||++||+.. .++ T Consensus 232 e~~~~~~~~~~~~~~g~~n~~~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~--~~~ 304 (429) T protein:vir:10 232 DAKKVFRENFESMSSGLQNSHRIALM-----PVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLS--KAT 304 (429) T ss_pred HHHHHHHHHHHHHhccccccCceeec-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC--CCC Confidence 999999999976 5677999999999 46889999999999999999999999999999999999999854 478 Q ss_pred cccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 298 LGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 298 ~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) ++|+|++.+.|+++||+|+++.|| ++|++|.++..+-..|.++|+-- T Consensus 305 ~sn~e~~~~~f~~~~l~P~~~~ie~~ln~kl~~~~~~~~g~~~~fd~~ 352 (429) T protein:vir:10 305 LNNIEQQQQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVD 352 (429) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeech Confidence 999999999999999999999998 79999977543333344444321 No 45 >protein:vir:107605 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338186;genbank:gi:77020175;genbank:GeneID:3703736 Probab=100.00 E-value=1.9e-65 Score=375.36 Aligned_cols=326 Identities=16% Similarity=0.186 Sum_probs=252.5 Q ss_pred CCCCCCCCCCCchhhccccccce-------EEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHh-hcchhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKM-------EAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSL-RAAVHH 72 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~-------~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~-~~~~~~ 72 (344) +..+|+...... ..+...+.. ..--.-++..++.+++|++|+.+|++..+ ++|+.+++..... +....| T Consensus 11 ~~~~~r~~~~~~--~~~~~~~~~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia-~lp~~~~~~~~~~~~~~~~~ 87 (432) T protein:vir:10 11 FNFEKRQTSQVI--ELNKDDEKLLEWLGISPSTISVKGKNALKVATVFACIKILSESVS-KLPLKIYQEDEYGIQRGTKH 87 (432) T ss_pred cCccccCccccc--ccCCchHHHHHHhCCCcCccccchhhhhccHHHHHHHHHHHHhhc-cCceEEEEecCCceeecccc Confidence 221221111111 111111100 00001235678999999999999987654 8888875432211 111111 Q ss_pred hhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccC--------ceE Q lcl|Aclame:pro 73 SSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEE--------DVY 143 (344) Q Consensus 73 ~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~--------~~~ 143 (344) . -..++..+||+++++++|++. +.+++++||+|+++.|+..|++++|+|++|..|++..+. ..+ T Consensus 88 ------~-l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~~~ 160 (432) T protein:vir:10 88 ------Y-LNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKMW 160 (432) T ss_pred ------H-HHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceEE Confidence 1 123455689999999998865 568899999999999999999999999999999876543 236 Q ss_pred EEEcCCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHH Q lcl|Aclame:pro 144 WWVPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEM 223 (344) Q Consensus 144 y~~~~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~ 223 (344) |.+..+|...+|+++||||+|.+.+.++++|+||+..++.+++.+.+++++..++|+||++|+|||++++ .+++++.++ T Consensus 161 y~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~-~l~~e~~~~ 239 (432) T protein:vir:10 161 YVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVG-DLNEDAKKV 239 (432) T ss_pred EEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCC-CCCHHHHHH Confidence 7777888889999999999998777899999999999999999999999999999999999999999864 689999999 Q ss_pred HHHHHHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHH Q lcl|Aclame:pro 224 LRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIE 302 (344) Q Consensus 224 lk~~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e 302 (344) +++.|++ +.|..|+++++|++ .|++|+|++++++|+||+|++++++++||++|||||++||+. +.++++|+| T Consensus 240 ~~~~~~~~~~g~~n~~~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~--~~~~~s~~e 312 (432) T protein:vir:10 240 FRENFESMSSGLQNSHRIALMP-----VGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDL--SKATLNNIE 312 (432) T ss_pred HHHHHHHHhcccccCCcceecC-----CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC--CCCCcccHH Confidence 9999976 56779999999994 588999999999999999999999999999999999999985 446899999 Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCC-------C Q lcl|Aclame:pro 303 KVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDN-------G 344 (344) Q Consensus 303 ~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~-------~ 344 (344) ++.+.|+++||+|+++.|| +||++|.++..+-..+.++|+- - T Consensus 313 ~~~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~ 362 (432) T protein:vir:10 313 QQQQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADI 362 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCH Confidence 9999999999999999998 7999997654322233333332 2 No 46 >protein:vir:105002 Length: 432 # NCBI annotation: putative phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459967;genbank:gi:85701382;genbank:GeneID:3882143 Probab=100.00 E-value=1.9e-65 Score=375.36 Aligned_cols=326 Identities=16% Similarity=0.186 Sum_probs=252.5 Q ss_pred CCCCCCCCCCCchhhccccccce-------EEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHh-hcchhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKM-------EAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSL-RAAVHH 72 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~-------~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~-~~~~~~ 72 (344) +..+|+...... ..+...+.. ..--.-++..++.+++|++|+.+|++..+ ++|+.+++..... +....| T Consensus 11 ~~~~~r~~~~~~--~~~~~~~~~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia-~lp~~~~~~~~~~~~~~~~~ 87 (432) T protein:vir:10 11 FNFEKRQTSQVI--ELNKDDEKLLEWLGISPSTISVKGKNALKVATVFACIKILSESVS-KLPLKIYQEDEYGIQRGTKH 87 (432) T ss_pred cCccccCccccc--ccCCchHHHHHHhCCCcCccccchhhhhccHHHHHHHHHHHHhhc-cCceEEEEecCCceeecccc Confidence 221221111111 111111100 00001235678999999999999987654 8888875432211 111111 Q ss_pred hhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccC--------ceE Q lcl|Aclame:pro 73 SSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEE--------DVY 143 (344) Q Consensus 73 ~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~--------~~~ 143 (344) . -..++..+||+++++++|++. +.+++++||+|+++.|+..|++++|+|++|..|++..+. ..+ T Consensus 88 ------~-l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~~~ 160 (432) T protein:vir:10 88 ------Y-LNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKMW 160 (432) T ss_pred ------H-HHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceEE Confidence 1 123455689999999998865 568899999999999999999999999999999876543 236 Q ss_pred EEEcCCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHH Q lcl|Aclame:pro 144 WWVPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEM 223 (344) Q Consensus 144 y~~~~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~ 223 (344) |.+..+|...+|+++||||+|.+.+.++++|+||+..++.+++.+.+++++..++|+||++|+|||++++ .+++++.++ T Consensus 161 y~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~-~l~~e~~~~ 239 (432) T protein:vir:10 161 YVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVG-DLNEDAKKV 239 (432) T ss_pred EEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCC-CCCHHHHHH Confidence 7777888889999999999998777899999999999999999999999999999999999999999864 689999999 Q ss_pred HHHHHHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHH Q lcl|Aclame:pro 224 LRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIE 302 (344) Q Consensus 224 lk~~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e 302 (344) +++.|++ +.|..|+++++|++ .|++|+|++++++|+||+|++++++++||++|||||++||+. +.++++|+| T Consensus 240 ~~~~~~~~~~g~~n~~~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~--~~~~~s~~e 312 (432) T protein:vir:10 240 FRENFESMSSGLQNSHRIALMP-----VGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDL--SKATLNNIE 312 (432) T ss_pred HHHHHHHHhcccccCCcceecC-----CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC--CCCCcccHH Confidence 9999976 56779999999994 588999999999999999999999999999999999999985 446899999 Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCC-------C Q lcl|Aclame:pro 303 KVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDN-------G 344 (344) Q Consensus 303 ~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~-------~ 344 (344) ++.+.|+++||+|+++.|| +||++|.++..+-..+.++|+- - T Consensus 313 ~~~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~ 362 (432) T protein:vir:10 313 QQQQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADI 362 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCH Confidence 9999999999999999998 7999997654322233333332 2 No 47 >protein:vir:102855 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338135;genbank:gi:77020228;genbank:GeneID:3703764 Probab=100.00 E-value=1.9e-65 Score=375.36 Aligned_cols=326 Identities=16% Similarity=0.186 Sum_probs=252.5 Q ss_pred CCCCCCCCCCCchhhccccccce-------EEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHh-hcchhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKM-------EAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSL-RAAVHH 72 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~-------~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~-~~~~~~ 72 (344) +..+|+...... ..+...+.. ..--.-++..++.+++|++|+.+|++..+ ++|+.+++..... +....| T Consensus 11 ~~~~~r~~~~~~--~~~~~~~~~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia-~lp~~~~~~~~~~~~~~~~~ 87 (432) T protein:vir:10 11 FNFEKRQTSQVI--ELNKDDEKLLEWLGISPSTISVKGKNALKVATVFACIKILSESVS-KLPLKIYQEDEYGIQRGTKH 87 (432) T ss_pred cCccccCccccc--ccCCchHHHHHHhCCCcCccccchhhhhccHHHHHHHHHHHHhhc-cCceEEEEecCCceeecccc Confidence 221221111111 111111100 00001235678999999999999987654 8888875432211 111111 Q ss_pred hhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccC--------ceE Q lcl|Aclame:pro 73 SSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEE--------DVY 143 (344) Q Consensus 73 ~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~--------~~~ 143 (344) . -..++..+||+++++++|++. +.+++++||+|+++.|+..|++++|+|++|..|++..+. ..+ T Consensus 88 ------~-l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~~~ 160 (432) T protein:vir:10 88 ------Y-LNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKMW 160 (432) T ss_pred ------H-HHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceEE Confidence 1 123455689999999998865 568899999999999999999999999999999876543 236 Q ss_pred EEEcCCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHH Q lcl|Aclame:pro 144 WWVPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEM 223 (344) Q Consensus 144 y~~~~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~ 223 (344) |.+..+|...+|+++||||+|.+.+.++++|+||+..++.+++.+.+++++..++|+||++|+|||++++ .+++++.++ T Consensus 161 y~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~-~l~~e~~~~ 239 (432) T protein:vir:10 161 YVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVG-DLNEDAKKV 239 (432) T ss_pred EEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCC-CCCHHHHHH Confidence 7777888889999999999998777899999999999999999999999999999999999999999864 689999999 Q ss_pred HHHHHHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHH Q lcl|Aclame:pro 224 LRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIE 302 (344) Q Consensus 224 lk~~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e 302 (344) +++.|++ +.|..|+++++|++ .|++|+|++++++|+||+|++++++++||++|||||++||+. +.++++|+| T Consensus 240 ~~~~~~~~~~g~~n~~~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~--~~~~~s~~e 312 (432) T protein:vir:10 240 FRENFESMSSGLQNSHRIALMP-----VGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDL--SKATLNNIE 312 (432) T ss_pred HHHHHHHHhcccccCCcceecC-----CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC--CCCCcccHH Confidence 9999976 56779999999994 588999999999999999999999999999999999999985 446899999 Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCC-------C Q lcl|Aclame:pro 303 KVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDN-------G 344 (344) Q Consensus 303 ~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~-------~ 344 (344) ++.+.|+++||+|+++.|| +||++|.++..+-..+.++|+- - T Consensus 313 ~~~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~ 362 (432) T protein:vir:10 313 QQQQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADI 362 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCH Confidence 9999999999999999998 7999997654322233333332 2 No 48 >protein:vir:1326 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi:9631143;uniprot:Q9ZXB2;genbank:GeneID:2715872 Probab=100.00 E-value=1.2e-65 Score=376.41 Aligned_cols=328 Identities=18% Similarity=0.213 Sum_probs=243.3 Q ss_pred CCC-----CCCCCCC-Cchhh-c-cccccceE---EEEcC----CccccccchhHHHHhhhhhcCcceeccccHHHHHHH Q lcl|Aclame:pro 1 MSK-----KKGKTLQ-PAAKK-M-TASAPKME---AFTFG----EPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKS 65 (344) Q Consensus 1 msk-----~~~~~~~-~~~~~-~-~~~~~~~~---~~~~~----~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~ 65 (344) |.. ++.+..+ ..... . +...+... ..+.+ +++.+|.+++|++||.+|+++.+ ++|+.+++.... T Consensus 1 Mg~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~V~~~~al~~~~V~~~v~~Ia~~iA-~lp~~~~~~~~~ 79 (457) T protein:vir:13 1 MGFWSALFGRGHSPALDGIEARAWEPYDPSIYNLGAVAASGETVTPHDALQVSAVFASVRLLSETIA-TLPLSTYSKRGG 79 (457) T ss_pred CchhhhhhcccccccccccccccccccchHHHhhcccccCCceechHHhhccHHHHHHHHHHHHhhc-cCceEEEEecCC Confidence 652 1111111 11110 0 00011110 00111 35678999999999999987754 788887653211 Q ss_pred hhcchhhhhhhhhhhhhHHHhcccCCCCCHHHHH-HHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc--- Q lcl|Aclame:pro 66 LRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFS-RFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--- 141 (344) Q Consensus 66 ~~~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~-~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~--- 141 (344) .+ ..+....-..++..+|| ++++.+|+ .++.+++++||+|++|.+++ |+|++|+|++|..|++..+.. T Consensus 80 ~~------~~~~~~~l~~~ln~~~n-~~t~~~f~~~~~~~lll~Gna~~~i~~~~-g~~~~l~~l~p~~v~v~~~~~~~~ 151 (457) T protein:vir:13 80 SR------KEIVTPEWLDYPNAEPG-GMGRIDILSQTVLSLLLQGNAFLAVRWQG-PNIVGLDVLDPTKIHVHMVMVDGL 151 (457) T ss_pred cc------cccccchHHHhccccCC-CCCHHHHHHHHHHHHhhcCCeEEEEEecC-CcEEEEEEEccCceEEEEecCCCc Confidence 11 11111112223344455 56666665 56678999999999998875 999999999999998754322 Q ss_pred ---e--EEEEcCCceE---EEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCC Q lcl|Aclame:pro 142 ---V--YWWVPSFNEP---TAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTD 213 (344) Q Consensus 142 ---~--~y~~~~~~~~---~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~ 213 (344) . .|.+..++.. ..|+++||||+|.+++.++++|+||+..++.+|+++.++++|+.++|+||++|+|||++++ T Consensus 152 ~~~~~~~y~~~~~~~~~~~~~~~~~diih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~ 231 (457) T protein:vir:13 152 RRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGSKFFANGAMPGAVVEVPG 231 (457) T ss_pred cceeEEEEEEecCCceeeEEeeCccceEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcCC Confidence 1 2444444432 4688999999999988777999999999999999999999999999999999999999875 Q ss_pred CCCCHHHHHHHHHHHHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhcccc Q lcl|Aclame:pro 214 AVQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKP 292 (344) Q Consensus 214 ~~l~~e~~~~lk~~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~ 292 (344) .+++|+++++++.|++ +.|.+|+++++||+ .|++|+|++++++|+||+|++++++++||++|||||++||+.+ T Consensus 232 -~ls~e~~~~~~~~~~~~~~g~~nag~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~ 305 (457) T protein:vir:13 232 -TMSEEGLARAREAWRAANSGVDNAHRVALLT-----EGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDAT 305 (457) T ss_pred -CCCHHHHHHHHHHHHHHhcCccccCcceecC-----CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCC Confidence 6899999999999976 56789999999994 5889999999999999999999999999999999999999987 Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCC-------CC Q lcl|Aclame:pro 293 ENVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTD-------NG 344 (344) Q Consensus 293 ~~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~-------~~ 344 (344) +++.+++|+|++.+.|+++||.||+++|| +||++|..+..+ +.|.++|+ |- T Consensus 306 ~~~~~~sn~eq~~~~f~~~tl~P~~~~ie~~ln~~L~~~~~~-~~~~i~fd~~~l~~~D~ 364 (457) T protein:vir:13 306 NSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETAD-RFRFVKFNLDEIKRGAP 364 (457) T ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc-CceeEEeechhhhccCH Confidence 77777899999999999999999999999 699999776432 22222222 21 No 49 >protein:vir:80333 Length: 419 # NCBI annotation: gp4, phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111083;genbank:gi:134288632;genbank:GeneID:4960580 Probab=100.00 E-value=2.1e-65 Score=375.22 Aligned_cols=324 Identities=17% Similarity=0.194 Sum_probs=251.0 Q ss_pred CCCC--CCCCCCCchhhcccc------ccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhh-cchh Q lcl|Aclame:pro 1 MSKK--KGKTLQPAAKKMTAS------APKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLR-AAVH 71 (344) Q Consensus 1 msk~--~~~~~~~~~~~~~~~------~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~-~~~~ 71 (344) |--+ +++...+.......- ...+.+-..-++..+|.+++|++||.+|+++.+ ++|+.+++.....+ .... T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~v~~~~al~~~~v~~cv~~ia~~ia-~lp~~~~~~~~~~~~~~~~ 79 (419) T protein:vir:80 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIA-QLPVELYERSGDDRKPATD 79 (419) T ss_pred CCcccccccccCcCCCCcchhhHHhhcccccccCcccChHHhhccHHHHHHHHHHHHhhc-cCceEEEEecCCCcccccc Confidence 7644 333332221111000 001111112256789999999999999987755 88988765432111 1111 Q ss_pred hhhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCce--EEEEcC Q lcl|Aclame:pro 72 HSSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV--YWWVPS 148 (344) Q Consensus 72 ~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~--~y~~~~ 148 (344) | .-..++..+||+++++.+|++. +.+++++||||++++|+..|+|++|+|++|..|++..+.+. +|++. T Consensus 80 ~-------~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~i~~~~v~i~~~~~~~~~y~~~- 151 (419) T protein:vir:80 80 H-------PLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVA- 151 (419) T ss_pred c-------HHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEECCCceEEEEEc- Confidence 1 1234566789999999999875 45889999999999999999999999999999998876654 34433 Q ss_pred CceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCC---CCCCHHHHHHHH Q lcl|Aclame:pro 149 FNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTD---AVQDRNDIEMLR 225 (344) Q Consensus 149 ~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~---~~l~~e~~~~lk 225 (344) +. ..+++++|+|+|.++ .++++|+||+..++.+++++.++++|..++|+||++|+|+|++++ +..++++.++++ T Consensus 152 -~~-~~~~~~~i~h~~~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~~ 228 (419) T protein:vir:80 152 -GA-DPLPQRLVHHVRWMS-INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRIT 228 (419) T ss_pred -Cc-cccchhheEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCHHHHHHHH Confidence 22 248899999999875 578999999999999999999999999999999999999999764 345789999999 Q ss_pred HHHHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHH Q lcl|Aclame:pro 226 ENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKV 304 (344) Q Consensus 226 ~~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~ 304 (344) +.|++ +.|..|++++++| +.|++|+|++.+++|+||+|++++++++||++|||||++||+. +.++++|+|++ T Consensus 229 ~~~~~~~~g~~n~g~~~vl-----~~g~~~~~l~~s~~d~q~~e~~~~~~~~Ia~~fgVPp~llg~~--~~~t~~n~e~~ 301 (419) T protein:vir:80 229 DGWNAKFGGSGNAKKVALL-----QEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNEL--ERATFSNIEHQ 301 (419) T ss_pred HHHHHHhcCccccCCceec-----CCCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCC--CCCCcccHHHH Confidence 99975 6777899999999 4588999999999999999999999999999999999999975 44789999999 Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 305 AKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 305 ~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) .+.|+++||.|+++.|| +||++|..+..+ ..|.++||-. T Consensus 302 ~~~f~~~~l~P~~~~ie~~l~~kll~~~~~-~~~~i~fd~~ 341 (419) T protein:vir:80 302 SLQFVIYTLLPWVKRHEQAKTRDLLLPSER-KQYFIEYNLA 341 (419) T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCcccc-CCeEEEEech Confidence 99999999999999998 799999765433 2344444322 No 50 >protein:vir:1431 Length: 419 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536360;genbank:gi:17975165;genbank:GeneID:929165 Probab=100.00 E-value=2.3e-65 Score=374.94 Aligned_cols=325 Identities=16% Similarity=0.180 Sum_probs=249.1 Q ss_pred CCCCCCCCCCCchhhccccc--------cceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASA--------PKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHH 72 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~--------~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~ 72 (344) |==+|+..+.......+... +.+.+-..-+++.+|.+++|++||.+|+++.+ ++|+.+++.....+ T Consensus 1 ~~~~r~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~vt~~~al~~~~v~~~v~~ia~~iA-~lp~~~~~~~~~~~----- 74 (419) T protein:vir:14 1 MFFSRQLLSNLGQTQMSAGGWVSALLGSSRSDSGQVVTPASALALTVLQNCVTLLAESIA-QLPIELYERSGEDR----- 74 (419) T ss_pred CcccccccccccccccCcchhhHHhhcCCCccCCcccchHHhhccHHHHHHHHHHHHhhc-cCceEEEEecCCcc----- Confidence 53333221111111111111 11111112346789999999999999988765 88888765332111 Q ss_pred hhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCce--EEEEcCC Q lcl|Aclame:pro 73 SSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV--YWWVPSF 149 (344) Q Consensus 73 ~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~--~y~~~~~ 149 (344) ..+..+. -..++..+||+++++++|++. +.+++++||+|++|.|+..|+|++|+|++|..|++..+.+. +|.+... T Consensus 75 ~~~~~~~-l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~l~pl~~~~v~v~~~~~~~~~y~~~~~ 153 (419) T protein:vir:14 75 KPATDHP-LYSILKYEPNSWQTPFEYQEQSQVAVGLRGNSYSFIDRDSDGVIQGLYPLDNEAVTVMRGSDLKPVYRVRGS 153 (419) T ss_pred ccccccH-HHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEECCCceEEEEEccC Confidence 1111111 123456689999999999875 56889999999999999999999999999999998765543 4444332 Q ss_pred ceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCC---CCCCHHHHHHHHH Q lcl|Aclame:pro 150 NEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTD---AVQDRNDIEMLRE 226 (344) Q Consensus 150 ~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~---~~l~~e~~~~lk~ 226 (344) . .+++++|+|+|.++ .++++|+||+..++++++++.+++++..++|+||++|+|+|++++ +.+++++.+++++ T Consensus 154 ~---~~~~~~i~h~~~~~-~dg~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~~~~~ 229 (419) T protein:vir:14 154 D---PMPQRLVHHVRWMS-INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPKDAPALKDQASVDRITD 229 (419) T ss_pred c---ccchhheeEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEecCCCCcccCHHHHHHHHH Confidence 2 47889999999876 578999999999999999999999999999999999999999874 3347899999999 Q ss_pred HHHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHH Q lcl|Aclame:pro 227 NMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVA 305 (344) Q Consensus 227 ~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~ 305 (344) .|++ +.|.+|+++++++ +.|++|+|++++++|+||+|++++++++||++|||||++||+. +.++++|+|++. T Consensus 230 ~~~~~~~g~~nag~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVpp~~lg~~--~~~t~s~~E~~~ 302 (419) T protein:vir:14 230 GWNAKFGGSGNAKKVALL-----QEGMTFRPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNEL--ERATFSNIEHQS 302 (419) T ss_pred HHHHHhcCccccCCceec-----CCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCC--CCCCcccHHHHH Confidence 9965 6778999999999 4588999999999999999999999999999999999999975 447899999999 Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 306 KVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 306 ~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) +.|+++||.|++++|| +||++|.++..+ ..|.++||-- T Consensus 303 ~~f~~~~L~P~~~~ie~~l~~kll~~~~~-~~~~i~fd~~ 341 (419) T protein:vir:14 303 LQFVIYTLLPWVKRHEQAKTRDLLLPSER-KQYFIEYNLA 341 (419) T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCcccc-CCeEEEEech Confidence 9999999999999998 799999776543 3444444322 No 51 >protein:vir:8317 Length: 409 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817885;genbank:gi:29566318;genbank:GeneID:1259513 Probab=100.00 E-value=3.4e-65 Score=374.03 Aligned_cols=319 Identities=14% Similarity=0.115 Sum_probs=239.4 Q ss_pred CCCCCCCCCCCchhhccccccc-----eEEEEc-----CCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcch Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPK-----MEAFTF-----GEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAV 70 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~-----~~~~~~-----~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 70 (344) |.+-+++..+....+.....+. ...+.. -.++.++.+++||+||.+|++..+ ++|+.+++-.+ ... T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~t~~~~~~~~~v~acV~~Ia~~iA-~lpl~~~~~~~---~~~ 107 (409) T protein:vir:83 32 MVEFRGPEEEPEARALPWIRPTAWSGYPESWATPSWGSAQDKLRTLIDVAWACIDLNASVLS-SMPIYRMRNGR---IID 107 (409) T ss_pred eeeccCCCcchhhhhcccccccccccccccccccCccccchhhHhhhHHHHHHHHHHHHhhc-cCceEEeeCCc---ccc Confidence 4444444333332222111100 011111 124567888999999999987654 88887764221 111 Q ss_pred hhhhhhhhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEE-EECCCCceEEEEEecCcceeccccCce--EEEEc Q lcl|Aclame:pro 71 HHSSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEK-RYSTTGKVIRLETSPAKYTRRGVEEDV--YWWVP 147 (344) Q Consensus 71 ~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i-~r~~~G~~~~L~pl~~~~v~~~~~~~~--~y~~~ 147 (344) . ...++..+||++||+.+|++.++..|+.||+|+++ .|+.+|+|++|+||+|..|++..+.+. +|++. T Consensus 108 ~---------~~~ll~~~PN~~~t~~~f~~~l~~~lllGnay~~~i~r~~~G~~~~L~pl~p~~v~v~~~~~g~~~y~~~ 178 (409) T protein:vir:83 108 S---------VAWMSNPDPEVYTSWQEFAKQLFWDFQLGEAFVLPMAHGSDGYPIRFRVVPPWLVNVELKKGARREYRIG 178 (409) T ss_pred c---------hhhhcccCCCCCCCHHHHHHHHHHHHhhCCcEEEEEEECCCCcEEEEEEECCcceEEEEcCCceEEEEEc Confidence 1 11245568999999999987665434449999985 589999999999999999987665543 45543 Q ss_pred CCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 148 SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLREN 227 (344) Q Consensus 148 ~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~ 227 (344) . .+.++||||+|.+++.++++|+||+..++.++.++.++++|+.++|+||++|+|||++++ .+++|+++++++. T Consensus 179 ~-----~~~~~eiiHir~~~~~~~~~G~spi~~~~~~i~~~~a~~~~~~~~f~nga~p~gil~~~~-~ls~e~~~~~~~~ 252 (409) T protein:vir:83 179 G-----LNVTDEILHIRYQGNTADAHGHGPLESAAPRQVVIGLLQKYVQNLAETGGVPLYWLGVER-RLSETEAVDLMDR 252 (409) T ss_pred c-----ccCccceEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEeecCC-CCCHHHHHHHHHH Confidence 2 234689999999888889999999999999999999999999999999999999999764 6999999999999 Q ss_pred HHHhhccccccccccccCCCcccccee-eecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccc-cccccccHHHHH Q lcl|Aclame:pro 228 MVKSKGRNNFKNLFLYAPQGKADGIKI-IPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPE-NVGSLGDIEKVA 305 (344) Q Consensus 228 ~~~~~g~~n~~~~~vl~~~~~~~gl~~-~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~-~~~~~~n~e~~~ 305 (344) |++.. .+|+|+++++.+ |+++ ++++++++|+||+|++++++++||++|||||++||+..+ ++.+|+|+|++. T Consensus 253 ~~~~~-~~nag~~~il~~-----g~~~~~~~~~s~~d~q~le~r~~~~~eIa~~fgVPp~llg~~~~~~~~tysn~eq~~ 326 (409) T protein:vir:83 253 WIESR-SKYAGHPALVTG-----GATLNQAKSMSAQDLSLMELTQFNEARIAILLGVPPFLVGLPGATGSLTYSNIEQLF 326 (409) T ss_pred HHHhh-CCccCccceecC-----CcccccccCCCHHHHHHHHHHHhhHHHHHHHhCCCHHHccCCCCccccccccHHHHH Confidence 97654 358899988854 5555 689999999999999999999999999999999998654 445799999999 Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhCCc--ceeccccccCCCCC Q lcl|Aclame:pro 306 KVFVRNELIPLQDRIR-EINGWLGQE--VIRFKNYSLDTDNG 344 (344) Q Consensus 306 ~~f~~~~l~P~~~~ie-eln~~L~~~--~~~f~~y~l~~~~~ 344 (344) +.|+++||.||+++|| +||++|.++ .++|+.-.|.-.|= T Consensus 327 ~~f~~~tL~P~~~~ie~~l~~~Ll~~~~~~~f~~~~llr~d~ 368 (409) T protein:vir:83 327 SFHDRSSLRPKATAVMAALDRWALPSPQHLELNRDDYTRPSL 368 (409) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEeehhhhhccCH Confidence 9999999999999999 799999654 33443322222111 No 52 >protein:vir:1266 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690758;genbank:gi:22854998;genbank:GeneID:955213 Probab=100.00 E-value=2.1e-64 Score=369.65 Aligned_cols=322 Identities=17% Similarity=0.171 Sum_probs=249.9 Q ss_pred CCCCCCCCCCCchhhccccccceEEE--------EcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAF--------TFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHH 72 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~--------~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~ 72 (344) |-+||........ .........| ..-++..+|.+++|++||.+|+++.+ ++|+.+++..+..+ T Consensus 6 ~f~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~Ia~~ia-~l~~~~~~~~~~~~----- 76 (416) T protein:vir:12 6 MFEKRSGSSDHED---GFNNILLNMFGGRKTASGERVSESNSLVQPDIFACVNVLSDDIA-KLPIHTYKRTDGGI----- 76 (416) T ss_pred hcccccCccccCc---cchhHHHHhhcCcccccCceechhhhhccHHHHHHHHHHHHhhh-hCceEEEEecCCcc----- Confidence 3334433221111 0000001111 11235678999999999999987755 78887654322110 Q ss_pred hhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceecccc---CceEEEEcC Q lcl|Aclame:pro 73 SSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVE---EDVYWWVPS 148 (344) Q Consensus 73 ~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~---~~~~y~~~~ 148 (344) .....+. -..++..+||++++++.|++. +.+++++||||++|.|+..|+|.+|+|++|.+|++..+ +..||.+.. T Consensus 77 ~~~~~~~-l~~~l~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~~~~~~ 155 (416) T protein:vir:12 77 ERKPEHK-SAHAVYARPNPYMTAFTWKKLMMTHVLTWGNAYSYIQFGSHGYPEALFPLRPDYTNAYVHPTTGMLWYQTVL 155 (416) T ss_pred ccccccH-HHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEeCCCcEEEEEEec Confidence 0001111 123456789999999999765 56889999999999999999999999999999987643 334777788 Q ss_pred CceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 149 FNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENM 228 (344) Q Consensus 149 ~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~ 228 (344) +|..++++++||||+|.++ .++++|+||+.+++.++.++.++++|..++|+||++|+|||++++ .+++|+++++++.| T Consensus 156 ~g~~~~~~~~eiih~~~~~-~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~-~~~~e~~~~~~~~~ 233 (416) T protein:vir:12 156 NGKAIELYDYEVLHFKGLS-TDGIHGKSPIGVVREHIGAQAAATKYNAKLYKNEATPRGILKVPA-FLDEKPKENVRKEW 233 (416) T ss_pred CCeEEEecCccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEecCC-CCCHHHHHHHHHHH Confidence 8888999999999999886 468999999999999999999999999999999999999999864 68999999999999 Q ss_pred HHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHH Q lcl|Aclame:pro 229 VKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVF 308 (344) Q Consensus 229 ~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f 308 (344) +... |+++++++ ++|++|+|++++++|+||+|++++++++||++|||||++||+. +.++++|+|++.+.| T Consensus 234 ~~~~---~~~~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~--~~~t~sn~e~~~~~f 303 (416) T protein:vir:12 234 KRVN---KVENIAII-----DYGLEYQSISMPLQEAQFVESMKFNKAQISMIYKVPLHKLNEL--DKATFSNIEHQSIEY 303 (416) T ss_pred HHHh---cCCCeeec-----CCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCc--cCCCcccHHHHHHHH Confidence 7654 56788988 4688999999999999999999999999999999999999975 447899999999999 Q ss_pred HHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 309 VRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 309 ~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) +++||.|+++.|| +||++|.++..+-..|.++|+-. T Consensus 304 ~~~~l~P~~~~ie~~l~~~l~~~~~~~~g~~i~fd~~ 340 (416) T protein:vir:12 304 VRNTLQPWIVNFEQELNVKLFLDHDQKSGHYVKFNID 340 (416) T ss_pred HHHHHHHHHHHHHHHHHHhhcCchhhcCCceEEeech Confidence 9999999999998 79999986543323343444321 No 53 >protein:vir:483 Length: 413 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543090;swissprot:trembl:q8w629;genbank:gi:18249902;uniprot:Q8W629;genbank:GeneID:929685 Probab=100.00 E-value=2.8e-64 Score=368.99 Aligned_cols=326 Identities=15% Similarity=0.214 Sum_probs=249.7 Q ss_pred CCCCCCCCCCCchhh-ccccccceEEEEcC----CccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKK-MTASAPKMEAFTFG----EPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSP 75 (344) Q Consensus 1 msk~~~~~~~~~~~~-~~~~~~~~~~~~~~----~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~ 75 (344) +.-.|++..++.... .....-.....++. +++.+|.+++|++||.+|+++.+ +.|+.+++.....+. .+ T Consensus 4 ~~~f~r~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~l~~~~v~~~i~~Ia~~iA-~~p~~~~~~~~~~~~-----~~ 77 (413) T protein:vir:48 4 SGLFQRKSDAPVTTPAELAEAIGLSYDTYTGKRISSQRAMRLTAVYSCVRVLAESVG-MLPCSLYKISGTLKT-----RV 77 (413) T ss_pred chhhccCccCCccchHHHHHhhhcCcccccCceechhhhhccHHHHHHHHHHHHhhh-hCceEEEEecCCcce-----ee Confidence 222222222222111 01000001111111 35678999999999999987654 788877553321111 11 Q ss_pred hhhhhhhHHHhcccCCCCCHHHHHHHH-HHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCce--EEE-EcCCce Q lcl|Aclame:pro 76 IYVKRNILASTFIPHPWLSQQDFSRFV-LDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV--YWW-VPSFNE 151 (344) Q Consensus 76 i~~~~~~~~~~~~pn~~~~~~~f~~~~-~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~--~y~-~~~~~~ 151 (344) ..+. -..++..+||++++++.|++.+ .+++++||+|++++|+ .|+|++|+|+++.+|++..+.+. +|. ...+|. T Consensus 78 ~~~~-~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~-~g~~~~L~~l~~~~v~~~~~~~~~~~y~~~~~~g~ 155 (413) T protein:vir:48 78 VDER-LHKLVSAKPNGYMTPQEFWELVIVCLCLRGNFYAYKVKA-LGEVVELLPIDPGCVEPKLNSQWQPVYQVTFPDGS 155 (413) T ss_pred cccH-HHHHHHhhccCCCCHHHHHHHHHHHHhhcCceEEEEEeC-CCcEEEEEEEcCceEEEEEcCCceEEEEEEecCce Confidence 1111 1234567899999999998755 5889999999999998 49999999999999998766543 333 345677 Q ss_pred EEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHH- Q lcl|Aclame:pro 152 PTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVK- 230 (344) Q Consensus 152 ~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~- 230 (344) ..+|+++||||+|.++ .++++|+||+..++.+++++.++++|+.++|+||++|+|||++++ .+++|+.+++++.|++ T Consensus 156 ~~~~~~~evih~~~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~-~~~~e~~~~~~~~~~~~ 233 (413) T protein:vir:48 156 VDVLTQDEIWHVRTLT-LDGLVGLNPIAYAREAISLAAATEEHGARLFGNGAVTSGVLRTEQ-KLTPDAYERLKKDFEER 233 (413) T ss_pred EEEEccccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCC-CCCHHHHHHHHHHHHHH Confidence 7889999999999886 478999999999999999999999999999999999999999875 6899999999999976 Q ss_pred hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHH Q lcl|Aclame:pro 231 SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVR 310 (344) Q Consensus 231 ~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~ 310 (344) +.|.+|+++++++ +.|++|+|++.+++|+||+|++++++++||++|||||++||+. +.++++|+|++.+.|++ T Consensus 234 ~~g~~n~g~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~--~~~t~~n~e~~~~~f~~ 306 (413) T protein:vir:48 234 HTGLGNAHRPMIL-----EMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNT--DRATFNNIEELGLGFIN 306 (413) T ss_pred hcCccccCcceec-----CCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC--cCCCcccHHHHHHHHHH Confidence 5677999999999 4688999999999999999999999999999999999999985 44789999999999999 Q ss_pred HHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 311 NELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 311 ~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) +||+|++++|| +||++|.++..+ ..|.++||-- T Consensus 307 ~~i~P~~~~ie~~l~~~L~~~~~~-~~~~~~fd~~ 340 (413) T protein:vir:48 307 YSLVPYLTRIEQRINTGLVRESKQ-GKFYAKFNAG 340 (413) T ss_pred HHHHHHHHHHHHHHHhhccCcccc-CCeEEEEech Confidence 99999999998 799999765433 2333333211 No 54 >protein:vir:9702 Length: 406 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795464;genbank:gi:28876227;genbank:GeneID:1257772 Probab=100.00 E-value=2e-64 Score=369.81 Aligned_cols=319 Identities=14% Similarity=0.084 Sum_probs=247.1 Q ss_pred CCCCCCCCCCCchhhcc----ccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMT----ASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPI 76 (344) Q Consensus 1 msk~~~~~~~~~~~~~~----~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i 76 (344) ||==+++.....+.... ...... .-....++|.+++||+||.+|+++.+ ++|+..++.. +. ... T Consensus 1 m~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Al~~~~V~~~i~~Ia~~iA-~lp~~~~~~~------g~--~~~ 68 (406) T protein:vir:97 1 MSFFQPLGTSKVSYDDYISSVLAGDVS---QKYLGVSALKNSDILTATSIIAGDIA-RFPLVKKDVN------GD--IIH 68 (406) T ss_pred CccccccCCCCCCcchHHHHHhcCCCC---cccccchhhccHHHHHHHHHHHHhhh-hCeeEEEecC------cc--ccc Confidence 77555444333221110 000000 01123468999999999999987755 6777543221 11 001 Q ss_pred hhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECC-CCceEEEEEecCcceecccc--CceEEEEc--CCc Q lcl|Aclame:pro 77 YVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYST-TGKVIRLETSPAKYTRRGVE--EDVYWWVP--SFN 150 (344) Q Consensus 77 ~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~-~G~~~~L~pl~~~~v~~~~~--~~~~y~~~--~~~ 150 (344) .+ .-..++..+||+++++++|++. +.+++++||+|+++.|++ .|++++|+|++|..|++..+ +..+|.+. .++ T Consensus 69 ~~-~~~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gnay~~i~r~~~~g~~~~L~~i~p~~v~v~~~~~~~~~y~~~~~~~~ 147 (406) T protein:vir:97 69 DE-DINYLLNVKSTSNASARTWKFAMAVNAILTGNSFSRILRDPKTNQALQFQFYRPSETTVEETDNHEIVYTFTDMLTA 147 (406) T ss_pred cc-hHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCCeEEEEEEECCCeeEEEEcCCceEEEEEEecCCc Confidence 11 1234566789999999999874 568899999999999985 68999999999999987654 33455553 567 Q ss_pred eEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 151 EPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVK 230 (344) Q Consensus 151 ~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~ 230 (344) ....++++||||+|.++ .++++|+||+.++++++.++.++++|..++|+||+.|++++. +++.+++++++++++.|++ T Consensus 148 ~~~~~~~~evih~r~~~-~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~~i~~-~~~~l~~e~~~~~~~~~~~ 225 (406) T protein:vir:97 148 KQVKCFAHDVIHWKFFS-HDTILGRSPLLSLGDEIDLQTGGINTLIKFFKDGFSSGILTM-KGAQLSGDARQRARQEFEK 225 (406) T ss_pred eEEEEccccEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEe-cCCCCCHHHHHHHHHHHHH Confidence 78899999999999775 688999999999999999999999999999999999887765 5678999999999999998 Q ss_pred hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHH Q lcl|Aclame:pro 231 SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVR 310 (344) Q Consensus 231 ~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~ 310 (344) ..+++|+|+++|| +.|++|+|++++++|+||+|++++++++||++|||||++||+ .++++|++++.+.|++ T Consensus 226 ~~~g~n~g~~~vl-----~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~----~~~~~~~e~~~~~f~~ 296 (406) T protein:vir:97 226 MREGSVGGSPLVF-----DSTMEYTPLEIDTNVLQLITSNNFSTAQIAKALRVPSYKLGV----NSPNQSVAQLMEDYVT 296 (406) T ss_pred HhcccccCceeec-----CCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHcCC----CCCcchHHHHHHHHHH Confidence 8777899999999 468899999999999999999999999999999999999985 2457899999999999 Q ss_pred HHHHHHHHHHH-HHHHhhCCcceeccccccCCC--CC Q lcl|Aclame:pro 311 NELIPLQDRIR-EINGWLGQEVIRFKNYSLDTD--NG 344 (344) Q Consensus 311 ~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~--~~ 344 (344) +||.||++.|| ++|++|.....+ ..|.++|+ .- T Consensus 297 ~~l~P~~~~ie~~l~~kll~~~~~-~~~~i~fd~~~~ 332 (406) T protein:vir:97 297 NDLPFYFDAITSELGLKTLNDKDR-RLYHIEFDTRSV 332 (406) T ss_pred HHHHHHHHHHHHHHhhhhcChhhc-cceeEEEecCcc Confidence 99999999998 799999765432 12323332 11 No 55 >protein:vir:4598 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058443;genbank:gi:9635169;genbank:GeneID:1262702 Probab=100.00 E-value=3.3e-64 Score=368.60 Aligned_cols=319 Identities=15% Similarity=0.173 Sum_probs=239.2 Q ss_pred CCCCCCCCCCCchhh-----ccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKK-----MTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSP 75 (344) Q Consensus 1 msk~~~~~~~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~ 75 (344) -.|+++|..+..... .+...........-.+..+|.+++||+||.+|+++.+ ++|+.+++-.+ ....| T Consensus 4 f~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~cv~~Ia~~iA-~~p~~~~~~~~---~~~~~--- 76 (416) T protein:vir:45 4 FYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLA-RMPIRVTVNGQ---INYSD--- 76 (416) T ss_pred ccccccccccCCCcchhHHHHHhccccccCccccchhhhhcchHHHHHHHHHHHhhc-cCceEEecCcc---ccccc--- Confidence 234433322221110 0000001111122235678999999999999987654 78877653111 11111 Q ss_pred hhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc--eEEEEc----- Q lcl|Aclame:pro 76 IYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--VYWWVP----- 147 (344) Q Consensus 76 i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~--~~y~~~----- 147 (344) . -..++..+||++|++++|++. +.+++++||||++|+|+..|+|++|+|++|+.|++..+.. .+|.+. T Consensus 77 ---~-~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~~~ 152 (416) T protein:vir:45 77 ---R-IVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRIDSN 152 (416) T ss_pred ---h-HHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEEEEEEecCC Confidence 1 123456789999999999875 4588899999999999999999999999999998876543 233221 Q ss_pred CCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 148 SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLREN 227 (344) Q Consensus 148 ~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~ 227 (344) +.+....|+++||||+|.++ .++++|+||+..++++++++.++++|+.++|+||++|+|||++++...++++++++++. T Consensus 153 ~~~~~~~~~~~evihir~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~ 231 (416) T protein:vir:45 153 GNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREE 231 (416) T ss_pred CceeEEEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHHHHH Confidence 22345789999999999775 57899999999999999999999999999999999999999998776788999999999 Q ss_pred HHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHH Q lcl|Aclame:pro 228 MVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAK 306 (344) Q Consensus 228 ~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~ 306 (344) |++ +.|..|+++++|| +.|++|+|++++++|+||+|++++++++||++|||||+++|+.. ++ ++.+++.. T Consensus 232 ~~~~~~g~~nag~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~---~~-~~~~~~~~ 302 (416) T protein:vir:45 232 FHKSFSGTKQAGKVVVL-----DESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIET---AN-MSITDANL 302 (416) T ss_pred HHHHhcCccccCceeec-----CCCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCC---CC-ccHHHHHH Confidence 976 5677999999999 46889999999999999999999999999999999999999632 22 35677766 Q ss_pred HHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 307 VFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 307 ~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) .| .+||+|+++.|| ++|++|.++. ..++++|+-. T Consensus 303 ~~-~~~l~P~~~~ie~~ln~~l~~~~---~~~~~~f~~~ 337 (416) T protein:vir:45 303 DY-LSTLKPYITCVCAELNFKFNDEY---VNREFKFDTT 337 (416) T ss_pred HH-HHHHHHHHHHHHHHHhhhccccc---cCceEEEech Confidence 55 569999999998 7999997643 2233333222 No 56 >protein:vir:81095 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429872;genbank:gi:156603925;genbank:GeneID:5525315 Probab=100.00 E-value=3.3e-64 Score=368.60 Aligned_cols=319 Identities=15% Similarity=0.173 Sum_probs=239.2 Q ss_pred CCCCCCCCCCCchhh-----ccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKK-----MTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSP 75 (344) Q Consensus 1 msk~~~~~~~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~ 75 (344) -.|+++|..+..... .+...........-.+..+|.+++||+||.+|+++.+ ++|+.+++-.+ ....| T Consensus 4 f~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~cv~~Ia~~iA-~~p~~~~~~~~---~~~~~--- 76 (416) T protein:vir:81 4 FYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLA-RMPIRVTVNGQ---INYSD--- 76 (416) T ss_pred ccccccccccCCCcchhHHHHHhccccccCccccchhhhhcchHHHHHHHHHHHhhc-cCceEEecCcc---ccccc--- Confidence 234433322221110 0000001111122235678999999999999987654 78877653111 11111 Q ss_pred hhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc--eEEEEc----- Q lcl|Aclame:pro 76 IYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--VYWWVP----- 147 (344) Q Consensus 76 i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~--~~y~~~----- 147 (344) . -..++..+||++|++++|++. +.+++++||||++|+|+..|+|++|+|++|+.|++..+.. .+|.+. T Consensus 77 ---~-~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~~~ 152 (416) T protein:vir:81 77 ---R-IVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRIDSN 152 (416) T ss_pred ---h-HHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEEEEEEecCC Confidence 1 123456789999999999875 4588899999999999999999999999999998876543 233221 Q ss_pred CCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 148 SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLREN 227 (344) Q Consensus 148 ~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~ 227 (344) +.+....|+++||||+|.++ .++++|+||+..++++++++.++++|+.++|+||++|+|||++++...++++++++++. T Consensus 153 ~~~~~~~~~~~evihir~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~ 231 (416) T protein:vir:81 153 GNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREE 231 (416) T ss_pred CceeEEEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHHHHH Confidence 22345789999999999775 57899999999999999999999999999999999999999998776788999999999 Q ss_pred HHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHH Q lcl|Aclame:pro 228 MVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAK 306 (344) Q Consensus 228 ~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~ 306 (344) |++ +.|..|+++++|| +.|++|+|++++++|+||+|++++++++||++|||||+++|+.. ++ ++.+++.. T Consensus 232 ~~~~~~g~~nag~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~---~~-~~~~~~~~ 302 (416) T protein:vir:81 232 FHKSFSGTKQAGKVVVL-----DESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIET---AN-MSITDANL 302 (416) T ss_pred HHHHhcCccccCceeec-----CCCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCC---CC-ccHHHHHH Confidence 976 5677999999999 46889999999999999999999999999999999999999632 22 35677766 Q ss_pred HHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 307 VFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 307 ~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) .| .+||+|+++.|| ++|++|.++. ..++++|+-. T Consensus 303 ~~-~~~l~P~~~~ie~~ln~~l~~~~---~~~~~~f~~~ 337 (416) T protein:vir:81 303 DY-LSTLKPYITCVCAELNFKFNDEY---VNREFKFDTT 337 (416) T ss_pred HH-HHHHHHHHHHHHHHHhhhccccc---cCceEEEech Confidence 55 569999999998 7999997643 2233333222 No 57 >protein:vir:93943 Length: 409 # NCBI annotation: ORF010 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239936;genbank:gi:66395598;genbank:GeneID:5131009 Probab=100.00 E-value=2.8e-64 Score=369.00 Aligned_cols=320 Identities=14% Similarity=0.152 Sum_probs=247.3 Q ss_pred CCCCCCCCCCCchh-h--ccccccceEEE------Ec--CCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcc Q lcl|Aclame:pro 1 MSKKKGKTLQPAAK-K--MTASAPKMEAF------TF--GEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAA 69 (344) Q Consensus 1 msk~~~~~~~~~~~-~--~~~~~~~~~~~------~~--~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~ 69 (344) |+|-+...+--..- . ...+......+ ++ .++..++.+++|++||.+|+++.+ ++|+.+++-.+ .. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~V~~ci~~Ia~~ia-~lp~~~~~~~~---~~ 76 (409) T protein:vir:93 1 MAKENIVTRIKKKLIDNWIDQSTSKLYDFSPWKNRSFWGVINNTLETNETIFSAITKLSNSMA-SLPLKMYEDYK---VV 76 (409) T ss_pred CCccchhhhhhhhhhhhhhccccccccccccccCccccccchhhhhccHHHHHHHHHHHHhhh-hCceeEeeccc---cc Confidence 98876544322211 0 01111111111 11 135678999999999999987654 78888764221 11 Q ss_pred hhhhhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---eEEE Q lcl|Aclame:pro 70 VHHSSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---VYWW 145 (344) Q Consensus 70 ~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---~~y~ 145 (344) .| . -..++..+||+++++++|++. +.+++++||+|+++.|+..|++++|+|++|..|++..+.+ .+|. T Consensus 77 -~~------~-~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~~~~~~~~~~~~y~ 148 (409) T protein:vir:93 77 -NT------E-VSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYS 148 (409) T ss_pred -cc------h-HHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEE Confidence 11 1 124566789999999999765 5688999999999999999999999999999998765433 3455 Q ss_pred E-cCCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHH Q lcl|Aclame:pro 146 V-PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEML 224 (344) Q Consensus 146 ~-~~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~l 224 (344) + ..+|..+.|+++||||+|.+++.++++|+||+.+++++++++.+++++. ++.++..++++++ +++.+++++++++ T Consensus 149 ~~~~~g~~~~~~~~eVih~r~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~-~~~~l~~e~~~~~ 225 (409) T protein:vir:93 149 IHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLK-YGSNVGKEKRQQV 225 (409) T ss_pred EEcCCceEEEEccccEEEeCCCCCCCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCceEEe-cCCCCCHHHHHHH Confidence 4 3557778899999999998878899999999999999999999999884 6666666677776 4578999999999 Q ss_pred HHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHH Q lcl|Aclame:pro 225 RENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKV 304 (344) Q Consensus 225 k~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~ 304 (344) ++.|++.. +|+++++++ ++|++|+|++++++|+||+|++++++++||++|||||++||+. ++++++|+|++ T Consensus 226 ~~~~~~~~--~~~g~~~vl-----~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~--~~~~~sn~e~~ 296 (409) T protein:vir:93 226 LEDFKQYY--EENGGILFQ-----EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNAR--SNTNFAKNEEL 296 (409) T ss_pred HHHHHHHh--hcCCCeeec-----CCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC--CCCCcccHHHH Confidence 99998754 367889888 4688999999999999999999999999999999999999974 55789999999 Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 305 AKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 305 ~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) .+.|+++||+|++++|| ++|++|.++..+-..|.++||-. T Consensus 297 ~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~~~~~~fd~~ 337 (409) T protein:vir:93 297 NRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVK 337 (409) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcccccCcceEEeech Confidence 99999999999999998 79999987653323344444322 No 58 >protein:vir:8418 Length: 409 # NCBI annotation: gp13 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID:1260067 Probab=100.00 E-value=1e-63 Score=365.88 Aligned_cols=325 Identities=15% Similarity=0.163 Sum_probs=246.7 Q ss_pred CCCC----CCCCCCCchhhccccccceEEEEc----CCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhh Q lcl|Aclame:pro 1 MSKK----KGKTLQPAAKKMTASAPKMEAFTF----GEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHH 72 (344) Q Consensus 1 msk~----~~~~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~ 72 (344) |+-= +++..................+++ -.++.+|.+++|++||..|+++.+ ++|+.+++..+..+...| T Consensus 1 Mgl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~v~~ia~~iA-~lp~~~~~~~~~~~~~~~- 78 (409) T protein:vir:84 1 MSLFTRIFSGPSEERTLTKISGIPSPAEDWAMHGDRPGANSAMTLGAFYACVTLLADTVA-SLSIDAYRKKDNVRIPVS- 78 (409) T ss_pred CchhhhhhcCCCcccccccccccccccchhhccCcccchhhhhccHHHHHHHHHHHHhhh-hCceEEEEecCCcccccc- Confidence 4321 111111111111100011111111 135688999999999999987755 788877654333222211 Q ss_pred hhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEE-ECCCCceEEEEEecCcceeccccCc---eEEE-- Q lcl|Aclame:pro 73 SSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKR-YSTTGKVIRLETSPAKYTRRGVEED---VYWW-- 145 (344) Q Consensus 73 ~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~-r~~~G~~~~L~pl~~~~v~~~~~~~---~~y~-- 145 (344) . -..++..+||+++++++|++. +.+++++||+|++|. |+..|+|++|+|++|.+|++....+ .++. T Consensus 79 ------~-l~~lL~~~PN~~~t~~~f~~~l~~~l~l~Gn~~~~i~~~~~~g~~~~L~~l~p~~v~v~~~~~~~~~~~~~~ 151 (409) T protein:vir:84 79 ------P-APKLLESTPYPGLTWFDWLWMLMESLAVTGNAFGYISARDEANRPTAIMPIHPDCIHVTDAKDEDGDWIEPV 151 (409) T ss_pred ------h-HHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEECCCCceEEEEEEcCceeEEEEcCCCcceEEEEE Confidence 1 123556789999999999875 458889999999986 7888999999999999988754322 2232 Q ss_pred EcCCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHH Q lcl|Aclame:pro 146 VPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLR 225 (344) Q Consensus 146 ~~~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk 225 (344) +..+| .+|+++||||+|.+++.+.++|+||+..+..++.++.++++|+.++|+||++|+|||++++ .+++|+.++++ T Consensus 152 ~~~~g--~~~~~~dvih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~-~l~~e~~~~~~ 228 (409) T protein:vir:84 152 YRIDG--KVVPNHRIMHIKRYPVAGCALGMSPIEKAASAIGLGLAAERYGLRWFRDSANPSGILSSDA-DLTPDQVKQTQ 228 (409) T ss_pred ecCCc--eEEchhhEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCC-CCCHHHHHHHH Confidence 23344 4688999999999887777899999999999999999999999999999999999999864 68999999999 Q ss_pred HHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHH Q lcl|Aclame:pro 226 ENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVA 305 (344) Q Consensus 226 ~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~ 305 (344) +.|.+.. .|+++++|| ++|++|++++++++|+||+|++++++++||++|||||++||+.++++.+++|+|++. T Consensus 229 ~~~~~~~--~n~g~~~vl-----~~g~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~e~~~ 301 (409) T protein:vir:84 229 KQWIQSH--HNRRLPAVM-----SAGIKWQSVSITPNESQFLETRSFQRSEIAMWFRIPPHMIGDVEKSTSWGTGIEEQG 301 (409) T ss_pred HHHHHHh--ccCCCeeec-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccchHHHHH Confidence 9996543 578899998 468899999999999999999999999999999999999999877777789999999 Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhCCc-ceeccccccCCCCC Q lcl|Aclame:pro 306 KVFVRNELIPLQDRIR-EINGWLGQE-VIRFKNYSLDTDNG 344 (344) Q Consensus 306 ~~f~~~~l~P~~~~ie-eln~~L~~~-~~~f~~y~l~~~~~ 344 (344) +.|+++||.||++.|| +||++|... .++|+.-.|...|= T Consensus 302 ~~f~~~~l~P~~~~ie~~l~~~L~~g~~i~fd~~~l~~~d~ 342 (409) T protein:vir:84 302 INFVRHTLLPWLRCIEQALDTFLPRGQFVKFNVDGLMRGDV 342 (409) T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCeEEEechhhhccCH Confidence 9999999999999998 799998442 34555444433332 No 59 >protein:vir:94426 Length: 409 # NCBI annotation: ORF009 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240003;genbank:gi:66395665;genbank:GeneID:5133086 Probab=100.00 E-value=5.5e-63 Score=361.92 Aligned_cols=320 Identities=15% Similarity=0.157 Sum_probs=245.5 Q ss_pred CCCCCCCCCCCch---hhccccccceEEEE------c--CCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcc Q lcl|Aclame:pro 1 MSKKKGKTLQPAA---KKMTASAPKMEAFT------F--GEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAA 69 (344) Q Consensus 1 msk~~~~~~~~~~---~~~~~~~~~~~~~~------~--~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~ 69 (344) |||.+-...--.. +....+.+....++ + ..+..++.+++|++||.+|+++. .++|+.+++-.+. T Consensus 1 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~v~~~i~~Ia~~i-a~lp~~~~~~~~~---- 75 (409) T protein:vir:94 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSM-ASLPLKMYEDYKV---- 75 (409) T ss_pred CcccccchhhhhHHhhhhhcCCcccccccccccCccccccchhhhhccHHHHHHHHHHHHhh-hhCceeEeecccc---- Confidence 9886533222111 11111111111111 1 23456889999999999988765 4888887642221 Q ss_pred hhhhhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---eEEE Q lcl|Aclame:pro 70 VHHSSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---VYWW 145 (344) Q Consensus 70 ~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---~~y~ 145 (344) ..|. -..++..+||++++++.|++. +.+++++||+|++|+|+..|++++|+|++|..|++..+.+ .+|. T Consensus 76 ~~~~-------~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~ 148 (409) T protein:vir:94 76 VNTE-------VSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYS 148 (409) T ss_pred cchh-------HHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEE Confidence 1121 123566789999999999865 5688999999999999999999999999999998765432 3455 Q ss_pred E-cCCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHH Q lcl|Aclame:pro 146 V-PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEML 224 (344) Q Consensus 146 ~-~~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~l 224 (344) + ...|..++|+++||||+|.+++.++++|+||+..++.+++++.+++++. ++.++..++++++. ++.+++++.+++ T Consensus 149 ~~~~~g~~~~~~~~dvih~r~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~-~~~l~~e~~~~~ 225 (409) T protein:vir:94 149 IHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKY-GSNVGKEKRQQV 225 (409) T ss_pred EEcCCceEEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCeeEEec-CCCCCHHHHHHH Confidence 4 3457778899999999998878899999999999999999999999884 66666666677764 567999999999 Q ss_pred HHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHH Q lcl|Aclame:pro 225 RENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKV 304 (344) Q Consensus 225 k~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~ 304 (344) ++.|++.. +|++++++| ++|++|+|++++++|+||+|++++++++||++|||||++||+. +.++++|+|++ T Consensus 226 ~~~~~~~~--~~~g~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~--~~~~~sn~e~~ 296 (409) T protein:vir:94 226 LEDFKQYY--EENGGILFQ-----EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNAR--SNTNFAKNEEL 296 (409) T ss_pred HHHHHHHh--hcCCCeeec-----CCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC--CCCCcccHHHH Confidence 99998755 377889998 4688999999999999999999999999999999999999974 45789999999 Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 305 AKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 305 ~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) .+.|+++||.|+++.|| +||++|.++..+-..+.++||-. T Consensus 297 ~~~f~~~~l~P~~~~ie~~ln~~Ll~~~~~~~~~~i~fd~~ 337 (409) T protein:vir:94 297 NRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVK 337 (409) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcccccCcceEEeech Confidence 99999999999999998 79999977543212333333322 No 60 >protein:vir:2683 Length: 412 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075502;genbank:gi:12719431;genbank:GeneID:920150 Probab=100.00 E-value=3.6e-63 Score=362.89 Aligned_cols=318 Identities=14% Similarity=0.158 Sum_probs=242.7 Q ss_pred CCC-----CCCCCCCCchhhccccccceEEE------Ec--CCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhh Q lcl|Aclame:pro 1 MSK-----KKGKTLQPAAKKMTASAPKMEAF------TF--GEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLR 67 (344) Q Consensus 1 msk-----~~~~~~~~~~~~~~~~~~~~~~~------~~--~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~ 67 (344) ++| |-+++....... .+......| ++ ..+..++.+++|++||.+|+++.+ ++|+.+++..+. T Consensus 4 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~v~~~i~~ia~~iA-~lp~~~~~~~~~-- 78 (412) T protein:vir:26 4 IAKENIVTRIKKKLIDNWID--QSTSKLYDFSPWKNRSFWGVINNTLETNETIFSAITKLSNSMA-SLPLKMYEDYKV-- 78 (412) T ss_pred chhhhhhhhhhhhHhhhhhc--ccccccccccccCCccccccchhhhhccHHHHHHHHHHHHhHh-hCceeEeecccc-- Confidence 333 211111111100 011111111 11 135688999999999999987654 788887653221 Q ss_pred cchhhhhhhhhhhhhHHHhcccCCCCCHHHHHH-HHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---eE Q lcl|Aclame:pro 68 AAVHHSSPIYVKRNILASTFIPHPWLSQQDFSR-FVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---VY 143 (344) Q Consensus 68 ~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~-~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---~~ 143 (344) . .|. -..++..+||+++++++|++ ++.+++++||+|+++.|+..|++++|+|++|..|++..+.+ .+ T Consensus 79 -~-~~~-------~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~ 149 (412) T protein:vir:26 79 -V-NTE-------VSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELY 149 (412) T ss_pred -c-cch-------HHHHHHhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEE Confidence 1 111 12356678999999999976 55689999999999999999999999999999998876543 34 Q ss_pred EEEc-CCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHH Q lcl|Aclame:pro 144 WWVP-SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIE 222 (344) Q Consensus 144 y~~~-~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~ 222 (344) |.+. .+|..+.|+++||||+|.+++.++++|+||+..++.++.++.+++++. ++.++..++++++. ++.+++|+.+ T Consensus 150 y~~~~~~g~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~a~~~~~--~~~~~~~~~~i~~~-~~~l~~e~~~ 226 (412) T protein:vir:26 150 YSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKY-GSNVGKEKRQ 226 (412) T ss_pred EEEEcCCceEEEEccccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCceEEec-CCCCCHHHHH Confidence 4443 456778899999999999878899999999999999999999999884 66666667777764 5679999999 Q ss_pred HHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHH Q lcl|Aclame:pro 223 MLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIE 302 (344) Q Consensus 223 ~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e 302 (344) ++++.|++.. +|++++++| ++|++|+|++++++|+||+|++++++++||++|||||++||+. ++++++|+| T Consensus 227 ~~~~~~~~~~--~~~g~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVPp~~lg~~--~~~~~sn~e 297 (412) T protein:vir:26 227 QVLEDFKQYY--EENGGILFQ-----EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNAR--SNTNFAKNE 297 (412) T ss_pred HHHHHHHHHh--hcCCCeeec-----CCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC--CCCCcccHH Confidence 9999998754 367889998 4689999999999999999999999999999999999999974 457899999 Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 303 KVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 303 ~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) ++.+.|+++||+|++++|| +||++|.++..+-..+.++||-. T Consensus 298 ~~~~~f~~~~l~P~~~~ie~~ln~kLl~~~~~~~~~~~~fd~~ 340 (412) T protein:vir:26 298 ELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVK 340 (412) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccCcceEEeech Confidence 9999999999999999998 79999976543322333333322 No 61 >protein:vir:81218 Length: 423 # NCBI annotation: gp3, phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456733;genbank:gi:157168376;interpro:IPR006427;interpro:IPR006944;uniprot:Q9MBK2;genbank:GeneID:5580341 Probab=100.00 E-value=5.8e-63 Score=361.78 Aligned_cols=328 Identities=12% Similarity=0.093 Sum_probs=240.3 Q ss_pred CCCCCCCCCCCchhhccccccceEEEE-cCC----ccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFT-FGE----PVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSP 75 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~-~~~----p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~ 75 (344) |.++++...++.... -........+ .+. ...++.+++|++||.+|+++. .++|+.+++... ++....+ T Consensus 7 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~i-a~lp~~~~~~~~----dg~~~~~ 79 (423) T protein:vir:81 7 LGLAPSVVATPEPIE--LVGPIFESLKLSTKNMTVEQIWEDQPHLRTVTTFIARNV-ASLQLQAFERVE----DGGRERV 79 (423) T ss_pred hccccccccCccccc--cccccccccccccchhhHHHHHHhhhHHHHHHHHHHHhH-hhCceEEEEEec----CCceeee Confidence 333333222222111 0000000010 011 112346789999999998764 578888754321 1111111 Q ss_pred hhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECC--CCceEEEEEecCcceeccccC----ceEEEEc- Q lcl|Aclame:pro 76 IYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYST--TGKVIRLETSPAKYTRRGVEE----DVYWWVP- 147 (344) Q Consensus 76 i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~--~G~~~~L~pl~~~~v~~~~~~----~~~y~~~- 147 (344) ..+... .++ .+||+++++..|++. +.+++++||+|+++.|+. .+.++.|+|+++..+++.... ..+|.+. T Consensus 80 ~~~~~~-~ll-~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~rd~~~~~~~~~l~p~~~~~v~~~~~~~~~~~~~Y~~~~ 157 (423) T protein:vir:81 80 REGHLA-RVC-KLANSDMTMYDLLERTMFDLCLYDEFFWLLPGDLGVDTPTLDIRPIPVSWVQRRAYKDGWGSLDYIIIE 157 (423) T ss_pred ccchHH-HHh-hcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcCcceEEEeecccceeeeeeccCCCcceEEEEEE Confidence 111111 233 379999999999875 458899999999999985 356778888888877654332 2344432 Q ss_pred ---CCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCC----CCCCHHH Q lcl|Aclame:pro 148 ---SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTD----AVQDRND 220 (344) Q Consensus 148 ---~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~----~~l~~e~ 220 (344) .+|..++++++||||+|.+++.+.++|+||+..++++++.+.++++|+.++|+||++|+|||+++. ..+++|+ T Consensus 158 ~~~~~g~~~~~~~~evih~r~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gvi~~~~~~~~~~l~~e~ 237 (423) T protein:vir:81 158 SGDNDGRSVKVPGERVIHRHGYNPKTMKRGKSPVQSLRDILGEQIEAAIFRAQMWRNGPRPGMVIMRDPESKAGKWDAES 237 (423) T ss_pred ecCCCceEEEEcccceEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcccCccCCHHH Confidence 357778999999999999988777899999999999999999999999999999999999998753 3589999 Q ss_pred HHHHHHHHHHh--hccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhcccccccccc Q lcl|Aclame:pro 221 IEMLRENMVKS--KGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSL 298 (344) Q Consensus 221 ~~~lk~~~~~~--~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~ 298 (344) ++++++.|++. .|.+|+|+++|| +.|++|+|++++++|+||+|++++++++||++|||||++||+.+ .+++ T Consensus 238 ~~~~~~~~~~~~~~~~~n~g~~~vl-----~~g~~~~~l~~s~~d~q~~e~~~~~~~eIa~~fgVPp~~lg~~~--~~t~ 310 (423) T protein:vir:81 238 RTRFMANLRASFSPKSSDVGGTLLL-----EDGMKAENFHTTSKDEQTVETTKLSLQTVAQVYGINPTMVGQLD--NANY 310 (423) T ss_pred HHHHHHHHHHHhccccccCCcceec-----CCCceEEeccCChhhHHHHHHHHhhHHHHHHHhCCCHHHhcCCC--CCCc Confidence 99999999864 367899999999 45889999999999999999999999999999999999999864 4689 Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcc--------eeccccccCCCCC Q lcl|Aclame:pro 299 GDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEV--------IRFKNYSLDTDNG 344 (344) Q Consensus 299 ~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~--------~~f~~y~l~~~~~ 344 (344) +|+|++.+.|+++||+|+++.|| +||++|.++. ++|+.-.|.-.|- T Consensus 311 sn~e~~~~~f~~~~L~P~~~~ie~~l~~~L~~~~~~~~~~~~~~fd~~~llr~d~ 365 (423) T protein:vir:81 311 SNVREFRKALYGDNLGSWIRIIQDVMNLFLLPRVGIDNEKFYFEFNLEEKLRASF 365 (423) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCccccccCccEEEecchhhhccCH Confidence 99999999999999999999998 7999997643 3333222221111 No 62 >protein:vir:96980 Length: 409 # NCBI annotation: ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Probab=100.00 E-value=9.3e-63 Score=360.66 Aligned_cols=320 Identities=14% Similarity=0.149 Sum_probs=243.4 Q ss_pred CCCCCCCCCCCch---hhccccccceEEE------Ec--CCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcc Q lcl|Aclame:pro 1 MSKKKGKTLQPAA---KKMTASAPKMEAF------TF--GEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAA 69 (344) Q Consensus 1 msk~~~~~~~~~~---~~~~~~~~~~~~~------~~--~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~ 69 (344) |+|-+-..+--.. +....+.+....+ +| -.+..++.+++|++||.+|+++.+ ++|+.+++-.+ .. T Consensus 1 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~V~~ci~~ia~~ia-~lp~~~~~~~~---~~ 76 (409) T protein:vir:96 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMA-SLPLKMYEDYK---VV 76 (409) T ss_pred CccccchhhhhhHHhhhhhccccccccccccccCccccccchhhHhhhHHHHHHHHHHHHhhh-hCceEEeeccc---cc Confidence 8774322221110 0000111111111 11 135678999999999999987654 78888765322 11 Q ss_pred hhhhhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---eEEE Q lcl|Aclame:pro 70 VHHSSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---VYWW 145 (344) Q Consensus 70 ~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---~~y~ 145 (344) .|. ...++..+||+++++++|++. +.+++++||||++|.|+..|++++|+|++|..|++..+.+ .+|. T Consensus 77 -~~~-------l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~ 148 (409) T protein:vir:96 77 -NTE-------VSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYS 148 (409) T ss_pred -chh-------HHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEE Confidence 111 124566789999999999764 5688999999999999999999999999999998875433 3454 Q ss_pred E-cCCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHH Q lcl|Aclame:pro 146 V-PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEML 224 (344) Q Consensus 146 ~-~~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~l 224 (344) + ...|..+.|+++||||+|.+.+.++++|+||+..++.++.++.+++++. ++.++..++++++ +++.+++|+++++ T Consensus 149 ~~~~~g~~~~~~~~evih~r~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~-~~~~l~~e~~~~~ 225 (409) T protein:vir:96 149 IHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLK-YGSNVSTEKRQQV 225 (409) T ss_pred EEcCCceEEEEccccEEEeCCCCCCCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCceeEEe-cCCCCCHHHHHHH Confidence 4 3457788999999999998877899999999999999999999998874 5555555555665 5678999999999 Q ss_pred HHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHH Q lcl|Aclame:pro 225 RENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKV 304 (344) Q Consensus 225 k~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~ 304 (344) ++.|++.. +|+++++++ ++|++|+|++++++|+||+|++++++++||++|||||++||+. +.++++|+|++ T Consensus 226 ~~~~~~~~--~n~g~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~--~~~~~s~~e~~ 296 (409) T protein:vir:96 226 LEDFKQYY--EENGGILFQ-----EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNAR--SNTNFAKNEEL 296 (409) T ss_pred HHHHHHHh--hcCCCeeec-----CCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC--CCCCcccHHHH Confidence 99998754 477889998 4688999999999999999999999999999999999999974 45789999999 Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 305 AKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 305 ~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) .+.|+++||.|++++|| +||++|.++..+-..+.++|+-. T Consensus 297 ~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~i~fd~~ 337 (409) T protein:vir:96 297 NRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVK 337 (409) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcccccCcceEEeech Confidence 99999999999999998 79999977543323344444322 No 63 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=100.00 E-value=3.4e-62 Score=357.54 Aligned_cols=333 Identities=14% Similarity=0.070 Sum_probs=239.1 Q ss_pred CCCCCC-----CCCCCchhhc-ccccc-ceEEEEcCC----------ccccccchhHHHHhhhhhcCcceeccccHHHHH Q lcl|Aclame:pro 1 MSKKKG-----KTLQPAAKKM-TASAP-KMEAFTFGE----------PVPVLDRRDILDYVECISNGRWYEPPISFTGLA 63 (344) Q Consensus 1 msk~~~-----~~~~~~~~~~-~~~~~-~~~~~~~~~----------p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~ 63 (344) |.|.|- ++..+..... ..+.. ....-+..+ ...+|.+++|++||.+|++.. .++|+.+++.. T Consensus 71 ~kk~~i~~pfkkk~~~~~~d~f~~s~es~s~vtsls~pdaf~~vnVs~~~AlknsaV~scI~~IA~sI-AsLPlklYrr~ 149 (945) T protein:vir:10 71 LKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKL-TSKELEIYKHI 149 (945) T ss_pred HHhhcccccccccccchhhhhhhccCccceecccccCccceeeehhhhhhhhccHHHHHHHHHHHhhh-ccCceEEEEec Confidence 443333 2223221111 01111 111111222 245677899999999988764 58888876532 Q ss_pred HHhhcchhhhhhhhhhhh-hHHHhcccCCCCCHHHHH-----HHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceecc Q lcl|Aclame:pro 64 KSLRAAVHHSSPIYVKRN-ILASTFIPHPWLSQQDFS-----RFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRG 137 (344) Q Consensus 64 ~~~~~~~~~~~~i~~~~~-~~~~~~~pn~~~~~~~f~-----~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~ 137 (344) +......... .+...+. ..++ .+||++|++.+|| .++.+++++||+|++++|+..|+|++|+|++|.+|++. T Consensus 150 edG~~~~~~k-k~~~~hpL~~LL-~rPNp~mT~~eFwqsFl~~Lv~dLLL~GNAYieIiRd~~G~ii~L~pLdPs~Vti~ 227 (945) T protein:vir:10 150 EDKHVNYYLK-RIRDARNILEFL-ERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPI 227 (945) T ss_pred ccCccccccc-ccccchHHHHHH-hCCCcccChhHHHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEE Confidence 2111110000 0000001 1233 3899999987754 34569999999999999999999999999999999876 Q ss_pred ccCc--eE--EEEc-CCceEEEEecccEE-EecCCCCCCC--ccccccchhhHHHHHHHHHHHHHHHHHHH-hcCCCceE Q lcl|Aclame:pro 138 VEED--VY--WWVP-SFNEPTAFAPGSVF-HLLEPDINQE--LYGLPEYLSALNSAWLNESATLFRRKYYE-NGAHAGYI 208 (344) Q Consensus 138 ~~~~--~~--y~~~-~~~~~~~~~~~eVi-H~r~~~~~~~--~~G~sp~~~~~~~i~~~~aa~~~~~~~f~-ng~~p~gi 208 (344) .+.+ .+ |... +++....++++|+| |+|.+++++. .+|+||+.++++++..+.++++|+.++|. ||++|+|| T Consensus 228 ~ddDG~~~y~Yv~~idG~~~~~v~a~DvIlhirn~s~DG~~~GyGlSPIeaa~~aI~~alAaek~aar~FskNGa~PsGI 307 (945) T protein:vir:10 228 LSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGI 307 (945) T ss_pred EcCCCcEEEEEEEecCCceEEEecCCceEEEeccCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCccceE Confidence 5543 22 3333 44455678888865 6677765433 35999999999999999999999999995 78999999 Q ss_pred EEeCC---------CCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHH Q lcl|Aclame:pro 209 MYVTD---------AVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLD 279 (344) Q Consensus 209 l~~~~---------~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~ 279 (344) |++++ +.+++++.+++++.|++..++.|++.++++ ++|++|+|++++++|+||+|++++++++||+ T Consensus 308 Lsvkg~~~~d~k~~~~LseEq~erlKe~wee~~sG~NnG~piVL-----deGmef~pLs~s~~DaQfLEsrkfs~eeIAr 382 (945) T protein:vir:10 308 LAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILS-----GGKFTWIDFKGKRRDMQFKELAEFVARKICA 382 (945) T ss_pred EEecCccccccccccccCHHHHHHHHHHHHHHhCCcccccceec-----CCCceEEEccCChhHHHHHHHHHHHHHHHHH Confidence 98752 458999999999999887777888888888 4689999999999999999999999999999 Q ss_pred HhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 280 AHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 280 ~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) +|||||++||+. +.++++|+|++.+.|+++||+|+++.|| +||++|...... ..+.++|+.. T Consensus 383 AFGVPP~lLG~~--e~st~SNiEqq~~~Fv~~tL~Pil~~IEqeLNrkLl~~~eg-~~i~fdFd~l 445 (945) T protein:vir:10 383 VYQVSPQDVGIL--EGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNE-KDIKLWFKED 445 (945) T ss_pred HhCCCHHHcccC--CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-ceeEEEecch Confidence 999999999986 4478899999999999999999999999 699998543221 2234444333 No 64 >protein:vir:80796 Length: 574 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504121;genbank:gi:158079308;genbank:GeneID:5666445 Probab=100.00 E-value=7.6e-63 Score=361.14 Aligned_cols=336 Identities=14% Similarity=0.159 Sum_probs=238.3 Q ss_pred CCCCCC----------CCCCCchhhc-ccccc-------ceEEE-----Ec-CCcc----ccccchhHHHHhhhhhcCcc Q lcl|Aclame:pro 1 MSKKKG----------KTLQPAAKKM-TASAP-------KMEAF-----TF-GEPV----PVLDRRDILDYVECISNGRW 52 (344) Q Consensus 1 msk~~~----------~~~~~~~~~~-~~~~~-------~~~~~-----~~-~~p~----~~~~~~~v~~~~~~~~~~~~ 52 (344) |..+.+ -...+..... ..++- +...+ .| ++|. ..+...+|+.|+.+++.++ T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~iv~~~i~~~~~~V~~~~~~i~~~i- 119 (574) T protein:vir:80 41 PYSMESIEKGMNGKTTAYMQPIIGEMSVNPGYKTKPSIRNSQDLHKTLKKFGNNIILNAIINTRSNQVSMYCKPARNSE- 119 (574) T ss_pred CCCHHHHHHhHhhhcccccchhhhhccccccccCcCccCCcccHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHhhh- Confidence 333211 0000000000 00000 00000 01 1222 2344567889988776654 Q ss_pred eeccccHHHHHHHhhcchhhhhhhhhhhhhHHHh--cccCCC-CCHHHH-HHHHHHHHhcCCeEEEEEECCCCceEEEEE Q lcl|Aclame:pro 53 YEPPISFTGLAKSLRAAVHHSSPIYVKRNILAST--FIPHPW-LSQQDF-SRFVLDFLVFGNAFLEKRYSTTGKVIRLET 128 (344) Q Consensus 53 ~~~p~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~--~~pn~~-~~~~~f-~~~~~~~ll~Gnay~~i~r~~~G~~~~L~p 128 (344) ..+|+.++......... .+.....+....++.. ..|||. +++.+| +.++.+++++||+|++++|+..|+|++|+| T Consensus 120 a~lp~~i~~kd~~~~~~-~~~~~~~~~l~~ll~~~~~~~nP~~~s~~ef~~~lv~~lll~Gnayi~i~r~~~G~~~~L~p 198 (574) T protein:vir:80 120 TGVGYEIRLKDIEAEPT-SHDIANIKRIESFLENTAQFRDPNRDNFTTFCKKLVRATYMYDQVNFEKVFDKDGNFIKFDT 198 (574) T ss_pred ccCceEEEEeccCCCcc-chhhhhhhHHHHHHhccCCCCCCccccHHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEE Confidence 47777764321100000 0000000111111111 123343 355545 556779999999999999999999999999 Q ss_pred ecCcceeccccC--------ceEEEEcCCceEEEEecccEEEecCCC---CCCCccccccchhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 129 SPAKYTRRGVEE--------DVYWWVPSFNEPTAFAPGSVFHLLEPD---INQELYGLPEYLSALNSAWLNESATLFRRK 197 (344) Q Consensus 129 l~~~~v~~~~~~--------~~~y~~~~~~~~~~~~~~eViH~r~~~---~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~ 197 (344) |+|.+|++..+. ..||++..++....|+++||||++... ..+++||+||+..++.+|.++.++++|+.+ T Consensus 199 l~p~~V~v~~d~~~~~~~~~~~y~~~~~g~~~~~~~~~eiih~~~~~~~~~~~~~~G~spi~~a~~~i~~~~~a~~~~~~ 278 (574) T protein:vir:80 199 VDPTTIFLATNGEGKLIKNGERFVQVIDNRIVAKFNERELAFAVRNPRADIEVGQYGYPELEIALKQFIAHENTEVFNDR 278 (574) T ss_pred EcCceeEEEEcCccccccCceEEEEEeCCceEEEEccccEEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHH Confidence 999999886543 347777888888999999999998643 335788999999999999999999999999 Q ss_pred HHHhcCCCceEEEeCC-CCCCHHHHHHHHHHHHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHH Q lcl|Aclame:pro 198 YYENGAHAGYIMYVTD-AVQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAA 275 (344) Q Consensus 198 ~f~ng~~p~gil~~~~-~~l~~e~~~~lk~~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~ 275 (344) ||+||++|+|||++++ ..+++++++++++.|++ +.|..|+|+++++. .+|++|+|++++++|+||+|+++++++ T Consensus 279 ~f~ng~~p~gil~~~~~~~ls~e~~~~lk~~~~~~~~G~~n~g~~~vl~----~~G~~~~~l~~s~~D~qfle~~~~~~~ 354 (574) T protein:vir:80 279 FFSHGGTTRGILHVKTGQQQSQQALDIFRREWRSSLAGINGSWQIPVVS----AEDVKFVNMTPSANDMQFEKWLNYLIN 354 (574) T ss_pred HHhccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceeec----CCCceEEEccCChhHHHHHHHHHHHHH Confidence 9999999999999864 45899999999999976 67789999986664 358999999999999999999999999 Q ss_pred HHHHHhcCCHHHhccccccc--------cccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 276 DLLDAHRIPFQLMGGKPENV--------GSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 276 ~Ia~~fgVPp~~lg~~~~~~--------~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) +||++|||||++||+.+..+ .+++|+|++.+.|+++||+|++++|| +||++|..+... .+.++|+.+ T Consensus 355 ~Ia~afgVPp~~lG~~~~~t~~gs~~~~~n~sn~E~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~~--~~~~~f~~~ 430 (574) T protein:vir:80 355 VISALYGIDPAEINFPNNGGATGSKGGSLNEGNSKEKMQASQNKGLQPLLRFIEDTVNTYIVAEFGE--KYQFQFRGG 430 (574) T ss_pred HHHHHhCCCHHHhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC--ceEEEeccc Confidence 99999999999999876533 35689999999999999999999999 799999765433 345555555 No 65 >protein:vir:80644 Length: 551 # NCBI annotation: gp23 # Family: family:all:2446 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468463;genbank:gi:157325038;genbank:GeneID:5601615 Probab=100.00 E-value=9.6e-62 Score=355.10 Aligned_cols=337 Identities=15% Similarity=0.103 Sum_probs=232.2 Q ss_pred CCCCCCCCCC--Cchhhcccccc---ceEEEEcCCcccc----ccchhHHHHhhhhhcCcceeccccHHHHHHH----hh Q lcl|Aclame:pro 1 MSKKKGKTLQ--PAAKKMTASAP---KMEAFTFGEPVPV----LDRRDILDYVECISNGRWYEPPISFTGLAKS----LR 67 (344) Q Consensus 1 msk~~~~~~~--~~~~~~~~~~~---~~~~~~~~~p~~~----~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~----~~ 67 (344) =+|+++.+.- +.........+ ......+.+-... ..+.-|.+||.++.+.++ +.+......... .+ T Consensus 45 k~~~~~~~a~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~npiv~~~I~~ia~~IA-~~~~~~~~~~~g~~~~i~ 123 (551) T protein:vir:80 45 KAMNNKEVAYSQPVIGSMSANPGFKTKPSIRNNQDLHGVLKKFGGNIILNAIINTRSNQVS-MYCKPARHSEKGVGFEVR 123 (551) T ss_pred HhhccCcceeecccccceecCcccccCccccChhHHHHHHHHhhcCHHHHHHHHHHHHHHh-hhhhhhhhhcCCCCceEE Confidence 2222222221 11000000000 0001111111111 123445799998876544 322221110000 00 Q ss_pred cchhhhhhh--hhhhh--hHHHhcccCCC-----CCHHHHH-HHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceecc Q lcl|Aclame:pro 68 AAVHHSSPI--YVKRN--ILASTFIPHPW-----LSQQDFS-RFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRG 137 (344) Q Consensus 68 ~~~~~~~~i--~~~~~--~~~~~~~pn~~-----~~~~~f~-~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~ 137 (344) ........+ ..... ..-+..+||++ +++.+|+ .++.+++++||+|++++|+..|+|++|+||+|.+|++. T Consensus 124 ~kd~~~~~~~~~~~~~~~i~~~l~~pn~~~~p~~~s~~~f~~~lv~dlll~Gnay~~i~rd~~G~~~~L~~l~p~~V~v~ 203 (551) T protein:vir:80 124 LKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSFSSFVKKIVRDTYMYDQVNFEKVFNRNQSMVRFVAKDPTTIFFA 203 (551) T ss_pred ecccCcccChhHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHhcCCEEEEEEECCCCcEEEEEEeCCceeEEE Confidence 000000000 00000 01122345554 3555555 56679999999999999999999999999999999876 Q ss_pred ccCc--------eEEEEcCCceEEEEecccEEEecCCC---CCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCc Q lcl|Aclame:pro 138 VEED--------VYWWVPSFNEPTAFAPGSVFHLLEPD---INQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAG 206 (344) Q Consensus 138 ~~~~--------~~y~~~~~~~~~~~~~~eViH~r~~~---~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~ 206 (344) .+.+ +|+++..++....|+++||||+|.+. +.+++||+||+.+++.+|..+.++++|+.+||+||++|+ T Consensus 204 ~~~~g~~~~~~~~y~~~~~g~~~~~~~~~eiiH~~~n~~~~~~~~~~G~spi~~a~~~i~~~~a~~~~~~~~f~Ng~~p~ 283 (551) T protein:vir:80 204 TTADGKIPDNGNRFVQVIDQKIVATFNAREMAFAVRNPRSDIYATGYGYPELEIALKQFIAHENTEAFNDRFFSHGGTTR 283 (551) T ss_pred ECCccccccCceEEEEEeCCcEEEEEcccceEEecccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc Confidence 5433 35566667777889999999998643 345788999999999999999999999999999999999 Q ss_pred eEEEeCC-CCCCHHHHHHHHHHHHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCC Q lcl|Aclame:pro 207 YIMYVTD-AVQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIP 284 (344) Q Consensus 207 gil~~~~-~~l~~e~~~~lk~~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVP 284 (344) |||.+++ ..+++++++++++.|++ +.|.+|+|+++|+. .+|++|+|++++++|+||+|++++++++||++|||| T Consensus 284 giL~~~~~~~lt~e~~~~lk~~~~~~~~G~~nag~~~vl~----~~g~~~~~l~~~~~D~qfle~~~~~~~~Ia~aFgVP 359 (551) T protein:vir:80 284 GILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQIPVVS----AEDVKFVNMTPSARDMEFEKWLNYLINVISALYGID 359 (551) T ss_pred eEEEEcCCCCCCHHHHHHHHHHHHHHhcCccccCcccccc----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhcCC Confidence 9999864 45899999999999976 67889999987774 358999999999999999999999999999999999 Q ss_pred HHHhcccccc--------ccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 285 FQLMGGKPEN--------VGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 285 p~~lg~~~~~--------~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) |++||+.... +.+++|+|++...|+++||+||+++|| +||++|..+.- ..|.|+|+.. T Consensus 360 p~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~f~~~tL~P~~~~ie~~ln~~L~~~~~--~~~~f~f~~~ 426 (551) T protein:vir:80 360 PAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGFIEDFINKHIVAEFG--DKYTFQFVGG 426 (551) T ss_pred HHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC--CceEEEeecc Confidence 9999986432 236899999999999999999999998 79999976432 2345555544 No 66 >protein:vir:4854 Length: 386 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049394;genbank:gi:9632422;genbank:GeneID:1258515 Probab=100.00 E-value=9.7e-62 Score=355.08 Aligned_cols=312 Identities=12% Similarity=0.117 Sum_probs=241.3 Q ss_pred CC---CCCCCCCCCchhhcccc---ccc-eEEEE---cCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcch Q lcl|Aclame:pro 1 MS---KKKGKTLQPAAKKMTAS---APK-MEAFT---FGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAV 70 (344) Q Consensus 1 ms---k~~~~~~~~~~~~~~~~---~~~-~~~~~---~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 70 (344) |+ +.++.+..+........ .+. ...+. .-.+..+|.+++|++||.+|+++.+ +.