Query lcl|Aclame:protein:vir:7407|NCBI_annot:putative portal protein|genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Match_columns 392 No_of_seqs 144 out of 1118 Neff 10.0 Searched_HMMs 1612 Date Sat Nov 30 19:29:20 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_33 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_33_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:7407 Length: 392 # 100.0 3E-102 2E-105 577.3 42.9 392 1-392 1-392 (392) 2 protein:vir:3989 Length: 392 # 100.0 4E-101 2E-104 571.2 43.0 392 1-392 1-392 (392) 3 protein:vir:1023 Length: 392 # 100.0 4E-101 2E-104 571.2 43.0 392 1-392 1-392 (392) 4 protein:vir:4995 Length: 384 # 100.0 5.8E-87 3.6E-90 493.4 39.6 384 3-391 1-384 (384) 5 protein:vir:4952 Length: 386 # 100.0 3.4E-86 2.1E-89 489.1 40.8 384 3-391 1-386 (386) 6 protein:vir:4854 Length: 386 # 100.0 3.8E-86 2.4E-89 488.9 40.3 384 3-391 1-386 (386) 7 protein:vir:4828 Length: 382 # 100.0 5.8E-86 3.6E-89 487.9 40.5 381 3-391 1-382 (382) 8 protein:vir:100249 Length: 431 100.0 5.5E-84 3.4E-87 477.0 40.1 381 3-392 1-429 (431) 9 protein:vir:3843 Length: 397 # 100.0 3.4E-83 2.1E-86 472.7 40.1 380 3-392 1-396 (397) 10 protein:vir:79984 Length: 441 100.0 1.2E-82 7.6E-86 469.6 38.9 378 1-389 24-441 (441) 11 protein:vir:9408 Length: 441 # 100.0 1.2E-82 7.6E-86 469.6 38.9 378 1-389 24-441 (441) 12 protein:vir:81095 Length: 416 100.0 1.7E-82 1.1E-85 468.8 39.1 379 3-389 1-416 (416) 13 protein:vir:4598 Length: 416 # 100.0 1.7E-82 1.1E-85 468.8 39.1 379 3-389 1-416 (416) 14 protein:vir:98396 Length: 441 100.0 2.8E-82 1.8E-85 467.7 39.4 381 1-389 21-441 (441) 15 protein:vir:81072 Length: 432 100.0 9.7E-82 6E-85 464.7 39.8 384 1-392 5-418 (432) 16 protein:vir:1380 Length: 422 # 100.0 1.3E-81 7.8E-85 464.1 39.6 385 3-390 1-422 (422) 17 protein:vir:97060 Length: 432 100.0 1.3E-81 7.9E-85 464.1 39.1 384 1-392 5-418 (432) 18 protein:vir:107605 Length: 432 100.0 1.5E-81 9.4E-85 463.7 39.3 388 3-392 1-425 (432) 19 protein:vir:102855 Length: 432 100.0 1.5E-81 9.4E-85 463.7 39.3 388 3-392 1-425 (432) 20 protein:vir:105002 Length: 432 100.0 1.5E-81 9.4E-85 463.7 39.3 388 3-392 1-425 (432) 21 protein:vir:6240 Length: 457 # 100.0 3.2E-81 2E-84 461.9 40.5 389 3-392 1-435 (457) 22 protein:vir:10362 Length: 432 100.0 2.2E-81 1.4E-84 462.7 39.5 384 1-392 5-418 (432) 23 protein:vir:93610 Length: 454 100.0 3.1E-81 1.9E-84 461.9 39.7 387 5-392 1-426 (454) 24 protein:vir:105064 Length: 421 100.0 4.4E-81 2.7E-84 461.1 36.7 374 3-392 1-411 (421) 25 protein:vir:81152 Length: 411 100.0 2.8E-80 1.8E-83 456.7 38.7 375 3-387 1-411 (411) 26 protein:vir:101648 Length: 518 100.0 4.6E-80 2.9E-83 455.5 39.7 382 1-392 1-418 (518) 27 protein:vir:100150 Length: 437 100.0 4E-80 2.5E-83 455.9 38.9 384 1-392 1-415 (437) 28 protein:vir:7853 Length: 518 # 100.0 5.1E-80 3.2E-83 455.3 39.3 381 1-392 1-418 (518) 29 protein:vir:1326 Length: 457 # 100.0 9E-80 5.6E-83 453.9 40.5 389 3-392 1-421 (457) 30 protein:vir:102080 Length: 429 100.0 4.7E-80 2.9E-83 455.5 38.7 385 3-392 1-422 (429) 31 protein:vir:4454 Length: 414 # 100.0 7.7E-80 4.8E-83 454.3 39.6 377 3-392 1-412 (414) 32 protein:vir:4337 Length: 434 # 100.0 7.4E-80 4.6E-83 454.4 39.3 386 1-392 1-432 (434) 33 protein:vir:5737 Length: 419 # 100.0 4.9E-80 3.1E-83 455.4 37.1 375 3-392 1-405 (419) 34 protein:vir:1082 Length: 359 # 100.0 5.2E-80 3.3E-83 455.2 36.9 353 3-369 1-359 (359) 35 protein:vir:4509 Length: 424 # 100.0 2.8E-79 1.7E-82 451.3 39.9 377 1-392 15-416 (424) 36 protein:vir:1884 Length: 424 # 100.0 4.8E-79 3E-82 450.0 38.5 377 1-392 16-421 (424) 37 protein:vir:102118 Length: 409 100.0 8.3E-79 5.2E-82 448.6 38.6 371 3-387 1-409 (409) 38 protein:vir:483 Length: 413 # 100.0 1.1E-78 6.7E-82 448.0 38.7 377 3-392 1-413 (413) 39 protein:vir:189 Length: 424 # 100.0 1.5E-78 9.4E-82 447.2 38.4 379 1-392 10-421 (424) 40 protein:vir:8418 Length: 409 # 100.0 4.4E-78 2.7E-81 444.7 39.2 378 3-392 1-401 (409) 41 protein:vir:1266 Length: 416 # 100.0 3.3E-78 2E-81 445.4 38.2 378 3-391 1-416 (416) 42 protein:vir:1431 Length: 419 # 100.0 4.6E-78 2.8E-81 444.6 37.2 374 3-392 1-408 (419) 43 protein:vir:80333 Length: 419 100.0 1.2E-77 7.3E-81 442.3 36.8 374 3-392 1-406 (419) 44 protein:vir:8317 Length: 409 # 100.0 1.4E-77 8.8E-81 441.9 36.9 364 3-387 1-409 (409) 45 protein:vir:81218 Length: 423 100.0 1.8E-77 1.1E-80 441.4 37.2 383 3-392 1-418 (423) 46 protein:vir:94666 Length: 723 100.0 1.8E-77 1.1E-80 441.3 36.6 364 24-392 1-401 (723) 47 protein:vir:100187 Length: 385 100.0 7.1E-77 4.4E-80 438.1 39.1 374 3-390 1-385 (385) 48 protein:vir:2683 Length: 412 # 100.0 2.5E-76 1.5E-79 435.1 37.8 379 3-392 1-412 (412) 49 protein:vir:9702 Length: 406 # 100.0 3.6E-76 2.2E-79 434.2 37.7 368 3-392 1-390 (406) 50 protein:vir:8100 Length: 466 # 100.0 3E-76 1.9E-79 434.6 36.8 387 3-390 1-466 (466) 51 protein:vir:3868 Length: 417 # 100.0 4.3E-76 2.7E-79 433.8 37.1 370 3-392 1-407 (417) 52 protein:vir:100882 Length: 383 100.0 2.3E-75 1.4E-78 429.8 38.8 370 3-388 1-383 (383) 53 protein:vir:93943 Length: 409 100.0 2.9E-75 1.8E-78 429.2 37.8 379 3-392 1-409 (409) 54 protein:vir:96980 Length: 409 100.0 9.4E-75 5.9E-78 426.4 37.8 378 1-392 2-409 (409) 55 protein:vir:94426 Length: 409 100.0 1.5E-74 9.5E-78 425.3 37.9 378 1-392 2-409 (409) 56 protein:vir:101647 Length: 460 100.0 3.7E-74 2.3E-77 423.2 34.8 382 5-392 1-453 (460) 57 protein:vir:80134 Length: 403 100.0 3.6E-73 2.3E-76 417.7 35.9 364 3-389 1-403 (403) 58 protein:vir:104259 Length: 403 100.0 1.1E-71 6.8E-75 409.6 37.5 363 3-392 1-397 (403) 59 protein:vir:95378 Length: 406 100.0 3.8E-71 2.3E-74 406.7 37.1 371 3-392 1-404 (406) 60 protein:vir:102727 Length: 945 100.0 2.7E-71 1.7E-74 407.5 36.1 386 1-392 63-521 (945) 61 protein:vir:960 Length: 413 # 100.0 4.8E-71 3E-74 406.1 36.1 375 1-392 11-409 (413) 62 protein:vir:6210 Length: 394 # 100.0 3.2E-71 2E-74 407.1 34.7 357 3-390 1-394 (394) 63 protein:vir:4194 Length: 540 # 100.0 4.8E-67 3E-70 384.2 35.4 383 5-392 1-435 (540) 64 protein:vir:95965 Length: 385 100.0 4.4E-66 2.8E-69 378.9 33.5 351 3-390 1-385 (385) 65 protein:vir:9359 Length: 348 # 100.0 1.4E-65 8.5E-69 376.2 34.8 318 67-392 1-348 (348) 66 protein:vir:80644 Length: 551 100.0 2.4E-65 1.5E-68 374.9 35.4 387 1-392 3-510 (551) 67 protein:vir:4156 Length: 542 # 100.0 5.3E-65 3.3E-68 373.0 35.6 378 5-392 1-432 (542) 68 protein:vir:100650 Length: 395 100.0 1.7E-64 1.1E-67 370.2 35.5 355 3-392 1-380 (395) 69 protein:vir:9507 Length: 395 # 100.0 1.7E-64 1.1E-67 370.2 35.5 355 3-392 1-380 (395) 70 protein:vir:101289 Length: 395 100.0 1.7E-64 1.1E-67 370.2 35.5 355 3-392 1-380 (395) 71 protein:vir:78310 Length: 376 100.0 1E-64 6.2E-68 371.5 32.9 352 3-388 1-376 (376) 72 protein:vir:80796 Length: 574 100.0 1E-63 6.5E-67 365.9 36.8 382 1-392 25-513 (574) 73 protein:vir:63755 Length: 547 100.0 8.7E-64 5.4E-67 366.3 35.1 387 3-392 1-506 (547) 74 protein:vir:9641 Length: 395 # 100.0 1.8E-64 1.1E-67 370.1 31.1 357 3-392 1-394 (395) 75 protein:vir:4089 Length: 395 # 100.0 5.3E-64 3.3E-67 367.5 33.2 359 3-392 1-384 (395) 76 protein:vir:96579 Length: 576 100.0 3.4E-63 2.1E-66 363.0 37.5 390 1-392 27-514 (576) 77 protein:vir:100691 Length: 535 100.0 5E-63 3.1E-66 362.2 35.5 387 3-392 1-493 (535) 78 protein:vir:3153 Length: 467 # 100.0 1.6E-62 1E-65 359.3 36.5 347 46-392 1-438 (467) 79 protein:vir:98643 Length: 395 100.0 2E-62 1.2E-65 358.9 31.9 362 3-392 1-394 (395) 80 protein:vir:99312 Length: 563 100.0 2.5E-60 1.6E-63 347.3 36.3 388 1-392 23-516 (563) 81 protein:vir:95599 Length: 563 100.0 2.5E-60 1.6E-63 347.3 36.3 388 1-392 23-516 (563) 82 protein:vir:94002 Length: 378 100.0 9.8E-61 6.1E-64 349.6 31.4 328 3-392 1-366 (378) 83 protein:vir:93867 Length: 378 100.0 1.4E-60 8.6E-64 348.8 31.8 328 3-392 1-372 (378) 84 protein:vir:79772 Length: 648 100.0 1.4E-59 8.7E-63 343.2 37.0 385 1-392 32-479 (648) 85 protein:vir:1661 Length: 378 # 100.0 1.7E-59 1E-62 342.8 31.5 328 3-392 1-372 (378) 86 protein:vir:94869 Length: 378 100.0 2.1E-58 1.3E-61 336.7 31.3 325 3-389 1-378 (378) 87 protein:vir:858 Length: 378 # 100.0 2.8E-58 1.8E-61 336.1 31.9 328 3-392 1-372 (378) 88 protein:vir:99452 Length: 651 100.0 2.4E-55 1.5E-58 320.1 32.3 382 3-392 1-530 (651) 89 protein:vir:78641 Length: 278 100.0 3.4E-54 2.1E-57 313.7 29.3 259 67-333 1-278 (278) 90 protein:vir:79150 Length: 368 100.0 1.4E-50 8.5E-54 294.0 28.2 335 3-352 1-368 (368) 91 protein:vir:79207 Length: 351 100.0 2E-49 1.3E-52 287.5 30.8 311 3-340 1-351 (351) 92 protein:vir:103971 Length: 376 100.0 3.2E-49 2E-52 286.4 31.4 316 1-340 24-376 (376) 93 protein:vir:98567 Length: 340 100.0 3.2E-49 2E-52 286.4 30.8 310 3-337 1-340 (340) 