|+.+++. T Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia-~~p~~~~~~-------- 71 (386) T protein:vir:48 1 MPIFNITNLATESPPISQGGFFDITDPDFLSTLNGSEWVSAESALRNSDLFSIINQLSNDLA-TVKLTASRK-------- 71 (386) T ss_pred CcccccccccccccccccccccccccchhcccccCCceechhhhhcchHHHHHHHHHHHhhc-cCceeeccc-------- Confidence 43 22222222222111111 110 01111 1235677899999999999987754 788766431 Q ss_pred hhhhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccC---ceEEEE Q lcl|Aclame:pro 71 HHSSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEE---DVYWWV 146 (344) Q Consensus 71 ~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~---~~~y~~ 146 (344) ....+..+||+++++.+|++. +.+++++||||++++|+..|++++|+|+++..|++..+. ..+|.+ T Consensus 72 ----------~~~~l~~~pN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~~~~~~~~~y~~ 141 (386) T protein:vir:48 72 ----------QLQGIIDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNKDGIYYNI 141 (386) T ss_pred ----------hhHHHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEecCceeEEEEcCCCceEEEEE Confidence 123455689999999998764 568899999999999999999999999999999877653 235555 Q ss_pred cCC----ceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHH Q lcl|Aclame:pro 147 PSF----NEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIE 222 (344) Q Consensus 147 ~~~----~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~ 222 (344) ... +....|+++||||+|.+++.++++|+||+..++.+++++.++++|+.++|+||++|+|+|++++ .+++|+.+ T Consensus 142 ~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~ii~~~~-~~~~e~~~ 220 (386) T protein:vir:48 142 TFDDPRIPPKQHVPQGDVLHFKLLSVDGGLTSVSPLMALSRELNIQKASDKLTLNSLKNALNANGILKIKG-GGLLDFKT 220 (386) T ss_pred EecCccccceeEecCccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCC-CCCHHHHH Confidence 432 3457899999999999988878999999999999999999999999999999999999999875 58899999 Q ss_pred HHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHH Q lcl|Aclame:pro 223 MLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIE 302 (344) Q Consensus 223 ~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e 302 (344) ++++.|.. +..|+++++||+ .|++|+|++++++|+||+|++++++++||++|||||.+||+. ++++|++ T Consensus 221 ~~~~~~~~--~~~n~g~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~----~~~~~~e 289 (386) T protein:vir:48 221 KLSRSRQA--MKQMQGGPLVLD-----DLEEFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPENVVGGQ----GDQQSSL 289 (386) T ss_pred HHHHHHHH--hhcCCCCceecC-----CCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC----CCcccHH Confidence 99998865 446889999994 588999999999999999999999999999999999999852 4678999 Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccc-cccCCCCC Q lcl|Aclame:pro 303 KVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKN-YSLDTDNG 344 (344) Q Consensus 303 ~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~-y~l~~~~~ 344 (344) ++.+.|+++||+|+++.|| +||++|+.+. .|+. ..++.|.- T Consensus 290 ~~~~~~~~~~l~P~~~~ie~~l~~~l~~~~-~~~~~~~~~~d~~ 332 (386) T protein:vir:48 290 EMSLDLYNKAVSRYLRPFLSELSQKLSCDV-DADILPAVDPTGS 332 (386) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchh-hcchhhhhccChH Confidence 9999999999999999998 7999998753 2211 11111111 No 67 >protein:vir:63755 Length: 547 # NCBI annotation: gp14 # Family: family:all:2446 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547619;genbank:GeneID:3783506 Probab=100.00 E-value=1.2e-61 Score=354.58 Aligned_cols=335 Identities=15% Similarity=0.128 Sum_probs=229.9 Q ss_pred CCCCCCCCCCCchhhc--cccccce--EEEE--cC-Cccc--------c----ccchhHHHHhhhhhcCcceeccccHH- Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKM--TASAPKM--EAFT--FG-EPVP--------V----LDRRDILDYVECISNGRWYEPPISFT- 60 (344) Q Consensus 1 msk~~~~~~~~~~~~~--~~~~~~~--~~~~--~~-~p~~--------~----~~~~~v~~~~~~~~~~~~~~~p~~~~- 60 (344) |-|+......-..... ..+.+.+ ..|. |. .|.. . ..+.-|..||.++.+..+ ..+.... T Consensus 31 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~npiv~~~I~~~a~~ia-~~~~~~~~ 109 (547) T protein:vir:63 31 IQQREQEQISKAMNNKEVAYSQPVIGSMSANPGFKTKPSIRNNQDLHGVLKKFGGNIILNAIINTRSNQVS-MYCKPARH 109 (547) T ss_pred hhhhhHHHHHHhhcccchhhhchhhheeecccccccCCccCChhHHHHHHHHhhcCHHHHHHHHHHHHHHh-hhhhhhhh Confidence 3333211111110000 0001100 1110 11 1111 1 123456789888765443 1111100 Q ss_pred ---------HHHHHhhcchhhhhhhhhhhhhHHHhcccCCC-----CCHHHH-HHHHHHHHhcCCeEEEEEECCCCceEE Q lcl|Aclame:pro 61 ---------GLAKSLRAAVHHSSPIYVKRNILASTFIPHPW-----LSQQDF-SRFVLDFLVFGNAFLEKRYSTTGKVIR 125 (344) Q Consensus 61 ---------~l~~~~~~~~~~~~~i~~~~~~~~~~~~pn~~-----~~~~~f-~~~~~~~ll~Gnay~~i~r~~~G~~~~ 125 (344) ++....+....+...-...... +..+||++ +++.+| +.++.++|++||+|++++|+..|+|++ T Consensus 110 ~~~~~~~~ir~k~~~~~~~~~~~~~~~~l~~--~l~~pn~~~~p~~~s~~~f~~~lv~d~ll~Gn~~~~i~rd~~G~~~~ 187 (547) T protein:vir:63 110 SEKGVGFEVRLKDLDKKPTSHDEATIKRIES--FIEKTGVDNDINRDSFSSFVKKIVRDTYMYDQVNFEKVFNRNQSMVR 187 (547) T ss_pred hccCCCceeEecccccccChhhHHHHHHHHH--HHHhhCCCCCCccchHHHHHHHHHHHHHhhCCEEEEEEECCCCcEEE Confidence 0000000000110000000011 11234433 355555 456779999999999999999999999 Q ss_pred EEEecCcceeccccCc--------eEEEEcCCceEEEEecccEEEecCCCC---CCCccccccchhhHHHHHHHHHHHHH Q lcl|Aclame:pro 126 LETSPAKYTRRGVEED--------VYWWVPSFNEPTAFAPGSVFHLLEPDI---NQELYGLPEYLSALNSAWLNESATLF 194 (344) Q Consensus 126 L~pl~~~~v~~~~~~~--------~~y~~~~~~~~~~~~~~eViH~r~~~~---~~~~~G~sp~~~~~~~i~~~~aa~~~ 194 (344) |+||+|.+|++..+.+ +|+++..++....|+++||||+|.++. .++.||+||+.+++.+|.++.++++| T Consensus 188 L~~l~p~~V~~~~~~~g~~~~~~~~y~~~~~~~~~~~~~~~eiih~r~n~~~~~~~~~~G~Spi~~~~~~i~~~~~a~~~ 267 (547) T protein:vir:63 188 FVAKDPTTIFFATTADGKIPDNGNRFVQVIDQKIVATFNAREMAFAVRNPRSDIYATGYGYPELEIALKQFIAHENTEAF 267 (547) T ss_pred EEEecCceeEEEECCccccccCceEEEEEcCCcEEEEeccccEEEecccCCCCcccccccccHHHHHHHHHHHHHHHHHH Confidence 9999999998764332 355666677778899999999996543 34678999999999999999999999 Q ss_pred HHHHHHhcCCCceEEEeCC-CCCCHHHHHHHHHHHHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhh Q lcl|Aclame:pro 195 RRKYYENGAHAGYIMYVTD-AVQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKA 272 (344) Q Consensus 195 ~~~~f~ng~~p~gil~~~~-~~l~~e~~~~lk~~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~ 272 (344) +.+||+||++|+|||.+++ ..+++++++++++.|++ +.|.+|+|+++|+. .+|++|+|++++++|+||+|++++ T Consensus 268 ~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lk~~~~~~~~G~~nagk~~vl~----~~g~~~~~l~~~~~d~qfle~~~~ 343 (547) T protein:vir:63 268 NDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQIPVVS----AEDVKFVNMTPSARDMEFEKWLNY 343 (547) T ss_pred HHHHHHcCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhcCccccccccccc----CCCceEEEcCCChhHHHHHHHHHH Confidence 9999999999999999874 45899999999999976 67889999987774 358999999999999999999999 Q ss_pred hHHHHHHHhcCCHHHhcccccc--------ccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCC Q lcl|Aclame:pro 273 SAADLLDAHRIPFQLMGGKPEN--------VGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDN 343 (344) Q Consensus 273 ~~~~Ia~~fgVPp~~lg~~~~~--------~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~ 343 (344) ++++||++|||||++||+.... +.+++|+|++.+.|+++||+|++++|| +||++|..+.- ..|.++|+. T Consensus 344 ~~~~Ia~afgVPP~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~~~~~tL~P~~~~ie~~ln~~L~~~~~--~~~~~~f~~ 421 (547) T protein:vir:63 344 LINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGFIEDFINKHIVAEFG--DKYTFQFVG 421 (547) T ss_pred HHHHHHHHhCCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC--CceEEEeec Confidence 9999999999999999986432 247899999999999999999999998 79999976432 234555554 Q ss_pred C Q lcl|Aclame:pro 344 G 344 (344) Q Consensus 344 ~ 344 (344) . T Consensus 422 ~ 422 (547) T protein:vir:63 422 G 422 (547) T ss_pred c Confidence 4 No 68 >protein:vir:7407 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Probab=100.00 E-value=1.3e-61 Score=354.40 Aligned_cols=312 Identities=11% Similarity=0.053 Sum_probs=234.8 Q ss_pred CCCCCCCCCCCchhhccccccce---EEEE--------cCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcc Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKM---EAFT--------FGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAA 69 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~---~~~~--------~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~ 69 (344) |++.+++...+.+.......... ..++ .-++..+|.+++|++||.+|+++.+ ++|+.+++.. T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~v~~ia~~ia-~lp~~~~~~~------ 78 (392) T protein:vir:74 6 LNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLA-IVKINAEKKK------ 78 (392) T ss_pred hhhhhcccCcccccccccccccCchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhc-cCceeeccch------ Confidence 44433333222222111111100 0111 1246788999999999999987754 7888764321 Q ss_pred hhhhhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccC---ceEEE Q lcl|Aclame:pro 70 VHHSSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEE---DVYWW 145 (344) Q Consensus 70 ~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~---~~~y~ 145 (344) ...+..+||++++.+.|++. +.+++++||||++++|+..|++++|+|++|.+|++..+. ..+|. T Consensus 79 ------------~~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~~~~~~y~ 146 (392) T protein:vir:74 79 ------------NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYN 146 (392) T ss_pred ------------hhhhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEE Confidence 12234579999999999875 558899999999999999999999999999999877543 23555 Q ss_pred EcCC----ceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCC-CCHHH Q lcl|Aclame:pro 146 VPSF----NEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAV-QDRND 220 (344) Q Consensus 146 ~~~~----~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~-l~~e~ 220 (344) +... +....++++||||+|.+++.+.++|+||+.+++.+++++.++++|+.++|+||++|+|+|++++.. .++++ T Consensus 147 ~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~~~~~~~~~~ 226 (392) T protein:vir:74 147 ITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKD 226 (392) T ss_pred EEecCCccceeEEEcCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchHHH Confidence 5432 345789999999999988776689999999999999999999999999999999999999997643 33333 Q ss_pred HHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhcccccccccccc Q lcl|Aclame:pro 221 IEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGD 300 (344) Q Consensus 221 ~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n 300 (344) +++++ +++.|..|+++++|| ++|++|++++++++|+||+|++++++++||++|||||++||+... + ++ T Consensus 227 ~~~~~---~~~~~~~n~g~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~---~-~~ 294 (392) T protein:vir:74 227 KASRS---RSFMKRSRSGGPVVL-----DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGD---Q-QS 294 (392) T ss_pred HHHHH---HHHhccccCCCeeec-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC---c-cc Confidence 33333 345678899999999 458899999999999999999999999999999999999997532 2 24 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 301 IEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 301 ~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) .+++.++|+++||.|+++.|| ++|++|+.+ ++|+...+...+. T Consensus 295 ~~e~~~~~~~~~l~p~~~~ie~~l~~~l~~~-~~~~~~~~~~~d~ 338 (392) T protein:vir:74 295 SIQQISGMYASALNRYLRPAISELEYKLSDH-ISVNMRPAIDPLG 338 (392) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccch-hcccchhhhcCCH Confidence 466789999999999999998 799999876 4554433322232 No 69 >protein:vir:100187 Length: 385 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025029;genbank:gi:48697262;genbank:GeneID:2948285 Probab=100.00 E-value=2.6e-61 Score=352.77 Aligned_cols=314 Identities=13% Similarity=0.140 Sum_probs=245.0 Q ss_pred CCCCCCCCCCCchhhccccccc-e------EEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPK-M------EAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHS 73 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~-~------~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~ 73 (344) |+++...+...... .....+. . ..-..-++..+|..++|++||.+|+++.+ ++|+.+++.. T Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia-~~p~~v~~~~---------- 71 (385) T protein:vir:10 4 LTPRNFNKRKAKNM-VYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVA-SAHFKTENTA---------- 71 (385) T ss_pred ccchhccccccccc-ccccchhhhhhhccccCccccCHHHhhccHHHHHHHHHHHHHHh-hCceeeeccc---------- Confidence 54432222211111 1111110 0 01122356778999999999999987654 7887653210 Q ss_pred hhhhhhhhhHHHhcccCCCCCHHHHHHHH-HHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCce-EEEE--cCC Q lcl|Aclame:pro 74 SPIYVKRNILASTFIPHPWLSQQDFSRFV-LDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV-YWWV--PSF 149 (344) Q Consensus 74 ~~i~~~~~~~~~~~~pn~~~~~~~f~~~~-~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~-~y~~--~~~ 149 (344) ..-+..+||++++++.|++.+ .+++++||+|++++|+ +.+++|+++.+|++..+... +|.+ ..+ T Consensus 72 --------~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~r~----~~~~~p~~~~~v~~~~~~~~~~~~~~~~~~ 139 (385) T protein:vir:10 72 --------TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ----NLEHIPNSDVQINYLPGNMGIVYTVLESND 139 (385) T ss_pred --------hhhhhhcCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcC----ceeEeecCCceEEEEEcCCceEEEEEEcCC Confidence 111223799999999998754 5888999999999876 56799999999987765543 3333 456 Q ss_pred ceEEEEecccEEEecCCCC--CCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 150 NEPTAFAPGSVFHLLEPDI--NQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLREN 227 (344) Q Consensus 150 ~~~~~~~~~eViH~r~~~~--~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~ 227 (344) +...+|+++||||+|.+++ .++++|+||+..++.++.++.++++|..++|+||++|+|+|++++...++++++++++. T Consensus 140 ~~~~~~~~~eiihik~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~gil~~~~~~~~~e~~~~~~~~ 219 (385) T protein:vir:10 140 RPQMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREE 219 (385) T ss_pred ceEEEEccccEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHH Confidence 6778899999999997543 56889999999999999999999999999999999999999998777789999999999 Q ss_pred HHHhhccccccccccccCCCccccceeeecccchhHHHHH-HHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHH Q lcl|Aclame:pro 228 MVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFF-NIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAK 306 (344) Q Consensus 228 ~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~-e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~ 306 (344) |++..++.|+++++++ ++|++|+|+++++.|+|++ |++++++++||++|||||++||+...++++++|+|++.. T Consensus 220 ~~~~~~~~n~~~~~vl-----~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~sn~eq~~~ 294 (385) T protein:vir:10 220 FEKANTGDNSGRLMVL-----PDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKA 294 (385) T ss_pred HHHHhCccccCCcccc-----CCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCcccccHHHHHH Confidence 9988888999999999 4588999999999999985 999999999999999999999987767788999998755 Q ss_pred HHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 307 VFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 307 ~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) .| .+||+|+++.|| ++|++|+.+.++|+.-.|...|- T Consensus 295 ~~-~~~l~P~~~~ie~~l~~~l~~~~~~f~~~~ll~~d~ 332 (385) T protein:vir:10 295 TY-LANLNSYVNPIVDELRLKMNAPDLELDIKDMLDVDD 332 (385) T ss_pred HH-HHHHHHHHHHHHHHHHHhhCCceEEeechhhhccCH Confidence 54 569999999998 79999988777776555543333 No 70 >protein:vir:96579 Length: 576 # NCBI annotation: ORF012 # Family: family:all:2446 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238542;genbank:gi:66391267;genbank:GeneID:5130361 Probab=100.00 E-value=1.3e-60 Score=348.97 Aligned_cols=330 Identities=15% Similarity=0.110 Sum_probs=229.2 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEc-----CCcccc------------c-cchhHHHHhhhhhcCcceec------- Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTF-----GEPVPV------------L-DRRDILDYVECISNGRWYEP------- 55 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~-----~~p~~~------------~-~~~~v~~~~~~~~~~~~~~~------- 55 (344) +.++|.-..... ...+|-.-..+- ..|..+ + .+..|++||.++++..+... T Consensus 43 ~~~~~~~~~~~~----a~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~npiv~~~I~~ia~~vA~~~~~~~~~~ 118 (576) T protein:vir:96 43 KELNKSLYGKQQ----AYAEPFLEVMDTNPEFRTKRSYMKNSDNLHDVLKQFGNNPILNAIILTRSNQVAMYCQPSRYNE 118 (576) T ss_pred hhhccccCCccc----hhhcceeeeeecCCCccccCcchhhhhhhHHHHHHhhcCHHHHHHHHHHHHHHHhhhhhhhhcc Confidence 221111111111 111111000100 012111 1 13347899999887654221 Q ss_pred -----cccHHHHHHHhhcchhhhhh-hhhhhhhHHH-hcccCC-CCCHHHHH-HHHHHHHhcCCeEEEEEE--CCCCceE Q lcl|Aclame:pro 56 -----PISFTGLAKSLRAAVHHSSP-IYVKRNILAS-TFIPHP-WLSQQDFS-RFVLDFLVFGNAFLEKRY--STTGKVI 124 (344) Q Consensus 56 -----p~~~~~l~~~~~~~~~~~~~-i~~~~~~~~~-~~~pn~-~~~~~~f~-~~~~~~ll~Gnay~~i~r--~~~G~~~ 124 (344) ++.++.... ....+... +....+.+.. ...||+ ++++.+|+ .++.+++++||+|+++++ ++.|+++ T Consensus 119 ~~~~~~i~lk~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~dlll~Gna~~~i~~~rd~~g~~~ 195 (576) T protein:vir:96 119 RGLGFEVRMRDLDA---EPGKKEKEEIKRIENFILNTGRDKDIDRDSFQSFCRKIVRDTYTYDQVNFEKVFNKKNATTMD 195 (576) T ss_pred ccccceeEEecCcC---ccchhhhHhhhhHHhhHhhccCCCCCccccHHHHHHHHHHHHHhcCCeEEEEEEecCCCCceE Confidence 222111000 00111111 1111111111 112333 45766665 566799999999999985 4568899 Q ss_pred EEEEecCcceeccccCce--------EEEEcCCceEEEEecccEEEec-CCCC--CCCccccccchhhHHHHHHHHHHHH Q lcl|Aclame:pro 125 RLETSPAKYTRRGVEEDV--------YWWVPSFNEPTAFAPGSVFHLL-EPDI--NQELYGLPEYLSALNSAWLNESATL 193 (344) Q Consensus 125 ~L~pl~~~~v~~~~~~~~--------~y~~~~~~~~~~~~~~eViH~r-~~~~--~~~~~G~sp~~~~~~~i~~~~aa~~ 193 (344) +|+||+|.+|++..+.+. |+++..++....|+++||||++ .+.+ ..+.||+||+.+++.+|.++.++++ T Consensus 196 ~L~pl~p~~V~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~ 275 (576) T protein:vir:96 196 KFIAVDPSTIFYATDKNGKIIKGGKRFVQVINKKVVASFTSREMAMGIRNPRTELSSSGYGLSEVEIAMKQFIAYNNTET 275 (576) T ss_pred EEEEeCCceeEEEECCCCceeeeeeEEEEecCCceEEEecccceEEEeecCCCCcccCcccccHHHHHHHHHHHHHHHHH Confidence 999999999998765542 3445566777889999998765 3332 3478899999999999999999999 Q ss_pred HHHHHHHhcCCCceEEEeCC-CCCCHHHHHHHHHHHHH-hhcccccccc-ccccCCCccccceeeecccchhHHHHHHHH Q lcl|Aclame:pro 194 FRRKYYENGAHAGYIMYVTD-AVQDRNDIEMLRENMVK-SKGRNNFKNL-FLYAPQGKADGIKIIPLSEVATKDDFFNIK 270 (344) Q Consensus 194 ~~~~~f~ng~~p~gil~~~~-~~l~~e~~~~lk~~~~~-~~g~~n~~~~-~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~ 270 (344) |+.+||+||++|+|||++++ ..+++++++++++.|++ ++|.+|++++ +|| ++|++|+|++++++|+||+|++ T Consensus 276 ~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lr~~~~~~~~G~~nag~~p~vl-----~~G~~~~~ls~~~~d~qfle~~ 350 (576) T protein:vir:96 276 FNDRFFSHGGTTRGILQIKSEQQQSQRALENFKREWKSSFSGINGSWQVPVVM-----ADDIKFVNMTPTANDMQFEKWL 350 (576) T ss_pred HHHHHHhccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceeec-----CCCceEEeccCChhhHHHHHHH Confidence 99999999999999999875 46899999999999976 6788999995 677 4689999999999999999999 Q ss_pred hhhHHHHHHHhcCCHHHhccccccc---------cccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccC Q lcl|Aclame:pro 271 KASAADLLDAHRIPFQLMGGKPENV---------GSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLD 340 (344) Q Consensus 271 ~~~~~~Ia~~fgVPp~~lg~~~~~~---------~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~ 340 (344) ++++++||++|||||++||+.+..+ .+++|+|++.+.|+++||+||+++|| +||++|..+.. ..|.++ T Consensus 351 ~~~~~~Ia~afgVPp~~lG~~~~~~~~g~~~~~s~t~sn~e~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~--~~~~~~ 428 (576) T protein:vir:96 351 TYLINIISALYGIDPAEIGFPNRGGATGGKGGNTLNEADPGKKQQQSQNKGLQPLLRFIEDLINTHIISEYS--DKYVFQ 428 (576) T ss_pred HHhHHHHHHHhCCCHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcc--CceEEE Confidence 9999999999999999999875443 26799999999999999999999999 69999987643 345666 Q ss_pred CCCC Q lcl|Aclame:pro 341 TDNG 344 (344) Q Consensus 341 ~~~~ 344 (344) |+.+ T Consensus 429 f~r~ 432 (576) T protein:vir:96 429 FVGG 432 (576) T ss_pred eccC Confidence 6666 No 71 >protein:vir:3843 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050149;swissprot:trembl:q9t1f8;genbank:gi:9633041;uniprot:Q9T1F8;genbank:GeneID:1262206 Probab=100.00 E-value=2.3e-60 Score=347.58 Aligned_cols=313 Identities=12% Similarity=0.086 Sum_probs=241.6 Q ss_pred CCCCCCCCCCCchhhccccccceEE------EEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEA------FTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSS 74 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~------~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~ 74 (344) |+-=++.+..........++ .... -..-+++.+|++++|++||.+|+++.+ +.|+.. .++ T Consensus 1 M~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~al~~~~V~~~v~~ia~~ia-~~p~~~----------~~~-- 66 (397) T protein:vir:38 1 MPLLKLNKSHSQGFSLNDPD-WVNFLTGGEAQKYVSADTALKNSDIFSLIMQLSGDLA-MVRYTS----------ESD-- 66 (397) T ss_pred CcchhhhhcccCcccCCchh-hhhhhcCCcCCceechHHhhccHHHHHHHHHHHHHHh-hCcccc----------ccc-- Confidence 65433222111111001100 1111 112245678999999999999987654 676632 111 Q ss_pred hhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---eEEEEc--- Q lcl|Aclame:pro 75 PIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---VYWWVP--- 147 (344) Q Consensus 75 ~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---~~y~~~--- 147 (344) ....+..+||+++++..|++. +.+++++||||++++|+..|++++|+|++|.+|++..+.+ .+|.+. T Consensus 67 ------~~~~l~~~PN~~~s~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~l~~~~v~i~~~~~~~~~~y~~~~~~ 140 (397) T protein:vir:38 67 ------RSQSIISNPSVTANGYSFWQGMFAQLLLDGNCYAYRHKNTNGVDLSWEYLRPSQVQPMLLQDGSGLIYNINFDE 140 (397) T ss_pred ------HHHHHHhcCCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEecc Confidence 124556789999999999765 5588999999999999999999999999999998765432 355553 Q ss_pred -CCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHH Q lcl|Aclame:pro 148 -SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRE 226 (344) Q Consensus 148 -~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~ 226 (344) ..+...+|+++||||+|.+++.+.++|+||+.++..++.++.++++++.++|+||++|+|+|+++. .+++++.+++++ T Consensus 141 ~~~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~-~~~~e~~~~~~~ 219 (397) T protein:vir:38 141 PAIGYMENVPAADVIHIRLLSKNGGKTGISPLSALINEQQIKDASNELTLKALKQSVTASAVLTIQK-GGLLDAETRIAR 219 (397) T ss_pred ccccceeEecCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCC-CCCHHHHHHHHH Confidence 245667899999999999988878999999999999999999999999999999999999999875 588999999999 Q ss_pred HHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHH Q lcl|Aclame:pro 227 NMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAK 306 (344) Q Consensus 227 ~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~ 306 (344) .|+..+++.|+++++|+ +.|++|++++.++.|+||+|++++++++||++|||||++||+... +++|+|++ . T Consensus 220 ~~~~~~~~~n~~~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~afgVp~~~lg~~~~---~~~~~e~~-~ 290 (397) T protein:vir:38 220 SKEISKQIHNSDGPVVI-----DALEDYKPLEVKGNIASLLNQVDWTRDQIAKVYGVPDSYLNGQGD---QQSSITQI-S 290 (397) T ss_pred HHHHHhcccccCCceec-----CCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC---cccHHHHH-H Confidence 99988888999999998 458899999999999999999999999999999999999997532 34677755 5 Q ss_pred HHHHHHHHHHHHHHH-HHHHhhCCcceecc-ccccCCCCC Q lcl|Aclame:pro 307 VFVRNELIPLQDRIR-EINGWLGQEVIRFK-NYSLDTDNG 344 (344) Q Consensus 307 ~f~~~~l~P~~~~ie-eln~~L~~~~~~f~-~y~l~~~~~ 344 (344) .|+.+||+|+++.|| +||++|..+. .|+ .+.++.|-- T Consensus 291 ~~~~~~l~P~~~~ie~~ln~~l~~~~-~~~~~~~~~~d~~ 329 (397) T protein:vir:38 291 GQYAKSLNRYVQAIVGELNDKLHANI-SANIRFAIDAMGD 329 (397) T ss_pred HHHHHHHHHHHHHHHHHHHHhccChh-cccccccccCCHH Confidence 688899999999998 7999998763 221 112221111 No 72 >protein:vir:100691 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:2446 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164747;genbank:gi:56693160;genbank:GeneID:3197324 Probab=100.00 E-value=2e-60 Score=347.90 Aligned_cols=333 Identities=9% Similarity=0.032 Sum_probs=236.9 Q ss_pred CCCCCCCCCCCch---------------hhccccc---cce----------------EEE------EcCCc------ccc Q lcl|Aclame:pro 1 MSKKKGKTLQPAA---------------KKMTASA---PKM----------------EAF------TFGEP------VPV 34 (344) Q Consensus 1 msk~~~~~~~~~~---------------~~~~~~~---~~~----------------~~~------~~~~p------~~~ 34 (344) |+.||...-.... .+...+. ..+ ..| ..++| .++ T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~t~ 92 (535) T protein:vir:10 13 LSNKKSTSYIELGDYDKDIVNKAIRPGRASARDTVDGIDIADGNVAGQYSVASISDVLSTKKLLKAYADNDIVQAIIRTR 92 (535) T ss_pred hhhhhhhhhHHHhhhhHHHHHhhhhhhhhhhhccccccccccCCcccccccCccccccCHHHHHHHhccChhHHHHHHHH Confidence 4443322111000 0000000 000 000 01222 123 Q ss_pred ccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhhhhHHHhcccCCCCCHHHHH-----HHHHHHHhc- Q lcl|Aclame:pro 35 LDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFS-----RFVLDFLVF- 108 (344) Q Consensus 35 ~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~-----~~~~~~ll~- 108 (344) ....++|+|+.+++... ...|+.+++..... ..+... ....-..++..+||++++.+.|+ .++.+++++ T Consensus 93 ~~~va~~~~i~~~s~~~-~~~~i~l~~~~~~~---~~~~~~-~~~~l~~lL~~~PN~~~~~~~~~~~~~~~lv~d~l~~~ 167 (535) T protein:vir:10 93 TNQVLTYSNPSRYNRNG-VGFKVELKDATKVM---SKAQIK-RAHEIEDFIYNTGSEYYEWRDTFPRLLTKIINDMYVQD 167 (535) T ss_pred HHHHHHHHHHHHHhccc-CcceeEEEeccCCC---cchhhh-hhhHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHhhC Confidence 34567788888776554 46677664322110 000000 00011235667899999876533 344566655 Q ss_pred CCeEEEEEECCCCceEEEEEecCcceeccccC------ceEEEEcCCceEEEEecccEEEecCCCC---CCCccccccch Q lcl|Aclame:pro 109 GNAFLEKRYSTTGKVIRLETSPAKYTRRGVEE------DVYWWVPSFNEPTAFAPGSVFHLLEPDI---NQELYGLPEYL 179 (344) Q Consensus 109 Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~------~~~y~~~~~~~~~~~~~~eViH~r~~~~---~~~~~G~sp~~ 179 (344) ||+|++|+|+..|+|++|+||+|.+|++..+. ..||++.+++....|+++||||+|.++. .++++|+||+. T Consensus 168 g~ay~~i~r~~~G~~~~L~~l~p~~V~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~eiih~~~~~~~~~~~~~~G~Spi~ 247 (535) T protein:vir:10 168 QINIERIFKNDSNELDHFNAVDASKVVISYSPRSKDQPRKFEQFVSETKSVKFSERNLTFINYWNLSDTDRRGYGYSPVE 247 (535) T ss_pred CceEEEEEECCCCcEEEEEEeCCceeEEEEcCccccCceEEEEEecCceeEEECcccEEEEeccCCCCcccccccccHHH Confidence 68999999999999999999999999876442 2467777778888999999999997543 34778999999 Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCC---CCCCHHHHHHHHHHHHH-hhccccccccccccCCCccccceee Q lcl|Aclame:pro 180 SALNSAWLNESATLFRRKYYENGAHAGYIMYVTD---AVQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKII 255 (344) Q Consensus 180 ~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~---~~l~~e~~~~lk~~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~ 255 (344) +++.+|.++.++++|+.++|+||++|+|||++++ +.+++++++++++.|++ +.|.+|+++++|+.+ +|++|+ T Consensus 248 ~~~~~i~~~~aa~~~~~~~f~ng~~p~giL~~~~~~~~~ls~e~~e~lk~~~~~~~~G~~nag~~~vl~~----~g~~~~ 323 (535) T protein:vir:10 248 ASIPLIRAIYDTEQFNARFFSQGGTTRGILVIDQDGDAQANQMMLAGIRRQWTSQGSGLGGAWKIPILAA----KDAKFV 323 (535) T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccEEEEecCCCCcccCHHHHHHHHHHHHHHhcCcccccccccccC----CCceEE Confidence 9999999999999999999999999999999874 45899999999999976 678899999988753 589999 Q ss_pred ecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccc----------cccccHHHHHHHHHHHHHHHHHHHHH-HHH Q lcl|Aclame:pro 256 PLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENV----------GSLGDIEKVAKVFVRNELIPLQDRIR-EIN 324 (344) Q Consensus 256 pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~----------~~~~n~e~~~~~f~~~~l~P~~~~ie-eln 324 (344) +++++++|+||+|++++++++||++|||||++||+.++.+ .+++++|++...|+++||+||++.|| +|| T Consensus 324 ~l~~~~~D~qfle~~~~~~~eIa~afgVPp~~lG~~~~at~sn~~~~~~~~~~s~~E~~~~~~~~~~L~P~l~~ie~~ln 403 (535) T protein:vir:10 324 NMTQNSRDMEFDKFLNFMIYDTAAIFQMQPEEINFPNNGGSTGKSGTKSVNEGSTAKAKLESSKDKGLTPLLSFIEQVIN 403 (535) T ss_pred ecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 9999999999999999999999999999999999865421 23456788899999999999999999 799 Q ss_pred HhhCCcceeccccccCCCCC Q lcl|Aclame:pro 325 GWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 325 ~~L~~~~~~f~~y~l~~~~~ 344 (344) ++|..+.-. .|+|+|+.- T Consensus 404 ~~Ll~~~~~--~~~f~f~~l 421 (535) T protein:vir:10 404 DKIMRYVDT--DYRFSFTLG 421 (535) T ss_pred hhcccccCC--eEEEEeccc Confidence 999765321 234444432 No 73 >protein:vir:3153 Length: 467 # NCBI annotation: capsid protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665924;genbank:gi:22091110;genbank:GeneID:951257 Probab=100.00 E-value=2.3e-60 Score=347.50 Aligned_cols=311 Identities=13% Similarity=0.117 Sum_probs=238.7 Q ss_pred CccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhhhhHHHhcccCCCCCH--------HHHH-H Q lcl|Aclame:pro 30 EPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKRNILASTFIPHPWLSQ--------QDFS-R 100 (344) Q Consensus 30 ~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~pn~~~~~--------~~f~-~ 100 (344) =-.-+-.+++|++||.++++..+ .+|+.++...........+ ....+....++...||+.+++ ..|+ . T Consensus 1 l~~l~~~n~~v~~ci~~ia~~ia-~~p~~i~~~~~~~~~~~~~--~~~~~~~~~l~~~~pn~~~~~~~~~~~t~~~~~~~ 77 (467) T protein:vir:31 1 MAELLEHNETHAKCVHAKSRYVA-GFGINIIPHPEAEDPDRDG--EQYERVWDFWFGDDSNWQVGPMESERATATNVLQT 77 (467) T ss_pred ChhhhhcCHHHHHHHHHHHHhhh-cCCeEEEEccCcccccchh--hhhhhHHHHhhccCCCccccchhhHhhHHHHHHHH Confidence 00111225789999999887754 7788764322111111111 122222234555567765543 3444 4 Q ss_pred HHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCceEEEE--------------------------------cC Q lcl|Aclame:pro 101 FVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWV--------------------------------PS 148 (344) Q Consensus 101 ~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~y~~--------------------------------~~ 148 (344) ++.+++++||+|++++|+..|+|++|+||++.+|++..+...|+.. .. T Consensus 78 ~~~~l~l~Gn~~i~~~r~~~G~~~~l~~l~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (467) T protein:vir:31 78 AWTDYEAIGWLTIEILTQTDGTPTGLAYVPGHTIRKRMDERGFVQLLEEKEKYFGVAGDRYQTNGNGDLDPVFVDADDGS 157 (467) T ss_pred HHHHHHhcCCeEEEEEECCCCcEEEEEEeCCceeEeeeecceeEeecCCceeeEEeccccceeecccceeeeeeeecccc Confidence 6679999999999999999999999999999999887665432111 01 Q ss_pred CceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 149 FNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENM 228 (344) Q Consensus 149 ~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~ 228 (344) .+..+.++++||||+|.+++.++++|+||+.+++.++.++.++++|++++|+||++|+|||+++++.+++++.+++++.| T Consensus 158 ~~~~~~~~~~diih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~~~~~~ 237 (467) T protein:vir:31 158 TGTSVSNPANELIFKRNHSPLYPHYGAPDIIPAVKTIRGDSAAQDYNIDFFENDGVPRIAIIVKGAELTEKGREEMRNLI 237 (467) T ss_pred ccceeEeccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHHHHHHHHHHH Confidence 24456789999999999988899999999999999999999999999999999999999999988889999999999999 Q ss_pred HHhh------------ccccccccccccCCCc--cccceeeeccc-chhHHHHHHHHhhhHHHHHHHhcCCHHHhccccc Q lcl|Aclame:pro 229 VKSK------------GRNNFKNLFLYAPQGK--ADGIKIIPLSE-VATKDDFFNIKKASAADLLDAHRIPFQLMGGKPE 293 (344) Q Consensus 229 ~~~~------------g~~n~~~~~vl~~~~~--~~gl~~~pl~~-~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~ 293 (344) +... |..|+++++++..+.+ ..+++++|++. +++|+||+|++++++++||++|||||++||+.++ T Consensus 238 ~~~~~~~~~~~~~~~~g~~n~~~~~~l~~g~~~~~~~~~~~~ls~~~~~d~qf~e~~~~~~~~Ia~~fgVpp~~lG~~~~ 317 (467) T protein:vir:31 238 EDNNEDNHRTAFIETEKIVQNEDYLNLADGADRSDVEIRLEPLTVGIDEEASFLEFRGRNEHDILKVHDVPPVIAGVVES 317 (467) T ss_pred HhhhcchhhhhhhhhcccccccccccccCCCcccccceeEEeccccChhhHHHHHHHHHHHHHHHHHhCCCHHHcccCCC Confidence 7532 5678999999987764 45778888875 6789999999999999999999999999998643 Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 294 NVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 294 ~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) +++++|+|++...|+++||+|+++.|| +||++|.....+...|.++|+-. T Consensus 318 -~~~~s~~e~~~~~f~~~~l~P~~~~ie~~ln~~l~~~~~~~~~~~i~f~~~ 368 (467) T protein:vir:31 318 -GAFSTDAEEQRKEFAEETIQPKQHDFGELLYELVHKQGLDAPDWTIEFELA 368 (467) T ss_pred -CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhccCCceEEEecc Confidence 345689999999999999999999998 69999977554434443333322 No 74 >protein:vir:4828 Length: 382 # NCBI annotation: ORF24 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID:1262630 Probab=100.00 E-value=3.2e-60 Score=346.75 Aligned_cols=313 Identities=11% Similarity=0.070 Sum_probs=240.3 Q ss_pred CCCCCCCCCCCchhhcccc---ccceEEEE----cCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTAS---APKMEAFT----FGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHS 73 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~---~~~~~~~~----~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~ 73 (344) |+--++...+......... .+.....+ .-.++.+|.+++|++||.+|++.. .++|+.+++.. T Consensus 1 Mg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~v~~~i~~ia~~i-a~~~~~~~~~~---------- 69 (382) T protein:vir:48 1 MPIFNLATESPPDNQGGFFDVVDSDFLASLKGNEWVSAETALRNSDLFSIINQLSNDL-ATVKLITSRKK---------- 69 (382) T ss_pred CccccccccCCcccccccccchhhhccccccCCcccchHhhhccHHHHHHHHHHHHhh-ccCceeeecch---------- Confidence 5533222221111110000 01111111 123457889999999999998765 47888765321 Q ss_pred hhhhhhhhhHHHhcccCCCCCHHHHHHHH-HHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---eEEEEcCC Q lcl|Aclame:pro 74 SPIYVKRNILASTFIPHPWLSQQDFSRFV-LDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---VYWWVPSF 149 (344) Q Consensus 74 ~~i~~~~~~~~~~~~pn~~~~~~~f~~~~-~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---~~y~~~~~ 149 (344) ...+..+||++++++.|++.+ .+++++||||++++|+..|++++|+|++|.+|++..+.+ .+|.+..+ T Consensus 70 --------~~~L~~~PN~~~t~~~f~~~l~~~l~l~Gna~~~i~rd~~G~~~~l~~i~~~~v~v~~~~~~~~~~y~~~~~ 141 (382) T protein:vir:48 70 --------LQGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNKDGIYYNITFD 141 (382) T ss_pred --------hhhhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCCeEEEEEEec Confidence 123456799999999998755 588999999999999999999999999999998765432 35655432 Q ss_pred ----ceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHH Q lcl|Aclame:pro 150 ----NEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLR 225 (344) Q Consensus 150 ----~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk 225 (344) +..+.|+++||||+|.+++.+.++|+||+.++..+++++.++++|..++|+||++|+|||++++ .+++|+.++++ T Consensus 142 ~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~-~~~~e~~~~~~ 220 (382) T protein:vir:48 142 DPRIPPKQHVPQNDVLHFRLLSVDGGMTSVSPLMALSRELDIQKASGNLTINSLKNALNANGILKIKG-GGLLDFKTKLS 220 (382) T ss_pred CccccceeEEcCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCC-CCChHHHHHHH Confidence 4567899999999999988777999999999999999999999999999999999999999875 57888888888 Q ss_pred HHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHH Q lcl|Aclame:pro 226 ENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVA 305 (344) Q Consensus 226 ~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~ 305 (344) +.|.. +..|+|+++|+ +.|++|+|++.+++|+||+|++++++++||++|||||.+||+.. +.++.+++. T Consensus 221 ~~~~~--~~~n~g~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVp~~~lg~~~----~~~~~~~~~ 289 (382) T protein:vir:48 221 RSRQA--MKQMQGGPLVL-----DDLEDFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPDNVVGGQG----DQQSSLEMS 289 (382) T ss_pred HHHHh--hccCCCCeeEc-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC----CcccHHHHH Confidence 88865 44688999999 45889999999999999999999999999999999999999742 234678889 Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 306 KVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 306 ~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) ..|+++||.|+++.|+ ++|++|+.+........++.+.- T Consensus 290 ~~~~~~~l~p~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~ 329 (382) T protein:vir:48 290 SDLYSKAVSRYLRPFLSELSQKLSCDVDADIFPAVDPTGS 329 (382) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhccchh Confidence 9999999999999998 79999987643222223333322 No 75 >protein:vir:100882 Length: 383 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Probab=100.00 E-value=4e-60 Score=346.20 Aligned_cols=315 Identities=13% Similarity=0.118 Sum_probs=245.3 Q ss_pred CCCCCCCCCCCchhhccc-cccc-----eEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTA-SAPK-----MEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSS 74 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~ 74 (344) |+++..++.......... .... ...-.+-++..+|.+++|++||.+|+++.+ ++|+.+++.. T Consensus 4 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~v~~~i~~ia~~ia-~~~~~~~~~~----------- 71 (383) T protein:vir:10 4 LTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVS-SAHFKTENTA----------- 71 (383) T ss_pred ccccccccccccccccccchhhhhhhccCccccccchhHhhcchHHHHHHHHHHHhhc-cCceeecccc----------- Confidence 554322222221111110 0100 011122346788999999999999987654 7787653210 Q ss_pred hhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCce-EEE--EcCCc Q lcl|Aclame:pro 75 PIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV-YWW--VPSFN 150 (344) Q Consensus 75 ~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~-~y~--~~~~~ 150 (344) ..-+..+||++++.+.|++. +.+++++||+|++++|+ +.+++|+++.+|+...+.+. +|. ...++ T Consensus 72 -------~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~~~----~~~~~p~~~~~v~~~~~~~~~~~~~~~~~~~ 140 (383) T protein:vir:10 72 -------TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ----NLEHIPNSDVQINYLPGNMGIVYTVLESNDR 140 (383) T ss_pred -------hhhhhhCCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcC----ceeEeecCcceEEEEEcCCceEEEEEEcCCc Confidence 11122379999999999765 56888999999999875 56789999998887665543 333 34567 Q ss_pred eEEEEecccEEEecCCCC--CCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 151 EPTAFAPGSVFHLLEPDI--NQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENM 228 (344) Q Consensus 151 ~~~~~~~~eViH~r~~~~--~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~ 228 (344) ..++|+++||||+|.+++ .++++|+||+.++..++..+.++++++.++|+||++|+|+|++++...++++.+++++.| T Consensus 141 ~~~~~~~~evih~r~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~~~~e~~~~~~~~~ 220 (383) T protein:vir:10 141 PKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEF 220 (383) T ss_pred eEEEEcccceEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHH Confidence 788999999999997643 467899999999999999999999999999999999999999987777899999999999 Q ss_pred HHhhccccccccccccCCCccccceeeecccchhHHHHH-HHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHH Q lcl|Aclame:pro 229 VKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFF-NIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKV 307 (344) Q Consensus 229 ~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~-e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~ 307 (344) ++..+++|+++++++ ++|++|++++.+++|+|++ |++++++++||++|||||++||+...++++++|+|+++.. T Consensus 221 ~~~~~~~n~~~~~vl-----~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~~~sn~eq~~~~ 295 (383) T protein:vir:10 221 EKANTGDNSGRLMVL-----PDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKAT 295 (383) T ss_pred HHHhCccccCCcccc-----CCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCCccccHHHHHHH Confidence 988878999999999 4688999999999999985 9999999999999999999999876677889999999775 Q ss_pred HHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 308 FVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 308 f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) |. .||.|+++.|| ++|++|+...++|+.-.+...|- T Consensus 296 ~~-~~l~P~~~~ie~~l~~~l~~~~~~f~~~~l~~~d~ 332 (383) T protein:vir:10 296 YL-ANLNSYVNPIVDELRLKMNAPDLELDIKDMLDVDD 332 (383) T ss_pred HH-HHHHHHHHHHHHHHHHhhCCceEEeechhhhccCH Confidence 55 69999999998 69999988778877665554444 No 76 >protein:vir:3989 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116497;genbank:gi:14251130;genbank:GeneID:921299 Probab=100.00 E-value=3.2e-60 Score=346.78 Aligned_cols=312 Identities=11% Similarity=0.046 Sum_probs=231.1 Q ss_pred CC---CCCCCCCCCchhhccccc--cce----EEE-----EcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHh Q lcl|Aclame:pro 1 MS---KKKGKTLQPAAKKMTASA--PKM----EAF-----TFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSL 66 (344) Q Consensus 1 ms---k~~~~~~~~~~~~~~~~~--~~~----~~~-----~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~ 66 (344) |+ +.++...++......... ... +.+ ..-++..+|.+++|++||.+|+++.+ ++|+.+++.. T Consensus 3 m~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia-~lp~~~~~~~--- 78 (392) T protein:vir:39 3 LPILNFINQTNDPPEVGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLA-IVKINAEKKK--- 78 (392) T ss_pred chhhhhhhcccccccccccccccccCchhhhhhhhcCCCCceechHHhhccHHHHHHHHHHHHhhc-cCceeeccch--- Confidence 32 222211111111111100 000 000 01246778999999999999987755 7888764321 Q ss_pred hcchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---e Q lcl|Aclame:pro 67 RAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---V 142 (344) Q Consensus 67 ~~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---~ 142 (344) ...+..+||++++.+.|++. +.+++++||||++++|+..|++++|+|+++.+|++..+.+ . T Consensus 79 ---------------~~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~~~~~~~~ 143 (392) T protein:vir:39 79 ---------------NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGM 143 (392) T ss_pred ---------------hhhHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceE Confidence 12244589999999999875 4588999999999999999999999999999998775432 3 Q ss_pred EEEEcC----CceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCC-CC Q lcl|Aclame:pro 143 YWWVPS----FNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAV-QD 217 (344) Q Consensus 143 ~y~~~~----~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~-l~ 217 (344) +|.+.. ++....|+++||||+|.+++.+.++|+||+.++..+++++.++++|+.++|+||++|+|+|++++.. .+ T Consensus 144 ~y~~~~~~~~~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~ 223 (392) T protein:vir:39 144 YYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLS 223 (392) T ss_pred EEEEEecCcccceeEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCch Confidence 555543 2345789999999999988776789999999999999999999999999999999999999997643 33 Q ss_pred HHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccc Q lcl|Aclame:pro 218 RNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGS 297 (344) Q Consensus 218 ~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~ 297 (344) ++++++++ +++.|..|+++++|| +.|++|++++.+++|+||+|++++++++||++|||||++||+... T Consensus 224 ~~~~~~~~---~~~~~~~~~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~---- 291 (392) T protein:vir:39 224 DKDKASRS---RSFMKRSRSGGPVVL-----DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGD---- 291 (392) T ss_pred HHHHHHHH---HHHhccccCCCeeec-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC---- Confidence 33333333 345677899999999 458899999999999999999999999999999999999997432 Q ss_pred cccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 298 LGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 298 ~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) .++.+++.+.|+++||.|+++.|| ++|++|+.+ +.|+...+...+. T Consensus 292 ~~~~~~~~~~f~~~~l~P~~~~ie~~l~~~L~~~-~~~d~~~~~~~d~ 338 (392) T protein:vir:39 292 QQSSIQQISGMYASALNRYLRPAISELEYKLSDH-ISVNMRPAIDPLG 338 (392) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-ccccchhhhccCH Confidence 224467789999999999999998 799999875 3443322222222 No 77 >protein:vir:1023 Length: 392 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076677;genbank:gi:13095786;genbank:GeneID:920364 Probab=100.00 E-value=3.2e-60 Score=346.78 Aligned_cols=312 Identities=11% Similarity=0.046 Sum_probs=231.1 Q ss_pred CC---CCCCCCCCCchhhccccc--cce----EEE-----EcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHh Q lcl|Aclame:pro 1 MS---KKKGKTLQPAAKKMTASA--PKM----EAF-----TFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSL 66 (344) Q Consensus 1 ms---k~~~~~~~~~~~~~~~~~--~~~----~~~-----~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~ 66 (344) |+ +.++...++......... ... +.+ ..-++..+|.+++|++||.+|+++.+ ++|+.+++.. T Consensus 3 m~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia-~lp~~~~~~~--- 78 (392) T protein:vir:10 3 LPILNFINQTNDPPEVGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLA-IVKINAEKKK--- 78 (392) T ss_pred chhhhhhhcccccccccccccccccCchhhhhhhhcCCCCceechHHhhccHHHHHHHHHHHHhhc-cCceeeccch--- Confidence 32 222211111111111100 000 000 01246778999999999999987755 7888764321 Q ss_pred hcchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---e Q lcl|Aclame:pro 67 RAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---V 142 (344) Q Consensus 67 ~~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---~ 142 (344) ...+..+||++++.+.|++. +.+++++||||++++|+..|++++|+|+++.+|++..+.+ . T Consensus 79 ---------------~~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~~~~~~~~ 143 (392) T protein:vir:10 79 ---------------NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGM 143 (392) T ss_pred ---------------hhhHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceE Confidence 12244589999999999875 4588999999999999999999999999999998775432 3 Q ss_pred EEEEcC----CceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCC-CC Q lcl|Aclame:pro 143 YWWVPS----FNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAV-QD 217 (344) Q Consensus 143 ~y~~~~----~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~-l~ 217 (344) +|.+.. ++....|+++||||+|.+++.+.++|+||+.++..+++++.++++|+.++|+||++|+|+|++++.. .+ T Consensus 144 ~y~~~~~~~~~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~ 223 (392) T protein:vir:10 144 YYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLS 223 (392) T ss_pred EEEEEecCcccceeEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCch Confidence 555543 2345789999999999988776789999999999999999999999999999999999999997643 33 Q ss_pred HHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccc Q lcl|Aclame:pro 218 RNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGS 297 (344) Q Consensus 218 ~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~ 297 (344) ++++++++ +++.|..|+++++|| +.|++|++++.+++|+||+|++++++++||++|||||++||+... T Consensus 224 ~~~~~~~~---~~~~~~~~~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~---- 291 (392) T protein:vir:10 224 DKDKASRS---RSFMKRSRSGGPVVL-----DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGD---- 291 (392) T ss_pred HHHHHHHH---HHHhccccCCCeeec-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC---- Confidence 33333333 345677899999999 458899999999999999999999999999999999999997432 Q ss_pred cccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 298 LGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 298 ~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) .++.+++.+.|+++||.|+++.|| ++|++|+.+ +.|+...+...+. T Consensus 292 ~~~~~~~~~~f~~~~l~P~~~~ie~~l~~~L~~~-~~~d~~~~~~~d~ 338 (392) T protein:vir:10 292 QQSSIQQISGMYASALNRYLRPAISELEYKLSDH-ISVNMRPAIDPLG 338 (392) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-ccccchhhhccCH Confidence 224467789999999999999998 799999875 3443322222222 No 78 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=100.00 E-value=3.2e-60 Score=346.72 Aligned_cols=317 Identities=11% Similarity=0.110 Sum_probs=240.9 Q ss_pred CCC---CCCCCCCCchhhccccccceE-EE------EcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcch Q lcl|Aclame:pro 1 MSK---KKGKTLQPAAKKMTASAPKME-AF------TFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAV 70 (344) Q Consensus 1 msk---~~~~~~~~~~~~~~~~~~~~~-~~------~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 70 (344) |.- +.+.+.++............+ .+ ..-++.++|.+++|++||..|+++.+ ++|+.+++.. T Consensus 1 Mglf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~V~~~i~~Ia~~ia-~l~~~~~~~~------- 72 (384) T protein:vir:49 1 MPIFNITNLATESPPSNQDSFFDITDPEFLDALNGSEWVSAETALKNSDLFSIISQLSNDLA-TAKITTSRKQ------- 72 (384) T ss_pred CccccccccCcccccccchhhccccchhhcccccCCceechhhhhccHHHHHHHHHHHHHHh-hCceeeecch------- Confidence 553 322222222211111100000 01 11245677899999999999987655 8888764311 Q ss_pred hhhhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---eEEEE Q lcl|Aclame:pro 71 HHSSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---VYWWV 146 (344) Q Consensus 71 ~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---~~y~~ 146 (344) ...+..+||++++++.|++. +.+++++||+|++++|+..|++++|+|++|.+|++..+.+ .+|.+ T Consensus 73 -----------~~~l~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~~~~~~~~~y~~ 141 (384) T protein:vir:49 73 -----------LQGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNQNGLYYNI 141 (384) T ss_pred -----------hhhhhhccCCCCCHHHHHHHHHHHhhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEE Confidence 12245579999999999875 5688999999999999999999999999999998765432 35555 Q ss_pred cC----CceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHH Q lcl|Aclame:pro 147 PS----FNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIE 222 (344) Q Consensus 147 ~~----~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~ 222 (344) .. .+..++|+++||||+|.+++.++++|+||+.++..+++++.+++++..++|+||++|+|||++++... +++.. T Consensus 142 ~~~~~~~~~~~~~~~~eVih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~-~~~~~ 220 (384) T protein:vir:49 142 TFDDPRIPPKQHVPQGDILHFRLLSVDGGLTSVSPLMALGRELNIQKASDKLTLNALKNALNANGILKIKGGGL-LDFKT 220 (384) T ss_pred EecCccccceeEecCccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCC-hHHHH Confidence 42 34567899999999999888777999999999999999999999999999999999999999987544 44332 Q ss_pred HHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHH Q lcl|Aclame:pro 223 MLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIE 302 (344) Q Consensus 223 ~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e 302 (344) ++.++.+.|.+|++++++| ++|++|++++++++|+||+|++++++++||++|||||++||+...+.+++++++ T Consensus 221 --~~~~~~~~~~~n~~~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~~ 293 (384) T protein:vir:49 221 --KQSRSRQAMKQMQGGPLVL-----DDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESVVGGEGDKQSSLEMIY 293 (384) T ss_pred --HHHHHHHhcccCCccceec-----CCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccccHHHHH Confidence 3344556788999999999 458899999999999999999999999999999999999998766778889999 Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhCCcc---eeccccccCCCCC Q lcl|Aclame:pro 303 KVAKVFVRNELIPLQDRIR-EINGWLGQEV---IRFKNYSLDTDNG 344 (344) Q Consensus 303 ~~~~~f~~~~l~P~~~~ie-eln~~L~~~~---~~f~~y~l~~~~~ 344 (344) ++...|++.+|.||++.|+ +|+.+|+.+. ++.+.+.++++=. T Consensus 294 ~~~~~~i~~~l~pi~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 339 (384) T protein:vir:49 294 NIYFKAVSRFLRPFVSELSKKLSCEVDADILPAVDPTGSNYIGLIN 339 (384) T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhhhhccchHHHHHHH Confidence 9999999999999999998 6888875432 2222232322111 No 79 >protein:vir:99452 Length: 651 # NCBI annotation: hypothetical protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919077;genbank:gi:119757035;genbank:GeneID:4606105 Probab=100.00 E-value=5.4e-60 Score=345.51 Aligned_cols=332 Identities=15% Similarity=0.178 Sum_probs=254.3 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) ||-.|+...+...++ .++++.+.+--.|++-.-..+-+ -....+++||+.+..|.++.+.++.|.+||..++ T Consensus 1 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~p~~~~~~L~~~~e~~~~~~~~i~~~~ 72 (651) T protein:vir:99 1 MTDTTGETQETKVHV---EGLGGEADLAKSPNSTQIPDHRI-----QSHNVGVNPPYNPDRLAAFLELNETLATGIRKKS 72 (651) T ss_pred CCCccceeeeeEEEe---ecccccccccccccccccchhhh-----cccCCCCCCCCCHHHHHHHHhcChHHHHHHHHHh Confidence 998886655554442 22333333333333332111111 2344578999999999999999999999999888 Q ss_pred hhHHHhc--------------------------------------ccCCCCCHHHHH-HHHHHHHhcCCeEEEEEECCCC Q lcl|Aclame:pro 81 NILASTF--------------------------------------IPHPWLSQQDFS-RFVLDFLVFGNAFLEKRYSTTG 121 (344) Q Consensus 81 ~~~~~~~--------------------------------------~pn~~~~~~~f~-~~~~~~ll~Gnay~~i~r~~~G 121 (344) +..+... ..|..++...+. .++.|++.+||+|++++|+..| T Consensus 73 ~~iag~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~~t~~~i~~~~~~Dle~tGna~ieiIrn~~g 152 (651) T protein:vir:99 73 RYEVGFGFDLVPAQGVDGDDASDAQREVARNFWRGRSSRWQTGPNQAKTPATPERVKELARQDYHGVGWLALEMLTDIEG 152 (651) T ss_pred hhhhccCceeeecccCCCCccchHHHHHHHHHhhccchhhcccccccCCCCCHHHHHHHHHHHHHHHhhHhhhhhhcCcc Confidence 7655421 124445655554 5667999999999999999999 Q ss_pred ceEEEEEecCcceeccccCc----------------------------------eEE----------------------- Q lcl|Aclame:pro 122 KVIRLETSPAKYTRRGVEED----------------------------------VYW----------------------- 144 (344) Q Consensus 122 ~~~~L~pl~~~~v~~~~~~~----------------------------------~~y----------------------- 144 (344) +|++|+++++..++...+.. .|+ T Consensus 153 ~pv~L~~lp~~~~Rv~~~~~~~~~~~~~ll~~~pn~~~~~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~ 232 (651) T protein:vir:99 153 RPVGLAYVPARTVRVRRPQNRFDQPRHPEEGRYVDGDVADIASRGYVQIRNGNRRYFGEAGDRYRGQEVVIDESGDEPTI 232 (651) T ss_pred chhhhhhcChhheeeecccccccchhhhhhhcccccccchhHHHHHHHHHhcCcceEEEeeccccceeeeeccCCcceeE Confidence 99999999998765432110 000 Q ss_pred ----------------------EEcCCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 145 ----------------------WVPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENG 202 (344) Q Consensus 145 ----------------------~~~~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng 202 (344) ...+.+...+++++||||||.+++.++++|+||+..++.++.++.++++|+.++|+|| T Consensus 233 ~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~eViHir~~~~~~g~~G~spl~~a~~~i~~a~~a~~~~~~~f~NG 312 (651) T protein:vir:99 233 RYREDEESEREPIFVDRETGDVTTGDANGLENRPANELIFIPNPSILEDDYGVPDWVSAIRTISADEAAKDYNRDFFDND 312 (651) T ss_pred EeccCcceeeeeecccceeeeEEEcCCCceeEecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 0111122345788999999999888999999999999999999999999999999999 Q ss_pred CCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCC------ccccceeeecccch-hHHHHHHHHhhhHH Q lcl|Aclame:pro 203 AHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQG------KADGIKIIPLSEVA-TKDDFFNIKKASAA 275 (344) Q Consensus 203 ~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~------~~~gl~~~pl~~~~-~d~q~~e~~~~~~~ 275 (344) ++|+|||+++++.+++++++++++.|++.. +|+|+++||+.++ .+.|++|+|+++++ +|+||+|+++++++ T Consensus 313 ~~p~gil~~~~~~ls~e~~~~lr~~~~~~~--~nagk~~vL~~~~~~~~~~~~~g~~~~pls~~~~~D~qfle~r~~~~~ 390 (651) T protein:vir:99 313 TIPRMVIKVTGGELSEESKRDLRQMLNGLR--EESHRAVVLEVEKFQSQLDEDVEIELEPMGQGISEEMDFRQFREKNEH 390 (651) T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHHHh--ccCCceEEeecccccccccccCCceEEEcCcCchhhHHHHHHHHHHHH Confidence 999999999988899999999999998755 4789999987532 23599999999986 59999999999999 Q ss_pred HHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccc--cccCCCCC Q lcl|Aclame:pro 276 DLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKN--YSLDTDNG 344 (344) Q Consensus 276 ~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~--y~l~~~~~ 344 (344) +||++|||||++||+.+ .++++|+|++.+.|+++||+|++++|| +||++|.++..+... +.++|+.- T Consensus 391 eIa~afgVPp~~lG~~~--~~~~sn~E~~~~~f~~~tL~P~~~~ie~eln~kLl~~~e~~~~~~i~~ef~~~ 460 (651) T protein:vir:99 391 EIAKVLEVPPVKIGVTD--SANRSNSDQQDKDFALEVIQPEQHTFAEWLYQIIHQQALGVTDWTIEYELRGA 460 (651) T ss_pred HHHHHhCCCHHHhccCC--CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccCceEEEEeccc Confidence 99999999999999864 478999999999999999999999999 699999876443322 23333332 No 80 >protein:vir:95599 Length: 563 # NCBI annotation: ORF014 # Family: family:all:2446 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240900;genbank:gi:66394963;genbank:GeneID:5132540 Probab=100.00 E-value=6.6e-59 Score=339.57 Aligned_cols=333 Identities=15% Similarity=0.114 Sum_probs=228.9 Q ss_pred CCCCCCCCCCCchhhccccccceEEE----EcCC-cc------ccccchh-HHHHhhhhhcCccee------------cc Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAF----TFGE-PV------PVLDRRD-ILDYVECISNGRWYE------------PP 56 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~----~~~~-p~------~~~~~~~-v~~~~~~~~~~~~~~------------~p 56 (344) -+|.+.++..+.+.......+....| +.-. |. ..+..++ +-+||+++++..+.- .| T Consensus 46 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA~~~~~~~~~~~~~~~~ 125 (563) T protein:vir:95 46 LTKSLYGQQQAYAEPFIEMMDTNPEFRDKRSYMKNEHNLHDVLKKFGNNPILNAIILTRSNQVAMYCQPARYSEKGLGFE 125 (563) T ss_pred HHhhhccCCCcchhhhHhhhcccccccccccCCCCcccHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhhhhcccccce Confidence 33322222211111111111111111 1111 21 1222334 468888776654421 22 Q ss_pred ccHHHHHHHhhcch-hhhhhhhhhhhhHHHhcc--cCC-CCCHHHHH-HHHHHHHhcCCeEEEEE--ECCCCceEEEEEe Q lcl|Aclame:pro 57 ISFTGLAKSLRAAV-HHSSPIYVKRNILASTFI--PHP-WLSQQDFS-RFVLDFLVFGNAFLEKR--YSTTGKVIRLETS 129 (344) Q Consensus 57 ~~~~~l~~~~~~~~-~~~~~i~~~~~~~~~~~~--pn~-~~~~~~f~-~~~~~~ll~Gnay~~i~--r~~~G~~~~L~pl 129 (344) +.++... ..+ .....-.......+.... +++ ++++.+|+ .++.+++++||+|++++ |++.|+|++|+|+ T Consensus 126 i~l~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~G~~~~L~pl 201 (563) T protein:vir:95 126 VRLRDLD----AEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNKTKLEKFIAV 201 (563) T ss_pred eEEeecC----CCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecCCCceEEEEEe Confidence 2221110 000 000000001111222222 222 34555554 56779999999999876 8888999999999 Q ss_pred cCcceeccccCc--------eEEEEcCCceEEEEecccEEEec-CCC--CCCCccccccchhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 130 PAKYTRRGVEED--------VYWWVPSFNEPTAFAPGSVFHLL-EPD--INQELYGLPEYLSALNSAWLNESATLFRRKY 198 (344) Q Consensus 130 ~~~~v~~~~~~~--------~~y~~~~~~~~~~~~~~eViH~r-~~~--~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~ 198 (344) +|.+|++..+.+ .|+++..++....|.++||||++ .+. +..++||+||+.+++.+|.++.++++|+.+| T Consensus 202 ~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~~evI~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~~~~~~ 281 (563) T protein:vir:95 202 DPSTIFYATDKKGKIIKGGKRFVQVVDKRVVASFTSRELAMGIRNPRTELSSSGYGLSEVEIAMKEFIAYNNTESFNDRF 281 (563) T ss_pred CCceeEEEECCCCceeccceeEEEEeCCceeEEecCcceEEEeccCCCCcccCcccchHHHHHHHHHHHHHHHHHHHHHH Confidence 999999875544 24555666777789999987654 443 2347899999999999999999999999999 Q ss_pred HHhcCCCceEEEeCC-CCCCHHHHHHHHHHHHH-hhcccccccc-ccccCCCccccceeeecccchhHHHHHHHHhhhHH Q lcl|Aclame:pro 199 YENGAHAGYIMYVTD-AVQDRNDIEMLRENMVK-SKGRNNFKNL-FLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAA 275 (344) Q Consensus 199 f~ng~~p~gil~~~~-~~l~~e~~~~lk~~~~~-~~g~~n~~~~-~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~ 275 (344) |+||++|+|||++++ ..+++|+++++++.|++ +.|.+|+|++ +|+ ++|++|+|++++++|+||+|+++++++ T Consensus 282 f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl-----~~G~~~~~l~~~~~d~qfle~~~~~~~ 356 (563) T protein:vir:95 282 FSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSGINGSWQIPVVM-----ADDIKFVNMTPTANDMQFEKWLNYLIN 356 (563) T ss_pred HHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceEEc-----CCCceEEeccCChhHHHHHHHHHHHHH Confidence 999999999999875 35899999999999976 6778999997 566 468999999999999999999999999 Q ss_pred HHHHHhcCCHHHhccccccc---------cccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 276 DLLDAHRIPFQLMGGKPENV---------GSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 276 ~Ia~~fgVPp~~lg~~~~~~---------~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) +||++|||||++||+.+.++ .+++|+|++.+.|+++||+||++.|| +||++|..+.. ..|.++|+.+ T Consensus 357 ~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~~~--~~~~~~f~r~ 433 (563) T protein:vir:95 357 IISALYGIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRFIEDLVNRHIISEYG--DKYTFQFVGG 433 (563) T ss_pred HHHHHhCCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcc--cccEEEeccC Confidence 99999999999999865432 25579999999999999999999999 79999987643 3456666666 No 81 >protein:vir:99312 Length: 563 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024471;genbank:gi:48696430;genbank:GeneID:2948040 Probab=100.00 E-value=6.6e-59 Score=339.57 Aligned_cols=333 Identities=15% Similarity=0.114 Sum_probs=228.9 Q ss_pred CCCCCCCCCCCchhhccccccceEEE----EcCC-cc------ccccchh-HHHHhhhhhcCccee------------cc Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAF----TFGE-PV------PVLDRRD-ILDYVECISNGRWYE------------PP 56 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~----~~~~-p~------~~~~~~~-v~~~~~~~~~~~~~~------------~p 56 (344) -+|.+.++..+.+.......+....| +.-. |. ..+..++ +-+||+++++..+.- .| T Consensus 46 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA~~~~~~~~~~~~~~~~ 125 (563) T protein:vir:99 46 LTKSLYGQQQAYAEPFIEMMDTNPEFRDKRSYMKNEHNLHDVLKKFGNNPILNAIILTRSNQVAMYCQPARYSEKGLGFE 125 (563) T ss_pred HHhhhccCCCcchhhhHhhhcccccccccccCCCCcccHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhhhhcccccce Confidence 33322222211111111111111111 1111 21 1222334 468888776654421 22 Q ss_pred ccHHHHHHHhhcch-hhhhhhhhhhhhHHHhcc--cCC-CCCHHHHH-HHHHHHHhcCCeEEEEE--ECCCCceEEEEEe Q lcl|Aclame:pro 57 ISFTGLAKSLRAAV-HHSSPIYVKRNILASTFI--PHP-WLSQQDFS-RFVLDFLVFGNAFLEKR--YSTTGKVIRLETS 129 (344) Q Consensus 57 ~~~~~l~~~~~~~~-~~~~~i~~~~~~~~~~~~--pn~-~~~~~~f~-~~~~~~ll~Gnay~~i~--r~~~G~~~~L~pl 129 (344) +.++... ..+ .....-.......+.... +++ ++++.+|+ .++.+++++||+|++++ |++.|+|++|+|+ T Consensus 126 i~l~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~G~~~~L~pl 201 (563) T protein:vir:99 126 VRLRDLD----AEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNKTKLEKFIAV 201 (563) T ss_pred eEEeecC----CCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecCCCceEEEEEe Confidence 2221110 000 000000001111222222 222 34555554 56779999999999876 8888999999999 Q ss_pred cCcceeccccCc--------eEEEEcCCceEEEEecccEEEec-CCC--CCCCccccccchhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 130 PAKYTRRGVEED--------VYWWVPSFNEPTAFAPGSVFHLL-EPD--INQELYGLPEYLSALNSAWLNESATLFRRKY 198 (344) Q Consensus 130 ~~~~v~~~~~~~--------~~y~~~~~~~~~~~~~~eViH~r-~~~--~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~ 198 (344) +|.+|++..+.+ .|+++..++....|.++||||++ .+. +..++||+||+.+++.+|.++.++++|+.+| T Consensus 202 ~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~~evI~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~~~~~~ 281 (563) T protein:vir:99 202 DPSTIFYATDKKGKIIKGGKRFVQVVDKRVVASFTSRELAMGIRNPRTELSSSGYGLSEVEIAMKEFIAYNNTESFNDRF 281 (563) T ss_pred CCceeEEEECCCCceeccceeEEEEeCCceeEEecCcceEEEeccCCCCcccCcccchHHHHHHHHHHHHHHHHHHHHHH Confidence 999999875544 24555666777789999987654 443 2347899999999999999999999999999 Q ss_pred HHhcCCCceEEEeCC-CCCCHHHHHHHHHHHHH-hhcccccccc-ccccCCCccccceeeecccchhHHHHHHHHhhhHH Q lcl|Aclame:pro 199 YENGAHAGYIMYVTD-AVQDRNDIEMLRENMVK-SKGRNNFKNL-FLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAA 275 (344) Q Consensus 199 f~ng~~p~gil~~~~-~~l~~e~~~~lk~~~~~-~~g~~n~~~~-~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~ 275 (344) |+||++|+|||++++ ..+++|+++++++.|++ +.|.+|+|++ +|+ ++|++|+|++++++|+||+|+++++++ T Consensus 282 f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl-----~~G~~~~~l~~~~~d~qfle~~~~~~~ 356 (563) T protein:vir:99 282 FSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSGINGSWQIPVVM-----ADDIKFVNMTPTANDMQFEKWLNYLIN 356 (563) T ss_pred HHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceEEc-----CCCceEEeccCChhHHHHHHHHHHHHH Confidence 999999999999875 35899999999999976 6778999997 566 468999999999999999999999999 Q ss_pred HHHHHhcCCHHHhccccccc---------cccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 276 DLLDAHRIPFQLMGGKPENV---------GSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 276 ~Ia~~fgVPp~~lg~~~~~~---------~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) +||++|||||++||+.+.++ .+++|+|++.+.|+++||+||++.|| +||++|..+.. ..|.++|+.+ T Consensus 357 ~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~~~--~~~~~~f~r~ 433 (563) T protein:vir:99 357 IISALYGIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRFIEDLVNRHIISEYG--DKYTFQFVGG 433 (563) T ss_pred HHHHHhCCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcc--cccEEEeccC Confidence 99999999999999865432 25579999999999999999999999 79999987643 3456666666 No 82 >protein:vir:104259 Length: 403 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006980;genbank:gi:46401881;genbank:GeneID:2777676 Probab=100.00 E-value=2e-59 Score=342.44 Aligned_cols=321 Identities=15% Similarity=0.192 Sum_probs=234.6 Q ss_pred CC-CCCCCCC-CCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhh Q lcl|Aclame:pro 1 MS-KKKGKTL-QPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYV 78 (344) Q Consensus 1 ms-k~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~ 78 (344) +| .+.+..+ ..+....+...+......+..++.++.+++|++||.+|+.. +.++|+.++.-....+.. . .... T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~v~~cv~~Ia~~-ia~~p~~v~~~~~~~~~~-~---~~~~ 78 (403) T protein:vir:10 4 KSWITEKLNPGQRIIRDMEPVSHRTNRKPFTTGQAYSKIEILNRTANMVIDS-AAECSYTVGDKYNIVTYA-N---GVKT 78 (403) T ss_pred hhhhhhccchhhhhhhcccccccccCCcccccHHHHHHHHHHHHHHHHHHHH-HhhCceeEeecccccccc-c---cccc Confidence 22 1111101 11111111101111111223346678899999999999865 558888765322111110 0 0111 Q ss_pred hhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCceEEEEcCCceEEEEec Q lcl|Aclame:pro 79 KRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAP 157 (344) Q Consensus 79 ~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~y~~~~~~~~~~~~~ 157 (344) .....++..+||++++++.|++. +.+++++||||+++.+ .+|+|+++..+++..+.+..+.....+....+.+ T Consensus 79 ~~l~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gnayi~~~~------~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 152 (403) T protein:vir:10 79 KTLDTLLNVRPNPFMDISTFRRLVVTDLLFEGCAYIYWDG------TSLYHVPAALMQVEADANKFIKKFIFNNQINYRV 152 (403) T ss_pred chHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEeC------ceeEeecCcceEEEEcCCceEEEEEecCceeecc Confidence 11234667789999999999875 4588999999998753 2589999998887665544222222233457889 Q ss_pred ccEEEecCCC----CCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHH-hh Q lcl|Aclame:pro 158 GSVFHLLEPD----INQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVK-SK 232 (344) Q Consensus 158 ~eViH~r~~~----~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~-~~ 232 (344) +||||+|..+ +.++++|+||+..++++++++.++++|..++|+||++|+|||+++ +.+++++++++++.|++ +. T Consensus 153 ~eiih~~~~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~-~~l~~e~~~~~~~~~~~~~~ 231 (403) T protein:vir:10 153 DEIIFIKDNSYVCGTNSQISGQSRVATVIDSLEKRSKMLNFKEKFLDNGTVIGLILETD-EILNKKLRERKQEELQLDYN 231 (403) T ss_pred cceEEecccccccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeC-CCCCHHHHHHHHHHHHHHhC Confidence 9999999654 357899999999999999999999999999999999999999976 57999999999999976 56 Q ss_pred ccccccccccccCCCccccceeeeccc--chhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHH Q lcl|Aclame:pro 233 GRNNFKNLFLYAPQGKADGIKIIPLSE--VATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVR 310 (344) Q Consensus 233 g~~n~~~~~vl~~~~~~~gl~~~pl~~--~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~ 310 (344) |.+|+|+++||+ .|++|+|+++ +++|+||+|++++++++||++|||||++||. ++++|+|++.+.|++ T Consensus 232 g~~n~g~~~vl~-----~g~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~-----~~~sn~e~~~~~f~~ 301 (403) T protein:vir:10 232 PSTGQSSVLILD-----GGMKAKPYSQISSFKDLDFKEDIEGFNKSICLAFGVPQVLLDG-----GNNANIRPNIELFYY 301 (403) T ss_pred CcccCcceeecC-----CCceeEEecccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCC-----CCCcCHHHHHHHHHH Confidence 789999999994 5889999986 5789999999999999999999999999974 467899999999999 Q ss_pred HHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 311 NELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 311 ~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) +||.||+++|| ++|++|+.+ ++|+..+++.-.+ T Consensus 302 ~tl~P~~~~ie~~l~~~L~~~-~~~d~~~~~~l~~ 335 (403) T protein:vir:10 302 MTIIPMLNKLTSSLTFFFGYK-ITPNTKEVAALTP 335 (403) T ss_pred HHHHHHHHHHHHHHHHhcCce-eeeccchhhhccc Confidence 99999999998 699999764 5665554444333 No 83 >protein:vir:4952 Length: 386 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049928;genbank:gi:9632899;genbank:GeneID:1262075 Probab=100.00 E-value=1.4e-58 Score=337.68 Aligned_cols=312 Identities=11% Similarity=0.105 Sum_probs=237.3 Q ss_pred CCCCCCCCCCCchhhcccc----c---cceEEE---EcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcch Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTAS----A---PKMEAF---TFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAV 70 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~----~---~~~~~~---~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 70 (344) |.--++...+..+...+.. . ...... ..-.+..+|.+++|++||.+|++.. .+.|+.+++.. T Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~i-a~~p~~~~~~~------- 72 (386) T protein:vir:49 1 MPIFNITNLATESPPINQESFFDIADSDFLASLNSSEWVSAENALKNSDLFSIISQLSNDL-ATAKITTSRKQ------- 72 (386) T ss_pred CchhhhhccCCCCcccchhhhhhhhhccccccccCCceechhhhhccHHHHHHHHHHHHHh-hhCceeeccch------- Confidence 4322222111111111110 0 000000 1124567899999999999998765 47888765421 Q ss_pred hhhhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---eEEEE Q lcl|Aclame:pro 71 HHSSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---VYWWV 146 (344) Q Consensus 71 ~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---~~y~~ 146 (344) ...+..+||+++++..|++. +.+++++||||++|+|+..|++++|+|++|..|++..+.+ .+|.+ T Consensus 73 -----------~~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~i~~~~v~v~~~~~~~~~~y~~ 141 (386) T protein:vir:49 73 -----------LQGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNDNGRDMKWEYLRPSQVSFNRLDNQNGLYYNI 141 (386) T ss_pred -----------hhhhhhccCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEecCceeEEEEcCCCceEEEEE Confidence 12245579999999999865 5588899999999999999999999999999998776543 34554 Q ss_pred c----CCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHH Q lcl|Aclame:pro 147 P----SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIE 222 (344) Q Consensus 147 ~----~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~ 222 (344) . .++....|+++||||+|.+++.++++|+||+.++..+++++.++++++.++|+||++|+++|++++ .+++++.+ T Consensus 142 ~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~-~~~~~~~~ 220 (386) T protein:vir:49 142 TFDDPHIAPKQHVPQNDILHFRLLSVDGGLTSVSPLMALGREFNIQKASDKLTISALKNALNANGILKIKG-GGLLDFKT 220 (386) T ss_pred EEcCccccceeEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEeCC-CCChHHHH Confidence 3 245677899999999999988778999999999999999999999999999999999999999875 57888888 Q ss_pred HHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHH Q lcl|Aclame:pro 223 MLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIE 302 (344) Q Consensus 223 ~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e 302 (344) ++++.|+. +.+|+++++++ +.|++|++++.+++|+||+|++++++++||++|||||++||+... ++++.+ T Consensus 221 ~~~~~~~~--~~~n~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVPp~~lg~~~~---~~~~~~ 290 (386) T protein:vir:49 221 KVSRSRQA--MKQMQGGPLVL-----DDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESIVGGDGD---QQSSLE 290 (386) T ss_pred HHHHHHHH--hccCCCCceec-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC---ccchHH Confidence 88888864 44799999999 458899999999999999999999999999999999999997432 345544 Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 303 KVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 303 ~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) +...|+..+|.|+++.|+ +|+++|+.+ +.|+.-.+...++ T Consensus 291 -~~~~~~~~~i~~~l~~i~~~~~~~l~~~-~~~~~~~~~~~d~ 331 (386) T protein:vir:49 291 -MIYNIYFKSVSRYLRPFVSEMSKKLSCE-VDVDISPAVDPTG 331 (386) T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhcch-hcccchhhhccCH Confidence 446788999999999997 799999875 3444333333333 No 84 >protein:vir:960 Length: 413 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076614;genbank:gi:13095722;genbank:GeneID:920279 Probab=100.00 E-value=3e-58 Score=335.96 Aligned_cols=321 Identities=16% Similarity=0.178 Sum_probs=235.8 Q ss_pred CCCCCCC--------CCCCch----hhccccccceEEEE--------cCCcc-ccccchhHHHHhhhhhcCcceeccccH Q lcl|Aclame:pro 1 MSKKKGK--------TLQPAA----KKMTASAPKMEAFT--------FGEPV-PVLDRRDILDYVECISNGRWYEPPISF 59 (344) Q Consensus 1 msk~~~~--------~~~~~~----~~~~~~~~~~~~~~--------~~~p~-~~~~~~~v~~~~~~~~~~~~~~~p~~~ 59 (344) ||-+||. +.+... ......++ ...++ +.++. .++.+++|++||.+|+++.+ +.|+.+ T Consensus 4 ~~~~~~~~~m~~F~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~cI~~ia~~ia-~~~~~~ 81 (413) T protein:vir:96 4 VSEIRKDKNLKFFNNKRSPTEESKAKDEIPKAP-QVVMTLPNFFKELISDGYTKLSDSPEVRMAVDCIADLVS-NMTIQL 81 (413) T ss_pred cchhhhhhcCCccccCCCcchhhhhhccccccc-cccccchhhHhhhccchhHHHhhchHHHHHHHHHHHhhc-cCceEE Confidence 4433322 111111 11111111 11111 12233 35678999999999987754 788877 Q ss_pred HHHHHHhhcchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCC-ceEEEEEecCcceecc Q lcl|Aclame:pro 60 TGLAKSLRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTG-KVIRLETSPAKYTRRG 137 (344) Q Consensus 60 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G-~~~~L~pl~~~~v~~~ 137 (344) ++....... .+.+ ....++..+||+++++++|++. +.+++++||+|++++|+..| .+++|+|++|.+|++. T Consensus 82 ~~~~~~~~~------~~~~-~~~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~r~~~g~~~~~L~~l~~~~v~~~ 154 (413) T protein:vir:96 82 MQNGETGDK------RIKN-DLSRVVDIEPNKYLSRKTFIQWLVRSMLLEGNGNAVVKPQVSGDKIIGLTPISPYKVTFN 154 (413) T ss_pred EEecCCCcc------cccc-HHHHHHHhccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCceEEEEEecCceeEEE Confidence 543221111 1111 1234566789999999998765 56889999999999999877 5789999999999887 Q ss_pred ccCce-EEEEcCCceEEEEecccEEEecC-CCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCC Q lcl|Aclame:pro 138 VEEDV-YWWVPSFNEPTAFAPGSVFHLLE-PDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAV 215 (344) Q Consensus 138 ~~~~~-~y~~~~~~~~~~~~~~eViH~r~-~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~ 215 (344) .+.+. +|.+...+. +++++||||+|. +++.++++|+||+.++..++.++.++++|..++|+||++|+|+|+++ +. T Consensus 155 ~~~~~~~y~~~~~~~--~~~~~evih~k~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~-~~ 231 (413) T protein:vir:96 155 VSDDDLDYSITFDNK--EYDPSTLLHFVLNPSIERPFIGTGYKVALKDIVGNLKQASVTKKGFMASEYMPNLIVSVD-SD 231 (413) T ss_pred EcCCeEEEEEeecCc--EEchhhEEEEeccCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeC-CC Confidence 66554 555555553 678999999984 67778999999999999999999999999999999999999999986 46 Q ss_pred CCHHHHHHHHHHHHH-hhccccccccccccCCCccccceeeec-ccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccc Q lcl|Aclame:pro 216 QDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPL-SEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPE 293 (344) Q Consensus 216 l~~e~~~~lk~~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl-~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~ 293 (344) +++++.+++++.|++ +.|..|+++++|++.+ +..++.+ +++++|+||+|++++++++||++|||||.+||.. T Consensus 232 l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~~----~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~-- 305 (413) T protein:vir:96 232 SDELSDEEGRENFEEMYLKRKEAGKPWIIPEG----MVNVQQIKPLTLNDLAINDAVTLDKKTVAGIFGVPAFLLGVG-- 305 (413) T ss_pred CCHHHHHHHHHHHHHHhcCccccCceeeecCC----cccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCC-- Confidence 899999999999976 5677899999998654 3345554 3578999999999999999999999999999852 Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcce--eccccccCCCCC Q lcl|Aclame:pro 294 NVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVI--RFKNYSLDTDNG 344 (344) Q Consensus 294 ~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~--~f~~y~l~~~~~ 344 (344) ++.+++...|+++||+|+++.|| +||++|.++.. +|+.-+|...|- T Consensus 306 -----~~~~~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~fd~~~ll~~d~ 354 (413) T protein:vir:96 306 -----TYNKDEFNNFINTKIMSIAQVIQQTYNKLIVEEDMYFSLNPRSLYNYSL 354 (413) T ss_pred -----cchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEechhhhccCH Confidence 23488889999999999999998 79999976533 333333322222 No 85 >protein:vir:9359 Length: 348 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803337;genbank:gi:29028648;genbank:GeneID:1258089 Probab=100.00 E-value=3e-57 Score=330.48 Aligned_cols=270 Identities=13% Similarity=0.154 Sum_probs=218.2 Q ss_pred ceeccccHHHHHHHhhcchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHHH-HHHHhcCCeEEEEEECCCCceEEEEEec Q lcl|Aclame:pro 52 WYEPPISFTGLAKSLRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFV-LDFLVFGNAFLEKRYSTTGKVIRLETSP 130 (344) Q Consensus 52 ~~~~p~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~~-~~~ll~Gnay~~i~r~~~G~~~~L~pl~ 130 (344) +.++|+.+++-.+ ...| + -..++..+||+++++.+|++.+ .+++++||+|++++|+..|+|++|+|++ T Consensus 1 ia~lp~~~~~~~~----~~~~--~-----l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~l~ 69 (348) T protein:vir:93 1 MASLPLKMYEDYK----VVNT--E-----VSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLN 69 (348) T ss_pred CcccceEeEecCc----Cccc--H-----HHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEc Confidence 5678888754221 1112 1 1245667899999999998755 5888999999999999999999999999 Q ss_pred CcceeccccCc---eEEEE-cCCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCc Q lcl|Aclame:pro 131 AKYTRRGVEED---VYWWV-PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAG 206 (344) Q Consensus 131 ~~~v~~~~~~~---~~y~~-~~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~ 206 (344) |..|++..+.+ .+|.+ ..+|..++|+++||||+|.+++.++++|+||+..++.+++++.++++++ ++.++..++ T Consensus 70 ~~~v~~~~~~~~~~~~y~~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~--~~~~~~~~~ 147 (348) T protein:vir:93 70 PDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDS 147 (348) T ss_pred CCceEEEEeCCCcEEEEEEEcCCCeEEEEccccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHH--HHhcCCCce Confidence 99998765443 23444 4557778899999999999888899999999999999999999999885 444444456 Q ss_pred eEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHH Q lcl|Aclame:pro 207 YIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQ 286 (344) Q Consensus 207 gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~ 286 (344) ++++. ++.+++|+.+++++.|++.. +|+++++++ +.|++|+|++++++|+||+|++++++++||++|||||+ T Consensus 148 ~i~~~-~~~l~~e~~~~~~~~~~~~~--~n~~~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~ 219 (348) T protein:vir:93 148 FMLKY-GSNVSTEKRQQVLEDFKQYY--EENGGILFQ-----EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSI 219 (348) T ss_pred eEEec-CCCCCHHHHHHHHHHHHHHh--hcCCCeeec-----CCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHH Confidence 66654 56799999999999998765 477889998 46889999999999999999999999999999999999 Q ss_pred HhccccccccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 287 LMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 287 ~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) +||.. ++++++|+|++.+.|+++||+|+++.|| +||++|.++..+-..+.++||.. T Consensus 220 ~lg~~--~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~l~~~~~~~~g~~i~fd~~ 276 (348) T protein:vir:93 220 FLNAR--SNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVK 276 (348) T ss_pred HhCCC--CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccCcceEEeech Confidence 99974 4578999999999999999999999998 79999976543222333443322 No 86 >protein:vir:80134 Length: 403 # NCBI annotation: Phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425602;genbank:gi:155042935;genbank:GeneID:5469563 Probab=100.00 E-value=2e-57 Score=331.37 Aligned_cols=322 Identities=14% Similarity=0.083 Sum_probs=230.6 Q ss_pred CC----CCCCCCCCCchhhccccccceEEEEcCCccc-cccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhh Q lcl|Aclame:pro 1 MS----KKKGKTLQPAAKKMTASAPKMEAFTFGEPVP-VLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSP 75 (344) Q Consensus 1 ms----k~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~ 75 (344) |. -||+....+..................++.. .+.+++|++||.+|+++.+ +.|+.+++........ T Consensus 1 Mg~~~~f~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~I~~ia~~iA-~~p~~~~~~~~~g~~~------ 73 (403) T protein:vir:80 1 MGLFNFFRRKTRSEPTNAISWFLTQEAYDTLAIPGYTRLSDNPEVRMAVHKIAELIS-SMTIHLMQNTDNGDIR------ 73 (403) T ss_pred CcccccccccccccccchhhhhcccccccccccchhhhhhhhHHHHHHHHHHHHhhh-hCceEEEEecCCceee------ Confidence 66 2222211111111111111111222233333 3457899999999987655 7788875422111111 Q ss_pred hhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHh--cCCeEEEEEECCCCceEEEEEecCcceeccccCceEEEEcCCceE Q lcl|Aclame:pro 76 IYVKRNILASTFIPHPWLSQQDFSRF-VLDFLV--FGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEP 152 (344) Q Consensus 76 i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll--~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~y~~~~~~~~ 152 (344) +.+. ...++..+||+++++++|++. +.++++ .||||+++.|+..|++++|+|++|..|++..+.+.+... ..+ T Consensus 74 ~~~~-~~~lL~~~PN~~~t~~~f~~~~v~~~ll~~~Gna~i~~~~~~~g~~~~L~~l~p~~v~~~~~~~g~~~~-y~~-- 149 (403) T protein:vir:80 74 IKNE-LSRKIDINPYSLMTRKAWMYNIVYTMLLDGEGNSVVFPKYTTSGLIDELIPLAPSKVSFVDTDTGYQIW-YQG-- 149 (403) T ss_pred cCCh-HHHHHhccCCcCCCHHHHHHHHHHHHhhcCCccEEEEEEEcCCCcEEEEEEEcCCeeEEEEcCCceEEE-Eee-- Confidence 1111 234566789999999999875 557777 488999999999999999999999999987776653222 222 Q ss_pred EEEecccEEEec-CCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHH-H Q lcl|Aclame:pro 153 TAFAPGSVFHLL-EPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMV-K 230 (344) Q Consensus 153 ~~~~~~eViH~r-~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~-~ 230 (344) ..|+++||||++ .+++.++++|+||+..++.+++.+.++++++.++|+||++|+|||++++ .+++++.+++++.|. + T Consensus 150 ~~~~~~eiih~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~-~~~~~~~~~~~~~~~~~ 228 (403) T protein:vir:80 150 KAYNYDEVLHFIVNPDPEKPYMGRGYRVVLKDIVNNLKQATTTKKSFMSGKYMPSLIVKVDA-ATAELSSEEGRNAVFKK 228 (403) T ss_pred cccchhhEEEEeccCCCcCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCC-CCChHHHHHHHHHHHHH Confidence 358899999999 4677889999999999999999999999999999999999999999875 578888899999985 5 Q ss_pred hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHH Q lcl|Aclame:pro 231 SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVR 310 (344) Q Consensus 231 ~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~ 310 (344) +.|..|+++++++..++. +..+++|+ +++|+||+|++++++++||++|||||++||+.+. .++....|++ T Consensus 229 ~~~~~~~g~~~~~~~~~~-~~~~~~~l--~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~-------~~~~~~~f~~ 298 (403) T protein:vir:80 229 YLEASEAGQPWIIPAELL-DVEQVKPL--SLKDLAIHETVELDKRTVAGIFGVPAFLLGVGKY-------DKDEYNNFIN 298 (403) T ss_pred HhhhhhcCCeeeeccccc-ccceeccC--CHHHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCc-------cHHHHHHHHH Confidence 678889999988865432 34466665 5789999999999999999999999999986321 2445567999 Q ss_pred HHHHHHHHHHH-HHHHhhCCcc---eeccccccCCCCC Q lcl|Aclame:pro 311 NELIPLQDRIR-EINGWLGQEV---IRFKNYSLDTDNG 344 (344) Q Consensus 311 ~~l~P~~~~ie-eln~~L~~~~---~~f~~y~l~~~~~ 344 (344) +||+|++++|| +||++|..+. ++|+.-.|...|= T Consensus 299 ~~l~P~~~~ie~~l~~kll~~~~~~~~f~~~~ll~~d~ 336 (403) T protein:vir:80 299 STILPIAKGIEQELTRKLLISPDLYFKFNPRSLYAYDL 336 (403) T ss_pred HHHHHHHHHHHHHHHHhccCCCCcEEEeechhhhccCH Confidence 99999999999 7999987642 2333222222221 No 87 >protein:vir:98853 Length: 219 # NCBI annotation: hypothetical protein # Family: family:all:196 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654729;genbank:gi:109302914;genbank:GeneID:4156058 Probab=100.00 E-value=1.2e-57 Score=332.72 Aligned_cols=210 Identities=35% Similarity=0.571 Sum_probs=190.8 Q ss_pred eeccccCceEEEEcC-----CceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceE Q lcl|Aclame:pro 134 TRRGVEEDVYWWVPS-----FNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYI 208 (344) Q Consensus 134 v~~~~~~~~~y~~~~-----~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gi 208 (344) ||+.++++.+|.+.. +|+..+|.++||||+|.+++.++++|+||+.+++.++.++.++++|+.+||+||++|+|| T Consensus 1 ~r~~~dg~~~y~~~~~~~~~~g~~~~~~~~eilH~r~~~~~~~~~Glspi~~a~~~i~~~~aa~~~~~~~f~Ng~~p~gi 80 (219) T protein:vir:98 1 MRVCKDGNYKYLMKKSLYDTKSEIYEYNKNDVIFIKLYDPMQQVYGSPDYVGGITSALLNSDATIFRRRYYSNGAHMGFI 80 (219) T ss_pred CceeecCeEEEEEecceecCCceeEEeccccEEEecCCCCCCCcceecHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceE Confidence 888888888776643 377889999999999999989999999999999999999999999999999999999999 Q ss_pred EEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHh Q lcl|Aclame:pro 209 MYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLM 288 (344) Q Consensus 209 l~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l 288 (344) |+++++.+++++++++++.|++++|++|+++++|+.++++++|++|+|++++++|+||+|++++++++||++|||||++| T Consensus 81 l~~~~~~l~~e~~~~~~~~~~~~~g~~n~~~~~l~~~gg~~~G~~~~~~~~~~~d~qfle~rk~~~~eIa~~fgVPp~~l 160 (219) T protein:vir:98 81 LYSTDPDMTEEMEDEIAERIRDSKGVGNFRSMFVNIAGGHPDGLKVIPIGDTGQKDEFANIKNISAQDVLTSHRFPPGLS 160 (219) T ss_pred EEeCCCCCCHHHHHHHHHHHHHhcCcccccceeEecCCCCccceeEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHc Confidence 99898889999999999999988999999999999999888999999999999999999999999999999999999999 Q ss_pred ccccccccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCC---cceeccccccCCCC Q lcl|Aclame:pro 289 GGKPENVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQ---EVIRFKNYSLDTDN 343 (344) Q Consensus 289 g~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~---~~~~f~~y~l~~~~ 343 (344) |+.+.++++++|+|++++.|+++||+||+++|| +||+++.. ..++|+.+++.=.| T Consensus 161 G~~~~~~~~~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~~~~~~~~~~~F~~~~~~d~~ 219 (219) T protein:vir:98 161 GIIPVNTAGLGDPLKIREAYQADEVLPLQEIIAESINSDYEIKSALKVNFKQPEKRDKN 219 (219) T ss_pred ccccCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccEEeecCcccccCC Confidence 998777889999999999999999999999999 69987432 24667765544444 No 88 >protein:vir:95378 Length: 406 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764474;genbank:gi:115334628;genbank:GeneID:5179265 Probab=100.00 E-value=1.5e-56 Score=326.61 Aligned_cols=321 Identities=13% Similarity=0.086 Sum_probs=236.5 Q ss_pred CCCC---CCCCCCCchhhcccc-----ccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhh Q lcl|Aclame:pro 1 MSKK---KGKTLQPAAKKMTAS-----APKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHH 72 (344) Q Consensus 1 msk~---~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~ 72 (344) |.-- ++............. .+......-.+...++.+++|++||.+|+.+.+ +.|+.+++..+..+....| T Consensus 1 Mg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia-~~~~~~~~~~~~~~~~~~~ 79 (406) T protein:vir:95 1 MGLFDRWRRTKRKSKIRADTGYVGLFMSGEDVSFLVPGYVRLSDNPEVRMAVHKIADLIS-SMTIYLMQNTEDGDIRIRN 79 (406) T ss_pred CcchhhhccccccccccccchhhhhhccCcccCccccCHHHHhhcHHHHHHHHHHHHhhc-cCceEEEEecCCcceeecc Confidence 4322 111111111110000 000001111234567889999999999987654 7888876543322111111 Q ss_pred hhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCC--eEEEEEECCCCceEEEEEecCcceeccccCceEEEEcCC Q lcl|Aclame:pro 73 SSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGN--AFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSF 149 (344) Q Consensus 73 ~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gn--ay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~y~~~~~ 149 (344) ....++..+||+++++++|++. +.++++.|| +|+++.|+..|++++|+|++|.+|++..+.+.| .+..+ T Consensus 80 -------~~~~~l~~~PN~~~t~~~f~~~~~~~~ll~g~g~a~~~~~~~~~g~~~~l~~i~~~~v~~~~~~~~~-~~~~~ 151 (406) T protein:vir:95 80 -------ELSRKIDITPYSLMTRKSWMYNIVYTMLLDGEGNSVVFPKYTADGLIDELVPLTPSKVNFLDTPDGY-QVLYG 151 (406) T ss_pred -------hHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCceEEEEEEECCCCcEEEEEEEcCceeEEEEcCCeE-EEEec Confidence 1234567899999999999765 558888865 566788999999999999999999998887764 33344 Q ss_pred ceEEEEecccEEEecC-CCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 150 NEPTAFAPGSVFHLLE-PDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENM 228 (344) Q Consensus 150 ~~~~~~~~~eViH~r~-~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~ 228 (344) ++ +|+++||||+|. +.+.++++|+||+..+..++.++.++++++.++|+||++|+|+|++++ .+++++.+++++.| T Consensus 152 ~~--~~~~~evih~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~-~l~~e~~~~~~~~~ 228 (406) T protein:vir:95 152 GQ--TFNYDEVLHFIYNPDPERPYIGRGYRVVLKDIADNLKQATATKKSFMSGKYMPSLIVKVDA-ATAELSSEEGRNAV 228 (406) T ss_pred cE--EEchhHEEEeeccCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCC-CCCHHHHHHHHHHH Confidence 43 689999999995 566789999999999999999999999999999999999999999865 68999999999999 Q ss_pred HH-hhccccccccccccCCCccccceeeecc-cchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHH Q lcl|Aclame:pro 229 VK-SKGRNNFKNLFLYAPQGKADGIKIIPLS-EVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAK 306 (344) Q Consensus 229 ~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~-~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~ 306 (344) ++ +.|..|+++++|+..+ +.+++++. ++++|+||+|.+++++++||++|||||++||.. ++.+++.. T Consensus 229 ~~~~~g~~n~~~~~v~~~~----~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~-------~~~~~~~~ 297 (406) T protein:vir:95 229 FKKYLQATEAGQPWIIPAE----LLEVEQVKPLSLKDIAINEAVELDKRTVAGMFGVPAFLLGIG-------EFNRDEYN 297 (406) T ss_pred HHHhccccccCCceeecCC----CccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCC-------CchHHHHH Confidence 65 6788999999988643 44565653 578999999999999999999999999999853 24588889 Q ss_pred HHHHHHHHHHHHHHH-HHHHhhCCcc---eeccccccCCCCC Q lcl|Aclame:pro 307 VFVRNELIPLQDRIR-EINGWLGQEV---IRFKNYSLDTDNG 344 (344) Q Consensus 307 ~f~~~~l~P~~~~ie-eln~~L~~~~---~~f~~y~l~~~~~ 344 (344) .|+++||.|++++|| +||++|..+. ++|+.-.|...|- T Consensus 298 ~~~~~~l~P~~~~ie~~l~~~l~~~~~~~~~fd~~~l~~~d~ 339 (406) T protein:vir:95 298 NFINSTILPIAKGIEQELTRKLLISPDLYFKFNPRSLYAYDL 339 (406) T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEeechhhhcCCH Confidence 999999999999999 7999997642 3444333322222 No 89 >protein:vir:6210 Length: 394 # NCBI annotation: Portal protein # Family: family:all:10882 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852590;genbank:gi:31415850;genbank:GeneID:1489208 Probab=100.00 E-value=2.5e-56 Score=325.41 Aligned_cols=312 Identities=12% Similarity=0.067 Sum_probs=227.4 Q ss_pred CCC------CCCCCCCCchhhccccccceEEE--EcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhh Q lcl|Aclame:pro 1 MSK------KKGKTLQPAAKKMTASAPKMEAF--TFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHH 72 (344) Q Consensus 1 msk------~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~ 72 (344) |.- +..+...... .....-...... ....+..++..++|++|+.+|++..+ ++|+.+++-.. .+... | T Consensus 1 MGl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vt~~~al~~~~v~~~i~~Ia~~iA-~lp~~v~~~~g-~~~~~-~ 76 (394) T protein:vir:62 1 MGLRDRFSNYLFKKAEKRG-YLDNVLGKSIRYSGVYVTDSNILQSSDVYELLQDISNQMV-LADIVVEDEFG-NEIKD-D 76 (394) T ss_pred CchhhhhhhhccCCCCchh-hhhhhhhcccccCccccChhhhhccHHHHHHHHHHHHhhc-ccceEEEcCCC-cccch-h Confidence 441 1111111110 000000000000 01245678999999999999987755 78888764321 11111 1 Q ss_pred hhhhhhhhhhHHHhcccCCCCCHHHHHH-HHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCceEEEEcCCce Q lcl|Aclame:pro 73 SSPIYVKRNILASTFIPHPWLSQQDFSR-FVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNE 151 (344) Q Consensus 73 ~~~i~~~~~~~~~~~~pn~~~~~~~f~~-~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~y~~~~~~~ 151 (344) ....+..+||++++++.|++ ++.+++++||+|++|.|+..+.+. .+++..+...++.+..++ T Consensus 77 --------~~~~Ll~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~- 139 (394) T protein:vir:62 77 --------IALQILRNPNNYLTQSEFIKLMTNTYLLEGETFPILNGAQIHLAS--------NVFTELDDNLVEHFNIGG- 139 (394) T ss_pred --------hHHHHhccCCCCCCHHHHHHHHHHHHHhcCCeEEEEecceeeccc--------cceEEECCceEEEEeeCC- Confidence 12334458999999999986 556899999999999766544322 233334445555555554 Q ss_pred EEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCC-CCHHHHHHHHHHHHH Q lcl|Aclame:pro 152 PTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAV-QDRNDIEMLRENMVK 230 (344) Q Consensus 152 ~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~-l~~e~~~~lk~~~~~ 230 (344) ++|+++||||+|.++ .|+++|+||+..+..+|.++.++++|+.++|+||++|+|+|++++.. .++++.+++++.|++ T Consensus 140 -~~~~~~eiih~r~~~-~d~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~~~~~~~~~ 217 (394) T protein:vir:62 140 -HEIPPCMIRHVKNIG-ADHLRGKGILDLGRDTLEGVMSAEKTLTDKYKKGGLLTFLLNLDAHINPQNGAQSKLINAILD 217 (394) T ss_pred -EEechhheEEecCcC-CCCccccChHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCCCCCcCHHHHHHHHHHHHH Confidence 468999999999886 57899999999999999999999999999999999999999987542 346678899999965 Q ss_pred -hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHH Q lcl|Aclame:pro 231 -SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFV 309 (344) Q Consensus 231 -~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~ 309 (344) ++|..|+|+++|+..+ .++++++++.+++|+||+|++++++++||++|||||.+||. .+++|+|++.+.|+ T Consensus 218 ~~~g~~n~g~~~vl~~g---~~~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~-----~~~sn~e~~~~~~~ 289 (394) T protein:vir:62 218 QLESIDEARSVKMIPLG---KGYSIDTLKSPLDDEKTLAYLNVYKKDLGKFLGINVDTYTE-----LIKEDIEKAMMYIH 289 (394) T ss_pred HhccccccCceeEeeCC---CceeEEecCCCcchHHHHHHHHHHHHHHHHHhCCCHHHcCC-----CCCcCHHHHHHHHH Confidence 6788999999998653 35678899999999999999999999999999999999985 34579999999999 Q ss_pred HHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 310 RNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 310 ~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) ++||.|++++|| +||++|..+..+ +.+.++||.- T Consensus 290 ~~~l~P~~~~ie~~l~~kll~~~~~-~~~~~~fd~~ 324 (394) T protein:vir:62 290 NKAVRPIMKNFEDHLSLLFYAQNSG-KRIKFKINIL 324 (394) T ss_pred HHHHHHHHHHHHHHHhhhhcCcccc-CceEEEechh Confidence 999999999998 799998765433 2344555433 No 90 >protein:vir:78641 Length: 278 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429941;genbank:gi:156603995;genbank:GeneID:5525387 Probab=100.00 E-value=2.7e-55 Score=319.72 Aligned_cols=270 Identities=13% Similarity=0.147 Sum_probs=221.0 Q ss_pred ceeccccHHHHHHHhhcchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHHH-HHHHhcCCeEEEEEECCCCceEEEEEec Q lcl|Aclame:pro 52 WYEPPISFTGLAKSLRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFV-LDFLVFGNAFLEKRYSTTGKVIRLETSP 130 (344) Q Consensus 52 ~~~~p~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~~-~~~ll~Gnay~~i~r~~~G~~~~L~pl~ 130 (344) +.++|+.+++-.+. . .| .+ ..++..+||+++++.+|++.+ .+++++||||++++|+..|++++|+|++ T Consensus 1 ia~l~~~~~~~~~~---~-~~--~l-----~~lL~~~PN~~~t~~~f~~~~~~~ll~~Gna~~~i~r~~~G~~~~l~~l~ 69 (278) T protein:vir:78 1 MASLPLKMYEDYKV---V-NT--EV-----SDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLN 69 (278) T ss_pred CccceeEEEecCcc---c-cc--HH-----HHHHHhcCCCCCCHHHHHHHHHHHHhhcCCEEEEEEECCCCcEEEEEEEC Confidence 55777776542211 1 11 11 234567899999999998754 5889999999999999999999999999 Q ss_pred CcceeccccCc---eEEEEc-CCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCc Q lcl|Aclame:pro 131 AKYTRRGVEED---VYWWVP-SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAG 206 (344) Q Consensus 131 ~~~v~~~~~~~---~~y~~~-~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~ 206 (344) |.+|++..+.+ .+|.+. .+|...+|+++||||+|.+++.++++|+||+.++..++..+.++++++...+.| .|+ T Consensus 70 ~~~v~v~~~~~~~~~~y~~~~~~g~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~~--~~~ 147 (278) T protein:vir:78 70 PDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQK--PDS 147 (278) T ss_pred CceeEEEEcCCCceEEEEEEcCCceEEEEccccEEEECCCCCCCCeeeccHHHHHHHHHHHHHHHHHHHHHHhcC--CCc Confidence 99999876543 244443 456788999999999999988899999999999999999999999997655555 478 Q ss_pred eEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHH Q lcl|Aclame:pro 207 YIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQ 286 (344) Q Consensus 207 gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~ 286 (344) ++++.+ +.+++|+.+++++.|++.. +|++++++++ +|++|++++++++|+||+|++++++++||++|||||. T Consensus 148 ~i~~~~-~~l~~e~~~~~~~~~~~~~--~~~g~~~vl~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~ 219 (278) T protein:vir:78 148 FMLKYG-SNVGKEKRQQVLEDFKQYY--EENGGILFQE-----PGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSV 219 (278) T ss_pred EEEEeC-CCCCHHHHHHHHHHHHHHh--ccCCCceecC-----CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHH Confidence 998854 6799999999999998755 4778999984 5889999999999999999999999999999999999 Q ss_pred HhccccccccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 287 LMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 287 ~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) ++|+. ++++++|++++.+.|+++||+|+++.|| +||++|.++..+-..|.+.||=. T Consensus 220 ~lg~~--~~~~~sn~~~~~~~~~~~~l~P~~~~i~~~ln~~L~~~~e~~~g~~~~f~~~ 276 (278) T protein:vir:78 220 FLNAR--SNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKIGILNLTLN 276 (278) T ss_pred HhCCC--CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhcCCceEEEecc Confidence 99985 3478999999999999999999999998 79999987543333344444433 No 91 >protein:vir:79772 Length: 648 # NCBI annotation: portal protein # Family: family:all:3222 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429612;genbank:gi:156564103;genbank:GeneID:5525537 Probab=100.00 E-value=7.5e-52 Score=300.88 Aligned_cols=335 Identities=12% Similarity=0.078 Sum_probs=226.0 Q ss_pred CCCCCCCCCCCc----------hhhccccccceEEEEcCCccccccchhHHHHhhhhhcC-cceeccccHHHHHHHhhcc Q lcl|Aclame:pro 1 MSKKKGKTLQPA----------AKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNG-RWYEPPISFTGLAKSLRAA 69 (344) Q Consensus 1 msk~~~~~~~~~----------~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~-~~~~~p~~~~~l~~~~~~~ 69 (344) |-.+..-...|. +..+.+..+.+....+.||..+.--..-..|.....++ .+++||+++..+.++...+ T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~d~~~~~~~r~g~~~~~~~~g~~~~~epp~d~~~l~~l~~~n 96 (648) T protein:vir:79 17 MWRDEDDDKEPLVLEESMQLGEAPGAMPKGGGGGGSAKRDPKMSLVKRIGLAIMDGGGGGRDFEEPEFDFNEITSAYNTE 96 (648) T ss_pred hccCccccccccccccccccCCCccccCCCCcccccccccchhHHHHHhHHHHHhhcCCccccccCCcCHHHHHHHHhcC Confidence 332111111111 00112233444455667775543322112222222222 4678999999998988899 Q ss_pred hhhhhhhhhhhhh---------------------HHHhcccCCCCCHHHHHH-HHHHHHhcCCeEEEEEECCCCc----- Q lcl|Aclame:pro 70 VHHSSPIYVKRNI---------------------LASTFIPHPWLSQQDFSR-FVLDFLVFGNAFLEKRYSTTGK----- 122 (344) Q Consensus 70 ~~~~~~i~~~~~~---------------------~~~~~~pn~~~~~~~f~~-~~~~~ll~Gnay~~i~r~~~G~----- 122 (344) +++..||...+.. .++..+||++++.+.|++ ++.+++++||||++|+|+.+|. T Consensus 97 p~V~~aI~iia~~ia~l~~~i~~~~~~~~~~~~~~~ll~rPn~~~t~~~f~~~l~~~lll~GNAYveiiRd~~G~~~~~l 176 (648) T protein:vir:79 97 GYVRQAVDKYIEMMFKADWDFVSKNPNAVEYIRMRFTLMAEATQIPTNQLFIEIAEDLVKYCNVVIAKSRAKDALPFQGM 176 (648) T ss_pred hHHHHHHHHHHHHHhhCcceEEecCCccchhhHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCeEEEEEecCCCccchhh Confidence 9998887554321 223458999999988776 5679999999999999998883 Q ss_pred ----------eEEEEEecCcceeccccCce---EE--EEcCCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHH Q lcl|Aclame:pro 123 ----------VIRLETSPAKYTRRGVEEDV---YW--WVPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWL 187 (344) Q Consensus 123 ----------~~~L~pl~~~~v~~~~~~~~---~y--~~~~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~ 187 (344) +++|+|++|.+|++..+... +| ...+++..+.|+++||||+|.+.+.++++|+||+.+++++|++ T Consensus 177 ~~~~~~~~~~v~~l~pl~p~~v~v~~d~~g~~~~Y~y~~~g~~~~~~~~~~dIIHik~~~~~d~~~GlSpi~~a~~aI~l 256 (648) T protein:vir:79 177 NVMGVGDSMPVAGYFPLNLASMKVKRDKFGMIKGWQQEQEGQDKPQKFKPEDIVHIYYKREKGRAFGTPWLLPALDDIRA 256 (648) T ss_pred hhhhhccccceeeeEeecCceeEEEEcCCCceeeeEEEecCCceeEEecCccEEEEccCCCCCCceeccHHHHHHHHHHH Confidence 47899999999987654432 23 3345566778999999999987778899999999999999999 Q ss_pred HHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHH Q lcl|Aclame:pro 188 NESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFF 267 (344) Q Consensus 188 ~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~ 267 (344) +.++++|+.+||+||++|+|+|+++......++.+++++.|+....+ ..+.+++.+.+.+.+.+.+ +++|+||+ T Consensus 257 ~~aa~~~~~~fF~NGa~P~gil~~~~~~~~~e~~k~~~e~~~~~~~~-----~~i~gg~v~~~~~~i~~~~-s~~dlqfl 330 (648) T protein:vir:79 257 LRQVEENVLRLVYRNLHPLWHVKVGLEQEGFGAEEGEVDLVRGEVEN-----MDVEGGMVTTERVNISSIA-SNQIIDAK 330 (648) T ss_pred HHHHHHHHHHHHhccCCccEEEEeCCCccchHHHHHHHHHHHHhccc-----ccccccccccceeeccccC-CHHHHHHH Confidence 99999999999999999999999754334455556666666543322 2333333334445554443 66899999 Q ss_pred HHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHH-----HHHHhhCC-----------cc Q lcl|Aclame:pro 268 NIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIR-----EINGWLGQ-----------EV 331 (344) Q Consensus 268 e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie-----eln~~L~~-----------~~ 331 (344) |++++++++||++|||||++||+. +++++++.+++... +..++.|++..++ ++++.+.. .. T Consensus 331 e~rk~~~~eIa~aFgVPP~lLG~~--~~ss~stae~~~~~-~~~~i~~l~~~i~~~le~~~~~~ll~e~~l~~~l~~d~~ 407 (648) T protein:vir:79 331 EYLKHFEQRAFTVLGVSELMMGRG--GTASRSTGDNLSSD-FKDRIKALQKVMATFINEFMVKEILMEGGFDPVLNPDDK 407 (648) T ss_pred HHHHHHHHHHHHHhCCCHhHcccC--CCccchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccce Confidence 999999999999999999999985 34667777766554 5667877766553 23322211 12 Q ss_pred eeccccccCCCCC Q lcl|Aclame:pro 332 IRFKNYSLDTDNG 344 (344) Q Consensus 332 ~~f~~y~l~~~~~ 344 (344) ++|+..+|+..|- T Consensus 408 ieF~~~~Llr~D~ 420 (648) T protein:vir:79 408 VEFRFNEIDMDSK 420 (648) T ss_pred EEEeecccchhhH Confidence 4555445555443 No 92 >protein:vir:95965 Length: 385 # NCBI annotation: ORF011 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239800;genbank:gi:66395461;genbank:GeneID:5132882 Probab=100.00 E-value=7.3e-51 Score=295.46 Aligned_cols=306 Identities=11% Similarity=0.062 Sum_probs=218.3 Q ss_pred CCCCCC---CCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhh Q lcl|Aclame:pro 1 MSKKKG---KTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIY 77 (344) Q Consensus 1 msk~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~ 77 (344) |+=-.+ +.... ......+.+.-..+..++.+++|++||.+|+++ +.+.|+.+++-.+. ..| . T Consensus 1 Mg~f~~~f~~~~~~------~~~~~~~~~~~~~~~~a~~~~~v~~~i~~ia~~-ia~~p~~~~~~~~~----~~~--~-- 65 (385) T protein:vir:95 1 MGLFDSVFKRHSEL------SWMYDLEFLQDKSKKAYLKQIALNTVVEMVART-ISQSEFRVMKNNTK----EKG--T-- 65 (385) T ss_pred CchhhhhhccCccc------ccccchhhhhccchhhhhhhHHHHHHHHHHHHH-HcccceeeeecCcc----ccc--h-- Confidence 543111 11111 111112233334567789999999999999876 45788887652211 111 1 Q ss_pred hhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCceEEEEcCCceEEEEe Q lcl|Aclame:pro 78 VKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFA 156 (344) Q Consensus 78 ~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~y~~~~~~~~~~~~ 156 (344) ...++..+||++++++.|++. +.+++++||+|+++.|++ +.++.++++.+..+....+.-....+..++...+++ T Consensus 66 ---l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (385) T protein:vir:95 66 ---LYYLLNVRPNRNQNAVDFWQKFIFKLIMDNEVLVVKNDEG-HFFVADDFEKEDELGLYSHRFTNVLVNDFEFKRVFT 141 (385) T ss_pred ---HHHHHhcccCcCCCHHHHHHHHHHHHhhcCceEEEEecCC-Ceeeccccccccccccccccceeeeecccceeeeec Confidence 123456789999999999765 568899999999988775 556666666665554433322222233445567899 Q ss_pred cccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeC-CCCCCHHHHHHHHHHHHHh-hcc Q lcl|Aclame:pro 157 PGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVT-DAVQDRNDIEMLRENMVKS-KGR 234 (344) Q Consensus 157 ~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~-~~~l~~e~~~~lk~~~~~~-~g~ 234 (344) ++||||+|.+++.+..+|.||+..+..++..+.++.. | ++.|+|+|+++ ...+++|+.+++++.|++. +|. T Consensus 142 ~~eiih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~-----~--~~~~~g~l~~~~~~~~~~e~~~~~~~~~~~~~~g~ 214 (385) T protein:vir:95 142 MDDVIYLKYNNQKLDAFSLGLFEDYGEIFGRMIDLQM-----L--NNQIRGILKVDATKFYNKEKQKELQAYIDTLFDAF 214 (385) T ss_pred cccEEEecCCCCCcccccchHHHHHHHHHHHHHHHHH-----h--cCCCceEEEeCCccCCCHHHHHHHHHHHHHHhhhh Confidence 9999999998877778999999999999887766542 2 33478999886 3568999999999999765 555 Q ss_pred ccc-cccccccCCCccccceeeeccc------chhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHH Q lcl|Aclame:pro 235 NNF-KNLFLYAPQGKADGIKIIPLSE------VATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKV 307 (344) Q Consensus 235 ~n~-~~~~vl~~~~~~~gl~~~pl~~------~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~ 307 (344) .|. ++++++ ++|++|+++++ +++|+||+|++++++++||++|||||++|| ++++|+|++.+. T Consensus 215 ~~~~~~i~~l-----~~g~~~~~l~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~------~~~sn~e~~~~~ 283 (385) T protein:vir:95 215 QNNTIAVVPL-----TEGLAYEEHSNRGAAQSAQQFSELNELKKTVLTDVARMIGVPPSLVL------GEMADLEKTIES 283 (385) T ss_pred hhcCCceEEc-----CCCceeEeecccccccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhc------CCCcCHHHHHHH Confidence 444 456677 46888999875 567999999999999999999999999995 467899999999 Q ss_pred HHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 308 FVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 308 f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) |+++||+|+++.|| +||++|.++..+... .++||-. T Consensus 284 ~~~~~l~P~~~~ie~~l~~~L~~~~~~~~~-~~~fd~~ 320 (385) T protein:vir:95 284 YLQFCINPLLRKIEAELNSKFFYQDEYLND-DMHIKVV 320 (385) T ss_pred HHHHHHHHHHHHHHHHHHhhcCChhhcccc-eEEEech Confidence 99999999999998 699999876544322 2333222 No 93 >protein:vir:9507 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835554;genbank:gi:30043953;genbank:GeneID:1260535 Probab=100.00 E-value=1.5e-50 Score=293.77 Aligned_cols=306 Identities=15% Similarity=0.077 Sum_probs=218.2 Q ss_pred CCCCCC--CCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhh Q lcl|Aclame:pro 1 MSKKKG--KTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYV 78 (344) Q Consensus 1 msk~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~ 78 (344) |+--.+ +..+.. ........+--.....++.+++|++||..|+++. .+.|+.+++-.+ . ..+ T Consensus 1 Mg~f~~lf~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~v~~~i~~Ia~~i-A~~p~~~~~~~~---~-------~~~ 64 (395) T protein:vir:95 1 MSILEKIFKTRKDI-----TYMLDLDMIEDLSQQAYVKRLAIDSCIEFVARAV-AQSHFKVLEGNR---I-------QKN 64 (395) T ss_pred CchhhhhhccCccc-----cccccchhccccchhhhhhhHHHHHHHHHHHHhh-ccceeEeccCCc---c-------ccc Confidence 654211 111100 0000111111113456788999999999998765 478887764211 1 111 Q ss_pred hhhhHHHhcccCCCCCHHHHHHHH-HHHHhcCCeEEEEEECCCCceEEEEEecCcceeccc---cCceEEEEcCCceEEE Q lcl|Aclame:pro 79 KRNILASTFIPHPWLSQQDFSRFV-LDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGV---EEDVYWWVPSFNEPTA 154 (344) Q Consensus 79 ~~~~~~~~~~pn~~~~~~~f~~~~-~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~---~~~~~y~~~~~~~~~~ 154 (344) . ...++..+||++++++.|++.+ .++++.|++|+++.+++ + ++|+++..++... +....+.+..++...+ T Consensus 65 ~-~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (395) T protein:vir:95 65 D-VYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSK-E----LLIADSFYREEYALYDDIFKDVTVKDYTYQRT 138 (395) T ss_pred h-HHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCC-C----eEecCCccceeEeecCcceeEEEEcCceeeee Confidence 1 2234566899999999998755 57778888887775543 2 4555554443322 2222344455556678 Q ss_pred EecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 155 FAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGR 234 (344) Q Consensus 155 ~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~ 234 (344) ++++||||+|.+++....+|.||+..+..++..+.+ .|++|+.++|+|++++..+++++++++++.|++..++ T Consensus 139 ~~~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~~-------~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~~ 211 (395) T protein:vir:95 139 FTMQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMIG-------AQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNT 211 (395) T ss_pred eccccEEEEccCCCCcccccchHHHHHHHHHHHHHH-------HHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcc Confidence 999999999988877788999999999888776543 4678888999999988889999999999999987777 Q ss_pred ccccccccccCCCccccceeeecccchhHH-----HHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHH Q lcl|Aclame:pro 235 NNFKNLFLYAPQGKADGIKIIPLSEVATKD-----DFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFV 309 (344) Q Consensus 235 ~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~-----q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~ 309 (344) .|+++..++.- ++|++|+|++++++++ ||+|++++++++||++|||||++|| ++++|+|++.+.|+ T Consensus 212 ~~~~~~~v~~l---~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~------~~~sn~e~~~~~~~ 282 (395) T protein:vir:95 212 FNKNQLAIAPL---IEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIY------GETADLEKNTLVFE 282 (395) T ss_pred ccccCcceEEc---CCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhc------CcccCHHHHHHHHH Confidence 67666544311 4578899988887765 9999999999999999999999996 35789999999999 Q ss_pred HHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 310 RNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 310 ~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) ++||.|++++|| +||++|..+..++..++|+++.- T Consensus 283 ~~~l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~l 318 (395) T protein:vir:95 283 KFCLTPLLKKIQNELNAKLITQSMYLKDTRIEIVGV 318 (395) T ss_pred HHHHHHHHHHHHHHHHHhhcChhhhcccceecchhh Confidence 999999999998 79999988665555666665432 No 94 >protein:vir:100650 Length: 395 # NCBI annotation: 77ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958604;genbank:gi:41189523;genbank:GeneID:2743796 Probab=100.00 E-value=1.5e-50 Score=293.77 Aligned_cols=306 Identities=15% Similarity=0.077 Sum_probs=218.2 Q ss_pred CCCCCC--CCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhh Q lcl|Aclame:pro 1 MSKKKG--KTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYV 78 (344) Q Consensus 1 msk~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~ 78 (344) |+--.+ +..+.. ........+--.....++.+++|++||..|+++. .+.|+.+++-.+ . ..+ T Consensus 1 Mg~f~~lf~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~v~~~i~~Ia~~i-A~~p~~~~~~~~---~-------~~~ 64 (395) T protein:vir:10 1 MSILEKIFKTRKDI-----TYMLDLDMIEDLSQQAYVKRLAIDSCIEFVARAV-AQSHFKVLEGNR---I-------QKN 64 (395) T ss_pred CchhhhhhccCccc-----cccccchhccccchhhhhhhHHHHHHHHHHHHhh-ccceeEeccCCc---c-------ccc Confidence 654211 111100 0000111111113456788999999999998765 478887764211 1 111 Q ss_pred hhhhHHHhcccCCCCCHHHHHHHH-HHHHhcCCeEEEEEECCCCceEEEEEecCcceeccc---cCceEEEEcCCceEEE Q lcl|Aclame:pro 79 KRNILASTFIPHPWLSQQDFSRFV-LDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGV---EEDVYWWVPSFNEPTA 154 (344) Q Consensus 79 ~~~~~~~~~~pn~~~~~~~f~~~~-~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~---~~~~~y~~~~~~~~~~ 154 (344) . ...++..+||++++++.|++.+ .++++.|++|+++.+++ + ++|+++..++... +....+.+..++...+ T Consensus 65 ~-~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (395) T protein:vir:10 65 D-VYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSK-E----LLIADSFYREEYALYDDIFKDVTVKDYTYQRT 138 (395) T ss_pred h-HHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCC-C----eEecCCccceeEeecCcceeEEEEcCceeeee Confidence 1 2234566899999999998755 57778888887775543 2 4555554443322 2222344455556678 Q ss_pred EecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 155 FAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGR 234 (344) Q Consensus 155 ~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~ 234 (344) ++++||||+|.+++....+|.||+..+..++..+.+ .|++|+.++|+|++++..+++++++++++.|++..++ T Consensus 139 ~~~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~~-------~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~~ 211 (395) T protein:vir:10 139 FTMQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMIG-------AQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNT 211 (395) T ss_pred eccccEEEEccCCCCcccccchHHHHHHHHHHHHHH-------HHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcc Confidence 999999999988877788999999999888776543 4678888999999988889999999999999987777 Q ss_pred ccccccccccCCCccccceeeecccchhHH-----HHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHH Q lcl|Aclame:pro 235 NNFKNLFLYAPQGKADGIKIIPLSEVATKD-----DFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFV 309 (344) Q Consensus 235 ~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~-----q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~ 309 (344) .|+++..++.- ++|++|+|++++++++ ||+|++++++++||++|||||++|| ++++|+|++.+.|+ T Consensus 212 ~~~~~~~v~~l---~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~------~~~sn~e~~~~~~~ 282 (395) T protein:vir:10 212 FNKNQLAIAPL---IEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIY------GETADLEKNTLVFE 282 (395) T ss_pred ccccCcceEEc---CCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhc------CcccCHHHHHHHHH Confidence 67666544311 4578899988887765 9999999999999999999999996 35789999999999 Q ss_pred HHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 310 RNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 310 ~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) ++||.|++++|| +||++|..+..++..++|+++.- T Consensus 283 ~~~l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~l 318 (395) T protein:vir:10 283 KFCLTPLLKKIQNELNAKLITQSMYLKDTRIEIVGV 318 (395) T ss_pred HHHHHHHHHHHHHHHHHhhcChhhhcccceecchhh Confidence 999999999998 79999988665555666665432 No 95 >protein:vir:101289 Length: 395 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908829;genbank:gi:118725093;genbank:GeneID:4555860 Probab=100.00 E-value=1.5e-50 Score=293.77 Aligned_cols=306 Identities=15% Similarity=0.077 Sum_probs=218.2 Q ss_pred CCCCCC--CCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhh Q lcl|Aclame:pro 1 MSKKKG--KTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYV 78 (344) Q Consensus 1 msk~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~ 78 (344) |+--.+ +..+.. ........+--.....++.+++|++||..|+++. .+.|+.+++-.+ . ..+ T Consensus 1 Mg~f~~lf~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~v~~~i~~Ia~~i-A~~p~~~~~~~~---~-------~~~ 64 (395) T protein:vir:10 1 MSILEKIFKTRKDI-----TYMLDLDMIEDLSQQAYVKRLAIDSCIEFVARAV-AQSHFKVLEGNR---I-------QKN 64 (395) T ss_pred CchhhhhhccCccc-----cccccchhccccchhhhhhhHHHHHHHHHHHHhh-ccceeEeccCCc---c-------ccc Confidence 654211 111100 0000111111113456788999999999998765 478887764211 1 111 Q ss_pred hhhhHHHhcccCCCCCHHHHHHHH-HHHHhcCCeEEEEEECCCCceEEEEEecCcceeccc---cCceEEEEcCCceEEE Q lcl|Aclame:pro 79 KRNILASTFIPHPWLSQQDFSRFV-LDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGV---EEDVYWWVPSFNEPTA 154 (344) Q Consensus 79 ~~~~~~~~~~pn~~~~~~~f~~~~-~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~---~~~~~y~~~~~~~~~~ 154 (344) . ...++..+||++++++.|++.+ .++++.|++|+++.+++ + ++|+++..++... +....+.+..++...+ T Consensus 65 ~-~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (395) T protein:vir:10 65 D-VYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSK-E----LLIADSFYREEYALYDDIFKDVTVKDYTYQRT 138 (395) T ss_pred h-HHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCC-C----eEecCCccceeEeecCcceeEEEEcCceeeee Confidence 1 2234566899999999998755 57778888887775543 2 4555554443322 2222344455556678 Q ss_pred EecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 155 FAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGR 234 (344) Q Consensus 155 ~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~ 234 (344) ++++||||+|.+++....+|.||+..+..++..+.+ .|++|+.++|+|++++..+++++++++++.|++..++ T Consensus 139 ~~~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~~-------~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~~ 211 (395) T protein:vir:10 139 FTMQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMIG-------AQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNT 211 (395) T ss_pred eccccEEEEccCCCCcccccchHHHHHHHHHHHHHH-------HHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcc Confidence 999999999988877788999999999888776543 4678888999999988889999999999999987777 Q ss_pred ccccccccccCCCccccceeeecccchhHH-----HHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHH Q lcl|Aclame:pro 235 NNFKNLFLYAPQGKADGIKIIPLSEVATKD-----DFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFV 309 (344) Q Consensus 235 ~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~-----q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~ 309 (344) .|+++..++.- ++|++|+|++++++++ ||+|++++++++||++|||||++|| ++++|+|++.+.|+ T Consensus 212 ~~~~~~~v~~l---~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~------~~~sn~e~~~~~~~ 282 (395) T protein:vir:10 212 FNKNQLAIAPL---IEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIY------GETADLEKNTLVFE 282 (395) T ss_pred ccccCcceEEc---CCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhc------CcccCHHHHHHHHH Confidence 67666544311 4578899988887765 9999999999999999999999996 35789999999999 Q ss_pred HHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 310 RNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 310 ~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) ++||.|++++|| +||++|..+..++..++|+++.- T Consensus 283 ~~~l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~l 318 (395) T protein:vir:10 283 KFCLTPLLKKIQNELNAKLITQSMYLKDTRIEIVGV 318 (395) T ss_pred HHHHHHHHHHHHHHHHHhhcChhhhcccceecchhh Confidence 999999999998 79999988665555666665432 No 96 >protein:vir:78310 Length: 376 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468642;genbank:gi:157325220;genbank:GeneID:5601655 Probab=100.00 E-value=9e-49 Score=283.97 Aligned_cols=307 Identities=12% Similarity=0.026 Sum_probs=205.1 Q ss_pred CCCCC--CCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhh Q lcl|Aclame:pro 1 MSKKK--GKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYV 78 (344) Q Consensus 1 msk~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~ 78 (344) |+-=. .++.+ .+........+.-..++.++.+++|++||..|+++.+ +.|+.+++-.. ...| T Consensus 1 Mg~f~~l~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~v~~~i~~Ia~~ia-~~p~~~~~~~~----~~~~------ 64 (376) T protein:vir:78 1 MGFFSELFKRNK-----EIEWMWDLDFLEDKTTKVYLKKMALNTCVKHIARTIA-KSDFRLKNGET----SVRD------ 64 (376) T ss_pred CchhhhhhccCC-----ccccccchhhccccchhhhhhhHHHHHHHHHHHHhhc-ccceeeccccc----cccc------ Confidence 65321 11111 1111222233444557788999999999999987654 78887764211 1111 Q ss_pred hhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCceEEEEcCCceEEEEec Q lcl|Aclame:pro 79 KRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAP 157 (344) Q Consensus 79 ~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~y~~~~~~~~~~~~~ 157 (344) . ...++..+||+++++++|++. +.++++.||+|+++.|++.|.+.+++|+.+..+..... ..+.+..++....|++ T Consensus 65 ~-l~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 141 (376) T protein:vir:78 65 K-LYYKLNIRPNTDMSSSSFWEKVIYKLIYDNECLIVLSDTDDFLIADSYVRKEFAFFPDVF--EGVTVKDYRYNRNFSM 141 (376) T ss_pred h-HHHHHhhccccCCCHHHHHHHHHHHHhHcCcEEEEEEeCCCeeeccceeecccceeeeee--eeeeeecceeeeeecc Confidence 1 224566789999999999875 56888999999999999999999999998876543221 1122233444567999 Q ss_pred ccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHH-HHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHh-hcc- Q lcl|Aclame:pro 158 GSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFR-RKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKS-KGR- 234 (344) Q Consensus 158 ~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~-~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~-~g~- 234 (344) +||||+|.... .+ .+....+.+.... ...... ..++.||.++.+++.. .+.+++++.+++++.|++. +|. T Consensus 142 ~evih~~~~~~-~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~g~~ 214 (376) T protein:vir:78 142 DDVIFLEYGNE-RL---SAFTDGMFEDYGE--LFGKMIRAQMRNFQIRGAVNFKM-AGVADKDKQTKLQEYIDKVYASFN 214 (376) T ss_pred ccEEEeccCCC-Cc---hhhhhHHHHHHHH--HHHHHHHHHHhcCCCceeEEEcc-CCCCCHHHHHHHHHHHHHHhcccc Confidence 99999996542 22 2222222222111 111222 2334455555555543 4678999999999999765 444 Q ss_pred ccccccccccCCCccccceeeecccchhH-----HHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHH Q lcl|Aclame:pro 235 NNFKNLFLYAPQGKADGIKIIPLSEVATK-----DDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFV 309 (344) Q Consensus 235 ~n~~~~~vl~~~~~~~gl~~~pl~~~~~d-----~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~ 309 (344) .+.+.++++ +.|++|+|+++++.| +||+|++++++++||++|||||++|| ++++|+|++.+.|+ T Consensus 215 ~~~~~v~~l-----~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVPp~~l~------~~~s~~e~~~~~f~ 283 (376) T protein:vir:78 215 NNEIAIVPQ-----LEGFNYEEFGTTSVNNSQSFDEVKKLRKEMIDYVASILGIPSSLLH------GDMADLSNNMKAYM 283 (376) T ss_pred ccCcceEEc-----CCCceEEeeccCccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhC------CCCCCHHHHHHHHH Confidence 344556667 457889998887755 59999999999999999999999997 35789999999999 Q ss_pred HHHHHHHHHHHH-HHHHhhCCcceeccccccCCC-CC Q lcl|Aclame:pro 310 RNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTD-NG 344 (344) Q Consensus 310 ~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~-~~ 344 (344) ++||.|++++|| ++|++|..+...+-.|++++- .+ T Consensus 284 ~~~l~P~~~~ie~~l~~kll~~~~~~~~~~~~~ll~~ 320 (376) T protein:vir:78 284 EYCIDPLTKKLEDELNAKLFTFSEFLAGEHIKIIHKK 320 (376) T ss_pred HHHHHHHHHHHHHHHHhhhCCcccceecccchhhccc Confidence 999999999998 799999765433333333221 12 No 97 >protein:vir:9641 Length: 395 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795403;genbank:gi:28876176;genbank:GeneID:1257709 Probab=100.00 E-value=4e-48 Score=280.47 Aligned_cols=307 Identities=9% Similarity=-0.033 Sum_probs=206.9 Q ss_pred CCC-----CCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhh Q lcl|Aclame:pro 1 MSK-----KKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSP 75 (344) Q Consensus 1 msk-----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~ 75 (344) |+- +|+.+... . ......++-..++.+|.+++|++||.+|+++.+ ++|+.+++-.+... ..| . T Consensus 1 Mgl~d~~~~~~~~~~~------~-~~~~~~~~~~~~~~~l~~~~v~~~i~~Ia~~ia-~lp~~v~~~~~~~~--~~~--~ 68 (395) T protein:vir:96 1 MGILDFFSFKKSGTLS------D-DDSGSTTSEKLTNVVLKEDALYKCVNYLARIIS-KSTFRIKAPEKLTE--NQK--D 68 (395) T ss_pred CcchhhhcCCCCcccc------c-cccccchhhhcchhhhhhHHHHHHHHHHHHhhc-cceeEEEeCCcccc--ccc--h Confidence 432 11111110 0 111122222346778999999999999987654 78888765322111 111 1 Q ss_pred hhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCceEEEEc--CCceE Q lcl|Aclame:pro 76 IYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVP--SFNEP 152 (344) Q Consensus 76 i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~y~~~--~~~~~ 152 (344) -..++..+||+++++..|++. +.++++.||+|+++.|+..+ ++.+...+.....+..|+.+. .+... T Consensus 69 -----~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 138 (395) T protein:vir:96 69 -----WLYWINTKANPNQSASQFWVEVVQKLLVDGETLIFVIPGKGI-----YVADAFTQDKKLSGNKFKVSRVQGQTYE 138 (395) T ss_pred -----HHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEcCCce-----ecCCccccccccccceeeeeeeccceee Confidence 134566799999999999875 56889999999999998633 333333332233334444443 23335 Q ss_pred EEEecccEEEecCCCCCCCccccccchhhHHHHHHH------HHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHH Q lcl|Aclame:pro 153 TAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLN------ESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRE 226 (344) Q Consensus 153 ~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~------~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~ 226 (344) ..++++||||+|...+....++.+++......+... ..+.++..++|+||+.+.++++.++. ++.+..++ T Consensus 139 ~~~~~~dvih~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 214 (395) T protein:vir:96 139 KIFTFDQVIYLKNDNSDLMLKVESLWEEYGELLGHVINNQKIANQIRFTMTPPKDKVRERAQENSDGG----RQPKSDKD 214 (395) T ss_pred eEeccCceEEecccCCccccccccccchHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeccCch----hhHHHHHH Confidence 679999999999766543444555555444443333 33457889999999999999987643 33344555 Q ss_pred HHHHhhccc--cccccccccCCCccccceeeecccchhHHHHHHHHhhh------HHHHHHHhcCCHHHhcccccccccc Q lcl|Aclame:pro 227 NMVKSKGRN--NFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKAS------AADLLDAHRIPFQLMGGKPENVGSL 298 (344) Q Consensus 227 ~~~~~~g~~--n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~------~~~Ia~~fgVPp~~lg~~~~~~~~~ 298 (344) .|++..+.. +.+.++++ +.|++|++++.++.|+|++|.++++ +++||++|||||++|| +++ T Consensus 215 ~~~~~~~~~~~~~~~v~~l-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~~~eIa~~fgVPp~~l~------~~~ 283 (395) T protein:vir:96 215 FFKRTIEKIRTESVVGIPV-----TANTNYEEYGSKNTGSVKSYVDDIKKLKDQYMAEFAEMLGIPISLLH------GDI 283 (395) T ss_pred HHHHHHHHhhcCCcceEEc-----cCCceeEecccChhhhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhc------CCC Confidence 555544333 33445556 5688999999999999999999887 4899999999999996 457 Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 299 GDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 299 ~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) +|+|++.+.|+++||.||+++|| ++|++|.++..+...+.|++++= T Consensus 284 sn~e~~~~~f~~~~L~P~~~~ie~~l~~~Ll~~~e~~~~~~f~~~~l 330 (395) T protein:vir:96 284 ADNQKNYELLLEGPIESLITNIVDGLEYAIFDKSETLEGSFIKVTGL 330 (395) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhcCceeEeecch Confidence 89999999999999999999999 79999988655545556666432 No 98 >protein:vir:98643 Length: 395 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039921;genbank:gi:126011096;genbank:GeneID:4818479 Probab=100.00 E-value=3.7e-47 Score=275.15 Aligned_cols=313 Identities=9% Similarity=-0.037 Sum_probs=212.0 Q ss_pred CC---CCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhh Q lcl|Aclame:pro 1 MS---KKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIY 77 (344) Q Consensus 1 ms---k~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~ 77 (344) |. +=.+++.... +. ......++-..++.+|.+++|++||.+|+++.+ ++|+.+++-.+... .. T Consensus 1 MGlf~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~v~~~I~~ia~~iA-~lp~~~~~~~~~~~--------~~ 66 (395) T protein:vir:98 1 MGILDFFSFKKSGTL----SD-DDSGSTTSEKLTNVVLKEDALYKCVNYLARIIS-KSTFRLKTPEKLTE--------NQ 66 (395) T ss_pred CcchhhhcCCCcccc----cc-cccchhhhhhcchhhhhhHHHHHHHHHHHHHHh-hCceeEEecCCccc--------cc Confidence 32 1111111111 00 011122222345677899999999999987655 78887764322111 11 Q ss_pred hhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCceEEEEcC--CceEEE Q lcl|Aclame:pro 78 VKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPS--FNEPTA 154 (344) Q Consensus 78 ~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~y~~~~--~~~~~~ 154 (344) + ....++..+||++++++.|++. +.+++++||||++++|+..+ ++.+...+.....+..++.+.. ++-..+ T Consensus 67 ~-~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (395) T protein:vir:98 67 K-DWLYWINTKANPNQSASQFWVEVIQKLLVDGETLIFVIPGKGI-----YVADSFTQDKKISGSQFKVSRVQGQTYEKT 140 (395) T ss_pred c-hHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeCCce-----ecCCcccccccccCcccceeeecCceeeeE Confidence 1 1234567799999999999875 56889999999999998632 2222222222233334444332 233568 Q ss_pred EecccEEEecCCCCCCCccccccchhhHHHHHHH--HHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhh Q lcl|Aclame:pro 155 FAPGSVFHLLEPDINQELYGLPEYLSALNSAWLN--ESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSK 232 (344) Q Consensus 155 ~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~--~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~ 232 (344) |+++||||+|..++....++.+++.....++... .....+..+++.++..+.+++..+....++++.++.++.|++.. T Consensus 141 ~~~~evih~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (395) T protein:vir:98 141 FTFDQVIYLKNDNSDLMSKVESLWEEYGELLGHVINNQKIANQIRFTMIPPKDKVRERAQENSDGGRQSKSDKDFFKRTV 220 (395) T ss_pred ecCccEEEecCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCcHHHHHHHHHHHHHHH Confidence 9999999999776543344555555555555443 33445567899999999999887766677888888899998876 Q ss_pred ccc--cccccccccCCCccccceeeeccc------chhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHH Q lcl|Aclame:pro 233 GRN--NFKNLFLYAPQGKADGIKIIPLSE------VATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKV 304 (344) Q Consensus 233 g~~--n~~~~~vl~~~~~~~gl~~~pl~~------~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~ 304 (344) +.. |.+.++++ +.|++|+|++. +++|+||+|++++++++||++|||||++|| ++++|+|++ T Consensus 221 ~~~~~~~~~v~~l-----~~g~~~~~l~~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVP~~~l~------~~~sn~e~~ 289 (395) T protein:vir:98 221 EKIRTESVVGIPV-----TANTNYEEYGSKNTGAVKSYVDDIKKLKDQYMAEFAEMLGIPISLLH------GDIADNQKN 289 (395) T ss_pred hhhhcCCcceeec-----CCCceeEecccccccccChhHHHHHHHHHHHHHHHHHHhCCCHHHhc------CCcccHHHH Confidence 654 34445556 46888999985 467889999999999999999999999996 457899999 Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 305 AKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 305 ~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~~~ 344 (344) .+.|+++||.||+++|| +||++|.++..+...+.|++++= T Consensus 290 ~~~f~~~tl~P~~~~ie~~l~~kll~~~~~~~g~~f~~~~l 330 (395) T protein:vir:98 290 YELLLEGPIESLITNIVDGLEYAIFDKSETLQGSFIKVTGL 330 (395) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCcceeeehhh Confidence 99999999999999998 79999987654434445555422 No 99 >protein:vir:4089 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510984;swissprot:trembl:q8w606;genbank:gi:17488506;uniprot:Q8W606;genbank:GeneID:1260314 Probab=100.00 E-value=8.2e-47 Score=273.26 Aligned_cols=308 Identities=13% Similarity=0.021 Sum_probs=197.8 Q ss_pred CCCCCCC--CCCCchhhcccccc-ceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhh Q lcl|Aclame:pro 1 MSKKKGK--TLQPAAKKMTASAP-KMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIY 77 (344) Q Consensus 1 msk~~~~--~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~ 77 (344) |.-...- .............. ....+.-...+.+|.+++|++||.+|+++. .+.|+.+++-.+. +. T Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~v~~Ia~~i-a~~p~~~~~~~~~----------~~ 69 (395) T protein:vir:40 1 MGFKSWVSGFFNEEQRTLNLTDTVWCSIPSEKLKELSIKKWAIDSCANKIANTL-SCAEVLTYEKGEE----------VR 69 (395) T ss_pred CchHHHHHhhhcccccccccccchhhccccccchhhhhhhHHHHHHHHHHHHHH-hhCceeeccCCcc----------cc Confidence 5441111 11111010000000 001111123567899999999999998764 5888877542211 11 Q ss_pred hhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceec-cccCceEEEEcCCc--eEE Q lcl|Aclame:pro 78 VKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRR-GVEEDVYWWVPSFN--EPT 153 (344) Q Consensus 78 ~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~-~~~~~~~y~~~~~~--~~~ 153 (344) + ....++..+||+++++..|++. +.+++++||+|+++.++. +++.+...+.. ......|+.+..++ -.. T Consensus 70 ~-~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 142 (395) T protein:vir:40 70 K-KNWYMFNVEANQNQNATEFWKKAIYKLVYDNEALIFMQDEY------IYVADSFTKNDKSLYENTYTEVTLKDLTLKK 142 (395) T ss_pred c-hHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEecCc------eeecCCccccccccccceeeeeeecCceeee Confidence 1 1234667799999999999874 669999999999998875 33333322221 22223344333332 345 Q ss_pred EEecccEEEecCCCCCCCc-cccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHh- Q lcl|Aclame:pro 154 AFAPGSVFHLLEPDINQEL-YGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKS- 231 (344) Q Consensus 154 ~~~~~eViH~r~~~~~~~~-~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~- 231 (344) .|+++||||+|.... .+. ++.+.+......+.. ......+.|+.++.++++.+ ..+++++.+++++.|++. T Consensus 143 ~~~~~evih~r~~~~-~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~ 215 (395) T protein:vir:40 143 EFKESEVLHLTLNNE-SIKSIIDGFYLLYGDLLTA-----AVNKYKKLNSRKIIVKLKAM-FGQTPEAEEKLRLMLSERM 215 (395) T ss_pred eeccccEEEeecCCC-CccccchhHHHHHHHHHHH-----HHHHHHhcCCCCceEEEecc-cCCCHHHHHHHHHHHHHHH Confidence 789999999995432 221 122222222222222 22334456666666666544 568999999999999764 Q ss_pred hc-cccccccccccCCCccccceeeecccchhHHHHHHHHhhhH---HHHHHHhcCCHHHhccccccccccccHHHHHHH Q lcl|Aclame:pro 232 KG-RNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASA---ADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKV 307 (344) Q Consensus 232 ~g-~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~---~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~ 307 (344) .| .+|+++++++ ++|++|+|++++++|+||+|+++++. ++||++|||||++|| ++++|+|++.+. T Consensus 216 ~~~~~~~~~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~Ia~~fgVPp~~l~------~~~sn~e~~~~~ 284 (395) T protein:vir:40 216 KKFLAEGDSALPV-----EDGMEIDELAGDSKIAESRDIKKMIDDVFEMVANSFNIPLGLAK------GDTVGLSEQVNS 284 (395) T ss_pred HHhhccCCceeec-----CCCceEEeccCChhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhc------CCCcCHHHHHHH Confidence 44 3678888888 56889999999999999999999985 799999999999996 357899999999 Q ss_pred HHHHHHHHHHHHHH-HHHHhhCCcceeccccccCCC-------CC Q lcl|Aclame:pro 308 FVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTD-------NG 344 (344) Q Consensus 308 f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y~l~~~-------~~ 344 (344) |+++||.|++++|| +||++|.++..+...|.++|| |- T Consensus 285 f~~~~L~P~~~~ie~~l~~kLl~~~~~~~g~~i~fd~~~ll~~d~ 329 (395) T protein:vir:40 285 FLMFSINPIAEMFTDEGNRKFYGRDSVLERTYMKLDTTRIKVQDI 329 (395) T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhcCCceEEEechhhhccCH Confidence 99999999999998 799999775433223333333 21 No 100 >protein:vir:93867 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764264;genbank:gi:115315577;genbank:GeneID:5141561 Probab=100.00 E-value=3.8e-45 Score=264.09 Aligned_cols=291 Identities=14% Similarity=0.061 Sum_probs=197.9 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) |.-=.+.+.-.... ..........|.+....+...+|++||..|+++.+ ++|+.+++..+.............+. T Consensus 1 Mg~f~~~~~f~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~i~~Ia~~iA-~lp~~~~~~~~~~~~~~~~~~~~~~~- 75 (378) T protein:vir:93 1 MNLFGKVVSFSRGK---LNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEIT-KVEFNHVKYKKSDVGSDTLISMAGSD- 75 (378) T ss_pred Cccchhhhhhhccc---cCCCcceeeecccchhHHHHHHHHHHHHHHHhhhh-hCceeeEEEcccccccccccccccch- Confidence 65443333211111 11222223345666666777789999999987755 78876544221111000000001111 Q ss_pred hhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECC-CCceEEEEEecCcceeccccCceEEEEcCCceEEEEecc Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYST-TGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPG 158 (344) Q Consensus 81 ~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~-~G~~~~L~pl~~~~v~~~~~~~~~y~~~~~~~~~~~~~~ 158 (344) -..++..+||+++++++|++. +.+++++||+|++++|+. .|+++.|+|.. ...+|+++ T Consensus 76 l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~i~~~~~~~~g~~~~l~~~~--------------------~~~~~~~~ 135 (378) T protein:vir:93 76 LDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGELLDLLFAD--------------------DKKEYKTE 135 (378) T ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCceEEEEEecC--------------------CeeEeccc Confidence 124556689999999999874 568999999999988774 36776666532 23468899 Q ss_pred cEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHH----Hhhcc Q lcl|Aclame:pro 159 SVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMV----KSKGR 234 (344) Q Consensus 159 eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~----~~~g~ 234 (344) ||||+|.+ .++..|.|++..+++++. ++|++| .++|+|++++ .+++++.+++++.|+ +..++ T Consensus 136 diih~r~~--~~~~~~~s~l~~~~~~i~----------~~~~~~-~~~g~l~~~~-~l~~~~~~~~~~~~~~~~~~~~~~ 201 (378) T protein:vir:93 136 ELVRLTSP--FYINEDTSILDNALASIQ----------TKLEQG-KLRGLLKINA-FLDIDNTQEYREKALTTIKNMQEG 201 (378) T ss_pred eeEEecCc--cccchhhHHHHHHHHHHH----------HHHhcC-cccceeeeCC-cCCHHHHHHHHHHHHHHHHHhhcc Confidence 99999964 467779999887776552 456666 5899999864 678877776666664 44577 Q ss_pred ccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHH Q lcl|Aclame:pro 235 NNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELI 314 (344) Q Consensus 235 ~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~ 314 (344) +|++++++| +.|++|+|++.+++|+|+ +.+++++++||++|||||++|+. ++.|++...|+++||. T Consensus 202 ~~~~~~~~l-----~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~g--------~~~e~~~~~f~~~tl~ 267 (378) T protein:vir:93 202 SSYNGLTPV-----DNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG--------TATQEQQIYFYNSTII 267 (378) T ss_pred cccccceEc-----CCCceEEEccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhcC--------CcHHHHHHHHHHHHHH Confidence 889999999 458899999999999997 66789999999999999999842 2348999999999999 Q ss_pred HHHHHHH-HHHHhhCCccee-------------ccccccCCCCC Q lcl|Aclame:pro 315 PLQDRIR-EINGWLGQEVIR-------------FKNYSLDTDNG 344 (344) Q Consensus 315 P~~~~ie-eln~~L~~~~~~-------------f~~y~l~~~~~ 344 (344) |++++|| +||++|.++..+ |+.-.|...|= T Consensus 268 P~~~~ie~~l~~kLl~~~er~~~~~~~~~~~~~fd~~~l~~~d~ 311 (378) T protein:vir:93 268 PLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATL 311 (378) T ss_pred HHHHHHHHHHHhhcCChhHhhhhhhcccccceeeccchhhhcCH Confidence 9999998 799999875322 22111211111 No 101 >protein:vir:1661 Length: 378 # NCBI annotation: unknown # Family: family:all:2379 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044950;genbank:gi:9629657;genbank:GeneID:1261302 Probab=100.00 E-value=2.5e-44 Score=259.64 Aligned_cols=291 Identities=14% Similarity=0.062 Sum_probs=195.8 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) |.-=.+-+.-.... ..........|.+...++...+|++||.+|+++.+ ++|+.+++..+..+.......+..+. T Consensus 1 Mg~f~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~i~~Ia~~iA-~l~~~~~~~~~~~~~~~~~~~~~~~~- 75 (378) T protein:vir:16 1 MNLFGKVVSFSRGK---LNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEIT-KVEFNHVKYKKSDVGSDTLISMAGSD- 75 (378) T ss_pred Cccchhhhhhhccc---ccCCcceeeecccchhhHHHHHHHHHHHHHHhhhh-hCceeEEEEcccccccccccccccch- Confidence 43222221111111 11112223345666666777789999999987755 78876544322111000000001111 Q ss_pred hhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCC-CceEEEEEecCcceeccccCceEEEEcCCceEEEEecc Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTT-GKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPG 158 (344) Q Consensus 81 ~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~-G~~~~L~pl~~~~v~~~~~~~~~y~~~~~~~~~~~~~~ 158 (344) -..++..+||+++++++|++. +.+++++||+|++++|++. |+++.|+|.. ....|+++ T Consensus 76 l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~d~~~g~~~~l~~~~--------------------~~~~~~~~ 135 (378) T protein:vir:16 76 LDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGELLDLLFAD--------------------DKKEYKPE 135 (378) T ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCceEEEEEecC--------------------CeeEeccc Confidence 234556789999999999874 5688999999999998864 6776666532 23457889 Q ss_pred cEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHH----Hhhcc Q lcl|Aclame:pro 159 SVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMV----KSKGR 234 (344) Q Consensus 159 eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~----~~~g~ 234 (344) ||||+|.+ .++..|.|++..+++++. +++++| .++|+|+.++ .+++++.+++++.|+ +..++ T Consensus 136 diih~r~~--~~~~~~~s~l~~~~~~i~----------~~~~~~-~~~g~l~~~~-~l~~~~~~~~~~~~~~~~~~~~~~ 201 (378) T protein:vir:16 136 ELVRLTSP--FYINEDTSILDNALASIQ----------TKLEQG-KLRGLLKINA-FLDIDNTQEYREKALTTIKNMQEG 201 (378) T ss_pred ceEEecCc--cCccchhHHHHHHHHHHH----------HHHhcC-ccceeeEeCC-cCCHHHHHHHHHHHHHHHHHhhcc Confidence 99999964 457778999888777653 334444 6899999864 577776666666554 44678 Q ss_pred ccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHH Q lcl|Aclame:pro 235 NNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELI 314 (344) Q Consensus 235 ~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~ 314 (344) +|++++++| +.|++|++++++++|+|+.+ .++++++||++|||||.+|+. ++.|++.+.|+++||. T Consensus 202 ~~~g~~~vl-----~~g~~~~~l~~~~~~~~~~~-~~~~~~~Ia~~fgVPp~~l~g--------~~~e~~~~~f~~~tl~ 267 (378) T protein:vir:16 202 SSYNGLTPV-----DNKTEIVELKKDYSVLNKDE-IDLIKSELLTGYFMNENILLG--------TASQEQQIYFYNSTII 267 (378) T ss_pred cccccceEc-----CCCceEEEccCChhhhhHHH-HHHHHHHHHHHhCCCHHHhcC--------CchHHHHHHHHHHHHH Confidence 899999999 45889999999999999854 679999999999999999842 3458999999999999 Q ss_pred HHHHHHH-HHHHhhCCcceeccc------cccCCCCC Q lcl|Aclame:pro 315 PLQDRIR-EINGWLGQEVIRFKN------YSLDTDNG 344 (344) Q Consensus 315 P~~~~ie-eln~~L~~~~~~f~~------y~l~~~~~ 344 (344) ||+++|| +||++|.++..+-.. .+++|+-- T Consensus 268 P~~~~ie~~l~~kLl~~~e~~~~~~~~~~~~~~f~~~ 304 (378) T protein:vir:16 268 PLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQ 304 (378) T ss_pred HHHHHHHHHHHhhcCChhhhhhhhhcccccceeeccc Confidence 9999998 799999876432111 12222211 No 102 >protein:vir:94002 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764318;genbank:gi:115315632;genbank:GeneID:5176589 Probab=100.00 E-value=3.7e-44 Score=258.68 Aligned_cols=291 Identities=14% Similarity=0.062 Sum_probs=191.9 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) |--=.+-+.-......+. .....++.+-...+...+|++||.+|+++.+ ++|+.++...+.-.........+.+. T Consensus 1 Mg~f~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~v~~IA~~iA-~lp~~~~~~~~~~~~~~~~~~~~~~~- 75 (378) T protein:vir:94 1 MNLFGKVVSFSRGKLNND---TQRVTAWQNEAVEYTSAFVTNIHNKIANEIT-KVEFNHVKYKKSDVGSDTLISMAGSD- 75 (378) T ss_pred CCccccchhcccccccCC---cceeeeeccchhHHHHHHHHHHHHHHHhhhh-hCceeeEEEcccCcccccccccccch- Confidence 322211111100000000 1111223333334556688999999987755 77776543221100000000001111 Q ss_pred hhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEEC-CCCceEEEEEecCcceeccccCceEEEEcCCceEEEEecc Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYS-TTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPG 158 (344) Q Consensus 81 ~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~-~~G~~~~L~pl~~~~v~~~~~~~~~y~~~~~~~~~~~~~~ 158 (344) -..++..+||+++++++|++. +.+++++||+|++++|+ ..|+++.++|.. ...+|+++ T Consensus 76 l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~~~~~g~~~~l~p~~--------------------~~~~~~~~ 135 (378) T protein:vir:94 76 LDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD--------------------DKKEYKPE 135 (378) T ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeeCCCceEEEEEecC--------------------CeeEeeee Confidence 124566789999999999875 56889999999987655 457887777632 22467899 Q ss_pred cEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHH----HHhhcc Q lcl|Aclame:pro 159 SVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENM----VKSKGR 234 (344) Q Consensus 159 eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~----~~~~g~ 234 (344) ||||+|.+ .++..|+||+..+++++.. ++++| .++|+|++++ .+++++.+++++.| ++..++ T Consensus 136 diiH~~~~--~~~~~g~s~l~~~~~~i~~----------~~~~~-~~~gil~~~~-~l~~~~~~~~~~~~~~~~~~~~~~ 201 (378) T protein:vir:94 136 ELVRLTSP--FYINEDTSILDNALASIQT----------KLEQG-KLRGLLKINA-FLDIDNTQEYREKALTTIKNMQEG 201 (378) T ss_pred eeEEecCc--CCccchhHHHHHHHHHHHH----------HHhcc-cccceeeeCC-cCCHHHHHHHHHHHHHHHHHhhcc Confidence 99999965 4677899999988887643 34454 6899999864 67877766666555 344577 Q ss_pred ccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHH Q lcl|Aclame:pro 235 NNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELI 314 (344) Q Consensus 235 ~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~ 314 (344) +|++++++| +.|++|+|++.+++|+|+ +.+++++++||++|||||++|+. ++.|++.+.|+++||. T Consensus 202 ~~~g~~~vl-----~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVP~~~l~~--------~~se~~~~~f~~~tL~ 267 (378) T protein:vir:94 202 SSYNGLTPV-----DNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG--------TASQEQQIYFYNSTII 267 (378) T ss_pred cccccceec-----CCCceEEEccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhcC--------ChHHHHHHHHHHHHHH Confidence 889999999 458899999999999997 56789999999999999999952 2348899999999999 Q ss_pred HHHHHHH-HHHHhhCCcceecccc------ccCCCCC Q lcl|Aclame:pro 315 PLQDRIR-EINGWLGQEVIRFKNY------SLDTDNG 344 (344) Q Consensus 315 P~~~~ie-eln~~L~~~~~~f~~y------~l~~~~~ 344 (344) ||+++|| +||++|.++..|-..+ +++|+-- T Consensus 268 P~~~~ie~~l~~~Ll~~~er~~g~~~~~~~~~~f~~~ 304 (378) T protein:vir:94 268 PLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQ 304 (378) T ss_pred HHHHHHHHHHHhhcCChhHhhhhhhcccccceeecch Confidence 9999999 7999998754321111 1222211 No 103 >protein:vir:4698 Length: 251 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061630;genbank:gi:9635717;genbank:GeneID:1262980 Probab=100.00 E-value=9e-43 Score=251.11 Aligned_cols=234 Identities=15% Similarity=0.178 Sum_probs=172.1 Q ss_pred CC---CCCCCCCCCchhhccccccceEEEEc-----CCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhh Q lcl|Aclame:pro 1 MS---KKKGKTLQPAAKKMTASAPKMEAFTF-----GEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHH 72 (344) Q Consensus 1 ms---k~~~~~~~~~~~~~~~~~~~~~~~~~-----~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~ 72 (344) |. |+.+|..++..............++- -++..+|.+++|++||.+|+++. .++|+.+++-.+ ....| T Consensus 1 MglF~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~i-A~lp~~~~~~~~---~~~~~ 76 (251) T protein:vir:46 1 MGIFYKNEKRDLQYNEDDLQMMVQTLPSFQGTKLRQYKDIEAIRHSDIFTAVMMIASDL-ARMPIRVTVNGQ---INYSD 76 (251) T ss_pred CCccccccccccCCCccchhhhhhhhccccCcCcceechhhhhccHHHHHHHHHHHHhH-hhCceEEeeCcc---ccccc Confidence 54 33333332222111111111111111 13567899999999999998765 488888764221 11111 Q ss_pred hhhhhhhhhhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc--eEEEEc-- Q lcl|Aclame:pro 73 SSPIYVKRNILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--VYWWVP-- 147 (344) Q Consensus 73 ~~~i~~~~~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~--~~y~~~-- 147 (344) . -..++..+||+++++++|++. +.+++++||||++++|+..|+|++|+|++|.+|++..+.+ .+|.+. T Consensus 77 ~-------~~~ll~~~Pn~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~ 149 (251) T protein:vir:46 77 R-------IVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRI 149 (251) T ss_pred h-------HHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCceEEEEECCCCcEEEEEEEe Confidence 1 123455789999999999865 5689999999999999999999999999999999876543 233321 Q ss_pred ---CCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHH Q lcl|Aclame:pro 148 ---SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEML 224 (344) Q Consensus 148 ---~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~l 224 (344) ..+....|+++||||+|.++ .|+++|+||+.++++++.++.++++|..++|+||++|+|+|++++...++++++++ T Consensus 150 ~~~~~g~~~~~~~~diiH~r~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~~e~~~~~ 228 (251) T protein:vir:46 150 DSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRA 228 (251) T ss_pred ccCCcceeEEECCccEEEecCcC-CCCeeecCHHHHHHHHHHHHHHHHHHHHHHHHccCCCcEEEEeCCCCCCHHHHHHH Confidence 34567889999999999886 57999999999999999999999999999999999999999998766678889999 Q ss_pred HHHHHH-hhccccccccccccCCCccc Q lcl|Aclame:pro 225 RENMVK-SKGRNNFKNLFLYAPQGKAD 250 (344) Q Consensus 225 k~~~~~-~~g~~n~~~~~vl~~~~~~~ 250 (344) ++.|++ +.|.+|+|++.+. +. + T Consensus 229 ~~~~~~~~~g~~n~g~~~~g---m~-~ 251 (251) T protein:vir:46 229 REEFPKVLVELNKLGKLSYS---MN-Q 251 (251) T ss_pred HHHHHHHhcCcccccccccc---cC-C Confidence 999976 5677999997652 22 1 No 104 >protein:vir:858 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047117;genbank:gi:9630570;genbank:GeneID:1261758 Probab=100.00 E-value=4.1e-42 Score=247.47 Aligned_cols=291 Identities=14% Similarity=0.070 Sum_probs=189.6 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) |+.=.+-...-... ........+++.+...++..++|++||.+|+.+.+ ++|+.+++..+-.... .....+..-. T Consensus 1 M~~f~k~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~v~~ia~~iA-~lp~~~~~~~~~~~~~-~~~~~~~~~~ 75 (378) T protein:vir:85 1 MNLFGKVVSFSRGK---LNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEIT-KVEFNHVKYKKSDVGS-DTLISMAGSD 75 (378) T ss_pred Cchhhhhhhhhhcc---cccCCcceeeeeccchhhhhHHHHHHHHHHHHhHh-hCceeEEEEecccccc-ccccccccch Confidence 76522211100000 11122345566666667888899999999987654 8888765322110000 0000001111 Q ss_pred hhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEEE-ECCCCceEEEEEecCcceeccccCceEEEEcCCceEEEEecc Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEKR-YSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPG 158 (344) Q Consensus 81 ~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i~-r~~~G~~~~L~pl~~~~v~~~~~~~~~y~~~~~~~~~~~~~~ 158 (344) -..++..+||++|++++||+. +.+++++||||++++ ++..|++..+++. .++ .+|.++ T Consensus 76 l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~~~~~------------------~~~--~~~~~~ 135 (378) T protein:vir:85 76 LDEVLNWSYKGEHNSMEFWQKVIKKLLCTRYVDLYPIFDSETGELLDLLFA------------------NDK--KEYKPE 135 (378) T ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEeecCCCceEEEEEec------------------CCC--EEEccc Confidence 234567799999999999875 568899999999864 4555655443322 122 357789 Q ss_pred cEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHH----Hhhcc Q lcl|Aclame:pro 159 SVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMV----KSKGR 234 (344) Q Consensus 159 eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~----~~~g~ 234 (344) ||||++.+...++ +.+.+..+.+.+ ..++++| .|+|+|++++ .+++++.+++++.|+ +..++ T Consensus 136 dvih~~~~~~~~~--~~~~~~~a~~~~----------~~~~~~~-~~~g~l~~~~-~l~~~~~~~~~~~~~~~~~~~~~~ 201 (378) T protein:vir:85 136 ELVRLVSPFYINE--DTSILDNALASI----------QTKLEQG-KLRGLLKINA-FLDIDNTQEYREKALATIKNMQEG 201 (378) T ss_pred ceEEEecCcCccc--hhhHHHHHHHHH----------HHHHhcC-CcceEEEeCC-cCCHHHHHHHHHHHHHHHHHhhcc Confidence 9999985432222 333333333322 2345555 7899999864 688888777777764 34577 Q ss_pred ccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHH Q lcl|Aclame:pro 235 NNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELI 314 (344) Q Consensus 235 ~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~ 314 (344) +|++++++| +.|++|++++++++++|+ +.+++++++||++|||||++|+. ++.|++.+.|+++||. T Consensus 202 ~~~g~~~vl-----~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~--------s~~e~~~~~f~~~tL~ 267 (378) T protein:vir:85 202 SSYNGLTPV-----DNKTEIVELKKDYSVLNK-DEIELIKSELLTGYFMNENILLG--------TATQEQQIYFYNSTII 267 (378) T ss_pred cccccceec-----CCCceEEeccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhcC--------CchHHHHHHHHHHHHH Confidence 899999999 458899999999999996 66789999999999999999951 3458999999999999 Q ss_pred HHHHHHH-HHHHhhCCcceecccc------ccCCCCC Q lcl|Aclame:pro 315 PLQDRIR-EINGWLGQEVIRFKNY------SLDTDNG 344 (344) Q Consensus 315 P~~~~ie-eln~~L~~~~~~f~~y------~l~~~~~ 344 (344) ||+++|| +||++|.++..+...| +++|+.- T Consensus 268 P~~~~ie~~l~~kLl~~~er~~~~~~~~~~~~~f~~~ 304 (378) T protein:vir:85 268 PLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQ 304 (378) T ss_pred HHHHHHHHHHHhhcCChhhhhhhhhccccceeeecch Confidence 9999999 7999998754332211 2333322 No 105 >protein:vir:94869 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762515;genbank:gi:115304214;genbank:GeneID:5141182 Probab=100.00 E-value=4.5e-42 Score=247.28 Aligned_cols=291 Identities=13% Similarity=0.025 Sum_probs=191.5 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) |+.=.+....... ....+..+.+++.+...++..++|++||.+|+++.+ ++|+.+++..+.-........+..+. T Consensus 1 M~if~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ia~~iA-~lp~~~~~~~~~~~~~~~~~~~~~~~- 75 (378) T protein:vir:94 1 MNLFGKVVSFSRG---KLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEIT-KVEFNHVKYKKSDVGSDTLISMAGSD- 75 (378) T ss_pred CchhHHhHhhhhc---ccccCcceeeeeecchhhhhhHHHHHHHHHHHHhHh-hCceeeeeecccccccccccccccch- Confidence 6654433322111 111223456666666666778899999999987754 78876644221110000000000111 Q ss_pred hhHHHhcccCCCCCHHHHHHH-HHHHHhcCCeEEEE-EECCCCceEEEEEecCcceeccccCceEEEEcCCceEEEEecc Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRF-VLDFLVFGNAFLEK-RYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPG 158 (344) Q Consensus 81 ~~~~~~~~pn~~~~~~~f~~~-~~~~ll~Gnay~~i-~r~~~G~~~~L~pl~~~~v~~~~~~~~~y~~~~~~~~~~~~~~ 158 (344) -..++..+||+++++..||+. +.++++.||||+++ .++..|++..+++. .++ .+|+++ T Consensus 76 l~~lLn~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~~~~~------------------~~~--~~~~~~ 135 (378) T protein:vir:94 76 LDEVLNWSSKGERNSMEFWQKVIKKLLTTRYIDLYPIFDSETGELLDLLFA------------------NDK--KEYKPE 135 (378) T ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEEe------------------cCc--EEechh Confidence 124566789999999999875 56889999999985 45666776655442 122 457899 Q ss_pred cEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHH----HHHHHHHhhcc Q lcl|Aclame:pro 159 SVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEM----LRENMVKSKGR 234 (344) Q Consensus 159 eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~----lk~~~~~~~g~ 234 (344) ||||+|.+...++ +.+++..+.+++. ..+++| .++|+|+.+. .+++++.++ +++.|++..++ T Consensus 136 dvih~~~~~~~~~--~~~~~~~~~~~~~----------~~~~~~-~~~g~l~~~~-~l~~~~~~~~~e~~~~~~~~~~~~ 201 (378) T protein:vir:94 136 ELVRLTSPFYINE--DTSILDNALASIQ----------TKLEQG-KLRGLLKINA-FLDIDNTQEYREKALATIKNMQEG 201 (378) T ss_pred ceeeecCcCCccc--chhHHHHHHHHHH----------HHHhhC-CcccceeeCC-cCCHHHHHHHHHHHHHHHHHhhcc Confidence 9999996543332 4455555544332 334454 6889999864 678766555 44555556678 Q ss_pred ccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHH Q lcl|Aclame:pro 235 NNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELI 314 (344) Q Consensus 235 ~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~ 314 (344) .|++++++| ++|++|++++++++++|+ +.+++++++||++|||||++|+. +..|++.+.|+++||. T Consensus 202 ~n~~~~~vl-----~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgvPp~~l~g--------~~~e~~~~~f~~~tl~ 267 (378) T protein:vir:94 202 SSYNGLTPV-----DNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG--------TATQEQQIYFYNSTII 267 (378) T ss_pred cccccceec-----cCCceEEEccCChHHhhH-HHHHHHHHHHHHHhCCCHHHhcC--------CchHHHHHHHHHHHHH Confidence 889999999 468899999999999996 66789999999999999999852 2237889999999999 Q ss_pred HHHHHHH-HHHHhhCCcceeccc------cccCCC--CC Q lcl|Aclame:pro 315 PLQDRIR-EINGWLGQEVIRFKN------YSLDTD--NG 344 (344) Q Consensus 315 P~~~~ie-eln~~L~~~~~~f~~------y~l~~~--~~ 344 (344) ||+++|| +||++|.++..+... .+++|+ .= T Consensus 268 P~~~~ie~~l~~~Ll~~~e~~~g~~~~~~~~~~f~~~~l 306 (378) T protein:vir:94 268 PLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLF 306 (378) T ss_pred HHHHHHHHHHHhhcCChhHhhhhhhhcccceeEeecchh Confidence 9999998 799999765322111 122222 21 No 106 >protein:vir:5249 Length: 437 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852754;genbank:gi:31544029;interpro:IPR006445;uniprot:Q7Y5U6;genbank:GeneID:2753529 Probab=99.53 E-value=8.3e-15 Score=97.78 Aligned_cols=324 Identities=11% Similarity=0.025 Sum_probs=160.9 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhh-hhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSS-PIYVK 79 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~-~i~~~ 79 (344) |..==.-.. ... ...+......++++.|.+. . .+.+..++...-.+..-++... ....|.--...+ -+..+ T Consensus 1 ~~~~D~~~~--~~~-~~g~~~~~~~~~~~~~~~~-~---~~~l~a~Y~~~~l~~~~vd~~a-~d~~r~~~~i~~~d~~~~ 72 (437) T protein:vir:52 1 MKFFDGIKS--LAL-KLGSKQEQTYYSPSLSLTD-D---LVQLEALWRDNWIANKVCIKRP-EDMVRNWREIYSNDLNSK 72 (437) T ss_pred CchhhhhHh--HHh-cCCCccccceeecCccccc-c---HHHHHHHHHhCchhhHHhhcch-HHhhcCCceEecCCCCHH Confidence 110000000 000 0000001122334433221 1 1111111111111111111100 000000000000 00000 Q ss_pred hhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCC---------CceEEEEEecCcceecccc----------- Q lcl|Aclame:pro 80 RNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTT---------GKVIRLETSPAKYTRRGVE----------- 139 (344) Q Consensus 80 ~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~---------G~~~~L~pl~~~~v~~~~~----------- 139 (344) .- -.+...-..+--+..+...+...-++|+||+++.+++. |.++.|.+++++.+.+... T Consensus 73 ~~-~~~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~~d~~~~~~pl~~~~~~~~~~v~~~~~v~~~~~~~~dp~s~~fg 151 (437) T protein:vir:52 73 QL-DLFTKFERSLKLRETLTKALQWSSLYGSVGLLVVTDSQNTSAPLKPTERLKRLIILPKWKISPTGTKDDDVLSPNFG 151 (437) T ss_pred HH-HHHHHHHHhhcHHHHHHHHHHhcccccceEEEEEecCCCcccccccCCceeEEEEechhhccccccccccccccccC Confidence 00 00000000011123334444445589999999998863 7889999999988764211 Q ss_pred CceEEEEcCCceEEEEecccEEEecCC---CCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCC--C Q lcl|Aclame:pro 140 EDVYWWVPSFNEPTAFAPGSVFHLLEP---DINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTD--A 214 (344) Q Consensus 140 ~~~~y~~~~~~~~~~~~~~eViH~r~~---~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~--~ 214 (344) ...+|.+.+++..+.+.++.||||.+. -+.+.++|+|.++.+.+.|.....+......++.+...+ ++++++ . T Consensus 152 ~p~~y~v~~~~~~~~iH~SRii~~~~~~~~~~~~~~~G~s~le~~~~~i~~~~~~~~~~~~l~~~~~~~--v~k~~~l~~ 229 (437) T protein:vir:52 152 RYSEYSILGGSQSITVHHSRLIILNANDAPLSDNDIWGVSDLEKIIDVLKRFDSASVNVGDLIFESKID--IFKIAGLSD 229 (437) T ss_pred cceEEEEecCCcceeEccceeEEecCccCCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCC--ceecchHHH Confidence 113677877777788999999999742 234677899999999999999888888888877765444 445543 2 Q ss_pred CCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhcccccc Q lcl|Aclame:pro 215 VQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPEN 294 (344) Q Consensus 215 ~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~ 294 (344) .++....+.+.+.++......+.+++++++.+ -+++.++.+..+ +-+......++||++++||..+|.... T Consensus 230 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-----~~~e~~~~~~sg--l~~~l~~~~~~iaaa~~iP~t~L~G~s-- 300 (437) T protein:vir:52 230 KIAAGMENEVASVISAVQEIKSATNSLLLDAE-----NEYDRKELTFTG--LKDLLTEFRNAVAGAADMPVTILFGQS-- 300 (437) T ss_pred HhcCCcHHHHHHHHHHHHHhcCCCceEEEcCC-----cceEEEecCcCC--HHHHHHHHHHHHHHHhcCchhhhcCcC-- Confidence 24433344555555543333455677777542 245555544433 234455677899999999998885432 Q ss_pred ccccccHHHHHHHHHH-------HHHHHHHHHHHH-HHHhh-CC--cceeccccccC-CCCC Q lcl|Aclame:pro 295 VGSLGDIEKVAKVFVR-------NELIPLQDRIRE-INGWL-GQ--EVIRFKNYSLD-TDNG 344 (344) Q Consensus 295 ~~~~~n~e~~~~~f~~-------~~l~P~~~~iee-ln~~L-~~--~~~~f~~y~l~-~~~~ 344 (344) .++.++.+...+.||. ..|.|.++++-+ |-+.. |. ..|.|+...|. .++- T Consensus 301 ~~Glasge~D~~~yyd~i~~~Qe~~l~p~le~l~~~i~~~~~g~~~~~~~~~f~pL~~~s~k 362 (437) T protein:vir:52 301 VSGLASGDEDIQNYHEAIRRLQETRLRPIFEIIDPLICNELFGGLPADWWFEFVPLTTVKQE 362 (437) T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCcCCcCHH Confidence 3445667778888886 456666665433 22222 21 12333322332 2222 No 107 >protein:vir:77981 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467939;genbank:gi:157265380;genbank:GeneID:5600471 Probab=99.27 E-value=4.6e-12 Score=82.73 Aligned_cols=311 Identities=12% Similarity=-0.006 Sum_probs=164.0 Q ss_pred CCCCCCCCCCCchhhccc--cccc--------eEEE-----EcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHH Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTA--SAPK--------MEAF-----TFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKS 65 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~--~~~~--------~~~~-----~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~ 65 (344) |+||++|+.+..+...+. ++.. .... +..++.++|+.... +.++ ..+ T Consensus 1 m~kk~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iLr~~~~----------------~~ly--~~m 62 (448) T protein:vir:77 1 MAKRGRKPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELLQGKDG----------------LLVY--HKM 62 (448) T ss_pred CCCCCCCCcccCCcccccchhhhhhhccchhhhcccccccccccchhHhhccccc----------------hHHH--HHH Confidence 999998876554432211 1100 0000 11112223322110 1111 112 Q ss_pred hhcchhhhhhhhhhhhhHHH---hcccCC------------------------CCCHHHHHHHHHHHHhcCCeEEEEEEC Q lcl|Aclame:pro 66 LRAAVHHSSPIYVKRNILAS---TFIPHP------------------------WLSQQDFSRFVLDFLVFGNAFLEKRYS 118 (344) Q Consensus 66 ~~~~~~~~~~i~~~~~~~~~---~~~pn~------------------------~~~~~~f~~~~~~~ll~Gnay~~i~r~ 118 (344) ..++|..+++..++.-++. ...|+. ..++..+-.-+.+.+.+|.+.++++.. T Consensus 63 -~~D~hi~s~l~~Rk~av~~~~w~v~p~~~~~~d~~~ae~v~~~l~~~~~~~~~~~f~~~i~~~lda~~~G~s~~Eivw~ 141 (448) T protein:vir:77 63 -LSDGTVKNALNYIFGRIRSAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIYENAYIYGMAAGEIVLT 141 (448) T ss_pred -hhChHHHHHHHHHHHHHhcCCceEecCCCCHHHHHHHHHHHHHhhchhhhhccCCHHHHHHHHHHhhhhcceeEEEEEe Confidence 2245555555444333222 112221 112222333345777899999999874 Q ss_pred --CCCc--eEEEEEecCccee---ccccCceEEEEcCC--------ceEEEEecccEEEecCCCCCCCccccccchhhHH Q lcl|Aclame:pro 119 --TTGK--VIRLETSPAKYTR---RGVEEDVYWWVPSF--------NEPTAFAPGSVFHLLEPDINQELYGLPEYLSALN 183 (344) Q Consensus 119 --~~G~--~~~L~pl~~~~v~---~~~~~~~~y~~~~~--------~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~ 183 (344) .+|. +..|.+.++..++ ...++...+....+ .....++..-++|.... .....+|.+.+..+.. T Consensus 142 ~~~dg~~~~~~l~~r~~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~-~~g~p~g~gLlr~~~w 220 (448) T protein:vir:77 142 LGADGKLILDKIVPIHPFNIDEVLYDEEGGPKALKLSGEVKGGSQFVNGLEIPIWKTVVFLHN-DDGSFTGQSALRAAVP 220 (448) T ss_pred ecCCCceeeccccccCCCccceeeeecCCceEEEecCCcccccccCCCccccccceEEEEecC-CcCCcccchHHHHHHH Confidence 3454 4467777775443 33333333322221 12234567778888654 3445789999999999 Q ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEeCCC-CCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchh Q lcl|Aclame:pro 184 SAWLNESATLFRRKYYENGAHAGYIMYVTDA-VQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVAT 262 (344) Q Consensus 184 ~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~-~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~ 262 (344) ....-....++...|.+.-+.|--+.+++.+ .-++++++.+.+...+..++.+++. |+ +.|++++=+..... T Consensus 221 ~~~fK~~~~~~w~~f~E~yG~P~~vgky~~ga~~~~~~~~~l~~av~~i~~g~~a~~--ii-----P~g~~ie~~ea~~~ 293 (448) T protein:vir:77 221 HWLAKRALILLINHGLERFMIGVPTLTIPKSVRQGTKQWEAAKEIVKNFVQKPRHGI--IL-----PDDWKFDTVDLKSA 293 (448) T ss_pred HHHHHHhhHHHHHHHHHHcCCceeEEecCCCCCCCHHHHHHHHHHHHHHhcCCceEE--Ee-----cCCceEEEEecCCC Confidence 9999999999999999999999888887643 3356777888877777665555542 33 23444333333333 Q ss_pred HHHHHHHHhhhHHHHHHHhcCCHHHhcccc--c-cccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccc-- Q lcl|Aclame:pro 263 KDDFFNIKKASAADLLDAHRIPFQLMGGKP--E-NVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKN-- 336 (344) Q Consensus 263 d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~--~-~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~-- 336 (344) ...+.+.-++--++|+++. +|.+- + ++++++...+.........+.-.++.|+ .||+.|....+.+|. T Consensus 294 ~~~~~~~i~~~d~~Isk~i------LGqtlTs~~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~Li~~l~~lNfg~ 367 (448) T protein:vir:77 294 MPDAIPYLTYHDAGIARAL------GIDFNTVQLNMGVQAVNIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLPNWPG 367 (448) T ss_pred ccCHHHHHHHHHHHHHHHH------hccccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC Confidence 3345566677778888864 33321 1 1222233333323344555666677776 477766443333321 Q ss_pred ---c-ccCCC--CC Q lcl|Aclame:pro 337 ---Y-SLDTD--NG 344 (344) Q Consensus 337 ---y-~l~~~--~~ 344 (344) | .|.|+ +- T Consensus 368 ~~~~P~~~f~~~e~ 381 (448) T protein:vir:77 368 ATRFPRLTFEMEER 381 (448) T ss_pred CCCCCEEEecCCCh Confidence 1 22222 22 No 108 >protein:vir:79511 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468055;genbank:gi:157265497;genbank:GeneID:5600628 Probab=99.27 E-value=6.5e-12 Score=81.93 Aligned_cols=311 Identities=12% Similarity=0.001 Sum_probs=162.9 Q ss_pred CCCCCCCCCCCchh--hccccccc--------eEEEEcCC-----ccccccchhHHHHhhhhhcCcceeccccHHHHHHH Q lcl|Aclame:pro 1 MSKKKGKTLQPAAK--KMTASAPK--------MEAFTFGE-----PVPVLDRRDILDYVECISNGRWYEPPISFTGLAKS 65 (344) Q Consensus 1 msk~~~~~~~~~~~--~~~~~~~~--------~~~~~~~~-----p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~ 65 (344) |+||++++.+-.+. ....++.+ .....+++ ..++|+.... +.++ ..+ T Consensus 1 m~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iLr~~~~----------------~~ly--~~m 62 (448) T protein:vir:79 1 MAKRGRKPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELLQGKDG----------------LLVY--HKM 62 (448) T ss_pred CCCCCCCCccccCcccccccccchhhhhhhhhhcccccccccccchhHhhccccc----------------hHHH--HHH Confidence 99999887553322 11111110 11111211 1222322100 0111 111 Q ss_pred hhcchhhhhhhhhhhhhHHHh---cccCC------------------------CCCHHHHHHHHHHHHhcCCeEEEEEEC Q lcl|Aclame:pro 66 LRAAVHHSSPIYVKRNILAST---FIPHP------------------------WLSQQDFSRFVLDFLVFGNAFLEKRYS 118 (344) Q Consensus 66 ~~~~~~~~~~i~~~~~~~~~~---~~pn~------------------------~~~~~~f~~~~~~~ll~Gnay~~i~r~ 118 (344) ..++|..+++..++.-++.. ..|+. ..++..+-.-+.+.+++|.++++++.. T Consensus 63 -~~D~hi~s~l~~Rk~av~~~~w~v~p~~~~~~~~~~ae~v~~~l~~~~~~~~~~~f~~~~~~~lda~~~G~s~~Eivw~ 141 (448) T protein:vir:79 63 -LSDGTVKNALNYIFGRIRSAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIYENAYIYGMAAGEIVLT 141 (448) T ss_pred -hhChHHHHHHHHHHHHHhcCCceEecCCCCHHHHHHHHHHHHHhhhhhhhhccCCHHHHHHHHHHhhhhcceeEEEEee Confidence 12444444443333222210 11211 112223333345677899999999864 Q ss_pred --CCCc--eEEEEEecCcce---eccccCceEEEEcCC--------ceEEEEecccEEEecCCCCCCCccccccchhhHH Q lcl|Aclame:pro 119 --TTGK--VIRLETSPAKYT---RRGVEEDVYWWVPSF--------NEPTAFAPGSVFHLLEPDINQELYGLPEYLSALN 183 (344) Q Consensus 119 --~~G~--~~~L~pl~~~~v---~~~~~~~~~y~~~~~--------~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~ 183 (344) .+|. +..|.+.++..+ ....++...+....+ .....++..-++|.... .....+|.+.+..+.- T Consensus 142 ~~~~g~~~~~~l~~r~~~~~~~f~~~~d~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~-~~g~p~g~gLlr~~~w 220 (448) T protein:vir:79 142 LGADGKLILDKIVPIHPFNIDEVLYDEEGGPKALKLSGEVKGGSQFVSGLEIPIWKTVVFLHN-DDGSFTGQSALRAAVP 220 (448) T ss_pred ecCCCceecccccccCCccccceeeecCCceEEeecCCcccccccCCCccccccceEEEEecC-ccCCcccchhHHHHHH Confidence 3454 456777777643 333444433333221 12234567778887654 3345789999999999 Q ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEeCCC-CCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchh Q lcl|Aclame:pro 184 SAWLNESATLFRRKYYENGAHAGYIMYVTDA-VQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVAT 262 (344) Q Consensus 184 ~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~-~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~ 262 (344) ....-....++...|.+.-+.|--+.+++.+ .-++++++.+.+...+..++.+++. |+ +.|++++-+..... T Consensus 221 ~~~fK~~~~~~w~~f~E~yG~P~~vgky~~ga~~~~~~~~~l~~av~~i~~g~~a~~--ii-----P~~~~ie~~ea~~~ 293 (448) T protein:vir:79 221 HWLAKRALILLINHGLERFMIGVPTLTIPKSVRQGTKQWEAAKEIVKNFVQKPRHGI--IL-----PDDWKFDTVDLKSA 293 (448) T ss_pred HHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCcCHHHHHHHHHHHHHHhcCCceEE--Ee-----cCCceEEEEecCCC Confidence 9999999999999999999999888887633 3346777788877777665555543 33 23444444444334 Q ss_pred HHHHHHHHhhhHHHHHHHhcCCHHHhccccc---cccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccc-- Q lcl|Aclame:pro 263 KDDFFNIKKASAADLLDAHRIPFQLMGGKPE---NVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKN-- 336 (344) Q Consensus 263 d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~---~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~-- 336 (344) -..+.+.-++-.++|+++. +|.