94 protein:vir:4698 Length: 251 # 100.0 4.3E-50 2.7E-53 291.2 24.8 240 3-252 1-251 (251) 95 protein:vir:100328 Length: 346 100.0 1.8E-49 1.1E-52 287.8 27.8 319 3-338 1-346 (346) 96 protein:vir:78191 Length: 351 100.0 1E-48 6.3E-52 283.7 30.7 311 3-340 1-351 (351) 97 protein:vir:267 Length: 348 # 100.0 1E-48 6.4E-52 283.6 28.8 320 1-345 1-348 (348) 98 protein:vir:3780 Length: 345 # 100.0 8E-48 5E-51 278.8 28.8 319 3-343 1-345 (345) 99 protein:vir:3743 Length: 345 # 100.0 2.7E-47 1.7E-50 275.9 30.9 309 3-335 1-345 (345) 100 protein:vir:5691 Length: 344 # 100.0 9.3E-48 5.8E-51 278.4 28.2 312 3-338 1-344 (344) 101 protein:vir:6058 Length: 344 # 100.0 8.1E-48 5E-51 278.8 27.5 314 3-338 1-344 (344) 102 protein:vir:1150 Length: 350 # 100.0 3.6E-47 2.3E-50 275.2 29.7 307 3-333 1-350 (350) 103 protein:vir:78749 Length: 337 100.0 6.4E-47 4E-50 273.8 28.7 309 9-349 1-337 (337) 104 protein:vir:2013 Length: 344 # 100.0 1.6E-46 1E-49 271.6 27.6 315 3-339 1-344 (344) 105 protein:vir:98853 Length: 219 100.0 1.8E-38 1.1E-41 227.5 21.8 202 132-337 1-219 (219) 106 protein:vir:5249 Length: 437 # 99.9 6.9E-24 4.3E-27 147.5 30.0 369 3-392 1-436 (437) 107 protein:vir:107742 Length: 537 99.8 4.1E-20 2.5E-23 126.9 27.8 379 1-392 23-512 (537) 108 protein:vir:79647 Length: 435 99.8 8.3E-20 5.1E-23 125.2 28.9 376 3-389 1-435 (435) 109 protein:vir:99563 Length: 862 99.8 2.2E-19 1.4E-22 122.9 26.2 373 1-392 91-545 (862) 110 protein:vir:104338 Length: 422 99.8 1.5E-18 9.4E-22 118.3 28.3 365 1-392 3-421 (422) 111 protein:vir:107662 Length: 427 99.8 4.9E-19 3E-22 121.0 24.0 360 3-392 1-417 (427) 112 protein:vir:94049 Length: 532 99.7 1.2E-17 7.4E-21 113.4 28.2 380 1-392 32-505 (532) 113 protein:vir:79538 Length: 502 99.7 3.8E-17 2.3E-20 110.6 30.5 389 3-392 1-495 (502) 114 protein:vir:80040 Length: 461 99.7 3.7E-18 2.3E-21 116.2 24.9 375 3-387 1-461 (461) 115 protein:vir:96068 Length: 765 99.7 6.1E-18 3.8E-21 115.0 25.6 380 1-392 39-527 (765) 116 protein:vir:108215 Length: 469 99.7 6.3E-16 3.9E-19 103.9 32.8 372 5-392 1-459 (469) 117 protein:vir:99853 Length: 488 99.6 3E-14 1.9E-17 94.7 32.6 361 9-392 1-407 (488) 118 protein:vir:79063 Length: 491 99.6 3.3E-14 2.1E-17 94.5 32.7 367 1-392 1-420 (491) 119 protein:vir:99232 Length: 526 99.6 1.1E-13 6.7E-17 91.7 32.7 371 3-392 1-446 (526) 120 protein:vir:103860 Length: 528 99.6 9.5E-14 5.9E-17 92.0 32.1 370 3-392 1-432 (528) 121 protein:vir:107880 Length: 491 99.6 1.6E-13 9.6E-17 90.8 33.1 365 1-392 1-420 (491) 122 protein:vir:389 Length: 530 # 99.6 1.1E-13 6.7E-17 91.7 31.6 388 1-392 1-523 (530) 123 protein:vir:79233 Length: 526 99.5 3E-13 1.8E-16 89.3 31.7 371 3-392 1-434 (526) 124 protein:vir:95542 Length: 548 99.5 3.7E-14 2.3E-17 94.2 26.6 388 3-392 1-508 (548) 125 protein:vir:96738 Length: 505 99.5 4.2E-14 2.6E-17 93.9 25.7 386 1-392 6-503 (505) 126 protein:vir:3420 Length: 533 # 99.5 5.8E-13 3.6E-16 87.7 31.3 389 1-392 1-526 (533) 127 protein:vir:1986 Length: 512 # 99.5 1E-12 6.4E-16 86.3 32.1 368 2-392 1-435 (512) 128 protein:vir:79511 Length: 448 99.5 7.7E-13 4.8E-16 87.0 30.0 372 1-392 1-436 (448) 129 protein:vir:6382 Length: 553 # 99.4 1.8E-12 1.1E-15 85.0 29.5 391 2-392 1-545 (553) 130 protein:vir:77981 Length: 448 99.4 3.3E-12 2E-15 83.5 30.9 369 3-392 1-430 (448) 131 protein:vir:10321 Length: 495 99.4 4.7E-12 2.9E-15 82.7 28.8 381 3-392 1-488 (495) 132 protein:vir:98816 Length: 446 99.3 1.5E-11 9.5E-15 79.9 27.0 360 1-380 1-446 (446) 133 protein:vir:105782 Length: 449 99.2 2.3E-11 1.4E-14 78.9 24.5 362 1-391 1-449 (449) 134 protein:vir:95254 Length: 488 99.2 6.9E-10 4.3E-13 70.8 31.0 365 3-392 1-477 (488) 135 protein:vir:78161 Length: 355 99.2 2E-10 1.2E-13 73.8 25.8 276 110-392 1-330 (355) 136 protein:vir:106716 Length: 698 99.1 1.1E-10 6.8E-14 75.2 20.9 376 1-392 64-546 (698) 137 protein:vir:78589 Length: 695 99.0 4.4E-10 2.7E-13 71.9 22.1 376 1-392 64-548 (695) 138 protein:vir:101541 Length: 694 99.0 6.5E-10 4E-13 71.0 22.8 376 1-392 63-552 (694) 139 protein:vir:3648 Length: 695 # 99.0 4.8E-10 3E-13 71.7 21.7 376 1-392 64-553 (695) 140 protein:vir:98444 Length: 434 98.9 2.8E-09 1.8E-12 67.5 23.3 348 24-392 1-432 (434) 141 protein:vir:9568 Length: 410 # 98.8 3.6E-08 2.2E-11 61.4 23.8 347 6-386 1-410 (410) 142 protein:vir:7768 Length: 484 # 98.7 7.9E-08 4.9E-11 59.5 25.9 373 1-392 16-478 (484) 143 protein:vir:104082 Length: 485 98.7 5.3E-08 3.3E-11 60.5 23.5 373 1-392 17-473 (485) 144 protein:vir:99916 Length: 504 98.7 9E-08 5.6E-11 59.2 26.5 377 3-392 1-486 (504) 145 protein:vir:7987 Length: 456 # 98.7 9.8E-09 6.1E-12 64.5 18.5 381 1-392 9-452 (456) 146 protein:vir:102602 Length: 456 98.7 8.3E-08 5.1E-11 59.4 23.0 380 1-392 9-452 (456) 147 protein:vir:105819 Length: 456 98.7 8.3E-08 5.1E-11 59.4 23.0 380 1-392 9-452 (456) 148 protein:vir:80680 Length: 441 98.7 1.3E-07 8E-11 58.3 24.2 363 1-390 8-441 (441) 149 protein:vir:2427 Length: 485 # 98.7 1.3E-07 8.1E-11 58.3 26.0 375 1-392 4-479 (485) 150 protein:vir:94742 Length: 409 98.6 2.2E-07 1.4E-10 57.1 26.6 343 1-372 1-409 (409) 151 protein:vir:4223 Length: 486 # 98.5 2.9E-07 1.8E-10 56.4 22.8 369 1-392 17-477 (486) 152 protein:vir:99088 Length: 629 98.5 1.1E-07 6.8E-11 58.8 20.0 382 1-392 1-516 (629) 153 protein:vir:102426 Length: 631 98.5 4.5E-08 2.8E-11 60.9 17.4 385 1-392 1-513 (631) 154 protein:vir:106491 Length: 646 98.5 3.8E-07 2.4E-10 55.8 22.3 378 3-392 1-482 (646) 155 protein:vir:8654 Length: 629 # 98.5 1.2E-07 7.6E-11 58.5 19.3 382 1-392 1-489 (629) 156 protein:vir:2341 Length: 488 # 98.5 4.8E-07 3E-10 55.2 23.1 372 1-392 12-485 (488) 157 protein:vir:80959 Length: 499 98.4 9.2E-07 5.7E-10 53.7 23.6 380 1-391 1-499 (499) 158 protein:vir:5839 Length: 533 # 98.4 1E-06 6.2E-10 53.5 22.3 384 1-392 1-501 (533) 159 protein:vir:103219 Length: 201 98.3 4.3E-08 2.7E-11 60.9 13.7 172 213-388 1-201 (201) 160 protein:vir:99072 Length: 479 98.3 1.3E-06 8.1E-10 52.8 25.8 367 1-392 22-468 (479) 161 protein:vir:1634 Length: 409 # 98.2 2.7E-06 1.7E-09 51.1 29.0 344 1-372 1-409 (409) 162 protein:vir:106027 Length: 629 98.2 2.9E-06 1.8E-09 51.0 21.1 384 1-392 1-511 (629) 163 protein:vir:9751 Length: 422 # 98.2 3.3E-06 2.1E-09 50.6 28.1 352 1-384 1-422 (422) 164 protein:vir:3028 Length: 500 # 98.1 3.7E-06 2.3E-09 50.4 23.7 380 3-392 1-493 (500) 165 protein:vir:9815 Length: 500 # 98.1 3.7E-06 2.3E-09 50.4 23.7 380 3-392 1-493 (500) 166 protein:vir:38 Length: 496 # N 98.1 3.9E-06 2.4E-09 50.2 25.7 377 1-388 1-496 (496) 167 protein:vir:79703 Length: 505 98.1 5.3E-06 3.3E-09 49.5 24.7 373 3-386 1-505 (505) 168 protein:vir:78907 Length: 518 98.0 7.4E-06 4.6E-09 48.7 24.3 378 3-392 1-509 (518) 169 protein:vir:97900 Length: 639 98.0 7.5E-06 4.6E-09 48.7 19.3 386 1-392 1-495 (639) 170 protein:vir:107517 Length: 639 98.0 7.5E-06 4.6E-09 48.7 19.3 386 1-392 1-495 (639) 171 protein:vir:2500 Length: 501 # 98.0 8.6E-06 5.3E-09 48.4 26.8 361 1-392 31-491 (501) 172 protein:vir:2732 Length: 501 # 98.0 9E-06 5.6E-09 48.3 28.8 375 1-392 43-500 (501) 173 protein:vir:4073 Length: 279 # 97.9 9.6E-08 6E-11 59.0 8.1 265 51-369 1-279 (279) 174 protein:vir:78227 Length: 480 97.9 9.8E-06 6.1E-09 48.0 25.0 371 1-392 7-471 (480) 175 protein:vir:95113 Length: 474 97.9 1.1E-05 6.7E-09 47.8 24.8 368 5-392 1-470 (474) 176 protein:vir:97376 Length: 320 97.9 3E-07 1.8E-10 56.4 10.2 309 3-390 1-320 (320) 177 protein:vir:96494 Length: 501 97.9 1.2E-05 7.6E-09 47.5 24.2 375 1-392 43-493 (501) 178 protein:vir:4898 Length: 502 # 97.9 1.3E-05 7.9E-09 47.4 29.0 379 1-392 44-501 (502) 179 protein:vir:98883 Length: 517 97.8 1.8E-05 1.1E-08 46.6 25.6 378 3-392 1-513 (517) 180 protein:vir:97447 Length: 474 97.8 1.8E-05 1.1E-08 46.6 25.1 365 5-392 1-464 (474) 181 protein:vir:94498 Length: 474 97.8 1.8E-05 1.1E-08 46.6 25.1 365 5-392 1-464 (474) 182 protein:vir:78537 Length: 480 97.7 2.3E-05 1.4E-08 46.0 26.2 371 1-392 7-471 (480) 183 protein:vir:5961 Length: 503 # 97.7 2.5E-05 1.6E-08 45.8 29.7 372 1-392 33-491 (503) 184 protein:vir:94101 Length: 474 97.7 2.8E-05 1.7E-08 45.5 28.5 367 1-392 19-469 (474) 185 protein:vir:105889 Length: 474 97.7 2.8E-05 1.7E-08 45.5 28.5 367 1-392 19-469 (474) 186 protein:vir:1587 Length: 508 # 97.7 3E-05 1.9E-08 45.4 25.5 374 3-389 1-508 (508) 187 protein:vir:93747 Length: 472 97.7 3.2E-05 2E-08 45.2 27.6 366 1-392 28-462 (472) 188 protein:vir:733 Length: 453 # 97.6 3.4E-05 2.1E-08 45.1 24.2 379 1-392 1-446 (453) 189 protein:vir:97336 Length: 492 97.6 4.3E-05 2.7E-08 44.5 26.4 366 1-392 48-482 (492) 190 protein:vir:106639 Length: 481 97.5 4.7E-05 2.9E-08 44.3 23.1 381 1-392 30-478 (481) 191 protein:vir:4782 Length: 522 # 97.5 5.4E-05 3.4E-08 44.0 26.3 381 3-392 1-517 (522) 192 protein:vir:79043 Length: 479 97.5 5.5E-05 3.4E-08 44.0 25.5 368 1-392 7-476 (479) 193 protein:vir:8184 Length: 474 # 97.5 5.5E-05 3.4E-08 43.9 27.5 374 1-389 19-474 (474) 194 protein:vir:1236 Length: 483 # 97.5 5.6E-05 3.5E-08 43.9 27.6 366 1-392 39-473 (483) 195 protein:vir:96839 Length: 474 97.4 7.6E-05 4.7E-08 43.2 22.5 360 1-392 30-467 (474) 196 protein:vir:94805 Length: 492 97.3 9.1E-05 5.7E-08 42.7 27.1 367 1-392 48-483 (492) 197 protein:vir:9871 Length: 429 # 97.3 9.3E-05 5.7E-08 42.7 25.1 361 1-392 5-428 (429) 198 protein:vir:95806 Length: 440 97.1 0.00016 9.8E-08 41.4 27.8 368 1-389 1-440 (440) 199 protein:vir:99522 Length: 470 97.1 0.00016 1E-07 41.4 25.9 372 3-389 1-470 (470) 200 protein:vir:95899 Length: 474 96.8 0.00031 1.9E-07 39.8 26.4 371 1-392 31-468 (474) 201 protein:vir:96266 Length: 474 96.8 0.00031 1.9E-07 39.8 26.4 371 1-392 31-468 (474) 202 protein:vir:96179 Length: 468 96.8 0.00031 1.9E-07 39.8 24.5 374 1-391 30-468 (468) 203 protein:vir:9306 Length: 511 # 96.8 0.00035 2.2E-07 39.5 27.2 381 1-392 44-501 (511) 204 protein:vir:105292 Length: 478 96.7 0.00041 2.6E-07 39.1 27.1 366 1-392 30-470 (478) 205 protein:vir:3964 Length: 453 # 96.6 0.00049 3.1E-07 38.7 28.5 368 1-392 17-450 (453) 206 protein:vir:102950 Length: 471 96.4 0.00067 4.2E-07 38.0 22.0 370 1-392 9-471 (471) 207 protein:vir:94546 Length: 506 96.4 0.00067 4.2E-07 38.0 23.5 380 1-392 1-494 (506) 208 protein:vir:97171 Length: 512 96.4 0.00071 4.4E-07 37.8 28.0 381 1-392 40-502 (512) 209 protein:vir:96240 Length: 511 96.3 0.00078 4.9E-07 37.6 27.9 381 1-392 44-501 (511) 210 protein:vir:96366 Length: 511 95.9 0.0013 8.1E-07 36.4 26.9 381 1-392 44-501 (511) 211 protein:vir:78805 Length: 511 95.9 0.0013 8.1E-07 36.4 26.9 381 1-392 44-501 (511) 212 protein:vir:103951 Length: 511 95.9 0.0013 8.3E-07 36.3 28.2 381 1-392 44-507 (511) 213 protein:vir:106571 Length: 499 95.8 0.0014 8.5E-07 36.3 23.4 371 1-392 20-481 (499) 214 protein:vir:99781 Length: 511 95.7 0.0016 9.9E-07 35.9 26.6 381 1-392 44-501 (511) 215 protein:vir:107112 Length: 478 95.2 0.0026 1.6E-06 34.7 28.4 372 1-392 30-470 (478) 216 protein:vir:3609 Length: 452 # 94.0 0.0057 3.6E-06 32.9 30.0 358 1-389 21-452 (452) 217 protein:vir:78083 Length: 537 90.8 0.019 1.2E-05 30.0 29.5 368 1-392 11-513 (537) 218 protein:vir:102668 Length: 547 89.7 0.025 1.5E-05 29.4 24.5 330 1-392 32-474 (547) 219 protein:vir:94956 Length: 452 88.0 0.035 2.2E-05 28.5 28.6 360 3-392 1-448 (452) 220 protein:vir:104500 Length: 537 87.2 0.04 2.5E-05 28.2 20.5 373 1-392 1-513 (537) 221 protein:vir:102330 Length: 451 86.6 0.045 2.8E-05 28.0 21.5 363 1-384 5-451 (451) 222 protein:vir:94709 Length: 522 85.4 0.053 3.3E-05 27.6 26.1 341 1-392 38-452 (522) 223 protein:vir:105461 Length: 470 84.4 0.061 3.8E-05 27.2 28.1 363 1-390 5-470 (470) 224 protein:vir:78393 Length: 489 81.5 0.085 5.3E-05 26.5 27.5 374 1-392 22-481 (489) 225 protein:vir:101806 Length: 516 76.0 0.14 8.7E-05 25.3 19.5 374 3-389 1-516 (516) 226 protein:vir:101189 Length: 516 76.0 0.14 8.7E-05 25.3 19.5 374 3-389 1-516 (516) 227 protein:vir:97265 Length: 513 72.3 0.18 0.00011 24.6 30.4 365 1-392 1-493 (513) 228 protein:vir:102239 Length: 527 63.7 0.31 0.00019 23.3 28.2 362 3-392 1-526 (527) 229 protein:vir:104892 Length: 558 63.5 0.32 0.0002 23.3 21.5 377 1-392 3-529 (558) 230 protein:vir:96783 Length: 488 63.5 0.32 0.0002 23.3 26.8 370 1-389 14-488 (488) 231 protein:vir:101494 Length: 527 63.4 0.32 0.0002 23.3 28.2 362 3-392 1-526 (527) 232 protein:vir:80453 Length: 535 59.2 0.4 0.00025 22.8 24.2 368 1-392 32-524 (535) 233 protein:vir:3361 Length: 535 # 59.1 0.4 0.00025 22.8 25.8 343 1-392 40-463 (535) 234 protein:vir:1538 Length: 535 # 57.1 0.44 0.00027 22.5 25.7 343 1-392 40-463 (535) 235 protein:vir:103765 Length: 549 57.0 0.44 0.00028 22.5 23.5 336 1-392 38-475 (549) 236 protein:vir:100598 Length: 516 53.6 0.53 0.00033 22.1 19.9 374 3-389 1-516 (516) 237 protein:vir:9922 Length: 489 # 50.8 0.6 0.00037 21.8 26.6 376 1-392 19-486 (489) 238 protein:vir:81017 Length: 521 47.5 0.7 0.00043 21.4 18.3 373 1-379 6-521 (521) 239 protein:vir:98265 Length: 524 45.0 0.79 0.00049 21.2 20.7 382 1-390 1-524 (524) 240 protein:vir:5665 Length: 511 # 40.2 0.98 0.00061 20.6 18.5 375 3-389 1-511 (511) 241 protein:vir:6596 Length: 521 # 37.5 1.1 0.00069 20.3 18.1 373 1-379 6-521 (521) 242 protein:vir:108049 Length: 524 35.8 1.2 0.00075 20.1 18.9 378 1-390 1-524 (524) 243 protein:vir:94572 Length: 535 35.1 1.2 0.00077 20.1 25.0 340 1-392 41-454 (535) 244 protein:vir:95149 Length: 501 34.1 1.3 0.00081 19.9 26.3 370 1-390 1-501 (501) 245 protein:vir:8883 Length: 543 # 33.1 1.4 0.00085 19.8 25.4 339 1-392 40-457 (543) 246 protein:vir:103177 Length: 533 31.9 1.5 0.00091 19.7 23.1 377 1-392 1-525 (533) 247 protein:vir:95014 Length: 491 31.8 1.5 0.00091 19.7 26.9 372 1-392 1-483 (491) 248 protein:vir:106999 Length: 564 30.6 1.6 0.00097 19.5 21.7 376 1-392 1-554 (564) 249 protein:vir:100039 Length: 522 28.6 1.7 0.0011 19.3 22.8 339 3-392 1-446 (522) 250 protein:vir:2198 Length: 536 # 24.9 2.1 0.0013 18.8 26.0 340 1-392 39-454 (536) 251 protein:vir:10447 Length: 536 24.5 2.2 0.0013 18.7 26.0 338 1-392 39-454 (536) 252 protein:vir:6896 Length: 523 # 24.2 2.2 0.0014 18.7 18.4 366 3-379 1-523 (523) 253 protein:vir:105154 Length: 525 21.3 2.6 0.0016 18.3 9.3 374 1-392 45-518 (525) 254 protein:vir:99672 Length: 532 20.5 2.8 0.0017 18.2 25.3 350 1-392 40-466 (532) No 1 >protein:vir:7407 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Probab=100.00 E-value=2.8e-102 Score=577.29 Aligned_cols=392 Identities=100% Similarity=1.441 Sum_probs=377.6 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchhh Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKNQ 80 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~ 80 (392) |+|||||||++....+++..++.++....+..+++.+.+.++..|++++||++|+|++||++||++||++|++++++..+ T Consensus 1 m~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~v~~ia~~ia~lp~~~~~~~~~ 80 (392) T protein:vir:74 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKNQ 80 (392) T ss_pred CcchhhhhhhcccCcccccccccccccCchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhccCceeeccchhh Confidence 99999999999988888888899988888889999999999999999999999999999999999999999999999999 Q ss_pred hhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCcceeeEEE Q lcl|Aclame:pro 81 GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQA 160 (392) Q Consensus 81 ~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (392) .++.+||++||+++||+.++.+++++||||++++|+.+|++++|+|++|++|++..+.+++.++|.++..+...+..+.+ T Consensus 81 ~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~ 160 (392) T protein:vir:74 81 GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQA 160 (392) T ss_pred hhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEecCCccceeEEE Confidence 99999999999999999999999999999999999999999999999999999999999999999998888777888999 Q ss_pred ecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccC Q lcl|Aclame:pro 161 PQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRS 240 (392) Q Consensus 161 ~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (392) ++++|||++++++++..+|+||+.+++..|..+.+++++..++|+||++|+++++++++...+++.++++.+.+.+..|+ T Consensus 161 ~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~~~~~~~~~~~~~~~~~~~~~~n~ 240 (392) T protein:vir:74 161 PQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRS 240 (392) T ss_pred cCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchHHHHHHHHHHHhccccC Confidence 99999999999999988999999999999999999999999999999999999999988777777788888899999999 Q ss_pred CceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 241 GGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISELEY 320 (392) Q Consensus 241 g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p~l~~i~~~l~~ 320 (392) |+++||++|++|++++.+++|+||+|++++++++||++|||||++||+.++++++.++.++|++++|.|++++|++++++ T Consensus 241 g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~e~~~~~~~~~l~p~~~~ie~~l~~ 320 (392) T protein:vir:74 241 GGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISELEY 320 (392) T ss_pred CCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999987778888899999999999999999999999 Q ss_pred HhhhhhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcccccccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 321 KLSDHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAPENTNKKTTGQSNEPVP 392 (392) Q Consensus 321 ~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~~~~~~~~~gd~~~p~p 392 (392) +|++++++|.+.+++.|..++++.+++++++|++|+||+|+++.+.|++|+|+|+.+|++|+++||+|+|+| T Consensus 321 ~l~~~~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~near~~~~~~g~~pne~r~~enl~~~~~Gd~~~p~p 392 (392) T protein:vir:74 321 KLSDHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAPENTNKKTTGQSNEPVP 392 (392) T ss_pred hccchhcccchhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHHHhCCCCccccchhcCCCCCCCCCCCCCCC Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:3989 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116497;genbank:gi:14251130;genbank:GeneID:921299 Probab=100.00 E-value=3.7e-101 Score=571.21 Aligned_cols=392 Identities=100% Similarity=1.439 Sum_probs=377.8 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchhh Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKNQ 80 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~ 80 (392) |+|||||++++....++....+.+++...+..+++.+.+.++..|+.++||++|+|++||++||++||++|++++++..+ T Consensus 1 m~m~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~ 80 (392) T protein:vir:39 1 MILPILNFINQTNDPPEVGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKNQ 80 (392) T ss_pred CcchhhhhhhcccccccccccccccccCchhhhhhhhcCCCCceechHHhhccHHHHHHHHHHHHhhccCceeeccchhh Confidence 99999999999888888889999999899999999999999999999999999999999999999999999999999999 Q ss_pred hhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCcceeeEEE Q lcl|Aclame:pro 81 GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQA 160 (392) Q Consensus 81 ~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (392) .++.+||++||+++||+.++.+++++||||++++|+.+|++++|+|++|++|++..+.+++.++|.+++.+...+..+.+ T Consensus 81 ~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 160 (392) T protein:vir:39 81 GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQA 160 (392) T ss_pred hHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEecCcccceeEEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888888999 Q ss_pred ecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccC Q lcl|Aclame:pro 161 PQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRS 240 (392) Q Consensus 161 ~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (392) ++++|||++++++++..+|+||+.++...+..+.+++++..++|+||++|+++++++++...+++.++++.+.+.+..++ T Consensus 161 ~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (392) T protein:vir:39 161 PQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRS 240 (392) T ss_pred ccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchHHHHHHHHHHHhccccC Confidence 99999999999999888999999999999999999999999999999999999999988777787788888899999999 Q ss_pred CceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 241 GGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISELEY 320 (392) Q Consensus 241 g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p~l~~i~~~l~~ 320 (392) |++++|++|++|++++.+++|+||+|++++++++||++|||||++||+.++++++.++.++|++++|.|++++|++++++ T Consensus 241 g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~~~~~~~~~f~~~~l~P~~~~ie~~l~~ 320 (392) T protein:vir:39 241 GGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISELEY 320 (392) T ss_pred CCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999887778888899999999999999999999999 Q ss_pred HhhhhhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcccccccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 321 KLSDHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAPENTNKKTTGQSNEPVP 392 (392) Q Consensus 321 ~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~~~~~~~~~gd~~~p~p 392 (392) +|++++++|.+.+++.|..++++.+++++++|++|+||+|+++.+.|++|+|+|+.+++||+++||+|+|+| T Consensus 321 ~L~~~~~~d~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~g~~p~e~r~~e~l~~~~~Gd~~~p~p 392 (392) T protein:vir:39 321 KLSDHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAPENTNKKTTGQSNEPVP 392 (392) T ss_pred hccccccccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCccccchhcCCCCCCCCCCCCCCC Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 No 3 >protein:vir:1023 Length: 392 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076677;genbank:gi:13095786;genbank:GeneID:920364 Probab=100.00 E-value=3.7e-101 Score=571.21 Aligned_cols=392 Identities=100% Similarity=1.439 Sum_probs=377.8 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchhh Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKNQ 80 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~ 80 (392) |+|||||++++....++....+.+++...+..+++.+.+.++..|+.++||++|+|++||++||++||++|++++++..+ T Consensus 1 m~m~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~ 80 (392) T protein:vir:10 1 MILPILNFINQTNDPPEVGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKNQ 80 (392) T ss_pred CcchhhhhhhcccccccccccccccccCchhhhhhhhcCCCCceechHHhhccHHHHHHHHHHHHhhccCceeeccchhh Confidence 99999999999888888889999999899999999999999999999999999999999999999999999999999999 Q ss_pred hhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCcceeeEEE Q lcl|Aclame:pro 81 GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQA 160 (392) Q Consensus 81 ~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (392) .++.+||++||+++||+.++.+++++||||++++|+.+|++++|+|++|++|++..+.+++.++|.+++.+...+..+.+ T Consensus 81 ~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 160 (392) T protein:vir:10 81 GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQA 160 (392) T ss_pred hHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEecCcccceeEEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888888999 Q ss_pred ecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccC Q lcl|Aclame:pro 161 PQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRS 240 (392) Q Consensus 161 ~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (392) ++++|||++++++++..+|+||+.++...+..+.+++++..++|+||++|+++++++++...+++.++++.+.+.+..++ T Consensus 161 ~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (392) T protein:vir:10 161 PQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRS 240 (392) T ss_pred ccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchHHHHHHHHHHHhccccC Confidence 99999999999999888999999999999999999999999999999999999999988777787788888899999999 Q ss_pred CceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 241 GGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISELEY 320 (392) Q Consensus 241 g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p~l~~i~~~l~~ 320 (392) |++++|++|++|++++.+++|+||+|++++++++||++|||||++||+.++++++.++.++|++++|.|++++|++++++ T Consensus 241 g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~~~~~~~~~f~~~~l~P~~~~ie~~l~~ 320 (392) T protein:vir:10 241 GGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISELEY 320 (392) T ss_pred CCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999887778888899999999999999999999999 Q ss_pred HhhhhhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcccccccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 321 KLSDHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAPENTNKKTTGQSNEPVP 392 (392) Q Consensus 321 ~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~~~~~~~~~gd~~~p~p 392 (392) +|++++++|.+.+++.|..++++.+++++++|++|+||+|+++.+.|++|+|+|+.+++||+++||+|+|+| T Consensus 321 ~L~~~~~~d~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~g~~p~e~r~~e~l~~~~~Gd~~~p~p 392 (392) T protein:vir:10 321 KLSDHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAPENTNKKTTGQSNEPVP 392 (392) T ss_pred hccccccccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCccccchhcCCCCCCCCCCCCCCC Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 No 4 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=100.00 E-value=5.8e-87 Score=493.36 Aligned_cols=384 Identities=54% Similarity=0.910 Sum_probs=343.7 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchhhhh Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKNQGI 82 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~ 82 (392) ||||++.......+ ...........++.++..+ .++..++.++|+++++|++||++||++||++|++++++..+.+ T Consensus 1 Mglf~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~al~~~~V~~~i~~Ia~~ia~l~~~~~~~~~~~l 76 (384) T protein:vir:49 1 MPIFNITNLATESP--PSNQDSFFDITDPEFLDAL--NGSEWVSAETALKNSDLFSIISQLSNDLATAKITTSRKQLQGI 76 (384) T ss_pred CccccccccCcccc--cccchhhccccchhhcccc--cCCceechhhhhccHHHHHHHHHHHHHHhhCceeeecchhhhh Confidence 99998754332222 1222222333444444433 3467789999999999999999999999999999999999999 Q ss_pred cccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCcceeeEEEec Q lcl|Aclame:pro 83 IDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQAPQ 162 (392) Q Consensus 83 ~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (392) +.+||++||+++|++.++.+++++||+|++++|+.