+-+ ++++++...+.......+.+.--++.++ -||+.|....+.+|. T Consensus 294 ~~~~~~~i~~~d~~Isk~i------LGqtlTs~~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~li~~l~~lNfg~ 367 (448) T protein:vir:79 294 MPDAIPYLTYHDAGIARAL------GIDFNTVQLNMGVQAINIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLPNWPS 367 (448) T ss_pred cccHHHHHHHHHHHHHHHH------hhhhhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC Confidence 4446677777788888754 443321 1122223222223334455566666676 477766443333321 Q ss_pred ---c-ccCCCCC Q lcl|Aclame:pro 337 ---Y-SLDTDNG 344 (344) Q Consensus 337 ---y-~l~~~~~ 344 (344) | .|.|+.- T Consensus 368 ~~~~P~~~f~~~ 379 (448) T protein:vir:79 368 ATRFPRLTFEME 379 (448) T ss_pred cCCCcEEEecCC Confidence 1 2233222 No 109 >protein:vir:79647 Length: 435 # NCBI annotation: PorT # Family: family:all:297 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285520;genbank:gi:148734503;genbank:GeneID:5220005 Probab=99.22 E-value=1.1e-11 Score=80.65 Aligned_cols=317 Identities=7% Similarity=-0.003 Sum_probs=148.9 Q ss_pred CCCCCCCCCCCchhhcccccc-ceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhh-----h Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAP-KMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHS-----S 74 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~-----~ 74 (344) |||+|++......-....++. +++. .++. .....+...|..++..+-.+..-++... ....|.--... . T Consensus 5 m~~~~~~~~~~D~~~~~~~~~~g~~~---~~~~-~~~~~~~~~l~~~Y~~~~l~~~~Vd~~a-ed~~r~g~~i~g~~~~~ 79 (435) T protein:vir:79 5 MSDKVKAITKEDGYNEIFGSKDGTFR---PNAF-YMQRAAFKALSQFYEEDGMARRIVDVIP-EEMVTPGFKVDGVKNEK 79 (435) T ss_pred cccccccchhhcchhhhhcccccccc---cCcc-cCCcCCHHHHHHHHhcCchhhhhhccch-HHhhcCCceecCCChHH Confidence 999988877655332211110 1000 0100 0111112222222222211122111100 01111100000 1 Q ss_pred hhhhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEE-C---------CCCceEEEEEecCcceecccc----- Q lcl|Aclame:pro 75 PIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRY-S---------TTGKVIRLETSPAKYTRRGVE----- 139 (344) Q Consensus 75 ~i~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r-~---------~~G~~~~L~pl~~~~v~~~~~----- 139 (344) .+..+.. .+-....+...+....++|.+++.+.. + ..|.+..|.++++..+.+... T Consensus 80 ~~~~~~~---------~l~~~~~l~~a~~~~rl~G~~~i~i~~~d~~~~~~Pl~~~g~i~~i~v~d~~~i~~~~~~~dp~ 150 (435) T protein:vir:79 80 SFKSRWD---------ELRLNAKIIDALSWSRLFGGSAILAVVADNKMLKSPVKPGAQLEDIRVYDRYQITIHERETNAR 150 (435) T ss_pred HHHHHHH---------HhhHHHHHHHHHHhhhccccEEEEEEecCCCCcccccccCCceeeEEeechhhccchhhccCCc Confidence 1111111 111223445555556689999888864 3 235666888888887754321 Q ss_pred -----CceEEEEcCCc--eEEEEecccEEEecCC------CCCCCccccccc-hhhHHHHHHHHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 140 -----EDVYWWVPSFN--EPTAFAPGSVFHLLEP------DINQELYGLPEY-LSALNSAWLNESATLFRRKYYENGAHA 205 (344) Q Consensus 140 -----~~~~y~~~~~~--~~~~~~~~eViH~r~~------~~~~~~~G~sp~-~~~~~~i~~~~aa~~~~~~~f~ng~~p 205 (344) ...+|++...+ ....+.++.||||.+. .+....+|.|++ +.+.+.+.....+......++...... T Consensus 151 sp~fg~P~~y~v~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~e~~~~~l~~~~~~~~~~~~l~~~~~~~ 230 (435) T protein:vir:79 151 SVRYGEPKLYKISPGGDIPEFFVHYSRICIIDGERVSNEKRRQNDGWGASILNKRLIEAIVDYNYCQELATQLLRRKQQA 230 (435) T ss_pred ccccCcceEEEEecCCCCCceEEcceeEEEecCCcchhhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc Confidence 11356665433 3567889999999642 223567899998 577888888777777777765444333 Q ss_pred ceEEEeCC--CCC-CHHHHHHHHHHHHHhhc-cccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHh Q lcl|Aclame:pro 206 GYIMYVTD--AVQ-DRNDIEMLRENMVKSKG-RNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAH 281 (344) Q Consensus 206 ~gil~~~~--~~l-~~e~~~~lk~~~~~~~g-~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~f 281 (344) ++++++ ..+ +.+....+.++++.... -++.+.+++.+. .+ +++.++.+..+ +-+......++||++. T Consensus 231 --v~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~i~~~---~e--~~e~~~~~lsg--l~~~~~~~~~~iaaa~ 301 (435) T protein:vir:79 231 --VWKARDLALMCDDEEGRYAARLRLAQVDDESGVGKAIGIDAT---DE--EYEVLNSDVSG--VPEFLQEKIDRIVALT 301 (435) T ss_pred --cccchhHHHhhcCccchHHHHHHHHHHHHhcCCCCceeEecC---Cc--ceEEEecccCC--HHHHHHHHHHHHHhhh Confidence 344432 111 23334444444433222 223344444322 12 35555544443 3455666788999999 Q ss_pred cCCHHHhcccccccccc-ccHHHHHHHHHHH-------HHHHHHHHHHHHHHhhCCcceeccccccCC-CCC Q lcl|Aclame:pro 282 RIPFQLMGGKPENVGSL-GDIEKVAKVFVRN-------ELIPLQDRIREINGWLGQEVIRFKNYSLDT-DNG 344 (344) Q Consensus 282 gVPp~~lg~~~~~~~~~-~n~e~~~~~f~~~-------~l~P~~~~ieeln~~L~~~~~~f~~y~l~~-~~~ 344 (344) +||..+|..... ++. ++-+.....|+.. .+.|.++++-++-- -.+.|.|+...|.. +|- T Consensus 302 ~IP~t~L~G~s~--~glnstgd~d~~~yyd~i~~~Qe~~l~p~l~~l~~li~--~s~d~~~~f~pL~~~sek 369 (435) T protein:vir:79 302 GIHEIIIKNKNT--GGVSASQNTALETFYKLIDRKRVEDYKPILEFLLPFMI--SETEWSIEFEPLSVPSDK 369 (435) T ss_pred CCCeeeeccCCc--cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCCeEEeCCCCCCCHH Confidence 999988733222 222 3345566666653 34555444332211 12233332222222 221 No 110 >protein:vir:107742 Length: 537 # NCBI annotation: gp28 # Family: family:all:297 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024875;genbank:gi:48697517;genbank:GeneID:2948359 Probab=99.10 E-value=2.3e-10 Score=73.38 Aligned_cols=320 Identities=9% Similarity=0.085 Sum_probs=144.2 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhh----cCcceeccccHHHHHHHhhcchhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECIS----NGRWYEPPISFTGLAKSLRAAVHHSSPI 76 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~----~~~~~~~p~~~~~l~~~~~~~~~~~~~i 76 (344) |.-+++...-+....... +.+-.-++.+. .++...|...-. .+-+++.-+.-+.+..+++.+.....++ T Consensus 48 ~~~~~~~~~~~~~~~~~~--~~~a~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~Y~~~~l~r~iV 120 (537) T protein:vir:10 48 MAIRDHAIAMMPKVDGSH--PDMAMDGLDVE-----GGTFSAYANPNLSEGLVLWYAQQAFIGHQMCALIATHWLVNKAC 120 (537) T ss_pred CCCCCccCcccccccccc--cchhccccccc-----hhhhhhhccccccchhhhhccccCCccHHHHHHHHhCchhhhhh Confidence 222221111111111000 00000011110 011111111000 0111111122233444444443333222 Q ss_pred hhhhhhHHHhc---------------------ccCCCCCHHHHHHHHHHHHhcCCeEEEEEE---C-------------C Q lcl|Aclame:pro 77 YVKRNILASTF---------------------IPHPWLSQQDFSRFVLDFLVFGNAFLEKRY---S-------------T 119 (344) Q Consensus 77 ~~~~~~~~~~~---------------------~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r---~-------------~ 119 (344) ........... .-..+..+..|...+...-++|.+++++.- + . T Consensus 121 d~~A~d~~r~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~~~~l~~a~~~~rlyG~~~i~i~v~~~D~~~~~~Pl~~~~i~ 200 (537) T protein:vir:10 121 SQMPRDAMRKGYKIISDDGNELDPKDAKFIDRYDRAFNIKKHAIQFVRKGRIFGIRIALFKVDSPDPYYYEKPFNIDGVM 200 (537) T ss_pred hhhhHHhhcCCceeecCCcccccHHHHHHHHHHHHHhhHHHHHHHHHHhcccccceEEEEeecCcCCccccccccccccc Confidence 22211111000 000111122233333444578999988753 2 1 Q ss_pred CCceEEEEEecCcceeccc------c--Cc-----eEEEEcCCceEEEEecccEEEecCCC------CCCCccccccchh Q lcl|Aclame:pro 120 TGKVIRLETSPAKYTRRGV------E--ED-----VYWWVPSFNEPTAFAPGSVFHLLEPD------INQELYGLPEYLS 180 (344) Q Consensus 120 ~G~~~~L~pl~~~~v~~~~------~--~~-----~~y~~~~~~~~~~~~~~eViH~r~~~------~~~~~~G~sp~~~ 180 (344) .|..+.|..+++.++.+.. + .. .+|.+. + ..+.++.||||.+.. +..+++|+|.++. T Consensus 201 kg~~k~l~vidp~~~~~~~~~~~~~dp~sp~fg~P~~y~v~--g--~~iH~SRli~f~g~~~p~~~~~~~~~~G~Svlq~ 276 (537) T protein:vir:10 201 PGAYKGIVQIDPYWCAPLLDAQASSNPVSMHFYEPTYWLIN--G--KKYHRSHLAIYINDEVVDFLKPSYIYGGVPLPQQ 276 (537) T ss_pred ccceeEEEEechhhcccccchhhhccCCccccCCceeeeec--C--eEecceeEEEecCCCCchhhhcccCcccccHHHH Confidence 2345678888887665421 1 11 244442 2 357889999996542 2235679999999 Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCC--CCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecc Q lcl|Aclame:pro 181 ALNSAWLNESATLFRRKYYENGAHAGYIMYVTD--AVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLS 258 (344) Q Consensus 181 ~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~--~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~ 258 (344) +.+.|.....+.......+...... ++++.+ ...++++..+.-+.|... .+|.+. ++++. ++-+++.++ T Consensus 277 ~~~~l~~~~~t~~~~~~l~~~~~~~--v~k~~~~~~l~~~~~~~~r~~~~~~~--r~n~g~-~~id~----e~e~~e~~~ 347 (537) T protein:vir:10 277 IMERVYAAERTANEGPMLAMTKRQT--VLKVDAAQVLANKQQFDETMSWWTAT--RDNYQV-RVVDK----DNEDVVQID 347 (537) T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc--eeeechHHhhcCHHHHHHHHHHHHhh--cCCcce-eEecC----CCceeEEEe Confidence 9999988877777777777666554 344432 223344433333334333 234444 45543 233455544 Q ss_pred cchhHHHHHHHHhhhHHHHHHHhcCCHHHh-ccccccccccccHHHHHHHHHH------HHHHHHHHHHHHH-HH-hhCC Q lcl|Aclame:pro 259 EVATKDDFFNIKKASAADLLDAHRIPFQLM-GGKPENVGSLGDIEKVAKVFVR------NELIPLQDRIREI-NG-WLGQ 329 (344) Q Consensus 259 ~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~~~~~~n~e~~~~~f~~------~~l~P~~~~ieel-n~-~L~~ 329 (344) .+..+ +-+......+.||++.+||...| |..+. +..++.+.....|+. ..|.|.++++.++ .+ .++. T Consensus 348 ~~lsg--l~~~l~~~~~~iAa~~~IP~t~L~G~sp~--GlnatGe~D~~~yyd~I~~~Qe~l~p~l~~l~~ll~~~~~~~ 423 (537) T protein:vir:10 348 TTLND--LDKVIMNQYQLVCAIARTPAPKMLGTVPT--GFNSTGDYEEASYHEECESTQDDMRPLIDRHHQLVCRSHLRK 423 (537) T ss_pred ccCCC--HHHHHHHHHHHHHhhhCCCceeeccCCcc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC Confidence 44433 33455667788999999999965 54322 122334556666653 3477877776542 22 2232 Q ss_pred c-ceeccccccCC-CCC Q lcl|Aclame:pro 330 E-VIRFKNYSLDT-DNG 344 (344) Q Consensus 330 ~-~~~f~~y~l~~-~~~ 344 (344) + .|.|+...|.. ++- T Consensus 424 ~~~~~i~f~pL~~~s~k 440 (537) T protein:vir:10 424 RIRVKVEFPPMDAPKES 440 (537) T ss_pred CcceEEEeCCCCCCCHH Confidence 1 23333333432 222 No 111 >protein:vir:94049 Length: 532 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453629;genbank:gi:84662665;genbank:GeneID:5142559 Probab=99.06 E-value=1.8e-10 Score=74.06 Aligned_cols=323 Identities=11% Similarity=0.049 Sum_probs=148.9 Q ss_pred CCCCCCCCCCCchhhccccc-cceEEEEcCCccc--c----ccchhH-HHHhhhhhcCcce-eccccHHHHHHHhhcchh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASA-PKMEAFTFGEPVP--V----LDRRDI-LDYVECISNGRWY-EPPISFTGLAKSLRAAVH 71 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~--~----~~~~~v-~~~~~~~~~~~~~-~~p~~~~~l~~~~~~~~~ 71 (344) |-+||+...+...+....-. +++..+..++... + +.+... ..|. .|+ .....-+.+..+++.+.. T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~------~~~~~~~~~~~~l~a~Y~~~~l 96 (532) T protein:vir:94 23 VDAKRATHTSLGLATAHEIDPTAYSPYERNAAQNAMAMDYGLQTGRNGRNAL------SFVEATSWPGFPTLALLAQLPE 96 (532) T ss_pred hhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccCccccccccc------ccccccccchHHHHHHHHcCch Confidence 54444432222211110000 0111111110000 0 000000 0000 000 000111222222222222 Q ss_pred hhhhhhhhhhhHHHh---------------------cccCCCCCHHHHHHHHHHHHhcCCeEEEEEECC----------- Q lcl|Aclame:pro 72 HSSPIYVKRNILAST---------------------FIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYST----------- 119 (344) Q Consensus 72 ~~~~i~~~~~~~~~~---------------------~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~----------- 119 (344) ...++.......... ..-..+--...|...+....++|.+++++...+ T Consensus 97 ~r~~Vd~~aed~~r~~~~i~~~~~~~~~~~~~~~i~~~~~~l~v~~~l~~a~~~~rlyG~a~i~i~v~~~~~~~~~~~p~ 176 (532) T protein:vir:94 97 YRTMHETPADECVRAWGKITCSSKDELAADKATRITQKLEQYNVRTLVRTVVIHDQAYGGAHVFPHLKMDGDSVPADAPL 176 (532) T ss_pred hhhhhccchHHHhhCCceEeeCCccccchHHHHHHHHHHHhhhHHHHHHHHHHhhhcccceEEEEEeccCCccccccccc Confidence 111211111111000 000001111223333444458999998875432 Q ss_pred --------CCceEEEEEecCcceeccccCc-----------eEEEEcCCceEEEEecccEEEecCCCC------CCCccc Q lcl|Aclame:pro 120 --------TGKVIRLETSPAKYTRRGVEED-----------VYWWVPSFNEPTAFAPGSVFHLLEPDI------NQELYG 174 (344) Q Consensus 120 --------~G~~~~L~pl~~~~v~~~~~~~-----------~~y~~~~~~~~~~~~~~eViH~r~~~~------~~~~~G 174 (344) .|.+++|.++++..|.+..... .+|.+..+ ..+.++.||||.+... ..+++| T Consensus 177 ~l~~~~I~~g~~~~l~vld~~~v~p~~~~~~dp~sp~fg~P~~y~v~~g---~~iH~SRli~f~g~~~p~~~~~~~~~~G 253 (532) T protein:vir:94 177 LLSPSFVQRGCLIGFATIEPMWLSPNAYNATDPTLPSFYKPDSWIATSG---KKIHSSRIHTVVGRPVGDMLKAAYSFRG 253 (532) T ss_pred cccccccccceeeEEEeechheecccccccccccccccCCceeEEEccC---eeeccceEEEecCCCchhhhcccccccc Confidence 3455788999998876542211 24444332 2578899999975321 234579 Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeC-CCCCCHHHHHHHHHHHHHhh-ccccccccccccCCCccccc Q lcl|Aclame:pro 175 LPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVT-DAVQDRNDIEMLRENMVKSK-GRNNFKNLFLYAPQGKADGI 252 (344) Q Consensus 175 ~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~-~~~l~~e~~~~lk~~~~~~~-g~~n~~~~~vl~~~~~~~gl 252 (344) +|.++.+...+.....+......+....... ++++. ...++.+..+.+.++++... +.+|. .++++..+ +- T Consensus 254 ~Svlq~~~~~l~~~~~t~~~~~~l~~~~~~~--v~k~~~a~~ls~~~~~~~~~r~~~~~~~~~n~-g~~~id~~----~e 326 (532) T protein:vir:94 254 VSISQLAMPYVDNWLRTRQSVSDTVKQFSMT--NLATDMAQLLAPGGAQSLDARLQLFNLYRDNR-NIGALDKG----TE 326 (532) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--eeeechHHhhcchhHHHHHHHHHHHHhhcCCc-cceEEcCC----Cc Confidence 9999999999988888777777655554333 33432 13456677788888886543 33444 44555421 22 Q ss_pred eeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHh-cccccccccc-ccHHHHHHHHHH-------HHHHHHHHHHHH- Q lcl|Aclame:pro 253 KIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLM-GGKPENVGSL-GDIEKVAKVFVR-------NELIPLQDRIRE- 322 (344) Q Consensus 253 ~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~~~~~-~n~e~~~~~f~~-------~~l~P~~~~iee- 322 (344) +|+.++.+..+ +-+......+.||++.+||..+| |..++ ++ ++-+.....|+. ..|.|.++++-+ T Consensus 327 ~~e~~~~~lsg--l~~~l~~~~~~iAaa~~IP~t~LfG~sp~---GlnstGe~D~~~yyd~I~s~Qe~~l~p~le~l~~~ 401 (532) T protein:vir:94 327 EIQQTNTPLSG--LDSLQAQSQEQMAAVSHIPLVKLLGITPN---GLNASSDGEIRVWYDFIAGYQATNLTPLMEWIIDL 401 (532) T ss_pred eeEEEecccCC--HHHHHHHHHHHHHhHhCCCeeeeecCCcc---cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 45555444333 33445666778999999999965 54322 22 333555566655 447777777654 Q ss_pred HHHh-hCC--cceeccccccC-CCCC Q lcl|Aclame:pro 323 INGW-LGQ--EVIRFKNYSLD-TDNG 344 (344) Q Consensus 323 ln~~-L~~--~~~~f~~y~l~-~~~~ 344 (344) |-+. +|. ..+.|+...|. .++- T Consensus 402 l~~s~~g~~~~d~~~~f~pL~~~s~k 427 (532) T protein:vir:94 402 IQLSEYGQIDPGLAWEWSPLMELDDK 427 (532) T ss_pred HHHHhcCCCCCCceEEeCCCCCCCHH Confidence 3222 232 22444333343 2222 No 112 >protein:vir:107880 Length: 491 # NCBI annotation: gp29 # Family: family:all:313 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024702;genbank:gi:48696939;genbank:GeneID:2845968 Probab=98.97 E-value=1.1e-09 Score=69.72 Aligned_cols=306 Identities=13% Similarity=0.126 Sum_probs=155.8 Q ss_pred CCCC--------------CCCCCCCchhhccccccceEEEEc----CCccccccchhHHHHhhhhhcCcceeccccHHHH Q lcl|Aclame:pro 1 MSKK--------------KGKTLQPAAKKMTASAPKMEAFTF----GEPVPVLDRRDILDYVECISNGRWYEPPISFTGL 62 (344) Q Consensus 1 msk~--------------~~~~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l 62 (344) |+.. ++...+... .........++ .++.++|+.. ++. +.++ T Consensus 1 m~~~i~~~~g~p~~~~~~~~~~~~~ia----~~~~~~~~~~~~~~~~~~~~iLr~~----------~~~-----~~~y-- 59 (491) T protein:vir:10 1 MSKGLWVSPTEFVTFGEPDKSLSSQIA----TRARSIDFFALGMYLPNPDPVLKAL----------GKD-----IRVY-- 59 (491) T ss_pred CCCceeCCCCCccCcccCChHHHHHHH----hhhcccccccccCCccchHHHHHhc----------CCC-----HHHH-- Confidence 4432 221111111 01111111111 1122222110 000 0111 Q ss_pred HHHhhcchhhhhhhhhhhhhHHHh---cccCCC--------------CCHHHHHHHHHHHHhcCCeEEEEEECCCC---c Q lcl|Aclame:pro 63 AKSLRAAVHHSSPIYVKRNILAST---FIPHPW--------------LSQQDFSRFVLDFLVFGNAFLEKRYSTTG---K 122 (344) Q Consensus 63 ~~~~~~~~~~~~~i~~~~~~~~~~---~~pn~~--------------~~~~~f~~~~~~~ll~Gnay~~i~r~~~G---~ 122 (344) ..+ ..++|..+++..++.-++.. ..|+.. .....+-.-+.+.+++|.+..++++...| . T Consensus 60 ~~m-~~D~~i~s~l~~Rk~av~~~~w~i~~~~~~~~~~e~v~e~l~~~~~~~~l~~~lda~~~G~s~~Ei~w~~~~g~~~ 138 (491) T protein:vir:10 60 REL-RADAHVGGCVRRRKAAVKALEWGLDRGKAKSRVAKSIADVFADLDLSRIVTEMLDAVLYGYQPMEITWGKVGNYIV 138 (491) T ss_pred HHH-hhChHHHHHHHHHHHHHhCCCcEEecCCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhhhcceeEEEEEeecCCeeE Confidence 112 23445455554443332211 112111 11222222334667899999999876443 4 Q ss_pred eEEEEEecCcceeccccCceEEEEcCC-ceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 123 VIRLETSPAKYTRRGVEEDVYWWVPSF-NEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYEN 201 (344) Q Consensus 123 ~~~L~pl~~~~v~~~~~~~~~y~~~~~-~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~n 201 (344) +..|.++|+.+.+...++...+...++ .....+++...|+.++.......+|.+.+..+......-....++...|... T Consensus 139 ~~~l~~r~~~~f~~d~~~~l~~~~~~~~~~g~~l~~~k~i~~~~~~~~~~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~ 218 (491) T protein:vir:10 139 PIDVVGKPADWFVYDPENQLRFRSKDHWMQGEELPARKFLVPRQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEK 218 (491) T ss_pred EEEeeeecccceeeccCCceEEecCCCCCCcceecCCCEEEEEecCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH Confidence 668999999988887776666665443 3445666666555554433456789999999999999999999999999999 Q ss_pred cCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHH-HHHHHHhhhHHHHHHH Q lcl|Aclame:pro 202 GAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKD-DFFNIKKASAADLLDA 280 (344) Q Consensus 202 g~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~-q~~e~~~~~~~~Ia~~ 280 (344) -++|--+.+++. ..++++++++.+.+.+..+ ++ .+|+.. ...++++..+.+.... -|.+.-++-.++|+++ T Consensus 219 yG~P~~igky~~-~a~~~ek~~l~~al~~~~~--~a--~~viP~---~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~ 290 (491) T protein:vir:10 219 YGSPMLVGKHPR-SASDGEKNLLLDCLEDMVQ--DA--VAVVPD---DSSIEIKEAAGKTGSADVYERLLHFCRGEVSIA 290 (491) T ss_pred cCCCeEEEecCC-CCCHHHHHHHHHHHHHHhc--Cc--EEEecC---CceeEEEecCCCCCChhHHHHHHHHHHHHHHHH Confidence 999988888754 4678888888888766532 22 233322 2344555444333222 3777777777788775 Q ss_pred hcCCHHHhccccc--cccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhC----------CcceeccccccCCCCC Q lcl|Aclame:pro 281 HRIPFQLMGGKPE--NVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWLG----------QEVIRFKNYSLDTDNG 344 (344) Q Consensus 281 fgVPp~~lg~~~~--~~~~~~n~e~~~~~f~~~~l~P~~~~iee-ln~~L~----------~~~~~f~~y~l~~~~~ 344 (344) .+|.+-+ ++++++-.+... .-....+.-.++.+++ +|+ |. ....+|...+.+-++- T Consensus 291 ------iLGqtlTt~~~gs~a~~~vh~-~v~~di~~~D~~~i~~tln~-li~~l~~~N~~~~~~p~f~~~~~~e~~~ 359 (491) T protein:vir:10 291 ------LLGQNQTTEATSTRASAQAGL-EVTDDIRDGDKAVVSEAMNM-LIRWICDLNFDGADRPVFDMWEQEQVDE 359 (491) T ss_pred ------HhhhhcccCcccchhHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCcceEEecCcCchhH Confidence 3444322 223333222222 2223333444444442 443 21 1222232222221111 No 113 >protein:vir:80040 Length: 461 # NCBI annotation: gp3 # Family: family:all:297 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468707;genbank:gi:157325287;genbank:GeneID:5601731 Probab=98.93 E-value=2.3e-09 Score=67.92 Aligned_cols=323 Identities=11% Similarity=0.060 Sum_probs=153.6 Q ss_pred CCCCCCCCCCCchhhc------ccccc--c-eEE---EEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhc Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKM------TASAP--K-MEA---FTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRA 68 (344) Q Consensus 1 msk~~~~~~~~~~~~~------~~~~~--~-~~~---~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 68 (344) |+++.+.+.......+ ..+.+ . ... -.++.|..+ +.-.|-.++..+-++..-++... ....|. T Consensus 1 ~~~~~~a~~~~~~~~a~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~----~~~~l~~lY~~~~l~r~iVd~~a-~d~~r~ 75 (461) T protein:vir:80 1 MYSIDKAKQAKIDSKIVNRNDFMVGHGKANSRDKLTRQTPGNGQKL----DLKACENLYASNSIAMNIVDIIS-EDMVRA 75 (461) T ss_pred CccchhhhhhhhhhhhhhhhHHHhhcCCcchhhhhhccccCccccc----CHHHHHHHHHhCCccchhhccch-HHhhcC Confidence 9998776544432111 00100 0 111 112222221 12233223332222222222100 111111 Q ss_pred chhhhhhhhhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEE-CCC------------Cc---eEEEEEecCc Q lcl|Aclame:pro 69 AVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRY-STT------------GK---VIRLETSPAK 132 (344) Q Consensus 69 ~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r-~~~------------G~---~~~L~pl~~~ 132 (344) +.+-.+........+.. .-+.+-....+...+....++|.+|+++.- +.+ +. ++.|.|+.+. T Consensus 76 -g~~i~~~~~~~~~~~~~-~~~~l~~~~~l~~~~~~~rl~G~a~i~i~v~d~~~~~~~~~~pl~~~~~~~~~~l~~~~~~ 153 (461) T protein:vir:80 76 -GWSLKTDNKEMKKNIES-KWRKLKTKDRFQKLYADKRLYGDGFLSIGVVSSNREQADLSTAIDPKTIKSIPYINTFNTQ 153 (461) T ss_pred -CeeeecCCHHHHHHHHH-HHHHhhHHHHHHHHHHhhcccccEEEEEEeecCCccccCccCCcccccccceeEEEecccc Confidence 11101111100000000 000111234455666677799999998853 211 22 2233333333 Q ss_pred ceecc---cc-------CceEEEEcC-------------CceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHH Q lcl|Aclame:pro 133 YTRRG---VE-------EDVYWWVPS-------------FNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNE 189 (344) Q Consensus 133 ~v~~~---~~-------~~~~y~~~~-------------~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~ 189 (344) .+... .+ ...+|++.. +.....+.++.|||+.+....+..+|.|.++.+...+.... T Consensus 154 ~i~~~~~~~dp~sp~fg~P~~y~i~~~~~~~~~~~~~~~~~~~~~iH~SRii~~~~~~~~~~~~G~S~le~~~~~l~~~~ 233 (461) T protein:vir:80 154 KVTQLYLNQDMFSEHFGEVEFFEVNRVSQLGEEILSGTTASTSEQIHRSRIIHEQGLRFEGETKGRSIFESLYDIITVMD 233 (461) T ss_pred ccchhhhcccCcCcccccceEEEEeccccccccccccccCccceEEccccEEEecCCCCCccccCcchHHHHHHHHHHHH Confidence 32211 11 112455533 23346789999999987766667889999999999998888 Q ss_pred HHHHHHHHHHHhcCCCceEEEeCC-CCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHH Q lcl|Aclame:pro 190 SATLFRRKYYENGAHAGYIMYVTD-AVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFN 268 (344) Q Consensus 190 aa~~~~~~~f~ng~~p~gil~~~~-~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e 268 (344) .+......+..+...+ ++++++ ..+..+....+.+.++...+ | ..+++++.+ + +++.++.+..+ +-+ T Consensus 234 ~~~~~~~~l~~~~~~~--v~k~~~l~~~~~~~~~~~~~~~~~~~~--~-~g~~~~d~~---e--~~e~~~~~lsg--l~~ 301 (461) T protein:vir:80 234 TSLWSVGQILYDFAFK--VYKTDDIDALNKDDKANLTAMLDFMFR--T-EALAIIKGD---E--QLTKESTNVSG--MKD 301 (461) T ss_pred HHHHHHHHHHHHhCCC--ceecchHHhhhchHHHHHHHHHHHhcC--C-ceEEEEcCC---c--ceEEEecCcCC--HHH Confidence 8888887777765544 556543 12334555566666665543 2 345666542 2 35555544443 345 Q ss_pred HHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHH-------HHHHHHHHHHH-HHHhhCC---------cc Q lcl|Aclame:pro 269 IKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRN-------ELIPLQDRIRE-INGWLGQ---------EV 331 (344) Q Consensus 269 ~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~-------~l~P~~~~iee-ln~~L~~---------~~ 331 (344) ........||++-+||..+|..... +..++.+.....|+.. .+.|+++++-+ |-...+. .. T Consensus 302 ~l~~~~~~iaa~s~iP~t~L~G~s~--g~~asge~D~~~yyd~i~~~qe~~l~p~le~l~~~i~~s~~~~~~~~~p~~~~ 379 (461) T protein:vir:80 302 LLDYGWDYLAGAVRMPKTVLKGQEA--GTLTGAQYDVMNYYARVSSIQENRLRPQLEYLTRLLMWASDDCGPSIDPDSFE 379 (461) T ss_pred HHHHHHHHHhhhhcCCeeeeecccC--CccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccc Confidence 6667888999999999987754332 3345556666666543 35555554432 2111111 11 Q ss_pred eeccccccCC-CCC Q lcl|Aclame:pro 332 IRFKNYSLDT-DNG 344 (344) Q Consensus 332 ~~f~~y~l~~-~~~ 344 (344) +.|....|.. ++- T Consensus 380 ~~i~f~~L~~~s~k 393 (461) T protein:vir:80 380 WAIEFNPLWNLDSK 393 (461) T ss_pred eEEEeCCCCCCCHH Confidence 2222222221 111 No 114 >protein:vir:108215 Length: 469 # NCBI annotation: gp6 # Family: family:all:2372 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552335;genbank:gi:160700655;genbank:GeneID:5758935 Probab=98.90 E-value=1.3e-08 Score=63.86 Aligned_cols=308 Identities=11% Similarity=0.061 Sum_probs=155.9 Q ss_pred CCCCCCCCCCCchhhccccccceEEEE-cCCcc--ccccch---hHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFT-FGEPV--PVLDRR---DILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSS 74 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~--~~~~~~---~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~ 74 (344) |+-+.+++.-+.......+.+.....+ +..++ +.|+.+ .+|.-++ +.++|..+ T Consensus 1 ~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~e~~~~lr~~~~~~ly~~m~---------------------e~D~~i~s 59 (469) T protein:vir:10 1 MTERVKTAAPVSEAGYVFGSGVVDGWTVWDPFEQTPELQWPQSVAVYSRMD---------------------NEDSRVTS 59 (469) T ss_pred CCCcccCCCCccchhhhhhcccccchhhccccccccccccccchHHHHHHH---------------------hhChHHHH Confidence 665555433221111111111111111 11111 122211 1222111 11222222 Q ss_pred hhhhhhhhHHH---hcccCC-----------------------------C--CCH-HHHHHHHHHHHhcCCeEEEEEECC Q lcl|Aclame:pro 75 PIYVKRNILAS---TFIPHP-----------------------------W--LSQ-QDFSRFVLDFLVFGNAFLEKRYST 119 (344) Q Consensus 75 ~i~~~~~~~~~---~~~pn~-----------------------------~--~~~-~~f~~~~~~~ll~Gnay~~i~r~~ 119 (344) ++..++..++. ...|+. . .++ ..+..++.+.+.+|.++.++++.. T Consensus 60 ~l~~rk~av~~~~w~v~p~~~~~e~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~a~~~G~s~~Eivw~~ 139 (469) T protein:vir:10 60 LLEAISLPIRSTPWRIRANGASDEVTEFVSRNLMVPIDGEDDVRNPGRSRGRFSWAEHLEEVTSPTLQFGHAVFEQVYRP 139 (469) T ss_pred HHHHHHHHHhcCCceEecCCCCHHHHHHHHHHHHhhhhhhhhhhhhhhhhccccHHHHHHHHHHHhhhhCceeeeeeeec Confidence 22211111110 001110 0 011 122333445667899999998753 Q ss_pred C-----C--ceEEEEEecCccee---ccccCceEEEEc-------------CCceEEEEecccEEEecCCCCCCCccccc Q lcl|Aclame:pro 120 T-----G--KVIRLETSPAKYTR---RGVEEDVYWWVP-------------SFNEPTAFAPGSVFHLLEPDINQELYGLP 176 (344) Q Consensus 120 ~-----G--~~~~L~pl~~~~v~---~~~~~~~~y~~~-------------~~~~~~~~~~~eViH~r~~~~~~~~~G~s 176 (344) . | .+..|.+.|+.++. ...+++...... .++....+++...|+.++.......+|.+ T Consensus 140 ~~~~~dG~~~~~~l~~rp~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lp~~k~i~~~~~~~~g~p~g~g 219 (469) T protein:vir:10 140 RNQSPDGRFWLRKLAPRPQWTISKFNVAPDGGLESIEQIAPPARTRGSLYVANIAPPEIPVNRLVVYTRNKRPGQWQGKS 219 (469) T ss_pred ccccCCCceeeeeeeecCcccceeeeeccCCceeeeeecCcccccccccccCCCCccccccCcEEEEEecCCCCCcccch Confidence 2 3 36678888876542 222222211110 11223456666655544444445678999 Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeee Q lcl|Aclame:pro 177 EYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIP 256 (344) Q Consensus 177 p~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~p 256 (344) .+..+......-....++...|...-+.|--+.+++. ..++++++.+.+..+...++.+++-+ + +.|++++- T Consensus 220 Llr~~~~~~~fK~~~~~~w~~f~EryG~P~~vgky~~-~a~~~ek~~l~~a~~~~~~g~~a~~i--i-----p~~~~ie~ 291 (469) T protein:vir:10 220 ILRSAYKHWLLKDKLLRIEAATAERNGMGIPVGTASS-ATDEDEVRKMAALARSVRGGINAGVG--L-----AQGQILEL 291 (469) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCcceEEecCC-CCCHHHHHHHHHHHHHHhcCCceEEE--c-----cCCceEEE Confidence 9999999999999999999999999999988888754 46788888898888877655554433 3 34555555 Q ss_pred cccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccc---cccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcce Q lcl|Aclame:pro 257 LSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPE---NVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVI 332 (344) Q Consensus 257 l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~---~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~ 332 (344) +..+.....|.+.-++-.++|+++. +|..-+ ++++++- .+.........+.-.++.++ .||+.|....+ T Consensus 292 ~ea~g~~~~~~~li~~~d~~Isk~i------LG~tlTs~~~gGS~a~-~~vh~ev~~d~~~sDa~~i~~tln~~li~~l~ 364 (469) T protein:vir:10 292 LGVSGNLPDIRRAIEGHDRSIALSG------LAHFLNLDGKGGSYAL-ASVLEDPFTQAVHAYATSICRIANQHIIEDLV 364 (469) T ss_pred eecCCCchHHHHHHHHHHHHHHHHH------hcccccccCccchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 5555555668888888888998865 443311 2233332 23333344445556666665 46665422222 Q ss_pred -----------eccccccCCCCC Q lcl|Aclame:pro 333 -----------RFKNYSLDTDNG 344 (344) Q Consensus 333 -----------~f~~y~l~~~~~ 344 (344) +|...+++.++- T Consensus 365 ~lN~g~~~~~P~~~~~~~e~~~~ 387 (469) T protein:vir:10 365 DINFGVDTPAPVLTFDPIGSRQD 387 (469) T ss_pred HhcCCCCCCccEEEecCCCCcHH Confidence 222223332221 No 115 >protein:vir:104338 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398967;genbank:gi:81343951;genbank:GeneID:3778870 Probab=98.85 E-value=2.3e-09 Score=67.96 Aligned_cols=311 Identities=9% Similarity=0.017 Sum_probs=144.5 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHH---HHHHhhcchh-hhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTG---LAKSLRAAVH-HSSPI 76 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~---l~~~~~~~~~-~~~~i 76 (344) |-|-=.=.. ... + .....-.++.|.+.. .+.+..++...-.+..-++... +.+-.+.... ....+ T Consensus 1 ~~~~D~~~n-----~~~-g-g~~~~~~~~~~~~~~----~~~l~a~Y~~~~l~~~~Vd~~aed~~r~g~~i~~~~~~~~~ 69 (422) T protein:vir:10 1 MVKTDSYAN-----IFL-G-GSDGSEIYGSLQNQA----PTILASLYADNALVRRIIDTIPETALAAGFHIDGIDDEPAF 69 (422) T ss_pred CccchhhHH-----HHc-C-CCCCccccCcccccC----HHHHHHHHHhChhhHHHHhhhhHHHhcCCccccCCCHHHHH Confidence 332111100 000 0 010111233332221 1122222222111111111100 0000001110 01111 Q ss_pred hhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEE-C---------CCCceEEEEEecCcceecccc------- Q lcl|Aclame:pro 77 YVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRY-S---------TTGKVIRLETSPAKYTRRGVE------- 139 (344) Q Consensus 77 ~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r-~---------~~G~~~~L~pl~~~~v~~~~~------- 139 (344) ..+... +--...+...+....++|.+++.+.. + ..|.+..|.++++..+.+... T Consensus 70 ~~~~~~---------l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~~~~Pl~~~g~~~~l~v~d~~~i~~~~~~~dp~s~ 140 (422) T protein:vir:10 70 WSRWDD---------LEMTQNINDAWSWARLFGGAAIVAIVKDNRALTSPVREGAELETVRVYDRTQVKVQTREENPRNA 140 (422) T ss_pred HHHHHH---------hhHHHHHHHHHHhhccccceEEEEEecCCCCccccccccCceeeEEeeccccccchhcccCcccc Confidence 111111 11233445555566689999998864 3 246677899998888765321 Q ss_pred ---CceEEEEcCCc--eEEEEecccEEEecCCC------CCCCccccccchh-hHHHHHHHHHHHHHHHHHHHhcCCCce Q lcl|Aclame:pro 140 ---EDVYWWVPSFN--EPTAFAPGSVFHLLEPD------INQELYGLPEYLS-ALNSAWLNESATLFRRKYYENGAHAGY 207 (344) Q Consensus 140 ---~~~~y~~~~~~--~~~~~~~~eViH~r~~~------~~~~~~G~sp~~~-~~~~i~~~~aa~~~~~~~f~ng~~p~g 207 (344) ...+|.+..++ ..+.+.++-|||+.+.. +....+|.|++.. +.+.+.....+.......+...... T Consensus 141 ~fg~P~~y~v~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~~~~~~-- 218 (422) T protein:vir:10 141 RFGEPLTYRITTNESDMFYDVHYSRIHIIDGERIPNVMRRQNDGWGRSVLSSDILDSIKDYTNCERLATQLLKRKQQA-- 218 (422) T ss_pred ccCcceEEEEecCCCCcceeeccceeEEeCCCCchhhhcccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc-- Confidence 11356665433 34678889999996432 3345689999986 6687877777777777765554433 Q ss_pred EEEeCC--CCC-CHHHHHHHHHHHHHh-hccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcC Q lcl|Aclame:pro 208 IMYVTD--AVQ-DRNDIEMLRENMVKS-KGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRI 283 (344) Q Consensus 208 il~~~~--~~l-~~e~~~~lk~~~~~~-~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgV 283 (344) ++++++ ..+ +.+....+.++++.. ..-++.+.+++.+. +-+++.++.+..+ +-+......++||++.+| T Consensus 219 v~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~-----~e~~e~~~~~lsg--l~~~~~~~~~~iaaa~~I 291 (422) T protein:vir:10 219 VWKAKGLAELCDDSEGFGAARLRLAQVDNNSGVGQAIGIDAE-----SEEYSVLNSDIGG--IDAFLDKKFDRIVALSGI 291 (422) T ss_pred cccchhHHHhcCCccchHHHHHHHHHHHHhcCCccceeEecC-----CcceEEEecccCC--hHHHHHHHHHHHHhhhCC Confidence 444442 111 233444455555432 22234444444322 2346655555543 455666778899999999 Q ss_pred CHHHhcccccccccc-ccHHHHHHHHHHH-------HHHHHHHHHHHHHHhhCCcceeccccccCC-CCC Q lcl|Aclame:pro 284 PFQLMGGKPENVGSL-GDIEKVAKVFVRN-------ELIPLQDRIREINGWLGQEVIRFKNYSLDT-DNG 344 (344) Q Consensus 284 Pp~~lg~~~~~~~~~-~n~e~~~~~f~~~-------~l~P~~~~ieeln~~L~~~~~~f~~y~l~~-~~~ 344 (344) |..+|-.... ++. ++-+...+.|+.. .|.|.++++-++-- -.+.|.|+...|.. +|- T Consensus 292 P~t~L~G~s~--~Glnatgd~d~~~yyd~i~~~Qe~~l~p~l~~l~~~i~--~s~~~~~~f~pL~~~sek 357 (422) T protein:vir:10 292 HEIILKNKNV--GGVSSSQNTALETFHKLVDRKRNAELLPILEFLIPFIV--NAEEWSVEFNPLAQESSK 357 (422) T ss_pred CeeeeccCCc--ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCcEEEeCCCCCCCHH Confidence 9997743222 222 3345555666652 34554444332211 12233332222222 222 No 116 >protein:vir:103860 Length: 528 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938234;genbank:gi:38229139;genbank:GeneID:2648175 Probab=98.85 E-value=2.6e-08 Score=62.17 Aligned_cols=323 Identities=10% Similarity=0.021 Sum_probs=171.3 Q ss_pred CCCCCCCCCCCchh-----hccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHH-HHhhcchhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAK-----KMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLA-KSLRAAVHHSS 74 (344) Q Consensus 1 msk~~~~~~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~-~~~~~~~~~~~ 74 (344) |++=--+.-.+... ..+++-.......-+.|..-|+-..+-.++.-...++. + ....|- .+.+.++|..+ T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~---~-~~~~L~~~m~e~D~~i~s 76 (528) T protein:vir:10 1 MAAIVDIYGNPLRTQQLRKQQTAHLAGLAKEFANHPAKGLTPAKLAHILIEAEQGHL---Q-AQAELFMDMEERDAHLFA 76 (528) T ss_pred CCeeECCCCCccccccccchhhhhhhhhhhhhcccCCCCCCHHHHHHHHHhhhCCCH---H-HHHHHHHHHHhhChHHHH Confidence 66422111111111 11111111111112234333433333344432223322 1 111222 22335677777 Q ss_pred hhhhhhhhHHHh---cccCCCCCH----------------HHHHHHH---HHHHhcCCeEEEEEECC---CCceEEEEEe Q lcl|Aclame:pro 75 PIYVKRNILAST---FIPHPWLSQ----------------QDFSRFV---LDFLVFGNAFLEKRYST---TGKVIRLETS 129 (344) Q Consensus 75 ~i~~~~~~~~~~---~~pn~~~~~----------------~~f~~~~---~~~ll~Gnay~~i~r~~---~G~~~~L~pl 129 (344) ++..++.-++.. ..|...-+. ..|..++ .+.+++|.+..++++.. ...|..+.++ T Consensus 77 ~l~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~f~~~i~~~lda~~~G~s~~Ei~w~~~~g~~~~~~~~~r 156 (528) T protein:vir:10 77 EMSKRKRAVLGLDWTIEPPRNASAAEKADAEYLHELLLDLEGIEDLMLDCMDGVGHGYSAIELDWSLQGREWLPQAFDHR 156 (528) T ss_pred HHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhCCccHHHHHHHHHhhhhhcceeEEEEEeecCCceeEEEeeee Confidence 776665544432 223211111 1244444 45567999999998643 3457789999 Q ss_pred cCcceeccccCceEEEEcCC-ceEEEEeccc-EEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCce Q lcl|Aclame:pro 130 PAKYTRRGVEEDVYWWVPSF-NEPTAFAPGS-VFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGY 207 (344) Q Consensus 130 ~~~~v~~~~~~~~~y~~~~~-~~~~~~~~~e-ViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~g 207 (344) ++.+.+...++...+....+ .....+++.. |+|. +.......+|.+.+..+......-..+.++...|...-++|-- T Consensus 157 ~~~~f~~~~~~~~~l~~~~~~~~g~~l~~~k~iv~~-~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~ 235 (528) T protein:vir:10 157 PQSWFQLNPDDQDELRLRDNSIAGEVLQPFGWIMHK-PRSRSGYVARSGLFRVLAWPYLFKHYSTADLAEMLEIYGLPIR 235 (528) T ss_pred cccceeeccCCCcEEeccCCCCCceeecCCCeEEEe-ecCCCCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCCeE Confidence 99988877766665555433 2334566655 5555 4433456789999999999999999999999999999999988 Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHH Q lcl|Aclame:pro 208 IMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQL 287 (344) Q Consensus 208 il~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~ 287 (344) +.+++. ..++++++++.+.+.+..+ ++ .+|+.. ...++++..+... -.-|.+..++-.++|+++. T Consensus 236 igky~~-~a~~~ek~~L~~al~~i~~--~~--~~iiP~---~~~ie~~ea~~~~-~~~f~~li~~~d~~Isk~i------ 300 (528) T protein:vir:10 236 LGKYPP-GTPDEEKVTLLRAVTGLGH--AA--AGIIPE---SMSIDFQEASKGS-AEPFMAMMRWCDDSMSKAI------ 300 (528) T ss_pred EEecCC-CCCHHHHHHHHHHHHHHhh--Cc--EEEecC---CceeEEeecCCCC-hhHHHHHHHHHHHHHHHHH------ Confidence 888764 4578888888888866532 22 233322 2345666544322 2347778888888888854 Q ss_pred hcccccc------ccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccc-----------cccCCCCC Q lcl|Aclame:pro 288 MGGKPEN------VGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKN-----------YSLDTDNG 344 (344) Q Consensus 288 lg~~~~~------~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~-----------y~l~~~~~ 344 (344) +|.+-+. +++++-.+ ....-....+.--++.++ .||+.|-...+.+|. ..|++.+- T Consensus 301 LGqtlTs~~~~g~~gS~Alg~-vh~~v~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~~~~~~p~~~~~~~e~ 374 (528) T protein:vir:10 301 LGGTLTSQTSESGGGAYALGQ-VHNEVRHDLLAADARQLAATLSRDLLWPLLVLNRSGNLDARRAPRLVFDLKDR 374 (528) T ss_pred hhhhhhccccccccchhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEecCCCc Confidence 4432211 12222112 222334444555566665 466655222222211 12333332 No 117 >protein:vir:79063 Length: 491 # NCBI annotation: gp3 # Family: family:all:313 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111203;genbank:gi:134288841;genbank:GeneID:4960737 Probab=98.80 E-value=1.2e-08 Score=64.07 Aligned_cols=314 Identities=12% Similarity=0.109 Sum_probs=156.9 Q ss_pred CCCC------CCCCC----CCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcch Q lcl|Aclame:pro 1 MSKK------KGKTL----QPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAV 70 (344) Q Consensus 1 msk~------~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 70 (344) |+.. +..+. ++................++. .+++. ...+. -.++. +.++ .++ ..++ T Consensus 1 ~~~~i~~~~g~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~---~~p~~--~~il~-~~~~~-----~~~y--~~m-~~D~ 66 (491) T protein:vir:79 1 MSKGLWVSPTEFVKFGEPDKSLSSQIATRARSIDFFALGM---YLPNP--DPVLK-ALGKD-----IRVY--REL-RADA 66 (491) T ss_pred CCCeeeCCCCCcccccccchhHHHHHhhhccccccccccc---cCcch--hHHHh-hccCC-----HHHH--HHH-hhCh Confidence 4432 11111 111111111111111111111 11111 00000 00110 0111 122 2355 Q ss_pred hhhhhhhhhhhhHHHh---cccCCCCCH-----------HHHHHHH---HHHHhcCCeEEEEEECCC---CceEEEEEec Q lcl|Aclame:pro 71 HHSSPIYVKRNILAST---FIPHPWLSQ-----------QDFSRFV---LDFLVFGNAFLEKRYSTT---GKVIRLETSP 130 (344) Q Consensus 71 ~~~~~i~~~~~~~~~~---~~pn~~~~~-----------~~f~~~~---~~~ll~Gnay~~i~r~~~---G~~~~L~pl~ 130 (344) |..+++..++..++.. ..|+..... ..|..++ .+.+++|.+..++++... -.|..|.+.| T Consensus 67 ~i~s~l~~Rk~av~~~~w~i~~~~~~~~~a~~i~e~l~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~~~~~l~~r~ 146 (491) T protein:vir:79 67 HVGGCVRRRKAAVKALEWGLDRGKAKSRVAKSIADVFADLDLSRIATEMLDAVLYGYQPMEITWGKVGNYIVPIDVVGKP 146 (491) T ss_pred HHHHHHHHHHHHHhCCCcEEecCCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhhhcceeEEEEEeecCCeeeEEeeeeec Confidence 5555555444333321 112111111 0133333 466689999999986543 3467899999 Q ss_pred CcceeccccCceEEEEcCC-ceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEE Q lcl|Aclame:pro 131 AKYTRRGVEEDVYWWVPSF-NEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIM 209 (344) Q Consensus 131 ~~~v~~~~~~~~~y~~~~~-~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil 209 (344) +.++....++...+....+ .....+++...|+.++.......+|.+.+..+......-....++...|.+.-++|--+. T Consensus 147 ~~~f~~d~~~~l~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~~G~P~~ig 226 (491) T protein:vir:79 147 ADWFVYDPENQLRFRSKEHWVQGEELPARKFLVPRQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVG 226 (491) T ss_pred ccceeeccCCceEEeecCCCCCceeecCCCeEEEEecCCCCCcccchhHHHHHHHHHHHHhhHHHHHHHHHHcCCCeEEE Confidence 9988877776666655443 344567776666655544445678999999999999999999999999999999998888 Q ss_pred EeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccc-hhHHHHHHHHhhhHHHHHHHhcCCHHHh Q lcl|Aclame:pro 210 YVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEV-ATKDDFFNIKKASAADLLDAHRIPFQLM 288 (344) Q Consensus 210 ~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~-~~d~q~~e~~~~~~~~Ia~~fgVPp~~l 288 (344) +++. ..++++++++.+.+.+..+ +++ +|+.. ...++++..+.. ..-..|.+..++-..+|+++. + T Consensus 227 ky~~-~a~~~ek~~l~~al~~~~~--~a~--~viP~---~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~i------L 292 (491) T protein:vir:79 227 KHPR-SASDAETNLLLDRLEDMVQ--DAV--AVIPD---DSSIEIKEAAGKSGSADVYERLLHFCRGEVSIAL------L 292 (491) T ss_pred ecCC-CCCHHHHHHHHHHHHHHhc--CeE--EEecC---CceeEEEeccCCCCChhHHHHHHHHHHHHHHHHH------h Confidence 8754 4678888888877766532 222 33322 234455544322 222337777777778888754 4 Q ss_pred cccc--ccccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceecc-----ccccCCCCC Q lcl|Aclame:pro 289 GGKP--ENVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFK-----NYSLDTDNG 344 (344) Q Consensus 289 g~~~--~~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~-----~y~l~~~~~ 344 (344) |.+- +++++++..+.... -....+.-.++.++ .+|+ |....+.++ .+.|.+++- T Consensus 293 GqtlTt~~~gs~a~~~vh~~-v~~~i~~~D~~~i~~tln~-li~~l~~~N~~~~~~p~f~~~e~ 354 (491) T protein:vir:79 293 GQNQTTEATSTRASAQAGLE-VTDDIRDGDKAIVVEAMNM-LIRWICDLNFDGAARPVFDMWEQ 354 (491) T ss_pred hhhhccCcccchhhHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCcceEeecCc Confidence 5432 23334443332222 22333344444444 2443 311111111 122233222 No 118 >protein:vir:389 Length: 530 # NCBI annotation: gp4 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046899;genbank:gi:9630468;genbank:GeneID:1261643 Probab=98.78 E-value=1.2e-08 Score=64.04 Aligned_cols=323 Identities=7% Similarity=-0.045 Sum_probs=146.6 Q ss_pred CCCCCCCCCCC-----chhhccccccc-eE-EEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhh Q lcl|Aclame:pro 1 MSKKKGKTLQP-----AAKKMTASAPK-ME-AFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHS 73 (344) Q Consensus 1 msk~~~~~~~~-----~~~~~~~~~~~-~~-~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~ 73 (344) |..+.--.+.+ ........++. .. .-.| .|...-...++......+ ..+-..+.+.+++.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~w-~~~~~s~~~~i~~~~~~l-----------r~RaRdl~rNn~~a~ 68 (530) T protein:vir:38 1 MKIPSLVGPDGKTSLREYAGYHGGGGGFGGQLRGW-NPPSESADAALLPNYSRG-----------NARADDLVRNNGYAA 68 (530) T ss_pred CccceeecCccccchHHHhhhhcccCCCCCccccc-ccCCCCHHHHHHHHHHHH-----------HHHHHHHHhcChHHH Confidence 44333222111 11111111111 00 1111 111000111111111000 000011111111111 Q ss_pred hhhhhhhhhHHH-----------------------------------hcccC------CCCCHHHHHHHHH-HHHhcCCe Q lcl|Aclame:pro 74 SPIYVKRNILAS-----------------------------------TFIPH------PWLSQQDFSRFVL-DFLVFGNA 111 (344) Q Consensus 74 ~~i~~~~~~~~~-----------------------------------~~~pn------~~~~~~~f~~~~~-~~ll~Gna 111 (344) +++....++.+. ...++ ..++++.+..++. .++..|++ T Consensus 69 ~av~~~~~nvVG~Gi~~~~~p~~~~l~~~~~~~~~~~~~ie~~w~~W~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~ 148 (530) T protein:vir:38 69 NAVQLHQDHIVGSFFRLSYRPSWRYLGINEEDSRAFSRDVEAAWNEYAEDDFCGIDAERKRTFTMMIREGVAMHAFNGEL 148 (530) T ss_pred HHHHHHHHHhhCCCceeeeccchhhcCCCHhHHHHHHHHHHHHHHHhhcCCCcEEeeeccCCHHHHHHHHHHHHhhCCce Confidence 111111111110 11222 3456667776654 77889999 Q ss_pred EEEEEECCC-C--ceEEEEEecCcceecc---ccCc---------------eEEEEcC--Cce----------EEEEecc Q lcl|Aclame:pro 112 FLEKRYSTT-G--KVIRLETSPAKYTRRG---VEED---------------VYWWVPS--FNE----------PTAFAPG 158 (344) Q Consensus 112 y~~i~r~~~-G--~~~~L~pl~~~~v~~~---~~~~---------------~~y~~~~--~~~----------~~~~~~~ 158 (344) |+.+.+... | .+..|..|+|..+... .++. .||.... .+. ...+++. T Consensus 149 ~~~~~~~~~~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v~a~ 228 (530) T protein:vir:38 149 CVQATWDSDSTRLFRTQFKMVSPKRVSNPNNIGDTRNCRAGVKINDSGAALGYYVSDDGYPGWMAQNWTYIPRELPGGRP 228 (530) T ss_pred EEEeeeccCCCCccceEEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEEeeccCCCccccccceeeeeeccChh Confidence 999986543 3 2567888888766421 1111 1333221 111 1235567 Q ss_pred cEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCC----------CHHHHHHHHHHH Q lcl|Aclame:pro 159 SVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQ----------DRNDIEMLRENM 228 (344) Q Consensus 159 eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l----------~~e~~~~lk~~~ 228 (344) +|||+....--....|+|.+..+...+.-...-++....--+=.+.-.++|+.+.+.. .+++...+.... T Consensus 229 ~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (530) T protein:vir:38 229 SFIHVFEPMEDGQTRGANAFYSVMEQMKMLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFILGADNKEQQSKLTGWL 308 (530) T ss_pred HeEeeccccCCCcccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeeccCCccccccccccCCcccccccccccc Confidence 9999987765567899999998887776655555555444455566666776432110 111111122221 Q ss_pred HHhhcc-------ccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHh-cccccccccccc Q lcl|Aclame:pro 229 VKSKGR-------NNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLM-GGKPENVGSLGD 300 (344) Q Consensus 229 ~~~~g~-------~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~~~~~~n 300 (344) ....+. -..|.+..|. .|-+++.++.+---.+|.+..+.....||+.+|||-+.| |.. ++.+||+ T Consensus 309 ~~~~~~~~~~~~~l~pG~i~~L~-----pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D~--s~~nYSS 381 (530) T protein:vir:38 309 GEMAAYYSAAPVRLGGARVPHLL-----PGDSLNLQSAQDTDNGYSTFEQSLLRYIAAGLGVSYEQLSRNY--SQMSYST 381 (530) T ss_pred hhhhhcccccceeccCceeeecC-----CCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhccc--ccccHHH Confidence 111110 1234555554 355666666554567788999999999999999999887 433 3467887 Q ss_pred HHHHHHHHHHH-----------HHHHHHHHHHHHHHhhCCcceec-cccccCCCCC Q lcl|Aclame:pro 301 IEKVAKVFVRN-----------ELIPLQDRIREINGWLGQEVIRF-KNYSLDTDNG 344 (344) Q Consensus 301 ~e~~~~~f~~~-----------~l~P~~~~ieeln~~L~~~~~~f-~~y~l~~~~~ 344 (344) +.+....|.+. -+.|+.+.|- ...+....+.. ....+++... T Consensus 382 ~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl--~~av~~G~i~~p~~~~~~~~~~ 435 (530) T protein:vir:38 382 ARASANESWAYFMGRRKFVASRQACQMFLCWL--EEAIVRRVVTLPSKARFSFQEA 435 (530) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHcCCccCCCCCCCCchhh Confidence 66665555443 2334333321 11111111211 1122333222 No 119 >protein:vir:99563 Length: 862 # NCBI annotation: minor head protein-like protein # Family: family:all:297 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039808;genbank:gi:126011058;genbank:GeneID:4818258 Probab=98.76 E-value=2e-08 Score=62.74 Aligned_cols=326 Identities=10% Similarity=0.047 Sum_probs=146.7 Q ss_pred CCCCCCCCCCCchh-----hccccccceEEE----------------EcCCc----------------cccccch-hHHH Q lcl|Aclame:pro 1 MSKKKGKTLQPAAK-----KMTASAPKMEAF----------------TFGEP----------------VPVLDRR-DILD 42 (344) Q Consensus 1 msk~~~~~~~~~~~-----~~~~~~~~~~~~----------------~~~~p----------------~~~~~~~-~v~~ 42 (344) |.++++-++--... ..+...+.+... ++-.| ...|..+ +--. T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~Dgl~n~~~~lG~~~~~s~ 118 (862) T protein:vir:99 39 LARTRQNWPVQKEKPNPIIRSVKDFPFVEISDSVNAKSVSGKNFAMDSAVRSAIKAITGFAMDDGGGAPVPIGAEGKQSS 118 (862) T ss_pred HHhhcccCCcccccCCCCCCcccccccccccccccchhhhhhhhcchhhcchhhhhhhhhhhhcchhhhhhccccccccc Confidence 66555433111100 001111110000 00000 0000000 0000 Q ss_pred HhhhhhcCcceecc-ccHHHHHHHhhcchhhhhhhhhhhhhHHHhcc----cC--CCCC----------------HHHHH Q lcl|Aclame:pro 43 YVECISNGRWYEPP-ISFTGLAKSLRAAVHHSSPIYVKRNILASTFI----PH--PWLS----------------QQDFS 99 (344) Q Consensus 43 ~~~~~~~~~~~~~p-~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~----pn--~~~~----------------~~~f~ 99 (344) +........|+.++ ..-+.+..+++.+..-..++............ .+ .... ...|. T Consensus 119 y~~~~~~~~~~~~~~f~gyql~alY~~~~larkiVd~pAeDatR~g~~I~~~~d~~e~~~e~~~~ie~~~~rL~v~~~l~ 198 (862) T protein:vir:99 119 YAVPEALQDWYLSQGFIGHQACALIAQHWLVDKACSLAGEDAIRNGWHLKSLGEGEEIDEESLEKFKAIDVEFKVKENLI 198 (862) T ss_pred cccchhccccccccCcccHHHHHHHHhCchhhhhhhhhhHHHhhCCceEeecCcccccCHHHHHHHHHHHHHhhHHHHHH Confidence 00000001111111 11123444444444433333322221111100 00 0000 11111 Q ss_pred HHHHHHHhcCCeEEEEEE---CC-------------CCceEEEEEecCcceeccc------cC--c-----eEEEEcCCc Q lcl|Aclame:pro 100 RFVLDFLVFGNAFLEKRY---ST-------------TGKVIRLETSPAKYTRRGV------EE--D-----VYWWVPSFN 150 (344) Q Consensus 100 ~~~~~~ll~Gnay~~i~r---~~-------------~G~~~~L~pl~~~~v~~~~------~~--~-----~~y~~~~~~ 150 (344) ..+...-++|.+++++.. |. .|.+++|..+++.++.... +. . .+|.+. + T Consensus 199 eair~~RLyGga~ililv~~~D~~~LsqPLn~e~I~kG~lkgl~vlDp~w~~p~~v~~~~~Dp~sp~yGkP~~y~I~--g 276 (862) T protein:vir:99 199 EFNRFKNVFGIRVAIFVVDSEDPDYYEKPFNPDGITPGSYRGISQIDPYWMMPMLTAESTADPSSQFFYEPEFWIIS--G 276 (862) T ss_pred HHHHhcccccceEEEEEecCcCchhhhcCcCcccccccceeEEEEechhhhcccccccccccccccccCCceeeeec--C Confidence 222223368888877653 21 2455678888877665321 11 1 134432 2 Q ss_pred eEEEEecccEEEecCCC------CCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCC-CCCHHHHHH Q lcl|Aclame:pro 151 EPTAFAPGSVFHLLEPD------INQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDA-VQDRNDIEM 223 (344) Q Consensus 151 ~~~~~~~~eViH~r~~~------~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~-~l~~e~~~~ 223 (344) ..+.++-|||+.+.. +...++|+|.++.+.+.|.....+......++.+.... ++++.+. .+.. .+. T Consensus 277 --~~IH~SRliif~g~~vpd~lk~ay~f~G~SvLe~iyd~L~~~d~t~~saa~Ll~ka~l~--v~ktd~l~~l~~--ed~ 350 (862) T protein:vir:99 277 --QKYHRSHLIIARGPQPADILKPTYIFGGIPLVQRIYERVYAAERTANEAPLLAMNKRTT--AIHTDTAKAIAN--EDK 350 (862) T ss_pred --eeeccceeEEecCCCchhhhhccCCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccc--eeechhHhhhcc--HHH Confidence 246778888886532 22345799999999999999988888888888776543 4454331 1222 234 Q ss_pred HHHHHHHh-hccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHH-hccccccccccccH Q lcl|Aclame:pro 224 LRENMVKS-KGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQL-MGGKPENVGSLGDI 301 (344) Q Consensus 224 lk~~~~~~-~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~-lg~~~~~~~~~~n~ 301 (344) +.+.++.. .+-+| ..+++++. ++ +|+.++.+..+ +-+......+.||++.+||... +|..+. +..++. T Consensus 351 l~~r~~~~~~~rdN-~Gi~liD~---eE--e~e~ls~slSG--L~dll~~~~q~IAaas~IP~tiLfGqspa--GlnATG 420 (862) T protein:vir:99 351 FIQRLMFWVRYRDN-HAVKVLGT---DE--TMEQFDTSLAD--FDAVIMGQYQLVASIAKTPATKLLGTAPK--GFNSTG 420 (862) T ss_pred HHHHHHHHHhccCc-ceeEEecC---CC--ceeEEecccCC--hHHHHHHHHHHHHhhhCCCceeecccCcc--cccCch Confidence 44444432 22334 34666654 23 35544443332 2234445566899999999995 454322 223445 Q ss_pred HHHHHHHHH-------HHHHHHHHHHHH-HHHhhCC-cceeccccccCCCCC Q lcl|Aclame:pro 302 EKVAKVFVR-------NELIPLQDRIRE-INGWLGQ-EVIRFKNYSLDTDNG 344 (344) Q Consensus 302 e~~~~~f~~-------~~l~P~~~~iee-ln~~L~~-~~~~f~~y~l~~~~~ 344 (344) +.....||. ..|.|+++++.. +...++. ..+.|....|..-+. T Consensus 421 E~D~~nYyD~I~s~QE~~L~P~LerL~~li~~~lg~~~d~~ieFnpL~~~se 472 (862) T protein:vir:99 421 EFETISYHEELESIQEHVYMPFLQRHYLISRLSLGIQHEIDVVMEPVASMTA 472 (862) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceEEeCCCCCCCH Confidence 666666765 457788888764 4445553 234444444443333 No 120 >protein:vir:79538 Length: 502 # NCBI annotation: putative portal protein # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272517;genbank:gi:148609386;genbank:GeneID:5204374 Probab=98.74 E-value=4e-09 Score=66.64 Aligned_cols=318 Identities=9% Similarity=-0.039 Sum_probs=145.4 Q ss_pred CC----CCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhh Q lcl|Aclame:pro 1 MS----KKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPI 76 (344) Q Consensus 1 ms----k~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i 76 (344) .| -|+.+..+ ....=..++......+. |.......++..+...+ ..+-..+.+.+++-.+++ T Consensus 11 ~sP~~~~~R~~ar~--~~~~y~aa~~~r~~~~~-~~~~s~~~~~~~~~~~l-----------r~RaRdl~rNn~~a~~av 76 (502) T protein:vir:79 11 FSPGWKAARLRSRA--VIQAYEAVKTTRTHKAR-RENRTADQLSQYGAVSL-----------REQARYLDNNHDLVIGVF 76 (502) T ss_pred cChHHHHHHHhhHH--HHhhccccCcccccCCC-CCCCChHHHHHHHHHHH-----------HHHHHHHHhcChHHHHHH Confidence 22 11111000 00000111111111111 11111111111111000 001111222222222222 Q ss_pred hhhhhhHHHh----------------------------------cccCCCCCHHHHHHHHH-HHHhcCCeEEEEEECC-- Q lcl|Aclame:pro 77 YVKRNILAST----------------------------------FIPHPWLSQQDFSRFVL-DFLVFGNAFLEKRYST-- 119 (344) Q Consensus 77 ~~~~~~~~~~----------------------------------~~pn~~~~~~~f~~~~~-~~ll~Gnay~~i~r~~-- 119 (344) ....++.+.+ .--...++++.+..++. .++..|++|+.+.+.. T Consensus 77 ~~~~~nvVG~ggi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~~~~~~~~ 156 (502) T protein:vir:79 77 DKLEERVVGKNGIIVEPHPVLRNGAIARDLAAEIRTRWSEWSVSPEVTGQFTRPMLERLMLRTWLRDGEVFAQMVSGRIN 156 (502) T ss_pred HHHHHhhccCCceeeeeccCCCChhHHHHHHHHHHHHHHHhhcCcCccccCCHHHHHHHHHHHHHhCCceEEEEeecccC Confidence 2222222111 11122455666666554 7788999999986543 Q ss_pred -----CCceEEEEEecCcceecccc--------------Cc-eEEEEc----C---CceEEEEecccEEEecCCCCCCCc Q lcl|Aclame:pro 120 -----TGKVIRLETSPAKYTRRGVE--------------ED-VYWWVP----S---FNEPTAFAPGSVFHLLEPDINQEL 172 (344) Q Consensus 120 -----~G~~~~L~pl~~~~v~~~~~--------------~~-~~y~~~----~---~~~~~~~~~~eViH~r~~~~~~~~ 172 (344) .+.+..|..|+|.++....+ +. ..|++. . ..+...+++++|||+..+.--... T Consensus 157 ~~~~g~~~~l~lq~iepd~l~~~~~~~~~i~~GVe~d~~Gr~~aY~i~~~hPgd~~~~~~~rvpA~~vlH~f~~~r~gQ~ 236 (502) T protein:vir:79 157 SLTPSAGVHFWLEALEPDFIPMTSDESNRLNQGVFVDDWGRPEKYLVYKSRPVSGRQMETKEVDAERMLHLKFVRRLHQM 236 (502) T ss_pred ccCCCcccceEEEEecchhcCCCCCCCCeeEeeeEECCCCceEEEEEeecCCCCCcccceeEechhheEEeecccCCccc Confidence 33467888998877642211 11 123332 1 233467899999999876545678 Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHH-HHhhccccccccc-cccCCCccc Q lcl|Aclame:pro 173 YGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENM-VKSKGRNNFKNLF-LYAPQGKAD 250 (344) Q Consensus 173 ~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~-~~~~g~~n~~~~~-vl~~~~~~~ 250 (344) .|+|.+..+...+.....-++....--+=.+...++|+.+++.... .+..-..- +..... ..|.++ .|. . T Consensus 237 RGis~lapvl~~l~~l~~~~dael~~a~i~A~~~~fi~~~~~~~~~--~~~~~~~~~~~~~~l-~pG~i~~~L~-----p 308 (502) T protein:vir:79 237 RGTSLLSGVLIRLSALKEYEDSELTAARIAAALGMYIRKGDGQSYE--PDGNGSKENERELTI-QPGIIYDDLK-----P 308 (502) T ss_pred cCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCcccc--cccCCCCCccccccc-cCCccccccC-----C Confidence 8999999988877666555555555555566677787754321100 00000000 000001 123332 343 3 Q ss_pred cceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHH-----------HHHHHHHH Q lcl|Aclame:pro 251 GIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRN-----------ELIPLQDR 319 (344) Q Consensus 251 gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~-----------~l~P~~~~ 319 (344) |.+++....+..-..|.+..+.....||+.+|||-+.|-.- -+++||++......|.+. -++|+.+. T Consensus 309 Ge~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D--~s~nySs~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~ 386 (502) T protein:vir:79 309 GEEIGMVKSDRPNPNLETFRNGQLRAVAAGSRLSFSSTARN--YNGTYSAQRQELVESTDGYLILQDWFIGAVTRPMYRA 386 (502) T ss_pred CceeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 55666666554556788899999999999999998887542 234788777766666443 33333332 Q ss_pred HHHHHHhhCCcceecccc--------------ccCC-CCC Q lcl|Aclame:pro 320 IREINGWLGQEVIRFKNY--------------SLDT-DNG 344 (344) Q Consensus 320 ieeln~~L~~~~~~f~~y--------------~l~~-~~~ 344 (344) |- ...+....+....| .... |.. T Consensus 387 ~l--~~a~l~G~i~~p~~~~~~~~~~~~W~~p~~~~iDP~ 424 (502) T protein:vir:79 387 WL--KQAVASGVIRLPRDLDRSSLYTAVYSGPVMPWIDPV 424 (502) T ss_pred HH--HHHHHcCCCCCCCCCCchhhcceeeecCCccccChH Confidence 21 11111111111111 0000 000 No 121 >protein:vir:99232 Length: 526 # NCBI annotation: putative portal protein # Family: family:all:313 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950451;genbank:gi:119953652;genbank:GeneID:4643092 Probab=98.72 E-value=8.1e-08 Score=59.46 Aligned_cols=323 Identities=10% Similarity=0.028 Sum_probs=169.1 Q ss_pred CCCCCCCCCCCchhhc-----cccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHH-HHhhcchhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKM-----TASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLA-KSLRAAVHHSS 74 (344) Q Consensus 1 msk~~~~~~~~~~~~~-----~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~-~~~~~~~~~~~ 74 (344) |++=--+.-.|..... +++-.......-+.|..-|+-..+-..+.-...++. . ....|. ++.+.++|..+ T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iLr~a~~gd~-~---~~~~L~e~m~e~D~~i~s 76 (526) T protein:vir:99 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNL-Q---AQAELFMDMEERDAHLFA 76 (526) T ss_pred CCeeECCCCCccccccccchhhhhhhhhhhhhcccCcCCCCHHHHHHHHHhhhCCCH-H---HHHHHHHHHHhhChHHHH Confidence 6653322222221110 011000000111123222322222222222222221 1 111122 23335667777 Q ss_pred hhhhhhhhHHHh---cccCCCCCH----------------HHHHHHH---HHHHhcCCeEEEEEECCC---CceEEEEEe Q lcl|Aclame:pro 75 PIYVKRNILAST---FIPHPWLSQ----------------QDFSRFV---LDFLVFGNAFLEKRYSTT---GKVIRLETS 129 (344) Q Consensus 75 ~i~~~~~~~~~~---~~pn~~~~~----------------~~f~~~~---~~~ll~Gnay~~i~r~~~---G~~~~L~pl 129 (344) ++..++.-++.. ..|+...+. ..|..++ .+.+.+|.+..+++.... -.|..|.+. T Consensus 77 ~l~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Eivw~~~~g~~~~~~l~~r 156 (526) T protein:vir:99 77 EMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPLAFHHR 156 (526) T ss_pred HHHHHHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcccCHHHHHHHHHHhhhhcceeEEEEEeecCCceeEEEeeee Confidence 776665554432 233221111 1133333 456679999999986543 357789999 Q ss_pred cCcceeccccCceEEEEcC-CceEEEEecc-cEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCce Q lcl|Aclame:pro 130 PAKYTRRGVEEDVYWWVPS-FNEPTAFAPG-SVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGY 207 (344) Q Consensus 130 ~~~~v~~~~~~~~~y~~~~-~~~~~~~~~~-eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~g 207 (344) ++.+.+...+......+.. ......+++. -|+|.. .......+|.+.+..+......-..+.++...|...-++|-- T Consensus 157 ~~~~f~~~~~~~~~l~~~~~~~~g~~l~~~k~i~~~~-~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~ 235 (526) T protein:vir:99 157 PQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRP-RARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIR 235 (526) T ss_pred cccceeeccCCCcEEEecCCCCCceeecCCCeEEEee-cCCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCceE Confidence 9998887776665554433 3344456655 456654 333466789999999999999999999999999999999988 Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHH Q lcl|Aclame:pro 208 IMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQL 287 (344) Q Consensus 208 il~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~ 287 (344) +.+++. ..++++++++.+.+.+..+ ++ .+|+.. ...+++...+.. .-.-|.+.-++-.++|+++. T Consensus 236 igky~~-~a~~~ek~~L~~av~~i~~--d~--~~iiP~---~~~ie~~ea~~~-~~~~f~~li~~~d~~Isk~i------ 300 (526) T protein:vir:99 236 LGKYPP-GTADEEKATLLRAVTGLGH--AA--AGIIPE---TMAIDFQQAAQG-SSEPFLAMMRQSEDAISKAV------ 300 (526) T ss_pred EEecCC-CCCHHHHHHHHHHHHHHhh--Cc--EEEecC---CceeEEeecCCC-CHHHHHHHHHHHHHHHHHHH------ Confidence 888764 3578888888888866532 22 233322 234556554432 22347788888888898864 Q ss_pred hccccc------cccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceecccc-----------ccCCCCC Q lcl|Aclame:pro 288 MGGKPE------NVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNY-----------SLDTDNG 344 (344) Q Consensus 288 lg~~~~------~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y-----------~l~~~~~ 344 (344) +|.+-+ +.++++..+.. ..-....+.--++.++ .||+.|-...+.+|.. .+++.+- T Consensus 301 LGqtlTs~~~~g~~gS~a~g~vh-~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~~~~e~ 374 (526) T protein:vir:99 301 LGGTLTSTTSQSGGGAFALGQVH-NEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQ 374 (526) T ss_pred hhhhhccccccCcchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEeCCCCc Confidence 443311 12233322222 2223334445555565 4666553322222211 2222222 No 122 >protein:vir:107662 Length: 427 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003893;genbank:gi:45686310;genbank:GeneID:2773002 Probab=98.72 E-value=1.4e-08 Score=63.57 Aligned_cols=310 Identities=10% Similarity=0.038 Sum_probs=138.1 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCcccccc-chhHHHHhhhhhcC----cceeccccHHHHHHHhhcchh-hhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLD-RRDILDYVECISNG----RWYEPPISFTGLAKSLRAAVH-HSS 74 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~v~~~~~~~~~~----~~~~~p~~~~~l~~~~~~~~~-~~~ 74 (344) |..-+.-.-+.. ...+..++ .+ |..... +..+.+ ++..+ .++..|..-. +.+-.+.... ... T Consensus 1 ~~~~~~d~~~~~---~~~~~~~~-~~----~~~~~~~~~~l~a---~Y~~~~l~~~~Vd~~aed~-~r~g~~i~g~~~~~ 68 (427) T protein:vir:10 1 MKIVKHDGYNDI---FNGGADGS-PK----PFFMSDASYHVGS---FYNDNATAKRIVDVIPEEM-VTAGFKMSGVKDEK 68 (427) T ss_pred CCccccchHHHH---hhcCCCCc-cc----CccccCchHHHHH---HHHcCchhhhhhccchHHh-hcCCccccCccHHH Confidence 221111111100 00000000 00 000000 001111 11111 1111111100 0000000100 000 Q ss_pred hhhhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEE----------CCCCceEEEEEecCcceecccc----- Q lcl|Aclame:pro 75 PIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRY----------STTGKVIRLETSPAKYTRRGVE----- 139 (344) Q Consensus 75 ~i~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r----------~~~G~~~~L~pl~~~~v~~~~~----- 139 (344) .+..+.. .+--...+...+...-++|.+++.+.- ++.|.+..|.+++++.+.+... T Consensus 69 ~~~~~~~---------~l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~l~~p~~~~g~l~~l~v~d~~~~~~~~~~~dp~ 139 (427) T protein:vir:10 69 EFKSLWD---------SYKLDSSLVDLLCWARLYGGAAMVAIIKDNRMLTSQAKPGAKLEGVRVYDRFAITVEKRVTNAR 139 (427) T ss_pred HHHHHHH---------HhhHHHHHHHHHHhccccceeEEEEEecCCCccccccCCCcceeEEEEechhcccccccccCcc Confidence 1111100 011123344455555689999998742 3467889999999887765321 Q ss_pred -----CceEEEEcCCc--eEEEEecccEEEecCCC------CCCCccccccch-hhHHHHHHHHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 140 -----EDVYWWVPSFN--EPTAFAPGSVFHLLEPD------INQELYGLPEYL-SALNSAWLNESATLFRRKYYENGAHA 205 (344) Q Consensus 140 -----~~~~y~~~~~~--~~~~~~~~eViH~r~~~------~~~~~~G~sp~~-~~~~~i~~~~aa~~~~~~~f~ng~~p 205 (344) ...+|.+.+++ ..+.+.++-|||+.+.. +....+|.|++. .+.+.+.....+.......+...... T Consensus 140 s~~fg~P~~y~v~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~k~~~~ 219 (427) T protein:vir:10 140 SPRYGEPEIYKVSPGDNMQPYLIHHSRVFIADGERVAQQARKQNQGWGASVLNKSLIDAICDYDYCESLATQILRRKQQA 219 (427) T ss_pred ccccCcceEEEEecCCCCcceEEccccEEEecCCCchhhhcccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccc Confidence 11356665433 34678899999996542 245678999986 56677777766666666655554332 Q ss_pred ceEEEeCC--CCC-CHHHHHHHHHHHHHh-hccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHh Q lcl|Aclame:pro 206 GYIMYVTD--AVQ-DRNDIEMLRENMVKS-KGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAH 281 (344) Q Consensus 206 ~gil~~~~--~~l-~~e~~~~lk~~~~~~-~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~f 281 (344) ++++++ ..+ +.+....++++++.. ..-++.+.+++... +-+++.++.+..+ +-+......++||++. T Consensus 220 --v~k~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~-----~e~~e~~~~~lsg--l~~~~~~~~~~iaaa~ 290 (427) T protein:vir:10 220 --VWKVKGLAEMCDDDDAQYAARLRLAQVDDNSGVGRAIGIDAE-----TEEYDVLNSDISG--VPEFLSSKMDRIVSLS 290 (427) T ss_pred --cccchhHHHHhcCccchHHHHHHHHHHHHhcCcccceeeecC-----CCceeEEecccCC--hHHHHHHHHHHHHhhh Confidence 445443 111 122333444444332 22234444544422 2235555444433 3445666778999999 Q ss_pred cCCHHHhcccccccccc-ccHHHHHHHHHH-------HHHHHHHHHHHHHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 282 RIPFQLMGGKPENVGSL-GDIEKVAKVFVR-------NELIPLQDRIREINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 282 gVPp~~lg~~~~~~~~~-~n~e~~~~~f~~-------~~l~P~~~~ieeln~~L~~~~~~f~~y~l~~~~~ 344 (344) +||...|-.... ++. ++-+.....||. ..|.|.++++-++-- -.+.|.|+...|..-+. T Consensus 291 ~IP~t~L~G~sp--~Glnstgd~D~~nyyd~i~~~Qe~~l~p~l~~l~~~i~--~s~~~~~~f~pL~~~s~ 357 (427) T protein:vir:10 291 GIHEIIIKNKNV--GGVSASQNTALETFYKLVDRKREEDYRPLLEFLLPFIV--DEEEWSIEFEPLSVPSK 357 (427) T ss_pred CCCeeeeccCCc--cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCcEEEeCCCCCCCH Confidence 999997733222 222 334556666665 345555544433211 12333333222222222 No 123 >protein:vir:96738 Length: 505 # NCBI annotation: putative phage-related protein # Family: family:all:47 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039817;genbank:gi:126010916;genbank:GeneID:5076248 Probab=98.72 E-value=2.6e-09 Score=67.66 Aligned_cols=320 Identities=8% Similarity=-0.054 Sum_probs=148.6 Q ss_pred CCCCCCCCCCCc---h-h-------------hccccccceEEEEcC-CccccccchhHHHHhhhhhcCcceeccccHHHH Q lcl|Aclame:pro 1 MSKKKGKTLQPA---A-K-------------KMTASAPKMEAFTFG-EPVPVLDRRDILDYVECISNGRWYEPPISFTGL 62 (344) Q Consensus 1 msk~~~~~~~~~---~-~-------------~~~~~~~~~~~~~~~-~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l 62 (344) |-.-.+++.-.. . . ........-....|. .|.....+.++..+...+ ..+- T Consensus 1 ~~r~~~~~~~~dr~i~~~~~~~~~~~~~~~~~y~aa~~~r~~~~w~~~~~~~s~~~~i~~~~~~l-----------r~Ra 69 (505) T protein:vir:96 1 MKRAEKKPSLAQRMVNWAWYRYVEPQKNAARAFEAARRDRLGKAWLRRASRLSADEEIYADLASL-----------VQRA 69 (505) T ss_pred CCCCccccchhhcccchhhhhhHHHHHHhhhhcccccCCCccccccCCCCCCChHHHHHHHHHHH-----------HHHH Confidence 544333322000 0 0 000000000001111 111111111111111000 0001 Q ss_pred HHHhhcchhhhhhhhhhhhhHHH--------------------------------hcccC----CCCCHHHHHHHH-HHH Q lcl|Aclame:pro 63 AKSLRAAVHHSSPIYVKRNILAS--------------------------------TFIPH----PWLSQQDFSRFV-LDF 105 (344) Q Consensus 63 ~~~~~~~~~~~~~i~~~~~~~~~--------------------------------~~~pn----~~~~~~~f~~~~-~~~ 105 (344) ..+.+.+++..+++....++.+. ...++ ..++++.+..++ ..+ T Consensus 70 RdL~rNn~~a~~av~~~~~nvVG~~Gi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~~~D~~g~~~f~~lq~l~~r~~ 149 (505) T protein:vir:96 70 REQSINNPYAKRFYQLLKNNVIGPKGMTFQSRVKRRNGKPDDRANTLIEGNWQQWIKKGNCDVTGRYHFVTLLHLWMETL 149 (505) T ss_pred HHHHhcChHHHHHHHHHHHHhcCCCcceeeecCCcccccccHHHHHHHHHHHHHhcCCcCcceeccCCHHHHHHHHHHHH Confidence 11122222222222111111111 11223 344566666655 477 Q ss_pred HhcCCeEEEEEECCC-CceEEEEEecCcceeccc-----cCc--------------eEEEEcC----C---------ceE Q lcl|Aclame:pro 106 LVFGNAFLEKRYSTT-GKVIRLETSPAKYTRRGV-----EED--------------VYWWVPS----F---------NEP 152 (344) Q Consensus 106 ll~Gnay~~i~r~~~-G~~~~L~pl~~~~v~~~~-----~~~--------------~~y~~~~----~---------~~~ 152 (344) +..|.+|+.+.+... ..+..|..|+|..+.... ++. ..|++.. + ... T Consensus 150 ~~dGE~f~~~~~~~~~~~~~~lqliepd~l~~~~n~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~hPgd~~~~~~~~~~~~ 229 (505) T protein:vir:96 150 ARDGEVLVREHRGYPNKWGYALQILECDRLDLNYNADLQNGNRIRMSIELDAWERPVAYHLLVNHPGDNSYCYHYAGQTY 229 (505) T ss_pred hhCCceEEEEeecCCCCcceEEEEechhhcCCCCCcccCCcCeEEeceEECCCCceEEEEEeecCCCccccccccccccc Confidence 889999998876432 346678888887763221 111 1233321 1 123 Q ss_pred EEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhh Q lcl|Aclame:pro 153 TAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSK 232 (344) Q Consensus 153 ~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~ 232 (344) ..+++++|||+..+.--....|+|.+..+...+.-...-++....--+=.+...++|+.+.+...+...+. ..... T Consensus 230 ~rvpa~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~----~~~~~ 305 (505) T protein:vir:96 230 ERVPADEIIHTFVPWRPHQNRGIPWTHASMVELHHIGEYRKSEMIAAELGAKKVGFYEQDPEAYDQPPEDD----QGEIV 305 (505) T ss_pred cccCHhHhhhhhcccCCccccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCccCCCccccc----cCccc Confidence 45788999999876655678999999988877666555555444444555666678875433222211111 00000 Q ss_pred ccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHh-ccccccccccccHHHHHHHHHH- Q lcl|Aclame:pro 233 GRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLM-GGKPENVGSLGDIEKVAKVFVR- 310 (344) Q Consensus 233 g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~~~~~~n~e~~~~~f~~- 310 (344) -.-..|.+..|.+ |-+++.+..+.-..+|.+..+.....||+..|||-+.| |.. ++.+||++.+....|++ T Consensus 306 ~~l~pG~i~~L~p-----Ge~i~~~~~~~p~~~~~~f~~~~lr~iaaglgi~ye~lt~D~--s~~nYSS~R~~~~e~~r~ 378 (505) T protein:vir:96 306 EEVEAGTYQLLPY-----GIRFKEHKIDHPHTNFGAFVKSSLRGVAAGMGPAYNRLAHDL--EGVNFSSLRSGELDERDL 378 (505) T ss_pred cccCCceeeecCC-----CCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhccc--ccccHHHHHHHHHHHHHH Confidence 0122456666644 55677766665567899999999999999999998876 332 34678776666555543 Q ss_pred ----------HHHHHHHHHHHHHHHhhCCcceecccc-------------ccCCCCC Q lcl|Aclame:pro 311 ----------NELIPLQDRIREINGWLGQEVIRFKNY-------------SLDTDNG 344 (344) Q Consensus 311 ----------~~l~P~~~~ieeln~~L~~~~~~f~~y-------------~l~~~~~ 344 (344) .-++|+.+.+-+ ..+....+....+ ....-|- T Consensus 379 ~~~~q~~~~~~~~~pi~~~~l~--~a~l~G~i~~p~~~~~~~~~~~w~~p~~~~iDP 433 (505) T protein:vir:96 379 YKLLQFFVVTELLERVAGNLIS--MSLLTQALPLNMVDIDRLSQYAFQPRGWDWVDP 433 (505) T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHcCCcCCCCccchhhceeeeccCCccccCh Confidence 344454443321 1111111111111 1110110 No 124 >protein:vir:1986 Length: 512 # NCBI annotation: Hypothetical protein # Family: family:all:313 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050633;genbank:gi:9633520;genbank:GeneID:2636304 Probab=98.69 E-value=1e-07 Score=58.86 Aligned_cols=323 Identities=11% Similarity=0.001 Sum_probs=173.1 Q ss_pred CCCCCCCCCCCchhhcccc------ccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHH-HHHhhcchhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTAS------APKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGL-AKSLRAAVHHS 73 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~------~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l-~~~~~~~~~~~ 73 (344) ||+=--+.-.|........ +.....++ +.|..-|+-..+-..+.-..+++. .. ...| ....+.++|.. T Consensus 1 m~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~gltp~~l~~iL~~a~~gd~-~~---~~~L~~dm~~~D~hi~ 75 (512) T protein:vir:19 1 MGRILDISGQPFDFDDEMQSRSDELAMVMKRTQ-EHPSSGVTPNRAAQMLRDAERGDL-TA---QADLAFDMEEKDTHLF 75 (512) T ss_pred CcceeCCCCCccccccccccccchhcccchhhc-cccccCCCHHHHHHHHHHhhCCCH-HH---HHHHHHHHHhhChHHH Confidence 7654333222222111100 00000111 123333333333233322222322 11 1111 23334566777 Q ss_pred hhhhhhhhhHHHh---cccCCCCCH----------------HHHHHHH---HHHHhcCCeEEEEEE---CCCCceEEEEE Q lcl|Aclame:pro 74 SPIYVKRNILAST---FIPHPWLSQ----------------QDFSRFV---LDFLVFGNAFLEKRY---STTGKVIRLET 128 (344) Q Consensus 74 ~~i~~~~~~~~~~---~~pn~~~~~----------------~~f~~~~---~~~ll~Gnay~~i~r---~~~G~~~~L~p 128 (344) +++..++.-++.. ..|+...+. ..|..++ .+.+++|.+.++++. ++...|..|.+ T Consensus 76 s~l~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~f~~~~~~lldA~~~G~s~~Ei~w~~~~g~~~~~~~~~ 155 (512) T protein:vir:19 76 SELSKRRLAIQALEWRIAPARDASAQEKKDADMLNEYLHDAAWFEDALFDAGDAILKGYSMQEIEWGWLGKMRVPVALHH 155 (512) T ss_pred HHHHHHHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhhcceeeeeEeeeeCCceeeeeeee Confidence 7776665544432 223222111 0133333 455679999999976 44456788999 Q ss_pred ecCcceeccccCceEEEEcCC-ceEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCce Q lcl|Aclame:pro 129 SPAKYTRRGVEEDVYWWVPSF-NEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGY 207 (344) Q Consensus 129 l~~~~v~~~~~~~~~y~~~~~-~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~g 207 (344) .++.+.....+......+..+ .....+++...|..++.......+|.+.+..+......-..+.++...|...-+.|-- T Consensus 156 r~~~~f~~~~~~~~~lr~~~~~~~G~~l~~~k~i~~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~ 235 (512) T protein:vir:19 156 RDPALFCANPDNLNELRLRDASYHGLELQPFGWFMHRAKSRTGYVGTNGLVRTLIWPFIFKNYSVRDFAEFLEIYGLPMR 235 (512) T ss_pred eccccceeccCCCcEEEecCCCCCceeecCCceEEEeccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCee Confidence 999888776665544443332 2334566655443333333456799999999999999999999999999999999988 Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHH Q lcl|Aclame:pro 208 IMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQL 287 (344) Q Consensus 208 il~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~ 287 (344) +-+++. ..+++++++|.+.+.+..+ ++ .+|+.. ...++++..+. ....-|.+.-++-..+|+++ . T Consensus 236 igky~~-~a~~~ek~~L~~al~~~~~--~a--~~iiP~---~~~ie~~ea~~-~~~~~y~~li~~~d~~Isk~------i 300 (512) T protein:vir:19 236 VGKYPT-GSTNREKATLMQAVMDIGR--RA--GGIIPM---GMTLDFQSAAD-GQSDPFMAMIGWAEKAISKA------I 300 (512) T ss_pred EEecCC-CCCHHHHHHHHHHHHHHhh--Cc--EEEecC---CceEEEeecCC-CCHHHHHHHHHHHHHHHHHH------H Confidence 888753 4678888888888876532 22 233322 22445555432 33345888888888999986 3 Q ss_pred hccccc-c-ccc--cccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccc-----------cccCCCCC Q lcl|Aclame:pro 288 MGGKPE-N-VGS--LGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKN-----------YSLDTDNG 344 (344) Q Consensus 288 lg~~~~-~-~~~--~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~-----------y~l~~~~~ 344 (344) +|..-+ + +++ ++. .+....-....+...++.++ .||+.|-...+.+|. +.|+..+- T Consensus 301 LGqtlTs~~g~~Gs~a~-~~vh~ev~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~~~~~~p~~~f~~~e~ 372 (512) T protein:vir:19 301 LGGTLTTEAGDKGARSL-GEVHDEVRREIRNADVGQLARSINRDLIYPLLALNSDSTIDINRLPGIVFDTSEA 372 (512) T ss_pred hhhhhcccccccchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEecCCCh Confidence 554421 1 122 232 22233344555566667776 577766443333221 12333333 No 125 >protein:vir:98816 Length: 446 # NCBI annotation: hypothetical protein # Family: family:all:32558 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851097;genbank:gi:117530254;genbank:GeneID:4484480 Probab=98.68 E-value=2.6e-08 Score=62.16 Aligned_cols=327 Identities=9% Similarity=0.024 Sum_probs=158.4 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCcccccc--chhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLD--RRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYV 78 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~ 78 (344) |--|-.+.++-...-.+...+...+..+-+|.++|+ +.+.+.|+++.. ++.+.++|..+++.. T Consensus 3 ~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~D~~lr~~gg~~~~~~~l~~---------------~m~e~D~~v~s~l~~ 67 (446) T protein:vir:98 3 MEVRNAPTPAIRRRTIYAMEHLGLATSYLSEDGGYKRAGKPTYQQLSAWD---------------EAAQTEPIIAQGLDS 67 (446) T ss_pred ccccCCCchhhhhhhhhccccchhhcccCCcchHhhhcCCChHHHHHHHH---------------HHHhcchHHHHHHHH Confidence 554443332221111122222222333446666654 345555655431 111122222222222 Q ss_pred hhhhHHHh---cccCC------------CCCHHHHHHHHHHHHhcCCeEEEEEECCC---Cce-------EEEEEecCcc Q lcl|Aclame:pro 79 KRNILAST---FIPHP------------WLSQQDFSRFVLDFLVFGNAFLEKRYSTT---GKV-------IRLETSPAKY 133 (344) Q Consensus 79 ~~~~~~~~---~~pn~------------~~~~~~f~~~~~~~ll~Gnay~~i~r~~~---G~~-------~~L~pl~~~~ 133 (344) ++.-++.. ..|-. .+........+.+.+.+|.++.|++.... ..| +.+.|+++.. T Consensus 68 Rk~av~~~~w~V~p~~~~~a~~v~~~l~~~~~~~~~~~~ldai~~G~s~~Eivw~~~~g~~~p~~~~d~~~~~~~~~~r~ 147 (446) T protein:vir:98 68 IALSVLNKVGPYQHGDKRIKKFIDDQLRNRAKTWISHCVKSIMTYGFSLSEQIYAHGARDNMPATVLDDIVNYHPLQVML 147 (446) T ss_pred HHHHhhcCCceecCccHHHHHHHHHHHhhcCchhHHHHHHHHHhhCceeeeEEEeecccccccchhhcccccccccccee Confidence 21111100 00100 01112233346688889999999987531 112 2334444322 Q ss_pred eecccc----Cc-----e-----------------EEEEcCCceEEEEecccEEEecCCCCCCCccccccchhhHHHHHH Q lcl|Aclame:pro 134 TRRGVE----ED-----V-----------------YWWVPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWL 187 (344) Q Consensus 134 v~~~~~----~~-----~-----------------~y~~~~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~ 187 (344) .....+ +. . .......+....++....+|+++....+..||.|.+..+.-.... T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iP~~kfi~~~~~~~~~~p~G~gLlr~~~w~~~f 227 (446) T protein:vir:98 148 IANDNGRIVDGDTVTASQYKSGYWVPLPPYRIGDPPKKVDVVGSHVRLPSHKRLFINYNTKGNNPWGTSCLTSVLDYSIF 227 (446) T ss_pred eeccCCccccccccchhhcccccccCcccchhhhhhhhcccCcccccccccceEEEEecCCCCCccccchHHHHHHHHHH Confidence 110000 00 0 000112233455777787777766555668999999999999999 Q ss_pred HHHHHHHHHHHHHhcCCCceEEEeCCCCCCH--------HHHHHHHHHH-HHhhccccccccccccCCCccccceeeecc Q lcl|Aclame:pro 188 NESATLFRRKYYENGAHAGYIMYVTDAVQDR--------NDIEMLRENM-VKSKGRNNFKNLFLYAPQGKADGIKIIPLS 258 (344) Q Consensus 188 ~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~--------e~~~~lk~~~-~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~ 258 (344) -..+.++...|...-+.|--+.+++.+...+ ++.+...+.+ ++....+..+. +++.....++|++++=++ T Consensus 228 K~~~~~~w~~f~E~yG~P~~vGkyp~ga~~~~~~~~~~~~~~~~~~~~L~~av~~~~~da~-~ii~~~~~P~g~eie~~e 306 (446) T protein:vir:98 228 KRAFRDMMLIALDRYGTPLIYVIVPPGNTGVVEEAPDGTEITTTIAEQAEDALRRLSTDSG-LVLTQLSKEQPVQVGALT 306 (446) T ss_pred HHhhHHHHHHHHhHcCCceeEEeecCCCCcccccchhHHHHHHHHHHHHHHHHHhccccce-eeeecccCCCCceEEeec Confidence 9999999999999999998888886432211 1122233333 33322222221 222111224566665444 Q ss_pred cchh-HHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceecc- Q lcl|Aclame:pro 259 EVAT-KDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFK- 335 (344) Q Consensus 259 ~~~~-d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~- 335 (344) .... -..|.+.-++-..+|+++.-..---+|...+.+++++=.+..+. -..+-+.--++.++ .||+.|-...+.+| T Consensus 307 a~~~~~~~~~~~i~~~d~~IskaiLg~~Ltl~~~~~~~GS~ala~vh~~-V~~d~~~aDa~~i~~tln~~Li~~l~~lNf 385 (446) T protein:vir:98 307 TGNNFSDSFERAISLCDNNMLMGMGIPNLLVQNRETTFGTGRASEIQLE-LFDGKINSIFDTVIHAFTEQVIGNLIRLNF 385 (446) T ss_pred cccCChhhHHHHHHHHHHHHHHHHhcccccccccccccchhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC Confidence 3322 23477888888899999876654444443333333332333333 33444566666776 47776633333222 Q ss_pred ------------ccccCCCCC Q lcl|Aclame:pro 336 ------------NYSLDTDNG 344 (344) Q Consensus 336 ------------~y~l~~~~~ 344 (344) ...+++.|. T Consensus 386 ~~~~~~~~~~~~~~~~~~~e~ 406 (446) T protein:vir:98 386 DPALYPLASNTGYITRLPGRA 406 (446) T ss_pred CccccccccccccceeccCCh Confidence 224444454 No 126 >protein:vir:79233 Length: 526 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469155;genbank:gi:157834998;genbank:GeneID:5648814 Probab=98.62 E-value=1.8e-07 Score=57.50 Aligned_cols=323 Identities=10% Similarity=0.030 Sum_probs=171.7 Q ss_pred CCCCCCCCCCCchh-----hccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHH-HHhhcchhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAK-----KMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLA-KSLRAAVHHSS 74 (344) Q Consensus 1 msk~~~~~~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~-~~~~~~~~~~~ 74 (344) |++=--+.-+|... ..+++-.......-+.|..-|+-..+-..+.-...|+.. . ...|- ++.+.++|..+ T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~-~---~~~L~edm~e~D~~i~s 76 (526) T protein:vir:79 1 MAQIVDVYGNPIRPQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQ-A---QAELFMDMEERDAHLFA 76 (526) T ss_pred CCeeeCCCCCccCccccchhhhhhhhhhhhhcccCCCCCcCHHHHHHHHHHhhCCCHH-H---HHHHHHHHHhhChHHHH Confidence 66422221111110 001100000011111232223222222332222233221 1 11222 23345677777 Q ss_pred hhhhhhhhHHHh---cccCCCCCH----------------HHHHHHH---HHHHhcCCeEEEEEECCC---CceEEEEEe Q lcl|Aclame:pro 75 PIYVKRNILAST---FIPHPWLSQ----------------QDFSRFV---LDFLVFGNAFLEKRYSTT---GKVIRLETS 129 (344) Q Consensus 75 ~i~~~~~~~~~~---~~pn~~~~~----------------~~f~~~~---~~~ll~Gnay~~i~r~~~---G~~~~L~pl 129 (344) ++..++.-++.. ..|+..-+. ..|..++ .+.+.+|.+..+++.... -.+..|.+. T Consensus 77 ~l~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~ldA~~~G~s~~Ei~w~~~~g~~~~~~l~~r 156 (526) T protein:vir:79 77 EMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPLAFHHR 156 (526) T ss_pred HHHHHHHHHhCCCceEecCCCCChHHHHHHHHHHHHHhcccCHHHHHHHHHhhhhhcceeEEEEEeecCCceeEEEeeee Confidence 777666555432 233221111 1133444 455679999999986543 347789999 Q ss_pred cCcceeccccCceEEEEcCC-ceEEEEeccc-EEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCce Q lcl|Aclame:pro 130 PAKYTRRGVEEDVYWWVPSF-NEPTAFAPGS-VFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGY 207 (344) Q Consensus 130 ~~~~v~~~~~~~~~y~~~~~-~~~~~~~~~e-ViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~g 207 (344) ++.+.+...+......+..+ .....+++.. |+|. +.......+|.+.+..+......-..+.++...|...-++|-- T Consensus 157 ~~~~F~~~~~~~~~l~~~~~~~~g~~l~~~k~iv~~-~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~F~E~yG~P~~ 235 (526) T protein:vir:79 157 PQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHR-PRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIR 235 (526) T ss_pred cccceEeccCCCcEEEecCCCCCceeecCCceEEEe-ecCCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCceE Confidence 99888877666655544333 3445566654 5554 4434456789999999999999999999999999999999988 Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHH Q lcl|Aclame:pro 208 IMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQL 287 (344) Q Consensus 208 il~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~ 287 (344) +.+++. ..++++++++.+.+.+..+ ++ .+|+.. ...+++...+. ..-.-|.+.-++-.++|+++. T Consensus 236 igky~~-~a~~~ek~~L~~av~~i~~--da--~~iiP~---~~~ie~~ea~~-~~~~~f~~li~~~d~~Isk~i------ 300 (526) T protein:vir:79 236 LGKYPP-GTADEEKATLLRAVTGLGH--AA--AGIIPE---TMAIDFQQAAQ-GSSEPFLAMMRQSEDAISKAV------ 300 (526) T ss_pred EEecCC-CCCHHHHHHHHHHHHHHhc--Cc--EEEecC---CceeEEeecCC-CCHHHHHHHHHHHHHHHHHHH------ Confidence 888764 4578888888888766532 22 233322 23455665443 223447888888888998853 Q ss_pred hccccc------cccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceecccc-----------ccCCCCC Q lcl|Aclame:pro 288 MGGKPE------NVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNY-----------SLDTDNG 344 (344) Q Consensus 288 lg~~~~------~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~y-----------~l~~~~~ 344 (344) +|.+-+ +.++++..+.. ..-....+.--++.++ .||+.|-...+.+|.. .+++.+- T Consensus 301 LGqtlTs~~~~g~~gS~a~g~vh-~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~~~~e~ 374 (526) T protein:vir:79 301 LGGTLTSTTSQSGGGAFALGQVH-NEVRHDILASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQ 374 (526) T ss_pred hhhhhccccccCcchhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEeCCCCc Confidence 444311 12233322222 3334444555666666 4777663333332211 2222232 No 127 >protein:vir:6382 Length: 553 # NCBI annotation: portal protein Lambda B # Family: family:all:47 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918995;genbank:gi:34610170;genbank:GeneID:2559575 Probab=98.51 E-value=2.9e-08 Score=61.89 Aligned_cols=322 Identities=8% Similarity=0.003 Sum_probs=146.9 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEc----------C--CccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhc Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTF----------G--EPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRA 68 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~----------~--~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 68 (344) |-+...+.....+.......+......+ . .|...-...++..+...+ ..+...+.+. T Consensus 1 m~~~~~r~~~~~a~~~~~~~~~~~~~~y~gA~~~~r~~~~w~~~~~s~~~~~~~~~~~l-----------r~RaRdL~rN 69 (553) T protein:vir:63 1 MTKVTVRKLSEVTSGRPEQSASLGGGGLEGASRLSRETVSWNPSLRSPDALINPLKRIA-----------DARGRDMADN 69 (553) T ss_pred CcchhhhhhcccccccchhhhhhhcccccccccCCCcccccccCCCChHHHHHHHHHHH-----------HHHHHHHHhc Confidence 5555444433222111100000000011 1 111111111111111100 0011122222 Q ss_pred chhhhhhhhhhhhhHHH------------------------------------hccc------CCCCCHHHHHHHHH-HH Q lcl|Aclame:pro 69 AVHHSSPIYVKRNILAS------------------------------------TFIP------HPWLSQQDFSRFVL-DF 105 (344) Q Consensus 69 ~~~~~~~i~~~~~~~~~------------------------------------~~~p------n~~~~~~~f~~~~~-~~ 105 (344) +++..+++.....+.+. ...+ ...++++.+..++. .+ T Consensus 70 n~~a~~av~~~~~nvVG~Gi~~~~~~~~~~l~g~~~~~~~~~~~~ie~~w~~wa~~~~~~~D~~g~~~f~~~q~l~~r~~ 149 (553) T protein:vir:63 70 DGFTNGAVGYQRDSIVGAQYRLNSMPDINVIPGATEEWAEEYQTIVEAKFELYAESLACYIDNAAISTFTGLIRLGVVGY 149 (553) T ss_pred ChHHHHHHHHHHHhhccCCceeeeccchhhhcCCCHHHHHHHHHHHHHHHHHhcCCccceeeccccCCHHHHHHHHHHHH Confidence 22222222211111111 1111 13345666666554 77 Q ss_pred HhcCCeEEEEEECCC-C--ceEEEEEecCcceeccc---cCc--------------eEEEEcC---C--------c---- Q lcl|Aclame:pro 106 LVFGNAFLEKRYSTT-G--KVIRLETSPAKYTRRGV---EED--------------VYWWVPS---F--------N---- 150 (344) Q Consensus 106 ll~Gnay~~i~r~~~-G--~~~~L~pl~~~~v~~~~---~~~--------------~~y~~~~---~--------~---- 150 (344) +..|.+|+.+.+... | .+..|..|+|.++.... ++. .-|.+.. + + T Consensus 150 ~~dGE~~~~~~~~~~~~~~~~~~lq~ie~drl~~~~~~~~~~~i~~GVE~d~~Gr~vaY~i~~~hPgd~~~~~~~~~~~~ 229 (553) T protein:vir:63 150 VKTGEVLATAEWDRAANRPYATCFQMVSTDRLSNPYQQLDTPTLRRGVQYDKRGRPQGYWIQVAHPGDLYQMAPDMYKWK 229 (553) T ss_pred HhCCceEEEeeeccCCCCcccceEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEeeccCCCcccccccccccee Confidence 889999998875432 2 24678888887663221 111 1233311 1 0 Q ss_pred ---eEEEEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 151 ---EPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLREN 227 (344) Q Consensus 151 ---~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~ 227 (344) ....+++.+|||+..+.