+|++++|+|++|+.|++..+.+++.++|.+.+.+...+..+.+++ T Consensus 77 ~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 156 (384) T protein:vir:49 77 VDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNQNGLYYNITFDDPRIPPKQHVPQ 156 (384) T ss_pred hhccCCCCCHHHHHHHHHHHhhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEecCccccceeEecC Confidence 99999999999999999999999999999999999999999999999999999988889999999888877788899999 Q ss_pred ceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCc Q lcl|Aclame:pro 163 SDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGG 242 (392) Q Consensus 163 ~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 242 (392) ++|||++++++++..+|+||+.++...+..+.+++++..++|+||++|++++++++....+++ .+++...+.+..|+|+ T Consensus 157 ~eVih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~-~~~~~~~~~~~~n~~~ 235 (384) T protein:vir:49 157 GDILHFRLLSVDGGLTSVSPLMALGRELNIQKASDKLTLNALKNALNANGILKIKGGGLLDFK-TKQSRSRQAMKQMQGG 235 (384) T ss_pred ccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCChHHH-HHHHHHHHhcccCCcc Confidence 999999999998888999999999999999999999999999999999999999987665544 4455666778889999 Q ss_pred eeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 243 PVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISELEYKL 322 (392) Q Consensus 243 ~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p~l~~i~~~l~~~l 322 (392) ++++++|++|++++.++.|+|++|.+++++++||++|||||++||++...+++.++.++++..++.|++.+|.++++.+| T Consensus 236 ~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~pi~~~i~~~l 315 (384) T protein:vir:49 236 PLVLDDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESVVGGEGDKQSSLEMIYNIYFKAVSRFLRPFVSELSKKL 315 (384) T ss_pred ceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 99999999999999999999999999999999999999999999987767778888999999999999999999999999 Q ss_pred hhhhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcccccccCCCCCCCCCCCCCC Q lcl|Aclame:pro 323 SDHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAPENTNKKTTGQSNEPV 391 (392) Q Consensus 323 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~~~~~~~~~gd~~~p~ 391 (392) .+++..|.....+.+...+++.++.++++|++|++|+|+++...|++++|+|+.++++|++|||+++-= T Consensus 316 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~e~~~~l~~~g~~~ne~r~~~~~~p~~gGd~~~~~ 384 (384) T protein:vir:49 316 SCEVDADILPAVDPTGSNYIGLINSMVKTGTLAQNQGLYVLQQAEILPKDLPEGETDSTLKGGETNEQY 384 (384) T ss_pred chhhhhhhhhhhhccchHHHHHHHHHhhcCcccHHHHHHHHhhCCCCChhHHHHcCCCCCCCCCCCCCC Confidence 999988888888888899999999999999999999999999999999999999999999999998866 No 5 >protein:vir:4952 Length: 386 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049928;genbank:gi:9632899;genbank:GeneID:1262075 Probab=100.00 E-value=3.4e-86 Score=489.12 Aligned_cols=384 Identities=55% Similarity=0.907 Sum_probs=337.9 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchhhhh Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKNQGI 82 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~ 82 (392) ||||++.++.....+.. ...+.......++. ....+..+++++||++|+|++||++||++||++|++++++..+.+ T Consensus 1 M~~f~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~l 76 (386) T protein:vir:49 1 MPIFNITNLATESPPIN--QESFFDIADSDFLA--SLNSSEWVSAENALKNSDLFSIISQLSNDLATAKITTSRKQLQGI 76 (386) T ss_pred CchhhhhccCCCCcccc--hhhhhhhhhccccc--cccCCceechhhhhccHHHHHHHHHHHHHhhhCceeeccchhhhh Confidence 99998876644332221 11111111111111 123467899999999999999999999999999999999999999 Q ss_pred cccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCcceeeEEEec Q lcl|Aclame:pro 83 IDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQAPQ 162 (392) Q Consensus 83 ~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (392) +.+||++||+++||+.++.+++++||||++++|+.+|++++|+|++|+.|++..+.+++.++|.+++.+...+..+.+++ T Consensus 77 ~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~i~~~~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 156 (386) T protein:vir:49 77 VDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNDNGRDMKWEYLRPSQVSFNRLDNQNGLYYNITFDDPHIAPKQHVPQ 156 (386) T ss_pred hhccCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEecCceeEEEEcCCCceEEEEEEEcCccccceeEEcc Confidence 99999999999999999999999999999999999999999999999999999999889888888887777778889999 Q ss_pred ceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCc Q lcl|Aclame:pro 163 SDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGG 242 (392) Q Consensus 163 ~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 242 (392) ++|||++++++++..+|+||+..+...+..+.++++++.++|+||++|++++++++...+++++.... ....+..|+|+ T Consensus 157 ~evih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~~~-~~~~~~~n~g~ 235 (386) T protein:vir:49 157 NDILHFRLLSVDGGLTSVSPLMALGREFNIQKASDKLTISALKNALNANGILKIKGGGLLDFKTKVSR-SRQAMKQMQGG 235 (386) T ss_pred ccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEeCCCCChHHHHHHHH-HHHHhccCCCC Confidence 99999999999988899999999999999999999999999999999999999998776665443322 23345678999 Q ss_pred eeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 243 PVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISELEYKL 322 (392) Q Consensus 243 ~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p~l~~i~~~l~~~l 322 (392) ++++++|++|++++.+++|+||+|++++++++||++|||||++||+..+++++.++.++++.++|.|++++|+++|+++| T Consensus 236 ~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~~~~~~~~i~~~l~~i~~~~~~~l 315 (386) T protein:vir:49 236 PLVLDDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESIVGGDGDQQSSLEMIYNIYFKSVSRYLRPFVSEMSKKL 315 (386) T ss_pred ceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 99999999999999999999999999999999999999999999987777778888999999999999999999999999 Q ss_pred hhhhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcccccccC--CCCCCCCCCCCCC Q lcl|Aclame:pro 323 SDHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAPEN--TNKKTTGQSNEPV 391 (392) Q Consensus 323 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~~~--~~~~~~gd~~~p~ 391 (392) ++++++|...+++.|..++++.+++++++|++|+||+|+++.+.|+.|+|+|..++ .++.+|||.++-- T Consensus 316 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~~~~~~~~~~~~~~~~~~~~gGd~~~~~ 386 (386) T protein:vir:49 316 SCEVDVDISPAVDPTGSNYISLINSMVKSGTLAQNQGLYILQQAEILPKELPDGKNPNRTSLKGGEINEQD 386 (386) T ss_pred cchhcccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHhhCCCCCCcCcchhccCCCCCCCCCCCCCC Confidence 99999999999999999999999999999999999999999999999999999886 4677888877666 No 6 >protein:vir:4854 Length: 386 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049394;genbank:gi:9632422;genbank:GeneID:1258515 Probab=100.00 E-value=3.8e-86 Score=488.87 Aligned_cols=384 Identities=54% Similarity=0.892 Sum_probs=337.9 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchhhhh Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKNQGI 82 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~ 82 (392) ||||++.++....+...... +.......++..+ ..+..++.++++++|+|++||++||++||+||++++++..+.+ T Consensus 1 M~~f~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~l 76 (386) T protein:vir:48 1 MPIFNITNLATESPPISQGG--FFDITDPDFLSTL--NGSEWVSAESALRNSDLFSIINQLSNDLATVKLTASRKQLQGI 76 (386) T ss_pred Cccccccccccccccccccc--ccccccchhcccc--cCCceechhhhhcchHHHHHHHHHHHhhccCceeeccchhHHH Confidence 99999877655444332222 1222223333322 3466789999999999999999999999999999999999999 Q ss_pred cccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCcceeeEEEec Q lcl|Aclame:pro 83 IDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQAPQ 162 (392) Q Consensus 83 ~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (392) +.+||++||+++||+.++.+++++||+|++++|+.+|++++|+|++|+.|++..+.+++.++|.++.++...+..+.+++ T Consensus 77 ~~~pN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 156 (386) T protein:vir:48 77 IDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNKDGIYYNITFDDPRIPPKQHVPQ 156 (386) T ss_pred hhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEecCceeEEEEcCCCceEEEEEEecCccccceeEecC Confidence 99999999999999999999999999999999999999999999999999999998888888888888777777889999 Q ss_pred ceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCc Q lcl|Aclame:pro 163 SDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGG 242 (392) Q Consensus 163 ~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 242 (392) ++|||++++++++..+|+||+..+...+..+.++++++.++|+||++|++++++++....+++++ .+.....+..