--....|+|.+..+...+.-...-++....--+=.+...++|+.+. -++...+.+... T Consensus 230 r~~~~~~v~a~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~daeL~~a~i~A~~a~fi~~~~--~~~~~~~~~~~~ 307 (553) T protein:vir:63 230 FVQQSKPWGRRQVIHILEPREPDQSRGIADIVSGLKDMRMAKRFKEMSLQNAVINASYAAAIESEL--PPEFIHSQMSGG 307 (553) T ss_pred eeccccccChhHheecccccCCCcccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCC--Chhhhhhhcccc Confidence 122467889999987654567899999998887766655554444444444555667776432 122222222211 Q ss_pred HH----------------Hhh-c----cccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHH Q lcl|Aclame:pro 228 MV----------------KSK-G----RNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQ 286 (344) Q Consensus 228 ~~----------------~~~-g----~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~ 286 (344) .. ... | .-..|.+..|.+ |-+++.+..+---.+|.+..+.....||+.+|||-+ T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~p-----Ge~i~~~~p~~p~~~~~~F~~~~lr~iaaglGi~Ye 382 (553) T protein:vir:63 308 SPNADMVGIFGKYMDALKAYVGGANNIQIDGAKIPHLFP-----GTKLNLKPMGTPGGVGSEFEASLNRHLASAFGMSYE 382 (553) T ss_pred cccccccccccccccccccccccccceeecCceeeecCC-----CCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHH Confidence 10 000 0 012456666644 445665555544567889999999999999999988 Q ss_pred Hh-ccccccccccccHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhCCcceecccc--ccCCC-----CC Q lcl|Aclame:pro 287 LM-GGKPENVGSLGDIEKVAKVFVR-----------NELIPLQDRIREINGWLGQEVIRFKNY--SLDTD-----NG 344 (344) Q Consensus 287 ~l-g~~~~~~~~~~n~e~~~~~f~~-----------~~l~P~~~~ieeln~~L~~~~~~f~~y--~l~~~-----~~ 344 (344) .| |.. ++.+||++.+....|.+ .-++|+.+.|-+ ..+....+..-.+ ++.++ +. T Consensus 383 ~lt~D~--s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~--~a~l~G~i~~p~~~~~~~~~~p~~~~a 455 (553) T protein:vir:63 383 EFTRDF--SKANYSSIQAGIAMTRRFLEGRKKMCADRLATEFFTLWLE--EAIAAGEVPMPPGQTRDLFYQPLMKEA 455 (553) T ss_pred HHhhhc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCCccCCCcccchhhcchhhhhh Confidence 76 432 34678877655555543 334444333311 1111111111111 00011 11 No 128 >protein:vir:3420 Length: 533 # NCBI annotation: capsid component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040583;genbank:gi:9626247;genbank:GeneID:2703526 Probab=98.51 E-value=6.7e-08 Score=59.92 Aligned_cols=324 Identities=8% Similarity=-0.021 Sum_probs=145.9 Q ss_pred CCCCCCCC--------CCCchhhccccccc-eE-EEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcch Q lcl|Aclame:pro 1 MSKKKGKT--------LQPAAKKMTASAPK-ME-AFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAV 70 (344) Q Consensus 1 msk~~~~~--------~~~~~~~~~~~~~~-~~-~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 70 (344) |...--+. +..........++. .. .-.|- |...-...++..+...+ ..+-..+.+.++ T Consensus 1 ~~~p~~~~~~~~~~~~~~~~~~~y~~~a~~~~~~~~~w~-p~~~s~~~~~~~~~~~l-----------r~RaRdl~rNn~ 68 (533) T protein:vir:34 1 MKTPTIPTLLGPDGMTSLREYAGYHGGGSGFGGQLRSWN-PPSESVDAALLPNFTRG-----------NARADDLVRNNG 68 (533) T ss_pred CCCchhhhhhcccccchHHHHHhhhhccCCCCCcccccc-cCCCCHHHHHHHHHHHH-----------HHHHHHHHhcCh Confidence 33221100 00000011111111 00 01111 11111111111111100 000111112222 Q ss_pred hhhhhhhhhhhhHHH-----------------------------------hccc------CCCCCHHHHHHHH-HHHHhc Q lcl|Aclame:pro 71 HHSSPIYVKRNILAS-----------------------------------TFIP------HPWLSQQDFSRFV-LDFLVF 108 (344) Q Consensus 71 ~~~~~i~~~~~~~~~-----------------------------------~~~p------n~~~~~~~f~~~~-~~~ll~ 108 (344) +..+++....++.+. ...+ ...++++.+..++ ..++.. T Consensus 69 ~a~~av~~~~~nvVG~Gi~~~~~p~~~~lg~~~~~~~~~~~~ie~~w~~w~~~~~~~~D~~g~~~f~~~q~l~~r~~~~d 148 (533) T protein:vir:34 69 YAANAIQLHQDHIVGSFFRLSHRPSWRYLGIGEEEARAFSREVEAAWKEFAEDDCCCIDVERKRTFTMMIREGVAMHAFN 148 (533) T ss_pred HHHHHHHHHHHHhhCCCceeeeccchhhcCCChhHHHHHHHHHHHHHHHhhcCccceeccccccCHHHHHHHHHHHHHhC Confidence 221111111111111 1112 2244566666655 477889 Q ss_pred CCeEEEEEECCC-C--ceEEEEEecCcceeccc---cCc---------------eEEEEcC--Cc----------eEEEE Q lcl|Aclame:pro 109 GNAFLEKRYSTT-G--KVIRLETSPAKYTRRGV---EED---------------VYWWVPS--FN----------EPTAF 155 (344) Q Consensus 109 Gnay~~i~r~~~-G--~~~~L~pl~~~~v~~~~---~~~---------------~~y~~~~--~~----------~~~~~ 155 (344) |++|+.+.+... | .+..|..++|..+.... ++. .|+.... .+ ....+ T Consensus 149 GE~f~~~~~~~~~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v 228 (533) T protein:vir:34 149 GELFVQATWDTSSSRLFRTQFRMVSPKRISNPNNTGDSRNCRAGVQINDSGAALGYYVSEDGYPGWMPQKWTWIPRELPG 228 (533) T ss_pred CceEEEeeeccCCCCccceEEEEechhhcCCCCCCCCCCceEeeeEECCCCCeEEEEEeecCCCCccccccceeeeeecc Confidence 999999876543 2 25678888887664211 111 1333211 11 12235 Q ss_pred ecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCC----------CCHHHHHHHH Q lcl|Aclame:pro 156 APGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAV----------QDRNDIEMLR 225 (344) Q Consensus 156 ~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~----------l~~e~~~~lk 225 (344) ++.+|||+..+.--....|+|.+..+...+.....-++....--+=.+.-.++|+.+.+. ..++..+.+. T Consensus 229 ~a~~VlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (533) T protein:vir:34 229 GRASFIHVFEPVEDGQTRGANVFYSVMEQMKMLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFILGANSQEQRERLT 308 (533) T ss_pred ChhHeeeeccccCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeeecCCCcccccccccCCCccccccccc Confidence 578999998776556789999999888777666555555554455556667777643221 0111112222 Q ss_pred HHHHH---hhcc----ccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhcccccccccc Q lcl|Aclame:pro 226 ENMVK---SKGR----NNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSL 298 (344) Q Consensus 226 ~~~~~---~~g~----~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~ 298 (344) ..... ..++ -..|.+..|.+ |-+++.++.+-...+|.+..+.....||+.+|||-+.|-. .-++.+| T Consensus 309 ~~~~~~~~~~~~~~~~l~pG~i~~L~p-----Ge~i~~~~~~~p~~~~~~f~~~~lr~iAaglGi~ye~lt~-D~s~~nY 382 (533) T protein:vir:34 309 GWIGEIAAYYAAAPVRLGGAKVPHLMP-----GDSLNLQTAQDTDNGYSVFEQSLLRYIAAGLGVSYEQLSR-NYAQMSY 382 (533) T ss_pred ccchhhhhccCcceeeccCceeeecCC-----CCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhh-hcccccH Confidence 11111 1110 12355666643 5566666655556778889999999999999999887732 1134678 Q ss_pred ccHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhCCcceecccc-ccCCCCC Q lcl|Aclame:pro 299 GDIEKVAKVFVR-----------NELIPLQDRIREINGWLGQEVIRFKNY-SLDTDNG 344 (344) Q Consensus 299 ~n~e~~~~~f~~-----------~~l~P~~~~ieeln~~L~~~~~~f~~y-~l~~~~~ 344 (344) |++.+....|.+ .-++|+.+.|- ...+....+..... .+++.+. T Consensus 383 SS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl--~~ail~G~i~~p~~~~~~~~~~ 438 (533) T protein:vir:34 383 STARASANESWAYFMGRRKFVASRQASQMFLCWL--EEAIVRRVVTLPSKARFSFQEA 438 (533) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcCcccCCCccCCCchhh Confidence 877655555433 33344444332 11111122221111 1222222 No 129 >protein:vir:99853 Length: 488 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164068;genbank:gi:56692600;genbank:GeneID:3192581 Probab=98.50 E-value=4.4e-07 Score=55.45 Aligned_cols=311 Identities=11% Similarity=0.045 Sum_probs=156.6 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) ++|+- .....+.......... +|.++-. .+..+++.- ...+.. .+ ...+. .++|..+++..++ T Consensus 1 v~~~~---l~~e~at~~~~~d~~~--~~~~~l~-~~~~~il~~---a~~g~~-----~~--y~~l~-~D~~i~s~l~~rk 63 (488) T protein:vir:99 1 MEKPA---LGREIATSGDGRDITR--PFISGLQ-VPNDSILQR---RGGNDL-----RV--YEEIL-SDAQVKTVWGQRQ 63 (488) T ss_pred CCccc---hhHHHHHHHhhhhhhc--cccCCCC-CCChHHHHh---hccCCH-----HH--HHHHh-hChHHHHHHHHHH Confidence 22221 1111110000000000 1111100 011111110 001110 00 01111 2334444443333 Q ss_pred hhHHHh---cccCCC-----------------CCHHHHHHHHHHHHhcCCeEEEEEECCC---CceEEEEEecCcceecc Q lcl|Aclame:pro 81 NILAST---FIPHPW-----------------LSQQDFSRFVLDFLVFGNAFLEKRYSTT---GKVIRLETSPAKYTRRG 137 (344) Q Consensus 81 ~~~~~~---~~pn~~-----------------~~~~~f~~~~~~~ll~Gnay~~i~r~~~---G~~~~L~pl~~~~v~~~ 137 (344) ..++.. ..|+.. +.+..+-.-+.+.+++|.++.++++... -.+..|.+.|+.+.... T Consensus 64 ~av~~~~w~i~p~~~~~~~~~~ae~v~~~l~~~~~~~~l~~~lda~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~d 143 (488) T protein:vir:99 64 LAVVSREWKVEAGGDRPIDQAAAEHLEQQLQRVGWDRVTSKMLFGVFYGYAVSELIYGRDDRYITLEAIKVRNRRRFRYD 143 (488) T ss_pred HHHhcCCceEEcCCCChHHHHHHHHHHHHHhCCCHHHHHHHHHhhhhhcceeEEEEEeecCCeeeEeeeeeecccceeec Confidence 222211 112211 1222222333466789999999987543 34678999999988877 Q ss_pred ccCceEEEEcCC-ceEEEEec--ccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCC Q lcl|Aclame:pro 138 VEEDVYWWVPSF-NEPTAFAP--GSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDA 214 (344) Q Consensus 138 ~~~~~~y~~~~~-~~~~~~~~--~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~ 214 (344) .++...+....+ .....++. .=|+|..... ....+|.+.+..+......-....++...|...-++|--+-+++.. T Consensus 144 ~~~~l~~~~~~~~~~g~~lp~~~~~i~~~~~~~-~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~ 222 (488) T protein:vir:99 144 QDGGLRLLTPNNMFEGEPCPAPYFWHFSTGADN-DDEPYGLGLAHWLYWPVFFKRNGIKFWLIFLDKFGMPTAVGRYDDK 222 (488) T ss_pred CCCceEEeccCCCCCccccccCceEEEEeecCC-CCCcccchHHHHHHHHHHHHHhhHHHHHHHHHHcCCceeeeecCCC Confidence 666655554433 23344533 2355554443 3467899999999999999999999999999999999888887644 Q ss_pred CCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhcccc-- Q lcl|Aclame:pro 215 VQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKP-- 292 (344) Q Consensus 215 ~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~-- 292 (344) ..++++++++.+.+.+..+ ++ .+|+.. ...+++...+... -.-|.+.-++-.++|+++. +|.+- T Consensus 223 ~a~~~ek~~l~~av~~~~~--~~--~~viP~---~~~ie~~ea~~~~-~~~~~~li~~~d~~Isk~i------LGqtlts 288 (488) T protein:vir:99 223 TATPEDKAKLLAALHAIQT--DS--AIIMPA---GMQAELLEAGRSG-TADYKTLHDTMDATIAKVG------LGQVAST 288 (488) T ss_pred CCCHHHHHHHHHHHHHHhc--Cc--EEEecC---CceeEEeecCCCC-hHHHHHHHHHHHHHHHHHH------hhhhhcc Confidence 4678888888877766532 22 233322 2345565544332 2347788888888898863 33332 Q ss_pred -ccccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCcceeccc-------cccCCCCC Q lcl|Aclame:pro 293 -ENVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKN-------YSLDTDNG 344 (344) Q Consensus 293 -~~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~~~~~f~~-------y~l~~~~~ 344 (344) .++++++-.+.. ..-....+...++.++ .+|+.|....+.+|. +.+++.+. T Consensus 289 ~~~~Gs~a~~~vh-~~v~~d~~~aDa~~i~~tln~~li~~l~~~N~~~~~~p~~~~~~~e~ 348 (488) T protein:vir:99 289 QGTPGRLGNDDLQ-ADVRLDLVKADADLICESFNLGPARWLTEWNFPGAQPPRVYRVIEEP 348 (488) T ss_pred cccccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcCCceeEecCCCc Confidence 122233333333 3334555666677776 477665333333221 12222222 No 130 >protein:vir:95542 Length: 548 # NCBI annotation: Putative portal protein # Family: family:all:47 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293348;genbank:gi:148912769;genbank:GeneID:5228194 Probab=98.41 E-value=1.8e-08 Score=63.09 Aligned_cols=320 Identities=8% Similarity=-0.064 Sum_probs=141.5 Q ss_pred CCCCCCCCC--CCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTL--QPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYV 78 (344) Q Consensus 1 msk~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~ 78 (344) .|=++..++ ++.....=..++...... +-|...-....+..+...+ ..+-..+.+.+++..+++.. T Consensus 11 ~sP~~a~~R~~ar~~~~~y~aa~~~r~~~-~~~~~~s~~~~i~~~~~~l-----------r~RaRdL~rNn~~a~~av~~ 78 (548) T protein:vir:95 11 LAPELVARRLAAREAIQAYEAARPGRTHK-AKRQPLGADTSLQKSAVSM-----------REQCRKLDEDHDLVTGLLDR 78 (548) T ss_pred cchHHHHHHHHhHHHhccccccCcccccc-ccCCCCChHHHHHHHHHHH-----------HHHHHHHHhcChHHHHHHHH Confidence 110000000 000000000011100000 0010000011111110000 00111112222222111111 Q ss_pred hhhhHHH-------------------------------hc---ccCCCCCHHHHHHHH-HHHHhcCCeEEEEEECCC--- Q lcl|Aclame:pro 79 KRNILAS-------------------------------TF---IPHPWLSQQDFSRFV-LDFLVFGNAFLEKRYSTT--- 120 (344) Q Consensus 79 ~~~~~~~-------------------------------~~---~pn~~~~~~~f~~~~-~~~ll~Gnay~~i~r~~~--- 120 (344) ..++.+. +. --...++++.+..++ ..++..|.+|+.+.+... T Consensus 79 ~~~nvVG~~G~~i~p~~l~~d~~~a~~l~~~ie~~w~~Wa~~~D~~g~~~f~~lq~l~~R~~~~dGE~f~~~~~~~~~~~ 158 (548) T protein:vir:95 79 LEERVVGGSGIGVEPLPLRLDGSVHAELAMEIRSAWAEWSLSPETSGELTRPQVERLMCRTWLRDGEGLAQKLMGRVPNY 158 (548) T ss_pred HHHhccCccccceeeeecCCCHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHHhCCceEEEeeecccccc Confidence 1111111 11 112245566666654 477889999998876432 Q ss_pred ----CceEEEEEecCcceecccc---------------Cc-eEEEEcC-----------CceEEEEecccEEEecCCCCC Q lcl|Aclame:pro 121 ----GKVIRLETSPAKYTRRGVE---------------ED-VYWWVPS-----------FNEPTAFAPGSVFHLLEPDIN 169 (344) Q Consensus 121 ----G~~~~L~pl~~~~v~~~~~---------------~~-~~y~~~~-----------~~~~~~~~~~eViH~r~~~~~ 169 (344) ..+..|..|+|.++....+ +. .-|++.. ......+++++|||+..+.-- T Consensus 159 ~~g~~~~~~lqliepd~l~~~~~~~~~~i~~GIE~D~~Grp~aY~i~~~hPgd~~~~~~~~~~~rvpA~~VlHif~~~r~ 238 (548) T protein:vir:95 159 TFATSVPFALELLEPDYLPFSYNNLSKGIVQGIERDTWRRKRAYHLLKDHPGNLQTLGGSLAVKRVEAERIIHIAYRKRI 238 (548) T ss_pred cCCcccceEEEEechhhcCCCCCCCCCceeeeeEECCCCceEEEEEeecCCCcccccccccceeeechhHheecccccCC Confidence 2466888888877632111 11 1233321 123456899999999877545 Q ss_pred CCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhcccccccc-ccccCCCc Q lcl|Aclame:pro 170 QELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNL-FLYAPQGK 248 (344) Q Consensus 170 ~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~-~vl~~~~~ 248 (344) ....|+|.+..+...+.....-++....--+=.+...++|+.+++... ..+.....-...... ..|.+ ..|. T Consensus 239 gQ~RGvs~lapvl~~l~~l~~y~dael~~aki~A~~a~fi~~~~~~~~--~~~~~~~~~~~~~~~-~pG~iv~~L~---- 311 (548) T protein:vir:95 239 GQNRGVPMLHAVLIRLADLKDYEESERVAARISAALAMYIKKGNPDSY--TVEPGKDRKNRTIPI-APGMVFDDLE---- 311 (548) T ss_pred ccccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCccc--cCCCCcccccccccc-cCCccccccC---- Confidence 678899999988877766555555544444555666777775432111 100000000000001 12332 2343 Q ss_pred cccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHH-----------HHHHHH Q lcl|Aclame:pro 249 ADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRN-----------ELIPLQ 317 (344) Q Consensus 249 ~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~-----------~l~P~~ 317 (344) .|-+++.++.+.-...|.+..+.....||+.+|||-+.|-.- -+++||++.+....|++. -++|+. T Consensus 312 -pGe~i~~~~p~~p~~~~~~f~~~~lr~IAaglGipYe~ltgD--~s~nYSS~R~~l~e~~r~~~~~q~~~i~~~~~Pi~ 388 (548) T protein:vir:95 312 -PGEDVGMIESNRPNPFLEGFRNGQLRMIGAGTRSTYSSVSRA--YDGTYSAQRQELVEGWLGYDLLQHEFIDYWCRPVY 388 (548) T ss_pred -CCceeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 355666666554566799999999999999999998877542 235888777666655443 333433 Q ss_pred HHHHHHHHhhCCcceecccc--------------ccCCCCC Q lcl|Aclame:pro 318 DRIREINGWLGQEVIRFKNY--------------SLDTDNG 344 (344) Q Consensus 318 ~~ieeln~~L~~~~~~f~~y--------------~l~~~~~ 344 (344) +.|- ...+....+....| ....-|- T Consensus 389 ~~wl--e~a~l~G~i~lP~~~~~~~~~~~~W~~P~~~~iDP 427 (548) T protein:vir:95 389 RSWL--QMYLLARKERLPADVDHRTLYAAVYQGPVMPWINP 427 (548) T ss_pred HHHH--HHHHHcCCcCCCCCCCchhheeeeeecCCccccCh Confidence 3321 11111111111111 1110011 No 131 >protein:vir:96068 Length: 765 # NCBI annotation: conserved hypothetical protein ORF017 # Family: family:all:297 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294434;genbank:gi:149408331;genbank:GeneID:5237187 Probab=98.41 E-value=7.3e-07 Score=54.24 Aligned_cols=323 Identities=9% Similarity=0.045 Sum_probs=136.9 Q ss_pred CCCCCC-------CCCCCchhhc-cccccc--eEEEEcC--Ccccccc-------chhHHHHhhhhhcCcceecc-ccHH Q lcl|Aclame:pro 1 MSKKKG-------KTLQPAAKKM-TASAPK--MEAFTFG--EPVPVLD-------RRDILDYVECISNGRWYEPP-ISFT 60 (344) Q Consensus 1 msk~~~-------~~~~~~~~~~-~~~~~~--~~~~~~~--~p~~~~~-------~~~v~~~~~~~~~~~~~~~p-~~~~ 60 (344) |-+..+ .-..+..... ....+. +-+-+.. ++...+. ...+.. .. ..++.+. +.-+ T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ds~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~f~gy 111 (765) T protein:vir:96 37 MIKLGKIRGWNVEPEKAPVIRSVKDFLEPGLSVAMDSAYGDGPTPAAKAAAGGQNPYVVPT----ML-QDWYNSQGFIGY 111 (765) T ss_pred chhHHHHhhcccccccCCCCCCCCcccCcccceeccccccccccchHHHhhhccCccchhh----HH-HhhhcccCCccH Confidence 110000 0000000000 000000 0000000 0000000 000000 00 0111111 1113 Q ss_pred HHHHHhhcchhhhhhhhhhhhhHHHhc-----ccCCC---------------CCHHHHHHHHHHHHhcCCeEEEEEEC-- Q lcl|Aclame:pro 61 GLAKSLRAAVHHSSPIYVKRNILASTF-----IPHPW---------------LSQQDFSRFVLDFLVFGNAFLEKRYS-- 118 (344) Q Consensus 61 ~l~~~~~~~~~~~~~i~~~~~~~~~~~-----~pn~~---------------~~~~~f~~~~~~~ll~Gnay~~i~r~-- 118 (344) ++..+++.+..-..++.......+... ..+.. --...|...+...-++|.+|+.+.-+ T Consensus 112 ql~alY~~~~l~rkiVd~pAeDa~R~g~~I~~~~~e~~~~~~~~l~~~~~rl~v~~~l~ea~~~~RlyGga~i~i~i~~~ 191 (765) T protein:vir:96 112 QACAIISQHWLVDKACSMSGEDAARNGWELKSDGRKLSDEQSALIARRDMEFRVKDNLVELNRFKNVFGVRIALFVVESD 191 (765) T ss_pred HHHHHHHhCchhhhhhhcchHHhhcCCceeecCccccCHHHHHHHHHHHHHhhHHHHHHHHHHHhhhceeeEEEEEeccc Confidence 344445444443333322222111100 00000 00111222233345789999877532 Q ss_pred --------------CCCceEEEEEecCcceeccc------c--Cce-----EEEEcCCceEEEEecccEEEecCCC---- Q lcl|Aclame:pro 119 --------------TTGKVIRLETSPAKYTRRGV------E--EDV-----YWWVPSFNEPTAFAPGSVFHLLEPD---- 167 (344) Q Consensus 119 --------------~~G~~~~L~pl~~~~v~~~~------~--~~~-----~y~~~~~~~~~~~~~~eViH~r~~~---- 167 (344) ..|....|..+++..+.... + ... +|.+. + ..+.++-|||+.+.. T Consensus 192 D~~~l~~PL~~~~I~kg~~kgl~vldp~~~~~~~v~e~~~Dp~sp~fg~P~~y~i~--g--~~IH~SRli~~~g~~lpd~ 267 (765) T protein:vir:96 192 DPDYYEKPFNPDGIAPGSYKGISQIDPYWAMPQLTAESTADPSAEHFYEPDFWIIS--G--KKYHRSHLVVVRGPQPPDI 267 (765) T ss_pred CcchhhccccccccccceeeEEEEechhhcccccchhccccccccccCcceeeeec--C--ceeccceEEEecCCCchhh Confidence 12345567777776554321 1 111 33332 2 246788899987543 Q ss_pred --CCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCC-CCCHHHHHHHHHHHHHhhcccccccccccc Q lcl|Aclame:pro 168 --INQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDA-VQDRNDIEMLRENMVKSKGRNNFKNLFLYA 244 (344) Q Consensus 168 --~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~-~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~ 244 (344) +..+++|.|.++.+.+.|.....+......++...... ++++... .+. ..+.+.+.++......+..++++++ T Consensus 268 lk~~~~~~G~Svlq~~yd~I~~~~~t~~~~a~Ll~k~~~~--v~k~~~~~~l~--~~~~l~~r~~~~~~~r~n~g~~~id 343 (765) T protein:vir:96 268 LKPTYIFGGIPLTQRIYERVYAAERTANEAPLLAMSKRTS--TIHVDVEKAIA--NEDAFNARLAFWIANRDNHGVKVIG 343 (765) T ss_pred hccccCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccc--eeeechHhhhc--cHHHHHHHHHHHHHhcCCceeEEec Confidence 22356799999999999988888887777777765543 4454321 122 1234555554432222234556665 Q ss_pred CCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHH-------HHHHHHH Q lcl|Aclame:pro 245 PQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVR-------NELIPLQ 317 (344) Q Consensus 245 ~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~-------~~l~P~~ 317 (344) .+ + +|+.++.+..+ +-+......++||++.+||...|=.... .+..++-|...+.||. ..|.|.+ T Consensus 344 ~e---e--~~e~~s~~lsg--l~d~l~~~~~~iAaas~IP~t~LfGqsp-~GlnATGe~D~~nYyD~I~s~Qe~~l~p~l 415 (765) T protein:vir:96 344 ID---E--TMEQFDTNLSD--FDSVIMNQYQLVAAIAKTPATKLLGTSP-KGFNATGEHETISYHEELESIQEHIFDPLL 415 (765) T ss_pred CC---c--ceeEEecccCC--HHHHHHHHHHHHHhhhCCCeeeeccCCc-ccccCcchHHHHHHHHHHHHHHHHHHHHHH Confidence 42 3 35555444443 3344556678999999999976632211 1122344666666766 4456655 Q ss_pred HHHHHHHHhhCC--cceeccccccCCCCC Q lcl|Aclame:pro 318 DRIREINGWLGQ--EVIRFKNYSLDTDNG 344 (344) Q Consensus 318 ~~ieeln~~L~~--~~~~f~~y~l~~~~~ 344 (344) +++-++--+-+. ..|.|....|..=+. T Consensus 416 e~L~~li~~s~~i~~d~~i~FnpL~~~se 444 (765) T protein:vir:96 416 ERHYLLLAKSESIDVQLEIVWNPVDSTTS 444 (765) T ss_pred HHHHHHHHHhcCCCCcceEEeCCCCCCCH Confidence 554332211111 123333333332222 No 132 >protein:vir:10321 Length: 495 # NCBI annotation: ORF23 # Family: family:all:47 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758916;genbank:gi:27311190;genbank:GeneID:956137 Probab=98.12 E-value=3.8e-06 Score=50.33 Aligned_cols=318 Identities=9% Similarity=0.002 Sum_probs=138.6 Q ss_pred CCCCCCCCCCCchhhccc-------cccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTA-------SAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHS 73 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~-------~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~ 73 (344) |+--.+-..++....... .++.+. .+.++-......++..+... -..+...+.+.+++.. T Consensus 1 m~~~~~~~~a~~~~~~~~~~~~~y~aa~~~~--~~~~~~~~s~d~~~~~~~~~-----------lr~RaRdl~rNn~~a~ 67 (495) T protein:vir:10 1 MNMTPSGYQSLASGLLVPVGASAYEGASGGH--RWQDIGDYGPDTAVASGIQT-----------LRARSHHNVRNNPWAT 67 (495) T ss_pred CCcccccccccchhhhhHHHhhhhhccccCc--ccCCCCCCChhHHHHHHHHH-----------HHHHHHHHHhcChHHH Confidence 443333332222221111 011110 01110000001111111100 0111223334444443 Q ss_pred hhhhhhhhhHHHhc-c--------------------------cCCCCCHHHHHHHH-HHHHhcCCeEEEEEEC--CCC-- Q lcl|Aclame:pro 74 SPIYVKRNILASTF-I--------------------------PHPWLSQQDFSRFV-LDFLVFGNAFLEKRYS--TTG-- 121 (344) Q Consensus 74 ~~i~~~~~~~~~~~-~--------------------------pn~~~~~~~f~~~~-~~~ll~Gnay~~i~r~--~~G-- 121 (344) +++....++.+.+. + -...++++.+..++ ..++..|++|+.+... ..| T Consensus 68 ~av~~~~~~vVG~Gi~p~~~~~~~~~~~~ie~~w~~wa~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~~g~~ 147 (495) T protein:vir:10 68 NAVATWVAAAVGNGLTPRWRMKEQELRQELQELWGDWVNEADFDEVQSFYGLQALVVRTVINSGEAFVIKKPRPLSEGLS 147 (495) T ss_pred HHHHHHHHhhcCCCcccccCCchHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHHhCCceEEEEeecccCCCCc Confidence 33333322222210 1 12245566666654 4778899999987643 233 Q ss_pred ceEEEEEecCcceecc------ccCc--------------eEEEE-c---CC-------ceEEEEecccEEEecCCCCCC Q lcl|Aclame:pro 122 KVIRLETSPAKYTRRG------VEED--------------VYWWV-P---SF-------NEPTAFAPGSVFHLLEPDINQ 170 (344) Q Consensus 122 ~~~~L~pl~~~~v~~~------~~~~--------------~~y~~-~---~~-------~~~~~~~~~eViH~r~~~~~~ 170 (344) .+..|..++|.++... .++. ..|.+ . .+ .+...+++++|||+....+ . T Consensus 148 ~~~~lqliepd~l~~~~~~~~~~~g~~i~~GIe~d~~Gr~vaY~i~~~hpgd~~~~~~~~~~~rvpA~~vlH~f~~r~-g 226 (495) T protein:vir:10 148 VPLQLQIIEPDMLASDIPDETLPSGGYVKGGIRFSNGGKRKAYCFYRNHPAESSLIGDPVDTVWIKAEHVLHVTVLTV-R 226 (495) T ss_pred cceEEEEechhhcCCCCCCCCCCCCCEEEeceEECCCCceEEEEEeecCCCcccccccccceeeechhheEeccccCC-C Confidence 4678888888776421 0111 12332 1 11 1345689999999965443 5 Q ss_pred CccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhh----ccccccccccccCC Q lcl|Aclame:pro 171 ELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSK----GRNNFKNLFLYAPQ 246 (344) Q Consensus 171 ~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~----g~~n~~~~~vl~~~ 246 (344) ...|+|.+.. ...+.-....++....--+=.+...++|+.+++ ++..-..+-..-.... -.-..|.+..|.+ T Consensus 227 Q~RGis~la~-i~~l~~l~~y~dael~~a~i~A~~~~fi~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~p- 302 (495) T protein:vir:10 227 SDAGAPWFQL-LLRLNELDQYEDAELVRKKTAALFAAFIQEATA--DSTGGPTIGQPKRSKGGKRITGLNPGTLQYLQP- 302 (495) T ss_pred cccCcchhHH-HHHHHHhhHHHHHHHHHHHHhhhheeeeecCCC--ccccccccCccccccCcccceecCCceeeecCC- Confidence 6789985543 333333222222222223334555667664322 1111110000000000 0123356666644 Q ss_pred CccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHh-ccccccccccccHHHHHHHHHHHH------------H Q lcl|Aclame:pro 247 GKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLM-GGKPENVGSLGDIEKVAKVFVRNE------------L 313 (344) Q Consensus 247 ~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~~~~~~n~e~~~~~f~~~~------------l 313 (344) |.+++.++.+..-..|.+..+.....||+.+|||-+.| |.. ++.+||++.+....|.+.. + T Consensus 303 ----Ge~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~Ye~ltgD~--s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~ 376 (495) T protein:vir:10 303 ----GQEVKFSNPADVGTTYEPWLRYQLLSIAKGYGITYEMLTGDL--RGVNYSSIRAGLLEFRRLCQQVQHHMIIHQFC 376 (495) T ss_pred ----CCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhccc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 55566666554456788888999999999999999987 433 3467887776665554332 2 Q ss_pred HHHHHHHHHHHHhhCCcceeccc---------------cccCCCCC Q lcl|Aclame:pro 314 IPLQDRIREINGWLGQEVIRFKN---------------YSLDTDNG 344 (344) Q Consensus 314 ~P~~~~ieeln~~L~~~~~~f~~---------------y~l~~~~~ 344 (344) +|+.+.| +...+....+.... ......|- T Consensus 377 ~pi~~~~--l~~a~l~G~i~~p~~~~~~~~~~~~~w~~p~~~~vDP 420 (495) T protein:vir:10 377 RPVGRWF--MDFAVASGAVVIPDYLQRRRYYNRVSWRTPRWEEVDP 420 (495) T ss_pred HHHHHHH--HHHHHHcCCCCCCCchhhhHhhhccccccCCccccCh Confidence 2322222 11111111121111 11111111 No 133 >protein:vir:78161 Length: 355 # NCBI annotation: hypothetical protein # Family: family:all:2372 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294798;genbank:gi:149882819;genbank:GeneID:5309189 Probab=97.91 E-value=1.1e-05 Score=47.84 Aligned_cols=224 Identities=10% Similarity=0.010 Sum_probs=116.2 Q ss_pred EEEEEECCC-C--ceEEEEEecCccee---ccccCce--EEEEc-CCceEEEEecccEEEecCCCCCCCccccccchhhH Q lcl|Aclame:pro 112 FLEKRYSTT-G--KVIRLETSPAKYTR---RGVEEDV--YWWVP-SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSAL 182 (344) Q Consensus 112 y~~i~r~~~-G--~~~~L~pl~~~~v~---~~~~~~~--~y~~~-~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~~~~~ 182 (344) +.||+.... | .|..|.+.++.++. ...++.. ..+.. .+.....+++...|+.++.......+|.+.+..+. T Consensus 1 v~Eivw~~~~g~~~~~~l~~r~~~~~~~f~~~~~~~l~~~~~~~~~g~~~~~lp~~kfi~~~~~~~~g~p~G~gLlr~~~ 80 (355) T protein:vir:78 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) T ss_pred CeEEEEEeeCCeEEEeeeeecCccceeeeeeccCCceeEEEecCCCCCCcceeccCCEEEEEeCCCCCCccchhhHHHHH Confidence 778876543 3 36778888887543 2333332 22222 23344567776666555443345678999999999 Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEEEeC-CCCCC-----------HHHHHHHHHHHHHhhccccccccccccCCCccc Q lcl|Aclame:pro 183 NSAWLNESATLFRRKYYENGAHAGYIMYVT-DAVQD-----------RNDIEMLRENMVKSKGRNNFKNLFLYAPQGKAD 250 (344) Q Consensus 183 ~~i~~~~aa~~~~~~~f~ng~~p~gil~~~-~~~l~-----------~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~ 250 (344) .....-....++...|...-+.|--+.+.+ +.... ++.++.+....+....+.+++ +|+ +. T Consensus 81 w~~~fK~~~~~~w~~f~Er~g~g~p~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~i~~g~~a~--~ii-----p~ 153 (355) T protein:vir:78 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAG--GYI-----PH 153 (355) T ss_pred HHHHHHHhhHHHHHHHHHHcCCCceEEEecCCCCcccchhhhHHHHHHHHHHHHHHHHHHhhCCccee--Eee-----cC Confidence 999999999999999998763333333332 11111 222333444444443333332 233 34 Q ss_pred cceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCC Q lcl|Aclame:pro 251 GIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQ 329 (344) Q Consensus 251 gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~L~~ 329 (344) |++++-+........+.+.-++-.++|+++.--. .+-....+++++++- .+....-..+.+.-.++.++ .||+.|.. T Consensus 154 g~~ie~~ea~g~~~~~~~~i~~~d~~Isk~iLGq-tlTs~~~~~gGS~Al-g~vh~~v~~~~~~aD~~~i~~~ln~~li~ 231 (355) T protein:vir:78 154 GANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAH-FLTLGGDKSTGSYAL-GDTFASFFTGSLNAVMKHIADVTQQHVVE 231 (355) T ss_pred CceEEEeecCCCcccHHHHHHHHHHHHHHHHhhh-hhccccCCccchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 5555555555555567778888888898865332 111111111122222 22233334444555556665 36665422 Q ss_pred cce-----------eccccccCCCCC Q lcl|Aclame:pro 330 EVI-----------RFKNYSLDTDNG 344 (344) Q Consensus 330 ~~~-----------~f~~y~l~~~~~ 344 (344) ..+ +|.....+-++- T Consensus 232 ~l~~lN~~~~~~~P~~~~~~~~~~~~ 257 (355) T protein:vir:78 232 DLVDQNWGPEEPAPRLVPAQLGKEQP 257 (355) T ss_pred HHHHhcCCCCCCCCEEEecCcChhHH Confidence 221 121111221211 No 134 >protein:vir:9751 Length: 422 # NCBI annotation: putative structural protein # Family: family:all:524 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795513;genbank:gi:28876291;genbank:GeneID:1257832 Probab=97.67 E-value=2.2e-05 Score=46.15 Aligned_cols=286 Identities=10% Similarity=0.052 Sum_probs=112.8 Q ss_pred ccchhH-------------HHHhhhhhcCcc--eeccccH-HHHHHHhhc-chhhhhhhhhhhhhHHHhcccCCCCCHHH Q lcl|Aclame:pro 35 LDRRDI-------------LDYVECISNGRW--YEPPISF-TGLAKSLRA-AVHHSSPIYVKRNILASTFIPHPWLSQQD 97 (344) Q Consensus 35 ~~~~~v-------------~~~~~~~~~~~~--~~~p~~~-~~l~~~~~~-~~~~~~~i~~~~~~~~~~~~pn~~~~~~~ 97 (344) |....+ +....-+..+.- -..+..+ ..+..+.+. ...-..++..-........-..+.-.... T Consensus 1 m~~~~i~~L~~~~~~~~~r~~~~~~yy~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~~Vd~~a~rl~~~Gf~~~d~~l~~ 80 (422) T protein:vir:97 1 MNYMGMGYLRRKLALFKTGVDKRYRYYAMDDRDDTRSIVMPNNVREMYRSVLEWTAKGVDSLADRIIFREFTNDDFNAWE 80 (422) T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhcCccccHHHHHHHHhhcchhHHHHHHHHhccccceeeCCchhHHH Confidence 333221 111111122211 0111111 112112111 11111111111111101100001000111 Q ss_pred ----------HHHHHHHHHhcCCeEEEEEECC-CCceEEEEEecCcceeccccCce--------EEEEcCCceE---EEE Q lcl|Aclame:pro 98 ----------FSRFVLDFLVFGNAFLEKRYST-TGKVIRLETSPAKYTRRGVEEDV--------YWWVPSFNEP---TAF 155 (344) Q Consensus 98 ----------f~~~~~~~ll~Gnay~~i~r~~-~G~~~~L~pl~~~~v~~~~~~~~--------~y~~~~~~~~---~~~ 155 (344) ..++..+.+.+|.+|+.+.++. .|.| .+.+++|..+....+... +|.....|.. ..+ T Consensus 81 ~w~~N~ld~~~~~~~~~al~~G~sf~~v~~~~~~~~p-~i~~~sp~~~~~i~D~~~~~~~~a~~~~~~~~~~~~~~~~~~ 159 (422) T protein:vir:97 81 IFKANNPDIFFDTAIQSALIASCCFVYIMPGAEDGLP-KMQVIEASKATGILDPTTFLLTEGYAILESDSNGNPTLEAYF 159 (422) T ss_pred HHHhcChHHHHHHHHHHHHHhcceeEEEeeCCCCCee-EEEEechhhEEEEEeCCCCcceeeEEEEEecCCCcEEEEEEE Confidence 1234467899999999999874 5655 578888877654333220 1111111111 011 Q ss_pred ecc---------------------cEEEecCCCCCCCccccccch----hhHHHHHHHHHHHHHHHHHHHhcCCCceEEE Q lcl|Aclame:pro 156 APG---------------------SVFHLLEPDINQELYGLPEYL----SALNSAWLNESATLFRRKYYENGAHAGYIMY 210 (344) Q Consensus 156 ~~~---------------------eViH~r~~~~~~~~~G~sp~~----~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~ 210 (344) ... -|++|.+..-....+|.|.+. .+.+.+.-...-......||.+ |--++ T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~~e~~a~---pqr~i- 235 (422) T protein:vir:97 160 TDKDIWYYPKKGKPYNIKNPTGHPLLVPIIHRPDAVRPFGRSRITKAGMYHQKAAKRTLERAEVTAEFYSF---PQKYV- 235 (422) T ss_pred cCceEEEEcCCCccccccCCCCCcceEEecccCCCccccCccccchhHHHHHHHHHHHHHHHHHHHHHhcc---hhhhh- Confidence 111 255665432234567888652 2233333222222333344433 33233 Q ss_pred eCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhcc Q lcl|Aclame:pro 211 VTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGG 290 (344) Q Consensus 211 ~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~ 290 (344) .|...+....+ .|+.. .++++.+..+.+.++.++..+....-+ .|++..+.....|+++=++|++.+|. T Consensus 236 -~G~d~d~~~~~----~~~~~-----~~~i~~~~~de~~~~~~v~q~~~~~l~-~~~~~l~~~~~~~a~~s~lP~~~lg~ 304 (422) T protein:vir:97 236 -LGMDPDAKPME----KWRAT-----VSTLLEISKDEDGDKPTVGQFTTASMA-PFMEHLKMYASLFAGGSGLTLDDLGF 304 (422) T ss_pred -cccCcccccCc----hhhhh-----hhhhhccCCCCCCCcceeeecCCCChh-HHHHHHHHHHHHHhcccCCCHHHhcc Confidence 23211121122 23222 234555544333345666555433322 39999999999999999999999998 Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----------------cceeccccccCC--C---CC Q lcl|Aclame:pro 291 KPENVGSLGDIEKVAKVFVRNELIPLQDRIREINGWLGQ----------------EVIRFKNYSLDT--D---NG 344 (344) Q Consensus 291 ~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ieeln~~L~~----------------~~~~f~~y~l~~--~---~~ 344 (344) ...+.++...++. ...|+..+.+.-+++++. ...+...+++++ . +. T Consensus 305 ~~~NpsSa~Ai~a--------~~~~L~~ka~~k~~~fg~~l~~~~rla~~~~~~~~~~~~~~~~~~~~w~p~~~~ 371 (422) T protein:vir:97 305 PSDNPSSVESIKA--------AHENLRAAGRKAQRSFSSGFLNVAYIAVCLRDEFPYLRNQFMDTVIKWEPLFEA 371 (422) T ss_pred ccCchhHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhccceEEEccCCCC Confidence 5432232222222 233333332222222111 111111111111 1 11 No 135 >protein:vir:9568 Length: 410 # NCBI annotation: gp34 # Family: family:all:524 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862873;genbank:gi:32469465;genbank:GeneID:1461310 Probab=97.57 E-value=4.3e-05 Score=44.53 Aligned_cols=287 Identities=11% Similarity=0.071 Sum_probs=111.8 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCc-ceeccccH-HHHHHHhh-cchhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGR-WYEPPISF-TGLAKSLR-AAVHHSSPIY 77 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~-~~~~p~~~-~~l~~~~~-~~~~~~~~i~ 77 (344) |+..+.| +....+|.+ +.. +-..++.+ ..+....+ ....-..++. T Consensus 1 l~~~~~r-----------------------------~~~~~~yY~---g~~~~~~~~~~~p~~~~~~~~~v~nw~~~~Vd 48 (410) T protein:vir:95 1 MNLYQSR-----------------------------VNLRYKHYA---MQHYEAPTGITIPAHIRAKYQAVLGWAAKGVD 48 (410) T ss_pred CCcchhh-----------------------------HHHHHHHhc---CCCCccccchhccHHHHhHHHhhcchhHHHHH Confidence 2222111 111122211 110 00011110 01111111 0111111111 Q ss_pred hhhhhHHHhcccCCCCCH----------HHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCce----- Q lcl|Aclame:pro 78 VKRNILASTFIPHPWLSQ----------QDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV----- 142 (344) Q Consensus 78 ~~~~~~~~~~~pn~~~~~----------~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~----- 142 (344) .-...+....-.++.... ....+...+.+.+|.+|+.+..+.+|.| .+.+++|..+....+... T Consensus 49 s~a~rl~~~Gf~~~d~~l~~i~~~N~ld~~~~~~~~~al~~G~sf~~v~~~~d~~~-~i~~~sP~~~~~i~Dp~~~~~~~ 127 (410) T protein:vir:95 49 SLADRLIFRAFANDDFNVTEIFDRNNPDIFFDSAILSALIGSCSFVYISKGEDDEV-RLQVIESSNATGVIDPITGLLVE 127 (410) T ss_pred HhHhhhccccccCCCchHHHHHhhcChHHHHHHHHHHHHHhCceeEEEecCCCCce-EEEEEcccceEEEEeCCCCceEE Confidence 111100000000000001 1122445688899999999999888875 577888876654333210 Q ss_pred E---EEEcCCceE---EEEeccc---------------------EEEecCCCCCCCccccccc----hhhHHHHHHHHHH Q lcl|Aclame:pro 143 Y---WWVPSFNEP---TAFAPGS---------------------VFHLLEPDINQELYGLPEY----LSALNSAWLNESA 191 (344) Q Consensus 143 ~---y~~~~~~~~---~~~~~~e---------------------ViH~r~~~~~~~~~G~sp~----~~~~~~i~~~~aa 191 (344) . +....++.. ..+.++. |++|.+..-.+..+|.|.| ..+.+.+.-...- T Consensus 128 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~~~l~~~~G~s~I~~~v~~l~da~~r~~~~ 207 (410) T protein:vir:95 128 GYAVLARDDYNRPTLEAYFEPNATHFIPKDGEPYSVTNETGIPLLVPVIHRPDAVRPFGRSRITRAGMYYQKYAKRTLER 207 (410) T ss_pred EEEEEEecCCCeEEEEEEEeCCcEEEEeeCCccccccCCCCCcceEEecccccCCccCCccccchhHHHHHHHHHHHHHH Confidence 0 111111111 1122222 4555432112345676644 3333333333333 Q ss_pred HHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHH-HHHHH Q lcl|Aclame:pro 192 TLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDD-FFNIK 270 (344) Q Consensus 192 ~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q-~~e~~ 270 (344) ......||. .|--++. |...+.+..+ .|+.. .++++.+..+.+.++.++..+.. .+++ |++.. T Consensus 208 ~~~~~e~~a---~pqr~i~--G~d~d~~~~~----~~~~~-----~~~i~~~~~~~~~~~~~v~q~~~--~~l~~~~~~l 271 (410) T protein:vir:95 208 ADITAEFYS---WPQKYIL--GLDPDAEPME----KWKAT-----VSSLLTISSSDKGVKPSVGQFTT--ASMSPFTEQL 271 (410) T ss_pred HHHHHHHhc---chhheee--ccCCCCCcCc----hhhhh-----hhhheeccCCCCCCcceEEecCC--CChHHHHHHH Confidence 334445553 3433332 3211222222 23222 23344444332223456655543 3344 99999 Q ss_pred hhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----------------cceec Q lcl|Aclame:pro 271 KASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIREINGWLGQ----------------EVIRF 334 (344) Q Consensus 271 ~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ieeln~~L~~----------------~~~~f 334 (344) +.....|+++=++|++.+|....+.++..-+.. ...|++.+.+.-+++++. ...+. T Consensus 272 ~~l~~~~a~~s~lP~~~lg~~~~NpsSa~Al~a--------~~~~L~~ka~~k~~~fg~~l~~~~rla~~i~~~~~~~~~ 343 (410) T protein:vir:95 272 RTAAAGFAGEMGLTLDDLGFVSDNPSSVEAIKA--------SHENLRLAGRKAQRSLGAGLLNVAYVAACLRDEFRYTRS 343 (410) T ss_pred HHHHHHHhhhcCCCHHHhccccCchhHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc Confidence 999999999999999999975432222212222 223333333222222111 00111 Q ss_pred cccccC--CC---CC Q lcl|Aclame:pro 335 KNYSLD--TD---NG 344 (344) Q Consensus 335 ~~y~l~--~~---~~ 344 (344) ..+.++ .. |. T Consensus 344 ~~~~~~v~W~p~~d~ 358 (410) T protein:vir:95 344 QFVRTAVKWEPLFEA 358 (410) T ss_pred ccceeeEEeeecCCc Confidence 111111 11 11 No 136 >protein:vir:94742 Length: 409 # NCBI annotation: putative portal protein # Family: family:all:524 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996701;genbank:gi:45597416;genbank:GeneID:2767966 Probab=97.53 E-value=5e-05 Score=44.15 Aligned_cols=288 Identities=11% Similarity=0.088 Sum_probs=111.3 Q ss_pred ccchhHHHHhhhh-------------hcCcc-e-eccccH-HHHHHHhhc-chhhhhhhhhhhhhHHHhcccCCCCC--- Q lcl|Aclame:pro 35 LDRRDILDYVECI-------------SNGRW-Y-EPPISF-TGLAKSLRA-AVHHSSPIYVKRNILASTFIPHPWLS--- 94 (344) Q Consensus 35 ~~~~~v~~~~~~~-------------~~~~~-~-~~p~~~-~~l~~~~~~-~~~~~~~i~~~~~~~~~~~~pn~~~~--- 94 (344) |....+-.....+ ..|.- + ..++.+ ..+....+. ...-..++..-.. ....+.+.+ T Consensus 1 ~~~~~i~~L~~~~~~~~~r~~~~~~yY~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~iVds~a~----rl~~~Gf~~~d~ 76 (409) T protein:vir:94 1 MTEKGIGYLRFKLSVHKRRAEMRYDQYAMKYVDRFKGITIPQALSQQYRSILGWCAKGVDSLAD----RLVFREFENDDF 76 (409) T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHhcccCchhhcChhhhHHHHHHHhhhcchhHHHHHHhHh----hcccCcccCCch Confidence 4433222111111 11211 0 000011 111111111 0111111111000 001111111 Q ss_pred -HHH----------HHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCce-----EEEEc---CCceE--- Q lcl|Aclame:pro 95 -QQD----------FSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV-----YWWVP---SFNEP--- 152 (344) Q Consensus 95 -~~~----------f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~-----~y~~~---~~~~~--- 152 (344) ... ..+...+.+.+|.+|+.+..+.+|+| .+.+++|..+....+... .|.+. ..+.. T Consensus 77 ~l~~i~~~N~ld~~~~~~~~~aliyG~sf~~v~~~~dg~~-~i~~~sp~~~~~i~D~~~~~~~~a~~~~~~d~~~~~~~~ 155 (409) T protein:vir:94 77 TVNEIFEENNPDIFFDSAVLSSLIASCSFTYISKGENDAV-RLQVIEAVNATGIIDPITGLLTEGYAVLERDENNNVVLE 155 (409) T ss_pred HHHHHHHhcChhHHHHHHHHHHHHhcceeEEEecCCCCce-EEEEeccceEEEEEecCCCceeeeEEEEEecCCCceEEE Confidence 111 12344578899999999999988875 677788876543322210 11111 00100 Q ss_pred EEEecc----------------------cEEEecCCCCCCCccccccch----hhHHHHHHHHHHHHHHHHHHHhcCCCc Q lcl|Aclame:pro 153 TAFAPG----------------------SVFHLLEPDINQELYGLPEYL----SALNSAWLNESATLFRRKYYENGAHAG 206 (344) Q Consensus 153 ~~~~~~----------------------eViH~r~~~~~~~~~G~sp~~----~~~~~i~~~~aa~~~~~~~f~ng~~p~ 206 (344) ..+.++ -|++|.+..-.+..+|.|.|. .+.+.+.-...-......||.+ |- T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~n~~g~vPvV~f~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~~e~~a~---pq 232 (409) T protein:vir:94 156 AHFLPDRTDYYYRDSRNNISIANPTGHPLLVPIIHRPDAVRPFGRSRITRSGMYWQSNAKRTLERADVTAEFYSF---PQ 232 (409) T ss_pred EEEecCcEEEEEecCceeEeeeCCCCCcceEEeccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHhcC---hh Confidence 011111 145665332234567888653 3333333333333344455544 43 Q ss_pred eEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHH-HHHHHhhhHHHHHHHhcCCH Q lcl|Aclame:pro 207 YIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDD-FFNIKKASAADLLDAHRIPF 285 (344) Q Consensus 207 gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q-~~e~~~~~~~~Ia~~fgVPp 285 (344) -++. |...+.+..+.++... ++++.+..+.+.++.++..+.. .+++ |++..+....+++++=++|+ T Consensus 233 r~i~--G~d~d~~~~~~~~~~~---------~~i~~~~~d~dg~~~~v~q~~~--~~l~~~~~~l~~~~~~~a~~t~lP~ 299 (409) T protein:vir:94 233 KYVT--GLSDDAEPMETWKATV---------SSMLQFTKDEDGDKPTLGQFTQ--PSMSPFTEQLRTAAAGFAGETGLTL 299 (409) T ss_pred heeE--ecCCCCcccchhhhhH---------HHhhcCCCCCCCCCceEEecCC--CChhHHHHHHHHHHHHHhhhcCCCH Confidence 3332 2211222222222221 2234333222223455555433 2333 99999999999999999999 Q ss_pred HHhccccccccccccHHHHHHHHHHHHHHHHH----HHHHHHHHhh----CC-cceeccccc--cCCC---CC Q lcl|Aclame:pro 286 QLMGGKPENVGSLGDIEKVAKVFVRNELIPLQ----DRIREINGWL----GQ-EVIRFKNYS--LDTD---NG 344 (344) Q Consensus 286 ~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~----~~ieeln~~L----~~-~~~~f~~y~--l~~~---~~ 344 (344) +.+|....+.++..-++.+.......+ .=.. ..|+++.+.. +. ...+...+. +.+. +. T Consensus 300 ~~lg~~~~NpsSa~Al~a~~~~L~~~a-~~k~~~fg~~~~~~~rla~~i~~~~~~~~~~~~~~~v~W~p~~~~ 371 (409) T protein:vir:94 300 DDLGFVSDNPSSVEAIKASHENLRLAG-RKAQRSLGAGLLNVAYLAACLRDDAPYLREQFRKTKPKWEPLFEA 371 (409) T ss_pred HHhccccCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCCccccccccceEEeccCCCc Confidence 999975433232222222221111111 0000 0112222211 10 001111111 1111 11 No 137 >protein:vir:1634 Length: 409 # NCBI annotation: Structural protein # Family: family:all:524 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695055;genbank:gi:23455746;genbank:GeneID:955506 Probab=97.34 E-value=9e-05 Score=42.76 Aligned_cols=280 Identities=13% Similarity=0.131 Sum_probs=112.5 Q ss_pred ccchhHH-------------HHhhhhhcCcce--eccccH-HHHHHHhhc-chhhhhhhhhhhhhHHHhcccCCCCC--- Q lcl|Aclame:pro 35 LDRRDIL-------------DYVECISNGRWY--EPPISF-TGLAKSLRA-AVHHSSPIYVKRNILASTFIPHPWLS--- 94 (344) Q Consensus 35 ~~~~~v~-------------~~~~~~~~~~~~--~~p~~~-~~l~~~~~~-~~~~~~~i~~~~~~~~~~~~pn~~~~--- 94 (344) |....+- ....-...+..- ..++.+ ..+....+. ...-..++..-.. ....+.+.+ T Consensus 1 ~~~~~i~~L~~~~~~~~~r~~~~~~yY~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~iVds~a~----rl~~~Gf~~~d~ 76 (409) T protein:vir:16 1 MTEKGIGYLRFKLSVHKRRAEMRYEQYAMKHVDRFKGITIPQALSQQYRSILGWCAKGVDSLAD----RLVFREFENDDF 76 (409) T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHhccCchhhcchhhhHHHHHHHhhhcChhHHHHHHhHh----hcccccccCcch Confidence 4433221 111111122110 001111 111111111 1111111111100 011111111 Q ss_pred -HHH----------HHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCce-----EEEE---cCCceE--- Q lcl|Aclame:pro 95 -QQD----------FSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV-----YWWV---PSFNEP--- 152 (344) Q Consensus 95 -~~~----------f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~-----~y~~---~~~~~~--- 152 (344) ... ..++..+.+.+|.+|+.+..+.+|+| .+.+++|..+....+... .+.+ ...+.. T Consensus 77 ~l~~i~~~N~ld~~~~~~~~~al~yG~sf~~v~~~~dg~~-~i~~~sP~~~~~i~D~~~~~~~~a~~~~~~d~~~~~~~~ 155 (409) T protein:vir:16 77 TVNEIFEENNPDIFFDSTVLSALIASCSFTYISKGENDAV-RLQVIEATNATGIIDPITGLLTEGYAVLERDENNNVVLE 155 (409) T ss_pred HHHHHHHhcChhHHHHHHHHHHHHhCceeEEEecCCCCce-EEEEEcccceEEEeecccccceeeeEEEEecCCCceEEE Confidence 111 12344578899999999999888875 677777766543322210 0110 001100 Q ss_pred EEEecc----------------------cEEEecCCCCCCCccccccc----hhhHHHHHHHHHHHHHHHHHHHhcCCCc Q lcl|Aclame:pro 153 TAFAPG----------------------SVFHLLEPDINQELYGLPEY----LSALNSAWLNESATLFRRKYYENGAHAG 206 (344) Q Consensus 153 ~~~~~~----------------------eViH~r~~~~~~~~~G~sp~----~~~~~~i~~~~aa~~~~~~~f~ng~~p~ 206 (344) ..+.++ -|++|.+..-.++.+|.|.| ..+.+.+.-...-......||.+ |- T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~~~~~~~~G~seI~~~v~~l~da~~r~~~~~~~~~e~~a~---pq 232 (409) T protein:vir:16 156 AHFLPDRTDYYYRDSRNNISIANPTGNPLLVPIIHRPDAVRPFGRSRITRSGMYWQSNAKRTLERADVTAEFYSF---PQ 232 (409) T ss_pred EEEecCcEEEEEecCccccceecCCCCcceEEecccccccccCCccccchhHHHHHHHHHHHHHHHHHHHHHhcC---hh Confidence 011111 14555533222456787754 33444444444444444555543 43 Q ss_pred eEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHH-HHHHHhhhHHHHHHHhcCCH Q lcl|Aclame:pro 207 YIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDD-FFNIKKASAADLLDAHRIPF 285 (344) Q Consensus 207 gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q-~~e~~~~~~~~Ia~~fgVPp 285 (344) -++. |...+.+..+ .|+... ++++.+....+.++.++..+.. .+++ |++..+.....++++=++|+ T Consensus 233 r~i~--G~d~d~~~~~----~~~~~~-----~~i~~~~~d~~g~~~~v~q~~~--~~l~~~~~~l~~~~~~~a~~s~lP~ 299 (409) T protein:vir:16 233 KYVT--GLSDDAEPME----TWKATV-----SSMLQFTKDEDGDKPTLGQFTQ--PSMSPFTEQLRTAAAGFAGETGLTL 299 (409) T ss_pred heeE--ecCCCCCccc----hhhhhh-----hHhhccCCCCCCCCceEEecCC--CChhHHHHHHHHHHHHHhhhcCCCH Confidence 3432 3211112222 232221 2344443332234456655543 3333 99999999999999999999 Q ss_pred HHhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc-------------------------ceeccccccC Q lcl|Aclame:pro 286 QLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIREINGWLGQE-------------------------VIRFKNYSLD 340 (344) Q Consensus 286 ~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ieeln~~L~~~-------------------------~~~f~~y~l~ 340 (344) +.+|....+.++..-+..+ ..|++.+.+.-++.++.- .++|.+- .+ T Consensus 300 ~~lg~~~~NpsSa~Ai~a~--------~~~L~~ka~~k~~~fg~~l~~~~rla~~~~~~~~~~~~~~~~~~v~W~~~-~~ 370 (409) T protein:vir:16 300 DDLGFVSDNPSSVEAIKAS--------HENLRLAGRKAQRSLGAGLLNVAYLAACLRDDVPYLREQFSKTKPKWEPL-FE 370 (409) T ss_pred HHcccccCchhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhccceEEecCC-CC Confidence 9999754332322222222 233333322222221110 0112110 00 Q ss_pred CC--------CC Q lcl|Aclame:pro 341 TD--------NG 344 (344) Q Consensus 341 ~~--------~~ 344 (344) .+ |+ T Consensus 371 ~~~~s~a~~aDa 382 (409) T protein:vir:16 371 ADASMLSLIGDG 382 (409) T ss_pred cchhhHHHHHHH Confidence 00 00 No 138 >protein:vir:95254 Length: 488 # NCBI annotation: Phage conserved protein # Family: family:all:2372 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944885;genbank:gi:158267601;genbank:GeneID:2744039 Probab=97.23 E-value=0.00012 Score=42.02 Aligned_cols=315 Identities=11% Similarity=0.047 Sum_probs=131.1 Q ss_pred CCCCCCCCCCCchhhccc----cccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTA----SAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPI 76 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i 76 (344) |.-.....+.-.+..... ...+-..-.|.+|.++|+.+..+. +-+..+.++|..+++ T Consensus 1 ~~~~~~~~~gl~p~rl~~i~~~~~~~~~~~~~~~~~~~Lr~~~~~~-------------------ly~~m~~D~hi~s~l 61 (488) T protein:vir:95 1 MADITETQESLPPFRMGEVGSLGLKVKNGRIYEEPRQALRFPESIK-------------------TFQLMMRDPAVAASV 61 (488) T ss_pred CCCccccCCCCCHHHHHHHHHHhhccccchhhccchhhhcccchHH-------------------HHHHHhhChHHHHHH Confidence 443333322222211000 000000111223333333211110 111111234444444 Q ss_pred hhhhhhHHHh---cccCCC----------------------CCHHHHHHHHHHHHhcCCeEEEEEECC------------ Q lcl|Aclame:pro 77 YVKRNILAST---FIPHPW----------------------LSQQDFSRFVLDFLVFGNAFLEKRYST------------ 119 (344) Q Consensus 77 ~~~~~~~~~~---~~pn~~----------------------~~~~~f~~~~~~~ll~Gnay~~i~r~~------------ 119 (344) ..++.-++.. ..|+.. .++..+-.-+.+.+++|-+.++++... T Consensus 62 ~~Rk~av~~~~w~v~p~~~~~~d~~~~~~a~~v~~~l~~~~~~~~~~i~~~lda~~~G~s~~Eivw~~~~~~~~~~~~~~ 141 (488) T protein:vir:95 62 NIIKMFVRKVNWRFVPPKGKEQDPKMLERADFFNSLMDDMEHDWADFINSVMSFCTYGFCVNEKVYKKRQGKKGKYQSKF 141 (488) T ss_pred HHHHHHHhcCCceEecCCCCchhHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccceeeeeeeeccccccccccccc Confidence 4333322221 122111 112222222345668899999998753 Q ss_pred -CC--ceEEEEEecCcce---eccccCceEEEEcC----------------CceEEEEeccc-EEEecCCCCCCCccccc Q lcl|Aclame:pro 120 -TG--KVIRLETSPAKYT---RRGVEEDVYWWVPS----------------FNEPTAFAPGS-VFHLLEPDINQELYGLP 176 (344) Q Consensus 120 -~G--~~~~L~pl~~~~v---~~~~~~~~~y~~~~----------------~~~~~~~~~~e-ViH~r~~~~~~~~~G~s 176 (344) +| .+..|.+.++... ....++........ ......+++.. |+|.... .....+|.+ T Consensus 142 ~dg~~~~~~i~~Rpq~~~~~f~~d~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~kfi~~~~~~-~~g~p~g~g 220 (488) T protein:vir:95 142 DDGLIGWAKLPIRNQSTLDKWYFDEDFRRVTGVRQNLRNVSHIAGAINLGERPLTRKLPRAKFMLFKYDD-EYGNPEGRS 220 (488) T ss_pred cCCeeeeeeeeecCcccccceeeccCCCceeecccccccccccccccccccccccccccccceEEEeecC-CCCccchhh Confidence 22 2556777666432 22222222111110 01123455555 4455333 345678999 Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCC---CCCCHHHHHHHHHHHHH----hhccccccccccccCCC-- Q lcl|Aclame:pro 177 EYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTD---AVQDRNDIEMLRENMVK----SKGRNNFKNLFLYAPQG-- 247 (344) Q Consensus 177 p~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~---~~l~~e~~~~lk~~~~~----~~g~~n~~~~~vl~~~~-- 247 (344) .+..+......-....++...|...-+.|--+.+.+- ..-++++.+.+.+...+ ..++..++ +++..+. T Consensus 221 Llr~~~w~~~fK~~~~~~w~~f~Er~g~g~p~~~~p~~~~~~~~~~e~~~l~~a~~~i~~~~~~~~~ag--~iiP~g~~~ 298 (488) T protein:vir:95 221 PLLNAYVPWKYKVQIEEYEAVGVSRDLVGMPKIGLPPDYLDENAEPEKKAFVQYCKTVVNDMIANDRAG--LIWPRYIDP 298 (488) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEeeccCCCCCcccHHHHHHHHHHHHHHHHhhccchhh--eeecccccc Confidence 9999999999888999999998886443333333321 11233444444443322 22222222 2332211 Q ss_pred --ccccceeeecccch-hHHHHHHHHhhhHHHHHHHhcCCHHHhccc--c--ccccccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 248 --KADGIKIIPLSEVA-TKDDFFNIKKASAADLLDAHRIPFQLMGGK--P--ENVGSLGDIEKVAKVFVRNELIPLQDRI 320 (344) Q Consensus 248 --~~~gl~~~pl~~~~-~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~--~--~~~~~~~n~e~~~~~f~~~~l~P~~~~i 320 (344) +...++++-++... .-..|.+.-.+--++|+++. +|.+ . +++++++- .+....-....+.-.++.+ T Consensus 299 ~~k~~~~e~~l~~~~~~~~~~~~~li~~~d~~Isk~i------LGqtLT~~~~~~Gs~Al-~~vh~ev~~~i~~aDa~~i 371 (488) T protein:vir:95 299 DTKEDIFEFSLVSRQGAKAYDTGSIIDRYSKQIMMAF------MSDVLAMGQSKYGSFSL-ADSKTSLLAMSVDILLKQI 371 (488) T ss_pred ccchhhhhhhccccccCCchhHHHHHHHHHHHHHHHH------hccccccccCcchhhhH-HHHHHHHHHHHHHHHHHHH Confidence 11112233333221 12235555556666777754 5542 1 11233332 2223333445556666666 Q ss_pred H-HHHHhhCCcceeccc------cccCCCC--C Q lcl|Aclame:pro 321 R-EINGWLGQEVIRFKN------YSLDTDN--G 344 (344) Q Consensus 321 e-eln~~L~~~~~~f~~------y~l~~~~--~ 344 (344) + .||+.|....+.+|. ..|.|+. - T Consensus 372 ~~tln~~li~~l~~~Nfg~~~~~P~~~~~~~e~ 404 (488) T protein:vir:95 372 KNVINRDLVAQTYALNMWDDEEHVQITYDDIET 404 (488) T ss_pred HHHHHHHHHHHHHHhcCCCCCCccEEEecCcCh Confidence 6 477765433332221 1222222 1 No 139 >protein:vir:80680 Length: 441 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285579;genbank:gi:148727085;genbank:GeneID:5247051 Probab=96.20 E-value=0.00088 Score=37.32 Aligned_cols=288 Identities=13% Similarity=0.088 Sum_probs=108.5 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) .-|.+-+..... .....+ +-..+...+. -+|... .+.. -|..+ +. +... -+.. T Consensus 31 ~G~~~i~~~~~~---~~~~~~--------~~k~~~n~~~--~ivd~~-~~~l--~~~g~-------~~-~d~~-~l~~-- 83 (441) T protein:vir:80 31 EGSNRVRDLGVA---IPPELQ--------RVQTVVSWPG--IAVDAL-EERL--DWLGW-------TN-GDGY-GLDG-- 83 (441) T ss_pred hcCCcchhcCcc---cchhhh--------hhhhhcchHH--HHHHHH-Hhhh--ccccc-------cC-CChH-HHHH-- Confidence 111111000000 000000 0000100000 011100 0000 00000 00 0000 0000 Q ss_pred hhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---e-----EEEEcCCce- Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---V-----YWWVPSFNE- 151 (344) Q Consensus 81 ~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---~-----~y~~~~~~~- 151 (344) ...-|.+ ......+..+.+.+|.+|+.+.++.+|.+ .+..++|..+.+..+.. . +|....++. T Consensus 84 -----i~~~n~~--~~~~~~~~~~~~~~G~a~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~~~~~~~~~~~~ 155 (441) T protein:vir:80 84 -----VYAANRL--ATASCDVHLDALIFGLSFVAIIPHGDGTV-SVRPQSPKNCTGKFSADGSRLDAGLVVQQTCDPEVV 155 (441) T ss_pred -----HHHhcCH--HHHHHHHHHHHhhcCeeEEEEEeCCCCce-EEEEEccceEEEEEeCCCCceeEEEEEEEEecCceE Confidence 0001111 22234566788999999999999998877 57777887665432211 0 011000000 Q ss_pred -EEEEecc--------------------------cEEEecCCCCCCCccccccchh----hHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 152 -PTAFAPG--------------------------SVFHLLEPDINQELYGLPEYLS----ALNSAWLNESATLFRRKYYE 200 (344) Q Consensus 152 -~~~~~~~--------------------------eViH~r~~~~~~~~~G~sp~~~----~~~~i~~~~aa~~~~~~~f~ 200 (344) ...+.++ -|+||++..-....+|.|.+.. +.+.+.....-......+| T Consensus 156 ~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~l~~~v~~liDa~~~~~s~~~~~~~~~- 234 (441) T protein:vir:80 156 EAELLLPDVIVQVERRGSREWVEVDRIPNVLGAVPLVPIVNRRRTSRIDGRSEITRSIRAYTDEAVRTLLGQSVNRDFY- 234 (441) T ss_pred EEEEEecCeEEEEEEcCCcceeeccccccCCCceeEEEeeccccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHhh- Confidence 0011111 2566654433345577776542 3333333333222233333 Q ss_pred hcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHH-HHHHHhhhHHHHHH Q lcl|Aclame:pro 201 NGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDD-FFNIKKASAADLLD 279 (344) Q Consensus 201 ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q-~~e~~~~~~~~Ia~ 279 (344) +.|--++ +|..++++..+. |+. ..++++.+.++.+.+++++..+.. .+++ |++..+.....|+. T Consensus 235 --~~~~~~i--~G~~~~~~~~~~----~~~-----~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~i~~~~~ 299 (441) T protein:vir:80 235 --AYPQRWV--TGVSADEFSQPG----WVL-----SMASVWAVDKDDDGDTPNVGSFPV--NSPTPYSDQMRLLAQLTAG 299 (441) T ss_pred --cCceeee--ecCCccccccch----hhh-----cccccccCCCCCCCCcceeEecCc--cchHHHHHHHHHHHHHHhc Confidence 3443333 454444432221 211 223444444444444555554443 2333 78888888999999 Q ss_pred HhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHH--------HH----HHhhCCcc-eecccc--ccCCCCC Q lcl|Aclame:pro 280 AHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIR--------EI----NGWLGQEV-IRFKNY--SLDTDNG 344 (344) Q Consensus 280 ~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie--------el----n~~L~~~~-~~f~~y--~l~~~~~ 344 (344) .-++|+..+|....+.+++ +.+. +....|.=.+.+.+ ++ ...++... .....+ ++.|.+. T Consensus 300 ~~~~p~~~~g~~~~~~~Sg---~Al~--~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~~i~~~f~~~ 374 (441) T protein:vir:80 300 EAAVPERYFGFITSNPPSG---EALA--AEESRLVKRAERRQTSFGQGWLSVGFLAAKALDSRVDEADFFGDVGLRWRDA 374 (441) T ss_pred ccCCCHHHhccCCCcchHH---HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccceeeeEEeCCC Confidence 9999999998753322222 1111 11111211111111 11 11112111 000111 2223333 No 140 >protein:vir:5839 Length: 533 # NCBI annotation: similar to portal vertex protein of head # Family: family:all:1036 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835625;genbank:gi:30044028 Probab=95.94 E-value=0.0012 Score=36.54 Aligned_cols=323 Identities=15% Similarity=0.123 Sum_probs=137.9 Q ss_pred CCC------CCCCCCC-Cchhhcccc---ccceEEEEcCCc------------cccccchhHHHHhhhhhcCcc----ee Q lcl|Aclame:pro 1 MSK------KKGKTLQ-PAAKKMTAS---APKMEAFTFGEP------------VPVLDRRDILDYVECISNGRW----YE 54 (344) Q Consensus 1 msk------~~~~~~~-~~~~~~~~~---~~~~~~~~~~~p------------~~~~~~~~v~~~~~~~~~~~~----~~ 54 (344) ||| ++..--+ +.+.....+ +.....| +++- +.++.++.|-..|.-|-++.+ .. T Consensus 20 ~~~~~~~~~p~~~dG~s~i~~~~~~~~~~~~~~~~~-~gg~~~n~~eLI~~YR~ma~~~pEVd~AideIvneaiv~d~~~ 98 (533) T protein:vir:58 20 LSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRF-YGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENG 98 (533) T ss_pred hchhhcccCccCCCCCccccCCCCcchhhhhhhhhh-hccccccHHHHHHHHHHhhccCcchhhHHHhhhceeeEecCCC Confidence 332 2221111 011000000 0000011 1110 111122233333322222211 12 Q ss_pred ccccHHHHHHHhhcchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEEC-CCCceEEEEEecCcc Q lcl|Aclame:pro 55 PPISFTGLAKSLRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYS-TTGKVIRLETSPAKY 133 (344) Q Consensus 55 ~p~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~-~~G~~~~L~pl~~~~ 133 (344) .||.+. |. +...+..|..+-. .++++. ..-...+..|.+.|..|..++-+ ..+.+.+|..|+|.. T Consensus 99 ~pV~v~-l~-----~~e~s~~iK~kI~-~lldf~-------~~~~~~fR~WYVDGriy~Hkiik~~k~GI~elr~lDPr~ 164 (533) T protein:vir:58 99 NIVDVV-TK-----DIELAKAILSYLD-YVINIE-------KNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYI 164 (533) T ss_pred ceeEee-cc-----cccccHHHHHHHH-HHhcch-------hhhhHHHHhhhhcceeEEEeccCCcccchhhheecCCee Confidence 222221 00 0001111111111 111110 01123456788899999988643 456688999999999 Q ss_pred eeccccC---ceEEEEc-------CCceEEEEecccEEEecCC-CCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 134 TRRGVEE---DVYWWVP-------SFNEPTAFAPGSVFHLLEP-DINQELYGLPEYLSALNSAWLNESATLFRRKYYENG 202 (344) Q Consensus 134 v~~~~~~---~~~y~~~-------~~~~~~~~~~~eViH~r~~-~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng 202 (344) ++..... ..||.+. .......++.+.|+|+..- ...++-+++|-|..|...+....-.+...--|=-.- T Consensus 165 i~~vr~~~t~~eyyvy~~~~~~~~s~~~~~kI~~daI~y~~SGl~d~~~~~iisyLhkAiKp~NQLkmiEDAlVIYRisR 244 (533) T protein:vir:58 165 FSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVR 244 (533) T ss_pred eEEEEeeccceEEEeecccccccccCccccccchhheeeeeeccccCCCCceehhhhHHHHHHHHHHHHHHHHHHHhhcC Confidence 8765433 3455443 2233467788999998732 233566788888888665555444444433332233 Q ss_pred CCCceEEEeC-CCCCCHHHHHHHHHHHHHhhc----ccccccc------c----ccc-------CCCccccceeeecccc Q lcl|Aclame:pro 203 AHAGYIMYVT-DAVQDRNDIEMLRENMVKSKG----RNNFKNL------F----LYA-------PQGKADGIKIIPLSEV 260 (344) Q Consensus 203 ~~p~gil~~~-~~~l~~e~~~~lk~~~~~~~g----~~n~~~~------~----vl~-------~~~~~~gl~~~pl~~~ 260 (344) +.=.=|+++. +......+.+-+++-+.+++. ..+.|.+ + +|+ .|+ .|.+++.|.- T Consensus 245 APeRRvFYIDVGNlpk~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~m~~~sMlEDyWLpRReGg--rgTEI~TLpG- 321 (533) T protein:vir:58 245 SVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDR--RAVEIDILQG- 321 (533) T ss_pred ChhheEEEEeecCCCccCHHHHHHHHHHhcccceEEeccCCeEeeccchhhhhhhHhhhcccccCCC--ccceeeecCC- Confidence 3222344332 222223344444444444322 0111111 1 111 111 2334444332 Q ss_pred hhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCC-cceeccc-- Q lcl|Aclame:pro 261 ATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWLGQ-EVIRFKN-- 336 (344) Q Consensus 261 ~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~iee-ln~~L~~-~~~~f~~-- 336 (344) . .+.-++--.+-...+-++.+||.+.++...+ .+-.+.|.....-|.+. |.-+..++.+ |.+.|-. .++.-.+ T Consensus 322 g-~lgemeDV~YF~kkLy~ALnVP~sRl~~e~~-fgr~~eItRDEiKF~KF-I~rLR~rF~~ll~~qLilk~iit~eew~ 398 (533) T protein:vir:58 322 S-KVDLAEDVEYMLNRLISALKVPKAFIGYEGD-VNAKNTLATQDIKFNNT-IKRIQGFFVEELERMVRMNKEFADQDFR 398 (533) T ss_pred C-CCCcHHHHHHHHHHHHHHhCCCeeecCCCCC-CccchhhhHHHHHHHHH-HHHHHHHHHHHHhcccccccCcchhhee Confidence 1 1333344445667899999999999986432 22223344444445443 5556666664 4445422 1122122 Q ss_pred cccCCCCC Q lcl|Aclame:pro 337 YSLDTDNG 344 (344) Q Consensus 337 y~l~~~~~ 344 (344) |++..|+- T Consensus 399 ~~f~~Dn~ 406 (533) T protein:vir:58 399 LVMNRSNS 406 (533) T ss_pred eeeeccch Confidence 33333433 No 141 >protein:vir:99916 Length: 504 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655520;genbank:gi:109392290;genbank:GeneID:4157085 Probab=94.84 E-value=0.0034 Score=34.14 Aligned_cols=308 Identities=11% Similarity=0.027 Sum_probs=108.5 Q ss_pred ccccccceEEEEc-----CCccccccchhHH----------HHhhhhhcCcc--eeccccH-HHHHHHhhcchhhhhhhh Q lcl|Aclame:pro 16 MTASAPKMEAFTF-----GEPVPVLDRRDIL----------DYVECISNGRW--YEPPISF-TGLAKSLRAAVHHSSPIY 77 (344) Q Consensus 16 ~~~~~~~~~~~~~-----~~p~~~~~~~~v~----------~~~~~~~~~~~--~~~p~~~-~~l~~~~~~~~~~~~~i~ 77 (344) .|.-..+.++|++ .+++.-+ ...+. ..+.-...+.- -..+..+ ..+.+..-...+-..++. T Consensus 1 ~~~~~~~~~~~~~~~~~l~~~e~~~-i~~L~~~~~~~~~r~~~l~~YY~G~~~i~~~~~~~p~~~~~~~~v~n~~~~iVd 79 (504) T protein:vir:99 1 MTEETTSASKFTFRIPELNDDVVDK-VNGLYQQLVDRTPRNLLRASFYDGKYAIRQIGNLIPPEYLRTATVLGWSAKAVD 79 (504) T ss_pred CCccCCcccccccccCCCCHHHHHH-HHHHHHHHHHHhHHHHHHHHHHhccccchhccccccHHHHHHhhccCcHHHHHH Confidence 1222222222222 2222111 00011 11111111110 0011111 011111001111111111 Q ss_pred hhhhhHHHh--cccCCCCCHHH-------------HHHHHHHHHhcCCeEEEEEECCCCceE-EEEEecCcceeccccCc Q lcl|Aclame:pro 78 VKRNILAST--FIPHPWLSQQD-------------FSRFVLDFLVFGNAFLEKRYSTTGKVI-RLETSPAKYTRRGVEED 141 (344) Q Consensus 78 ~~~~~~~~~--~~pn~~~~~~~-------------f~~~~~~~ll~Gnay~~i~r~~~G~~~-~L~pl~~~~v~~~~~~~ 141 (344) .-...+... ..+..-..... ...+..+.+.+|.+|+.+.++.+|++. .+.+++|..+....+.. T Consensus 80 ~~a~rl~~~Gf~~~d~~~~~~~l~~i~~~N~ld~~~~~~~~~a~iyG~af~~v~~~~d~~~~~~I~~~sP~~~~~iyD~~ 159 (504) T protein:vir:99 80 TLARRCNLESFVWPDGDYGSIGGPDVWDENFFATKANNAMVSSLIHGPAFLINTEGGAGEPDSLIHVKSAMQATGEWNSR 159 (504) T ss_pred HHHhhhccceeeCCCCChhhHHHHHHHHhcChhhHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEeccceeEEEEeCC Confidence 110000000 11111111111 123445788999999999999888864 57788887665332221 Q ss_pred e--------EEEEcCCceEE---EEeccc------------------------EEEecCCCCCCCccccccch----hhH Q lcl|Aclame:pro 142 V--------YWWVPSFNEPT---AFAPGS------------------------VFHLLEPDINQELYGLPEYL----SAL 182 (344) Q Consensus 142 ~--------~y~~~~~~~~~---~~~~~e------------------------ViH~r~~~~~~~~~G~sp~~----~~~ 182 (344) . ++....+|... .+.++. |++|.+..-.+..+|.|.+. .+. T Consensus 160 ~~~~~~a~~~~~~d~~g~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~gvPvV~~~n~~~~~~~~G~sei~~~v~~l~ 239 (504) T protein:vir:99 160 RNAMDSLLSITSRDAEGHPTGIALYEDGVTVTADMDDDGDWHADVRTHKLGVPVEVLPYKPREDRPLGSSRITRPVMSLQ 239 (504) T ss_pred CCceeEEEEEEEecCCCeEEEEEEEcCCcEEEEEEcCCceeeeccccCCCCcceEEecccccCccccCcccchhhHHHHH Confidence 0 11111222111 122222 44554332224456776543 222 Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCH---HHHHHHHHHHHHhhccccccccccccCCCc-----ccccee Q lcl|Aclame:pro 183 NSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDR---NDIEMLRENMVKSKGRNNFKNLFLYAPQGK-----ADGIKI 254 (344) Q Consensus 183 ~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~---e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~-----~~gl~~ 254 (344) .++.-...-..-...||.+ |--++ .|..+++ ++. .-...|+... ++++.+..+.+ ..+.++ T Consensus 240 Da~~~~~~~~~~~~e~~a~---p~r~i--~G~~~~~~~~~d~-~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~ 308 (504) T protein:vir:99 240 QRALKGCIRMDGHADVYSF---PQLIL--LGADAKNFRNKDG-SMKPAWQIAL-----ARVFALPDDEDEPDAARARADV 308 (504) T ss_pred HHHHHHHHHHHHHHHHhcc---hhhhh--ccCCccccccccc-cccchhhhhh-----hhhhcCCCccccccccCcccee Confidence 2222222222223334333 22222 2221111 110 0112222211 12222221110 112344 Q ss_pred eecccchhHHH-HHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---- Q lcl|Aclame:pro 255 IPLSEVATKDD-FFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIREINGWLGQ---- 329 (344) Q Consensus 255 ~pl~~~~~d~q-~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ieeln~~L~~---- 329 (344) ..+.. .+++ |++..+..+..|+++=++|++.+|+....+ .++.+.+ +..+.++..+.+..+++++. T Consensus 309 ~q~~~--~~l~~~~~~l~~~i~~~a~~t~~P~~~lG~~~~~n--~sSa~Ai-----~~~~~~L~~ka~~k~~~f~~~l~~ 379 (504) T protein:vir:99 309 KQFPA--SSPQPHIEMLEQIAMMFSGETSIPVESLGFSNRAN--PTSADAY-----IASREDLIAEAEGATDDWSPAFRR 379 (504) T ss_pred eecCC--CChHHHHHHHHHHHHHHHhhhCCCHHHhccccccc--ccHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH Confidence 44332 3344 899999999999999999999999764311 1222222 12233333333222222111 Q ss_pred ------------cceeccccc--cCCCCC Q lcl|Aclame:pro 330 ------------EVIRFKNYS--LDTDNG 344 (344) Q Consensus 330 ------------~~~~f~~y~--l~~~~~ 344 (344) .......+. +.+.+. T Consensus 380 ~~rla~~~~~~~~~~~~~~~~~~v~w~d~ 408 (504) T protein:vir:99 380 SMIRALAIKNGLDRIPPEWKTIDSKFRSP 408 (504) T ss_pred HHHHHHHHhcCCCccccccccceeEecCC Confidence 001111111 112233 No 142 >protein:vir:4073 Length: 279 # NCBI annotation: minor structural protein # Family: family:all:11744 # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043552;genbank:gi:9628686;genbank:GeneID:1261159 Probab=94.24 E-value=0.0017 Score=35.74 Aligned_cols=257 Identities=13% Similarity=0.102 Sum_probs=107.7 Q ss_pred eEEEEcCCccccccchhHHHHhhhhh--cCcceeccccHHHHHHHhhcchhhhhhhhhhhhhHHHhcccCCCCCHHHHHH Q lcl|Aclame:pro 23 MEAFTFGEPVPVLDRRDILDYVECIS--NGRWYEPPISFTGLAKSLRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSR 100 (344) Q Consensus 23 ~~~~~~~~p~~~~~~~~v~~~~~~~~--~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~ 100 (344) ++.|.++- -.+-.+ .-++..|..++ -+.++... ..-+-+-.+.....++. T Consensus 1 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------------~~~~~~~~~~~~~~~~~ 52 (279) T protein:vir:40 1 MSLFNLSR------------RAEDVSFSTFTVQDPTTDL-LLGKLLGL---------------VSYFDNVDYSEASKLED 52 (279) T ss_pred Ccccccch------------hhcccceeeeeecCcchhH-HHHHHHHH---------------HHHhhcccchhhhhhhh Confidence 22221110 000000 00111111111 11111110 00011111111111111 Q ss_pred HHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCceEEE--EcCCceEEEEecccEEEecCCCCCCCccccccc Q lcl|Aclame:pro 101 FVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWW--VPSFNEPTAFAPGSVFHLLEPDINQELYGLPEY 178 (344) Q Consensus 101 ~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~y~--~~~~~~~~~~~~~eViH~r~~~~~~~~~G~sp~ 178 (344) ++-|.+.|.-...+...+. .+.--..+.+.|-. ..+..+.++++-.||--+ .++.+|+-+= T Consensus 53 -~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~d~fn~~vr~~~~~~vtVP~~Dv~Ii-----eNPlv~v~~e 115 (279) T protein:vir:40 53 -LFYWALQGKEVYRVWYGGF-----------KYYAQRVNADQFNIVVREPNRREVTIRTNDYEML-----LNPFYGANPQ 115 (279) T ss_pred -hhhhhhccceeehhhhhhH-----------HHHHhhcCcchhhhheecCCcceeEeecchhhhh-----hcchheeccc Confidence 1122233322111111110 00000000111100 112233345555555333 2345666543 Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHh-hccccccccccccCCCccccceeeec Q lcl|Aclame:pro 179 LSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKS-KGRNNFKNLFLYAPQGKADGIKIIPL 257 (344) Q Consensus 179 ~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~-~g~~n~~~~~vl~~~~~~~gl~~~pl 257 (344) ..-.-++++ .+--..++ .+-+...++++.+-..-.++.+++.+..+++. .+..+.+.+..++. |-+++.| T Consensus 116 -e~~kM~~la--~nai~~KL-D~~~qIk~fIKTd~d~glee~kekaR~rIk~mlalAk~~nGityid~-----~ddItQL 186 (279) T protein:vir:40 116 -RFGVMFGMA--SNGIGRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGS-----DDDIKQI 186 (279) T ss_pred -hhhHHHHHH--Hhhhhhhh-cccceeeeEEecCcchhHHHHHHHHHHHHHHHHHHHHhcCCeeeecC-----CceeEee Confidence 222223333 22223444 77778888998653334578888888888654 45566678888865 4456666 Q ss_pred ccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHH-H------HHHhhCCc Q lcl|Aclame:pro 258 SEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIR-E------INGWLGQE 330 (344) Q Consensus 258 ~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie-e------ln~~L~~~ 330 (344) .-+-.-+ ..+--.+.+++.+..+|||..++- +++ .|.+.+.|+..++.|+++..| + +|.+..+. T Consensus 187 ~kDYSts-lk~die~lkS~l~Sq~GinekIL~----GsA----tE~q~iAyy~rtVePILkQyek~liY~~E~fv~y~tt 257 (279) T protein:vir:40 187 QPDYSGS-LQNDANLAIEIALSEYGMPRELLY----GQS----NEVTIIAFAIQKVLPLLKQHDKNIIFNQENFVAYIST 257 (279) T ss_pred ccccccc-cHHHHHHHHHHHHhhcCCchhhcc----ccC----chhhhhhHHHhhHHHHHHHhcccccchhhhhhhhhee Confidence 5432211 222234566788999999988873 222 288999999999999998875 2 33332221 Q ss_pred ceeccccccCCCCC Q lcl|Aclame:pro 331 VIRFKNYSLDTDNG 344 (344) Q Consensus 331 ~~~f~~y~l~~~~~ 344 (344) -.| +-.|+-... T Consensus 258 ta~--gg~~~s~~~ 269 (279) T protein:vir:40 258 TAK--GGAIESKSS 269 (279) T ss_pred ccc--Ccccccccc Confidence 000 000110000 No 143 >protein:vir:105782 Length: 449 # NCBI annotation: gp5 # Family: family:all:6783 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224143;genbank:gi:62362218;genbank:GeneID:3342535 Probab=94.23 E-value=0.005 Score=33.19 Aligned_cols=303 Identities=13% Similarity=0.051 Sum_probs=115.5 Q ss_pred CCCCCCCCCCCchhhcc------------cc--ccceEEE-EcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHH Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMT------------AS--APKMEAF-TFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKS 65 (344) Q Consensus 1 msk~~~~~~~~~~~~~~------------~~--~~~~~~~-~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~ 65 (344) ||||...-......... .+ .....++ .|+-|.. + ....+... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~rd~l~~~~~glg~~r~~~~~~~g~~~~-~----------------------~~~~l~~~ 57 (449) T protein:vir:10 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPEL-V----------------------TYENLYSL 57 (449) T ss_pred CchhhHHHHhhhcchhHHHHHHHHHHHHHhcCCcccchhhhhcCCccc-C----------------------CHHHHHHH Confidence 99985541111111000 00 0000011 1222221 1 11122222 Q ss_pred hhcchhhhhhhhhhhhhH------H--HhcccCCC-CCH----------HHHHHHHHH----HHhcCCeEEEEE-ECC-- Q lcl|Aclame:pro 66 LRAAVHHSSPIYVKRNIL------A--STFIPHPW-LSQ----------QDFSRFVLD----FLVFGNAFLEKR-YST-- 119 (344) Q Consensus 66 ~~~~~~~~~~i~~~~~~~------~--~~~~pn~~-~~~----------~~f~~~~~~----~ll~Gnay~~i~-r~~-- 119 (344) +|.+..-..++....... . ........ .+. ..+|..+.+ -.++|-+.+++. +++ T Consensus 58 Yr~~~ia~~iVd~~~d~~~~~~~~i~~g~~~~~~~~~~~~e~~~~~l~~~~~~~~l~ea~~~~rl~Gga~i~i~v~d~~~ 137 (449) T protein:vir:10 58 YRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKD 137 (449) T ss_pred HhcCchhHHHHHhhhhhhhhcCcccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcEEEEEEecCCCC Confidence 222211111111000000 0 00000000 000 012222222 236787877764 333 Q ss_pred -------CCceEEEEEecCcceeccc---c-------CceEEEEcC-----CceEEEEecccEEEecCCCCCCCcccccc Q lcl|Aclame:pro 120 -------TGKVIRLETSPAKYTRRGV---E-------EDVYWWVPS-----FNEPTAFAPGSVFHLLEPDINQELYGLPE 177 (344) Q Consensus 120 -------~G~~~~L~pl~~~~v~~~~---~-------~~~~y~~~~-----~~~~~~~~~~eViH~r~~~~~~~~~G~sp 177 (344) .+.+..|.|+....+.+.. + ...+|++.. .+..+.+.++-|+||... +..|.|- T Consensus 138 l~~Pl~~~~~i~~i~v~~~~~i~~~~~~~dp~sp~yg~P~~y~v~~~~~g~~~~~~~iH~SRl~~~~~~----~~~g~~~ 213 (449) T protein:vir:10 138 WNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGF 213 (449) T ss_pred CCcccccCcceeeEEeeccccCChhhhhcCCCCCCCCCceEEEEeeeccCCCccceeeccceeEeecCC----CCCChhH Confidence 2456777777665444321 1 112565542 123456888889988543 2337787 Q ss_pred chhhHHHHHH-HHHHHHHHHHHHHhcCC-----------CceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccC Q lcl|Aclame:pro 178 YLSALNSAWL-NESATLFRRKYYENGAH-----------AGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAP 245 (344) Q Consensus 178 ~~~~~~~i~~-~~aa~~~~~~~f~ng~~-----------p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~ 245 (344) ++.+.+.+.. ...+.-+...+++|-.+ ..++....+. ..++..+++.+..+....+.+ ..++ .. T Consensus 214 L~~~yn~l~~~~~~~~~~a~~~l~~~~rq~~~~~~~~~~~~~l~~~~~~-~~e~~~~~~~~~~~~~~~~~~--~~~i-~~ 289 (449) T protein:vir:10 214 LEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGV-SIDELQDKFNEVAGEINRGND--VLMT-TQ 289 (449) T ss_pred HHHHHHHhhhHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhHHhhC-CchHHHHHHHHHHHHHhccch--heee-cC Confidence 8877664422 22222233333333221 1111111111 123334445555544322221 2233 22 Q ss_pred CCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHH------HHHHHHHHH Q lcl|Aclame:pro 246 QGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVR------NELIPLQDR 319 (344) Q Consensus 246 ~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~------~~l~P~~~~ 319 (344) +-+++.++.+..+. -+.-....++||++-+||...|=.... ++.+.-+ ..+.||. .-|.|.+++ T Consensus 290 -----~~d~~~~~~~~sgl--~d~l~~~~q~iaaa~~IP~t~L~Gqsp--~glnst~-D~~nyyd~i~~~Q~~l~p~le~ 359 (449) T protein:vir:10 290 -----GATVTPLVTSVADP--TATYNVNLQTAAAGVDIPTRILIGNQQ--AERSSTE-DQKYFNARCQSRRVDLSFEIED 359 (449) T ss_pred -----CcceEEEecccCCh--hHHHHHHHHHHHHHhCCCeeeeeccCc--cccccch-hHHHHHHHHHHHHHhhhHHHHH Confidence 22355555544433 233445667799999999987643322 2222222 3334433 234454444 Q ss_pred HHH-HHH-hhCC--cceeccccccCCCCC Q lcl|Aclame:pro 320 IRE-ING-WLGQ--EVIRFKNYSLDTDNG 344 (344) Q Consensus 320 iee-ln~-~L~~--~~~~f~~y~l~~~~~ 344 (344) +-+ |-+ .++. ..|.|....|..=.. T Consensus 360 l~~~l~~s~~g~~~~d~~i~f~pL~~~t~ 388 (449) T protein:vir:10 360 FCDKLIELKIIDAVAKKAVIWDDLNEQTG 388 (449) T ss_pred HHHHHHHhhcCCCCCceeEEeCCCCCCCH Confidence 332 111 1222 223333333332222 No 144 >protein:vir:7768 Length: 484 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817602;genbank:gi:29566032;genbank:GeneID:1259226 Probab=93.43 E-value=0.0076 Score=32.20 Aligned_cols=304 Identities=12% Similarity=0.051 Sum_probs=107.3 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHH----------hhhhhcCc--ceeccccH-HHHHHHhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDY----------VECISNGR--WYEPPISF-TGLAKSLR 67 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~----------~~~~~~~~--~~~~p~~~-~~l~~~~~ 67 (344) ||---+.- +-.+|+.... .+..+ +.-...|. +-..+... ..+..+.. T Consensus 1 ~~~~~~~~------------------~~~~~~~~~~--~l~~~~~~~~~rl~~l~~Yy~G~~~i~~~~~~~~~~~~~~~~ 60 (484) T protein:vir:77 1 MTSPLQKQ------------------ENVDPEKARE--EMLNLFTERTQDLGDNTAYYESERRPDAVGVTVPQQMQKLLA 60 (484) T ss_pred CCCccccc------------------CCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHhccccchhcccccchhHHhhhh Confidence 22111110 1112221100 01111 11111111 00011110 11111111 Q ss_pred cchhhhhhhhhhhhhHHHh-cc-cCCCCCHHH-------------HHHHHHHHHhcCCeEEEEEECCCCce-------EE Q lcl|Aclame:pro 68 AAVHHSSPIYVKRNILAST-FI-PHPWLSQQD-------------FSRFVLDFLVFGNAFLEKRYSTTGKV-------IR 125 (344) Q Consensus 68 ~~~~~~~~i~~~~~~~~~~-~~-pn~~~~~~~-------------f~~~~~~~ll~Gnay~~i~r~~~G~~-------~~ 125 (344) ...+...++......+... +. +..-..... ...+..+.+.+|.||+.+.++..|.+ .. T Consensus 61 ~~n~~~~ivd~~~~~l~~~g~~~~~~~~~~~~l~~i~~~N~~d~~~~~~~~~a~~~G~a~~~v~~~~~~~~~~~~~~~~~ 140 (484) T protein:vir:77 61 HVGYPRLYIDAIAARQELEGFRLGGADKADEQLWDWWQANDLDIESTLGHTDSLVHGRSYITISKPDPNIDPGVDPEVPI 140 (484) T ss_pred hcCcHHHHHHHHHhhhccCceecCCcchhHHHHHHHHHhcCHhHHHHHHHHHHhhcCceEEEEecCCCCcccccccccce Confidence 1222222222211111111 01 111000111 12345677899999999999887754 24 Q ss_pred EEEecCcceeccccCc--------eEEEEcCCceE---EEEecc-------------------------cEEEecCCCCC Q lcl|Aclame:pro 126 LETSPAKYTRRGVEED--------VYWWVPSFNEP---TAFAPG-------------------------SVFHLLEPDIN 169 (344) Q Consensus 126 L~pl~~~~v~~~~~~~--------~~y~~~~~~~~---~~~~~~-------------------------eViH~r~~~~~ 169 (344) |.+++|..+....+.. .+|....++.. ..|.++ -|+||.+..-. T Consensus 141 i~~~~p~~~~~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~N~~~~ 220 (484) T protein:vir:77 141 IRVEPPTNLYAQIDPRTRQVMRAIRAIEDEEGNEVIGATLYLPNNTVIWNREDGQWVQVANVAHNLEMVPVIPIPNRTRL 220 (484) T ss_pred EEEeccceeEEEecCCCCceEEEEEEEEeecCCcEEEEEEEecCeEEEEEecCCceEeeccccCCCCCcceEEecccccc Confidence 6777776654332211 01111111110 011111 14666543323 Q ss_pred CCccccccchh----hHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHH--HHHHHHHhhccccccccccc Q lcl|Aclame:pro 170 QELYGLPEYLS----ALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEM--LRENMVKSKGRNNFKNLFLY 243 (344) Q Consensus 170 ~~~~G~sp~~~----~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~--lk~~~~~~~g~~n~~~~~vl 243 (344) .+..|.|.+.- +...+.....-..-...|| +.|--++. +...++...+. -...|+.. .+.++.+ T Consensus 221 ~~~~G~s~i~~~v~~L~Da~~~~~s~~~~~~~~~---a~p~~~i~--G~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 290 (484) T protein:vir:77 221 SDLYGTTEITPELRSVTDAAARTLMLMQATAELM---GVPQRLLF--GVKGEELGVDPETGQTLFDAY-----LARILAF 290 (484) T ss_pred CccCCcccchHHHHHHHHHHHHHHHHHHHHHHhh---hhhHHHHh--CCCcchhcccccccchhhhhh-----hhhhccc Confidence 44567776642 2333333222222233333 33433332 32222211111 11122221 1234444 Q ss_pred cCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHH---- Q lcl|Aclame:pro 244 APQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDR---- 319 (344) Q Consensus 244 ~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~---- 319 (344) .. ++.++..+....-+ -|++..+....+|+.+=++|++.+|....+.+++ +.+. +....|.=.++. T Consensus 291 ~~----~~~~~~q~~~~~~e-~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg---~Al~--~~~~~l~~ka~~k~~~ 360 (484) T protein:vir:77 291 ED----HESKAQQFSAAELR-NFVDALDALDRKAAAYTGLPPYYLSFSSENPASA---EAIR--SSESRLVKTVERKNKI 360 (484) T ss_pred CC----CCceeEeecCCChH-HHHHHHHHHHHHHhcccCCCHHHhccccCcchHH---HHHH--HHHHHHHHHHHHHHHH Confidence 31 24456555433322 2888888888889999999999998643322222 2211 111111111111 Q ss_pred ----HHHHHH----hhCCcceecccc--ccCCCCC Q lcl|Aclame:pro 320 ----IREING----WLGQEVIRFKNY--SLDTDNG 344 (344) Q Consensus 320 ----ieeln~----~L~~~~~~f~~y--~l~~~~~ 344 (344) ++++-+ ..+......+.+ ++.+.+. T Consensus 361 f~~~l~~~~~l~~~~~~~~~~~~~~~~i~v~w~~~ 395 (484) T protein:vir:77 361 FGGAWEQAMRVAYKVMNGGDIPPEYYRMESIWRDP 395 (484) T ss_pred HHHHHHHHHHHHHHHhCCCCcccccccceEEecCC Confidence 111111 111111111111 2223222 No 145 >protein:vir:106716 Length: 698 # NCBI annotation: gp18 # Family: family:all:297 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944326;genbank:gi:38638625;genbank:GeneID:2657345 Probab=93.23 E-value=0.0083 Score=31.99 Aligned_cols=321 Identities=13% Similarity=0.109 Sum_probs=129.9 Q ss_pred CCCCCCCCCCCchh----------hc--------cccc-cc-------------eEEEEcCCccccccchhHHHHhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAK----------KM--------TASA-PK-------------MEAFTFGEPVPVLDRRDILDYVECIS 48 (344) Q Consensus 1 msk~~~~~~~~~~~----------~~--------~~~~-~~-------------~~~~~~~~p~~~~~~~~v~~~~~~~~ 48 (344) ||.|..+++++-.. +. +.++ .+ ..+-....|.+.++....|. +++-. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (698) T protein:vir:10 1 MSRRNAKKRTQLAHTGRRPEVAKAAALAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFE-VDVSN 79 (698) T ss_pred CCccchhhhhhhhhcCCCcchhhhhhhhhhhhhhhhccccccchhhcccccccccccccccCCCccccccccce-ecccc Confidence 99876665543211 10 1110 00 00111223444444333332 22111 Q ss_pred cCcceecccc--------------HH---------HHHHHhhcchhhhhhhhhhhhhHHHhc--cc-------------- Q lcl|Aclame:pro 49 NGRWYEPPIS--------------FT---------GLAKSLRAAVHHSSPIYVKRNILASTF--IP-------------- 89 (344) Q Consensus 49 ~~~~~~~p~~--------------~~---------~l~~~~~~~~~~~~~i~~~~~~~~~~~--~p-------------- 89 (344) .+..-..+.+ ++ .|+.+... +.+.+....+... ++ T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~~la~laQ~------~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~ 153 (698) T protein:vir:10 80 YTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQL------PEYRAMHEVLADECIRTWGEAIGGTKEKADT 153 (698) T ss_pred CCccccchhhhhhcccccccccchhhhccCcchHHHHHHHhhc------cchhhHHHHHHHHhhcccceeccccchhhhh Confidence 1111111111 10 01111110 0011111111000 00 Q ss_pred -------C--CCCCH------------H----HHHHHHHHHHhcCCeEEEEEEC-----------------CCCceEEEE Q lcl|Aclame:pro 90 -------H--PWLSQ------------Q----DFSRFVLDFLVFGNAFLEKRYS-----------------TTGKVIRLE 127 (344) Q Consensus 90 -------n--~~~~~------------~----~f~~~~~~~ll~Gnay~~i~r~-----------------~~G~~~~L~ 127 (344) | ..... . .+...+..--++|-+-+++.-. +.|..++|. T Consensus 154 ~g~~~~~~~~~~~d~dqi~~L~~e~erl~V~~~l~eai~~aRlfGGa~~~i~I~gdd~~l~~PL~~~~~~I~kGslKGL~ 233 (698) T protein:vir:10 154 SGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLR 233 (698) T ss_pred hcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceEEEEEeecCccccccccccccccccCccceeee Confidence 0 00000 1 1122222223677776555322 235666788 Q ss_pred EecCcceeccccC-----------ceEEEEcCCceEEEEecccEEEecCCCC------CCCccccccchhhHHHHHHHHH Q lcl|Aclame:pro 128 TSPAKYTRRGVEE-----------DVYWWVPSFNEPTAFAPGSVFHLLEPDI------NQELYGLPEYLSALNSAWLNES 190 (344) Q Consensus 128 pl~~~~v~~~~~~-----------~~~y~~~~~~~~~~~~~~eViH~r~~~~------~~~~~G~sp~~~~~~~i~~~~a 190 (344) .+++++|.+.... ..||++.+ . .+.++-++.|..... ...+.|+|..+.+.+.+..... T Consensus 234 ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~G--~--~IH~SRL~~~vg~pvpd~LKp~y~f~G~Sv~q~~~e~V~~~~r 309 (698) T protein:vir:10 234 VVEPYWVTPNNYNSINPVADDFYKPSTWWMIG--S--EVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLR 309 (698) T ss_pred eecccccccchhhhccchhhccCCCceEEEec--c--eecceeEEEecCCCchhhhcchhccCCccHHHHHHHHHHHHHH Confidence 8999888764321 12455542 2 244444444443211 1234699999998888877666 Q ss_pred HHHHHHHHHHhcCCCceEEEeC-CCCCCHHHHHHHHH---HHHHhhccccccccccccCCCccccceeeecccchhHHHH Q lcl|Aclame:pro 191 ATLFRRKYYENGAHAGYIMYVT-DAVQDRNDIEMLRE---NMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDF 266 (344) Q Consensus 191 a~~~~~~~f~ng~~p~gil~~~-~~~l~~e~~~~lk~---~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~ 266 (344) +......+.+. .+.+++. +. ...++.+....+.. .++.++ +|.|- .+++. +.-+|...+.+... + T Consensus 310 T~~~v~~Li~~-~~~~~l~-~dla~aL~~g~~~~l~~R~eli~~~R--sn~G~-~llDk----~~Eefeq~st~lSG--L 378 (698) T protein:vir:10 310 TRQSVSDIVKQ-FSVSGIL-MDLAQALTPGANVDLSMRAELINRYR--DNRNI-LFLDK----ATEEFFQFNTPLSG--L 378 (698) T ss_pred HhhhHHHHHHH-hhHHHHH-HHHHHhcCChhhHHHHHHHHHHHHhc--Cccce-EEEec----CCcceEEEecCcCC--H Confidence 66665555543 2223321 10 01122222222333 234444 34444 44542 12345554433322 2 Q ss_pred HHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHH-------HHHHHHHHHHH-HHHh-hCC--cceecc Q lcl|Aclame:pro 267 FNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRN-------ELIPLQDRIRE-INGW-LGQ--EVIRFK 335 (344) Q Consensus 267 ~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~-------~l~P~~~~iee-ln~~-L~~--~~~~f~ 335 (344) -+......+.||.+-+||..+|=..+..+- .++-|...+.||.. .|.|.++++-+ |-+- ||. ..|.|. T Consensus 379 ddVi~qf~q~VAgaa~IPltkLfGqSPkGl-NATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~idp~i~~~ 457 (698) T protein:vir:10 379 DALQAQAQEQMSAVSHIPLIKLLGITPTGL-NASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQ 457 (698) T ss_pred HHHHHHHHHHHHhhhcCchhhhhccCCccc-CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEE Confidence 233334557799999999988643332211 13445555666543 56777666543 2222 232 112221 Q ss_pred ccc-cCCCCC Q lcl|Aclame:pro 336 NYS-LDTDNG 344 (344) Q Consensus 336 ~y~-l~~~~~ 344 (344) ..- -+.+|- T Consensus 458 fnPL~qmtd~ 467 (698) T protein:vir:10 458 WNALRELDDL 467 (698) T ss_pred eCCCCCcCHH Confidence 111 122222 No 146 >protein:vir:98444 Length: 434 # NCBI annotation: hypothetical protein # Family: family:all:5096 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958276;genbank:gi:41057250;genbank:GeneID:2732828 Probab=92.49 E-value=0.011 Score=31.28 Aligned_cols=274 Identities=8% Similarity=-0.083 Sum_probs=105.7 Q ss_pred eeccccHHHHHHHhh--cchhhhhhhhhhhhhH---------------HH-hcccCCCCCHHHHHHHHHHHHhcCCeEEE Q lcl|Aclame:pro 53 YEPPISFTGLAKSLR--AAVHHSSPIYVKRNIL---------------AS-TFIPHPWLSQQDFSRFVLDFLVFGNAFLE 114 (344) Q Consensus 53 ~~~p~~~~~l~~~~~--~~~~~~~~i~~~~~~~---------------~~-~~~pn~~~~~~~f~~~~~~~ll~Gnay~~ 114 (344) +.+|-.........+ ...+...++......+ +. ...-|.+. .....+..+.+.+|.+|+. T Consensus 1 ~l~~~~~~~~~~~~~~~v~n~~~~ivd~~~~~l~~~gf~~~d~~~~~~~~~i~~~N~~d--~~~~~~~~~a~i~G~ay~~ 78 (434) T protein:vir:98 1 MLPKNAEQAFLDFQRKARTNFCGLIANASVHRLLALGVTGPDGEPDTRASRWWQANRLD--SRQKLVWRMAMAQSAGYML 78 (434) T ss_pred CCCCCccHHHHHhhhhhhccchHHHHHHHHhhhccCceecCCCchHHHHHHHHHhcChh--HHHHHHHHHHhhcCceEEE Confidence 111111001000000 0111111111111000 00 00111111 1223455688899999999 Q ss_pred EEECCCCce------EEEEEecCcceeccccCc--------eEEEEcCCceE----------E----------------- Q lcl|Aclame:pro 115 KRYSTTGKV------IRLETSPAKYTRRGVEED--------VYWWVPSFNEP----------T----------------- 153 (344) Q Consensus 115 i~r~~~G~~------~~L~pl~~~~v~~~~~~~--------~~y~~~~~~~~----------~----------------- 153 (344) +.++..+.. ..+..++|..+.+..+.. .+|....++.. + T Consensus 79 v~~~~~~~~~~~~~~~~I~~~~p~~~~~i~D~~~~~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (434) T protein:vir:98 79 VGAHPTRTEDNGRPSPLITMEHPSECIVEYDPETGEPLVGLKVWHNDIDGFGYARVFFDDTSFPYRTRERTGARLPWGPD 158 (434) T ss_pred EecCCCcccccCCceeEEEEeccceeEEEEeCCCCceEEEEEEEEeccCCceEEEEEEeCcEEEEEEeeccccccccccc Confidence 988754431 236677776654332211 01111111100 0 Q ss_pred --------------EEecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHH Q lcl|Aclame:pro 154 --------------AFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRN 219 (344) Q Consensus 154 --------------~~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e 219 (344) .|..=-|+||++..-.++ .|+|-++.....+.....+..-..+..+-.+.|--+|. |..+++. T Consensus 159 ~~~~~~~~~~~~~h~~g~vPvv~f~N~~~~~~-~g~sd~e~vi~liDa~~~~~s~~~~~~~~~a~p~~~i~--G~~~~~~ 235 (434) T protein:vir:98 159 SWVYTGTADSGDVHDLGGMQLVEFARMPDLGE-DPEPEFAGVLDIQDRVNLGILNRMAASRFSGFRQKWIK--GHKFAKR 235 (434) T ss_pred cceecccccccccCCCCccceEEeccCCCcCc-CCcchhhhHHHHHHHHHHHHHHHHHHHHHhcchhhhhc--CCCcccc Confidence 000112556654322223 58887776666555555444444444444455544442 3222221 Q ss_pred H--HHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccc Q lcl|Aclame:pro 220 D--IEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGS 297 (344) Q Consensus 220 ~--~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~ 297 (344) . .......++..... .+.+++++. .+.++..+....- ..+++..+..+.+|+++=++|++.+|... ++++ T Consensus 236 ~~~~~~~~~~~~~~~~~--~~~i~~~~~----~~~~~~q~~~~~~-~~~~~~l~~~i~~~~~~~~~p~~~~~~~~-~n~S 307 (434) T protein:vir:98 236 TDPATGMTVVDQPFVPS--PSAVWASEG----ENTQFGQLDATDL-SGFLKEHASDVRDMLTISQTPTYLYATDL-VNIS 307 (434) T ss_pred cccccccchhhhhhhcc--ccccccCCC----CCceEEEecCcch-HHHHHHHHHHHHHHhcccCCCHHHhcccc-CChH Confidence 1 11112222222211 123444432 2345555443222 22888888889999999999999998531 1222 Q ss_pred cccHHHHHHHHHHHHHHHHHHHHH-----HHHH---hh-CCcceecccc--ccCCCCC Q lcl|Aclame:pro 298 LGDIEKVAKVFVRNELIPLQDRIR-----EING---WL-GQEVIRFKNY--SLDTDNG 344 (344) Q Consensus 298 ~~n~e~~~~~f~~~~l~P~~~~ie-----eln~---~L-~~~~~~f~~y--~l~~~~~ 344 (344) + + ...|....|.=.+.+.+ .+.+ .+ ..+......+ ++.+.+. T Consensus 308 g---~--Al~~~~~~l~~k~~~k~~~f~~~l~~~~rl~~~~~g~~~~~~~~~v~w~~~ 360 (434) T protein:vir:98 308 A---D--TIGALDILHVAKVREHIASFSEGLESVLALAAAQAGVPEDYTEAEVRWANP 360 (434) T ss_pred H---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhheeeeEEecCC Confidence 2 2 12222222222221111 1111 00 0000011111 1222223 No 147 >protein:vir:8184 Length: 474 # NCBI annotation: gp4 # Family: family:all:524 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817977;genbank:gi:29566411;genbank:GeneID:2700965 Probab=91.59 E-value=0.015 Score=30.56 Aligned_cols=316 Identities=7% Similarity=0.000 Sum_probs=102.7 Q ss_pred CCC---------------CCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHH Q lcl|Aclame:pro 1 MSK---------------KKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKS 65 (344) Q Consensus 1 msk---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~ 65 (344) |++ ++.+-.... ..-.+.....-..-.-|.. ++ .+-.++ .| +...+..++.. T Consensus 12 l~~~~~~~~~~L~~~~~~~~~~~~~~~--~Yy~G~~~~~~~~~~~p~~-~r--~~~~v~------nw--~~~~Vd~~a~r 78 (474) T protein:vir:81 12 LSNDENALINGLLAQIENLRWKNLLRT--SYYENKRTIQYVGTLIPPQ-YF--NLGLVL------GW--TGKAVDALARR 78 (474) T ss_pred CChhHHHHHHHHHHHHHHHhhHHHHHH--HHhccCCChhhccccccHH-HH--HHHhhc------Ch--HHHHHHHHHhh Confidence 111 111100000 0000000000000000000 00 000000 01 11111111111 Q ss_pred hhcchhhhhhhhhhhhh-HHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCce-EEEEEecCcceeccccCce- Q lcl|Aclame:pro 66 LRAAVHHSSPIYVKRNI-LASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKV-IRLETSPAKYTRRGVEEDV- 142 (344) Q Consensus 66 ~~~~~~~~~~i~~~~~~-~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~-~~L~pl~~~~v~~~~~~~~- 142 (344) ...++.... -....+. +-....-|.+. ........+.+.+|.+|+.+.++.+|++ +.+.+++|..+....+... T Consensus 79 l~~~Gf~~~-d~~~~~~~l~~iw~~N~ld--~~~~~~~~~al~~G~sf~~V~~~~d~~~~~~i~~~sp~~~~~~~D~~~~ 155 (474) T protein:vir:81 79 CNLEGFVWP-DGDLDSLGGTEVVDDNHLL--SEIDSAIVAAMQHGPAFLINTVGEDDEPEALIHVKDASEATGEWNRRRR 155 (474) T ss_pred hcccceECC-CCCccchHHHHHHHhcChh--HHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEeccceEEEEEeCCCC Confidence 111111000 0000000 00000111111 1123445688999999999998877775 4677888876653322110 Q ss_pred -----E--EEEcCCceE---EEEeccc-------------------------EEEecCCCCCCCccccccch----hhHH Q lcl|Aclame:pro 143 -----Y--WWVPSFNEP---TAFAPGS-------------------------VFHLLEPDINQELYGLPEYL----SALN 183 (344) Q Consensus 143 -----~--y~~~~~~~~---~~~~~~e-------------------------ViH~r~~~~~~~~~G~sp~~----~~~~ 183 (344) + +....+|.. ..|.++. |++|.+..-.++.+|.|.+. .+.+ T Consensus 156 ~~~~al~~~~~~~~g~~~~~~ly~~~~~~~~~~~~~~~~w~~~~~~~~~gvPvV~~~n~~~~~~~~G~s~i~e~v~~l~d 235 (474) T protein:vir:81 156 GLNNLLSIIDKDKEGKVLSLALYLDNETVTAQRDKATLKWQVDRDEHVYGVPAQVLPYKPAPKRPFGQSRITKPMMGLQD 235 (474) T ss_pred cceeeeEEEEEcCCCcEEEEEEEeCCcEEEEEEcCccceeeeccCCCCCCcceEEecccccccCcCCccccchhHHHHHH Confidence 0 111111110 1111111 44544322223456777553 3333 Q ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEE-eCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCc-----cccceeeec Q lcl|Aclame:pro 184 SAWLNESATLFRRKYYENGAHAGYIMY-VTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGK-----ADGIKIIPL 257 (344) Q Consensus 184 ~i~~~~aa~~~~~~~f~ng~~p~gil~-~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~-----~~gl~~~pl 257 (344) .+.-...-......||.. |--++. .......+++. .-...|+...+ +++.+..+.+ ..+.++..+ T Consensus 236 a~~r~~~~~~~~~e~~a~---pqr~i~G~~~~~~~d~d~-~~~~~~~~~~~-----~i~~~~~d~d~~~~~~~~~~~~q~ 306 (474) T protein:vir:81 236 AGVRELARREGHMDVFSY---PEFWLLGADESALKNADG-TIKSVWEARLG-----RIKGLPDDADADIPQLARADVKQF 306 (474) T ss_pred HHHHHHHHHHHHHHHhcc---hhheeecCChhhcccccc-cccchhhhhHH-----HHhcCCCccccccccccccccccc Confidence 333333333334444444 332321 11111111110 11122322211 1121211100 012334333 Q ss_pred ccchhHHH-HHHHHhhhHHHHHHHhcCCHHHhccccccc-cccccHHHHHHHHHHHHHHHHHH----HHHHHHHhh---- Q lcl|Aclame:pro 258 SEVATKDD-FFNIKKASAADLLDAHRIPFQLMGGKPENV-GSLGDIEKVAKVFVRNELIPLQD----RIREINGWL---- 327 (344) Q Consensus 258 ~~~~~d~q-~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~-~~~~n~e~~~~~f~~~~l~P~~~----~ieeln~~L---- 327 (344) .. .+++ |++..+..+..||+.=++|++.+|+....+ ++...+......+...+ .=..+ .|+++.+.. T Consensus 307 ~~--a~l~~~~~~l~~~~~~~a~~t~iP~~~lG~~~~~np~SaeAi~a~~~~l~~ka-e~k~~~fg~~l~~~~rla~~i~ 383 (474) T protein:vir:81 307 PA--ASPDAHWSDINGLAKLFAREASLPDTAVAISGLSNPTSAESYDASQYELIAEA-EGAVDDFTPALRKAFIRALAMK 383 (474) T ss_pred CC--CChhHHHHHHHHHHHHHHhhhCCCHHHhcccccccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh Confidence 32 3344 999999999999999999999999753222 22212222221111111 00011 111111111 Q ss_pred CC---cc---------eeccccccCCCCC Q lcl|Aclame:pro 328 GQ---EV---------IRFKNYSLDTDNG 344 (344) Q Consensus 328 ~~---~~---------~~f~~y~l~~~~~ 344 (344) +. .. ++|.+.+.-..-. T Consensus 384 ~~~~~~~~~~~~~~~~v~W~d~~~~s~a~ 412 (474) T protein:vir:81 384 NKVAIDEIPDEWKSIDAKWRDPRYLSKSA 412 (474) T ss_pred CCCCccccchhhccceeEecCCCccCHHH Confidence 11 00 1121111111100 No 148 >protein:vir:78589 Length: 695 # NCBI annotation: NUDIX hydrolase # Family: family:all:297 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294854;genbank:gi:149882917;genbank:GeneID:5291060 Probab=91.05 E-value=0.018 Score=30.18 Aligned_cols=321 Identities=14% Similarity=0.123 Sum_probs=129.7 Q ss_pred CCCCCCCCCCCchh----------hc--------cccc-cc-------------eEEEEcCCccccccchhHHHHhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAK----------KM--------TASA-PK-------------MEAFTFGEPVPVLDRRDILDYVECIS 48 (344) Q Consensus 1 msk~~~~~~~~~~~----------~~--------~~~~-~~-------------~~~~~~~~p~~~~~~~~v~~~~~~~~ 48 (344) ||.|..+++++-.. +. +.++ .+ ..+-....|.+.++....|. +++-. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (695) T protein:vir:78 1 MSRRNAKKRTQLAHTGRRPEVAKAAALAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFE-VDVSN 79 (695) T ss_pred CCccchhhhhhhhhcCCCcchhhhhhhhhhhhhhhhccccccchhhcccccccccccccccCCCcccccceece-ecccc Confidence 99876665443211 10 1110 00 00111223444444333332 21111 Q ss_pred cCcceecc--------------ccHH---------HHHHHhhcchhhhhhhhhhhhhHHHhc--cc-------------- Q lcl|Aclame:pro 49 NGRWYEPP--------------ISFT---------GLAKSLRAAVHHSSPIYVKRNILASTF--IP-------------- 89 (344) Q Consensus 49 ~~~~~~~p--------------~~~~---------~l~~~~~~~~~~~~~i~~~~~~~~~~~--~p-------------- 89 (344) .+..-..+ ++++ .|+.+... +.+.+....+... ++ T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~~la~laQ~------~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~ 153 (695) T protein:vir:78 80 YTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQL------PEYRAMHEVLADECIRTWGEAIGGTKEKADT 153 (695) T ss_pred CCccccchhhhhhcccccccccchhhhccCcchHHHHHHHhhc------cchhhHHHHHHHHhhcccceeccccchhhhh Confidence 11111111 1110 01111110 0011111111000 00 Q ss_pred -------C--CCCC----------------HHHHHHHHHHHHhcCCeEEEEEECC-----------------CCceEEEE Q lcl|Aclame:pro 90 -------H--PWLS----------------QQDFSRFVLDFLVFGNAFLEKRYST-----------------TGKVIRLE 127 (344) Q Consensus 90 -------n--~~~~----------------~~~f~~~~~~~ll~Gnay~~i~r~~-----------------~G~~~~L~ 127 (344) | .... +..|.+.+..--++|-+.+++.-.+ .|..++|. T Consensus 154 ~g~~~~~~~~~~~d~dqi~~L~~e~erL~V~~~l~eaik~aRlfGGa~~~i~i~gdd~~l~~PL~~~~~~I~kGslKGl~ 233 (695) T protein:vir:78 154 SGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLR 233 (695) T ss_pred hcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccceEEEEEeccCccccccccccccccccCcceeeeE Confidence 0 0000 0112222223336787765553322 35666788 Q ss_pred EecCcceeccccC-----------ceEEEEcCCceEEEEecccEEEecCCCC------CCCccccccchhhHHHHHHHHH Q lcl|Aclame:pro 128 TSPAKYTRRGVEE-----------DVYWWVPSFNEPTAFAPGSVFHLLEPDI------NQELYGLPEYLSALNSAWLNES 190 (344) Q Consensus 128 pl~~~~v~~~~~~-----------~~~y~~~~~~~~~~~~~~eViH~r~~~~------~~~~~G~sp~~~~~~~i~~~~a 190 (344) .++++++.+.... ..||++. |. .+.++-++.|..... ...+.|+|..+.+.+.+..... T Consensus 234 ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~--G~--kIH~SRL~~f~g~plPd~LKp~y~~~GiSv~q~~~e~V~~~~r 309 (695) T protein:vir:78 234 VVEPYWVTPNNYNSINPVADDFYKPSTWWMI--GT--EVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLR 309 (695) T ss_pred eecccccccchhhhccchhhccCCCceEEEe--ce--EEeeeeEEEecCCCchhhhhcccccCcccHHHHHHHHHHHHHH Confidence 8999888764321 1245553 22 344455544443211 1235699999998888777666 Q ss_pred HHHHHHHHHHhcCCCceEEEeCC-CCCCHHHHHHHH---HHHHHhhccccccccccccCCCccccceeeecccchhHHHH Q lcl|Aclame:pro 191 ATLFRRKYYENGAHAGYIMYVTD-AVQDRNDIEMLR---ENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDF 266 (344) Q Consensus 191 a~~~~~~~f~ng~~p~gil~~~~-~~l~~e~~~~lk---~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~ 266 (344) +......+... .+..++ ++.- ..+.......+. +.++.++ +|.+ +.+++. +.-+|...+.+... + T Consensus 310 T~~~v~~Li~~-~~v~~l-k~dla~~L~~g~~~~l~~R~eli~~~R--sn~G-~~llDk----~~Eefeq~stslSG--L 378 (695) T protein:vir:78 310 TRQSVSDIVKQ-FSVSGI-LMDLAQALMPGANVDLSMRAELINRYR--DNRN-ILFLDK----ATEEFFQFNTPLSG--L 378 (695) T ss_pred HHhHHHHHHHh-hhhHHH-HHHHHHhhcChhHHHHHHHHHHHHHhc--Cccc-eEEEec----CCcceEEEecccCC--H Confidence 66666655544 233333 1110 112222222233 3334444 3444 445542 12245554433322 2 Q ss_pred HHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHH-------HHHHHHHHHHH-HHHh-hCCc--ceecc Q lcl|Aclame:pro 267 FNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRN-------ELIPLQDRIRE-INGW-LGQE--VIRFK 335 (344) Q Consensus 267 ~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~-------~l~P~~~~iee-ln~~-L~~~--~~~f~ 335 (344) -+......+.||.+-+||..+|=..+..+- .++-|...+.||.. .|.|.++++-+ |-+- +|.- .+.|. T Consensus 379 ddVi~qf~q~VAgaa~IPltkLfGqSPkGl-NATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~idpdi~~~ 457 (695) T protein:vir:78 379 DALQAQAQEQMSAVSHIPLIKLLGITPTGL-NASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQ 457 (695) T ss_pred HHHHHHHHHHHHhhhcCchhhhhccCCccc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEE Confidence 223334557799999999988643332211 13445555666543 56676665433 2222 2321 12221 Q ss_pred cccc-CCCCC Q lcl|Aclame:pro 336 NYSL-DTDNG 344 (344) Q Consensus 336 ~y~l-~~~~~ 344 (344) ..-| +.+|- T Consensus 458 fnPL~qmtd~ 467 (695) T protein:vir:78 458 WNALRELDDL 467 (695) T ss_pred eCCCCCcCHH Confidence 1111 12222 No 149 >protein:vir:2427 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046829;genbank:gi:9630397;genbank:GeneID:1261620 Probab=90.41 E-value=0.021 Score=29.78 Aligned_cols=296 Identities=9% Similarity=0.047 Sum_probs=102.8 Q ss_pred CCCCCCCCCCC-chhhccccccceEEEEcCCccccccch--hHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQP-AAKKMTASAPKMEAFTFGEPVPVLDRR--DILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIY 77 (344) Q Consensus 1 msk~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~--~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~ 77 (344) -.|.+-+.... .+... ... ..+...+ -|-.++.+. ....+..+ . +......++ T Consensus 40 ~G~~~i~~~~~~~~~~~----~~~--------~~~~n~~~~ivd~~~~~l-~~~g~~~~-------~----~~~~~~~l~ 95 (485) T protein:vir:24 40 EAERRPEAIGVTVPVQM----QSL--------LAHVGYPRLYVDSIAERQ-AVEGFRLG-------D----ADEADEELW 95 (485) T ss_pred hccCchhhcCcccchhh----hhh--------hhccchHHHHHHHHhhhh-ccCceecC-------C----CchhHHHHH Confidence 11111000000 00000 000 0000000 000000000 00001111 0 000000000 Q ss_pred hhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCce-------EEEEEecCcceeccccCc-----eE-- Q lcl|Aclame:pro 78 VKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKV-------IRLETSPAKYTRRGVEED-----VY-- 143 (344) Q Consensus 78 ~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~-------~~L~pl~~~~v~~~~~~~-----~~-- 143 (344) .. ..-|.+ -.....+..+.+.+|.||+.+.++..+.. ..+.+++|..+.+..+.. .+ T Consensus 96 ----~i---~~~N~~--d~~~~~~~~~a~i~G~ay~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~~i~D~~~~~~~~~~~ 166 (485) T protein:vir:24 96 ----QW---WQANNL--DIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNVPLIRVEPPTRMYAEIDPRIGRPAKAIR 166 (485) T ss_pred ----HH---HHhcCh--hHHHHHHHHHHhhcCceEEEEecCCcccccccCCCcceEEEeccceeEEEeeCCcCceeEEEE Confidence 00 011111 12345677899999999999988865432 257777776654332211 00 Q ss_pred ----------------------EEEcCCceEE-------EEecccEEEecCCCCCCCccccccchh-hHHHHHHHHHHHH Q lcl|Aclame:pro 144 ----------------------WWVPSFNEPT-------AFAPGSVFHLLEPDINQELYGLPEYLS-ALNSAWLNESATL 193 (344) Q Consensus 144 ----------------------y~~~~~~~~~-------~~~~~eViH~r~~~~~~~~~G~sp~~~-~~~~i~~~~aa~~ 193 (344) +.+..++... .|..=-|+||++..-..+.+|.|.+.- ....+.....+.. T Consensus 167 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s 246 (485) T protein:vir:24 167 VAYDAEGNEIQAATLYTPNETFGWFRAEGEWVEWFSDPHGLGAVPVVPLPNRTRLSDLYGTSEITPELRSMTDAAARILM 246 (485) T ss_pred EEEeecCCeEEEEEEEcCCcEEEEEecCCceEeecccccCCCcccEEEeccCcccCCcCCcccchhhHHHHHHHHHHHHH Confidence 0111111110 000112566664433456678887653 2222222222222 Q ss_pred HHHHHHHhcCCCceEEEeCCCCCCHHHHHH--HHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHh Q lcl|Aclame:pro 194 FRRKYYENGAHAGYIMYVTDAVQDRNDIEM--LRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKK 271 (344) Q Consensus 194 ~~~~~f~ng~~p~gil~~~~~~l~~e~~~~--lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~ 271 (344) -........+.|--++. +..+++...+. -...|+.. .+.++.+.. ++.++..+....-+ .+++..+ T Consensus 247 ~~~~~~~~~a~p~~~i~--G~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~----~~~~~~q~~~~~~e-~~~~~l~ 314 (485) T protein:vir:24 247 LMQATAELMGVPQRLIF--GIKPEEIGVDPETGQTLFDAY-----LARILAFED----AEGKIQQFSAAELA-NFTNALD 314 (485) T ss_pred HHHHHHHhhcchhhhhc--cCCccccccccccccchhhhc-----ccceeccCC----CCceEEeecccchH-HHHHHHH Confidence 22222233344544432 32221111110 11122211 223444431 23445444432222 3777777 Q ss_pred hhHHHHHHHhcCCHHHhccccccccccccHHHHHH----------HHHHHHHHHHHHHHHHHHHhhCCcceec--ccccc Q lcl|Aclame:pro 272 ASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAK----------VFVRNELIPLQDRIREINGWLGQEVIRF--KNYSL 339 (344) Q Consensus 272 ~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~----------~f~~~~l~P~~~~ieeln~~L~~~~~~f--~~y~l 339 (344) ....+++..=++|+..+|....+.+++.-+..... ..+...|.-.++.+..+ ++.....+ ..-++ T Consensus 315 ~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~---~~~~~~~~d~~~i~v 391 (485) T protein:vir:24 315 QIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNAIFGGAWEEAMRLAYRL---MKGGDVPPDMLRMET 391 (485) T ss_pred HHHHHHhcccCCCHHHhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCccccceeeE Confidence 78888888889999999864322222211111111 11111222211111111 11111111 12222 Q ss_pred CCCCC Q lcl|Aclame:pro 340 DTDNG 344 (344) Q Consensus 340 ~~~~~ 344 (344) .|.+. T Consensus 392 ~f~~~ 396 (485) T protein:vir:24 392 VWRDP 396 (485) T ss_pred EecCC Confidence 33333 No 150 >protein:vir:99522 Length: 470 # NCBI annotation: putative protein # Family: family:all:125 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958533;genbank:gi:41179315;genbank:GeneID:2717160 Probab=90.26 E-value=0.022 Score=29.70 Aligned_cols=318 Identities=9% Similarity=-0.058 Sum_probs=111.2 Q ss_pred CCCCCCCCCCCchhhccc----cccc-----------eEEEE----cCCccccccchhHHHHhhhhhcCcceeccccHHH Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTA----SAPK-----------MEAFT----FGEPVPVLDRRDILDYVECISNGRWYEPPISFTG 61 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~----~~~~-----------~~~~~----~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~ 61 (344) |.+...-......+-... ..+. -.... -..|..-+.. .+...+--...+-.+-.|+.+.. T Consensus 19 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~l~~Yy~g~~~i~~~~~~~~~~~~ki~~-n~~~~Ivd~~~~~l~g~p~~~~~ 97 (470) T protein:vir:99 19 FPKGEKLTSNELLGFIAYNETVLKPRYRENMKLYLGKHKILTAPEKETGADNRIVV-NSAKYVVDVYNGYFCGIEPKLAL 97 (470) T ss_pred eCCCCCcCHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccCcccccCCcceeec-chHHHHHHHHhhhhccCCeeEee Confidence 111111100000000000 0000 00000 0000000000 01111000001111112222100 Q ss_pred HHHHhhcchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc Q lcl|Aclame:pro 62 LAKSLRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED 141 (344) Q Consensus 62 l~~~~~~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~ 141 (344) -. +......+.. ...-|.+ ...+..++.+.+.+|.+|+.+.++.+|++ .+..++|..+.+..+.. T Consensus 98 ~~-----d~~~~~~l~~-------~~~~n~~--~~~~~~~~~~~~~~G~~~~~v~~d~dg~~-~i~~~~p~~~~~i~d~~ 162 (470) T protein:vir:99 98 LN-----DSSKIDEIAR-------WNRQENF--FDTINEISKQCDIFGRSIASIYQGEDARP-HLMYSSPNHAFIIYDDT 162 (470) T ss_pred CC-----chhHHHHHHH-------HHHhcCH--hHHHHHHHHHHHhcCeeEEEEEeCCCCeE-EEEEEccceeEEEEcCC Confidence 00 0000000000 0011111 13345677788999999999999888876 46777777664432221 Q ss_pred ---------eEEEEcCCceE----EEEecccEEEecCCC------------------C----CCCccccccchhhHHHHH Q lcl|Aclame:pro 142 ---------VYWWVPSFNEP----TAFAPGSVFHLLEPD------------------I----NQELYGLPEYLSALNSAW 186 (344) Q Consensus 142 ---------~~y~~~~~~~~----~~~~~~eViH~r~~~------------------~----~~~~~G~sp~~~~~~~i~ 186 (344) ++|....++.. ..+..+.++++...+ | .+.-.|.|-+......+. T Consensus 163 ~~~~~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liD 242 (470) T protein:vir:99 163 VQRQPLAFVHYQIDNSNNWTDAYGVIQYADKFYKFKGYDIEEDTNAAGYAINPYGLVPAVEFFENEERQGIFDSIKTLIN 242 (470) T ss_pred CCcceEEEEEEEEEecCCeeEEEEEEEecCeEEEEEecccccccccccccccCCCccceEeecCCCCCCcchHhHHHHHH Confidence 01211111111 112222222221100 0 012246666665555555 Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHH Q lcl|Aclame:pro 187 LNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDF 266 (344) Q Consensus 187 ~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~ 266 (344) ....+..-..+.+...+.|-.++. +..++++........+.. .+++.+.+.....+-++..++.......+ T Consensus 243 a~~~~~s~~~~~~~~~~~~~~~i~--g~~~~~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (470) T protein:vir:99 243 ALDKVISQKANQVEYFDNAYMYMI--GFKLPEDDEGNPKFDFKN-------NRVLYVSQLDPDTNPQIGFIAKPDADQMQ 313 (470) T ss_pred HHHHHHHHHHHHHHHhcCceeeee--cCCcccccccchhhhhhh-------cceeeecCCCCCCCCcceEEeecCChHHH Confidence 444444444445566666655553 433333221111112211 12222222111223334445444455556 Q ss_pred HHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHH----------HHHHHHHHHHHHHHHHHHHHhhCCcceeccc Q lcl|Aclame:pro 267 FNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVA----------KVFVRNELIPLQDRIREINGWLGQEVIRFKN 336 (344) Q Consensus 267 ~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~----------~~f~~~~l~P~~~~ieeln~~L~~~~~~f~~ 336 (344) .+..+.-.+.|+..-++|+...+-.. ++.++.-++... ...+...|.-.++.+.++-...+........ T Consensus 314 ~~~~~~l~~~i~~~s~~p~~~~~~~~-~n~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~ 392 (470) T protein:vir:99 314 ENLIQHLTDFIFMMAMVPNIQDKNFA-GNSSGVALQYKLFAMKNKADSKERKFDKSLMQLYRIVLATLFNNKQDQELWSE 392 (470) T ss_pred HHHHHHHHHHHHHHhCCccccccccc-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccc Confidence 67778888999999999976543221 112211111110 1112222222222221111001111111223 Q ss_pred cccCCCCC Q lcl|Aclame:pro 337 YSLDTDNG 344 (344) Q Consensus 337 y~l~~~~~ 344 (344) .++.|.++ T Consensus 393 i~v~f~~~ 400 (470) T protein:vir:99 393 LDFKFTRN 400 (470) T ss_pred ceEEeCCC Confidence 34445555 No 151 >protein:vir:104082 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655593;genbank:gi:109392464;genbank:GeneID:4156950 Probab=87.57 E-value=0.038 Score=28.38 Aligned_cols=301 Identities=12% Similarity=0.051 Sum_probs=104.2 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCcccccc------------chhHHHHhhhhhcCcc-eeccccHH-HHHHHh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLD------------RRDILDYVECISNGRW-YEPPISFT-GLAKSL 66 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------------~~~v~~~~~~~~~~~~-~~~p~~~~-~l~~~~ 66 (344) || .+-+.+. .-++++.++. ...+.+|. .+... -..+...- .+.... T Consensus 1 ~~---------------~~i~~~~--~~~~~~~~~~~l~~~~~~~~~r~~~~~~Yy---~G~~~i~~~~~~~~~~~~~~~ 60 (485) T protein:vir:10 1 MT---------------APLPGQE--EIEDPAIARDEMVSAFEDSTQNLKTNTSYY---EAERRPEAIGVTVPIQMQSLL 60 (485) T ss_pred CC---------------CCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCcchhcCCCCChhhhhhh Confidence 22 1111110 0111211110 00111111 11110 01111110 111111 Q ss_pred hcchhhhhhhhhhhhhHHHhcccCCCCC------HH-------------HHHHHHHHHHhcCCeEEEEEECCCCc----- Q lcl|Aclame:pro 67 RAAVHHSSPIYVKRNILASTFIPHPWLS------QQ-------------DFSRFVLDFLVFGNAFLEKRYSTTGK----- 122 (344) Q Consensus 67 ~~~~~~~~~i~~~~~~~~~~~~pn~~~~------~~-------------~f~~~~~~~ll~Gnay~~i~r~~~G~----- 122 (344) ....+...++......+ .++.+.. .. ....+..+.+.+|.||+.+.++..+. T Consensus 61 ~~~n~~~~ivd~~~~~l----~~~g~~~~~~~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~~e~~~~~~~~ 136 (485) T protein:vir:10 61 AHVGYPRLYVDSIAERQ----AVEGFRFGDADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWD 136 (485) T ss_pred hhcCcHHHHHHHHHhhh----cccceecCCCchhHHHHHHHHHhcCHhHHHHHHHHHHhhcCceEEEEeeCCcccccccC Confidence 11122222222211111 1222111 11 11234457789999999998875432 Q ss_pred --eEEEEEecCcceeccccCc---e-----EEEEcCCce---EEEEecc-------------------------cEEEec Q lcl|Aclame:pro 123 --VIRLETSPAKYTRRGVEED---V-----YWWVPSFNE---PTAFAPG-------------------------SVFHLL 164 (344) Q Consensus 123 --~~~L~pl~~~~v~~~~~~~---~-----~y~~~~~~~---~~~~~~~-------------------------eViH~r 164 (344) ...+.+++|..+.+..+.. . ++....++. ...+.++ -|+||. T Consensus 137 ~~~~~i~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~ 216 (485) T protein:vir:10 137 PNTPIIRVEPPTRMYAEIDPRIGRVSKAIRVAYDAEGNEIQAATLYTPNDIFGWYRVENEWQEWFNNPHGLGVVPVVPIP 216 (485) T ss_pred CCeeEEEEEccceeEEEEcCCCCceeEEEEEEEeeCCCeEEEEEEEeCCeEEEEEEcCCceEEeccccCCCCcccEEEec Confidence 2346777776654332211 0 011011111 0011122 245555 Q ss_pred CCCCCCCccccccchh----hHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHH--HHHHHHHhhcccccc Q lcl|Aclame:pro 165 EPDINQELYGLPEYLS----ALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEM--LRENMVKSKGRNNFK 238 (344) Q Consensus 165 ~~~~~~~~~G~sp~~~----~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~--lk~~~~~~~g~~n~~ 238 (344) +..-..+.+|.|.+.- +...+.....-......||. .|--++ .+..+++...+. -...|+.. .+ T Consensus 217 n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a---~p~~~i--~G~~~~~~~~~~~~~~~~~~~~-----~~ 286 (485) T protein:vir:10 217 NRTRLSDLYGTSEITPELRSMTDAAARILMLMQATAELMG---VPQRLI--FGIKPEEIGVDPETGQTLFDAY-----LA 286 (485) T ss_pred cccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhc---chHHHH--hcCCcccccccccccchhhhhc-----cc Confidence 4322345677776542 23333332222222233333 343333 222121111110 01112211 23 Q ss_pred ccccccCCCccccceeeecccchhHHH-HHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHH--------- Q lcl|Aclame:pro 239 NLFLYAPQGKADGIKIIPLSEVATKDD-FFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVF--------- 308 (344) Q Consensus 239 ~~~vl~~~~~~~gl~~~pl~~~~~d~q-~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f--------- 308 (344) .++.+.. .+.++..+... +++ +++..+....+|+.+=++|++.+|....+.+++.-++.....+ T Consensus 287 ~i~~~~~----~d~k~~q~~~~--~~~~~~~~l~~~i~~~~~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~k~~~k~~ 360 (485) T protein:vir:10 287 RILAFED----AEGKIQQFSAA--ELANFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNS 360 (485) T ss_pred ceeccCC----CCceEEeeccc--chHHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHH Confidence 4444421 23445444332 233 8888888888899999999999986432222221122111111 Q ss_pred -HHHHHHHHHHHHHHHHHhhCCcceecccc--ccCCCCC Q lcl|Aclame:pro 309 -VRNELIPLQDRIREINGWLGQEVIRFKNY--SLDTDNG 344 (344) Q Consensus 309 -~~~~l~P~~~~ieeln~~L~~~~~~f~~y--~l~~~~~ 344 (344) +...|.-.++.+..+. +.....++.+ ++.+.+. T Consensus 361 ~f~~~l~~~~~l~~~~~---~~~~~~~~~~~i~v~w~~~ 396 (485) T protein:vir:10 361 IFGGAWEEAMRLAYRMM---KGGDVPPDMLRMETVWRDP 396 (485) T ss_pred HHHHHHHHHHHHHHHHh---CCCCCcccceeeeEEecCC Confidence 1112222221111111 1111111111 2222222 No 152 >protein:vir:101541 Length: 694 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958122;genbank:gi:41057668;genbank:GeneID:2716798 Probab=80.95 E-value=0.09 Score=26.31 Aligned_cols=321 Identities=14% Similarity=0.124 Sum_probs=129.1 Q ss_pred CCCCCCCCCCCchh----------h------c--cccccceEE-------E------EcCCccccccchhHHHHhhhhhc Q lcl|Aclame:pro 1 MSKKKGKTLQPAAK----------K------M--TASAPKMEA-------F------TFGEPVPVLDRRDILDYVECISN 49 (344) Q Consensus 1 msk~~~~~~~~~~~----------~------~--~~~~~~~~~-------~------~~~~p~~~~~~~~v~~~~~~~~~ 49 (344) ||.|..+++++-.. + . ++.+.++.+ + .-..|.+.++.+..|. +..... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 79 (694) T protein:vir:10 1 MSRRNAKKRTQLARTGRRPEVAKAAALAAAATIATAAAQPVPADFARRGALNALDAAPVAEPSPSLRLARQFE-VDVSNY 79 (694) T ss_pred CCccchhhHHHHhhcCCCcchhhhhhhhhhhhhhhcCCCcccCCccccccchhhcccccCCCCcchhhhhhcc-ccccCC Confidence 99876655433211 1 0 111111110 0 1123444444433332 111111 Q ss_pred Ccc--------------eeccccHH---------HHHHHhhcchhhhhhhhhhhhhHHHhc--cc--------------- Q lcl|Aclame:pro 50 GRW--------------YEPPISFT---------GLAKSLRAAVHHSSPIYVKRNILASTF--IP--------------- 89 (344) Q Consensus 50 ~~~--------------~~~p~~~~---------~l~~~~~~~~~~~~~i~~~~~~~~~~~--~p--------------- 89 (344) +.. .+--++++ .|+.+... +.+.+....+... ++ T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~~la~laQ~------~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~~ 153 (694) T protein:vir:10 80 TPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQL------PEYRAMHEVLADECIRTWGEAIGGTKEKADTS 153 (694) T ss_pred CccccchhhhhhccCcccccchhhhhccCcchHHHHHHHhhc------cchhhHHHHHHHHhhcccceeccccchhhhhh Confidence 000 01111110 01111110 0011111111000 00 Q ss_pred ------C--CCCC----------------HHHHHHHHHHHHhcCCeEEEEEEC-----------------CCCceEEEEE Q lcl|Aclame:pro 90 ------H--PWLS----------------QQDFSRFVLDFLVFGNAFLEKRYS-----------------TTGKVIRLET 128 (344) Q Consensus 90 ------n--~~~~----------------~~~f~~~~~~~ll~Gnay~~i~r~-----------------~~G~~~~L~p 128 (344) | .... +..|...+..--++|-+.+++.-. +.|..++|.. T Consensus 154 g~~~~~~~~~~~d~dqi~~L~~e~erl~V~~~l~eaik~aRlfGGa~~~i~I~gdd~~l~~PL~~~~~~I~kGslKGl~V 233 (694) T protein:vir:10 154 GLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRV 233 (694) T ss_pred cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccceEEEEEeecCccccccccccccccccCcceeeeEe Confidence 0 0000 011222222333678776555322 2356667888 Q ss_pred ecCcceeccccC-----------ceEEEEcCCceEEEEecccEEEecCCCC------CCCccccccchhhHHHHHHHHHH Q lcl|Aclame:pro 129 SPAKYTRRGVEE-----------DVYWWVPSFNEPTAFAPGSVFHLLEPDI------NQELYGLPEYLSALNSAWLNESA 191 (344) Q Consensus 129 l~~~~v~~~~~~-----------~~~y~~~~~~~~~~~~~~eViH~r~~~~------~~~~~G~sp~~~~~~~i~~~~aa 191 (344) ++++++.+.... ..||++. |. .+.++-++.|..... ...+.|+|..+.+.+.+.....+ T Consensus 234 iDp~~vtP~~~n~~dP~spdfgkP~~y~V~--G~--~IH~SRL~~f~g~plPd~LKp~y~~~G~Sv~q~~~e~V~~~~rT 309 (694) T protein:vir:10 234 VEPYWVTPNNYNSINPVADDFYKPSTWWMI--GT--EVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRT 309 (694) T ss_pred ecccccccchhhhccchhhccCCCceEEEe--ce--EEeeeeEEEecCCCchhhhhcccccCcccHHHHHHHHHHHHHHH Confidence 999888764321 1245553 22 344455544443211 12356999999988887776666 Q ss_pred HHHHHHHHHhcCCCceEEEeCC-CCCCHHHHHHHH---HHHHHhhccccccccccccCCCccccceeeecccchhHHHHH Q lcl|Aclame:pro 192 TLFRRKYYENGAHAGYIMYVTD-AVQDRNDIEMLR---ENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFF 267 (344) Q Consensus 192 ~~~~~~~f~ng~~p~gil~~~~-~~l~~e~~~~lk---~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~ 267 (344) ......+... .+..++ ++.- ..+.......+. +.++.++ +|.| +.+++. +.-+|...+.+... +- T Consensus 310 ~~~v~~Li~~-~~v~~l-k~dla~~L~~g~~~~l~~R~eli~~~R--sn~G-~~llDk----~~Eefeq~stslSG--Ld 378 (694) T protein:vir:10 310 RQSVSDIVKQ-FSVSGI-LMDLAQALMPGANVDLSMRAELINRYR--DNRN-ILFLDK----ATEEFFQFNTPLSG--LD 378 (694) T ss_pred HhHHHHHHHh-hhhHHH-HHHHHHhhcChhHHHHHHHHHHHHHhc--Cccc-eEEEec----CCcceEEEecccCC--HH Confidence 6666555544 233333 1110 112222222232 3334444 3444 445542 12245554433322 22 Q ss_pred HHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHH-------HHHHHHHHHHH-HHHh-hCCc--ceeccc Q lcl|Aclame:pro 268 NIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRN-------ELIPLQDRIRE-INGW-LGQE--VIRFKN 336 (344) Q Consensus 268 e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~-------~l~P~~~~iee-ln~~-L~~~--~~~f~~ 336 (344) +......+.||.+-+||..+|=..+..+- .++-|...+.||.. .|.|.++++-+ |-+- +|.- .+.|.. T Consensus 379 dVi~qf~q~VAgaa~IPltkLfGqSPkGl-NATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~idp~i~~~f 457 (694) T protein:vir:10 379 ALQAQAQEQMSAVSHIPLIKLLGITPTGL-NASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQW 457 (694) T ss_pred HHHHHHHHHHHhhhcCchhhhhccCcccc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEEe Confidence 23334557799999999988643332211 13445555666543 56676665433 2222 2321 122211 Q ss_pred ccc-CCCCC Q lcl|Aclame:pro 337 YSL-DTDNG 344 (344) Q Consensus 337 y~l-~~~~~ 344 (344) .-| +.+|- T Consensus 458 nPL~qmtd~ 466 (694) T protein:vir:10 458 NALRELDDL 466 (694) T ss_pred CCCCCcCHH Confidence 111 12222 No 153 >protein:vir:95806 Length: 440 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950583;genbank:gi:119953778;genbank:GeneID:5076876 Probab=77.97 E-value=0.12 Score=25.65 Aligned_cols=315 Identities=10% Similarity=0.002 Sum_probs=106.1 Q ss_pred CCCCCCCCCCCchhhccccccc-----eEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPK-----MEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSP 75 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~-----~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~ 75 (344) .++++++...-. ..-.+... -..-..+.|..-+.. .+...+--...+-....|+.+..- +...... T Consensus 6 ~~~~~~r~~~l~--~yy~g~~~~~~~~~~~~~~~~~~~ki~~-n~~~~ivd~~~~~l~g~~~~~~~~------~~~~~~~ 76 (440) T protein:vir:95 6 LGSQKQRLAILA--SYAQGDNFSILSGHRRLDDEKADYRVRH-KWGGYISSFATGYVIGNPVSIGVM------EGGSADQ 76 (440) T ss_pred HHHHHHHHHHHH--HHhccCCcccccccccccccCCcceeec-chHHHHHHhhhhheeccCceEeeC------CCccHHH Confidence 111111100000 00000000 000000000000000 001110000011111112221000 0000000 Q ss_pred hhhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc----e-----EEEE Q lcl|Aclame:pro 76 IYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED----V-----YWWV 146 (344) Q Consensus 76 i~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~----~-----~y~~ 146 (344) . +.+.-...-|.+ ...+..+..+.+.+|.+|..+..+.+|++ .+..++|..+.+..+.. . +|.. T Consensus 77 ~----~~l~~~~~~n~~--~~~~~~~~~~~~~~G~a~~~~~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~ 149 (440) T protein:vir:95 77 L----STIKDIEWQNDI--NALNSDLAFDASVYGRAYEYHFRDKDKVD-RVVLISPLEMFVIRDLTVEQNIIAAVHLPIY 149 (440) T ss_pred H----HHHHHHHHhcCH--hHHHHHHHHHHhhcCeEEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEe Confidence 0 000000011111 12244566788999999999999988875 35666776655432211 0 1111 Q ss_pred cCCceEEEEeccc----------------------------EEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 147 PSFNEPTAFAPGS----------------------------VFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKY 198 (344) Q Consensus 147 ~~~~~~~~~~~~e----------------------------ViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~ 198 (344) ........+.++. |+++++. ..|.|-+......+..-..+..-..+. T Consensus 150 ~~~~~~~vyt~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~-----~~g~sd~e~v~~lida~~~~~s~~~~~ 224 (440) T protein:vir:95 150 ADKVNMTVYTKDKVITYKPYSNNSVRLVVDDVKKHSYNDVPVVEWWNN-----RFRMGDYESEISLIDAYDAGQSDTANY 224 (440) T ss_pred cCceEEEEEeCCeEEEEEEecCCccceeecceeeccCceeeEEEeeCC-----CCCCCchhhhHHHHHHHHHHHHHHHHH Confidence 1111111122222 3344321 235666655544444433333333344 Q ss_pred HHhcCCCceEEEeC--CCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHH Q lcl|Aclame:pro 199 YENGAHAGYIMYVT--DAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAAD 276 (344) Q Consensus 199 f~ng~~p~gil~~~--~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~ 276 (344) .+..+.|-.+++-. +...++++...+++.-.-.. ..+...+.. ..+-+++.++.......+....+.-.+. T Consensus 225 ~~~~~~~~~v~~g~~~~~~~~~e~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~lt~~~~~~~~~~~~~~l~~~ 297 (440) T protein:vir:95 225 MSDLNDAMLLVKGDLDGIKLSPEDAAKMKDANMLFL----KTGISTTGQ---QTTADASYIYKQYDVNGTEAYKNRLAND 297 (440) T ss_pred HHHhhcceeeeecccccCCCCccchhhhhhccceec----ccccccccC---CCCcceeEEeecCCHHHHHHHHHHHHHH Confidence 44555565555421 12234444444433221110 000011110 1122233333334455567777788899 Q ss_pred HHHHhcCCHHHhccccccccccccHHHHH----------HHHHHHHHHHHHHHHHHHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 277 LLDAHRIPFQLMGGKPENVGSLGDIEKVA----------KVFVRNELIPLQDRIREINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 277 Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~----------~~f~~~~l~P~~~~ieeln~~L~~~~~~f~~y~l~~~~~ 344 (344) |...-++|..-.+...+ +.++--++... ...+...+.-.++.+.++-.......+.....++.|.+. T Consensus 298 i~~~s~~p~~~~~~~~~-n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~v~i~f~~~ 374 (440) T protein:vir:95 298 IHRFSRIPNLDDDRFNS-TSSGIALLYKMIGLEQVRKDKETYFTKALRRRYELISNIHKAINGPVIEANKLTFTFHPN 374 (440) T ss_pred HHHHhCCcccccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccceEEeCCC Confidence 99999999755433211 11111111110 111222222222222211111111111222234555555 No 154 >protein:vir:4223 Length: 486 # NCBI annotation: predicted 53.7Kd protein # Family: family:all:524 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039678;swissprot:sw:q05220;genbank:gi:9625444;uniprot:Q05220;genbank:GeneID:2942930;interpro:IPR010859 Probab=75.62 E-value=0.14 Score=25.19 Aligned_cols=294 Identities=12% Similarity=0.074 Sum_probs=101.2 Q ss_pred CCCCCCC-CCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGK-TLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVK 79 (344) Q Consensus 1 msk~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~ 79 (344) .-|.+-+ .....+.... .. ..+...+ --+|... .+..+-..+. .......+. .++ T Consensus 40 ~G~~~i~~~~~~~~~~~~----~~--------~~v~n~~--~~iVd~~-~~~l~~~g~~---~~~~~~~~~----~~~-- 95 (486) T protein:vir:42 40 DAERRPEAIGVTVPREMQ----QL--------LAHVGYP--RLYVDSV-AERQAVEGFR---LGDADEADE----ELW-- 95 (486) T ss_pred cccCcchhcccccchhHh----hh--------hhccchH--HHHHHHH-Hhhhccccee---cCCCchhHH----HHH-- Confidence 1111100 0000000000 00 0000000 0011100 0000000000 000000000 000 Q ss_pred hhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCc-------eEEEEEecCcceeccccCce--------EE Q lcl|Aclame:pro 80 RNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGK-------VIRLETSPAKYTRRGVEEDV--------YW 144 (344) Q Consensus 80 ~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~-------~~~L~pl~~~~v~~~~~~~~--------~y 144 (344) . ...-|.+ .....++..+.+.+|.||+.+.++..|. ...+.+++|..+.+..+... +| T Consensus 96 --~---i~~~N~~--d~~~~~~~~~a~~~G~ay~~v~~~e~~~~~~~~~~~~~i~~~~p~~~~~i~d~~~~~~~~~~~~~ 168 (486) T protein:vir:42 96 --Q---WWQANNL--DIEAPLGYTDAYVHGRSFITISKPDPQLDLGWDQNVPIIRVEPPTRMHAEIDPRINRVSKAIRVA 168 (486) T ss_pred --H---HHHhcCh--hHHHHHHHHHHhhcCceEEEEecCCcccccccCCCeeEEEEecccceEEEEeCCCCCeEEEEEEE Confidence 0 0111222 1224456778999999999998875332 23566677765543322110 11 Q ss_pred EEcCCceE---EEEecc-------------------------cEEEecCCCCCCCccccccch----hhHHHHHHHHHHH Q lcl|Aclame:pro 145 WVPSFNEP---TAFAPG-------------------------SVFHLLEPDINQELYGLPEYL----SALNSAWLNESAT 192 (344) Q Consensus 145 ~~~~~~~~---~~~~~~-------------------------eViH~r~~~~~~~~~G~sp~~----~~~~~i~~~~aa~ 192 (344) ....++.. ..+.++ -|++|++..-..+.+|.|-+. .+.+.+.....-. T Consensus 169 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~~~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~ 248 (486) T protein:vir:42 169 YDKEGNEIQAATLYTPMETIGWFRADGEWAEWFNVPHGLGVVPVVPLPNRTRLSDLYGTSEITPELRSMTDAAARILMLM 248 (486) T ss_pred EecCCCeEEEEEEEcCCcEEEEEecCCcEEeecceecCCCCceEEEeccccccCCCCCcccchhhHHHHHHHHHHHHHHH Confidence 11111110 011111 245555332234567777654 2333333332222 Q ss_pred HHHHHHHHhcCCCceEEEeCCCCCCHHHHH--HHHHHHHHhhccccccccccccCCCccccceeeecccchhHHH-HHHH Q lcl|Aclame:pro 193 LFRRKYYENGAHAGYIMYVTDAVQDRNDIE--MLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDD-FFNI 269 (344) Q Consensus 193 ~~~~~~f~ng~~p~gil~~~~~~l~~e~~~--~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q-~~e~ 269 (344) .-...| .+.|--+|. +..+.+...+ .-...|+. ..++++++.. ++.++..+... +++ +++. T Consensus 249 ~~~~e~---~a~p~~~i~--G~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~----~~~~~~q~~~~--~~e~~~~~ 312 (486) T protein:vir:42 249 QATAEL---MGVPQRLIF--GIKPEEIGVDSETGQTLFDA-----YLARILAFED----AEGKIQQFSAA--ELANFTNA 312 (486) T ss_pred HHHHHh---hcchHHHhh--cCCccccccccccccchhhh-----hhchhcccCC----CCceEEeeccc--CHHHHHHH Confidence 222223 333433332 3211111111 11112221 1234444432 23445444332 333 8888 Q ss_pred HhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHH----------HHHHHHHHHHHHHHHHHHhhCCcceecccc-- Q lcl|Aclame:pro 270 KKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKV----------FVRNELIPLQDRIREINGWLGQEVIRFKNY-- 337 (344) Q Consensus 270 ~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~----------f~~~~l~P~~~~ieeln~~L~~~~~~f~~y-- 337 (344) .+....+++..=++|++.+|....+.+++.-++..... .+...|.-+++.+.. .++...+.++.+ T Consensus 313 l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~---~~~~~~~~~d~~~i 389 (486) T protein:vir:42 313 LDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNLMFGGAWEEAMRIAYR---IMKGGDVPPDMLRM 389 (486) T ss_pred HHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCccccceee Confidence 88888889999999999998653322222222211111 111122222211111 112111111111 Q ss_pred ccCCCCC Q lcl|Aclame:pro 338 SLDTDNG 344 (344) Q Consensus 338 ~l~~~~~ 344 (344) ++.|.+. T Consensus 390 ~v~w~~~ 396 (486) T protein:vir:42 390 ETVWRDP 396 (486) T ss_pred eEEecCC Confidence 2233333 No 155 >protein:vir:103219 Length: 201 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277473;genbank:gi:71834115;genbank:GeneID:3562330 Probab=73.99 E-value=0.1 Score=26.00 Aligned_cols=123 Identities=11% Similarity=0.103 Sum_probs=55.0 Q ss_pred EEEeCC--CCCCHHHHHHHHHHHH---HhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhc Q lcl|Aclame:pro 208 IMYVTD--AVQDRNDIEMLRENMV---KSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHR 282 (344) Q Consensus 208 il~~~~--~~l~~e~~~~lk~~~~---~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fg 282 (344) |+++++ ..++.+ ...++++++ ..+| +.+.+.+... .+.++....+.+.-+. ......+.||++-| T Consensus 1 V~k~~~l~~~~~~~-~~~~~~r~~~~~~~~~--~~~~~~ld~~---~e~~e~~~~~lsGl~d----~l~~~~~~iaa~s~ 70 (201) T protein:vir:10 1 MWKAKGLADLCDDS-DGAARLRLAQVDNNSG--VGQAIGIDAD---SEEYNVLNSDIGGIDT----FLSQKFDRIVALSG 70 (201) T ss_pred CccchHHHHHhcCC-hHHHHHHHHHHHHhhh--hhhhheeecC---CcceeeeecCcCChHH----HHHHHHHHHHhHhc Confidence 666543 112211 223444443 3332 3333434322 2445555555554333 34456688999999 Q ss_pred CCHHHhcccccccccc-ccHHHHHHHHHHH-------HHHHHHHHHHHHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 283 IPFQLMGGKPENVGSL-GDIEKVAKVFVRN-------ELIPLQDRIREINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 283 VPp~~lg~~~~~~~~~-~n~e~~~~~f~~~-------~l~P~~~~ieeln~~L~~~~~~f~~y~l~~~~~ 344 (344) ||...|=.... ++. ++-+...+.||.. .|.|.++++-++-. -...|.|+...|..=.. T Consensus 71 iP~t~LfG~sp--~Glnatge~d~~nyyd~i~~~Qe~~l~p~le~l~~~~~--~~~~~~~~f~pL~~~s~ 136 (201) T protein:vir:10 71 IHEIILKGKNV--GGVSASQNTALETFYGYVDRKRKAELLPLLEFLLPFIV--TEQEWSVEFNPLSQVSD 136 (201) T ss_pred CchhhhcCCCC--ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCceEeeCCCCCCCH Confidence 99988743322 222 2344455566543 34444443332111 12233333333332222 No 156 >protein:vir:4898 Length: 502 # NCBI annotation: gp502 # Family: family:all:125 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056676;genbank:gi:9635011;genbank:GeneID:1262662 Probab=71.91 E-value=0.19 Score=24.54 Aligned_cols=316 Identities=11% Similarity=0.012 Sum_probs=110.8 Q ss_pred CCCCCCCCCCCch--hhc---------cccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcc Q lcl|Aclame:pro 1 MSKKKGKTLQPAA--KKM---------TASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAA 69 (344) Q Consensus 1 msk~~~~~~~~~~--~~~---------~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~ 69 (344) +++.+.+....-. ... ...... .....+-..+. .....+--...+-....|+.+..-. . T Consensus 49 i~~h~~~~~~rl~~l~~yY~g~~~~i~~~~~~~--~~~~~~~ki~~---n~~k~Ivd~~~~yl~g~p~~~~~~d-----~ 118 (502) T protein:vir:48 49 INHHKLRQAPRIQELLDYARGENHDVLKSGRRK--DNEMADKRAVH---NYGRMISKFKTGYLAGNPIRVEYDD-----N 118 (502) T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccccccccc--ccccccceeec---chHHHHHHHHhhhhcccCeeEecCC-----c Confidence 1111000000000 000 000000 00000000000 1111110011111122222221000 0 Q ss_pred hhhhhhhhhhhhhHHH-hcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccC----c--- Q lcl|Aclame:pro 70 VHHSSPIYVKRNILAS-TFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEE----D--- 141 (344) Q Consensus 70 ~~~~~~i~~~~~~~~~-~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~----~--- 141 (344) ..... +. ..+. ...-|.+ ...+..++.+.+.+|.+|+.+.++.+|++ .+..++|..+.+..+. . T Consensus 119 ~~~~~-~~----~~l~~~~~~N~~--~~~~~~~~~~~~~~G~a~~~v~~dedg~~-~i~~~~p~~~~~vydd~~~~~~~~ 190 (502) T protein:vir:48 119 EDNSQ-ND----DAIKRIGRINDI--DTHNRNLIRDLSQTGRAYEVIYRSEYDET-RIKRLSPLETFVIYDNSLEDNSIA 190 (502) T ss_pred cchhH-HH----HHHHHHHhhcCH--hHHHHHHHHHHhhcCeEEEEEEeCCCCce-EEEEEcccceEEEEcCCCCCceEE Confidence 00000 00 0000 0111111 12355677789999999999999988864 4566677655433221 1 Q ss_pred --eEEEEcC--Cce--EEEEecccEEEecCCC---------------C----CCCccccccchhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 142 --VYWWVPS--FNE--PTAFAPGSVFHLLEPD---------------I----NQELYGLPEYLSALNSAWLNESATLFRR 196 (344) Q Consensus 142 --~~y~~~~--~~~--~~~~~~~eViH~r~~~---------------~----~~~~~G~sp~~~~~~~i~~~~aa~~~~~ 196 (344) +||.... ++. ...+.++.|+++.... | .+...|.|.+......+.....+..-.. T Consensus 191 ~ir~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~ 270 (502) T protein:vir:48 191 AVRYYNRGTLQNAKDVVEIYTNQHIYTLDASDSFNEISVTPHAFGTVPITEFLNNADGIGDYETELYLIDLYDSAESDTA 270 (502) T ss_pred EEEEEEEeecCCcEEEEEEEeCCeEEEEEeCCceeeccceecCCCccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHH Confidence 1222111 111 1122233332221100 0 0122477777766666655555555555 Q ss_pred HHHHhcCCCceEEEeCCCCC--CHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhH Q lcl|Aclame:pro 197 KYYENGAHAGYIMYVTDAVQ--DRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASA 274 (344) Q Consensus 197 ~~f~ng~~p~gil~~~~~~l--~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~ 274 (344) +.+.-.+.|-.++. +... .++....++.... -+...... ..+..++.+++.++....+..+....+.-. T Consensus 271 ~~~~~~~~~~lv~~--g~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~d~~~l~~~~~~~~~~~~~~~L~ 341 (502) T protein:vir:48 271 NHMSDMADAILAIY--GDLALPQGMQASDMKRTRL-----MQLKPPKS--ADGKEGTVKAEYLTKSYDVSGAEAYKTRLN 341 (502) T ss_pred HHHHHhcCceeeee--cCcccccccchhhhhhcce-----eecccccc--ccccccCcceeEeeecCCHHHHHHHHHHHH Confidence 55666666655543 3222 2222222221110 00000000 011122344444544444455666678888 Q ss_pred HHHHHHhcCCHHHhccccccccccccHHHH----------HHHHHHHHHHHHHHHHHHHHHhhCC-cceeccccccCCCC Q lcl|Aclame:pro 275 ADLLDAHRIPFQLMGGKPENVGSLGDIEKV----------AKVFVRNELIPLQDRIREINGWLGQ-EVIRFKNYSLDTDN 343 (344) Q Consensus 275 ~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~----------~~~f~~~~l~P~~~~ieeln~~L~~-~~~~f~~y~l~~~~ 343 (344) ++|+..-++|+...+... ++.++.-++-. ....+...|.-.++.+.++-...+. ..+.....++.|.+ T Consensus 342 ~~I~~~s~~p~~~~~~~~-~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~ 420 (502) T protein:vir:48 342 KDIHVFTNTPDMSDNHFS-GNASGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVNEFKDFDESRLKITFTP 420 (502) T ss_pred HHHHHHhCCCCcCccccc-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccceEEeCC Confidence 899999999976554322 11221111111 0112222222222222211111111 11111122445555 Q ss_pred C Q lcl|Aclame:pro 344 G 344 (344) Q Consensus 344 ~ 344 (344) . T Consensus 421 ~ 421 (502) T protein:vir:48 421 N 421 (502) T ss_pred C Confidence 5 No 157 >protein:vir:105889 Length: 474 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004371;genbank:gi:122891826;genbank:GeneID:4712360 Probab=71.68 E-value=0.19 Score=24.51 Aligned_cols=303 Identities=7% Similarity=-0.060 Sum_probs=105.7 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) +.++.......... ...... .-..|.--+.. .....+--...+=..-.|+.+.. ..-...+......|.. T Consensus 51 ~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~ki~~-n~~~~ivd~~~~yl~g~pv~~~~-~~~~~~~e~~~~~l~~-- 120 (474) T protein:vir:10 51 FKRRPIEEKEDFET-----GGNVRR-LDVSVNNKLNN-SFDSEIVDTRVGYLHGVPVTYDL-DENAEKNEKLKKFITN-- 120 (474) T ss_pred hcchhhhhhhhhhh-----cccccc-cccCccccccc-chHHHHHHhHhhheeccceeEee-CCCCcchHHHHHHHHH-- Confidence 11100000000000 000000 00000000000 01111100011111122222200 0000000000000000 Q ss_pred hhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc-------eEEEEcC--Cce Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED-------VYWWVPS--FNE 151 (344) Q Consensus 81 ~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~-------~~y~~~~--~~~ 151 (344) ...-|.+ ...+..+..+.+.+|.||..+.++.+|++ .+..++|..+-+..+.. ++|.... ++. T Consensus 121 -----~~~~n~~--~~~~~~~~~~~~~~G~a~~~~~~d~~~~~-~~~~i~p~~~~~v~d~~~~~~~~i~~~~~~~~~~~~ 192 (474) T protein:vir:10 121 -----FAIRNSV--DDEDSEIGKMAAICGYGARLAYIDTNGDI-RIKNIDPYNVIFVGDNILEPTYSLRYFYEKDDDNGT 192 (474) T ss_pred -----HHhhcCH--hHHHHHHHHHHhhcCeEEEEEEeCCCCee-EEEEEcccceEEEEcCCCceEEEEEEEEEeeCCCce Confidence 0011111 12345667788999999999999988864 56666666543322111 1121111 110 Q ss_pred E----EEEeccc--------------------------EEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 152 P----TAFAPGS--------------------------VFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYEN 201 (344) Q Consensus 152 ~----~~~~~~e--------------------------ViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~n 201 (344) . ..+.... |+|++. ...|.|-+......+..-..+..-..+.+.. T Consensus 193 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~ 267 (474) T protein:vir:10 193 DYVYAEFYDNAYYYVFRGEGIDALQEVGRYEHLFDYNPLFGVPN-----NKEMIGDAEKVIHLIDAYDLTMSDASSEISQ 267 (474) T ss_pred EEEEEEEEcCceEEEEeecCCCcccccccccCCCCccceEEecC-----CCCCCCchHHHHHHHHHHHHHHHHHHHHHHH Confidence 0 0111222 233332 1235565555444444333333333333444 Q ss_pred cCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHh Q lcl|Aclame:pro 202 GAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAH 281 (344) Q Consensus 202 g~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~f 281 (344) .+.|-.+ +++..++++....++ ..+.+.+.+.++ +++| +.....+..+.+..+.-.+.|...- T Consensus 268 ~~~~~l~--i~g~~~~~~~~~~~~----------~~~~i~~~~~~~---~~~~--l~~~~~~~~~~~~~~~l~~~I~~~s 330 (474) T protein:vir:10 268 TRLAYLV--LRGMGMSEEMIQETQ----------KSGAFELFDKDM---DVKY--LTKDVNDTMIENHLDRIEKNIMRFA 330 (474) T ss_pred hhcchhh--hccCCCCchhhhhhh----------hcceeEecCCCC---ceeE--EeccCCHHHHHHHHHHHHHHHHHHh Confidence 4445434 455555554433222 123444444332 3333 3333345557777778889999999 Q ss_pred cCCHHHhccccccccccccHHHHH----------HHHHHHHHHHHHHHHHHHHHhhCCcce--eccccccCCCCC Q lcl|Aclame:pro 282 RIPFQLMGGKPENVGSLGDIEKVA----------KVFVRNELIPLQDRIREINGWLGQEVI--RFKNYSLDTDNG 344 (344) Q Consensus 282 gVPp~~lg~~~~~~~~~~n~e~~~----------~~f~~~~l~P~~~~ieeln~~L~~~~~--~f~~y~l~~~~~ 344 (344) ++|..-.+... ++.++..++-.. ...+...|.-.++.+..+-...+.... ....-++.|.+. T Consensus 331 ~~p~~~~~~~~-~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~~~~~~~~~~~i~~~f~~~ 404 (474) T protein:vir:10 331 KSVNFNSDEFN-GNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKGYNLDDDSYLNLIFKFTRN 404 (474) T ss_pred CCccccccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccccceEEeCCC Confidence 99975543221 122211111111 112222222222222211111111111 111223445544 No 158 >protein:vir:94101 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240229;genbank:gi:66395892;genbank:GeneID:5133270 Probab=71.68 E-value=0.19 Score=24.51 Aligned_cols=303 Identities=7% Similarity=-0.060 Sum_probs=105.7 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) +.++.......... ...... .-..|.--+.. .....+--...+=..-.|+.+.. ..-...+......|.. T Consensus 51 ~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~ki~~-n~~~~ivd~~~~yl~g~pv~~~~-~~~~~~~e~~~~~l~~-- 120 (474) T protein:vir:94 51 FKRRPIEEKEDFET-----GGNVRR-LDVSVNNKLNN-SFDSEIVDTRVGYLHGVPVTYDL-DENAEKNEKLKKFITN-- 120 (474) T ss_pred hcchhhhhhhhhhh-----cccccc-cccCccccccc-chHHHHHHhHhhheeccceeEee-CCCCcchHHHHHHHHH-- Confidence 11100000000000 000000 00000000000 01111100011111122222200 0000000000000000 Q ss_pred hhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc-------eEEEEcC--Cce Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED-------VYWWVPS--FNE 151 (344) Q Consensus 81 ~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~-------~~y~~~~--~~~ 151 (344) ...-|.+ ...+..+..+.+.+|.||..+.++.+|++ .+..++|..+-+..+.. ++|.... ++. T Consensus 121 -----~~~~n~~--~~~~~~~~~~~~~~G~a~~~~~~d~~~~~-~~~~i~p~~~~~v~d~~~~~~~~i~~~~~~~~~~~~ 192 (474) T protein:vir:94 121 -----FAIRNSV--DDEDSEIGKMAAICGYGARLAYIDTNGDI-RIKNIDPYNVIFVGDNILEPTYSLRYFYEKDDDNGT 192 (474) T ss_pred -----HHhhcCH--hHHHHHHHHHHhhcCeEEEEEEeCCCCee-EEEEEcccceEEEEcCCCceEEEEEEEEEeeCCCce Confidence 0011111 12345667788999999999999988864 56666666543322111 1121111 110 Q ss_pred E----EEEeccc--------------------------EEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 152 P----TAFAPGS--------------------------VFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYEN 201 (344) Q Consensus 152 ~----~~~~~~e--------------------------ViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~n 201 (344) . ..+.... |+|++. ...|.|-+......+..-..+..-..+.+.. T Consensus 193 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~ 267 (474) T protein:vir:94 193 DYVYAEFYDNAYYYVFRGEGIDALQEVGRYEHLFDYNPLFGVPN-----NKEMIGDAEKVIHLIDAYDLTMSDASSEISQ 267 (474) T ss_pred EEEEEEEEcCceEEEEeecCCCcccccccccCCCCccceEEecC-----CCCCCCchHHHHHHHHHHHHHHHHHHHHHHH Confidence 0 0111222 233332 1235565555444444333333333333444 Q ss_pred cCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHh Q lcl|Aclame:pro 202 GAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAH 281 (344) Q Consensus 202 g~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~f 281 (344) .+.|-.+ +++..++++....++ ..+.+.+.+.++ +++| +.....+..+.+..+.-.+.|...- T Consensus 268 ~~~~~l~--i~g~~~~~~~~~~~~----------~~~~i~~~~~~~---~~~~--l~~~~~~~~~~~~~~~l~~~I~~~s 330 (474) T protein:vir:94 268 TRLAYLV--LRGMGMSEEMIQETQ----------KSGAFELFDKDM---DVKY--LTKDVNDTMIENHLDRIEKNIMRFA 330 (474) T ss_pred hhcchhh--hccCCCCchhhhhhh----------hcceeEecCCCC---ceeE--EeccCCHHHHHHHHHHHHHHHHHHh Confidence 4445434 455555554433222 123444444332 3333 3333345557777778889999999 Q ss_pred cCCHHHhccccccccccccHHHHH----------HHHHHHHHHHHHHHHHHHHHhhCCcce--eccccccCCCCC Q lcl|Aclame:pro 282 RIPFQLMGGKPENVGSLGDIEKVA----------KVFVRNELIPLQDRIREINGWLGQEVI--RFKNYSLDTDNG 344 (344) Q Consensus 282 gVPp~~lg~~~~~~~~~~n~e~~~----------~~f~~~~l~P~~~~ieeln~~L~~~~~--~f~~y~l~~~~~ 344 (344) ++|..-.+... ++.++..++-.. ...+...|.-.++.+..+-...+.... ....-++.|.+. T Consensus 331 ~~p~~~~~~~~-~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~~~~~~~~~~~i~~~f~~~ 404 (474) T protein:vir:94 331 KSVNFNSDEFN-GNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKGYNLDDDSYLNLIFKFTRN 404 (474) T ss_pred CCccccccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccccceEEeCCC Confidence 99975543221 122211111111 112222222222222211111111111 111223445544 No 159 >protein:vir:3609 Length: 452 # NCBI annotation: ORF32 # Family: family:all:125 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112695;genbank:gi:13786563;genbank:GeneID:921063 Probab=70.68 E-value=0.21 Score=24.35 Aligned_cols=286 Identities=8% Similarity=0.012 Sum_probs=105.3 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) ..+|+.+....+... +.. .+...+--...+-..-.|+.+..- +. .. T Consensus 49 i~~~~~~~~~~~~~k-------------------i~~-n~~~~ivd~~~~~l~g~~~~~~~~------d~--------~~ 94 (452) T protein:vir:36 49 IDDEPAKDSWKPDNR-------------------LAV-NFTKYIVDTFTGYFNGIPVKKSHS------DK--------EI 94 (452) T ss_pred cccCccccccCccce-------------------eec-chHHHHHHHHhhhhcccCceeecC------Ch--------hH Confidence 111111100000000 000 000100000001111112111000 00 00 Q ss_pred hhHHHh-cccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc----e----EEEEcCCce Q lcl|Aclame:pro 81 NILAST-FIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED----V----YWWVPSFNE 151 (344) Q Consensus 81 ~~~~~~-~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~----~----~y~~~~~~~ 151 (344) +..+.. ..-|.+ ...+..+..+.+.+|.+|..+.++.+|++ .+..++|..+.+..+.. . +|+....+. T Consensus 95 ~~~l~~~~~~n~~--~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~v~d~~~~~~~~~~i~~~~~~~~~ 171 (452) T protein:vir:36 95 LTKLQEFDNLNDM--EDEESELAKMACIYGRAFEFLYQDEDTQT-NVVYNSPENMFMVYDDTVKQEPLFAVRYGVDEDKK 171 (452) T ss_pred HHHHHHHHhhcCh--hHHHHHHHHHHHhcCeEEEEEEecCCCee-EEEEEcccceEEEEcCCCCCceEEEEEEEEecCce Confidence 000000 011111 12345567788999999999999988875 45666666554322111 0 111111111 Q ss_pred -E-EEEecccE-------------------------EEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 152 -P-TAFAPGSV-------------------------FHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAH 204 (344) Q Consensus 152 -~-~~~~~~eV-------------------------iH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~ 204 (344) . ..+.++.| ++++. .-.|.|-+......+.....+..-..+.+...+. T Consensus 172 ~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----~~~g~sd~e~v~~liDa~d~~~s~~~~~~~~~~~ 246 (452) T protein:vir:36 172 LQGEVYTLLETIKISGENDEISFGEGTYNPYPDLPVVEFYF-----NEERMSIFESVISLVNAFNKAISEKANDVDYFSD 246 (452) T ss_pred EEEEEEecCeEEEEEEcCCceEEecceeccCCcccEEEecC-----CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcC Confidence 0 11222222 23321 1235555554443333333333333333445555 Q ss_pred CceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCC Q lcl|Aclame:pro 205 AGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIP 284 (344) Q Consensus 205 p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVP 284 (344) |-.++ ++..++++....++. .+++.+..++...+.++.-+.....+..+.+..+...+.|...-++| T Consensus 247 p~~~~--~g~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p 313 (452) T protein:vir:36 247 QYLTF--LGAAVEEEDLKNIRS-----------NRVINYYADGEGKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMVA 313 (452) T ss_pred ceeEe--ecCCcCchhhhhhhh-----------cceEEecCCCCccCCcceeEeecCCHHHHHHHHHHHHHHHHHHhCcc Confidence 64444 565555544333221 12233333333333334444444445667777788889999999998 Q ss_pred HHHhccccccccccccHHHH----------HHHHHHHHHHHHHHHHHHHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 285 FQLMGGKPENVGSLGDIEKV----------AKVFVRNELIPLQDRIREINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 285 p~~lg~~~~~~~~~~n~e~~----------~~~f~~~~l~P~~~~ieeln~~L~~~~~~f~~y~l~~~~~ 344 (344) ..-.+- .++.++.-++.. ....+...|...++.+.++....+.. ..+..-++.|.+. T Consensus 314 ~~~~~~--~gn~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~-~~~~~i~i~f~~~ 380 (452) T protein:vir:36 314 NISDES--FGSSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLFCELSTNVSNK-DSWKDIEYTFTRN 380 (452) T ss_pred ccCccc--ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-cccccceEEeCCC Confidence 532221 111211111110 11222333333333333322222211 1111112334444 No 160 >protein:vir:94709 Length: 522 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338118;genbank:gi:77118196;genbank:GeneID:3707732 Probab=70.57 E-value=0.21 Score=24.33 Aligned_cols=319 Identities=11% Similarity=0.034 Sum_probs=127.4 Q ss_pred CCCCCCCCCCCchhh------------------ccccccceEEEEcCCcccc---ccchhHHHHhhhhhcCcc--eeccc Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKK------------------MTASAPKMEAFTFGEPVPV---LDRRDILDYVECISNGRW--YEPPI 57 (344) Q Consensus 1 msk~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~p~~~---~~~~~v~~~~~~~~~~~~--~~~p~ 57 (344) |++|-.-..+...+. ...+.|....+.-++.... .-.++=..|+...+++.. ..|.- T Consensus 1 ~~~~~~~~~~~~~~r~~~l~~~R~~~e~~w~e~~~y~lP~~~~~~~~~~~~~~~~~~dst~~~a~~~Las~l~~~ltP~~ 80 (522) T protein:vir:94 1 MAEREGFAAEGAKAVYDRLKNGRQPYETRAQNCAAVTIPSLFPKESDNSSTEYTTPWQAVGARCLNNLAAKLMLALFPQS 80 (522) T ss_pred CcccchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCcccccccccccccHHHHHHHHHHHHHhhcCCCC Confidence 766544322221110 0111111110000000000 011222344443332211 12211 Q ss_pred cHHHHHHH--h----hcchhhhhhh--h-hhhhhHHH--hcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceE-- Q lcl|Aclame:pro 58 SFTGLAKS--L----RAAVHHSSPI--Y-VKRNILAS--TFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVI-- 124 (344) Q Consensus 58 ~~~~l~~~--~----~~~~~~~~~i--~-~~~~~~~~--~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~-- 124 (344) .+.++.-. . .........+ + .+....+. ....| -+....++..++..+||+.+++..+..|.+. T Consensus 81 ~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~sn---f~~~~~~~~~~L~~~G~a~l~~~~~~~~~~~~~ 157 (522) T protein:vir:94 81 PWMRLTVSEYEAKTLSQDSEAAARVDEGLAMVERVLMAYMETNS---FRVPLFEALKQLIVSGNCLLYIPEPEQGTYSPM 157 (522) T ss_pred cccccccchhhhhccCcccchhHHHHHHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhhCcEeEeeeccCCCceeeE Confidence 12222100 0 0000000000 0 00111111 11111 1223344566888899999999877766554 Q ss_pred EEEEecCcceeccccCce----------------------------------EEE-E-cCCceEEE-------------- Q lcl|Aclame:pro 125 RLETSPAKYTRRGVEEDV----------------------------------YWW-V-PSFNEPTA-------------- 154 (344) Q Consensus 125 ~L~pl~~~~v~~~~~~~~----------------------------------~y~-~-~~~~~~~~-------------- 154 (344) ..+||..-++.....+.. +|. + +.++.... T Consensus 158 ~~~pl~~y~v~~d~~G~vd~i~r~~~~~~~~l~~~~~~~~~~~~~~p~~~v~v~~~v~~~~~~~~~~~~~~g~~~~~~~~ 237 (522) T protein:vir:94 158 RMYRLVSYVVQRDAFGNILQIVTIDKVAFSALPEDVKSQLNADDYEPDTELEVYTHIYRQDDEYLRYEEVEGIEVTGTDG 237 (522) T ss_pred EEEEcceEEEeeCCCcCeEEEeeeeeccHHhcchHHHHHHhcccCCccceEEEEEEEEeeCCceeEEeeccCceecccCC Confidence 566765533332211110 111 0 01111100 Q ss_pred ---EecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHh Q lcl|Aclame:pro 155 ---FAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKS 231 (344) Q Consensus 155 ---~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~ 231 (344) |..--.+..|-.-..+..||.||..-+...+...+...+-....-.-...|..++. +++.+..+.. . T Consensus 238 ~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~~v~-~~g~~~~~~~---------~ 307 (522) T protein:vir:94 238 SYPLTACPYIPVRMVRLDGEDYGRSYCEEYLGDLNSLETITEAITKMAKVASKVVGLVN-PNGITQPRRL---------N 307 (522) T ss_pred CCccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeec-ccccccchhe---------e Confidence 01111233332223456899999999999999888888888888888888886664 4444443221 1 Q ss_pred hccccccccccccCCCccccceeeecccchhHHH-HHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHH--HHH Q lcl|Aclame:pro 232 KGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDD-FFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVA--KVF 308 (344) Q Consensus 232 ~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q-~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~--~~f 308 (344) .|+.+ .++.+ ..+.+...|+...+ |.+ -.+.-+..+..|-++|-+. .++.......| +++.. ..= T Consensus 308 ~~~~g---~~v~g---~~~~v~~~~~~~~~-~~~~~~~~i~~~~~rI~~af~~~--~~~~~~~~r~T---AtEV~~r~~E 375 (522) T protein:vir:94 308 KAATG---EFVAG---RVEDINFLQLTKGQ-DFTIAKSVADAIEQRLGWAFLLN--SAVQRNAERVT---AEEIRYVAGE 375 (522) T ss_pred ccCCc---eeecC---Ccccceeeeccccc-chhHHHHHHHHHHHHHHHHHhhh--hhccCCCcccc---HHHHHHHHHH Confidence 11111 11211 12345555554322 333 2344455567788899665 23322222222 23322 222 Q ss_pred HHHHHHHHHHHHH-HHH-----HhhCC----ccee---ccccccCCCCC Q lcl|Aclame:pro 309 VRNELIPLQDRIR-EIN-----GWLGQ----EVIR---FKNYSLDTDNG 344 (344) Q Consensus 309 ~~~~l~P~~~~ie-eln-----~~L~~----~~~~---f~~y~l~~~~~ 344 (344) ....|.|...+++ |+- +-++. ..+- -...++++.-+ T Consensus 376 ~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~v~v~~~s~ 424 (522) T protein:vir:94 376 LEATLGGVYSVQSQELQLPIVRVLMNQLQSAGMIPDLPKEAVEPTVSTG 424 (522) T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccEEeeEecH Confidence 3455677776665 322 11110 0000 01122233333 No 161 >protein:vir:9306 Length: 511 # NCBI annotation: phi Mu50B-like protein # Family: family:all:125 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803284;genbank:gi:29028594;genbank:GeneID:1258040 Probab=68.39 E-value=0.24 Score=24.00 Aligned_cols=302 Identities=12% Similarity=0.019 Sum_probs=110.7 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) +.+++.++..-. + +-..++. ....+--...+-..-.|+.+.. . +.. . T Consensus 74 l~~~~~~~~~~~--------~--------~~ki~~n---~~k~Iv~~~~~yl~g~p~~~~~-~-----d~~--------~ 120 (511) T protein:vir:93 74 LVELTRRKEEYM--------A--------DNRVAHD---YASYISDFINGYFLGNPIQYQD-D-----DKD--------V 120 (511) T ss_pred ccccCcCccccc--------C--------cceeecc---hHHHHHHHHhhhhcccCeeecc-C-----ChH--------H Confidence 111111100000 0 0000010 1111100011111122322210 0 000 0 Q ss_pred hhHHH-hcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccC----c-----eEEEEc--C Q lcl|Aclame:pro 81 NILAS-TFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEE----D-----VYWWVP--S 148 (344) Q Consensus 81 ~~~~~-~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~----~-----~~y~~~--~ 148 (344) ...+. ...-|.+ ...+..+..+.+.+|.||..+.++.+|++ .+..++|..+.+..+. . +||... . T Consensus 121 ~~~l~~~~~~n~~--~~~~~~~~~~~~~~G~ay~~vy~de~~~~-~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~~ 197 (511) T protein:vir:93 121 LEVIEAFNDLNDV--ESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPID 197 (511) T ss_pred HHHHHHHHhhcCH--hHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEEeeecc Confidence 00000 0011111 12345667788999999999999988865 4667777766543221 1 122221 0 Q ss_pred C---ce---EEEEecccEEEecCCCC-------------------------CCCccccccchhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 149 F---NE---PTAFAPGSVFHLLEPDI-------------------------NQELYGLPEYLSALNSAWLNESATLFRRK 197 (344) Q Consensus 149 ~---~~---~~~~~~~eViH~r~~~~-------------------------~~~~~G~sp~~~~~~~i~~~~aa~~~~~~ 197 (344) + +. ...+.++.|.+++.... .+.-.|.|-+......+.....+..-..+ T Consensus 198 ~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~gd~e~v~~liDa~d~~~S~~~~ 277 (511) T protein:vir:93 198 KTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTAN 277 (511) T ss_pred ccccceEEEEEEEeCCcEEEEEecCCCccccccccccccccCCCccceEEecCCCCCCCchhhHHHHHHHHHHHHHHHHH Confidence 0 00 11234444444321110 01123566666555555544444433444 Q ss_pred HHHhcCCCceEEEeCCC-CCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHH Q lcl|Aclame:pro 198 YYENGAHAGYIMYVTDA-VQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAAD 276 (344) Q Consensus 198 ~f~ng~~p~gil~~~~~-~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~ 276 (344) .+...+.|-.++. +. ..+.++....++...-. ... ............++.+++.++.......+....+.-.+. T Consensus 278 ~~~~~~~~~lv~~--G~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~ 352 (511) T protein:vir:93 278 YMSDLNDAMLLIK--GNLNLDPVEVRKQKEANVLF-LEP--TVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSD 352 (511) T ss_pred HHHHhhCcceeee--cCcccCchhhccccccccee-ccc--ccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHH Confidence 4555555644543 32 22333322222111000 000 000000000112344455555444555677777788899 Q ss_pred HHHHhcCCHHHhccccccccccccHHHH----------HHHHHHHHHHHHHHHHHHHHHhhCCcce--eccccccCCCCC Q lcl|Aclame:pro 277 LLDAHRIPFQLMGGKPENVGSLGDIEKV----------AKVFVRNELIPLQDRIREINGWLGQEVI--RFKNYSLDTDNG 344 (344) Q Consensus 277 Ia~~fgVPp~~lg~~~~~~~~~~n~e~~----------~~~f~~~~l~P~~~~ieeln~~L~~~~~--~f~~y~l~~~~~ 344 (344) |...-++|..-.+... ++.++-.++-. ....+...|.-.++.+.++-...+.... .+..-++.|.+. T Consensus 353 I~~~s~~P~~~~~~~~-~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~l~~~~~~~~~~d~~~i~~~f~~~ 431 (511) T protein:vir:93 353 IHMFTNTPNMKDDNFS-GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWSIDANKDFNTVRYVYNRN 431 (511) T ss_pred HHHHhCCccccccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccccceEEeCCC Confidence 9999999976543222 11211111111 1111222222222222211111111101 111224445554 No 162 >protein:vir:96494 Length: 501 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238488;genbank:gi:66391764;genbank:GeneID:5176916 Probab=65.52 E-value=0.28 Score=23.60 Aligned_cols=303 Identities=12% Similarity=-0.000 Sum_probs=107.9 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) .-|.+......... ....+.- ..+.. ....+--...+-....|+.+..-. ..... .+... T Consensus 67 ~g~~~~i~~~~~~~--~~~~~~~--------ri~~n---~~k~Ivd~~~~yl~g~p~~~~~~~-----~~~~~-~~~~~- 126 (501) T protein:vir:96 67 RGENHDVLKSGRRK--DNEMADK--------RAVHN---YGRMISKFKTGYLAGNPIRVEYDD-----NDDNS-QNDDA- 126 (501) T ss_pred cCCCCcccCccccC--ccccccc--------eeecc---hHHHHHHHHhhhhcccCeeEeeCC-----ccchh-HHHHH- Confidence 11110000000000 0000000 00000 011110001111111222220000 00000 00000 Q ss_pred hhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---------eEEEEcC--C Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPS--F 149 (344) Q Consensus 81 ~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---------~~y~~~~--~ 149 (344) +--...-|.+ ...+..+..+.+.+|.+|+.+.++.+|.+ .+..++|..+.+..+.. .+|.... + T Consensus 127 --l~~~~~~n~~--~~~~~~~~~~~~~~G~a~~~v~~dedg~~-~i~~~~p~~~~~v~d~~~~~~~~~~v~~~~~~~~~~ 201 (501) T protein:vir:96 127 --IKRIGRINDL--DSLNRTLIRDLSQTGRAYEVIYRSEYDET-RIKRLSPLETFVIYDNSLEDNSIAAVRYYNRGTLQS 201 (501) T ss_pred --HHHHHHhcCH--HHHHHHHHHHHhhcCeEEEEEEEcCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEEeecCCC Confidence 0000111111 12355677789999999999999988865 46667776654432211 1222111 1 Q ss_pred ce-E-EEEeccc------------------------EEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 150 NE-P-TAFAPGS------------------------VFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGA 203 (344) Q Consensus 150 ~~-~-~~~~~~e------------------------ViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~ 203 (344) +. . ..+.++. |++++. ...|.|.+......+.....+..-..+.+...+ T Consensus 202 ~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----n~~g~sd~e~v~~liDa~d~~~s~~~~~~~~~~ 276 (501) T protein:vir:96 202 AKDVVEIYTDEHIYTLDASDDFNEISVTTHAFGTVPITEYLN-----NIDGIGDYETELYLIDLYDSAESDTANHMSDMA 276 (501) T ss_pred cEEEEEEEcCCcEEEEeeCCCceeccccccCCCccceEEecC-----CccCCCchhhhHHHHHHHHHHHHHHHHHHHHhc Confidence 10 0 1122222 333321 124777776665555544444444444555555 Q ss_pred CCceEEEeCCCCCCH--HHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHh Q lcl|Aclame:pro 204 HAGYIMYVTDAVQDR--NDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAH 281 (344) Q Consensus 204 ~p~gil~~~~~~l~~--e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~f 281 (344) .|-.++. +....+ +....++. .. .-+........ +...+.+++-++....+..+.+..+.-++.|...- T Consensus 277 ~~~l~i~--G~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s 347 (501) T protein:vir:96 277 DAILAIY--GDLALPKGMQASDMKR----TR-LMQLKPPKSAD--GKEGTVKAEYLTKSYDVSGAEAYKTRLNRDIHIFT 347 (501) T ss_pred Cceeeee--cccccCcccchhhhhh----cC-eeeeccccccc--ccccCcceeeEeccCCHHHHHHHHHHHHHHHHHHh Confidence 6654543 322221 11111211 10 00111111111 11233344444444455567777777889999999 Q ss_pred cCCHHHhccccccccccccHHHHH----------HHHHHHHHHHHHHHHHHHHHhhCCcceecc--ccccCCCCC Q lcl|Aclame:pro 282 RIPFQLMGGKPENVGSLGDIEKVA----------KVFVRNELIPLQDRIREINGWLGQEVIRFK--NYSLDTDNG 344 (344) Q Consensus 282 gVPp~~lg~~~~~~~~~~n~e~~~----------~~f~~~~l~P~~~~ieeln~~L~~~~~~f~--~y~l~~~~~ 344 (344) ++|..-.+... ++.++.-++... ...+...|.-.++.+..+-...+ +...++ .-++.|.+. T Consensus 348 ~~p~~~~~~~~-~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~-~~~~~d~~~i~i~f~~~ 420 (501) T protein:vir:96 348 NTPDMSDTNFS-GNTSGEALKYKLFGLDQDRVDTQSQFTKGLKRRYRLAARIGSLVN-EFKDFDESLLKITFTPN 420 (501) T ss_pred CCcccCccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccccccccceEEeCCC Confidence 99976654322 112211111110 11122222222222211111111 111111 123444444 No 163 >protein:vir:93747 Length: 472 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240454;genbank:gi:66396119;genbank:GeneID:5133516 Probab=64.80 E-value=0.29 Score=23.50 Aligned_cols=296 Identities=8% Similarity=0.024 Sum_probs=107.4 Q ss_pred CCCCCCCCCCCchhhcccccc---ceEEEEcC--Cccccccc----hhHHH-HhhhhhcCcceeccccHHHHHHHhhcch Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAP---KMEAFTFG--EPVPVLDR----RDILD-YVECISNGRWYEPPISFTGLAKSLRAAV 70 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~---~~~~~~~~--~p~~~~~~----~~v~~-~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 70 (344) +++++.+...- ...-.+.. .-....+. .+.....+ ..+.. .|.. ..+-.+-.|+.+.. .+. T Consensus 36 ~~~~~~~~~~~--~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~-~~~~l~g~~~~~~~------~d~ 106 (472) T protein:vir:93 36 HLEKLPEISIG--QEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQ-KVSYIVGKPIAFKH------TDD 106 (472) T ss_pred HHHHHHHHHHH--HHHhccccccccccchhhccccccccccccccccchHHHHHHH-HhhhhcccCeeecc------CCh Confidence 11111110000 00000000 00000000 00000000 00100 1110 01111112222100 000 Q ss_pred hhhhhhhhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc--------- Q lcl|Aclame:pro 71 HHSSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--------- 141 (344) Q Consensus 71 ~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~--------- 141 (344) . ....+-....|.+ ...+..+..+.+.+|.+|+.+..+.+|++ .+..++|..+.+..+.. T Consensus 107 ~--------~~~~l~~~~~n~~--~~~~~~~~~~~~~~G~~~~~v~~d~d~~~-~i~~~~p~~~~~i~d~~~~~~~~~~i 175 (472) T protein:vir:93 107 E--------VVKRIDEVLGNRF--DDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFI 175 (472) T ss_pred H--------HHHHHHHHHhccH--HHHHHHHHHHHhhcCeEEEEEEECCCCce-EEEEEcccceEEEEcCCCCCceEEEE Confidence 0 0001111111221 12334556788999999999999988875 46667776654432211 Q ss_pred eEEEEcCCceEEEEeccc-----------------------------------EEEecCCCCCCCccccccchhhHHHHH Q lcl|Aclame:pro 142 VYWWVPSFNEPTAFAPGS-----------------------------------VFHLLEPDINQELYGLPEYLSALNSAW 186 (344) Q Consensus 142 ~~y~~~~~~~~~~~~~~e-----------------------------------ViH~r~~~~~~~~~G~sp~~~~~~~i~ 186 (344) ++|..........+.+.. |++++. ...|.|-+......+. T Consensus 176 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~n-----n~~g~s~~e~v~~liD 250 (472) T protein:vir:93 176 RMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISDIFMYKTLID 250 (472) T ss_pred EEEEeecceeEEEEecCeEEEEEEecCeeeecccccccccccccccCCCCCcceEEecC-----CCCCCCchhhhHHHHH Confidence 111111111111111111 233321 1247777776665555 Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHH Q lcl|Aclame:pro 187 LNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDF 266 (344) Q Consensus 187 ~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~ 266 (344) ....+..-..+-+...+.|-.+++ +.. .+........+. ..+++.+..+ .++++ ++.......+ T Consensus 251 a~~~~~s~~~~~~~~~~~~~~~~~--g~~--~~~~~~~~~~~~-------~~~~~~~~~~---~~~~~--l~~~~~~~~~ 314 (472) T protein:vir:93 251 AYNRRLSDLSNTFKDSNELTYVLT--NYD--DQELPEFKRLLR-------YYGAIKVSDN---GGVDT--IQVEVPVENS 314 (472) T ss_pred HHHHHHHHHHHHHHHhcCceeEee--cCC--cccchhhHHHHh-------hccccccCCC---Cccee--EeecCCHHHH Confidence 444444444455566667755543 422 122122222221 1123333332 23344 3333456667 Q ss_pred HHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHH--------HHHH----HHHhhCCcceec Q lcl|Aclame:pro 267 FNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQD--------RIRE----INGWLGQEVIRF 334 (344) Q Consensus 267 ~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~--------~iee----ln~~L~~~~~~f 334 (344) ....+.-.+.|+..-++|..-.+... ++.+ ...+.+....+.=.+. .|++ +...++... .+ T Consensus 315 ~~~~~~l~~~i~~~s~~p~~~~~~~~-~n~S-----g~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~-~~ 387 (472) T protein:vir:93 315 KKYLDELYQKIMLFGQAVDFSSDKFG-SAPS-----GVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKG-EH 387 (472) T ss_pred HHHHHHHHHHHHHHhCCCCCCccccc-cCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-cc Confidence 77788888999999999965543221 1111 1111111111111111 1111 112223221 11 Q ss_pred cccccCCCCC Q lcl|Aclame:pro 335 KNYSLDTDNG 344 (344) Q Consensus 335 ~~y~l~~~~~ 344 (344) ...++.|.++ T Consensus 388 ~~i~v~f~~~ 397 (472) T protein:vir:93 388 KDVDISFNYN 397 (472) T ss_pred ceeeEEeCCC Confidence 2223444444 No 164 >protein:vir:2500 Length: 501 # NCBI annotation: putative portal gp5 # Family: family:all:524 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569741;genbank:gi:18496891;genbank:GeneID:932330 Probab=64.29 E-value=0.3 Score=23.43 Aligned_cols=281 Identities=9% Similarity=0.037 Sum_probs=98.4 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhh---cCcceeccccHHHHHHHhhcchhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECIS---NGRWYEPPISFTGLAKSLRAAVHHSSPIY 77 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~---~~~~~~~p~~~~~l~~~~~~~~~~~~~i~ 77 (344) .-+...+......... .... +-..+...+ --+|.... .-+.+..+ +......++ T Consensus 54 ~G~~~~~~~~~~~~~~-~~~~--------~~~~v~n~~--~~ivd~~a~~l~~~gf~~~------------d~~~~~~l~ 110 (501) T protein:vir:25 54 KGLRGRPEVPEGASDE-VKEL--------AKLSVKNVL--SLVRDSFAQNLSVVGYRNA------------LAKENDPAW 110 (501) T ss_pred hcCCCchhccccCChh-hhhh--------HhhhhcChH--HHHHHHHHhhhcccceecC------------CccchHHHH Confidence 1111100000000000 0000 000000000 00010000 00011111 000000000 Q ss_pred hhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccc-cCc---------eEEEEc Q lcl|Aclame:pro 78 VKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGV-EED---------VYWWVP 147 (344) Q Consensus 78 ~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~-~~~---------~~y~~~ 147 (344) ....-|.+ ......+..+.+.+|.||+.+.++..|. .+..++|..+.... +.. .+|... T Consensus 111 -------~i~~~N~~--d~~~~~~~~~a~i~G~ay~~v~~de~~~--~i~~~sp~~~~~iy~D~~~~~~~~~ai~~~~~~ 179 (501) T protein:vir:25 111 -------EMWQRNRM--DARQAEVHRPALTYGASYVTVTPTDEGP--VFRTRSPRQILAVYADPSVDAWPQYALETWVAQ 179 (501) T ss_pred -------HHHHhcCh--hHHHHHHHHHHhhcCceEEEEecCCCCC--eEEEeccccEEEEEecCCCCcceeEEEEEEeec Confidence 00111221 1223456778899999999999988774 34456666554221 110 011111 Q ss_pred CC------------ceEEEEecc--------------------------------------cEEEecCCCCCCCcccccc Q lcl|Aclame:pro 148 SF------------NEPTAFAPG--------------------------------------SVFHLLEPDINQELYGLPE 177 (344) Q Consensus 148 ~~------------~~~~~~~~~--------------------------------------eViH~r~~~~~~~~~G~sp 177 (344) .. ...+.+... -|+||++..-.++ .|.|. T Consensus 180 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPiv~f~N~~~~~~-~g~sd 258 (501) T protein:vir:25 180 KDAKPHRRGVLYDDTYMYELDLGEVVLGDAGGGQATQQPVNVREVTDVIEHGATFEGKPVCPVVRFVNGRDADD-MIVGE 258 (501) T ss_pred cccCcceeEEEecCeeEEEEecCceeeeeccccccccccccccccccccccccccCCccceeeEeccCccccCc-cccch Confidence 10 000111100 1444443221122 36665 Q ss_pred chhhH---HHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCcccccee Q lcl|Aclame:pro 178 YLSAL---NSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKI 254 (344) Q Consensus 178 ~~~~~---~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~ 254 (344) ++... .++.....-......|| +.|--++ .|...+ ..+. |+. ..++++++.+ ++.++ T Consensus 259 ie~v~~l~Da~~~~~s~~~~~~e~~---a~p~~~i--~G~~~~--~~~~----~~~-----~~~~i~~~~~----~~~~~ 318 (501) T protein:vir:25 259 VAPLILLQQAINSVNFDRLIVSRFG---ANPQRVI--SGWTGS--KAEV----LKA-----SALRVWTFED----PEVKA 318 (501) T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhh---ccHHHHH--hCCCCC--ccch----hhh-----cccceeccCC----CCceE Confidence 54333 33333333222333333 3343232 232222 2221 221 1234555532 23344 Q ss_pred eecccchhHHH-HHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHH-----HHHh-- Q lcl|Aclame:pro 255 IPLSEVATKDD-FFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-----INGW-- 326 (344) Q Consensus 255 ~pl~~~~~d~q-~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~iee-----ln~~-- 326 (344) ..+. ..+++ |++..+....+|++.=++|++.+|....+ .+ .....+....|.-.+.+.+. +.+. T Consensus 319 ~q~~--~~~~~~~~~~l~~~i~~i~~~s~~P~~~~~~~~~N-~S-----g~Al~~~~~~l~~ka~~k~~~f~~~l~~~~r 390 (501) T protein:vir:25 319 QAFP--PASVEPYNLILEEMLQHVAMVAQISPAQVTGKMIN-VS-----AEALAAAEANQQRKLAAKRESFGESWEQLLR 390 (501) T ss_pred EEec--ccChHHHHHHHHHHHHHHHhhcCCChhhhccccCC-hH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 4433 23444 88999999999999999999999864322 12 12222222222222211111 1110 Q ss_pred -----hCCc-ceeccccccCCCCC Q lcl|Aclame:pro 327 -----LGQE-VIRFKNYSLDTDNG 344 (344) Q Consensus 327 -----L~~~-~~~f~~y~l~~~~~ 344 (344) .+.. ...-..-++.|.+. T Consensus 391 l~~~~~~~~~~~~~~~i~v~w~~~ 414 (501) T protein:vir:25 391 LAAEMDDDPDTAADSGAEVLWRDT 414 (501) T ss_pred HHHHHhCCCccccceeeeEEecCC Confidence 1111 00000112223333 No 165 >protein:vir:95899 Length: 474 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240382;genbank:gi:66396046;genbank:GeneID:5133410 Probab=63.26 E-value=0.32 Score=23.29 Aligned_cols=292 Identities=8% Similarity=-0.019 Sum_probs=103.8 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) +..+.+........ ...+. -..+. .+...+--...+-.+-.|+.+..- +. +. T Consensus 60 ~~~~~~~~~~~~~~---~~~~~--------~ki~~---n~~k~Iv~~~~~yl~g~p~~~~~~------~~--------~~ 111 (474) T protein:vir:95 60 NYQAYKQDLHGNID---YTKPD--------WRITT---NFHQNLVDQKVSYVAGKPVTYAHD------DD--------KV 111 (474) T ss_pred ccccchhhhccccc---ccccc--------ccccc---chHHHHHHhhhhhhcccCceeccC------Ch--------HH Confidence 22111100000000 00000 00000 111111001111112233322100 00 00 Q ss_pred hhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---------eEEEEcCCce Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPSFNE 151 (344) Q Consensus 81 ~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---------~~y~~~~~~~ 151 (344) ...+.....|. -...+..++.+.+.+|.+|..+.++.+|++ .+..++|..+-+..+.. ++|....... T Consensus 112 ~~~l~~~~~n~--~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~a~ir~~~~~~~~~ 188 (474) T protein:vir:95 112 LDVIHQVLDTR--WDNKLIDILTAASNKGIDWLQVYINEDGEL-KLFRVPAEQAIPIWTDKEREQLNAFIRIFTFNGETK 188 (474) T ss_pred HHHHHHHHhcc--HHHHHHHHHHHHhhCCeEEEEeeeCCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEeecCeeE Confidence 01111111121 123345567789999999999999988865 56667776654432211 1111111111 Q ss_pred EEEEecccEEEecCCC--------------------------C----CCCccccccchhhHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 152 PTAFAPGSVFHLLEPD--------------------------I----NQELYGLPEYLSALNSAWLNESATLFRRKYYEN 201 (344) Q Consensus 152 ~~~~~~~eViH~r~~~--------------------------~----~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~n 201 (344) ...+.++.|.++..-+ | .+...|.|-+......+..-..+..-..+.+.. T Consensus 189 ~~vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~~~~d~e~v~~liDa~d~~~S~~~~~~~~ 268 (474) T protein:vir:95 189 VEYWTAETVTYYVYENGGLIPDFYYGDEHIQTHFSTGSWERVPFIAFKNNPEEVSDIWMYKSFVDAIDKRLSDVQNMFDE 268 (474) T ss_pred EEEEeCCeEEEEEEcCCceeeccccccccccCcccccCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH Confidence 1122233333321000 0 011235565555444444433333333333444 Q ss_pred cCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHh Q lcl|Aclame:pro 202 GAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAH 281 (344) Q Consensus 202 g~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~f 281 (344) .+.|-.++ ++...+ ........+ +..+++.+..+ .+++|. .....+..+.+..+.-.+.|...- T Consensus 269 ~~~p~lv~--~g~~~~--~~~~~~~~~-------~~~~~i~~~~~---~~~~~l--~~~~~~~~~~~~~~~l~~~I~~~s 332 (474) T protein:vir:95 269 SVELIYIL--RGYEGE--DLSEFMEGL-------KYYKAINVSSD---GGVETI--QVEVPVASTKEYLDMMRAYIVEFG 332 (474) T ss_pred hhcchhhh--cCCCcc--cccchhhhh-------hccceeeccCC---CceeEE--eccCCHHHHHHHHHHHHHHHHHHh Confidence 44554443 443222 111222222 12234444332 234443 333445566777777788899999 Q ss_pred cCCHHHhccccccccccccHHHH----------HHHHHHHHHHHHHHHHHHHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 282 RIPFQLMGGKPENVGSLGDIEKV----------AKVFVRNELIPLQDRIREINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 282 gVPp~~lg~~~~~~~~~~n~e~~----------~~~f~~~~l~P~~~~ieeln~~L~~~~~~f~~y~l~~~~~ 344 (344) ++|..-.+-. +++.++-.++-. ....+...|.-.++. +.+.+|.+. ....-++.|.+. T Consensus 333 ~~p~~~~~~~-~~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~---i~~~~g~~~-d~~~i~i~f~~~ 400 (474) T protein:vir:95 333 QGVDFQTDKF-GSATSGIALKFLYTNLNLKANKLKNKANVALQELMQF---ILDFNKIKL-DAKEIEITFNFN 400 (474) T ss_pred CCcCcccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCCCc-ccceeeEEecCC Confidence 9985432211 111111111100 111111122222111 222223221 111223444444 No 166 >protein:vir:96266 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240308;genbank:gi:66395972;genbank:GeneID:5133343 Probab=63.26 E-value=0.32 Score=23.29 Aligned_cols=292 Identities=8% Similarity=-0.019 Sum_probs=103.8 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) +..+.+........ ...+. -..+. .+...+--...+-.+-.|+.+..- +. +. T Consensus 60 ~~~~~~~~~~~~~~---~~~~~--------~ki~~---n~~k~Iv~~~~~yl~g~p~~~~~~------~~--------~~ 111 (474) T protein:vir:96 60 NYQAYKQDLHGNID---YTKPD--------WRITT---NFHQNLVDQKVSYVAGKPVTYAHD------DD--------KV 111 (474) T ss_pred ccccchhhhccccc---ccccc--------ccccc---chHHHHHHhhhhhhcccCceeccC------Ch--------HH Confidence 22111100000000 00000 00000 111111001111112233322100 00 00 Q ss_pred hhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---------eEEEEcCCce Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPSFNE 151 (344) Q Consensus 81 ~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---------~~y~~~~~~~ 151 (344) ...+.....|. -...+..++.+.+.+|.+|..+.++.+|++ .+..++|..+-+..+.. ++|....... T Consensus 112 ~~~l~~~~~n~--~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~a~ir~~~~~~~~~ 188 (474) T protein:vir:96 112 LDVIHQVLDTR--WDNKLIDILTAASNKGIDWLQVYINEDGEL-KLFRVPAEQAIPIWTDKEREQLNAFIRIFTFNGETK 188 (474) T ss_pred HHHHHHHHhcc--HHHHHHHHHHHHhhCCeEEEEeeeCCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEeecCeeE Confidence 01111111121 123345567789999999999999988865 56667776654432211 1111111111 Q ss_pred EEEEecccEEEecCCC--------------------------C----CCCccccccchhhHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 152 PTAFAPGSVFHLLEPD--------------------------I----NQELYGLPEYLSALNSAWLNESATLFRRKYYEN 201 (344) Q Consensus 152 ~~~~~~~eViH~r~~~--------------------------~----~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~n 201 (344) ...+.++.|.++..-+ | .+...|.|-+......+..-..+..-..+.+.. T Consensus 189 ~~vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~~~~d~e~v~~liDa~d~~~S~~~~~~~~ 268 (474) T protein:vir:96 189 VEYWTAETVTYYVYENGGLIPDFYYGDEHIQTHFSTGSWERVPFIAFKNNPEEVSDIWMYKSFVDAIDKRLSDVQNMFDE 268 (474) T ss_pred EEEEeCCeEEEEEEcCCceeeccccccccccCcccccCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH Confidence 1122233333321000 0 011235565555444444433333333333444 Q ss_pred cCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHh Q lcl|Aclame:pro 202 GAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAH 281 (344) Q Consensus 202 g~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~f 281 (344) .+.|-.++ ++...+ ........+ +..+++.+..+ .+++|. .....+..+.+..+.-.+.|...- T Consensus 269 ~~~p~lv~--~g~~~~--~~~~~~~~~-------~~~~~i~~~~~---~~~~~l--~~~~~~~~~~~~~~~l~~~I~~~s 332 (474) T protein:vir:96 269 SVELIYIL--RGYEGE--DLSEFMEGL-------KYYKAINVSSD---GGVETI--QVEVPVASTKEYLDMMRAYIVEFG 332 (474) T ss_pred hhcchhhh--cCCCcc--cccchhhhh-------hccceeeccCC---CceeEE--eccCCHHHHHHHHHHHHHHHHHHh Confidence 44554443 443222 111222222 12234444332 234443 333445566777777788899999 Q ss_pred cCCHHHhccccccccccccHHHH----------HHHHHHHHHHHHHHHHHHHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 282 RIPFQLMGGKPENVGSLGDIEKV----------AKVFVRNELIPLQDRIREINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 282 gVPp~~lg~~~~~~~~~~n~e~~----------~~~f~~~~l~P~~~~ieeln~~L~~~~~~f~~y~l~~~~~ 344 (344) ++|..