++|+ T Consensus 157 ~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~ii~~~~~~~~e~~~~-~~~~~~~~~~n~g~ 235 (386) T protein:vir:48 157 GDVLHFKLLSVDGGLTSVSPLMALSRELNIQKASDKLTLNSLKNALNANGILKIKGGGLLDFKTK-LSRSRQAMKQMQGG 235 (386) T ss_pred ccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHHHHHH-HHHHHHHhhcCCCC Confidence 99999999999998899999999999999999999999999999999999999998766554433 22333456678999 Q ss_pred eeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 243 PVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISELEYKL 322 (392) Q Consensus 243 ~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p~l~~i~~~l~~~l 322 (392) +++|++|++|++++.+++|+||+|++++++++||++|||||.+||+.++++++.++..+|++.+|.|+++.|+++|+++| T Consensus 236 ~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~l 315 (386) T protein:vir:48 236 PLVLDDLEEFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPENVVGGQGDQQSSLEMSLDLYNKAVSRYLRPFLSELSQKL 315 (386) T ss_pred ceecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhh Confidence 99999999999999999999999999999999999999999999987666667788899999999999999999999999 Q ss_pred hhhhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcccccccC--CCCCCCCCCCCCC Q lcl|Aclame:pro 323 SDHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAPEN--TNKKTTGQSNEPV 391 (392) Q Consensus 323 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~~~--~~~~~~gd~~~p~ 391 (392) ++++++|....++.+...+++.+++++++|++|+||+|++++..|+.++|+|..++ .+|..|||.+..= T Consensus 316 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~lg~~~~~~~~~~~~~~~~~~~~~gGd~~~~~ 386 (386) T protein:vir:48 316 SCDVDADILPAVDPTGSNSVSRINSMVKSGTLAQNQGLYILQQAEILPKELPEGENPNKTTLKGGEINGED 386 (386) T ss_pred cchhhcchhhhhccChHHHHHHHHHHHhCCCcCHHHHHHHhhcCCCCCccchhhcCCCCCccCCCCCCCCC Confidence 99999999999999999999999999999999999999999999999999998885 4577777665544 No 7 >protein:vir:4828 Length: 382 # NCBI annotation: ORF24 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID:1262630 Probab=100.00 E-value=5.8e-86 Score=487.86 Aligned_cols=381 Identities=54% Similarity=0.886 Sum_probs=336.8 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchhhhh Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKNQGI 82 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~ 82 (392) ||||+++.++..... ..........++. ...++..+++++++++|+|++||++||++||++|++++++..+.+ T Consensus 1 Mg~f~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~v~~~~~l~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~L 73 (382) T protein:vir:48 1 MPIFNLATESPPDNQ-----GGFFDVVDSDFLA--SLKGNEWVSAETALRNSDLFSIINQLSNDLATVKLITSRKKLQGI 73 (382) T ss_pred CccccccccCCcccc-----cccccchhhhccc--cccCCcccchHhhhccHHHHHHHHHHHHhhccCceeeecchhhhh Confidence 999987655432211 1111122222222 223467799999999999999999999999999999999999999 Q ss_pred cccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCcceeeEEEec Q lcl|Aclame:pro 83 IDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQAPQ 162 (392) Q Consensus 83 ~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (392) +.+||++||+++|++.++.+|+++||||++++|+.+|++++|+|++|+.|++..+.+++.++|.++.++...+..+.+++ T Consensus 74 ~~~PN~~~t~~~f~~~l~~~l~l~Gna~~~i~rd~~G~~~~l~~i~~~~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 153 (382) T protein:vir:48 74 VDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNKDGIYYNITFDDPRIPPKQHVPQ 153 (382) T ss_pred hhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCCeEEEEEEecCccccceeEEcC Confidence 99999999999999999999999999999999999999999999999999999999999888888888877777889999 Q ss_pred ceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCc Q lcl|Aclame:pro 163 SDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGG 242 (392) Q Consensus 163 ~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 242 (392) ++|||++++++++..+|+||+.++...+....+++++..++|+||++|++++++++....+++.+ .......+..|+|+ T Consensus 154 ~evih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~~~e~~~~-~~~~~~~~~~n~g~ 232 (382) T protein:vir:48 154 NDVLHFRLLSVDGGMTSVSPLMALSRELDIQKASGNLTINSLKNALNANGILKIKGGGLLDFKTK-LSRSRQAMKQMQGG 232 (382) T ss_pred ccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCChHHHHH-HHHHHHhhccCCCC Confidence 99999999999988899999999999999999999999999999999999999988766554333 22333446678899 Q ss_pred eeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 243 PVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISELEYKL 322 (392) Q Consensus 243 ~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p~l~~i~~~l~~~l 322 (392) ++|+++|++|++++.++.|+|++|.+++.+++||++|||||.+||+.++++++.++.++|++.+|.|++++|+++|+++| T Consensus 233 ~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVp~~~lg~~~~~~~~~~~~~~~~~~~l~p~~~~i~~~l~~~l 312 (382) T protein:vir:48 233 PLVLDDLEDFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPDNVVGGQGDQQSSLEMSSDLYSKAVSRYLRPFLSELSQKL 312 (382) T ss_pred eeEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 99999999999999999999999999999999999999999999998777777888999999999999999999999999 Q ss_pred hhhhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcccccccCC-CCCCCCCCCCCC Q lcl|Aclame:pro 323 SDHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAPENT-NKKTTGQSNEPV 391 (392) Q Consensus 323 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~~~~-~~~~~gd~~~p~ 391 (392) ++.++++....++.+...+++.+++++++|++|+||+|++|.+.|+.|+|+|..+++ ++++|||.++-- T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~e~r~~l~~~g~~~~~~~~~~~~~~~~~GGd~~~~~ 382 (382) T protein:vir:48 313 SCDVDADIFPAVDPTGSNYISRINSLVKTGTLAQNQGLYILQQAEILPKELPNGENPNSTLKGGEEDGQD 382 (382) T ss_pred cChhhhhhhhhhccchhHHHHHHHHHhhcCccCHHHHHHHHhhCCCCCcchhhhhcCCCCCCCCCCCCCC Confidence 999999988888899999999999999999999999999999999999999999986 778999876666 No 8 >protein:vir:100249 Length: 431 # NCBI annotation: gp78 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355414;genbank:gi:77864704;genbank:GeneID:3725971 Probab=100.00 E-value=5.5e-84 Score=477.03 Aligned_cols=381 Identities=16% Similarity=0.183 Sum_probs=309.3 Q ss_pred chhhhhhcccccccccccc--------ccccc--------Ccchhhhhhhc--cCCCCcccchhhhhcchHHHHHHHHHH Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSV--------QSYFP--------DGNDAQIMESL--LGDNNEWVSARAALRNSDLFSIILQLS 64 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~--------~~~~~--------~~~~~~~~~~~--~~~~~~~~~~~~al~~~~v~~~i~~ia 64 (392) |||||||+++..+...... +.... ...+..+..++ ...++..++.++||++++|++||++|| T Consensus 1 Mgl~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~V~~ci~~Ia 80 (431) T protein:vir:10 1 MGLFDFIRREKQPEAQARPHVEPSFQASTPTTSIPGETFEGLDDPRLKEYIRRGELNGGTGRETRALRNMAVLRCVTLIS 80 (431) T ss_pred CcchhhhhcCcccccccccccccccccccccccccccccccccchHHHHhhccCccCcceechhhhhccHHHHHHHHHHH Confidence 9999999886543221111 11110 01111112222 233567789999999999999999999 Q ss_pred HhhhhCceeeecchh-----------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccce Q lcl|Aclame:pro 65 SDLAIVKINAEKKKN-----------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVN 133 (392) Q Consensus 65 ~~ia~lp~~~~~~~~-----------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~ 133 (392) ++||+||+++++++. ..++.+||++||+++||+.++.+++++||+|+++.|+. |++++|+|++|+.|+ T Consensus 81 ~~iA~lp~~v~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~-g~~~~L~pl~~~~v~ 159 (431) T protein:vir:10 81 GTIGMLPMNLISSDDSKQVLTDDPAHRLLKYKPNDWQTPMEFKSLMQLRALLDGESMARIVWSG-NRPIRLIPMDRGSAK 159 (431) T ss_pred HhhccCceEEEEecCceeeeccchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcC-CceEEEEEEcCceeE Confidence 999999999987642 23457999999999999999999999999999999984 899999999999999 Q ss_pred eeecCCCceEEEEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceE Q lcl|Aclame:pro 134 TYYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGV 213 (392) Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i 213 (392) +..+.++.. +|.++.. .+..+.+++++|||+|+++.++ .+|+||+..++..|..+.+++++..++|+||++|+|+ T Consensus 160 ~~~~~~~~~-~y~~~~~---~g~~~~~~~~dViHir~~~~dg-~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gi 234 (431) T protein:vir:10 160 GRLTSTWQI-VYDYTTP---TGDKIELPAREVFHLRDLSIDG-VSGVSRVKLSGNALELAEQAERAASRTFRTGVMAGGA 234 (431) T ss_pred EEEcCCCeE-EEEEEeC---CceEEEEchhhEEEecCcCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEE Confidence 988766544 4444433 2456789999999999987766 6899999999999999999999999999999999999 Q ss_pred EeeCCCCCchH--HHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccc Q lcl|Aclame:pro 214 LTVKGGGLLSD--KDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGD 291 (392) Q Consensus 214 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~ 291 (392) +++++..++++ +.++.+.+.+.|.+|+|+++||++|++|++++.+++|+||+|++++++++||++|||||++||+.