-.+-. +++.++-.++-. ....+...|.-.++. +.+.+|.+. ....-++.|.+. T Consensus 333 ~~p~~~~~~~-~~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~---i~~~~g~~~-d~~~i~i~f~~~ 400 (474) T protein:vir:96 333 QGVDFQTDKF-GSATSGIALKFLYTNLNLKANKLKNKANVALQELMQF---ILDFNKIKL-DAKEIEITFNFN 400 (474) T ss_pred CCcCcccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCCCc-ccceeeEEecCC Confidence 9985432211 111111111100 111111122222111 222223221 111223444444 No 167 >protein:vir:78537 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491582;genbank:gi:157786405;genbank:GeneID:5625689 Probab=62.20 E-value=0.34 Score=23.16 Aligned_cols=295 Identities=13% Similarity=0.073 Sum_probs=101.1 Q ss_pred cCCcccccc--------chhHHHHhhhhhcCc--ceeccccH-HHHHHHhhcchhhhhhhhhhhhhHHHh--cccCCCCC Q lcl|Aclame:pro 28 FGEPVPVLD--------RRDILDYVECISNGR--WYEPPISF-TGLAKSLRAAVHHSSPIYVKRNILAST--FIPHPWLS 94 (344) Q Consensus 28 ~~~p~~~~~--------~~~v~~~~~~~~~~~--~~~~p~~~-~~l~~~~~~~~~~~~~i~~~~~~~~~~--~~pn~~~~ 94 (344) .+.+...+. ...-+..+.-...|. +-..+... ..+........+...++......+... ..+..-.. T Consensus 1 ~~t~~d~i~~L~~~~~~~~~r~~~~~~Yy~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~~~~d~~~ 80 (480) T protein:vir:78 1 MTTYHEHVERLQGLLARDLPNLLEAEAYRNGTRRLKTIGIGAPPELAYLDVQPGWVATYLRTLSDRLDIEGFRISEDSEG 80 (480) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcccccchhhhhhhhhcchHHHHHHHHHhhhccCceecCCCchh Confidence 000100000 000001111011110 00001110 000000001111111111111111000 00000000 Q ss_pred -------------HHHHHHHHHHHHhcCCeEEEEEEC------CCCceEEEEEecCcceeccccCc---------eEEEE Q lcl|Aclame:pro 95 -------------QQDFSRFVLDFLVFGNAFLEKRYS------TTGKVIRLETSPAKYTRRGVEED---------VYWWV 146 (344) Q Consensus 95 -------------~~~f~~~~~~~ll~Gnay~~i~r~------~~G~~~~L~pl~~~~v~~~~~~~---------~~y~~ 146 (344) ...+..+..+.+.+|.+|+.+.++ ..|.+ .+..++|..+.+..+.. .+|.. T Consensus 81 ~~~l~~i~~~N~~~~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~~~~-~i~~~~p~~~~~i~D~~~~~~~~~~i~~~~~ 159 (480) T protein:vir:78 81 LEELWNWWQANDLDEESVLGHDDSLTFGRAYITVSHPDVESGDPAGIP-LIRVESPLYMYAELDPRNTRRVTRAVRLYTT 159 (480) T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCceEEEeecCccccCCCCCee-EEEEEcccceEEEEcCCCccceEEEEEEEEe Confidence 011234556788999999998763 34443 46677776665433211 01111 Q ss_pred cCC-ce---EEEEeccc-----------------------------EEEecCCCCCCCccccccchh----hHHHHHHHH Q lcl|Aclame:pro 147 PSF-NE---PTAFAPGS-----------------------------VFHLLEPDINQELYGLPEYLS----ALNSAWLNE 189 (344) Q Consensus 147 ~~~-~~---~~~~~~~e-----------------------------ViH~r~~~~~~~~~G~sp~~~----~~~~i~~~~ 189 (344) ..+ +. ...+.++. |+||.+..-..+.+|.|-+.- +..++.... T Consensus 160 ~d~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~n~~~~~~~~G~sdi~~~i~~l~Da~~~~~ 239 (480) T protein:vir:78 160 RDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPVVPLTNDPRLGNRYGRSEISPELRKVTDAASRTL 239 (480) T ss_pred ecCCcceEEEEEEeCCeEEEEEecCCCcccccccccccccCCCCcceEEeecccccCCccCccchhHHHHHHHHHHHHHH Confidence 111 10 01112222 455553322344567765542 223333322 Q ss_pred HHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHH Q lcl|Aclame:pro 190 SATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNI 269 (344) Q Consensus 190 aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~ 269 (344) .-......+| +.|--++ +|..+++...+.-...|.... +.++.+.+ ++.++..+.....+ .|++. T Consensus 240 s~~~~~~~~~---a~p~~~i--~G~~~~~~~~~~~~~~~~~~~-----~~~~~~~~----~~~~~~~~~~~~~~-~~~~~ 304 (480) T protein:vir:78 240 MNLQSASQIL---GTPLRVI--SGVTTDELTNDGENTTLDIYY-----GRILTLAS----EAAKISEFKAAELR-NFAEE 304 (480) T ss_pred HHHHHHHHhh---cchhhhh--hCCCccccccccccchhhhhh-----hhhccCCC----CCceEEecCccCHH-HHHHH Confidence 2222222333 3343333 343332221111112222211 23333332 23445554433222 38888 Q ss_pred HhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHH-----HHH-------hhCCcceecc-- Q lcl|Aclame:pro 270 KKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-----ING-------WLGQEVIRFK-- 335 (344) Q Consensus 270 ~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~iee-----ln~-------~L~~~~~~f~-- 335 (344) .+..+.+|+.+=++|++.+|....+.+++ + .+.+....|.=.+.+.+. |.+ .++.+ ...+ T Consensus 305 l~~~i~~~~~~~~~p~~~fg~~~~n~~Sg---~--Al~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~~~~-~~~~~~ 378 (480) T protein:vir:78 305 MEVFRKEAASITGLPPQYLSSSSENPASA---E--AIIATDSRIVKMAERKGRIFGGAWERAMRIAMQIMGRE-VTEEYT 378 (480) T ss_pred HHHHHHHHhcccCCCHHHhccccCchhHH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-ccccce Confidence 88999999999999999998643221221 1 112222222222221111 111 11211 1111 Q ss_pred ccccCCCCC Q lcl|Aclame:pro 336 NYSLDTDNG 344 (344) Q Consensus 336 ~y~l~~~~~ 344 (344) .-++.|.+. T Consensus 379 ~i~v~w~~~ 387 (480) T protein:vir:78 379 RLETVWRDP 387 (480) T ss_pred eeeEEecCC Confidence 112233222 No 168 >protein:vir:733 Length: 453 # NCBI annotation: minor structural protein 1 # Family: family:all:125 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108710;genbank:gi:13487832;genbank:GeneID:920851 Probab=59.34 E-value=0.39 Score=22.80 Aligned_cols=297 Identities=10% Similarity=-0.025 Sum_probs=106.0 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) -.+++.+... .+... ...+ ....+--...+-..-.|+.+.. .+. .. T Consensus 49 i~~~~~~~~~---------~~~~k---i~~n--------~~~~ivd~~~~~l~g~~~~~~~------~d~--------~~ 94 (453) T protein:vir:73 49 ISSQKAKDSW---------KPDNR---LTNN--------FAKYIVDTFVGYFNGIPIKKTH------DDK--------SV 94 (453) T ss_pred hhcCCCCCcc---------Cccce---eecc--------hHHHHHHHhhhhhcccCceeec------CCh--------HH Confidence 1111111000 00000 0000 0010000000111111111100 000 00 Q ss_pred hhHHHh-cccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc--------eEEEEcCCce Q lcl|Aclame:pro 81 NILAST-FIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--------VYWWVPSFNE 151 (344) Q Consensus 81 ~~~~~~-~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~--------~~y~~~~~~~ 151 (344) +..+.. ..-|.+ ...+..+..+.+.+|.+|+.+.++.+|.+ .+..++|..+.+..+.. .+|.....+. T Consensus 95 ~~~l~~~~~~n~~--~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~v~dd~~~~~~~~~i~~~~~~~~~ 171 (453) T protein:vir:73 95 LEAMQLFDNLNDM--EDEESELAKIACVYGRAYELMYQNESTES-EVIYCSPLNVFMVYDDSIKQKPLFAVYYGFDEEGN 171 (453) T ss_pred HHHHHHHHHhcCh--hHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEEeCCCCceeEEEEEEEEecCce Confidence 000100 011111 12344566789999999999999988876 45566766553322111 0122222221 Q ss_pred E--EEEecccEEEecCCC----------------C----CCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEE Q lcl|Aclame:pro 152 P--TAFAPGSVFHLLEPD----------------I----NQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIM 209 (344) Q Consensus 152 ~--~~~~~~eViH~r~~~----------------~----~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil 209 (344) . ..+.++.|+++.... | .+.-.|.|.+......+.....+..-..+.....+.|-.++ T Consensus 172 ~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~liDa~~~~~S~~~~~~~~~~~~~l~~ 251 (453) T protein:vir:73 172 LSGTVYTLLETISITGKAGEVKFGESTYNVYSDLPIVEYNFNEERQSIFEPVHSLINSYNKVTSEKANDVEYFSDQYLVF 251 (453) T ss_pred EEEEEEeCCeEEEEEecCCceEEccceeccCCceeEEEecCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhccceeee Confidence 1 112333333322100 0 01123555565544444333333222333334445554444 Q ss_pred EeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhc Q lcl|Aclame:pro 210 YVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMG 289 (344) Q Consensus 210 ~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg 289 (344) +|..++++....++..--........+.... ...+.+++-++....+..+....+...+.|+..-++|.. + T Consensus 252 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~--~ 322 (453) T protein:vir:73 252 --LGAEVDEEDAKNIKDNRLINFFDKNSNGQGT-----NAAKVDVKFLDKPDSDVQTENLLNRLERSIFQFTMAANI--S 322 (453) T ss_pred --ecCCCCchhhhcccccccccccccccccccc-----cccCceeEEeeecCCHHHHHHHHHHHHHHHHHHhCCccc--C Confidence 4655666555554432100000011111111 122333444444445566777778888889999999853 2 Q ss_pred cccccccccccHHHH----------HHHHHHHHHHHHHHHHHHHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 290 GKPENVGSLGDIEKV----------AKVFVRNELIPLQDRIREINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 290 ~~~~~~~~~~n~e~~----------~~~f~~~~l~P~~~~ieeln~~L~~~~~~f~~y~l~~~~~ 344 (344) ....++.++..++.. ....+...|.-.++.+.++....+.. ..+..-++.|.+. T Consensus 323 ~~~~gn~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~-~~~~~i~v~f~~~ 386 (453) T protein:vir:73 323 DENFGNSSGVALAYKLQAMSNLALSFQRKFQSALNRRYSLWSSLSTNASNK-DAWKDIEYTFTRN 386 (453) T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-cccccceEEeCCC Confidence 211111111111111 11112222222222222221111111 1122223444444 No 169 >protein:vir:78805 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285356;genbank:gi:148717884;genbank:GeneID:5246936 Probab=59.02 E-value=0.4 Score=22.76 Aligned_cols=302 Identities=11% Similarity=0.020 Sum_probs=108.7 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) +.+++.+...-. + +-..+. .+...+--...+-....|+.+.. . +.. . T Consensus 74 l~~~~~~~~~~~--------~--------~~ki~~---n~~k~Iv~~~~~yl~g~p~~~~~-~-----d~~--------~ 120 (511) T protein:vir:78 74 LVELTRRKEEYM--------A--------DNRVAH---DYASYISDFINGYFLGNPIQYQD-D-----DKD--------V 120 (511) T ss_pred ccccCccccccc--------C--------cceeec---chHHHHHHHHhhhhcccCceeec-C-----chH--------H Confidence 111111000000 0 000000 11111100111111122222210 0 000 0 Q ss_pred hhHHHh-cccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---------eEEEEcC-- Q lcl|Aclame:pro 81 NILAST-FIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPS-- 148 (344) Q Consensus 81 ~~~~~~-~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---------~~y~~~~-- 148 (344) +..+.. ..-|.+ ...+..+..+.+.+|.+|..+.++.+|++ .+..++|..+.+..+.. +||.... T Consensus 121 ~~~l~~~~~~n~~--~~~~~~~~~~~~~~G~a~~~vy~d~dg~~-~i~~~~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~ 197 (511) T protein:vir:78 121 LEAIEAFNDLNDV--ESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFIIYDNTVERNSIAGVRYLRTKPID 197 (511) T ss_pred HHHHHHHHhhcCh--hHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEeeecc Confidence 000000 011111 12345567788999999999999988864 56677776665432211 1232211 Q ss_pred Cc--e----EEEEecccEEEecCCCC-------------------------CCCccccccchhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 149 FN--E----PTAFAPGSVFHLLEPDI-------------------------NQELYGLPEYLSALNSAWLNESATLFRRK 197 (344) Q Consensus 149 ~~--~----~~~~~~~eViH~r~~~~-------------------------~~~~~G~sp~~~~~~~i~~~~aa~~~~~~ 197 (344) ++ . ...+.++.|.++...+. .+.-.|.|-+......+..-..+..-..+ T Consensus 198 ~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~gd~e~v~~liDa~~~~~S~~~~ 277 (511) T protein:vir:78 198 KTDEDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTAN 277 (511) T ss_pred ccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccCcCcccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHH Confidence 00 0 11234444444421110 01123666666555555543333333333 Q ss_pred HHHhcCCCceEEEeCC-CCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHH Q lcl|Aclame:pro 198 YYENGAHAGYIMYVTD-AVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAAD 276 (344) Q Consensus 198 ~f~ng~~p~gil~~~~-~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~ 276 (344) .+...+.|-.+++ + ...+.++.+..++..--. ..+ ...+...+.....+.+++.++.......+.+..+.-.+. T Consensus 278 ~~~~~~~~~lv~~--G~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~ 352 (511) T protein:vir:78 278 YMSDLNDAMLLIK--GNLNLDPVEVRKQKEANVLF--LEP-TVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSD 352 (511) T ss_pred HHHHhhcchhhee--cCccCCchhhccccccccee--ccc-cceeccccccCCCCcceeEEeecCCHHHHHHHHHHHHHH Confidence 3444445544443 3 223333322222111000 000 000011111112233444444444556677777888899 Q ss_pred HHHHhcCCHHHhccccccccccccHHHH----------HHHHHHHHHHHHHHHHHHHHHhhCCccee--ccccccCCCCC Q lcl|Aclame:pro 277 LLDAHRIPFQLMGGKPENVGSLGDIEKV----------AKVFVRNELIPLQDRIREINGWLGQEVIR--FKNYSLDTDNG 344 (344) Q Consensus 277 Ia~~fgVPp~~lg~~~~~~~~~~n~e~~----------~~~f~~~~l~P~~~~ieeln~~L~~~~~~--f~~y~l~~~~~ 344 (344) |+..-++|..-.+... ++.++-.++.. ....+...|.-.++.+.++-...+..... +..-++.|.++ T Consensus 353 I~~~s~~P~~~~~~~~-~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~~~f~~~ 431 (511) T protein:vir:78 353 IHMFTNTPNMKDDNFS-GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRN 431 (511) T ss_pred HHHHhCCccccccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccceEEeCCC Confidence 9999999976544322 11111111111 11112222222222222211111110011 11224445555 No 170 >protein:vir:96366 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239644;genbank:gi:66395376;genbank:GeneID:5132842 Probab=59.02 E-value=0.4 Score=22.76 Aligned_cols=302 Identities=11% Similarity=0.020 Sum_probs=108.7 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) +.+++.+...-. + +-..+. .+...+--...+-....|+.+.. . +.. . T Consensus 74 l~~~~~~~~~~~--------~--------~~ki~~---n~~k~Iv~~~~~yl~g~p~~~~~-~-----d~~--------~ 120 (511) T protein:vir:96 74 LVELTRRKEEYM--------A--------DNRVAH---DYASYISDFINGYFLGNPIQYQD-D-----DKD--------V 120 (511) T ss_pred ccccCccccccc--------C--------cceeec---chHHHHHHHHhhhhcccCceeec-C-----chH--------H Confidence 111111000000 0 000000 11111100111111122222210 0 000 0 Q ss_pred hhHHHh-cccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---------eEEEEcC-- Q lcl|Aclame:pro 81 NILAST-FIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPS-- 148 (344) Q Consensus 81 ~~~~~~-~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---------~~y~~~~-- 148 (344) +..+.. ..-|.+ ...+..+..+.+.+|.+|..+.++.+|++ .+..++|..+.+..+.. +||.... T Consensus 121 ~~~l~~~~~~n~~--~~~~~~~~~~~~~~G~a~~~vy~d~dg~~-~i~~~~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~ 197 (511) T protein:vir:96 121 LEAIEAFNDLNDV--ESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFIIYDNTVERNSIAGVRYLRTKPID 197 (511) T ss_pred HHHHHHHHhhcCh--hHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEeeecc Confidence 000000 011111 12345567788999999999999988864 56677776665432211 1232211 Q ss_pred Cc--e----EEEEecccEEEecCCCC-------------------------CCCccccccchhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 149 FN--E----PTAFAPGSVFHLLEPDI-------------------------NQELYGLPEYLSALNSAWLNESATLFRRK 197 (344) Q Consensus 149 ~~--~----~~~~~~~eViH~r~~~~-------------------------~~~~~G~sp~~~~~~~i~~~~aa~~~~~~ 197 (344) ++ . ...+.++.|.++...+. .+.-.|.|-+......+..-..+..-..+ T Consensus 198 ~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~gd~e~v~~liDa~~~~~S~~~~ 277 (511) T protein:vir:96 198 KTDEDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTAN 277 (511) T ss_pred ccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccCcCcccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHH Confidence 00 0 11234444444421110 01123666666555555543333333333 Q ss_pred HHHhcCCCceEEEeCC-CCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHH Q lcl|Aclame:pro 198 YYENGAHAGYIMYVTD-AVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAAD 276 (344) Q Consensus 198 ~f~ng~~p~gil~~~~-~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~ 276 (344) .+...+.|-.+++ + ...+.++.+..++..--. ..+ ...+...+.....+.+++.++.......+.+..+.-.+. T Consensus 278 ~~~~~~~~~lv~~--G~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~ 352 (511) T protein:vir:96 278 YMSDLNDAMLLIK--GNLNLDPVEVRKQKEANVLF--LEP-TVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSD 352 (511) T ss_pred HHHHhhcchhhee--cCccCCchhhccccccccee--ccc-cceeccccccCCCCcceeEEeecCCHHHHHHHHHHHHHH Confidence 3444445544443 3 223333322222111000 000 000011111112233444444444556677777888899 Q ss_pred HHHHhcCCHHHhccccccccccccHHHH----------HHHHHHHHHHHHHHHHHHHHHhhCCccee--ccccccCCCCC Q lcl|Aclame:pro 277 LLDAHRIPFQLMGGKPENVGSLGDIEKV----------AKVFVRNELIPLQDRIREINGWLGQEVIR--FKNYSLDTDNG 344 (344) Q Consensus 277 Ia~~fgVPp~~lg~~~~~~~~~~n~e~~----------~~~f~~~~l~P~~~~ieeln~~L~~~~~~--f~~y~l~~~~~ 344 (344) |+..-++|..-.+... ++.++-.++.. ....+...|.-.++.+.++-...+..... +..-++.|.++ T Consensus 353 I~~~s~~P~~~~~~~~-~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~~~f~~~ 431 (511) T protein:vir:96 353 IHMFTNTPNMKDDNFS-GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRN 431 (511) T ss_pred HHHHhCCccccccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccceEEeCCC Confidence 9999999976544322 11111111111 11112222222222222211111110011 11224445555 No 171 >protein:vir:97336 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240606;genbank:gi:66396273;genbank:GeneID:5133692 Probab=56.63 E-value=0.45 Score=22.47 Aligned_cols=289 Identities=8% Similarity=0.023 Sum_probs=107.2 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHH-HhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILD-YVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVK 79 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~-~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~ 79 (344) +.++++........ ... |..-+.. .+.. +|.. ..+-.+-.|+.+.. .+.. T Consensus 77 ~~~~~~~~~~~~~~---~~~----------~~~ri~~-n~~k~Ivd~-~~~yl~g~p~~~~~------~d~~-------- 127 (492) T protein:vir:97 77 VKEPKPVDATGAVD---PLK----------PDDRMIT-NFHANLVDQ-KVSYIVGKPIAFKH------TDDE-------- 127 (492) T ss_pred cccccccccccccc---ccc----------ccccccc-chHHHHHHH-HhhhhcccCceecc------CchH-------- Confidence 11111100000000 000 0000000 1111 1111 11111122222100 0000 Q ss_pred hhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---------eEEEEcCCc Q lcl|Aclame:pro 80 RNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPSFN 150 (344) Q Consensus 80 ~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---------~~y~~~~~~ 150 (344) ....+-....|.+ ...+..+..+.+.+|.+|..+.++.+|++ .+..++|..+.+..+.. ++|...... T Consensus 128 ~~~~l~~~~~n~~--~~~~~~~~~~~~~~G~a~~~v~~d~dg~~-~~~~~~p~~~~~i~d~~~~~~~~~~vr~~~~~~~~ 204 (492) T protein:vir:97 128 VVKRIDEVLGNRF--DDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENET 204 (492) T ss_pred HHHHHHHHHhccH--HHHHHHHHHHHhhcCeEEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEeeccce Confidence 0011111111222 12344567788999999999999988874 46667776664432211 122211111 Q ss_pred eEEEEecccEEEecCC--------------------------CC----CCCccccccchhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 151 EPTAFAPGSVFHLLEP--------------------------DI----NQELYGLPEYLSALNSAWLNESATLFRRKYYE 200 (344) Q Consensus 151 ~~~~~~~~eViH~r~~--------------------------~~----~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ 200 (344) ....+.+..|.++... .| .+.-.|.|-+......+..-..+..-..+.+. T Consensus 205 ~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~ 284 (492) T protein:vir:97 205 KVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFK 284 (492) T ss_pred eEEEEecCeEEEEEEecCeeeecccccccccccccccCCCCCcceEEecCCCCCCCchHhHHHHHHHHHHHHHHHHHHHH Confidence 1111222222222100 00 00123667676655555544444444455556 Q ss_pred hcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHH Q lcl|Aclame:pro 201 NGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDA 280 (344) Q Consensus 201 ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~ 280 (344) ..+.|-.++ ++. +.+.....+..... .+++.++.+ .++++ +.....+..+.+..+.-.+.|+.. T Consensus 285 ~~~~~~l~~--~g~--~~~~~~~~~~~~~~-------~~~~~~~~~---~~~~~--l~~~~~~~~~~~~~~~L~~~I~~~ 348 (492) T protein:vir:97 285 DSNELTYVL--KNY--DDQELPEFKRLLRY-------YGAIKVSDN---GGVDT--IQVEVPVENSKKYLDELYQKIMLF 348 (492) T ss_pred Hhccceeee--ecC--CcccchhHHHHHhh-------ccceecCCC---Cccee--EeccCCHHHHHHHHHHHHHHHHHH Confidence 666665554 332 12222222222211 123333332 23344 333334566777778888899999 Q ss_pred hcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHH--------HH----HHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 281 HRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRI--------RE----INGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 281 fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~i--------ee----ln~~L~~~~~~f~~y~l~~~~~ 344 (344) -++|..-.+-.. + |.....+.+.-..+.-.+... ++ +.+.++... .+..-++.|.+. T Consensus 349 s~~p~~~~~~~~-~-----n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~-~~~~i~v~f~~~ 417 (492) T protein:vir:97 349 GQAVDFSSDKFG-S-----APSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKG-EHKDVDISFNYN 417 (492) T ss_pred hCCCCCCccccc-c-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccceeeEEecCC Confidence 999864432211 1 111222222222222211111 11 122223221 112223444444 No 172 >protein:vir:2732 Length: 501 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695105;genbank:gi:23455874;genbank:GeneID:955614 Probab=54.15 E-value=0.51 Score=22.18 Aligned_cols=302 Identities=11% Similarity=-0.023 Sum_probs=107.3 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) .-+.+.....+... ....+.- ..+. .....+--...+-....|+.+..-. ...... + T Consensus 67 ~g~~~~i~~~~~~~--~~~~~~~--------ki~~---n~~k~Ivd~~~~yl~g~p~~~~~~d-----~~~~~~-~---- 123 (501) T protein:vir:27 67 RGENHDVLQFGRRK--DREMADK--------RAVH---NYGRMISKFKTGYLAGNPIRVEYDD-----NDNNSQ-N---- 123 (501) T ss_pred cCCCccccccCccC--ccccccc--------eecc---chHHHHHHHHhhhhcccCeeEecCC-----ccchHH-H---- Confidence 11111000000000 0000000 0000 0111110011111122232221000 000000 0 Q ss_pred hhHHH-hcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---------eEEEEcC-- Q lcl|Aclame:pro 81 NILAS-TFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPS-- 148 (344) Q Consensus 81 ~~~~~-~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---------~~y~~~~-- 148 (344) ...+. ...-|.+ ...+..+..+.+.+|.+|+.+.++.+|++ .+..++|..+.+..+.. +||.... T Consensus 124 ~~~l~~~~~~n~~--~~~~~~~~~~~~~~G~a~~~vy~ded~~~-~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~ 200 (501) T protein:vir:27 124 DDTIKRIGRINDI--DSHNRTLIRDLSQTGRAYEVIYRNEYDET-RIKRLNPLETFVIYDNSLEDNSIAAVRYYNRGTLQ 200 (501) T ss_pred HHHHHHHHHhcCh--hHHHHHHHHHHhhCCeEEEEEEeCCCCce-EEEEEccceeEEEecCCCCCceEEEEEEEEeeecC Confidence 00000 0111211 13345667789999999999999988865 35666676554332211 1222111 Q ss_pred Cce--EEEEeccc------------------------EEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 149 FNE--PTAFAPGS------------------------VFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENG 202 (344) Q Consensus 149 ~~~--~~~~~~~e------------------------ViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng 202 (344) ++. ...+.++. |++++. ...|.|.+......+.....+..-..+.+... T Consensus 201 ~~~~~~~vyt~~~v~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~ 275 (501) T protein:vir:27 201 NAKDVVEIYTNEHIYTLDASDDFNEISVTTHAFGTVPITEFLN-----NVDGIGDYETELYLIDLYDSAESDTANHMSDM 275 (501) T ss_pred CcEEEEEEEeCCeEEEEEeCCceeeccccccCCCcccEEEecC-----CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHh Confidence 110 01112222 233321 22467777666555555444444444445555 Q ss_pred CCCceEEEeCCCCCC--HHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHH Q lcl|Aclame:pro 203 AHAGYIMYVTDAVQD--RNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDA 280 (344) Q Consensus 203 ~~p~gil~~~~~~l~--~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~ 280 (344) +.|-.++ ++.... ++....++... .......+.... ...+.+++.++....+..+.+..+.-.+.|+.. T Consensus 276 ~~~~~v~--~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~ 346 (501) T protein:vir:27 276 ADAILAI--YGDLALPKGMQASDMKRTR--LMQLKPPKSADG-----KEGTVKAEYLTKSYDVSGAEAYKTRLNRDIHIF 346 (501) T ss_pred cCceeee--ecCccCCcccchhhhhhcC--ceeecccccccC-----CCCCcceeeeeccCCHHHHHHHHHHHHHHHHHH Confidence 5554444 332222 22222222110 000011111111 123444555554555555667777788899999 Q ss_pred hcCCHHHhccccccccccccHHHHH----------HHHHHHHHHHHHHHHHHHHHhhCCcceeccc--cccCCCCC Q lcl|Aclame:pro 281 HRIPFQLMGGKPENVGSLGDIEKVA----------KVFVRNELIPLQDRIREINGWLGQEVIRFKN--YSLDTDNG 344 (344) Q Consensus 281 fgVPp~~lg~~~~~~~~~~n~e~~~----------~~f~~~~l~P~~~~ieeln~~L~~~~~~f~~--y~l~~~~~ 344 (344) -++|..-.+... ++.++..++-.. ...+...|.-+++.+.++-...+ ....++. -++.|.+. T Consensus 347 s~~p~~~~~~~~-~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~-~~~~~d~~~i~v~f~~~ 420 (501) T protein:vir:27 347 TNIPDMSDTNFS-GNTSGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVN-EFKDFDESLLKITFTPN 420 (501) T ss_pred hCCcccCccccc-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccccccccceEEeCCC Confidence 999975544321 112211111110 11122222222222211111111 1111211 13344444 No 173 >protein:vir:2341 Length: 488 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075278;genbank:gi:12657865;genbank:GeneID:920078 Probab=53.62 E-value=0.52 Score=22.12 Aligned_cols=301 Identities=13% Similarity=0.076 Sum_probs=100.9 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCcccccc------------chhHHHHhhhhhcC-cceeccccHH-HHHHHh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLD------------RRDILDYVECISNG-RWYEPPISFT-GLAKSL 66 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------------~~~v~~~~~~~~~~-~~~~~p~~~~-~l~~~~ 66 (344) |..-.. -+|+.++. .....+|. .+. .+-..+.... ...... T Consensus 1 ~~~~~~----------------------~d~~~~i~~L~~~~~~~~~r~~~~~~Yy---~g~~~i~~~~~~~~~~~~~~~ 55 (488) T protein:vir:23 1 MAETES----------------------IDPEKLRDQLLDAFENKQNELKSSKAYY---DAERRPDAIGLAVPLDMRKYL 55 (488) T ss_pred CCcccC----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccchhhcCcccchhhhhhh Confidence 111000 01111110 00111111 111 0111111111 111111 Q ss_pred hcchhhhhhhhhhhhhHHHh--cccCC----CC------C-------------HHHHHHHHHHHHhcCCeEEEEEECC-- Q lcl|Aclame:pro 67 RAAVHHSSPIYVKRNILAST--FIPHP----WL------S-------------QQDFSRFVLDFLVFGNAFLEKRYST-- 119 (344) Q Consensus 67 ~~~~~~~~~i~~~~~~~~~~--~~pn~----~~------~-------------~~~f~~~~~~~ll~Gnay~~i~r~~-- 119 (344) -...++..++......+... ..+.+ .. . ...+..+..+.+.+|.||+.+.++. T Consensus 56 ~~~n~~~~ivd~~a~~l~~~Gf~~~~~~~~~~~~~~d~~~~~~l~~i~~~N~~~~~~~~~~~~a~i~G~a~~~v~~~~~~ 135 (488) T protein:vir:23 56 AHVGYPRTYVDAIAERQELEGFRIPSANGEEPESGGENDPASELWDWWQANNLDIEATLGHTDALIYGTAYITISMPDPE 135 (488) T ss_pred hhcchHHHHHHHHHHhhhccceeccCCcccccccccchhHHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcc Confidence 11222222222222111110 01111 00 0 0112234567789999999987643 Q ss_pred ------CCceEEEEEecCcceeccccCc--------eEEEEcCCceE---EEEeccc----------------------- Q lcl|Aclame:pro 120 ------TGKVIRLETSPAKYTRRGVEED--------VYWWVPSFNEP---TAFAPGS----------------------- 159 (344) Q Consensus 120 ------~G~~~~L~pl~~~~v~~~~~~~--------~~y~~~~~~~~---~~~~~~e----------------------- 159 (344) .|. ..+..++|..+.+..+.. .+|+-..++.. ..+.++. T Consensus 136 ~~~~~~~~~-~~i~~~~p~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~ 214 (488) T protein:vir:23 136 VDFDVDPEV-PLIRVEPPTALYAEVDPRTRKVLYAIRAIYGADGNEIVSATLYLPDTTMTWLRAEGEWEAPTSTPHGLEM 214 (488) T ss_pred cccCCCCCc-ceEEEeccceeEEEEecCCCceEEEEEEEEecCCCcEEEEEEEecCcEEEEEecCCceEeccccccCCCC Confidence 222 235566666544322211 01111111110 0111111 Q ss_pred --EEEecCCCCCCCccccccchh----hHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHH--HHHHHHHHh Q lcl|Aclame:pro 160 --VFHLLEPDINQELYGLPEYLS----ALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIE--MLRENMVKS 231 (344) Q Consensus 160 --ViH~r~~~~~~~~~G~sp~~~----~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~--~lk~~~~~~ 231 (344) |+||++..-..+.+|.|-+.- +..++.....-..-...||. .|--++ .|..+++...+ .-...|+.. T Consensus 215 vPvv~f~n~~~~~~~~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a---~p~~~i--~G~~~~~~~~~~~~~~~~~~~~ 289 (488) T protein:vir:23 215 VPVIPISNRTRLSDLYGTSEISPELRSVTDAAAQILMNMQGTANLMA---IPQRLI--FGAKPEELGINAETGQRMFDAY 289 (488) T ss_pred cceEEeccccccCCcCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh---hHHHHH--hCCCcccccccccccchhhhhh Confidence 466654322345677776542 22222222222112222332 232222 22222211111 011222222 Q ss_pred hccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHH- Q lcl|Aclame:pro 232 KGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVR- 310 (344) Q Consensus 232 ~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~- 310 (344) . +++++++.+. +.++..+..... -.+++..+..+.+|+..=++|++.+|....+.+++.-+......+.. T Consensus 290 ~-----~~v~~~~~g~---~~~~~q~~~~~~-~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~n~~Sg~Al~~~~~~l~~k 360 (488) T protein:vir:23 290 M-----ARILAFEGGE---GAHAEQFSAAEL-RNFVDALDALDRKAASYSGLPPQYLSSSSDNPASAEAIKAAESRLVKK 360 (488) T ss_pred h-----hhhccCCCCC---CceeEecCCCCh-HHHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHHHHHHHH Confidence 1 3455554322 344555443222 23888888888999999999999998643322222111111111111 Q ss_pred ---------HHHHHHHHHHHHHHHhhCCccee--ccccccCCCCC Q lcl|Aclame:pro 311 ---------NELIPLQDRIREINGWLGQEVIR--FKNYSLDTDNG 344 (344) Q Consensus 311 ---------~~l~P~~~~ieeln~~L~~~~~~--f~~y~l~~~~~ 344 (344) ..|.-.++.+.+ .++..... +..-++.|.+. T Consensus 361 ~~~~~~~f~~~l~~~~~l~~~---~~~~~~~~~~~~~i~v~f~~~ 402 (488) T protein:vir:23 361 VERKNKIFGGAWEQAMRLAYK---MVKGGDIPTEYYRMETVWRDP 402 (488) T ss_pred HHHHHHHHHHHHHHHHHHHHH---HhcCCCcchhhccceEEecCC Confidence 111111111111 11211111 11112222222 No 174 >protein:vir:99781 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004303;genbank:gi:122891757;genbank:GeneID:4712336 Probab=53.11 E-value=0.54 Score=22.06 Aligned_cols=302 Identities=12% Similarity=0.016 Sum_probs=105.4 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) +.+++.++..-. +.. ..+. .+...+--...+-....|+.+.. . +. .. T Consensus 74 ~~~~~~~~~~~~--------~~~--------ki~~---n~~k~Iv~~~~~yl~g~p~~~~~-~-----d~--------~~ 120 (511) T protein:vir:99 74 LVELTRRKEEYM--------ADN--------RVAH---DYASYISDFINGYFLGNPIQYQD-D-----DK--------DV 120 (511) T ss_pred ccccCccccccc--------Ccc--------eeec---chHHHHHHHHHhhhcccCceeec-C-----ch--------HH Confidence 111111100000 000 0000 11111100011111112222200 0 00 00 Q ss_pred hhHHHh-cccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---------eEEEEc--C Q lcl|Aclame:pro 81 NILAST-FIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVP--S 148 (344) Q Consensus 81 ~~~~~~-~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---------~~y~~~--~ 148 (344) +..+.. ..-|.+ ...+..+..+.+.+|.+|..+.++.+|++ .+..++|..+.+..+.. +||... . T Consensus 121 ~~~l~~~~~~n~~--~~~~~~~~~~~~i~G~a~~~vy~ded~~~-~i~~~~p~~~~~vyd~~~~~~~~~~vr~~~~~~~~ 197 (511) T protein:vir:99 121 LEAIEAFNDLNDV--ESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPID 197 (511) T ss_pred HHHHHHHHhhcCH--hHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEEeeecc Confidence 001110 111111 13345667788999999999999987764 56667776654432211 122221 0 Q ss_pred C---ce---EEEEecccEEEecCCCC-------------------------CCCccccccchhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 149 F---NE---PTAFAPGSVFHLLEPDI-------------------------NQELYGLPEYLSALNSAWLNESATLFRRK 197 (344) Q Consensus 149 ~---~~---~~~~~~~eViH~r~~~~-------------------------~~~~~G~sp~~~~~~~i~~~~aa~~~~~~ 197 (344) + +. ...+.++.|.+++.... .+.-.|.|.+......+.....+..-..+ T Consensus 198 ~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~ 277 (511) T protein:vir:99 198 KTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTAN 277 (511) T ss_pred cCccceEEEEEEEeCCcEEEEEecCCccccccccccccccCCCCccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHH Confidence 0 00 11234444444321100 00123566665555444433333222233 Q ss_pred HHHhcCCCceEEEeCC-CCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHH Q lcl|Aclame:pro 198 YYENGAHAGYIMYVTD-AVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAAD 276 (344) Q Consensus 198 ~f~ng~~p~gil~~~~-~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~ 276 (344) .+...+.|-.++ ++ ...++++....++.-.-. ... .......+.....+.+++.++.......+....+.-.+. T Consensus 278 ~~~~~~~~~lv~--~G~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~ 352 (511) T protein:vir:99 278 YMSDLNDAMLLI--KGNLNLDPVEVRKQKEANVLF-LEP--TVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSD 352 (511) T ss_pred HHHHhhchhhhh--ccCcccCchhhccccccccee-ccc--ccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHH Confidence 333334443333 33 223333322222110000 000 000000000112344555555544556677777888899 Q ss_pred HHHHhcCCHHHhccccccccccccHHHHHH----------HHHHHHHHHHHHHHHHHHHhhCCccee--ccccccCCCCC Q lcl|Aclame:pro 277 LLDAHRIPFQLMGGKPENVGSLGDIEKVAK----------VFVRNELIPLQDRIREINGWLGQEVIR--FKNYSLDTDNG 344 (344) Q Consensus 277 Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~----------~f~~~~l~P~~~~ieeln~~L~~~~~~--f~~y~l~~~~~ 344 (344) |+..-++|..-.+... ++.++..++.... ..+...|.=.++.+.++-...+..... +..-++.|.++ T Consensus 353 I~~~s~~P~~~~~~~~-gn~Sg~Alk~~~~~l~~ka~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~i~f~~~ 431 (511) T protein:vir:99 353 IHMFTNTPNMKDDNFS-GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDVSKDFNTVRYVYNRN 431 (511) T ss_pred HHHHhCCccccccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccceEEeCCC Confidence 9999999986543322 1122111111111 111111111111111111111110011 11223445555 No 175 >protein:vir:96839 Length: 474 # NCBI annotation: ORF008 # Family: family:all:125 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240152;genbank:gi:66395815;genbank:GeneID:5133180 Probab=52.40 E-value=0.56 Score=21.98 Aligned_cols=288 Identities=8% Similarity=0.015 Sum_probs=107.0 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) +.++++........ ... |..-+.. .+...+--...+-..-.|+.+.. .+. +. T Consensus 59 ~~~~~~~~~~~~~~---~~~----------~~~ki~~-n~~~~Ivd~~~~~l~g~p~~~~~------~d~--------~~ 110 (474) T protein:vir:96 59 LRLAPKLDNKGEID---PLK----------PDWRMFT-NYHQNLVDQKVAYAVANPVTFSS------DDD--------KS 110 (474) T ss_pred hhccchhccccccc---ccc----------cchhccc-chHHHHHHhhhhhhcccCceeec------Cch--------HH Confidence 22111110000000 000 0000000 11111100111111122222210 000 00 Q ss_pred hhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---------eEEEEcCCce Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPSFNE 151 (344) Q Consensus 81 ~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---------~~y~~~~~~~ 151 (344) ...+.....|.+ ......+..+.+.+|.+|+.+..+.+|++ .+..++|..+-+..+.. ++|....... T Consensus 111 ~~~l~~~~~n~~--~~~~~~~~~~~~~~G~~~~~~y~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~~~vr~~~~~~~~~ 187 (474) T protein:vir:96 111 LKTIQEVLNHKW--DDKLVDILTAASNKGIEWLQPYIDENGEF-KTFRVPAEQAIPIWTNKERDTLKAFIRYYRLDGAER 187 (474) T ss_pred HHHHHHHHhcCH--HHHHHHHHHHHHhcCeeEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEeecCceE Confidence 011111111211 22344566788899999999999888875 47777776655432211 1222211111 Q ss_pred EEEEeccc---------------------------------------EEEecCCCCCCCccccccchhhHHHHHHHHHHH Q lcl|Aclame:pro 152 PTAFAPGS---------------------------------------VFHLLEPDINQELYGLPEYLSALNSAWLNESAT 192 (344) Q Consensus 152 ~~~~~~~e---------------------------------------ViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~ 192 (344) ...+..+. |+|++. ...|.|-+......+..-..+. T Consensus 188 ~~~yt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~g~sd~e~v~~liDa~d~~~ 262 (474) T protein:vir:96 188 VEYWTDSDVTYYEYQDGILIPDYYHGEEHIQSHYYVGNKRVSWGRVPFIPFKN-----NPQEMSDLFMYKTIIDAMDKRL 262 (474) T ss_pred EEEEeCCeEEEEEecCCceeeccccccccccccccccccccCCCceeEEEecc-----CCCCCCcHHHHHHHHHHHHHHH Confidence 11122222 233322 1236666665555555444444 Q ss_pred HHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhh Q lcl|Aclame:pro 193 LFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKA 272 (344) Q Consensus 193 ~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~ 272 (344) .-..+.+...+.|-.++ ++....+ .+.....+ ...+++.+.+. |-+++.++.......+.+..+. T Consensus 263 S~~~~~~~~~~~~~lv~--~g~~~~~--~~~~~~~~-------~~~~~i~~~~~----~~~~~~l~~~~~~~~~~~~~~~ 327 (474) T protein:vir:96 263 SDTQNTFDESTELIYIL--KGYEGQD--LDEFMRNL-------KYYKAINVDGD----GSGVDTIQIEVPVQSSKEYLDM 327 (474) T ss_pred HHHHHHHHHhccceeee--ecCCccc--ccchhhhh-------hcCceEEecCC----CCceeEEeecCChHHHHHHHHH Confidence 44455556666664444 4433221 11111111 12344444321 2233444434445557777788 Q ss_pred hHHHHHHHhcCCHHHhccccccccccccHHHHH----------HHHHHHHHHHHHHHHHHHHHhhCCcceeccccccCCC Q lcl|Aclame:pro 273 SAADLLDAHRIPFQLMGGKPENVGSLGDIEKVA----------KVFVRNELIPLQDRIREINGWLGQEVIRFKNYSLDTD 342 (344) Q Consensus 273 ~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~----------~~f~~~~l~P~~~~ieeln~~L~~~~~~f~~y~l~~~ 342 (344) ..+.|+..-++|..-.+-. +++.++-.++-.. ..++...|.-.++.|. ..++.+. ....-++.|+ T Consensus 328 l~~~i~~~s~~p~~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~~i~---~~~~~~~-~~~~i~i~f~ 402 (474) T protein:vir:96 328 LRDYVIEFGQGVDFQQDKF-GNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYII---DFYKLNI-KVQDVEITFN 402 (474) T ss_pred HHHHHHHHhCCcccccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCc-ccceeeEEec Confidence 8899999999996543211 1111111111110 0111111222111111 1122211 1111233455 Q ss_pred CC Q lcl|Aclame:pro 343 NG 344 (344) Q Consensus 343 ~~ 344 (344) +. T Consensus 403 ~~ 404 (474) T protein:vir:96 403 FN 404 (474) T ss_pred cC Confidence 55 No 176 >protein:vir:78227 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491663;genbank:gi:157786487;genbank:GeneID:5625705 Probab=49.58 E-value=0.63 Score=21.67 Aligned_cols=285 Identities=12% Similarity=0.069 Sum_probs=100.2 Q ss_pred cCCccccccchhHHHHhh-h-------------hhcCc--ceeccccHH-HHHHHhhcchhhhhhhhhhhhhHHHhcccC Q lcl|Aclame:pro 28 FGEPVPVLDRRDILDYVE-C-------------ISNGR--WYEPPISFT-GLAKSLRAAVHHSSPIYVKRNILASTFIPH 90 (344) Q Consensus 28 ~~~p~~~~~~~~v~~~~~-~-------------~~~~~--~~~~p~~~~-~l~~~~~~~~~~~~~i~~~~~~~~~~~~pn 90 (344) ...+. +...|+. . ...|. +-..+.... .+....-...++..++......+ .++ T Consensus 1 ~~t~~------~~i~~L~~~~~~~~~r~~~l~~Yy~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l----~~~ 70 (480) T protein:vir:78 1 MTTYH------EHVERLQGLLARDLPNLLEAEAYRNGTRRLKTIGIGAPPELAYLDVQPGWVATYLRTLSDRL----DIE 70 (480) T ss_pred CCCHH------HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHhhhhhhcchHHHHHHHHHhhh----ccC Confidence 11111 1111111 0 11111 001111110 01111011122222222211111 122 Q ss_pred CCCC------HH-------------HHHHHHHHHHhcCCeEEEEEEC------CCCceEEEEEecCcceeccccCc---- Q lcl|Aclame:pro 91 PWLS------QQ-------------DFSRFVLDFLVFGNAFLEKRYS------TTGKVIRLETSPAKYTRRGVEED---- 141 (344) Q Consensus 91 ~~~~------~~-------------~f~~~~~~~ll~Gnay~~i~r~------~~G~~~~L~pl~~~~v~~~~~~~---- 141 (344) .+.. .. .+..+..+.+.+|.||+.+.++ ..|.+ .+..++|..+.+..+.. T Consensus 71 g~~~~~d~~~~~~l~~i~~~N~~d~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~g~~-~i~~~~p~~~~~~~D~~~~~~ 149 (480) T protein:vir:78 71 GFRISEDSEGLEELWNWWQANDLDEESVLGHDDSLTFGRSYITVSHPDVESGDPAGIP-LIRVESPLYMYAELDPRNTRR 149 (480) T ss_pred ceecCCCchhHHHHHHHHHhcCHHHHHHHHHHHHhhcCceEEEEecCccccCCCCCee-EEEEEcccceEEEEcCCCccc Confidence 2110 11 1233456788999999999763 33443 46667776654433211 Q ss_pred -----eEEEEcC-Cce---EEEEecc-----------------------------cEEEecCCCCCCCccccccchh-h- Q lcl|Aclame:pro 142 -----VYWWVPS-FNE---PTAFAPG-----------------------------SVFHLLEPDINQELYGLPEYLS-A- 181 (344) Q Consensus 142 -----~~y~~~~-~~~---~~~~~~~-----------------------------eViH~r~~~~~~~~~G~sp~~~-~- 181 (344) .+|.... .+. ...+.++ -|+||++..-.++.+|.|-+.- . T Consensus 150 ~~~~i~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~n~~~~~~~~G~s~i~~~v~ 229 (480) T protein:vir:78 150 VTRAVRLYTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPVVPLTNDPRLGNRYGRSEISPELR 229 (480) T ss_pred eEEEEEEEEeecCCCceEEEEEEeCCeEEEEEecCCCccccccccccccCCCCCcceEEeecccccCCccCcccchhhHH Confidence 0111100 000 0011111 2455553322344567776542 2 Q ss_pred --HHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeeccc Q lcl|Aclame:pro 182 --LNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSE 259 (344) Q Consensus 182 --~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~ 259 (344) .+++.....-..-...+ .+.|--+| .|..+++...+.-...|.... +.++.+.+ +..++..+.. T Consensus 230 ~l~Da~~~~~s~~~~~~~~---~a~p~~~i--~G~~~~~~~~~~~~~~~~~~~-----~~~~~~~~----~~~~~~~~~~ 295 (480) T protein:vir:78 230 KVTDAASRTLMNLQSASQI---LGTPLRVI--SGVTTDELTNDGENTTLDIYY-----GRILTLAS----EAAKISEFKA 295 (480) T ss_pred HHHHHHHHHHHHHHHHHHh---hcchhhhh--hcCCccccccccccchhhhhh-----hhhccCCC----CCceEEecCc Confidence 23222222222222222 23443333 343222222111112222211 12233321 2344555443 Q ss_pred chhHHH-HHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHH--------H----HHHh Q lcl|Aclame:pro 260 VATKDD-FFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIR--------E----INGW 326 (344) Q Consensus 260 ~~~d~q-~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie--------e----ln~~ 326 (344) . +++ +++..+..+.+|+..=++|+..+|....+.+++..+.... ..|.=.+.+.+ + +-.. T Consensus 296 ~--~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~n~~Sg~Alk~~~-----~~l~~ka~~~~~~f~~~l~~~~~l~~~~ 368 (480) T protein:vir:78 296 A--ELRNFAEEMEVFRKEAASITGLPPQYLSSSSENPASAEAIIATD-----SRIVKMAERKGRIFGGAWERAMRIAMQI 368 (480) T ss_pred c--CHHHHHHHHHHHHHHHhcccCCChHHhccccCcchHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2 233 7777788888899999999999987433222222222111 11111111111 1 1111 Q ss_pred hCCcc-eeccccccCCCCC Q lcl|Aclame:pro 327 LGQEV-IRFKNYSLDTDNG 344 (344) Q Consensus 327 L~~~~-~~f~~y~l~~~~~ 344 (344) +|.+. ..+..-++.|.+. T Consensus 369 ~g~~~~~~~~~i~v~f~~~ 387 (480) T protein:vir:78 369 MGREVTEEYTRLETVWRDP 387 (480) T ss_pred cCCCccccceeeeEEecCC Confidence 12111 1111112233332 No 177 >protein:vir:97171 Length: 512 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239722;genbank:gi:66394876;genbank:GeneID:5130904 Probab=48.50 E-value=0.67 Score=21.55 Aligned_cols=303 Identities=12% Similarity=0.014 Sum_probs=111.2 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) +.+++..+..-. + +-..+. .+...+--...+-....|+.+.. .+......+.. T Consensus 74 ~~~~~~~~~~~~--------~--------~~ki~~---n~~k~Ivd~~~~yl~g~p~~~~~------~d~~~~~~l~~-- 126 (512) T protein:vir:97 74 LVELTRRKEEYM--------A--------DNRVAH---DYASYISDFINGYFLGNPIQCQD------DDKDVLEAIEA-- 126 (512) T ss_pred ccccCccccccc--------C--------cceeec---chHHHHHHHHhhhhcccCceecc------CChHHHHHHHH-- Confidence 111111100000 0 000000 11111100111111122222210 00000000000 Q ss_pred hhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---------eEEEEc--CC Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVP--SF 149 (344) Q Consensus 81 ~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---------~~y~~~--~~ 149 (344) ...-|.+ ...+..+..+.+.+|.+|..+.++.+|++ .+..++|..+.+..+.. +||... .+ T Consensus 127 -----~~~~n~~--~~~~~~~~~~~~i~G~ay~~vy~ded~~~-~i~~~~p~~~~~iyd~~~~~~~~~~vr~~~~~~~~~ 198 (512) T protein:vir:97 127 -----FNDLNDV--ESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDK 198 (512) T ss_pred -----HHhhcCH--HHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEeeeccc Confidence 0001111 12345667788999999999999988864 56777777665433211 122221 11 Q ss_pred c---e---EEEEecccEEEecCCCC-------------------------CCCccccccchhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 150 N---E---PTAFAPGSVFHLLEPDI-------------------------NQELYGLPEYLSALNSAWLNESATLFRRKY 198 (344) Q Consensus 150 ~---~---~~~~~~~eViH~r~~~~-------------------------~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~ 198 (344) + . ...+.++.|.+++.... .+.-.|.|.+......+.....+..-..+. T Consensus 199 ~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~gd~e~v~~liDa~d~~~S~~~~~ 278 (512) T protein:vir:97 199 TDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANY 278 (512) T ss_pred cccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCcccceEeecCCCCCCCchhhhHHHHHHHHHHHHHHHHH Confidence 0 0 01234444444321100 001236666665555555444444444444 Q ss_pred HHhcCCCceEEEeCC-CCCCHHHHHHHHHHHHH-hhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHH Q lcl|Aclame:pro 199 YENGAHAGYIMYVTD-AVQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAAD 276 (344) Q Consensus 199 f~ng~~p~gil~~~~-~~l~~e~~~~lk~~~~~-~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~ 276 (344) +...+.|-.++. + ...+++.....+....- ............... ..|.+++.++.......+....+.-.+. T Consensus 279 ~~~~~~~~lv~~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~~~l~~~~~~~~~e~~~~~L~~~ 353 (512) T protein:vir:97 279 MSDLNDAMLLIK--GNLNLDPVEVRKQKEANVLFLEPTVYENRDTGIET---EGSVDGGYIYKQYDVQGTEAYKDRLNSD 353 (512) T ss_pred HHHhcCceeeee--cCccCCchhhhhhhhcccccccccchhhcccccCC---CCCcceEEEeecCCHHHHHHHHHHHHHH Confidence 555556655553 3 22333333332221111 111111111111111 2344455555444555566777778899 Q ss_pred HHHHhcCCHHHhccccccccccccHHHH----------HHHHHHHHHHHHHHHHHHHHHhhCCccee--ccccccCCCCC Q lcl|Aclame:pro 277 LLDAHRIPFQLMGGKPENVGSLGDIEKV----------AKVFVRNELIPLQDRIREINGWLGQEVIR--FKNYSLDTDNG 344 (344) Q Consensus 277 Ia~~fgVPp~~lg~~~~~~~~~~n~e~~----------~~~f~~~~l~P~~~~ieeln~~L~~~~~~--f~~y~l~~~~~ 344 (344) |...-++|..-.+... ++.++-.++-. ....+...|.=.++.+.++-...+..... +..-++.|.+. T Consensus 354 I~~~s~~p~~~~~~~~-gn~Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~~~f~~~ 432 (512) T protein:vir:97 354 IHMFTNTPNMKDDNFS-GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRN 432 (512) T ss_pred HHHHhCCcccCccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccceEEeCCC Confidence 9999999976554322 11211111110 01111111211111111111111110011 11223445554 No 178 >protein:vir:94805 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240531;genbank:gi:66396197;genbank:GeneID:5133585 Probab=48.26 E-value=0.68 Score=21.52 Aligned_cols=290 Identities=8% Similarity=0.017 Sum_probs=106.8 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) +.++++......... . . |..-+.. .+...+--...+-.+-.|+.+.. .+. .. T Consensus 77 ~~~~~~~~~~~~~~~-~--~----------~~~ri~~-n~~k~Ivd~~~~yl~G~p~~~~~------~d~--------~~ 128 (492) T protein:vir:94 77 VKEPKPVDATGAVDP-L--K----------PDDRMIT-NFHANLVDQKVSYIVGKPIAFKH------TDD--------EV 128 (492) T ss_pred ccccccccccccccc-c--c----------ccccccc-chHHHHHHHHHhhhcccCceecc------Cch--------HH Confidence 221111100000000 0 0 0000000 11111100011111122222210 000 00 Q ss_pred hhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---------eEEEEcCCce Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPSFNE 151 (344) Q Consensus 81 ~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---------~~y~~~~~~~ 151 (344) ...+-....|.+ ...+..+..+.+.+|.+|..+..+.+|++ .+..++|..+.+..+.. ++|....... T Consensus 129 ~~~l~~~~~n~~--~~~~~~~~~~a~~~G~a~~~v~~d~dg~~-~~~~~~p~~~~~v~d~~~~~~~~a~ir~~~~~~~~~ 205 (492) T protein:vir:94 129 VKRIDEVLGNRF--DDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETK 205 (492) T ss_pred HHHHHHHHhccH--HHHHHHHHHHHhhCCeEEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEeecccee Confidence 011111111221 12344566788999999999999988875 46667776654432211 1222211111 Q ss_pred EEEEecccEEEecCC--------------------------CC----CCCccccccchhhHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 152 PTAFAPGSVFHLLEP--------------------------DI----NQELYGLPEYLSALNSAWLNESATLFRRKYYEN 201 (344) Q Consensus 152 ~~~~~~~eViH~r~~--------------------------~~----~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~n 201 (344) ...+....|.++... .| .+.-.|.|-+......+.....+..-..+.+.. T Consensus 206 ~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~sd~e~v~~liDa~d~~~S~~~~~~~~ 285 (492) T protein:vir:94 206 VEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKD 285 (492) T ss_pred EEEEecCeEEEEEEecCeeeeccccccccccccccccCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH Confidence 111222222222100 00 011236676766555555554444444555666 Q ss_pred cCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHh Q lcl|Aclame:pro 202 GAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAH 281 (344) Q Consensus 202 g~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~f 281 (344) .+.|-.+++ +. +.+.....+.... ..+++.++.+ .+++|. ........+....+.-.+.|+..- T Consensus 286 ~~~p~lv~~--g~--~~~~~~~~~~~~~-------~~~~~~~~~~---~~~~~l--~~~~~~~~~~~~~~~l~~~I~~~s 349 (492) T protein:vir:94 286 SNELTYVLK--NY--DDQELPEFKRLLR-------YYGAIKVSDN---GGVDTI--QVEVPVENSKKYLDELYQKIMLFG 349 (492) T ss_pred hcCceeeee--cC--CcccchhhHHHHh-------hccceecCCC---CcceeE--eccCCHHHHHHHHHHHHHHHHHHh Confidence 666755553 32 2222222222221 1233333332 233342 223334445666677788889988 Q ss_pred cCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHH--------H----HHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 282 RIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIR--------E----INGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 282 gVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie--------e----ln~~L~~~~~~f~~y~l~~~~~ 344 (344) ++|..-.+-.. + |.....+.+.-..+.-.+...+ + +.+.++... .+...++.|.+. T Consensus 350 ~~p~~~~~~~~-~-----n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~-~~~~i~v~f~~~ 417 (492) T protein:vir:94 350 QAVDFSSDKFG-S-----APSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKG-EHKDVDISFNYN 417 (492) T ss_pred CCcCCCccccc-c-----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccceeeEEecCC Confidence 88854332111 1 1111222222222221121111 1 112222211 122334444544 No 179 >protein:vir:79043 Length: 479 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110721;genbank:gi:134287338;genbank:GeneID:4955217 Probab=47.83 E-value=0.69 Score=21.47 Aligned_cols=305 Identities=7% Similarity=0.020 Sum_probs=107.6 Q ss_pred CCCCCCCCCCCchhhcccccc---ceEEEEcCC---------ccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhc Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAP---KMEAFTFGE---------PVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRA 68 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~---~~~~~~~~~---------p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 68 (344) |.|.+.+.... -...-.+.- .-.....++ |..-+. ..+...+--...+-....|+.+.. . T Consensus 32 ~~~~~~~~~~~-~~~yy~g~~~i~~~~~~~~~~~~~~~~~~~~~~ki~-~~~~~~Ivd~~~~~l~g~p~~~~~------~ 103 (479) T protein:vir:79 32 ILKHRPEKYKQ-GEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAI-NNYHKLLVDQKVGYSVGNPIVFNA------D 103 (479) T ss_pred HhhhhHHHHHH-HHHHhccCCcccccccccccccccccccccCcceee-cchHHHHHHHHHhhhhcCCceecc------C Confidence 33321110000 000000000 000000000 000000 011111100001111112222100 0 Q ss_pred chhhhhhhhhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc------- Q lcl|Aclame:pro 69 AVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED------- 141 (344) Q Consensus 69 ~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~------- 141 (344) + .+....+-...-|.+ ...+..++.+.+.+|.+|..+..+..|++ .+..++|..+.+..+.. T Consensus 104 ~--------~~~~~~~~~~~~n~~--~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~~ 172 (479) T protein:vir:79 104 D--------DNLTKLLNDLLGEEF--DDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRELVA 172 (479) T ss_pred C--------HHHHHHHHHHHhcCH--HHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEccceeEEEEeCCCCCceEE Confidence 0 000011111111211 23345667788999999999999887765 36666776654432111 Q ss_pred --eEEEEc-CCceE----EEEecccEEEecCCCC---------------------------------------CCCcccc Q lcl|Aclame:pro 142 --VYWWVP-SFNEP----TAFAPGSVFHLLEPDI---------------------------------------NQELYGL 175 (344) Q Consensus 142 --~~y~~~-~~~~~----~~~~~~eViH~r~~~~---------------------------------------~~~~~G~ 175 (344) ++|... ..+.. ..+.++.|.|++.-.. .+.-.|. T Consensus 173 ~ir~y~~~~~~~~~~~~~e~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~g~ 252 (479) T protein:vir:79 173 FIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCV 252 (479) T ss_pred EEEEEEEeecCCceEEEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccccCCCcccEEEecCCCCCC Confidence 122221 11111 1222333333321000 0112366 Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCC--CCHHHHHHHHHHHHHhhccccccccccccCCCccccce Q lcl|Aclame:pro 176 PEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAV--QDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIK 253 (344) Q Consensus 176 sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~--l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~ 253 (344) |-+......+..-..+..-..+.+...+.|-.+++ +.. .+++..+.+ ..++++.+.++ .+++ T Consensus 253 sd~~~v~~liDa~d~~~S~~~~~~~~~~~~~~v~~--g~~~~~~~~~~~~~-----------~~~~~i~~~~~---~~~~ 316 (479) T protein:vir:79 253 SDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLK--EYPGTSLQEFIDNI-----------RYYKSIKVDGG---GGVD 316 (479) T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeee--cCCccccccchhhh-----------hhccceecCCC---Ccce Confidence 66665555554444343334445566666655553 321 112211111 12334444433 2344 Q ss_pred eeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHH----------HHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 254 IIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEK----------VAKVFVRNELIPLQDRIREI 323 (344) Q Consensus 254 ~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~----------~~~~f~~~~l~P~~~~ieel 323 (344) +.. ....+..+.+..+.-.+.|...-++|..-.+.. ++.++.-++. .....+...|.-.++.+.++ T Consensus 317 ~l~--~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~--gn~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~ 392 (479) T protein:vir:79 317 KLE--INIPVEAKKELLDRLEKNIIIFGQGVNPESQNT--GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEY 392 (479) T ss_pred EEe--ccCCHHHHHHHHHHHHHHHHHHhCccccccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 433 333455566677777888988889986533321 1111111111 01111222222222222111 Q ss_pred HHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 324 NGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 324 n~~L~~~~~~f~~y~l~~~~~ 344 (344) -...+...+....-++.|.+. T Consensus 393 ~~~~~~~~~~~~~i~i~f~~~ 413 (479) T protein:vir:79 393 LKISGNKSYDYKTVQITFNHS 413 (479) T ss_pred HhccCCCccccccceEEeCCC Confidence 111111111122224445555 No 180 >protein:vir:102426 Length: 631 # NCBI annotation: gp11 # Family: family:all:2798 # MgeID: mge:1618 # MgeName: Pipefish # Cross-refs: genbank:acc:YP_655288;genbank:gi:109521851;genbank:GeneID:4157741 Probab=47.15 E-value=0.71 Score=21.40 Aligned_cols=324 Identities=10% Similarity=0.038 Sum_probs=153.2 Q ss_pred CCCCCCCCCCCch--hhccccccce-EEEEcCCccccccchhHHHHhhh---hhcCcceeccccHHHHHHHhhcchhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAA--KKMTASAPKM-EAFTFGEPVPVLDRRDILDYVEC---ISNGRWYEPPISFTGLAKSLRAAVHHSS 74 (344) Q Consensus 1 msk~~~~~~~~~~--~~~~~~~~~~-~~~~~~~p~~~~~~~~v~~~~~~---~~~~~~~~~p~~~~~l~~~~~~~~~~~~ 74 (344) |||.-.. .+.+. ..+..-.... +.-.+-+ ...+.+..|--+ +..++ ..++..+. +.++.+.. T Consensus 38 ~~~~~g~-~~~~~WQ~eAW~~~d~v~Elry~vg----W~~~s~sr~rL~as~idpDt-g~ptg~ie------e~~~~~~~ 105 (631) T protein:vir:10 38 FSKSTGI-SRNSDWQTDAWEAVDLVGELRYYVG----WRASSCSRCRLVASELDENT-GLPTGGIS------EDNTEGER 105 (631) T ss_pred hhhhcCC-cccchhhHHHHHHHHhhhhHHHHhh----hhhhhhceeeeEeeeeccCC-CCCccccc------cCCchhHH Confidence 7766433 33321 1111111111 1111111 111222222211 11122 24444432 12333322 Q ss_pred hhhhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEE-ECCCCc----------eEEEEEecCcceeccccCc-e Q lcl|Aclame:pro 75 PIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKR-YSTTGK----------VIRLETSPAKYTRRGVEED-V 142 (344) Q Consensus 75 ~i~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~-r~~~G~----------~~~L~pl~~~~v~~~~~~~-~ 142 (344) +.. +....-...+--.+.++.++.++.+-|..|+.+. |..+|- .-+++++....+.....++ . T Consensus 106 v~~-----~~~~i~gG~lgQ~~llkrl~~~ltV~GE~wiv~l~~p~~~~~~~pd~~~r~~~~W~~vt~~ei~~~~~g~g~ 180 (631) T protein:vir:10 106 VRE-----IVSKIADGTLGQAALTKRVVECLTVPGELWIVILTRPVKGAPAQPDGSVRTRQEWYAVSKEEIKKSNKGSGT 180 (631) T ss_pred HHH-----HHHhcCCCcchHHHHHHHHHhheecccceEEEEEeccCcCCCCCcccccccccceeeccHHHHhcccCcccc Confidence 211 1111112233334556777778778899998874 333321 3356667777776554444 3 Q ss_pred EEEEcCCceEEEEec-ccEEEec--CCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCC---- Q lcl|Aclame:pro 143 YWWVPSFNEPTAFAP-GSVFHLL--EPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAV---- 215 (344) Q Consensus 143 ~y~~~~~~~~~~~~~-~eViH~r--~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~---- 215 (344) -+.++. |....|.. -|| -|| .+.+..-..--||..+++.++.-..-..+..++--+.-.+-.|||-+|... T Consensus 181 ~v~lp~-g~~h~~~~~~D~-l~RiW~P~prr~~e~dSpvra~l~~l~Ei~~~t~~i~aaakSRl~gnGvlflP~els~P~ 258 (631) T protein:vir:10 181 NIVLPT-GEEHEFVKGTDI-IFRVWIPKPRKASEPDSPVRAVLDSIREIVRTTKTIANASKSRLIGNGVLFVPHEMSLPA 258 (631) T ss_pred eeecCC-CCccceecCCce-EEEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHHHHHhhCceeEeccccccCC Confidence 344443 44444433 343 234 455666677889999999988888877777777777777777888766421 Q ss_pred ----------------CCHHHHHHHHHHH-HH---h---hccccccccccccC-CCccccceeeecccchhHHHHHHHHh Q lcl|Aclame:pro 216 ----------------QDRNDIEMLRENM-VK---S---KGRNNFKNLFLYAP-QGKADGIKIIPLSEVATKDDFFNIKK 271 (344) Q Consensus 216 ----------------l~~e~~~~lk~~~-~~---~---~g~~n~~~~~vl~~-~~~~~gl~~~pl~~~~~d~q~~e~~~ 271 (344) ..+-+.++|.+.+ +. . .+...+--++|+.. +..-++++...+... -+.--+.+|+ T Consensus 259 ~~~~~~~~~g~~v~~~~g~pa~~~l~~~l~q~a~tai~De~S~aA~vPii~~~p~E~i~~i~hlkf~~e-i~e~aiktR~ 337 (631) T protein:vir:10 259 AQGPVSEVEGEEIAPLVGEPAVQQLTDMLFQVAETAVEDEDSQAAFIPVIAGVPGEQIKDVKHIRFDNE-ITEVAIKTRN 337 (631) T ss_pred CCCCCCCcCCccCCccccchhHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechHHhcCeeEEeecCc-hhHHHHhhHH Confidence 1112445554444 21 1 12233333344332 222345555554432 3444778899 Q ss_pred hhHHHHHHHhcCCHHHh-ccccccccccc--------------cHHHHHHHHHHHHHHHHHHHHH-HHHHhhC------- Q lcl|Aclame:pro 272 ASAADLLDAHRIPFQLM-GGKPENVGSLG--------------DIEKVAKVFVRNELIPLQDRIR-EINGWLG------- 328 (344) Q Consensus 272 ~~~~~Ia~~fgVPp~~l-g~~~~~~~~~~--------------n~e~~~~~f~~~~l~P~~~~ie-eln~~L~------- 328 (344) -.+..||...-|||..| |+..+.+-|.+ -++-....++.+-|.|.++.+- .-+++.. T Consensus 338 daI~RlA~glDi~pE~LLGlGsd~NHWsAWqI~dedVrlHI~P~l~lic~AlT~q~Lrp~Le~eGvDp~kYvvW~DaS~L 417 (631) T protein:vir:10 338 DAIARLAMGLDVSPERLLGLGSQTNHWSAWQISDEDVQLHIAPVMEIFCQALTDQILRVTLAREGIDPSKYVVWYDPSQL 417 (631) T ss_pred HHHHHHHhccCCchhhheeccCCccceEEEEecccceeeecchHHHHHHHHHHhhHHHHHHHHhCCCHHHhEeeecCccc Confidence 99999999999999865 44233333321 1222333344444444443321 1111100 Q ss_pred --------------------Cc----ceeccc---cccCCCCC Q lcl|Aclame:pro 329 --------------------QE----VIRFKN---YSLDTDNG 344 (344) Q Consensus 329 --------------------~~----~~~f~~---y~l~~~~~ 344 (344) .+ ..-|.+ |++++.|| T Consensus 418 t~dPdr~deA~qa~drGAIt~eAlrk~lGf~eDd~yd~~t~e~ 460 (631) T protein:vir:10 418 TIDPDKSDEAKFAYENGAINGEALRKYLGLGDDAGYDFTTREG 460 (631) T ss_pred ccCCCCcHHHHHHHHcCCcCHHHHHHHhcCchhcccCcCchHH Confidence 00 001222 44444444 No 181 >protein:vir:3964 Length: 453 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663672;genbank:gi:21716109;genbank:GeneID:951201 Probab=44.11 E-value=0.82 Score=21.06 Aligned_cols=287 Identities=9% Similarity=0.021 Sum_probs=103.4 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) ..++.+... .+. -..+. .+...+--...+-....|+.+.. .+......++. T Consensus 50 ~~~~~~~~~----------~~~--------~ki~~---n~~~~ivd~~~~~l~g~~~~~~~------~d~~~~~~l~~-- 100 (453) T protein:vir:39 50 DAEPTKDLW----------KPD--------NRLTV---NFTKYIVDTFTGYFNGIPVKKSH------SDKETLSKLQE-- 100 (453) T ss_pred hcCCCcccc----------Ccc--------ceeec---chHHHHHHHHhhhhcccCceecc------CChHHHHHHHH-- Confidence 111110000 000 00000 01111000011111112221100 00000000000 Q ss_pred hhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc--------eEEEEcCCceE Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--------VYWWVPSFNEP 152 (344) Q Consensus 81 ~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~--------~~y~~~~~~~~ 152 (344) ...-|.+ ...+..+..+.+.+|.+|+.+.++.+|.+ .+..++|..+.+..+.. ..|....+... T Consensus 101 -----i~~~N~~--~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~ 172 (453) T protein:vir:39 101 -----FDNLNDM--EDEESELAKMACIYGRAFELLYQNEETQT-NVIYNTPENMFMVYDDTIKQEPLFAVRYGYDDDYKL 172 (453) T ss_pred -----HHHhcCh--hHHHHHHHHHHhhcCeEEEEEEecCCCce-EEEEEcccceEEEecCCCCCeEEEEEEEEEeCCeEE Confidence 0111111 12345677789999999999999988875 35555665543322110 00111111100 Q ss_pred --EEEeccc-------------------------EEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 153 --TAFAPGS-------------------------VFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHA 205 (344) Q Consensus 153 --~~~~~~e-------------------------ViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p 205 (344) ..+.++. |++++. .-.|.|.+......+.....+..-..+.....+.| T Consensus 173 ~~~~yt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~~~p 247 (453) T protein:vir:39 173 YGEVYTKETTYALNGTMGFYNMTEQAPNPFDDLPVVEFYF-----NEERMSIFESVISLVNAFNKAISEKANDVDYFSDQ 247 (453) T ss_pred EEEEEeCCeEEEEEecCCceeeecccccCCCceeEEEecC-----CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCc Confidence 0111222 233332 12466666655554433333333333334555566 Q ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCH Q lcl|Aclame:pro 206 GYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPF 285 (344) Q Consensus 206 ~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp 285 (344) -.++ ++..++++....++.. +.+.+....+...+-++..++.......+.+..+.-.+.|...-++|. T Consensus 248 ~~~~--~g~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~l~~~I~~~s~~p~ 315 (453) T protein:vir:39 248 YLTF--LGAAVEEEDLKNIRSN----------RVINYYGESSEAKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMVAN 315 (453) T ss_pred eeee--ecCCCCchhhhhhhhc----------ceeeecCCCCCCCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcc Confidence 5554 4555665554443221 011111111111222333344344455677777888888999999985 Q ss_pred HHhccccccccccccHHHH----------HHHHHHHHHHHHHHHHHHHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 286 QLMGGKPENVGSLGDIEKV----------AKVFVRNELIPLQDRIREINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 286 ~~lg~~~~~~~~~~n~e~~----------~~~f~~~~l~P~~~~ieeln~~L~~~~~~f~~y~l~~~~~ 344 (344) .-.+.. +++++.-++.. ....+...|...++.+.++....+.. ..+..=.+.|.+. T Consensus 316 ~~~~~~--gn~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~-~~~~~i~v~f~~~ 381 (453) T protein:vir:39 316 ISDESF--GSSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLYCELSTNVSNK-EAWKDIEYTFTRN 381 (453) T ss_pred cccccc--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-cccccceEEeCCC Confidence 322211 11221111111 11222233333333333322222211 1111112333333 No 182 >protein:vir:1236 Length: 483 # NCBI annotation: similar to phage Spp1 gp6 (portal protein) # Family: family:all:125 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510935;genbank:gi:17426269;genbank:GeneID:927380 Probab=44.04 E-value=0.82 Score=21.05 Aligned_cols=289 Identities=8% Similarity=0.026 Sum_probs=105.4 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHH-hhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDY-VECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVK 79 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~-~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~ 79 (344) +.++++........ .. .|..-+.. .+... |.. ..+-.+-.|+.+.. .+. . T Consensus 68 ~~~~~~~~~~~~~~---~~----------~~~~ki~~-n~~k~Ivd~-~~~~l~G~p~~~~~------~d~--------~ 118 (483) T protein:vir:12 68 VKEPKPVDATGAVD---PL----------KPDDRMIT-NFHANLVDQ-KVSYIVGKPIAFKH------TDD--------E 118 (483) T ss_pred cccccccccccccc---cc----------cccccccc-chHHHHHHH-HhhhhcccCceecc------CCh--------H Confidence 11111100000000 00 00000000 11111 110 11111122222210 000 0 Q ss_pred hhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---------eEEEEcCCc Q lcl|Aclame:pro 80 RNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPSFN 150 (344) Q Consensus 80 ~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---------~~y~~~~~~ 150 (344) ....+-....|.+ ...+..+..+.+.+|.+|..+..+.+|++ .+..++|..+.+..+.. ++|...... T Consensus 119 ~~~~l~~~~~n~~--~~~~~~~~~~~~~~G~~y~~v~~d~d~~~-~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~ 195 (483) T protein:vir:12 119 VVKRIDEVLGNRF--DDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENET 195 (483) T ss_pred HHHHHHHHHhccH--HHHHHHHHHHHhhCCeEEEEEEEcCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEeecce Confidence 0111111111222 23345566788899999999999988875 47777777664432211 122221211 Q ss_pred eEEEEecccEEEecCC--------------------------CC----CCCccccccchhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 151 EPTAFAPGSVFHLLEP--------------------------DI----NQELYGLPEYLSALNSAWLNESATLFRRKYYE 200 (344) Q Consensus 151 ~~~~~~~~eViH~r~~--------------------------~~----~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ 200 (344) ....+.+..|.|+... .| .+.-.|.|-+......+..-..+..-..+.+. T Consensus 196 ~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~ 275 (483) T protein:vir:12 196 KVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFK 275 (483) T ss_pred EEEEEecCeEEEEEEeCCeeeecccccccccccccccCCCCccceEEecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHH Confidence 1112222222222100 00 01124666666555555444333333444445 Q ss_pred hcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHH Q lcl|Aclame:pro 201 NGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDA 280 (344) Q Consensus 201 ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~ 280 (344) ..+.|-.+++ +...+ .....+..++ ..+++.+..+ .++++. .....+..+.+..+.-.+.|+.. T Consensus 276 ~~~~~~lv~~--g~~~~--~~~~~~~~~~-------~~~~~~~~~~---~~~~~l--~~~~~~~~~~~~~~~l~~~I~~~ 339 (483) T protein:vir:12 276 DSNELTYVLT--NYDDQ--ELPEFKRLLR-------YYGAIKVSDN---GGVDTI--QVEVPVENSKKYLDELYQKIMLF 339 (483) T ss_pred HhcCceeeee--cCCcc--cchhHHHhhh-------hccccccCCC---CcceEE--eecCCHHHHHHHHHHHHHHHHHH Confidence 5566644543 42222 1122222121 1123333332 233443 33334555667777778889999 Q ss_pred hcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHH--------HH----HHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 281 HRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRI--------RE----INGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 281 fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~i--------ee----ln~~L~~~~~~f~~y~l~~~~~ 344 (344) -++|....+-.. ++. ....+.+.-..+.-.+... ++ +...++... .+...++.|.+. T Consensus 340 s~~p~~~~~~~~-~n~-----Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~li~~~~~~~~-~~~~i~v~f~~~ 408 (483) T protein:vir:12 340 GQAVDFSSDKFG-SAP-----SGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKG-EHKDVDISFNYN 408 (483) T ss_pred hCCCCCCccccc-cCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccceeeEEeCCC Confidence 999864433211 111 1111222211121111111 11 122223221 122234444444 No 183 >protein:vir:8654 Length: 629 # NCBI annotation: gp12 # Family: family:all:2798 # MgeID: mge:156 # MgeName: Rosebush # Cross-refs: genbank:acc:NP_817773;genbank:gi:29566205;genbank:GeneID:1259465 Probab=43.47 E-value=0.84 Score=20.99 Aligned_cols=339 Identities=10% Similarity=0.107 Sum_probs=142.8 Q ss_pred CCC---C--CCCCCCCchhh------ccccc-cceEEE--Ec-CCccc-cccchhHHHHhhhh----hcCcceeccccHH Q lcl|Aclame:pro 1 MSK---K--KGKTLQPAAKK------MTASA-PKMEAF--TF-GEPVP-VLDRRDILDYVECI----SNGRWYEPPISFT 60 (344) Q Consensus 1 msk---~--~~~~~~~~~~~------~~~~~-~~~~~~--~~-~~p~~-~~~~~~v~~~~~~~----~~~~~~~~p~~~~ 60 (344) |.- | +++|..++... +++.- .+...+ ++ +++.. +.... ..|.+.+ +.-.|...-++.. T Consensus 1 ma~~~lr~~rrpk~~p~~~r~~al~aas~~i~~p~~~~~ks~~~~~~~~WQ~eA--W~~~d~v~Elry~vgW~~~s~Sr~ 78 (629) T protein:vir:86 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDA--WKAYDAVGELRYYVGWRSSSASRV 78 (629) T ss_pred CCccceeeeecCCCCChhhhhhhhhhhhhccccccchhhhhcCCCchhhhhHHH--HHHHHhhhhHHHHhhhhhhhhcee Confidence 432 1 12222222111 11110 111111 01 11110 11111 1111100 0000111111100 Q ss_pred HH-HHHhh-------cchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCC------CceE-E Q lcl|Aclame:pro 61 GL-AKSLR-------AAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTT------GKVI-R 125 (344) Q Consensus 61 ~l-~~~~~-------~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~------G~~~-~ 125 (344) +| +.... ....+......+...+....-...+--.+.++.+..++.+-|..|+.+.--.. |.++ + T Consensus 79 rL~as~idpDtg~ptg~i~e~~~~~~~v~~~v~~i~gG~lgqa~lLkr~~~~ltV~GE~wiv~~~~~~~~~d~~~~~~~e 158 (629) T protein:vir:86 79 RLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPE 158 (629) T ss_pred eeEeeeecCCCCCCccccCCCchhHHHHHHHHHhhcCChhhHHHHHHHHHhheecccceEEEEeecCCCccCCCCcchhh Confidence 00 00000 00001111111111122222222333345667778888899999998863222 2222 2 Q ss_pred EEEecCcceeccccCceEEEEcCCceEEEEecccEEEec--CCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 126 LETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPGSVFHLL--EPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGA 203 (344) Q Consensus 126 L~pl~~~~v~~~~~~~~~y~~~~~~~~~~~~~~eViH~r--~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~ 203 (344) .+-+.+..+...- ++.-...+.++.-...+..+++ +| .+.+..-..--||..+++.++.-..-..+..++--+.-. T Consensus 159 W~~vt~~ei~~~~-~~~~i~lP~g~~~e~~~~~d~l-~RiW~P~Prr~~e~DSpvra~l~~l~Ei~~lt~~i~aaakSRL 236 (629) T protein:vir:86 159 WLALTPEEVRASE-KKTIIELPTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRL 236 (629) T ss_pred heeechHHhhhcc-CceeeEcCCCCcceeeCCCceE-EEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHHHHH Confidence 3333333333222 2223333444333334445555 66 455556667889999999888877777777766666666 Q ss_pred CCceEEEeCCCC---------------------CCHHHHHHHHHHHHH----h---hccccccccccccC-CCcccccee Q lcl|Aclame:pro 204 HAGYIMYVTDAV---------------------QDRNDIEMLRENMVK----S---KGRNNFKNLFLYAP-QGKADGIKI 254 (344) Q Consensus 204 ~p~gil~~~~~~---------------------l~~e~~~~lk~~~~~----~---~g~~n~~~~~vl~~-~~~~~gl~~ 254 (344) +-.|||.++... +..-+.+.|.+.+-+ . .+...+--++|+.. +..-++++. T Consensus 237 ~gnGvlflP~e~slP~~~~p~~~n~pg~~~p~~~~~pa~~~l~~~l~q~a~tAi~De~S~aA~vPiia~~P~E~i~~i~h 316 (629) T protein:vir:86 237 IGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTH 316 (629) T ss_pred hhCceeeeccCcccCccCCCCCCCCCCcccccccccchHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechHHhcCeeE Confidence 666776554311 111144455555531 1 12233333344332 222245555 Q ss_pred eecccchhHHHHHHHHhhhHHHHHHHhcCCHHHh-ccccccccccc--------------cHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 255 IPLSEVATKDDFFNIKKASAADLLDAHRIPFQLM-GGKPENVGSLG--------------DIEKVAKVFVRNELIPLQDR 319 (344) Q Consensus 255 ~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~~~~~~--------------n~e~~~~~f~~~~l~P~~~~ 319 (344) ..+... -+.--+.+|+-.+..+|...-|||..| |+..+.+-|.+ -++-....++.+-|.|.++. T Consensus 317 lkf~~e-i~e~aiktR~daI~RlA~glDippE~LLGlGsd~NHWsAWqI~dedvrlHI~P~l~~ic~AlT~~~Lrp~Le~ 395 (629) T protein:vir:86 317 LKFDNQ-VTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMR 395 (629) T ss_pred EeecCc-hhHHHHhhHHHHHHHHHhccCCchhhheeccCCccceEEEEecccceeeecchHHHHHHHHHHhhHHHHHHHH Confidence 554432 344477889999999999999999865 44233333321 12223334444445554443 Q ss_pred HH-HHHHhhC---------------------------Cc----ceeccc---cccCCCCC Q lcl|Aclame:pro 320 IR-EINGWLG---------------------------QE----VIRFKN---YSLDTDNG 344 (344) Q Consensus 320 ie-eln~~L~---------------------------~~----~~~f~~---y~l~~~~~ 344 (344) .- .-+++.. .+ ..-|.+ |+|.+.|| T Consensus 396 eGiDp~kYvvW~DaS~Lt~dPd~~deA~~a~drGAIt~eAlrk~lGf~eD~~yd~tt~E~ 455 (629) T protein:vir:86 396 EGIDPNAYVVWHDASQLTVDPDKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEG 455 (629) T ss_pred hCCCHHHhEeeecCcccccCCCCcHHHHHHHHcCCcCHHHHHHHhcCccccccCCCchHH Confidence 21 1111110 00 011333 55555555 No 184 >protein:vir:96240 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239567;genbank:gi:66395299;genbank:GeneID:5132789 Probab=43.40 E-value=0.85 Score=20.98 Aligned_cols=301 Identities=12% Similarity=0.019 Sum_probs=110.5 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) +.+++.++..-. + +-..+. .+...+--...+-....|+.+.. .+.. . T Consensus 74 ~~~~~~~~~~~~--------~--------~~ki~~---n~~k~Iv~~~~~yl~g~p~~~~~------~~~~--------~ 120 (511) T protein:vir:96 74 LVELTRRKEEYM--------A--------DNRVAH---DYASYISDFINGYFLGNPIQYQD------DDKD--------V 120 (511) T ss_pred ccccCcCccccc--------C--------cceeec---chHHHHHHHHHhhhccCCceeec------CchH--------H Confidence 221111100000 0 000000 11111100011111122222210 0000 0 Q ss_pred hhHHHh-cccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---------eEEEEc--C Q lcl|Aclame:pro 81 NILAST-FIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVP--S 148 (344) Q Consensus 81 ~~~~~~-~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---------~~y~~~--~ 148 (344) +..+.. ..-|.+ ...+..+..+.+.+|.+|..+.++.+|++ .+..++|..+.+..+.. +||... . T Consensus 121 ~~~l~~~~~~n~~--~~~~~~~~~~~~i~G~a~~~vy~ded~~~-~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~d 197 (511) T protein:vir:96 121 LEAIEAFNDLNDV--ESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPID 197 (511) T ss_pred HHHHHHHHhhcCH--HHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEEeeecc Confidence 001100 011111 12345667788999999999999987764 56777777665432211 122221 0 Q ss_pred C---ceE---EEEecccEEEecCCCC-------------------------CCCccccccchhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 149 F---NEP---TAFAPGSVFHLLEPDI-------------------------NQELYGLPEYLSALNSAWLNESATLFRRK 197 (344) Q Consensus 149 ~---~~~---~~~~~~eViH~r~~~~-------------------------~~~~~G~sp~~~~~~~i~~~~aa~~~~~~ 197 (344) + +.. ..+.++.|.++..... .+.-.|.|-+......+..-..+..-..+ T Consensus 198 ~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~g~gd~e~v~~liDa~d~~~S~~~~ 277 (511) T protein:vir:96 198 KTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTAN 277 (511) T ss_pred ccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCCceeeEEecCCCCCCCchhhhHHHHHHHHHHHHHHHH Confidence 0 000 1233344443321000 00124666666665555544443333344 Q ss_pred HHHhcCCCceEEEeCC-CCCCHHHHHHHHHHHH-HhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHH Q lcl|Aclame:pro 198 YYENGAHAGYIMYVTD-AVQDRNDIEMLRENMV-KSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAA 275 (344) Q Consensus 198 ~f~ng~~p~gil~~~~-~~l~~e~~~~lk~~~~-~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~ 275 (344) .+...+.|-.+++ + ...+.++....++.-. .... .......+.....+.++..++.......+.+..+.-.+ T Consensus 278 ~~~~~~~~~lv~~--g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~ 351 (511) T protein:vir:96 278 YMSDLNDAMLLIK--GNLNLDPVEVRKQKEANVLFLEP----TVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNS 351 (511) T ss_pred HHHHhhCceeeee--cCccCCchhhcccccccceeccc----ccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHH Confidence 4555555644443 3 2233333222211110 0000 00000000111234445555544456667778888889 Q ss_pred HHHHHhcCCHHHhccccccccccccHHHHH----------HHHHHHHHHHHHHHHHHHHHhhCCcce--eccccccCCCC Q lcl|Aclame:pro 276 DLLDAHRIPFQLMGGKPENVGSLGDIEKVA----------KVFVRNELIPLQDRIREINGWLGQEVI--RFKNYSLDTDN 343 (344) Q Consensus 276 ~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~----------~~f~~~~l~P~~~~ieeln~~L~~~~~--~f~~y~l~~~~ 343 (344) .|...-++|..-.+... ++.++-.++-.. ...+...|.-.++.|.++-...+.... .+..-++.|.+ T Consensus 352 ~I~~~s~~p~~~~~~~~-~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~~~f~~ 430 (511) T protein:vir:96 352 DIHMFTNTPNMKDDNFS-GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWSIDANKDFNTVRYVYNR 430 (511) T ss_pred HHHHHhCCccccccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccccceEEeCC Confidence 99999999976543321 111111111111 111122222222222211111111101 11222444555 Q ss_pred C Q lcl|Aclame:pro 344 G 344 (344) Q Consensus 344 ~ 344 (344) + T Consensus 431 ~ 431 (511) T protein:vir:96 431 N 431 (511) T ss_pred C Confidence 5 No 185 >protein:vir:106639 Length: 481 # NCBI annotation: ORF003 # Family: family:all:125 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239490;genbank:gi:66395218;genbank:GeneID:4555793 Probab=42.44 E-value=0.88 Score=20.87 Aligned_cols=308 Identities=10% Similarity=0.008 Sum_probs=103.7 Q ss_pred CCCCCCCCCCCchhhcccccc------ceEEEEcC-CccccccchhHHH-HhhhhhcCcceeccccHHHHHHHhhcchhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAP------KMEAFTFG-EPVPVLDRRDILD-YVECISNGRWYEPPISFTGLAKSLRAAVHH 72 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~------~~~~~~~~-~p~~~~~~~~v~~-~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~ 72 (344) +++++.+... . ...-.+.. ........ .|..-+.. .+.. .+... .+-....|+.+.. .+. T Consensus 43 ~~~~~~~~~~-~-~~yY~g~~~~i~~~~~~~~~~~~~~~~ki~~-n~~~~ivd~~-~~~l~g~~~~~~~------~d~-- 110 (481) T protein:vir:10 43 QTEQVPRLEM-L-ESYYLNRNTDILAGERRLQKYGDKADHRAVH-NYAKYVSRFI-VGYLTGNPITITH------QDN-- 110 (481) T ss_pred HHHHHHHHHH-H-HHHhcCCCcccccCccccccccccccceeec-chHHHHHHHH-HhhhccCCceEec------CCh-- Confidence 1111111000 0 00000000 00000000 00000000 0000 11100 0111111111100 000 Q ss_pred hhhhhhhhhhHHHh-cccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---------e Q lcl|Aclame:pro 73 SSPIYVKRNILAST-FIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------V 142 (344) Q Consensus 73 ~~~i~~~~~~~~~~-~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---------~ 142 (344) +....+.. ..-|.+ ...+..+..+.+.+|.+|+.+.++.+|++ .+..++|..+.+..+.. + T Consensus 111 ------~~~~~l~~~~~~n~~--~~~~~~~~~~~~~~G~~~~~~~~d~dg~~-~i~~~~p~~~~~v~d~~~~~~~~~~i~ 181 (481) T protein:vir:10 111 ------QTNDKIIELNDLNDA--DEVNSDLALNLSIYGRAYEIVYRDFEDRD-TFKVLDPKSTFVVYDQTLDKKVVAGVR 181 (481) T ss_pred ------hHHHHHHHHHHhcCh--hHHHHHHHHHHHhcCeEEEEEEeCCCCeE-EEEEEcccceEEEEcCCCCCceEEEEE Confidence 00000000 011111 13455677789999999999999988875 46677776654332211 1 Q ss_pred EEEEcCC-ce----EEEEecccEEEecCCC----------------C----CCCccccccchhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 143 YWWVPSF-NE----PTAFAPGSVFHLLEPD----------------I----NQELYGLPEYLSALNSAWLNESATLFRRK 197 (344) Q Consensus 143 ~y~~~~~-~~----~~~~~~~eViH~r~~~----------------~----~~~~~G~sp~~~~~~~i~~~~aa~~~~~~ 197 (344) +|..... +. ...+.++.|.|++.-+ | .+...|.|.+......+........-..+ T Consensus 182 ~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~~~~~~v~~lida~~~~~s~~~~ 261 (481) T protein:vir:10 182 YFEKQDKDKVPVQHVEVYTTDKIYYIEIKGGTYHRVEEVEHYYNDVPIIEYLNDQFKQGDFENVIALIDLYDSAQSDTAN 261 (481) T ss_pred EEEEeeCCCceEEEEEEEecCeEEEEEecCCceeecccccccCCceeEEEeecCCCCCCchhhHHHHHHHHHHHHHHHHH Confidence 2222111 11 0122333333332110 0 01123555554444333322222122222 Q ss_pred HHHhcCCCceEEEeCCC-CCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHH Q lcl|Aclame:pro 198 YYENGAHAGYIMYVTDA-VQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAAD 276 (344) Q Consensus 198 ~f~ng~~p~gil~~~~~-~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~ 276 (344) .+.-.+.|-.++. +. ..+++..+.++..-. .. -..+...... .++-+++-++.......+.+..+.-++. T Consensus 262 ~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 332 (481) T protein:vir:10 262 YMTDLNDAMLAII--GNVDLDSEDAKAFRDANM-IH---LEPGTNANGS---EGKAEVKYVYKQYDVAGVEAYKKRLQND 332 (481) T ss_pred HHHHhcCceeEee--cCcCCCccchhhhhhccc-ee---ccccccccCC---CCCcceeEEeecCCHHHHHHHHHHHHHH Confidence 2333444544443 32 223333333322100 00 0111111111 1122333333334456677778888999 Q ss_pred HHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHH----HH----HH----HHHhhCC---cceeccccccCC Q lcl|Aclame:pro 277 LLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQD----RI----RE----INGWLGQ---EVIRFKNYSLDT 341 (344) Q Consensus 277 Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~----~i----ee----ln~~L~~---~~~~f~~y~l~~ 341 (344) |...-++|....|...+ +.++ +. +.+....|.-.+. .+ ++ +.+.++. .......-++.| T Consensus 333 i~~~s~~p~~~~~~~~~-n~Sg---~A--l~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~v~f 406 (481) T protein:vir:10 333 IHKYTNTPDLNDEQFSG-VQSG---ES--MKYKLFGLEQVRAIKERLFKKGLMKRYKLLLNNVNLTGLKQHNYAELTITF 406 (481) T ss_pred HHHHhCCcccccccccc-ccHH---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccceeeEEe Confidence 99999999876653321 1211 11 1111111111111 11 11 1111111 111112234555 Q ss_pred CCC Q lcl|Aclame:pro 342 DNG 344 (344) Q Consensus 342 ~~~ 344 (344) .+. T Consensus 407 ~~~ 409 (481) T protein:vir:10 407 TPN 409 (481) T ss_pred CCC Confidence 555 No 186 >protein:vir:99088 Length: 629 # NCBI annotation: gp12 # Family: family:all:2798 # MgeID: mge:1608 # MgeName: Qyrzula # Cross-refs: genbank:acc:YP_655692;genbank:gi:109521770;genbank:GeneID:4157810 Probab=40.77 E-value=0.96 Score=20.69 Aligned_cols=339 Identities=11% Similarity=0.108 Sum_probs=142.9 Q ss_pred CCC---C--CCCCCCCchhh------ccccc-cceEEE--Ec-CCcc-ccccchhHHHHhhhh----hcCcceeccccHH Q lcl|Aclame:pro 1 MSK---K--KGKTLQPAAKK------MTASA-PKMEAF--TF-GEPV-PVLDRRDILDYVECI----SNGRWYEPPISFT 60 (344) Q Consensus 1 msk---~--~~~~~~~~~~~------~~~~~-~~~~~~--~~-~~p~-~~~~~~~v~~~~~~~----~~~~~~~~p~~~~ 60 (344) |.- | +++|..++... +++.- .+...+ ++ +++. .+.... ..|.+.+ +.-.|...-++.. T Consensus 1 ma~~~lr~~rrpk~~p~~~r~~al~aas~~i~~p~~~~~ks~~~~~~~~WQ~eA--W~~~d~v~Elry~vgW~~~s~Sr~ 78 (629) T protein:vir:99 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQDDA--WKAYDAVGELRYYVGWRSSSASRV 78 (629) T ss_pred CCccceeeeecCCCCChhhhhhhhhhhhhcccccchhhhhhcCCCchhhhhHHH--HHHHHhhhhHHHHhhhhhhhhcee Confidence 432 1 12222222111 01100 011111 01 1111 011111 1111100 0000111111100 Q ss_pred HH-HHHhh-------cchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCC------CceE-E Q lcl|Aclame:pro 61 GL-AKSLR-------AAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTT------GKVI-R 125 (344) Q Consensus 61 ~l-~~~~~-------~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~------G~~~-~ 125 (344) +| +.... ....+......+...+....-...+--.+.++.+..++.+-|..|+.+.--.. |.++ + T Consensus 79 rL~as~idpDtg~ptg~i~e~~~~~~~v~~~v~~i~gG~lgqa~lLkr~~~~ltV~GE~wiv~~~~~~~~~d~~~~~~~e 158 (629) T protein:vir:99 79 RLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPE 158 (629) T ss_pred eeEeeeecCCCCCCccccCCCchhHHHHHHHHHhhcCChhhHHHHHHHHHhheecccceEEEEeecCCCccCCCCcchhh Confidence 00 00000 00001111111111122222222333345667778888899999998863222 2222 2 Q ss_pred EEEecCcceeccccCceEEEEcCCceEEEEecccEEEec--CCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 126 LETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPGSVFHLL--EPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGA 203 (344) Q Consensus 126 L~pl~~~~v~~~~~~~~~y~~~~~~~~~~~~~~eViH~r--~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~ 203 (344) .+-+.+..+...- ++.-...+.++.-...+..|++ +| .+.+..-..--||..+++.++.-..-..+..++--+.-. T Consensus 159 W~~vt~~ei~~~~-~~~~i~lP~g~~~e~~~~~d~l-~RiW~P~Prr~~e~DSpvra~l~~l~Ei~~lt~~i~aaakSRL 236 (629) T protein:vir:99 159 WLALTPEEVRASE-KKTIIELPTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRL 236 (629) T ss_pred heeechHHhhhcc-CceeEEcCCCCccceeCCCceE-EEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHHHHH Confidence 3333333333222 2223333444333334445655 66 455556667889999999888877777777776666666 Q ss_pred CCceEEEeCCCC---------------------CCHHHHHHHHHHHHH----h---hccccccccccccC-CCcccccee Q lcl|Aclame:pro 204 HAGYIMYVTDAV---------------------QDRNDIEMLRENMVK----S---KGRNNFKNLFLYAP-QGKADGIKI 254 (344) Q Consensus 204 ~p~gil~~~~~~---------------------l~~e~~~~lk~~~~~----~---~g~~n~~~~~vl~~-~~~~~gl~~ 254 (344) +-.|||.++... +..-+.+.|.+.+-+ . .+...+--++|+.. +..-++++. T Consensus 237 ~gnGvlflP~e~slP~~~~p~~~n~pg~~~p~~~~~pa~~~l~~~l~q~a~tAi~De~S~aA~vPiia~~P~E~i~~i~h 316 (629) T protein:vir:99 237 IGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTH 316 (629) T ss_pred hhCceeEeccCcccCccCCCCCCCCCCcccccccccchHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechHHhcCeeE Confidence 666776554311 111144455555531 1 12233333344332 222245555 Q ss_pred eecccchhHHHHHHHHhhhHHHHHHHhcCCHHHh-ccccccccccc--------------cHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 255 IPLSEVATKDDFFNIKKASAADLLDAHRIPFQLM-GGKPENVGSLG--------------DIEKVAKVFVRNELIPLQDR 319 (344) Q Consensus 255 ~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~~~~~~--------------n~e~~~~~f~~~~l~P~~~~ 319 (344) ..+... -+.--+.+|+-.+..+|...-|||..| |+..+.+-|.+ -++-....