++ T Consensus 235 l~~~~~ls~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~r~~~~~~Ia~~fgVPp~~lg~~~~ 314 (431) T protein:vir:10 235 IEVPKELSDNAYGRMKASVQENHTGSENAGSWMLLEEGATAKQFSNTAASAQQIENRNHQIEEVARMYGVPRPLLMMDDT 314 (431) T ss_pred EecCCCCCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCCC Confidence 99998766664 3456777888889999999999999999999999999999999999999999999999999997644 Q ss_pred c-cch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhccchhhhhhcChHHHHHHHHHHHhCC----ccCHHH Q lcl|Aclame:pro 292 Q-QSS-IQQISGMYASALNRYLRPAISELEYKLSD-------HISVNMRPAIDPLGDNYLSTISTATRWG----ALAENQ 358 (392) Q Consensus 292 ~-~~~-~~~~~~~~~~~l~p~l~~i~~~l~~~l~~-------~~~~d~~~~~~~~~~~~~~~~~~~~~~g----~~t~nE 358 (392) + +++ +++..+|++.||.|+++.|+++|+++|++ +++||.+.+++.|.+++++.+.+++..| ++|+|| T Consensus 315 ~t~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~~g~lT~NE 394 (431) T protein:vir:10 315 SWGSGIEQLAIFFIQYGLSHWFVSWEQAAARAFLPEKMLGQRQFKFNEGALLRGTLNDQAAFFSKALGAGGQSPWMKQNE 394 (431) T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhcCCceEEEechhhhccCHHHHHHHHHHHHhcccccCccCHHH Confidence 3 344 45678999999999999999999999964 3789999999999999999999998765 499999 Q ss_pred HHHHHHhCCCCCccccccc----CCCCCCCCCCCCCCC Q lcl|Aclame:pro 359 ATFVLQEAGYIPKDLPAPE----NTNKKTTGQSNEPVP 392 (392) Q Consensus 359 ~R~~l~~~g~~~~e~~~~~----~~~~~~~gd~~~p~p 392 (392) +|+++ |++|-+.|..| .++..+.|++++|++ T Consensus 395 ~R~~~---gl~p~~~~~gD~~~~p~n~~~~~~~~~~p~ 429 (431) T protein:vir:10 395 VREML---DLPRADDPVADQLRNPMTQKQKGSGDEPPA 429 (431) T ss_pred HHHHh---CCCCCCCccccceecccccccCCCCCCCCC Confidence 99987 55554333333 345556677777755 No 9 >protein:vir:3843 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050149;swissprot:trembl:q9t1f8;genbank:gi:9633041;uniprot:Q9T1F8;genbank:GeneID:1262206 Probab=100.00 E-value=3.4e-83 Score=472.68 Aligned_cols=380 Identities=49% Similarity=0.821 Sum_probs=326.9 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhc-cCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchhhh Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESL-LGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKNQG 81 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~ 81 (392) ||||++.++..... +.. +..++..+ .+..+..|+.++||++|+|++||++||++||++|+++.++.... T Consensus 1 M~~f~~~~~~~~~~---~~~-------~~~~~~~~~~~~~~~~v~~~~al~~~~V~~~v~~ia~~ia~~p~~~~~~~~~~ 70 (397) T protein:vir:38 1 MPLLKLNKSHSQGF---SLN-------DPDWVNFLTGGEAQKYVSADTALKNSDIFSLIMQLSGDLAMVRYTSESDRSQS 70 (397) T ss_pred CcchhhhhcccCcc---cCC-------chhhhhhhcCCcCCceechHHhhccHHHHHHHHHHHHHHhhCcccccccHHHH Confidence 99998765432211 111 11122222 23457789999999999999999999999999999999999999 Q ss_pred hcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCcceeeEEEe Q lcl|Aclame:pro 82 IIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQAP 161 (392) Q Consensus 82 ~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (392) ++.+||++||+++||+.++.+|+++||||++++|+.+|++++|+|++|++|++..+.+++.++|.+++.....+..+.++ T Consensus 71 l~~~PN~~~s~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~l~~~~v~i~~~~~~~~~~y~~~~~~~~~~~~~~~~ 150 (397) T protein:vir:38 71 IISNPSVTANGYSFWQGMFAQLLLDGNCYAYRHKNTNGVDLSWEYLRPSQVQPMLLQDGSGLIYNINFDEPAIGYMENVP 150 (397) T ss_pred HHhcCCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEeccccccceeEec Confidence 99999999999999999999999999999999999999999999999999999999999888888888877778888999 Q ss_pred cceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHH-HHHHHHHhccccC Q lcl|Aclame:pro 162 QSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDK-ASRSRSFMKRSRS 240 (392) Q Consensus 162 ~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 240 (392) +++|||++++++++..+|+||+..+...+....+++++..++|+||++|++++++++....+++++ ++..+...+..|+ T Consensus 151 ~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~~~e~~~~~~~~~~~~~~~~n~ 230 (397) T protein:vir:38 151 AADVIHIRLLSKNGGKTGISPLSALINEQQIKDASNELTLKALKQSVTASAVLTIQKGGLLDAETRIARSKEISKQIHNS 230 (397) T ss_pred CccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHHHHHHHHHHHHHhccccc Confidence 999999999999998899999999999999999999999999999999999999998776665332 3344555666889 Q ss_pred CceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 241 GGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISELEY 320 (392) Q Consensus 241 g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p~l~~i~~~l~~ 320 (392) |+++++++|++|++++.++.|+||+|.+++.+++||++|||||++||+.++++++.++...||..+|.|++..|+++|++ T Consensus 231 ~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~afgVp~~~lg~~~~~~~~~e~~~~~~~~~l~P~~~~ie~~ln~ 310 (397) T protein:vir:38 231 DGPVVIDALEDYKPLEVKGNIASLLNQVDWTRDQIAKVYGVPDSYLNGQGDQQSSITQISGQYAKSLNRYVQAIVGELND 310 (397) T ss_pred CCceecCCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999877767777888899999999999999999999 Q ss_pred HhhhhhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcccccccCC-------CCCCCCCCC----- Q lcl|Aclame:pro 321 KLSDHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAPENT-------NKKTTGQSN----- 388 (392) Q Consensus 321 ~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~~~~-------~~~~~gd~~----- 388 (392) +|++.+++++..+++.|.+++++.++.++++|++|+||+|++++..++++.|++..+.. .+..+|+.+ T Consensus 311 ~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~t~nE~R~~lg~~p~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 390 (397) T protein:vir:38 311 KLHANISANIRFAIDAMGDQYASTISSSVKGGTIAGNQARFILQNSGYLAKDLPDPEKEPQQAIQLIQQEGGENDGNNSD 390 (397) T ss_pred hccChhcccccccccCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCccccccccccccccccccccCCCCCCCCC Confidence 99999999999999999999999999999999999999999998888877776655432 122222211 Q ss_pred CCC--C Q lcl|Aclame:pro 389 EPV--P 392 (392) Q Consensus 389 ~p~--p 392 (392) ++. | T Consensus 391 e~~~~~ 396 (397) T protein:vir:38 391 ERGSDP 396 (397) T ss_pred CCCCCC Confidence 111 1 No 10 >protein:vir:79984 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430000;genbank:gi:156604055;genbank:GeneID:5525444 Probab=100.00 E-value=1.2e-82 Score=469.65 Aligned_cols=378 Identities=19% Similarity=0.246 Sum_probs=305.7 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhh---hccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecc Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIME---SLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKK 77 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~ 77 (392) -.||+|....++.. . .+....+.... .+.+.++..++.+.||++++|++||++||++||+||++++++ T Consensus 24 ~~~~lf~~~e~R~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~~cv~~Ia~~iA~lp~~~~~~ 94 (441) T protein:vir:79 24 VVVGIFYKNEKRDL-------Q--YNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVN 94 (441) T ss_pred hccccccccccccc-------c--CCCcchHHHHHHhcccCcccccccchhhhhccHHHHHHHHHHHHhhccCceeeecC Confidence 33444432222111 0 11111112222 233445567899999999999999999999999999999874 Q ss_pred hh--------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEe Q lcl|Aclame:pro 78 KN--------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITF 149 (392) Q Consensus 78 ~~--------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~ 149 (392) .. ..++.+||++||+++||+.++.+++++||||++++|+.+|+|++|+|++|+.|++..+.++...++++.. T Consensus 95 ~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~g~~~~~~~~~ 174 (441) T protein:vir:79 95 GQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRI 174 (441) T ss_pred ccccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEEEEEEe Confidence 32 2456899999999999999999999999999999999999999999999999999998777766666666 Q ss_pred cCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH---HH Q lcl|Aclame:pro 150 DDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD---KD 226 (392) Q Consensus 150 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~---~~ 226 (392) +....+..+.+++++|||+|+++.++ .+|+||+..++.+|..+.+++++..++|+||++|+||+++++...+++ +. T Consensus 175 ~~~~~~~~~~~~~~dvih~k~~~~dg-~~G~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~e~~e~~ 253 (441) T protein:vir:79 175 DSNGNNIERNVKFEDMLDIKFYSLDG-INGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRA 253 (441) T ss_pred ccCCceeEEEEccccEEEeccCCCCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCCCCCCHHHHHHH Confidence 65556677889999999999887666 689999999999999999999999999999999999999998765433 33 Q ss_pred HHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHHHH Q lcl|Aclame:pro 227 KASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASA 306 (392) Q Consensus 227 ~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~ 306 (392) ++.+.+.+.|..|+|+++||++|++|++++.+++|+||+|++++++++||++|||||++||....++ +.++...+|..