++.+-|.|.++. T Consensus 317 lkf~~e-i~e~aiktR~daI~RlA~glDippE~LLGlGsd~NHWsAWqI~dedvrlHI~P~l~~ic~AlT~~~Lrp~Le~ 395 (629) T protein:vir:99 317 LKFDNQ-VTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMR 395 (629) T ss_pred EeecCc-hhHHHHhhHHHHHHHHHhccCCchhhheeccCCccceEEEEecccceeeecchhHHHHHHHHHhhHHHHHHHH Confidence 554432 344477889999999999999999865 54233333321 12223334444445554443 Q ss_pred HH-HHHHhhC---------------------------Cc----ceeccc---cccCCCCC Q lcl|Aclame:pro 320 IR-EINGWLG---------------------------QE----VIRFKN---YSLDTDNG 344 (344) Q Consensus 320 ie-eln~~L~---------------------------~~----~~~f~~---y~l~~~~~ 344 (344) .- .-+++.. .+ ..-|.+ |+|.+.|| T Consensus 396 eGiDp~kYvvW~DaS~Lt~dPd~~deA~~a~drGAIt~eAlrk~lGf~eD~~yd~tt~E~ 455 (629) T protein:vir:99 396 EGIDPNAYVVWHDASQLTVDPDKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEG 455 (629) T ss_pred hCCCHHHhEeeecCcccccCCCCcHHHHHHHHcCCccHHHHHHHhcCccccccCCCchHH Confidence 21 1111110 00 011333 55555555 No 187 >protein:vir:7987 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817341;genbank:gi:29565769;genbank:GeneID:1258964 Probab=40.76 E-value=0.96 Score=20.69 Aligned_cols=295 Identities=11% Similarity=0.036 Sum_probs=94.6 Q ss_pred CCCCCCCCCCC-chhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQP-AAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVK 79 (344) Q Consensus 1 msk~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~ 79 (344) .-|..-+.... .+..... .+...+.. ..--+|.. ..+-..-.|+....-. ... +... T Consensus 32 ~g~~~i~~~~~~~~~~~~~----------~~~~~~~n--~~~~ivd~-~~~~l~~~g~~~~~~~-----d~~----~~~~ 89 (456) T protein:vir:79 32 NGDAPLPELTRNTSAAWRS----------FQREARTN--WGLMVRDS-VADRIIPNGITVGGSA-----DSD----LALR 89 (456) T ss_pred hccCChhhcCcccChhhch----------hhhhhhcc--hHHHHHHH-HHhhhccCCeecCCCC-----Ccc----HHHH Confidence 11110000000 0000000 00000000 00111111 0111111122110000 000 0000 Q ss_pred hhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---------eEEEEcCC- Q lcl|Aclame:pro 80 RNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPSF- 149 (344) Q Consensus 80 ~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---------~~y~~~~~- 149 (344) .... ..-|.+. .....+..+.+.+|.||+.+.++.+|.+ .+..++|..+.+..+.. .+|...++ T Consensus 90 ~~~~---~~~n~~d--~~~~~~~~~a~~~G~a~~~~~~~edg~~-~i~~~~p~~~~~i~d~~~~~~~~~~~~~~~~~d~~ 163 (456) T protein:vir:79 90 ARRI---WRDNRMD--SVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRSAMRWWRDLDAE 163 (456) T ss_pred HHHH---HHhcChh--HHHHHHHHHHhhcCeeEEEEeeCCCCce-EEEEeccceeEEEEcCCCCCceEEEEEEEEecCCc Confidence 0000 0112111 2234567788999999999998888876 47777776654432211 01111111 Q ss_pred ----------ceEEE----------------------EecccEEEecCCCC---CCCccccccchhhHHHHHHHHHHHHH Q lcl|Aclame:pro 150 ----------NEPTA----------------------FAPGSVFHLLEPDI---NQELYGLPEYLSALNSAWLNESATLF 194 (344) Q Consensus 150 ----------~~~~~----------------------~~~~eViH~r~~~~---~~~~~G~sp~~~~~~~i~~~~aa~~~ 194 (344) +.... ....++-|.-...| .....|+|-+......+.....+..- T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~~~gd~e~v~~liD~~~~~~s~ 243 (456) T protein:vir:79 164 SDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQ 243 (456) T ss_pred eeEEEEEcCCceEEEEEEEEeeccccceeeeccCCceeecccccCCCCceeEEEecCCCCCchhhhhHHHHHHHHHHHHH Confidence 00000 00001111100000 01123555555443333222211111 Q ss_pred HHHHHHhcCCCceEEEeCCCCCC----HHHHHHH--HHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHH Q lcl|Aclame:pro 195 RRKYYENGAHAGYIMYVTDAVQD----RNDIEML--RENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFN 268 (344) Q Consensus 195 ~~~~f~ng~~p~gil~~~~~~l~----~e~~~~l--k~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e 268 (344) ........+.|--++. +...+ ++.-+.+ .+.|.... +.++.+. ++.++..+....- ..+++ T Consensus 244 ~~~~~~~~a~~~~~~~--G~~~~~~~~d~~g~~i~~~~~~~~~~-----~~~~~~~-----~~~~~~q~~~~~~-~~~~~ 310 (456) T protein:vir:79 244 LLSTMAIQAFRQRALK--SSEHRLPKVDENGNAIDYASIFEAAP-----GALWELP-----PGVDIWESQTNDF-TPMLS 310 (456) T ss_pred HHHHHHHHhhHHHHHh--cCCcccccccccccccchhhhhhhhc-----cccccCC-----CCcceeeecccCh-HHHHH Confidence 1112222222222221 11111 1111111 12222211 2333332 2334444432221 22888 Q ss_pred HHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHH--------HHHHhh----CCcceeccc Q lcl|Aclame:pro 269 IKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIR--------EINGWL----GQEVIRFKN 336 (344) Q Consensus 269 ~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie--------eln~~L----~~~~~~f~~ 336 (344) ..+....+|++.=++|++.+|.... +.++..++.... .|.=.+...+ ++-+.+ |.. .... T Consensus 311 ~l~~~i~~i~~~t~~p~~~~~~~~~-N~Sg~Al~~~~~-----~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~--~~~~ 382 (456) T protein:vir:79 311 AIKEHIRQLSSATKTPLPMLMPDSA-NQSAEGAHNIEK-----GFLFKCEDRLSIAKIGLEAILVKALQIEGES--VEDT 382 (456) T ss_pred HHHHHHHHHHhhcCCChhHhccccc-CcHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cccc Confidence 8999999999999999999986422 222222222211 1111111111 111111 110 0011 Q ss_pred cccCCCCC Q lcl|Aclame:pro 337 YSLDTDNG 344 (344) Q Consensus 337 y~l~~~~~ 344 (344) .+..+.+. T Consensus 383 i~v~w~~~ 390 (456) T protein:vir:79 383 VDVSFESP 390 (456) T ss_pred ceEEeCCC Confidence 12222222 No 188 >protein:vir:106491 Length: 646 # NCBI annotation: Pas4 # Family: family:all:2798 # MgeID: mge:1680 # MgeName: phiAsp2 # Cross-refs: genbank:acc:YP_024790;genbank:gi:48697405;genbank:GeneID:2846148 Probab=39.91 E-value=1 Score=20.59 Aligned_cols=334 Identities=14% Similarity=0.040 Sum_probs=142.3 Q ss_pred CCCCCCCCCCCchh--h---------ccccc-cceEEE--EcCCcc-ccccc--------hhHHHHhhhhhcCcceeccc Q lcl|Aclame:pro 1 MSKKKGKTLQPAAK--K---------MTASA-PKMEAF--TFGEPV-PVLDR--------RDILDYVECISNGRWYEPPI 57 (344) Q Consensus 1 msk~~~~~~~~~~~--~---------~~~~~-~~~~~~--~~~~p~-~~~~~--------~~v~~~~~~~~~~~~~~~p~ 57 (344) |..-|.|-..+++- . +++.. .+...+ +...+. .+... +.+--|++-+.++.- ..-+ T Consensus 1 ~~~~rPk~~p~~p~~~~~arrr~LtaAsa~l~~~~~~~~kt~~~~~~~WQ~eAW~~~d~vpELry~vgW~~~a~S-R~rL 79 (646) T protein:vir:10 1 MALLKPKSAPPEPFGAEVARRIALAGATAQVDLGASSSWKTWKFGNKDWQTEGWRLYDIIPEHHFLAGRIGDSVA-QARL 79 (646) T ss_pred CcccCCCCCCCCcccccccchhhhhhccccccCCCcceeecCCCcchhhhHHHHHHHhhhhhHhhHhhhhhhhhc-eeee Confidence 65444332222100 0 00000 000011 111110 00000 111111111111110 0000 Q ss_pred cHHHHHHHhhcchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEE---ECCCCceEEEEEecCcce Q lcl|Aclame:pro 58 SFTGLAKSLRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKR---YSTTGKVIRLETSPAKYT 134 (344) Q Consensus 58 ~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~---r~~~G~~~~L~pl~~~~v 134 (344) ....+...-..+ +.+-..+........-.....-.+.++.+..++.+-|..|+... ....+---..+++....| T Consensus 80 ~aseiddtG~~t---g~v~~~~v~~iv~~~~Gg~~gQ~qlLkr~~~~ltV~GE~wiv~~~~~~~~~~~~~~W~vvt~~Ev 156 (646) T protein:vir:10 80 YVTEVDDTGEET---GEVQDERIKRLAAVPLGTGSQRDDNLRLAGLDLAVGGECWIVGEGAATSPEAAEGSWFVVTGSAI 156 (646) T ss_pred eeeeecCCCCCc---CccchHHHHHHhhhhccchhhHHHHHHHHHhheecccceEEeeccccCCCCCCccceeeecHHHh Confidence 000111100000 00001111111111111122223556777788889999998631 111121223555555555 Q ss_pred eccccCceEEEEcC----CceEEEEecccEEEec--CCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceE Q lcl|Aclame:pro 135 RRGVEEDVYWWVPS----FNEPTAFAPGSVFHLL--EPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYI 208 (344) Q Consensus 135 ~~~~~~~~~y~~~~----~~~~~~~~~~eViH~r--~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gi 208 (344) .. .++.+-.... ++.....+..||+ || .+.+..-..--||+.+++.++.-..-..+..++--+.-.+-.|| T Consensus 157 ~~--tg~~~~i~~p~~~~g~~~v~~~~~d~l-vRiW~P~Prr~~epDSpvra~l~~l~Ei~~lt~~I~aaakSRL~GnGv 233 (646) T protein:vir:10 157 SR--TGDEIAVRRPQQRGGSKLVLVDGQDIL-IRCWRPHPNDTDQADSFTRSAIVPLREIELLTKREFAELDSRLTGAGI 233 (646) T ss_pred cc--CCCeeeeecCccCCCCCcceecCCceE-EEEecCCcccccCCcchhHHHHHHHHHHHHhhhHhHHHHHHHHhcCce Confidence 33 2333322222 2333344555663 35 45556666788999999999888888888777777777777888 Q ss_pred EEeCCCC------CCHHHHHHHHHHHHH----h---hccccccccccccCCCcccc--ceeeecccch-hHHHHHHHHhh Q lcl|Aclame:pro 209 MYVTDAV------QDRNDIEMLRENMVK----S---KGRNNFKNLFLYAPQGKADG--IKIIPLSEVA-TKDDFFNIKKA 272 (344) Q Consensus 209 l~~~~~~------l~~e~~~~lk~~~~~----~---~g~~n~~~~~vl~~~~~~~g--l~~~pl~~~~-~d~q~~e~~~~ 272 (344) |-+|+.. -++-..+.|.+.+-+ . .+...+--++|+...+...+ -+++.+.... -+.--+.+|+- T Consensus 234 LfvP~e~s~p~~~~~~a~~~~l~~~l~qaa~tAi~De~S~aA~vPiia~~P~E~i~~~~~ik~l~f~~eite~aiktR~d 313 (646) T protein:vir:10 234 MFLPEGVDFPRGEEDPAGLAGFMAYLQRAAAASMADQSRASAMVPIMATIPNEMMEHLDKIKPLTFWSELSAEITPMKDK 313 (646) T ss_pred eeeccccccCCCCCCCcchhHHHHHHHHHHHhhhcCCCCccceeeeEEeeChHHHhhhhcceeeccCchhhHHHhhhHHH Confidence 8776421 122233444444421 1 12233334444433221000 1233333322 23446788999 Q ss_pred hHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHH-HHHHh-h-------CC-c----ceeccccc Q lcl|Aclame:pro 273 SAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIR-EINGW-L-------GQ-E----VIRFKNYS 338 (344) Q Consensus 273 ~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie-eln~~-L-------~~-~----~~~f~~y~ 338 (344) .+..||...-|||..|=...+.+-|.+ =+....=++ -|.|.+..|. .|.+. | |. + ++=|+.-. T Consensus 314 aI~RlA~glDIppE~LLGlgd~NHWtA--WqI~de~vr-HI~P~l~~ic~AlT~~~Lrp~Le~eGi~dp~kyvvW~DaS~ 390 (646) T protein:vir:10 314 AIARLASSAEIPGEVLTGIGDANHWTA--WLISDEGIR-WIRGYLGLIADALTRGFLRRALESMGVTNPERYAFAFDTST 390 (646) T ss_pred HHHHHHhccCCchhheeeccccceeee--eeeccccch-hhhhHHHHHHHHHHhhHHHHHHHHcCCCChhHeEEeecCcc Confidence 999999999999987533333333322 111112233 3777777664 34332 1 32 1 12233333 Q ss_pred cCCCCC Q lcl|Aclame:pro 339 LDTDNG 344 (344) Q Consensus 339 l~~~~~ 344 (344) |-.+-- T Consensus 391 Lt~~pd 396 (646) T protein:vir:10 391 LASKPN 396 (646) T ss_pred cccCCC Confidence 332222 No 189 >protein:vir:3648 Length: 695 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705643;genbank:gi:23752328;genbank:GeneID:955749 Probab=38.46 E-value=1.1 Score=20.43 Aligned_cols=325 Identities=12% Similarity=0.082 Sum_probs=118.3 Q ss_pred CCCCCCCCCCCchhhcccccc---ceEEEE----cCCccccccc---------hhHHHHhhhhhc-C-cce-------ec Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAP---KMEAFT----FGEPVPVLDR---------RDILDYVECISN-G-RWY-------EP 55 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~---~~~~~~----~~~p~~~~~~---------~~v~~~~~~~~~-~-~~~-------~~ 55 (344) ...|..-..-. .+....+.| -...|. .+.| .-.+ ++.++.+....+ + ..| .. T Consensus 46 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~~la~laQ~ 122 (695) T protein:vir:36 46 FARRGALNALD-AAPVVEPSPSLRLARQFEVDVSNYTP--RERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQL 122 (695) T ss_pred hhhcccccccc-cccccCCCcccccceeceecccccCc--cccchhhhhhcccccccccchhhhccCcchHHHHHHHhhc Confidence 11111110000 000000000 011111 1111 1111 111111100000 0 000 00 Q ss_pred cccHHHHHH----Hhhcchhhhhhhhhhhhh--H----------------HHhcccCCCCCHHHHHHHHHHHHhcCCeEE Q lcl|Aclame:pro 56 PISFTGLAK----SLRAAVHHSSPIYVKRNI--L----------------ASTFIPHPWLSQQDFSRFVLDFLVFGNAFL 113 (344) Q Consensus 56 p~~~~~l~~----~~~~~~~~~~~i~~~~~~--~----------------~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~ 113 (344) |........ ..|.-......+..+... + .+...-..+--+..|.+.+..--++|-+.+ T Consensus 123 ~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqik~L~~e~erL~V~~~l~eaik~aRlfGGa~~ 202 (695) T protein:vir:36 123 PEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHP 202 (695) T ss_pred cchhhHHHHHHHHhhcccceecccchhhhhhccccccccccccCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccceEE Confidence 100000000 000000000000000000 0 000000001111223333333347787765 Q ss_pred EEEECC-----------------CCceEEEEEecCcceeccccC-----------ceEEEEcCCceEEEEecccEEEecC Q lcl|Aclame:pro 114 EKRYST-----------------TGKVIRLETSPAKYTRRGVEE-----------DVYWWVPSFNEPTAFAPGSVFHLLE 165 (344) Q Consensus 114 ~i~r~~-----------------~G~~~~L~pl~~~~v~~~~~~-----------~~~y~~~~~~~~~~~~~~eViH~r~ 165 (344) ++.-.+ .|..++|..++++++.+.... ..||++. |. .+.++-++.|.. T Consensus 203 ~i~i~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~--G~--kIH~SRL~~f~g 278 (695) T protein:vir:36 203 YFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--GT--EVHATRLHTIVS 278 (695) T ss_pred EEEeccCccccccccccccccccCcceeeeEeecccccccchhhhccchhhccCCCceEEEe--ce--EEeeeeEEEecC Confidence 553322 356667888999888764321 1245553 22 344455544443 Q ss_pred CCC------CCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCC-CCCCHHHHHHHH---HHHHHhhccc Q lcl|Aclame:pro 166 PDI------NQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTD-AVQDRNDIEMLR---ENMVKSKGRN 235 (344) Q Consensus 166 ~~~------~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~-~~l~~e~~~~lk---~~~~~~~g~~ 235 (344) ... ...+.|+|..+.+.+.+.....+......+.+. .+..++ ++.- ..+.......+. +.++.++ + T Consensus 279 ~plPd~LKp~y~~~GiSv~q~~~e~V~~~~rT~~~v~~Li~~-~~v~~l-k~dla~aL~~g~~~~l~~R~eli~~~R--s 354 (695) T protein:vir:36 279 RPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQ-FSVSGI-LMDLAQALMPGANVDLSMRAELINRYR--D 354 (695) T ss_pred CCchhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHHHHHh-hhHHHH-HHHHHHhhcChhHHHHHHHHHHHHHhc--C Confidence 211 123569999998888877766666655555543 223322 1110 112222222222 3334444 3 Q ss_pred cccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHH----- Q lcl|Aclame:pro 236 NFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVR----- 310 (344) Q Consensus 236 n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~----- 310 (344) |.+ +.+++. +.-+|...+.+... +-+......+.||.+-+||..+|=..+..+- .++-|...+.||. T Consensus 355 n~G-~~llDk----~~Eefeq~stslSG--LddVi~qf~q~VAgaa~IPltkLfGqSPkGl-NATGE~D~rnYYD~I~s~ 426 (695) T protein:vir:36 355 NRN-ILFLDK----ATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGL-NASSEGEIRVWYDYVRAY 426 (695) T ss_pred ccc-eEEEec----CCcceEEEecccCC--HHHHHHHHHHHHHhhhcCchhhhhccCcccc-cccchhhHHHHHHHHHHH Confidence 444 445542 12245554433322 2223334557799999999988643332211 1344555566654 Q ss_pred --HHHHHHHHHHHH-HHHh-hCCc--ceecccccc-CCCCC Q lcl|Aclame:pro 311 --NELIPLQDRIRE-INGW-LGQE--VIRFKNYSL-DTDNG 344 (344) Q Consensus 311 --~~l~P~~~~iee-ln~~-L~~~--~~~f~~y~l-~~~~~ 344 (344) ..|.|.++++-+ |-+- +|.- .+.|...-| +.+|- T Consensus 427 Qe~~L~p~L~rl~~ii~rS~~G~idpdi~~~fnPL~qmtd~ 467 (695) T protein:vir:36 427 QRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDL 467 (695) T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCcCHH Confidence 356676665433 2222 2321 122211111 12222 No 190 >protein:vir:95113 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240817;genbank:gi:66394677;genbank:GeneID:5133907 Probab=38.17 E-value=1.1 Score=20.40 Aligned_cols=292 Identities=9% Similarity=0.030 Sum_probs=105.7 Q ss_pred CC-----CCCCCCCCCchhhccccccceEEEEcCCccccccchhHHH-HhhhhhcCcceeccccHHHHHHHhhcchhhhh Q lcl|Aclame:pro 1 MS-----KKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILD-YVECISNGRWYEPPISFTGLAKSLRAAVHHSS 74 (344) Q Consensus 1 ms-----k~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~-~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~ 74 (344) +. +|+.+....... ....+.. -+.. .+.. .+.. ..+-....|+.+.. . +. T Consensus 54 ~g~~~i~~r~~~~~~~~~~--~~~~~~~----------ki~~-n~~~~Ivd~-~~~~l~g~p~~~~~-~-----d~---- 109 (474) T protein:vir:95 54 DKDNDIVKQMKKVDVYGNI--DYDKPDW----------RITT-NFHQNLVDQ-KVSYVASKPVTYSC-E-----DE---- 109 (474) T ss_pred cccCchhcccccccccccc--ccccccc----------eecc-chHHHHHHH-HHhhhccCCceecc-C-----ch---- Confidence 11 111110000000 0000000 0000 0111 1110 01111112222100 0 00 Q ss_pred hhhhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---------eEEE Q lcl|Aclame:pro 75 PIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWW 145 (344) Q Consensus 75 ~i~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---------~~y~ 145 (344) .....+-...-|.+ ...+..+..+.+.+|.+|..+.++.+|++ .+..++|..+-+..+.. ++|. T Consensus 110 ----~~~~~l~~~~~n~~--~~~~~e~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~~~i~~~~ 182 (474) T protein:vir:95 110 ----SVLKIIHDVLDTRW--DNKLIDILTATSNKGIDWLQVYINENGEM-KLFRVPAEQAIPIWVDKEREELKSFIRYYK 182 (474) T ss_pred ----HHHHHHHHHHhccH--HHHHHHHHHHHhhcCcEEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEE Confidence 00001111111221 23355667788999999999999888865 46666666554332211 1222 Q ss_pred EcCCceEEEEecccEEEecCCC--------------------------C----CCCccccccchhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 146 VPSFNEPTAFAPGSVFHLLEPD--------------------------I----NQELYGLPEYLSALNSAWLNESATLFR 195 (344) Q Consensus 146 ~~~~~~~~~~~~~eViH~r~~~--------------------------~----~~~~~G~sp~~~~~~~i~~~~aa~~~~ 195 (344) .........+..+.|.+++... | .+...|.|-+......+..-..+..-. T Consensus 183 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~ 262 (474) T protein:vir:95 183 FNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHIQSHFSNGNWGRVPFIAFKNNPEEVSDIWMYKSLIDAIDKRLSDA 262 (474) T ss_pred EcCeeEEEEEeCCeEEEEEEcCCccccccccCcccccccccccCCCccceEeecCCCCCCCcHHHHHHHHHHHHHHHHHH Confidence 1111111222223332221000 0 011236666655555554433333333 Q ss_pred HHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHH Q lcl|Aclame:pro 196 RKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAA 275 (344) Q Consensus 196 ~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~ 275 (344) .+.+...+.|-.++ ++...++ .+.+.... ...+++.+.+++ ++++ ++.......+.+..+...+ T Consensus 263 ~~~~~~~~~p~lv~--~g~~~~~--~~~~~~~~-------~~~~~i~~~~~~---~~~~--l~~~~~~~~~~~~~~~l~~ 326 (474) T protein:vir:95 263 QNMFDESVELIYIL--KGYEGQD--LEEFMRGL-------KYYKAINVDGDG---GVET--IQVEVPVSSTKEYIDLMRA 326 (474) T ss_pred HHHHHHhcCceeee--ecCCccc--chhhhhhh-------hccceeeccCCC---ceeE--EeecCCHHHHHHHHHHHHH Confidence 44445556664444 4533322 11111111 223344444332 3333 3334455667777788889 Q ss_pred HHHHHhcCCHHHhccccccccccccHHHHH----------HHHHHHHHHHHHHHHHHHHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 276 DLLDAHRIPFQLMGGKPENVGSLGDIEKVA----------KVFVRNELIPLQDRIREINGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 276 ~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~----------~~f~~~~l~P~~~~ieeln~~L~~~~~~f~~y~l~~~~~ 344 (344) .|+..-++|..--+-. +++.++..++... ...+...|.-.++.| ...+|.+. ....-++.|+++ T Consensus 327 ~i~~~s~~p~~~~~~~-~~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li---~~~~g~~~-d~~~i~v~f~~~ 400 (474) T protein:vir:95 327 YIMEFGQGVDFQTDKF-GSAPSGIALKFLYGNLDLKANKLKNKATVAIQELIGFI---IDFNNLKM-DVKDIEISFNFN 400 (474) T ss_pred HHHHHhCCcccccccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCCc-ccceeeEEeccC Confidence 9999999996332211 1111111111110 111222222222222 22233321 111223344444 No 191 >protein:vir:38 Length: 496 # NCBI annotation: putative portal protein # Family: family:all:898 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463464;swissprot:trembl:q9t1c0;genbank:gi:16798786;uniprot:Q9T1C0;genbank:GeneID:922383 Probab=32.87 E-value=1.4 Score=19.79 Aligned_cols=300 Identities=9% Similarity=0.090 Sum_probs=112.4 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) ..+++........+ ....+ +..+-.. +... ++-...-|+.+. +.. . .. T Consensus 55 ~~~~~~~~~~~~~~--------~~~~~-------~n~~k~i--~~~~-a~~l~~~p~~i~-~~d--------~-----~~ 102 (496) T protein:vir:38 55 WHNLNYEHNGNPVN--------RRQLS-------MNLPKVT--AKYM-SKLLFNEKVKIN-IDD--------K-----AA 102 (496) T ss_pred hhcchhccCCCccc--------cceee-------cchHHHH--HHHH-hhhhhCCcceEe-eCC--------h-----HH Confidence 22222111000000 00001 1111000 0000 111111111110 000 0 00 Q ss_pred hhHHH-hcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceecc-----------------ccCce Q lcl|Aclame:pro 81 NILAS-TFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRG-----------------VEEDV 142 (344) Q Consensus 81 ~~~~~-~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~-----------------~~~~~ 142 (344) +..+. ....| --...+..++.+.+..|.+|+.+..|.+|++ .+..++|..+-+. .++.. T Consensus 103 ~e~l~~~~~~n--~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~-~i~~v~~~~~~P~~~~~~~~~~~~f~~~~~~~~~~ 179 (496) T protein:vir:38 103 EEFVLNVLKTN--GFTKNMERYIEYGEAMGGFVIKVYHDGNKNV-KVSFATADCMYPLSNDSENVDECVIANSFHKNNKY 179 (496) T ss_pred HHHHHHHHhcc--CHHHHHHHHHHHHhhhCcEEEEEEEcCCCcE-EEEEEcccceEEEEecCCcEEEEEEEEEEEeCCeE Confidence 00000 00001 0123456677888999999999999887764 3444444433221 11111 Q ss_pred EEEEc----CC------------------ceEEEE-------ecc------c---EEEecCCCC----CCCccccccchh Q lcl|Aclame:pro 143 YWWVP----SF------------------NEPTAF-------APG------S---VFHLLEPDI----NQELYGLPEYLS 180 (344) Q Consensus 143 ~y~~~----~~------------------~~~~~~-------~~~------e---ViH~r~~~~----~~~~~G~sp~~~ 180 (344) |+.+. .+ |..+.+ .+. + +.|++.+-+ .+..+|+|.+.. T Consensus 180 y~~le~h~~~~~~~~I~~~~y~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~N~~~~~~p~G~Sd~~~ 259 (496) T protein:vir:38 180 YTLLEWNEWQGDVYTVTTELYQSDDPNELGTKVSLTLLFDDIEPVVPLPDFTRPTFIYIKPNIANNKNLTSPLGISVYAN 259 (496) T ss_pred EEEEEEEEEeCceEEEEEEEEecCCccccCccccccccccccccceeecCCCcceEEEecCCcccccccCCcCCCchHhh Confidence 11110 00 000000 000 0 234443321 123568999888 Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCH---HHHHHHHHHHHHhhccccccccccccCCCccccceeeec Q lcl|Aclame:pro 181 ALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDR---NDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPL 257 (344) Q Consensus 181 ~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~---e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl 257 (344) +...+.....+..-..+-|+.| .+..++ +...+.. ..-+.. ..+. .+-...........+.+-.++.+ T Consensus 260 ~~~lid~ld~~~s~~~~~~~~~-~~~i~v--~~~~l~~~~~~~g~~~-~~~~-----~~~~~~~~~~~~~~~~~~~i~~~ 330 (496) T protein:vir:38 260 ALDTLKTLDLMFDSYYQEFKLG-KKKVLV--PSSFVKTAVNLDGSTT-QYFD-----STDEAFFLYQGDQDDNGKAIKDI 330 (496) T ss_pred HHHHHHHHHHHHHHHHHHHhhc-ccceec--chHHhhccCCCCCccc-cCCC-----CccceEEEeecCCCcccccceee Confidence 7776655443333333345554 333222 2111100 000000 0000 00000011111111222235555 Q ss_pred ccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHH----------HHHHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 258 SEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVA----------KVFVRNELIPLQDRIREINGWL 327 (344) Q Consensus 258 ~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~----------~~f~~~~l~P~~~~ieeln~~L 327 (344) +......++.+..+....+|+..-|+||..+|....+..|...+.... ...++..|..+++.+-++-..+ T Consensus 331 ~~~i~~e~~~~~l~~~l~~i~~~~g~~~~~f~~~~~g~~tAtei~~~~~~l~~~~~~~~~~~~~~l~~l~~~il~~~~~~ 410 (496) T protein:vir:38 331 SVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVVSEKSETYQTKNSHSQLIEQGIKEMIVSILEVGKFI 410 (496) T ss_pred ccccCHHHHHHHHHHHHHHHHHhhCCChhhcCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 555566778888888889999999999999997543332222221111 1122233444433333322211 Q ss_pred ---CCcceeccccccCCCCC Q lcl|Aclame:pro 328 ---GQEVIRFKNYSLDTDNG 344 (344) Q Consensus 328 ---~~~~~~f~~y~l~~~~~ 344 (344) +...+.-..-.+.|+++ T Consensus 411 ~~~~g~~~~~~~i~v~f~d~ 430 (496) T protein:vir:38 411 EAYSGEVVELDTITVDFDDS 430 (496) T ss_pred HhhcCCCCCccceEEEeCCC Confidence 11111112234556666 No 192 >protein:vir:96179 Length: 468 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240075;genbank:gi:66395736;genbank:GeneID:5133166 Probab=32.56 E-value=1.4 Score=19.76 Aligned_cols=292 Identities=8% Similarity=0.040 Sum_probs=102.3 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) +.++.+.......... . |..-+.. .+...+--...+-....|+.+.. .+. .. T Consensus 59 ~~~~~~~~~~~~~~~~---~----------~~~ki~~-n~~~~Iv~~~~~~l~g~p~~~~~------~d~--------~~ 110 (468) T protein:vir:96 59 LFNAPKRNVKGEIDPF---K----------PDWRMYT-NYHQNLVDQKVAYAVANPVTYGT------EDE--------KS 110 (468) T ss_pred cccccccccccccccc---c----------ccccccc-chHHHHHHHHHhhhccCCceecc------CCh--------HH Confidence 2222111111000000 0 0000000 01111100001111112222100 000 00 Q ss_pred hhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccC----c-----eEEEEcCCce Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEE----D-----VYWWVPSFNE 151 (344) Q Consensus 81 ~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~----~-----~~y~~~~~~~ 151 (344) ...+.....|.+ ...+..++.+.+.+|.+|..+..+.+|++ .+..++|..+.+..+. . ++|....... T Consensus 111 ~~~l~~~~~n~~--~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~v~~~~~~~~~~~~ir~~~~~~~~~ 187 (468) T protein:vir:96 111 LKTIQEVLNHKW--DDKLVDILTAASNKGVEWIQPYVDEQGEF-KTFRVPAEQAIPIWTNKERDELKAFIRLYELDGGER 187 (468) T ss_pred HHHHHHHHhcCH--HHHHHHHHHHHhhcCeEEEEEEEcCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEecCceE Confidence 111111111221 22345567788999999999999887764 4666666655433211 1 1122211111 Q ss_pred EEEEecccEEEecCCC------------------------------C----CCCccccccchhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 152 PTAFAPGSVFHLLEPD------------------------------I----NQELYGLPEYLSALNSAWLNESATLFRRK 197 (344) Q Consensus 152 ~~~~~~~eViH~r~~~------------------------------~----~~~~~G~sp~~~~~~~i~~~~aa~~~~~~ 197 (344) ...+.++.|.|++..+ | .+...|.|-+......+..-..+..-..+ T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPvv~~~n~~~g~sd~e~v~~liDa~d~~~S~~~~ 267 (468) T protein:vir:96 188 VEYWTANDVTFYELKDGQLIPDYYQGEEHVQAHYYVGNKSMSWNRVPFIPFKNNPQEVSDLFMYKTIIDAMDKRLSDTQN 267 (468) T ss_pred EEEEeCCeEEEEEEcCCceeecccccccccccceeeccccccCCcccEEEecCCCCCCCchHHHHHHHHHHHHHHHHHHH Confidence 1112222222221100 0 01123666655544444443333333344 Q ss_pred HHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHH Q lcl|Aclame:pro 198 YYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADL 277 (344) Q Consensus 198 ~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~I 277 (344) .++..+.|-.+ +++..+++ .......+ . . .+++.+.+.. ..++++.. .......+.+..+.-.+.| T Consensus 268 ~~~~~~~p~lv--~~g~~~~~--~~~~~~~~---~---~-~~~i~~~~d~-~~~~~~l~--~~~~~~~~~~~~~~l~~~I 333 (468) T protein:vir:96 268 TFDEATELIYV--LKGYEGED--LEEFMYNL---K---Y-YKAINVDGDG-SGGVDTIQ--IDVPVQSAKEYLDMLRDYV 333 (468) T ss_pred HHHHhcCceee--eecCCccc--cchhhhhh---h---c-CceEEecCCC-CCcceEEe--ecCChHHHHHHHHHHHHHH Confidence 45555666444 44543322 11111111 1 1 2333333211 12344443 3334455666677778889 Q ss_pred HHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHH--------HHHH----HHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 278 LDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQD--------RIRE----INGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 278 a~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~--------~iee----ln~~L~~~~~~f~~y~l~~~~~ 344 (344) ...-++|...-+-. + +|.....+.+.-..+.=.+. .|++ +...+|.+. ....-++.|++. T Consensus 334 ~~~s~~p~~~~~~~-~-----~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~g~~~-d~~~i~i~f~~~ 405 (468) T protein:vir:96 334 IEFGQGVDFQQDKF-G-----NSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYKLSI-KVQDVEITFNFN 405 (468) T ss_pred HHHhCccccccccc-c-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-ccceeeEEecCC Confidence 99989985432111 1 12222211111111111111 1111 122233321 111223334444 No 193 >protein:vir:107112 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950601;genbank:gi:119953681;genbank:GeneID:4643121 Probab=31.94 E-value=1.5 Score=19.68 Aligned_cols=292 Identities=9% Similarity=0.046 Sum_probs=102.0 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~~ 80 (344) +.++.+....... ..+.+.. -+.. .+...+--...+-....|+.+.. .+. .. T Consensus 59 ~~~~~~~~~~~~~---~~~~~~~----------ki~~-n~~k~ivd~~~~yl~g~p~~~~~------~~~--------~~ 110 (478) T protein:vir:10 59 LDAPFKRDVNGDY---DETKPDW----------RMYT-NYHQNLVDQKVAYAVANPVTFGV------DND--------KA 110 (478) T ss_pred cccchhhhccccc---ccccccc----------eecc-chHHHHHHHHhhhhcccCceeec------CCh--------HH Confidence 1111111000000 0000000 0000 01111100011111112222100 000 00 Q ss_pred hhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccC----c-----eEEEEcCCce Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEE----D-----VYWWVPSFNE 151 (344) Q Consensus 81 ~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~----~-----~~y~~~~~~~ 151 (344) ...+.....|.+ ...+..+..+.+.+|.+|+.+..+.+|++ .+..++|..+.+..+. . ++|...+... T Consensus 111 ~~~l~~~~~n~~--~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~~~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~ 187 (478) T protein:vir:10 111 LKQIQHTLNHKW--DDKLVDILTAASNKGIEWVQPYVDEEGEF-KTFRVPAEQAVPIWTNKERDELQAFIRVYELDGAER 187 (478) T ss_pred HHHHHHHHhccH--HHHHHHHHHHHhhCCeEEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEeeeCceE Confidence 111111111221 23345566788899999999999887764 4666777665433221 1 1222211111 Q ss_pred EEEEecccEEEecCCC------------------------------C----CCCccccccchhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 152 PTAFAPGSVFHLLEPD------------------------------I----NQELYGLPEYLSALNSAWLNESATLFRRK 197 (344) Q Consensus 152 ~~~~~~~eViH~r~~~------------------------------~----~~~~~G~sp~~~~~~~i~~~~aa~~~~~~ 197 (344) ...+.++.|.+++... | .+.-.|.|.+......+..-..+..-..+ T Consensus 188 ~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liDa~~~~~S~~~~ 267 (478) T protein:vir:10 188 VEYWTKDDVTFYELKEGQLIPDFYRSEDHIQPHYYQGNKLMSWGRVPFIPFKNNPQEVSDLFMYKTIIDALDKRLSDTQN 267 (478) T ss_pred EEEEeCCcEEEEEecCCeeeccccccccccccceecccccccCCcceEEEeccCCCCCCcHHHHHHHHHHHHHHHHHHHH Confidence 1122333333221100 0 00123566555544444433333222333 Q ss_pred HHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHH Q lcl|Aclame:pro 198 YYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADL 277 (344) Q Consensus 198 ~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~I 277 (344) .+...+.|-.+ +++...++ .......++. .+++.+.++ ...++++. ........+.+..+.-.+.| T Consensus 268 ~~~~~~~~~~~--~~g~~~~~--~~~~~~~~~~-------~~~~~~~~~-~~~~~~~l--~~~~~~~~~~~~~~~l~~~I 333 (478) T protein:vir:10 268 TFDESVELIYI--LKGYEGED--MKDFMHNLKY-------YKAISVAGE-SGSGVDTI--KVEVPIDSVKEYTKMLRDYI 333 (478) T ss_pred HHHHhhCccee--eecCCccc--ccchhhhhhh-------CceeEecCC-CCCcceEE--eecCCHHHHHHHHHHHHHHH Confidence 33444445333 44433222 1111111111 122223221 11234443 33445566777788888899 Q ss_pred HHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHH----H----HH----HHHhhCCcceeccccccCCCCC Q lcl|Aclame:pro 278 LDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDR----I----RE----INGWLGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 278 a~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~----i----ee----ln~~L~~~~~~f~~y~l~~~~~ 344 (344) ...-++|..-.+-. + +|.....+.+.-..+.=.+.. + .+ +...++.+ +....-++.|.++ T Consensus 334 ~~~s~~p~~~~~~~-~-----~n~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~-~d~~~i~i~f~~~ 405 (478) T protein:vir:10 334 IEFGQGVDFQQDKF-G-----NSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYRLD-VRVQDIEITFNFN 405 (478) T ss_pred HHHhCCcCcCcccc-c-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cccccceEEeCCC Confidence 99999985432211 1 122222222221111111111 1 11 12222322 1111223444444 No 194 >protein:vir:103951 Length: 511 # NCBI annotation: phage portal protein # Family: family:all:125 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873988;genbank:gi:118430763;genbank:GeneID:4525445 Probab=31.40 E-value=1.5 Score=19.62 Aligned_cols=312 Identities=12% Similarity=0.013 Sum_probs=109.6 Q ss_pred CCCCCCCCCCCc-------------hhh-ccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHh Q lcl|Aclame:pro 1 MSKKKGKTLQPA-------------AKK-MTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSL 66 (344) Q Consensus 1 msk~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~ 66 (344) +++.+.+....- ... ........ .+-..+. .+...+--...+-....|+.+.. . T Consensus 49 i~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~-----~~~ki~~---n~~k~Iv~~~~~yl~g~p~~~~~-~--- 116 (511) T protein:vir:10 49 IEHHMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEYM-----ADNRVAH---DYASYISDFINGYFLGNPIQYQD-D--- 116 (511) T ss_pred HHHHHHhhHHHHHHHHHHhcccCccccccCccccccc-----Ccceeec---chHHHHHHHHhhhhcccCceeec-C--- Confidence 111000000000 000 00000000 0000000 01111100011111122222200 0 Q ss_pred hcchhhhhhhhhhhhhHHHh-cccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---- Q lcl|Aclame:pro 67 RAAVHHSSPIYVKRNILAST-FIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---- 141 (344) Q Consensus 67 ~~~~~~~~~i~~~~~~~~~~-~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---- 141 (344) +.. .+..+.. ..-|.+ ...+..+..+.+.+|.+|..+.++.+|++ .+..++|..+.+..+.. T Consensus 117 --d~~--------~~~~l~~~~~~n~~--~~~~~~~~~~~~i~G~ay~~vy~dedg~~-~i~~~~p~~~~~vydd~~~~~ 183 (511) T protein:vir:10 117 --DKD--------VLEAIEAFNDLNDV--ESHNRSLGLDLSIYGKAYEIMIRNQDDET-RLYKSDAMSTFVIYDNTIERN 183 (511) T ss_pred --chH--------HHHHHHHHHhhcCH--HHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCc Confidence 000 0001100 011111 12345567788999999999999988864 56667776654432211 Q ss_pred -----eEEEEcC--C---ceE---EEEecccEEEecCCCC-------------------------CCCccccccchhhHH Q lcl|Aclame:pro 142 -----VYWWVPS--F---NEP---TAFAPGSVFHLLEPDI-------------------------NQELYGLPEYLSALN 183 (344) Q Consensus 142 -----~~y~~~~--~---~~~---~~~~~~eViH~r~~~~-------------------------~~~~~G~sp~~~~~~ 183 (344) +||.... + ... ..+.++.|.++..... .+.-.|.|-+..... T Consensus 184 ~~~~vr~~~~~~~d~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~f~nn~~g~gd~e~v~~ 263 (511) T protein:vir:10 184 SIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVIT 263 (511) T ss_pred eEEEEEEEEeeecccCccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCcceeEEEecCCCCCCCchhhhHH Confidence 1222210 0 000 1233344443321100 001246666665555 Q ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEeCC-CCCCHHHHHHHHHHHH-HhhccccccccccccCCCccccceeeecccch Q lcl|Aclame:pro 184 SAWLNESATLFRRKYYENGAHAGYIMYVTD-AVQDRNDIEMLRENMV-KSKGRNNFKNLFLYAPQGKADGIKIIPLSEVA 261 (344) Q Consensus 184 ~i~~~~aa~~~~~~~f~ng~~p~gil~~~~-~~l~~e~~~~lk~~~~-~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~ 261 (344) .+..-..+..-..+.+...+.|-.++. + ...++++....++..- ............+ ....+.+++.++... T Consensus 264 liDa~d~~~S~~~~~~~~~~~~~lv~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~~~ 337 (511) T protein:vir:10 264 LIDLYDNAESDTANYMSDLNDAMLLIK--GNLNLDPVEVRKQKEANVLFLEPTVYADSEGR----ETEGSVDGGYIYKQY 337 (511) T ss_pred HHHHHHHHHHHHHHHHHHhhCceeeee--ccccCCchhhccchhccceecccccccccccc----cCCCCcceeEEeecC Confidence 555444333333444555556644443 3 2233333322221110 0000000000000 112344555555555 Q ss_pred hHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHH----------HHHHHHHHHHHHHHHHHHHHHhhCCcc Q lcl|Aclame:pro 262 TKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKV----------AKVFVRNELIPLQDRIREINGWLGQEV 331 (344) Q Consensus 262 ~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~----------~~~f~~~~l~P~~~~ieeln~~L~~~~ 331 (344) .+..+....+.-.+.|+..-++|..-.+... ++.++-.++.. ...++...|.=.++.+.++-...+... T Consensus 338 ~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~-~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~~~~ 416 (511) T protein:vir:10 338 DVQGTEAYKDRLNSDIHMFTNTPNMKDDNFS-GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSID 416 (511) T ss_pred CHHHHHHHHHHHHHHHHHHhCCccccccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc Confidence 5666777788888999999999875443221 11111111111 111122222222222222111111100 Q ss_pred --eeccccccCCCCC Q lcl|Aclame:pro 332 --IRFKNYSLDTDNG 344 (344) Q Consensus 332 --~~f~~y~l~~~~~ 344 (344) ..+..-++.|.+. T Consensus 417 ~~~d~~~i~i~f~~~ 431 (511) T protein:vir:10 417 ANKDFNTVRYVYNRN 431 (511) T ss_pred cccccceeeEEeCCC Confidence 1111224445555 No 195 >protein:vir:105461 Length: 470 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529871;genbank:gi:90592611;genbank:GeneID:3974525 Probab=29.33 E-value=1.7 Score=19.37 Aligned_cols=296 Identities=9% Similarity=-0.018 Sum_probs=104.3 Q ss_pred CCCCCCCCCCCch-hhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAA-KKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVK 79 (344) Q Consensus 1 msk~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~ 79 (344) +.++..+...... .....+.+. -..+ ..+...+--...+=..-.|+.+.. . +.. T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~--------~ki~---~n~~k~Iv~~~~~yl~G~p~~~~~-~-----d~~-------- 92 (470) T protein:vir:10 38 TTRNNGKAKLNKEGKKDPLRSAD--------NRIP---SNFYQLLVDQEAGYVASVFPDIDV-G-----KDA-------- 92 (470) T ss_pred hccccchhcccccccccccccCC--------cccc---cchHHHHHHhhhhheeccceeeec-C-----chH-------- Confidence 2221111000000 000000000 0000 011111100001111122222200 0 000 Q ss_pred hhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---------eEEEEcC-C Q lcl|Aclame:pro 80 RNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPS-F 149 (344) Q Consensus 80 ~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---------~~y~~~~-~ 149 (344) ....+...-.+.+ ...+..+..+.+.+|.+|.++..+..|++ .+..++|..+-+..+.. +||.... . T Consensus 93 ~~~~l~~~~~~~~--~~~~~~l~~~~~~~G~a~~~~y~d~~~~~-~~~~~~p~~~~~v~d~~~~~~~~a~ir~y~~~~~~ 169 (470) T protein:vir:10 93 DNKKIIDVLGDDR--ALTLNGLLVDSSNAGRAWLHYWIDEDGNF-RYGIIQPDQITPIYATTLDNKLLGILRSYKQLDPD 169 (470) T ss_pred HHHHHHHHHhhhH--HHHHHHHHHHHhhcCeeEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEeeecC Confidence 0000000000111 12334566788899999999999988864 46667776665443211 1222211 1 Q ss_pred c-eE----EEEecccEEEecCCCC----------------------------------------CCCccccccchhhHHH Q lcl|Aclame:pro 150 N-EP----TAFAPGSVFHLLEPDI----------------------------------------NQELYGLPEYLSALNS 184 (344) Q Consensus 150 ~-~~----~~~~~~eViH~r~~~~----------------------------------------~~~~~G~sp~~~~~~~ 184 (344) + .. ..+.++.+.|++.-.. .+.-.|.|-+...... T Consensus 170 ~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~l 249 (470) T protein:vir:10 170 SGKYFTVHEYWTDKEAQFFRTNATDSTVIEPYNIITSYDLSAGYETGQSNTLKHNFGRVPFIEFSKNKYRLPELNKYKGL 249 (470) T ss_pred CceEEEEEEEEcCCcEEEEEeecCcceeccccccccccccccccccccccccccCCCeeeEEEeecCCCCCCchhHHHHH Confidence 1 11 1122333333221000 0012356666655555 Q ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCC--Cccccceeeecccchh Q lcl|Aclame:pro 185 AWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQ--GKADGIKIIPLSEVAT 262 (344) Q Consensus 185 i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~--~~~~gl~~~pl~~~~~ 262 (344) +..-..+..-..+.+..-+.|-.+| ++..+++ .......+... +.+.+... +...++++. +.... T Consensus 250 iDa~d~~~S~~~~~~~~~~~~~lvl--~g~~~~~--~~~~~~~~~~~-------~~i~~~~~~~~~~~~~~~l--t~~~~ 316 (470) T protein:vir:10 250 IDAYDDIYNGFINDLDDVQTVILVL--TNYGGAD--LHQFMNDLRKY-------KSIKINNTGNGDNSGVDKL--QIDIP 316 (470) T ss_pred HHHHHHHHHHHHHHHHHhcCcceee--ecCCccc--cchhhhhhhhc-------CeEeccCCCCCcCceeEEE--eecCC Confidence 5443333333344445445555554 4433321 11122222111 11222211 122344443 33333 Q ss_pred HHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHH--------HH----HHHhhCCc Q lcl|Aclame:pro 263 KDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRI--------RE----INGWLGQE 330 (344) Q Consensus 263 d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~i--------ee----ln~~L~~~ 330 (344) ...+....+.-...|...-++|.. +.. . ++|.....+.+.-..+.=.+... .+ +.+.|+.. T Consensus 317 ~~~~~~~~~~L~~~I~~~s~~p~~--~~~--~---~gn~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~l~~~ 389 (470) T protein:vir:10 317 VEARDDALKITRKNIFLFGQGIDP--ANF--E---SSNASGVAIKMLYSHLELKAAKTQTYFEHAINELVRAIMRYLNFS 389 (470) T ss_pred hHHHHHHHHHHHHHHHHHhCCCCC--Ccc--c---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc Confidence 445666667778888888888853 221 1 12222222222211111111111 11 22233332 Q ss_pred ceeccccccCCCCC Q lcl|Aclame:pro 331 VIRFKNYSLDTDNG 344 (344) Q Consensus 331 ~~~f~~y~l~~~~~ 344 (344) ...+..-.+.|.+. T Consensus 390 ~~d~~~i~i~f~~~ 403 (470) T protein:vir:10 390 DADKRHISQHWTRT 403 (470) T ss_pred CcccceeeEEeccC Confidence 22222334444454 No 196 >protein:vir:102602 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654999;genbank:gi:109392189;genbank:GeneID:4157224 Probab=27.40 E-value=1.8 Score=19.12 Aligned_cols=305 Identities=10% Similarity=0.049 Sum_probs=97.2 Q ss_pred CCCCCC------------CCCCCchh--hccccccceEEE------EcCCccccccchhHHH-HhhhhhcCcceeccccH Q lcl|Aclame:pro 1 MSKKKG------------KTLQPAAK--KMTASAPKMEAF------TFGEPVPVLDRRDILD-YVECISNGRWYEPPISF 59 (344) Q Consensus 1 msk~~~------------~~~~~~~~--~~~~~~~~~~~~------~~~~p~~~~~~~~v~~-~~~~~~~~~~~~~p~~~ 59 (344) |+..-. .....-.. ..-.+....... ...+...-.. ..... +|. ...+-..-.|+.. T Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~k~~-~n~~~~ivd-~~~~~l~~~~~~~ 78 (456) T protein:vir:10 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREAR-TNWGLMVRD-SVADRIIPNGITV 78 (456) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhcCcccChhhhhhhhhhh-cchHHHHHH-HHHhhhccCCeec Confidence 110000 00000000 000000000000 0000000000 00101 111 0111112223221 Q ss_pred HHHHHHhhcchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceecccc Q lcl|Aclame:pro 60 TGLAKSLRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVE 139 (344) Q Consensus 60 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~ 139 (344) ..-. .......++. ...-|.+ ......+..+.+.+|.||+.+.++..|.+. +..++|..+.+..+ T Consensus 79 ~~~~-----d~~~~~~~~~-------i~~~N~~--d~~~~~~~~~a~i~G~ay~~v~~d~~g~~~-i~~~~p~~~~~i~d 143 (456) T protein:vir:10 79 GGSA-----DSDLALRARR-------IWRDNRM--DSVCKQWVKYGLDFGESYLTCWRRDDGTAT-ITADSPETMVVSVD 143 (456) T ss_pred CCCC-----CcchHHHHHH-------HHHhcCh--hhHHHHHHHHHhhcCeeEEEEeeCCCCceE-EEEEccceeEEEEc Confidence 0000 0000000000 0011211 122345667889999999999998888653 55666665543322 Q ss_pred Cc---------eEEEEcCCceE---------------------------EEEecc------cEEEecCCCC---CCCccc Q lcl|Aclame:pro 140 ED---------VYWWVPSFNEP---------------------------TAFAPG------SVFHLLEPDI---NQELYG 174 (344) Q Consensus 140 ~~---------~~y~~~~~~~~---------------------------~~~~~~------eViH~r~~~~---~~~~~G 174 (344) +. .||...++... .....+ +.-|.-+..| .....| T Consensus 144 ~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~g 223 (456) T protein:vir:10 144 PLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDG 223 (456) T ss_pred CCCCcceEEEEEEEEecCCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEEEecCCCC Confidence 11 01111111000 000000 0001100000 011246 Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCC----HHHHHHH--HHHHHHhhccccccccccccCCCc Q lcl|Aclame:pro 175 LPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQD----RNDIEML--RENMVKSKGRNNFKNLFLYAPQGK 248 (344) Q Consensus 175 ~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~----~e~~~~l--k~~~~~~~g~~n~~~~~vl~~~~~ 248 (344) +|.++.....+.....+..-.......-+.|--++. +...+ ++.-+.+ ...|+... +.++.+.+ T Consensus 224 ~gd~e~vi~liDa~~~~~s~~~~~~~~~a~~~~~i~--G~~~~~~~~d~~g~~~~~~~~~~~~~-----~~~~~~~~--- 293 (456) T protein:vir:10 224 MGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALK--STEHGLPNVDENGNAIDYASIFEAAP-----GALWELPP--- 293 (456) T ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHhhhHhHhhh--ccCcccccccccccccchhhhhhhhc-----cccccCCC--- Confidence 666665444333332222221222222222322221 11111 1111111 12232221 23333432 Q ss_pred cccceeeecccchhHHH-HHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHH------ Q lcl|Aclame:pro 249 ADGIKIIPLSEVATKDD-FFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIR------ 321 (344) Q Consensus 249 ~~gl~~~pl~~~~~d~q-~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie------ 321 (344) +.++..+.. .+++ |++..+..+.+|+++=++|++.+|....+ .++..++ +....|.=.+...+ T Consensus 294 --~~~~~q~~~--~~~~~~~~~l~~~i~~~~~~s~~p~~~~~~~~~N-~Sg~Ai~-----~~~~~l~~k~~~~~~~f~~~ 363 (456) T protein:vir:10 294 --GVDIWESQA--NDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSAN-QSAEGAH-----NIEKGFLFKCEDRLSIAKIG 363 (456) T ss_pred --CcceEEecc--cChhHHHHHHHHHHHHHHhccCCChHHhcccccC-hHHHHHH-----HHHHHHHHHHHHHHHHHHHH Confidence 334444432 2333 88999999999999999999999864221 2222122 22222211111111 Q ss_pred --HHHHhh----CCcceeccccccCCCCC Q lcl|Aclame:pro 322 --EINGWL----GQEVIRFKNYSLDTDNG 344 (344) Q Consensus 322 --eln~~L----~~~~~~f~~y~l~~~~~ 344 (344) ++-+.+ |.. .+...++.+.+. T Consensus 364 l~~~~rl~~~~~g~~--~~~~~~v~w~~~ 390 (456) T protein:vir:10 364 LEAILVKALQIEGES--VEDTVDVSFESP 390 (456) T ss_pred HHHHHHHHHHhcCCC--cccceeEEecCC Confidence 111111 111 111112222222 No 197 >protein:vir:105819 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655764;genbank:gi:109522087;genbank:GeneID:4157627 Probab=27.40 E-value=1.8 Score=19.12 Aligned_cols=305 Identities=10% Similarity=0.049 Sum_probs=97.2 Q ss_pred CCCCCC------------CCCCCchh--hccccccceEEE------EcCCccccccchhHHH-HhhhhhcCcceeccccH Q lcl|Aclame:pro 1 MSKKKG------------KTLQPAAK--KMTASAPKMEAF------TFGEPVPVLDRRDILD-YVECISNGRWYEPPISF 59 (344) Q Consensus 1 msk~~~------------~~~~~~~~--~~~~~~~~~~~~------~~~~p~~~~~~~~v~~-~~~~~~~~~~~~~p~~~ 59 (344) |+..-. .....-.. ..-.+....... ...+...-.. ..... +|. ...+-..-.|+.. T Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~k~~-~n~~~~ivd-~~~~~l~~~~~~~ 78 (456) T protein:vir:10 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREAR-TNWGLMVRD-SVADRIIPNGITV 78 (456) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhcCcccChhhhhhhhhhh-cchHHHHHH-HHHhhhccCCeec Confidence 110000 00000000 000000000000 0000000000 00101 111 0111112223221 Q ss_pred HHHHHHhhcchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceecccc Q lcl|Aclame:pro 60 TGLAKSLRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVE 139 (344) Q Consensus 60 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~ 139 (344) ..-. .......++. ...-|.+ ......+..+.+.+|.||+.+.++..|.+. +..++|..+.+..+ T Consensus 79 ~~~~-----d~~~~~~~~~-------i~~~N~~--d~~~~~~~~~a~i~G~ay~~v~~d~~g~~~-i~~~~p~~~~~i~d 143 (456) T protein:vir:10 79 GGSA-----DSDLALRARR-------IWRDNRM--DSVCKQWVKYGLDFGESYLTCWRRDDGTAT-ITADSPETMVVSVD 143 (456) T ss_pred CCCC-----CcchHHHHHH-------HHHhcCh--hhHHHHHHHHHhhcCeeEEEEeeCCCCceE-EEEEccceeEEEEc Confidence 0000 0000000000 0011211 122345667889999999999998888653 55666665543322 Q ss_pred Cc---------eEEEEcCCceE---------------------------EEEecc------cEEEecCCCC---CCCccc Q lcl|Aclame:pro 140 ED---------VYWWVPSFNEP---------------------------TAFAPG------SVFHLLEPDI---NQELYG 174 (344) Q Consensus 140 ~~---------~~y~~~~~~~~---------------------------~~~~~~------eViH~r~~~~---~~~~~G 174 (344) +. .||...++... .....+ +.-|.-+..| .....| T Consensus 144 ~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~g 223 (456) T protein:vir:10 144 PLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDG 223 (456) T ss_pred CCCCcceEEEEEEEEecCCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEEEecCCCC Confidence 11 01111111000 000000 0001100000 011246 Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCC----HHHHHHH--HHHHHHhhccccccccccccCCCc Q lcl|Aclame:pro 175 LPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQD----RNDIEML--RENMVKSKGRNNFKNLFLYAPQGK 248 (344) Q Consensus 175 ~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~----~e~~~~l--k~~~~~~~g~~n~~~~~vl~~~~~ 248 (344) +|.++.....+.....+..-.......-+.|--++. +...+ ++.-+.+ ...|+... +.++.+.+ T Consensus 224 ~gd~e~vi~liDa~~~~~s~~~~~~~~~a~~~~~i~--G~~~~~~~~d~~g~~~~~~~~~~~~~-----~~~~~~~~--- 293 (456) T protein:vir:10 224 MGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALK--STEHGLPNVDENGNAIDYASIFEAAP-----GALWELPP--- 293 (456) T ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHhhhHhHhhh--ccCcccccccccccccchhhhhhhhc-----cccccCCC--- Confidence 666665444333332222221222222222322221 11111 1111111 12232221 23333432 Q ss_pred cccceeeecccchhHHH-HHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHH------ Q lcl|Aclame:pro 249 ADGIKIIPLSEVATKDD-FFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIR------ 321 (344) Q Consensus 249 ~~gl~~~pl~~~~~d~q-~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie------ 321 (344) +.++..+.. .+++ |++..+..+.+|+++=++|++.+|....+ .++..++ +....|.=.+...+ T Consensus 294 --~~~~~q~~~--~~~~~~~~~l~~~i~~~~~~s~~p~~~~~~~~~N-~Sg~Ai~-----~~~~~l~~k~~~~~~~f~~~ 363 (456) T protein:vir:10 294 --GVDIWESQA--NDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSAN-QSAEGAH-----NIEKGFLFKCEDRLSIAKIG 363 (456) T ss_pred --CcceEEecc--cChhHHHHHHHHHHHHHHhccCCChHHhcccccC-hHHHHHH-----HHHHHHHHHHHHHHHHHHHH Confidence 334444432 2333 88999999999999999999999864221 2222122 22222211111111 Q ss_pred --HHHHhh----CCcceeccccccCCCCC Q lcl|Aclame:pro 322 --EINGWL----GQEVIRFKNYSLDTDNG 344 (344) Q Consensus 322 --eln~~L----~~~~~~f~~y~l~~~~~ 344 (344) ++-+.+ |.. .+...++.+.+. T Consensus 364 l~~~~rl~~~~~g~~--~~~~~~v~w~~~ 390 (456) T protein:vir:10 364 LEAILVKALQIEGES--VEDTVDVSFESP 390 (456) T ss_pred HHHHHHHHHHhcCCC--cccceeEEecCC Confidence 111111 111 111112222222 No 198 >protein:vir:105292 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950666;genbank:gi:119967836;genbank:GeneID:4643171 Probab=26.63 E-value=1.9 Score=19.02 Aligned_cols=286 Identities=8% Similarity=0.069 Sum_probs=103.3 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHH-hhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDY-VECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVK 79 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~-~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~ 79 (344) +.++.+........ ...+... +.. .+... |.. ..+-..-.|+.+.. .+. + T Consensus 59 ~~~~~~~~~~~~~~---~~~~~~k----------i~~-n~~~~ivd~-~~~~l~g~~~~~~~------~~d--------~ 109 (478) T protein:vir:10 59 LDAPPKRDVNGDYD---ETKPDWR----------MYT-NYHQNLVDQ-KVAYAVANPVTFGV------DND--------K 109 (478) T ss_pred hccccccccccccc---cccccce----------ecc-chHHHHHHH-HHhhhccCCeeeec------CCh--------H Confidence 11111110000000 0000000 000 01111 110 01111112222100 000 0 Q ss_pred hhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---------eEEEEcCCc Q lcl|Aclame:pro 80 RNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPSFN 150 (344) Q Consensus 80 ~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---------~~y~~~~~~ 150 (344) ....+.....|.+ ...+..++.+.+.+|.+|+.+..+.+|++ .+..++|..+.+..+.. ++|...+.. T Consensus 110 ~~~~l~~~~~n~~--~~~~~~~~~~~~~~G~~~~~~~~d~~g~~-~~~~~~p~~~~~i~d~~~~~~~~~~v~~~~~~~~~ 186 (478) T protein:vir:10 110 ALKQIQHTLNHKW--DDKLVDILTAASNKGIEWVQPYVDEEGEF-KTFRVPAEQAVPIWTNKERDELQAFIRVYELDGAE 186 (478) T ss_pred HHHHHHHHHhcCH--HHHHHHHHHHHHhcCeEEEEEEecCCCee-EEEEEcccceEEEEcCCCCCceEEEEEEEEecCce Confidence 0111111111221 23445667788999999999999888865 46666666554432111 112211111 Q ss_pred eEEEEeccc---------------------------------------EEEecCCCCCCCccccccchhhHHHHHHHHHH Q lcl|Aclame:pro 151 EPTAFAPGS---------------------------------------VFHLLEPDINQELYGLPEYLSALNSAWLNESA 191 (344) Q Consensus 151 ~~~~~~~~e---------------------------------------ViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa 191 (344) ....+.++. |+|++. ...|.|-+......+.....+ T Consensus 187 ~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~n-----~~~g~sd~~~v~~liDa~~~~ 261 (478) T protein:vir:10 187 RVEYWTKDDVTYYELKEGQLIPDFYRSDDHIQPHYYQGNKLMSWGRVPFIPFKN-----NPQEVSDLFMYKTIIDALDKR 261 (478) T ss_pred EEEEEeCCeEEEEEEcCCeeeccccccccccccceecccccccCCccceEEecc-----CCCCCCcHHHHHHHHHHHHHH Confidence 111122222 233322 224666665544444443333 Q ss_pred HHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHh Q lcl|Aclame:pro 192 TLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKK 271 (344) Q Consensus 192 ~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~ 271 (344) ..-..+.+...+.|-.+ +++...++. ......++ ..+++.+.+ ....++++. ........+.+..+ T Consensus 262 ~S~~~~~~~~~~~p~~~--~~g~~~~~~--~~~~~~~~-------~~~~~~~~~-~~~~~~~~l--~~~~~~~~~~~~~~ 327 (478) T protein:vir:10 262 LSDTQNTFDESVELIYI--LKGYEGEDM--KDFMHNLK-------YYKAISVAG-ESGSGVDTI--KVEVPIDSVKEYTK 327 (478) T ss_pred HHHHHHHHHHhhCceee--eecCCcccc--chhhhhhh-------hcceEEecC-CCCCcceEE--eecCChHHHHHHHH Confidence 33333344445556434 445333221 11111111 112222221 111233343 33334566777778 Q ss_pred hhHHHHHHHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHH--------H----HHHhhCCcceecccccc Q lcl|Aclame:pro 272 ASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIR--------E----INGWLGQEVIRFKNYSL 339 (344) Q Consensus 272 ~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie--------e----ln~~L~~~~~~f~~y~l 339 (344) ...+.|...-++|..-.+-.. +|.....+.+.-..+.-.+...+ + +...+|.+ +....-++ T Consensus 328 ~l~~~i~~~s~~p~~~~~~~~------~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~g~~-~~~~~i~i 400 (478) T protein:vir:10 328 MLRDYIIEFGQGVDFQQDKFG------NSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYRLD-VKVQDIEI 400 (478) T ss_pred HHHHHHHHHhCccccCccccc------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cccccceE Confidence 888889999998854332111 12222222222222222111111 1 11122321 11122244 Q ss_pred CCCCC Q lcl|Aclame:pro 340 DTDNG 344 (344) Q Consensus 340 ~~~~~ 344 (344) .|.++ T Consensus 401 ~f~~~ 405 (478) T protein:vir:10 401 TFNFN 405 (478) T ss_pred EecCC Confidence 45555 No 199 >protein:vir:94498 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240672;genbank:gi:66396340;genbank:GeneID:5133762 Probab=26.63 E-value=1.9 Score=19.02 Aligned_cols=287 Identities=8% Similarity=0.032 Sum_probs=103.5 Q ss_pred CCC-----CCCCCCCCchhhccccccceEEEEcCCccccccchhHHHH-hhhhhcCcceeccccHHHHHHHhhcchhhhh Q lcl|Aclame:pro 1 MSK-----KKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDY-VECISNGRWYEPPISFTGLAKSLRAAVHHSS 74 (344) Q Consensus 1 msk-----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~-~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~ 74 (344) +-+ |+.+. ..... .-...+.. ..+. .+... +.. ..+-..-.|+.+..- +.. T Consensus 54 ~g~~~i~~~~~~~-~~~~~-~~~~~~~~--------ki~~---n~~k~Ivd~-~~~~l~g~p~~~~~~------d~~--- 110 (474) T protein:vir:94 54 DKDNDIVKQMKKV-DVHGN-IDYDKPDW--------RITT---NFHQNLVDQ-KVSYVASKPVTYSCE------DEN--- 110 (474) T ss_pred ccccchhcccchh-ccccc-cccccCcc--------eeec---chHHHHHHH-HHhhhhcCCceeccC------cHH--- Confidence 111 10000 00000 00000000 0000 01111 110 011111122221100 000 Q ss_pred hhhhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---------eEEE Q lcl|Aclame:pro 75 PIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWW 145 (344) Q Consensus 75 ~i~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---------~~y~ 145 (344) ....+-...-|.+ ...+.++..+.+.+|.+|+.+.++.+|++ .+..++|..+-+..+.. ++|. T Consensus 111 -----~~~~l~~~~~n~~--~~~~~e~~~~~~~~G~~~~~~~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~ 182 (474) T protein:vir:94 111 -----VLKVIHDVLDTRW--DNKLIDILTATSNKGIDWLQVYINENGEM-KLFRVPAEQAIPIWVDKEREELKSFIRYYK 182 (474) T ss_pred -----HHHHHHHHHhccH--HHHHHHHHHHHhhcCceEEEEEecCCCee-EEEEEcccceEEEEcCCCCCceEEEEEEEE Confidence 0001111111222 23455667788999999999999888864 45556666554332211 1111 Q ss_pred EcCCceEEEEeccc-----------------------------------EEEecCCCCCCCccccccchhhHHHHHHHHH Q lcl|Aclame:pro 146 VPSFNEPTAFAPGS-----------------------------------VFHLLEPDINQELYGLPEYLSALNSAWLNES 190 (344) Q Consensus 146 ~~~~~~~~~~~~~e-----------------------------------ViH~r~~~~~~~~~G~sp~~~~~~~i~~~~a 190 (344) .........+.++. |++++. ...|.|-+......+..-.. T Consensus 183 ~~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----n~~g~sd~e~v~~liDa~n~ 257 (474) T protein:vir:94 183 FNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHVQSHFSNGNWGRVPFIAFKN-----NPEEVSDIWMYKSIIDAIDK 257 (474) T ss_pred ecCeEEEEEEeCCeEEEEEEcCCccccccccCcCcccccccccCCCccceEEecC-----CcCCCCcHHHHHHHHHHHHH Confidence 11111111122222 233321 12466666665555554443 Q ss_pred HHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHH Q lcl|Aclame:pro 191 ATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIK 270 (344) Q Consensus 191 a~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~ 270 (344) +..-..+.++..+.|-.++ ++...++ .+.+.... ...+++.+.+++ ++++.. .......+.+.. T Consensus 258 ~~s~~~~~~~~~~~~~lv~--~g~~~~~--~~~~~~~~-------~~~~~i~~~~~~---~~~~l~--~~~~~~~~~~~~ 321 (474) T protein:vir:94 258 RLSDAQNMFDESVELIYIL--KGYEGED--LEEFMRGL-------KYYKAINVDGDG---GVETIQ--VEVPVSSTKEYI 321 (474) T ss_pred HHHHHHHHHHHhcCceeee--ecCCccc--chhhhhhh-------hccceeeccCCC---ceeEEe--ecCCHHHHHHHH Confidence 3333344445555564444 4433322 11111111 123444444432 344433 333445566666 Q ss_pred hhhHHHHHHHhcCCHHHhccccccccccccHHH----------HHHHHHHHHHHHHHHHHHHHHHhhCCcceeccccccC Q lcl|Aclame:pro 271 KASAADLLDAHRIPFQLMGGKPENVGSLGDIEK----------VAKVFVRNELIPLQDRIREINGWLGQEVIRFKNYSLD 340 (344) Q Consensus 271 ~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~----------~~~~f~~~~l~P~~~~ieeln~~L~~~~~~f~~y~l~ 340 (344) +.-.+.|...-++|..-.+-. +++.++--++- .....+...|.-+++.+.+ .++... .+..-++. T Consensus 322 ~~l~~~I~~~s~~p~~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~---~~~~~~-d~~~i~v~ 396 (474) T protein:vir:94 322 DLMRVYIMEFGQGVDFQTDKF-GSAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIID---FNNLKT-DVKDIEIS 396 (474) T ss_pred HHHHHHHHHHhCccccCcccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCc-ccceeeEE Confidence 777788888888885322111 11111110110 0111222222222222222 223221 11222334 Q ss_pred CCCC Q lcl|Aclame:pro 341 TDNG 344 (344) Q Consensus 341 ~~~~ 344 (344) |++. T Consensus 397 f~~~ 400 (474) T protein:vir:94 397 FNFN 400 (474) T ss_pred eccC Confidence 4444 No 200 >protein:vir:97447 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240744;genbank:gi:66396413;genbank:GeneID:5133803 Probab=26.63 E-value=1.9 Score=19.02 Aligned_cols=287 Identities=8% Similarity=0.032 Sum_probs=103.5 Q ss_pred CCC-----CCCCCCCCchhhccccccceEEEEcCCccccccchhHHHH-hhhhhcCcceeccccHHHHHHHhhcchhhhh Q lcl|Aclame:pro 1 MSK-----KKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDY-VECISNGRWYEPPISFTGLAKSLRAAVHHSS 74 (344) Q Consensus 1 msk-----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~-~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~ 74 (344) +-+ |+.+. ..... .-...+.. ..+. .+... +.. ..+-..-.|+.+..- +.. T Consensus 54 ~g~~~i~~~~~~~-~~~~~-~~~~~~~~--------ki~~---n~~k~Ivd~-~~~~l~g~p~~~~~~------d~~--- 110 (474) T protein:vir:97 54 DKDNDIVKQMKKV-DVHGN-IDYDKPDW--------RITT---NFHQNLVDQ-KVSYVASKPVTYSCE------DEN--- 110 (474) T ss_pred ccccchhcccchh-ccccc-cccccCcc--------eeec---chHHHHHHH-HHhhhhcCCceeccC------cHH--- Confidence 111 10000 00000 00000000 0000 01111 110 011111122221100 000 Q ss_pred hhhhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---------eEEE Q lcl|Aclame:pro 75 PIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWW 145 (344) Q Consensus 75 ~i~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---------~~y~ 145 (344) ....+-...-|.+ ...+.++..+.+.+|.+|+.+.++.+|++ .+..++|..+-+..+.. ++|. T Consensus 111 -----~~~~l~~~~~n~~--~~~~~e~~~~~~~~G~~~~~~~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~ 182 (474) T protein:vir:97 111 -----VLKVIHDVLDTRW--DNKLIDILTATSNKGIDWLQVYINENGEM-KLFRVPAEQAIPIWVDKEREELKSFIRYYK 182 (474) T ss_pred -----HHHHHHHHHhccH--HHHHHHHHHHHhhcCceEEEEEecCCCee-EEEEEcccceEEEEcCCCCCceEEEEEEEE Confidence 0001111111222 23455667788999999999999888864 45556666554332211 1111 Q ss_pred EcCCceEEEEeccc-----------------------------------EEEecCCCCCCCccccccchhhHHHHHHHHH Q lcl|Aclame:pro 146 VPSFNEPTAFAPGS-----------------------------------VFHLLEPDINQELYGLPEYLSALNSAWLNES 190 (344) Q Consensus 146 ~~~~~~~~~~~~~e-----------------------------------ViH~r~~~~~~~~~G~sp~~~~~~~i~~~~a 190 (344) .........+.++. |++++. ...|.|-+......+..-.. T Consensus 183 ~~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----n~~g~sd~e~v~~liDa~n~ 257 (474) T protein:vir:97 183 FNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHVQSHFSNGNWGRVPFIAFKN-----NPEEVSDIWMYKSIIDAIDK 257 (474) T ss_pred ecCeEEEEEEeCCeEEEEEEcCCccccccccCcCcccccccccCCCccceEEecC-----CcCCCCcHHHHHHHHHHHHH Confidence 11111111122222 233321 12466666665555554443 Q ss_pred HHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHH Q lcl|Aclame:pro 191 ATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIK 270 (344) Q Consensus 191 a~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~ 270 (344) +..-..+.++..+.|-.++ ++...++ .+.+.... ...+++.+.+++ ++++.. .......+.+.. T Consensus 258 ~~s~~~~~~~~~~~~~lv~--~g~~~~~--~~~~~~~~-------~~~~~i~~~~~~---~~~~l~--~~~~~~~~~~~~ 321 (474) T protein:vir:97 258 RLSDAQNMFDESVELIYIL--KGYEGED--LEEFMRGL-------KYYKAINVDGDG---GVETIQ--VEVPVSSTKEYI 321 (474) T ss_pred HHHHHHHHHHHhcCceeee--ecCCccc--chhhhhhh-------hccceeeccCCC---ceeEEe--ecCCHHHHHHHH Confidence 3333344445555564444 4433322 11111111 123444444432 344433 333445566666 Q ss_pred hhhHHHHHHHhcCCHHHhccccccccccccHHH----------HHHHHHHHHHHHHHHHHHHHHHhhCCcceeccccccC Q lcl|Aclame:pro 271 KASAADLLDAHRIPFQLMGGKPENVGSLGDIEK----------VAKVFVRNELIPLQDRIREINGWLGQEVIRFKNYSLD 340 (344) Q Consensus 271 ~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~----------~~~~f~~~~l~P~~~~ieeln~~L~~~~~~f~~y~l~ 340 (344) +.-.+.|...-++|..-.+-. +++.++--++- .....+...|.-+++.+.+ .++... .+..-++. T Consensus 322 ~~l~~~I~~~s~~p~~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~---~~~~~~-d~~~i~v~ 396 (474) T protein:vir:97 322 DLMRVYIMEFGQGVDFQTDKF-GSAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIID---FNNLKT-DVKDIEIS 396 (474) T ss_pred HHHHHHHHHHhCccccCcccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCc-ccceeeEE Confidence 777788888888885322111 11111110110 0111222222222222222 223221 11222334 Q ss_pred CCCC Q lcl|Aclame:pro 341 TDNG 344 (344) Q Consensus 341 ~~~~ 344 (344) |++. T Consensus 397 f~~~ 400 (474) T protein:vir:97 397 FNFN 400 (474) T ss_pred eccC Confidence 4444 No 201 >protein:vir:98265 Length: 524 # NCBI annotation: gp20 portal vertex of the head # Family: family:all:1036 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239198;genbank:gi:66391673;genbank:GeneID:3416367 Probab=25.42 E-value=2.1 Score=18.86 Aligned_cols=329 Identities=13% Similarity=0.112 Sum_probs=136.7 Q ss_pred CCCCCCCCCCCchhhcccc---------ccceEEEEcCCccccccc--------------hhHHHHhhhhhcCcc----e Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTAS---------APKMEAFTFGEPVPVLDR--------------RDILDYVECISNGRW----Y 53 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~---------~~~~~~~~~~~p~~~~~~--------------~~v~~~~~~~~~~~~----~ 53 (344) ++++-....+|.....+.. ..++..-.+++.+....+ +.|=..|.-|-++.+ . T Consensus 28 ~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~y~~~e~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVneaIv~~~~ 107 (524) T protein:vir:98 28 LKNDTGSVAPPKNNDGAYEIETDLNNQKYAGVFQQFYSGQDPAIQNKEQLINTYRGIMSYPEVENAVSEIIDDAIVNEQG 107 (524) T ss_pred hcCCcccccCCCCCCCceeecCCCCcceecceeeeeccccccccchHHHHHHHHHHHhhccchhhHHHhhhcceeEecCC Confidence 5544444444433322211 111111224444433321 111112211111111 1 Q ss_pred eccccHHHHHHHhhcchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCc--eEEEEEecC Q lcl|Aclame:pro 54 EPPISFTGLAKSLRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGK--VIRLETSPA 131 (344) Q Consensus 54 ~~p~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~--~~~L~pl~~ 131 (344) ..||.+ .|... ..+......|......++... .....-...+.+|-..|..|..++-+.+.. +++|..|+| T Consensus 108 ~~pV~l-~L~~~-~~s~~iK~kI~eeF~~Il~ll-----~F~~~~~~~fR~WYVDgRi~fhkiid~~~~kGI~ELr~lDP 180 (524) T protein:vir:98 108 KDIITM-DLAKT-NFSKAIQDKIVEEFDNVLNIY-----DFDNMGARLFRDWYVDSRIYFHKIMHKDESKGIRELRQLDP 180 (524) T ss_pred CceEEE-Eeccc-ccchHHHHHHHHHHHHHHHHh-----ccchhhhHHHhhhhhcceeEEEEEEcCCCCcceeeeeeeCC Confidence 222222 01000 011111111222222222110 000111234456778899999998654332 899999999 Q ss_pred cceeccc-------cCc--------eEEEEcC-------------CceEEEEecccEEEecC--CCCCCCccccccchhh Q lcl|Aclame:pro 132 KYTRRGV-------EED--------VYWWVPS-------------FNEPTAFAPGSVFHLLE--PDINQELYGLPEYLSA 181 (344) Q Consensus 132 ~~v~~~~-------~~~--------~~y~~~~-------------~~~~~~~~~~eViH~r~--~~~~~~~~G~sp~~~~ 181 (344) .+++..+ +.+ .||.+.. -+..+.++.+.|.|... .+.+.++ +|-|..| T Consensus 181 r~i~~vr~~~~~~~~~~~~v~~~~~e~f~Y~~~~~~~~~~g~~~~~~~~ikI~~dAIvy~hSGL~d~~~~i--isyLhkA 258 (524) T protein:vir:98 181 RCMELIRESITETLDGGVKVFRGYREFFVYSAPKAGYTYNGQIYQANQKIKIPRSAIVYAHSGLEDCSNNI--IGYLHRA 258 (524) T ss_pred ccceeeeeccccccccchhhccceeeeeeeccCCCccccccceecCCCceeechhheeeeccCcccCCCCe--eeehhHh Confidence 8875432 111 1333321 12235677788888752 2323333 4666666 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceEEEeC-CCCCCHHHHHHHHHHHHHhh---------c-cccccc-ccccc----- Q lcl|Aclame:pro 182 LNSAWLNESATLFRRKYYENGAHAGYIMYVT-DAVQDRNDIEMLRENMVKSK---------G-RNNFKN-LFLYA----- 244 (344) Q Consensus 182 ~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~-~~~l~~e~~~~lk~~~~~~~---------g-~~n~~~-~~vl~----- 244 (344) ...+....-.+...-=|=-.-|.=.-|.++. |......+.+-+++-+.+++ | ..|..+ +-+|+ T Consensus 259 iKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGevrddrk~msMlEDyWLp 338 (524) T protein:vir:98 259 VKPANQLRLLEDAMVIYRITRAPERRVFYIDVGQMGGNKATQYVNNIAQGLKNRVVYDARTGTVKNQQNNLSMTEDYWLM 338 (524) T ss_pred hHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEeeccCceeeccccccchhhhhccc Confidence 6655555444444433333334334444442 33333445555666665544 1 111112 11221 Q ss_pred --CCCccccceeeec--ccchhHHHHHHHHhhhHHHHHHHhcCCHHHhcccccc-c-cccccHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 245 --PQGKADGIKIIPL--SEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPEN-V-GSLGDIEKVAKVFVRNELIPLQD 318 (344) Q Consensus 245 --~~~~~~gl~~~pl--~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~-~-~~~~n~e~~~~~f~~~~l~P~~~ 318 (344) .|++ |.+++.| +.+.-+++-++ +-...+-++.+||.+.++...++ + +-.+.|.-...-|.+. |.-+.. T Consensus 339 RReGgr--gTEItTLpggqnlgem~DV~---YF~kkLy~aLnVP~sRl~~~~~~f~~Gr~~EItRDEiKF~KF-I~rLR~ 412 (524) T protein:vir:98 339 RRDGKA--ITEVSTLPGGQNFSDMDDIK---WFNRKLYEALRVPLSRMPRDDGGMQIGGGGEITRDELKFSKF-IRTLQI 412 (524) T ss_pred ccCCCC--ccceeeccccCCcChHHHHH---HHHHHHHHHhCCCceeccCCCCccccccccchhHHHHHHHHH-HHHHHH Confidence 1222 3333332 33344444443 45567899999999999743211 1 1123344444555543 444555 Q ss_pred HHHHHH-HhhCC-----ccee---------ccccccCCCCC Q lcl|Aclame:pro 319 RIREIN-GWLGQ-----EVIR---------FKNYSLDTDNG 344 (344) Q Consensus 319 ~ieeln-~~L~~-----~~~~---------f~~y~l~~~~~ 344 (344) ++.++. +.|-. .++. .-.|++..|+- T Consensus 413 rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~ 453 (524) T protein:vir:98 413 QFSPVLSDPLKTNLIAKKIITEDEWEENVSKISFVFQQDSY 453 (524) T ss_pred HHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEEeecch Confidence 555432 22211 1111 11223333433 No 202 >protein:vir:4782 Length: 522 # NCBI annotation: putative minor capsid protein 1 # Family: family:all:898 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150162;swissprot:trembl:q94m49;genbank:gi:26553451;uniprot:Q94M49;genbank:GeneID:955983 Probab=25.33 E-value=2.1 Score=18.85 Aligned_cols=301 Identities=12% Similarity=0.072 Sum_probs=116.4 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHHhhhhhcCcceeccc-cHHHHHHHhhcchhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPI-SFTGLAKSLRAAVHHSSPIYVK 79 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~p~-~~~~l~~~~~~~~~~~~~i~~~ 79 (344) +-|.....-..... ..... ...+ +.-+... | .-+++=..-++|- .+ ..- ..+.... T Consensus 50 ~g~~~~~~~~~~~~-~~~~~---~~~s-------lnl~~~i-~-~~~A~lv~~e~~~i~v---~d~-~~~~~l~------ 106 (522) T protein:vir:47 50 QSKWDDVQYKNTDG-DIKSR---PMNH-------LPIARTA-S-KKIASLVYNEQATITT---KNE-ILQKFLD------ 106 (522) T ss_pred cCCcccccccccCc-chhcc---ccee-------cchHHHH-H-HHHhhhhcCCcceeec---CCh-HHHHHHH------ Confidence 22211110000000 00000 0000 0000000 0 0001000011110 11 000 0000000 Q ss_pred hhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceec--------------------ccc Q lcl|Aclame:pro 80 RNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRR--------------------GVE 139 (344) Q Consensus 80 ~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~--------------------~~~ 139 (344) .++ ..|.+ ...+...+...+..|.+++.+..+. |+ +.+..+++...-+ ... T Consensus 107 --~~l---~~n~f--~~~~~~~~e~a~a~G~~a~k~~~d~-~~-~~i~~v~ad~~~P~~~~~~~~~e~a~~~~~~~~~~~ 177 (522) T protein:vir:47 107 --DML---TNDRF--NKNFERYLESCLALGGLAMRPYIDG-DK-VRVAFIQAPVFFPLESNTQDVSSAAILTKTIKSEGR 177 (522) T ss_pred --HHH---hhcch--HHHHHHHHHHhhccCCEEEEEEEcC-Cc-eEEEEEcCCceEEEEEcCCceEEEEEEEEEEeeccc Confidence 011 11111 2335667777788888887776664 32 2222222221111 011 Q ss_pred CceEEEEc------------------------------C-----CceEEEEe--------ccc----------EEEecCC Q lcl|Aclame:pro 140 EDVYWWVP------------------------------S-----FNEPTAFA--------PGS----------VFHLLEP 166 (344) Q Consensus 140 ~~~~y~~~------------------------------~-----~~~~~~~~--------~~e----------ViH~r~~ 166 (344) ...||... . -|..+.+. +.+ ..|||.+ T Consensus 178 ~~~~yt~lE~he~~~~~~~~~~~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e~~~l~~~~~~~~~~~Plf~y~~~~ 257 (522) T protein:vir:47 178 KNVYYTLVEFHEWVTADGQETGSTNDKKYYRITNELYRSDVNDVLGQRVNLSELDKYKNLEPVTVFENLSRPLFTYLKTP 257 (522) T ss_pred ceeEEEEEEEeeecccccccccccccCCceEEEEEEeecCCCcccCccccccccccccCCCCceEeCCCCcceEEEecCC Confidence 11222210 0 01111000 011 2356544 Q ss_pred CCC----CCccccccchhhHHHHHHHHHHHHHHHHHHHhcCCCc----eEEEeCCCCCCHHHHHHHHHHHHHhhcccccc Q lcl|Aclame:pro 167 DIN----QELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAG----YIMYVTDAVQDRNDIEMLRENMVKSKGRNNFK 238 (344) Q Consensus 167 ~~~----~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~p~----gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~ 238 (344) .++ +..+|+|.+..+...+......-.-..+-|+-|-+.- .+|+..+.....+. .....|.. .. T Consensus 258 ~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~~g~~--~~~~~fd~------~~ 329 (522) T protein:vir:47 258 GMNNKDINSPLGLSIFDNAKTTIDFINRSYDEFMWEVRMGQRRVIVPEHLTQRQYQRPDGTI--DFRPRFDV------EQ 329 (522) T ss_pred cccccccCCCcCCchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCCCCccc--ccccccCc------cc Confidence 322 2357999999888877665554444445556665421 11222111000000 00001100 00 Q ss_pred ccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHH-------------H Q lcl|Aclame:pro 239 NLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKV-------------A 305 (344) Q Consensus 239 ~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~-------------~ 305 (344) .++.-......++-.++.++....+.++.+..+.....|+...|+++..+|...++. .++.+. . T Consensus 330 ~~f~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~i~~~~gls~~tf~~~~~~~---kTAtEi~s~~~~~~~t~~~~ 406 (522) T protein:vir:47 330 NVYMQIGGSSMDAGGITDLTSPIRANDYILAISEGLKLFEMQIGVSSGMFTFDGQGM---KTATEIVSENSDTYQMRSSI 406 (522) T ss_pred ceEeecCCCCCCCCcceeeccccChHHHHHHHHHHHHHHHHHhCCCccccCcccccc---ccHHHHHHHHHHHHHHHHHH Confidence 111100001112224566666778889999999999999999999999999754332 233333 3 Q ss_pred HHHHHHHHHHHHHHHHHHHHh---hCCcceeccccccCCCCC Q lcl|Aclame:pro 306 KVFVRNELIPLQDRIREINGW---LGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 306 ~~f~~~~l~P~~~~ieeln~~---L~~~~~~f~~y~l~~~~~ 344 (344) +..++.+|.-++..+.++-.. ++.....-.+-.++|+|+ T Consensus 407 ~~~~~~al~~lv~~i~~l~~~~~~~~~~~~~~~~i~v~f~D~ 448 (522) T protein:vir:47 407 VALVEQSIKELCVSMCELGKAVGVYSGEIPELDDISVNLDDG 448 (522) T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEEcCCC Confidence 334455555555444443321 111211112235678888 No 203 >protein:vir:9871 Length: 429 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795633;genbank:gi:28876408;genbank:GeneID:1257942 Probab=24.27 E-value=2.2 Score=18.71 Aligned_cols=280 Identities=10% Similarity=0.028 Sum_probs=106.0 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHHHH-hhhhhcCcceeccccHHHHHHHhhcchhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDY-VECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVK 79 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~-~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~~ 79 (344) .+++.+... .+. .- +.. .+... |.. ..+-.+..|+.+.. .+......+.. T Consensus 34 l~~~~~~~~-~~~--------~k-----------i~~-n~~~~ivd~-~~~~l~g~~~~~~~------~~~~~~~~l~~- 84 (429) T protein:vir:98 34 LQQKQKEQY-KPD--------NR-----------LVV-NFAKYIVDT-FNGYFIGVPVQTSH------ENKQVSNYLEL- 84 (429) T ss_pred ccccccccC-CCc--------ce-----------eec-chHHHHHHH-HhhhhcccCceeec------CChHHHHHHHH- Confidence 222211100 000 00 000 01111 110 11111112222100 00000000000 Q ss_pred hhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc---------eEEEEcCC- Q lcl|Aclame:pro 80 RNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPSF- 149 (344) Q Consensus 80 ~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~---------~~y~~~~~- 149 (344) ...-|.+ ...+..+..+.+.+|.+|+.+.++.+|++ .+..++|..+.+..+.. .||...+. T Consensus 85 ------~~~~n~~--~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~~~~~~p~~~~~v~dd~~~~~~~~~i~~~~~~~~~ 155 (429) T protein:vir:98 85 ------LDGYNDQ--DDNNAELSKICSIYGHGYELVFNDENAEA-GITYLTPLEAFIVYDDSIRQKPLFAVRYFYNKGGV 155 (429) T ss_pred ------HHhhcCH--hHHHHHHHHHHhhcCeEEEEEEecCCCcE-EEEEEcccceEEEEeCCCCCceEEEEEEEEecCce Confidence 0011111 13355677789999999999999988875 46666676554322110 01111111 Q ss_pred --------ceEEEEec-----------------ccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 150 --------NEPTAFAP-----------------GSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAH 204 (344) Q Consensus 150 --------~~~~~~~~-----------------~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f~ng~~ 204 (344) ...+.+.. =-|++++. ...|.|-+......+.....+..-..+.....+. T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~sd~e~v~~liD~~d~~~s~~~~~~~~~~~ 230 (429) T protein:vir:98 156 LEGSYSDASNITYFKDGEKGIEIGESEPHPFDGVPMIEYVE-----NEERQSLLASVVTLINAFNKAISEKANDVEYFAD 230 (429) T ss_pred EEEEEEeCceEEEEEecCCceEecccccccCCccceEEecC-----CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcC Confidence 00001100 01344432 2347777776555555544444444444566666 Q ss_pred CceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHHHHHHHHhhhHHHHHHHhcCC Q lcl|Aclame:pro 205 AGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIP 284 (344) Q Consensus 205 p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~q~~e~~~~~~~~Ia~~fgVP 284 (344) |-.++ ++...+++....++. .+.+.+-.++++..+ ...++.......+.+..+.-.+.|+..-++| T Consensus 231 p~~~i--~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p 296 (429) T protein:vir:98 231 AYLKI--LGAELDDETLKSLRD----------TRIINLKDTDAQQLT--VEFLQKPDADATQEHLLDRLENLIFRTAMVA 296 (429) T ss_pred ceeee--ecCCCCcchhhhHhh----------CceeeccCCCCCCcc--eeEEeecCCHHHHHHHHHHHHHHHHHHhCcc Confidence 65554 455455443322211 112222222222223 3333333444446666788899999999998 Q ss_pred HHHhccccccccccccHHHHHHHHHHHHHHHHHHH----H----HH----HHHhhCCcceecccc--ccCCCCC Q lcl|Aclame:pro 285 FQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDR----I----RE----INGWLGQEVIRFKNY--SLDTDNG 344 (344) Q Consensus 285 p~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~----i----ee----ln~~L~~~~~~f~~y--~l~~~~~ 344 (344) ..-.+ . ++|.....+.+....+.=.+.. + ++ +.+.++.....++.. ++.|.+. T Consensus 297 ~~~~~----~---~gn~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~d~~~i~v~f~~~ 363 (429) T protein:vir:98 297 NISDE----S---FGTASGIALRYRLQAMDNLAKTKERKFMSGMNRRYKLIASYPTSKIGPKDWIGIKYKFTRN 363 (429) T ss_pred ccCcc----c---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccceEEeCCC Confidence 53221 1 1222222222211111111111 1 11 111122211111111 2334444 No 204 >protein:vir:99072 Length: 479 # NCBI annotation: gp27 # Family: family:all:524 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655892;genbank:gi:109521464;genbank:GeneID:4158037 Probab=23.85 E-value=2.3 Score=18.65 Aligned_cols=288 Identities=9% Similarity=-0.030 Sum_probs=100.0 Q ss_pred CCCCCCCCCCCchhhccccccceEEEEcCCccccccchhHH----HHhhhhhcCcceeccccHHHHHHHhhcchhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDIL----DYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPI 76 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~----~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i 76 (344) .-|+.-+...... . ..+...+.+-.+. -+|... .+.. -|..+ ... +......+ T Consensus 41 ~g~~~i~~~~~~~----~----------~~~~~~~~~~~~~n~~~~iVd~~-~~~l--~~~gf-~~~-----d~~~~~~~ 97 (479) T protein:vir:99 41 KNGQEVPDLATRH----K----------NKEREVLQQLSRKPWMGLMVNSF-AQQL--IVDGY-RKT-----GTNENAKG 97 (479) T ss_pred hcCCccccccccc----C----------ChhHHHHHHHhhcCcHHHHHHHH-Hhhc--ccccc-cCC-----CchhhHHH Confidence 1111100000000 0 0000000000000 011100 0000 00000 000 00000000 Q ss_pred hhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEE-----CCCCceEEEEEecCcceecccc-Cc----eEEEE Q lcl|Aclame:pro 77 YVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRY-----STTGKVIRLETSPAKYTRRGVE-ED----VYWWV 146 (344) Q Consensus 77 ~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r-----~~~G~~~~L~pl~~~~v~~~~~-~~----~~y~~ 146 (344) + . ...-|.+. ..+..+..+.+.+|.+|+.+.+ +..|.+ .+..++|..+....+ .. ..|.+ T Consensus 98 ~----~---i~~~N~~d--~~~~~~~~~a~~~G~af~~v~~~~~~~d~~g~~-~i~~~~p~~~~~iydd~~~~~~~~~~~ 167 (479) T protein:vir:99 98 W----D---TWRLNQMD--KQQFWLNRAVLTFGYAFIKVTSGISPLDGTTVA-RIKCIDPRDAFAIWEDPYWDEWPKYLL 167 (479) T ss_pred H----H---HHHhcChh--HHHHHHHHHHhhcCceEEEEecCCCCcCCCCce-EEEEechhheEEEecCCcccceeeEEE Confidence 0 0 00112211 2344566788999999998875 333443 466666665543211 11 00111 Q ss_pred --c------------------CCceEEE-------EecccEEEecCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 147 --P------------------SFNEPTA-------FAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYY 199 (344) Q Consensus 147 --~------------------~~~~~~~-------~~~~eViH~r~~~~~~~~~G~sp~~~~~~~i~~~~aa~~~~~~~f 199 (344) . ..+.... +..=-|+||++..-. +-.|.|.+......+.....+..-..+.. T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~-~~~g~sd~e~v~~liDa~~~~~s~~~~~~ 246 (479) T protein:vir:99 168 ERQPNGQYWWWTEEDYSIFEFKQGKFIYRETVSHDYGHIPFVRYVNVMDL-RGVCYGDVEPLVTVAKAIDKTGLDILLVQ 246 (479) T ss_pred eecCceeEEEEecceEEEEEecCCceeeccccccCCCCcceEEeecCCCc-CcCCcchhHHHHHHHHHHHHHHHHHHHHH Confidence 0 1111100 000115666643211 23588877665554444444443333444 Q ss_pred HhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecccchhHH-HHHHHHhhhHHHHH Q lcl|Aclame:pro 200 ENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKD-DFFNIKKASAADLL 278 (344) Q Consensus 200 ~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~~~~~d~-q~~e~~~~~~~~Ia 278 (344) .-.+.|-.+|. +..+.++... -...|.. ..++++.+. .++.++..+.. .++ .+++..+....+|+ T Consensus 247 ~~~a~p~~~i~--G~~~~~~~~~-~~~~~~~-----~~~~i~~~~----~~~~~~~q~~~--~~~~~~~~~l~~~i~~i~ 312 (479) T protein:vir:99 247 HHQSFQIRWAT--GLMLPEGANA-DQEKMRF-----AQESMLISQ----NEKASFGAIPA--APLDGLLNAYKESLLEFL 312 (479) T ss_pred HHhhchhhhhc--CCCccccccc-chhcccc-----ccccceeec----CCCceEEEecc--cchHHHHHHHHHHHHHHh Confidence 44455544443 3222221111 1111211 112333332 23445554432 222 37777777788888 Q ss_pred HHhcCCHHHhccccccccccccHHHHHHHHHHHHHHHHHHH--------HHHHHHh----hCCcceecccccc--CCCCC Q lcl|Aclame:pro 279 DAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDR--------IREINGW----LGQEVIRFKNYSL--DTDNG 344 (344) Q Consensus 279 ~~fgVPp~~lg~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~--------ieeln~~----L~~~~~~f~~y~l--~~~~~ 344 (344) ++=++|++.+|... ++++ + ...+....|.=.+.. |+++.+. ++... ....+++ .+.+. T Consensus 313 ~~t~~p~~~~g~~~--n~Sg---~--Al~~~~~~l~~ka~~~~~~f~~al~~~~~l~~~~~~~~~-~~~~~~i~~~w~~~ 384 (479) T protein:vir:99 313 ALAQLPPHIAGQIV--NVAA---D--ALAAGTRQTMQKLFEKQATWKASHNQTMRLVNKIEGRTE-EATDLDFTITWQDV 384 (479) T ss_pred ccCCCCHHHccccc--chHH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-cccceeeeEEecCC Confidence 88899999998632 1221 1 111222222211111 1111111 11110 0111111 11222 No 205 >protein:vir:5961 Length: 503 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690661;genbank:geneid:6329220;genbank:gi:22855055;interpro:IPR006428;uniprot:P54309;genbank:GeneID:955279 Probab=21.77 E-value=2.5 Score=18.36 Aligned_cols=307 Identities=9% Similarity=0.018 Sum_probs=101.2 Q ss_pred CCCCCCCCCCCchhhcccccc-------------ceEEEEcCCccccccchhHHHHh-hhhhcCcceeccccHHHHHHHh Q lcl|Aclame:pro 1 MSKKKGKTLQPAAKKMTASAP-------------KMEAFTFGEPVPVLDRRDILDYV-ECISNGRWYEPPISFTGLAKSL 66 (344) Q Consensus 1 msk~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~p~~~~~~~~v~~~~-~~~~~~~~~~~p~~~~~l~~~~ 66 (344) |.+.+.+... .-...-.+.. ....-...-|..-+. ..+...+ .. ..+-.+-.|+.+.. T Consensus 38 i~~~~~~~~~-~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~~~~ri~-~n~~~~ivd~-~~~yl~g~~~~~~~----- 109 (503) T protein:vir:59 38 IDEHNPEPLL-KGVRYYMCENDIEKKRRTYYDAAGQQLVDDTKTNNRTS-HAWHKLFVDQ-KTQYLVGEPVTFTS----- 109 (503) T ss_pred HHhhcHHHHH-HHHHHhccccchhhccchhcccccccccccccccceee-cchHHHHHHH-HHhhhhcCCeeecc----- Confidence 1211100000 0000000000 000000000000000 0111111 11 11111112222100 Q ss_pred hcchhhhhhhhhhhhhHHHhcccCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCceEEEEEecCcceeccccCc----- Q lcl|Aclame:pro 67 RAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED----- 141 (344) Q Consensus 67 ~~~~~~~~~i~~~~~~~~~~~~pn~~~~~~~f~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~----- 141 (344) .+. +....+-...-|.+ ...+..++.+.+.+|.+|+.+..+.+|++ .+..++|..+.+..+.. T Consensus 110 -~d~--------~~~~~l~~~~~n~~--~~~~~~~~~~~~~~G~~~~~v~~d~dg~~-~i~~~~p~~~~~i~d~~~~~~~ 177 (503) T protein:vir:59 110 -DNK--------TLLEYVNELADDDF--DDILNETVKNMSNKGIEYWHPFVDEEGEF-DYVIFPAEEMIVVYKDNTRRDI 177 (503) T ss_pred -CcH--------HHHHHHHHHHhcCH--HHHHHHHHHHHhhCCeEEEEEeecCCCce-EEEEEccceeEEEEeCCCCCce Confidence 000 00011111111221 22345577788999999999999988875 47777776654432211 Q ss_pred ----eEEEEcC-Cce----EEEEecccEEEecCC------------------------------CC----CCCccccccc Q lcl|Aclame:pro 142 ----VYWWVPS-FNE----PTAFAPGSVFHLLEP------------------------------DI----NQELYGLPEY 178 (344) Q Consensus 142 ----~~y~~~~-~~~----~~~~~~~eViH~r~~------------------------------~~----~~~~~G~sp~ 178 (344) +||.... .+. ...+.++.|.++..- -| .+.-.|.|.+ T Consensus 178 ~~~ir~~~~~~~~~~~~~~~evy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPiv~~~nn~~~~sd~ 257 (503) T protein:vir:59 178 LFALRYYSYKGIMGEETQKAELYTDTHVYYYEKIDGVYQMDYSYGENNPRPHMTKGGQAIGWGRVPIIPFKNNEEMVSDL 257 (503) T ss_pred EEEEEEEEEecCCCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccceeecceeccCCccceEEecCCCCCCcch Confidence 1222211 111 112233333322210 00 0112366655 Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhhccccccccccccCCCccccceeeecc Q lcl|Aclame:pro 179 LSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLS 258 (344) Q Consensus 179 ~~~~~~i~~~~aa~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~lk~~~~~~~g~~n~~~~~vl~~~~~~~gl~~~pl~ 258 (344) ..+...+..-..+..-..+.+...+.|-.++ ++....+ .......+. ..+++.+.+++ ++++.. T Consensus 258 ~~~~~liDa~d~~~s~~~~~~~~~~~~~~v~--~g~~~~~--~~~~~~~~~-------~~~~~~~~~~~---~~~~l~-- 321 (503) T protein:vir:59 258 KFYKDLIDNYDSITSSTMDSFSDFQQIVYVL--KNYDGEN--PKEFTANLR-------YHSVIKVSGDG---GVDTLR-- 321 (503) T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCeeEe--ecCCccc--cchhhhhhh-------cccceeccCCC---cceeEe-- Confidence 5555444443333333344455666665554 3432221 111111121 12233343322 334433 Q ss_pred cchhHHHHHHHHhhhHHHHHHHhcCCHHHhccccccccccccHHHH----------HHHHHHHHHHHHHHHHHHHHHhhC Q lcl|Aclame:pro 259 EVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKV----------AKVFVRNELIPLQDRIREINGWLG 328 (344) Q Consensus 259 ~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~n~e~~----------~~~f~~~~l~P~~~~ieeln~~L~ 328 (344) .......+.+..+.-.+.|...-++|..-.+.. .++.++..++-. ....+...|.-+++.+.++-...+ T Consensus 322 ~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~-~~~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~~~~~ 400 (503) T protein:vir:59 322 AEIPVDSAAKELERIQDELYKSAQAVDNSPETI-GGGATGPALENLYALLDLKANMAERKIRAGLRLFFWFFAEYLRNTG 400 (503) T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcccCCCcccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 233334455555566666766666664322111 111221111111 111122222222222221111111 Q ss_pred Ccc-eeccccccCCCCC Q lcl|Aclame:pro 329 QEV-IRFKNYSLDTDNG 344 (344) Q Consensus 329 ~~~-~~f~~y~l~~~~~ 344 (344) ... .......+.|.+. T Consensus 401 ~~~~~~~~~i~i~f~~~ 417 (503) T protein:vir:59 401 KGDFNPDKELTMTFTRT 417 (503) T ss_pred CcccccccceeEEeCCC Confidence 110 0111235555555 Done!