+ T Consensus 254 r~~~~~~~~G~~nag~~~vl~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~-s~~q~~~~~~~t 332 (441) T protein:vir:79 254 REEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANM-SITDANLDYLST 332 (441) T ss_pred HHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCCCc-cHHHHHHHHHHH Confidence 4567788889999999999999999999999999999999999999999999999999999754444 344555566789 Q ss_pred HHHHHHHHHHHHHHHhhh-----hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcc-ccccc--- Q lcl|Aclame:pro 307 LNRYLRPAISELEYKLSD-----HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKD-LPAPE--- 377 (392) Q Consensus 307 l~p~l~~i~~~l~~~l~~-----~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e-~~~~~--- 377 (392) |.|++.+|+++|+++|.+ +++||.+.+++.|.+++++.+..++++|++|+||+|++++..+++..+ ....- T Consensus 333 l~P~~~~ie~eln~kl~~~~~~~~~~fd~~~llr~D~~~~~~~~~~~i~~G~~T~NE~R~~~gl~Pi~ggd~~~~~~~~n 412 (441) T protein:vir:79 333 LKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLN 412 (441) T ss_pred HHHHHHHHHHHHhhhccccccCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeeccc Confidence 999999999999999964 578999999999999999999999999999999999988555444222 11100 Q ss_pred -----------------CCCCCCCCCCCC Q lcl|Aclame:pro 378 -----------------NTNKKTTGQSNE 389 (392) Q Consensus 378 -----------------~~~~~~~gd~~~ 389 (392) .-.+..||+.|| T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~kgGe~~e 441 (441) T protein:vir:79 413 HVNIELVDEYQMNKSRATDKKLKGGEENE 441 (441) T ss_pred ccccccccccccccccccccccCCCCCCC Confidence 112346788888 No 11 >protein:vir:9408 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803386;genbank:gi:29028698;genbank:GeneID:1258164 Probab=100.00 E-value=1.2e-82 Score=469.65 Aligned_cols=378 Identities=19% Similarity=0.246 Sum_probs=305.7 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhh---hccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecc Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIME---SLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKK 77 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~ 77 (392) -.||+|....++.. . .+....+.... .+.+.++..++.+.||++++|++||++||++||+||++++++ T Consensus 24 ~~~~lf~~~e~R~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~~cv~~Ia~~iA~lp~~~~~~ 94 (441) T protein:vir:94 24 VVVGIFYKNEKRDL-------Q--YNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVN 94 (441) T ss_pred hccccccccccccc-------c--CCCcchHHHHHHhcccCcccccccchhhhhccHHHHHHHHHHHHhhccCceeeecC Confidence 33444432222111 0 11111112222 233445567899999999999999999999999999999874 Q ss_pred hh--------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEe Q lcl|Aclame:pro 78 KN--------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITF 149 (392) Q Consensus 78 ~~--------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~ 149 (392) .. ..++.+||++||+++||+.++.+++++||||++++|+.+|+|++|+|++|+.|++..+.++...++++.. T Consensus 95 ~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~g~~~~~~~~~ 174 (441) T protein:vir:94 95 GQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRI 174 (441) T ss_pred ccccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEEEEEEe Confidence 32 2456899999999999999999999999999999999999999999999999999998777766666666 Q ss_pred cCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH---HH Q lcl|Aclame:pro 150 DDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD---KD 226 (392) Q Consensus 150 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~---~~ 226 (392) +....+..+.+++++|||+|+++.++ .+|+||+..++.+|..+.+++++..++|+||++|+||+++++...+++ +. T Consensus 175 ~~~~~~~~~~~~~~dvih~k~~~~dg-~~G~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~e~~e~~ 253 (441) T protein:vir:94 175 DSNGNNIERNVKFEDMLDIKFYSLDG-INGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRA 253 (441) T ss_pred ccCCceeEEEEccccEEEeccCCCCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCCCCCCHHHHHHH Confidence 65556677889999999999887666 689999999999999999999999999999999999999998765433 33 Q ss_pred HHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHHHH Q lcl|Aclame:pro 227 KASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASA 306 (392) Q Consensus 227 ~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~ 306 (392) ++.+.+.+.|..|+|+++||++|++|++++.+++|+||+|++++++++||++|||||++||....++ +.++...+|..+ T Consensus 254 r~~~~~~~~G~~nag~~~vl~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~-s~~q~~~~~~~t 332 (441) T protein:vir:94 254 REEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANM-SITDANLDYLST 332 (441) T ss_pred HHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCCCc-cHHHHHHHHHHH Confidence 4567788889999999999999999999999999999999999999999999999999999754444 344555566789 Q ss_pred HHHHHHHHHHHHHHHhhh-----hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcc-ccccc--- Q lcl|Aclame:pro 307 LNRYLRPAISELEYKLSD-----HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKD-LPAPE--- 377 (392) Q Consensus 307 l~p~l~~i~~~l~~~l~~-----~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e-~~~~~--- 377 (392) |.|++.+|+++|+++|.+ +++||.+.+++.|.+++++.+..++++|++|+||+|++++..+++..+ ....- T Consensus 333 l~P~~~~ie~eln~kl~~~~~~~~~~fd~~~llr~D~~~~~~~~~~~i~~G~~T~NE~R~~~gl~Pi~ggd~~~~~~~~n 412 (441) T protein:vir:94 333 LKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLN 412 (441) T ss_pred HHHHHHHHHHHHhhhccccccCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeeccc Confidence 999999999999999964 578999999999999999999999999999999999988555444222 11100 Q ss_pred -----------------CCCCCCCCCCCC Q lcl|Aclame:pro 378 -----------------NTNKKTTGQSNE 389 (392) Q Consensus 378 -----------------~~~~~~~gd~~~ 389 (392) .-.+..||+.|| T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~kgGe~~e 441 (441) T protein:vir:94 413 HVNIELVDEYQMNKSRATDKKLKGGEENE 441 (441) T ss_pred ccccccccccccccccccccccCCCCCCC Confidence 112346788888 No 12 >protein:vir:81095 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429872;genbank:gi:156603925;genbank:GeneID:5525315 Probab=100.00 E-value=1.7e-82 Score=468.83 Aligned_cols=379 Identities=20% Similarity=0.239 Sum_probs=310.6 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) ||||+++.++..........++ -..+..+.+..+..++..+||++++||+||++||++||++|++++++.. T Consensus 1 Mg~f~~~~~r~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~~~v~~cv~~Ia~~iA~~p~~~~~~~~~~~ 74 (416) T protein:vir:81 1 MGIFYKNEKRDLQYNEDDLQMM------VQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNGQINY 74 (416) T ss_pred CCcccccccccccCCCcchhHH------HHHhccccccCccccchhhhhcchHHHHHHHHHHHhhccCceEEecCccccc Confidence 9998766543222111111111 0111222344567889999999999999999999999999999987432 Q ss_pred -----hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCcc Q lcl|Aclame:pro 80 -----QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKI 154 (392) Q Consensus 80 -----~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~ 154 (392) ..++.+||++||+++||+.++.+++++||||++++|+.+|+|++|+|++|+.|++..+.++...+++..++.... T Consensus 75 ~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~~~~~ 154 (416) T protein:vir:81 75 SDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRIDSNGN 154 (416) T ss_pred cchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEEEEEEecCCCc Confidence 235679999999999999999999999999999999999999999999999999999877766666666666566 Q ss_pred eeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH---HHHHHHH Q lcl|Aclame:pro 155 EPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD---KDKASRS 231 (392) Q Consensus 155 ~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~---~~~~~~~ 231 (392) +..+.+++++|||+|+++.++ .+|+||+..+++.+..+.++++++.++|+||++|++++++++...+++ +.++.+. T Consensus 155 ~~~~~~~~~evihir~~~~d~-~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~~~ 233 (416) T protein:vir:81 155 NIERNVKFEDMLDIKFYSLDG-INGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFH 233 (416) T ss_pred eeEEEEccccEEEeccCCCCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHHHHHHH Confidence 667889999999999887665 689999999999999999999999999999999999999998765433 3345677 Q ss_pred HHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 232 RSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYL 311 (392) Q Consensus 232 ~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p~l 311 (392) +.+.|..|+|+++||++|++|++++.+++|+||+|.+++++++||++|||||.++|+...+ ++.++...+|..||.|++ T Consensus 234 ~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~-~~~~~~~~~~~~~l~P~~ 312 (416) T protein:vir:81 234 KSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETAN-MSITDANLDYLSTLKPYI 312 (416) T ss_pred HHhcCccccCceeecCCCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCC-ccHHHHHHHHHHHHHHHH Confidence 8888889999999999999999999999999999999999999999999999999975443 344555666778999999 Q ss_pred HHHHHHHHHHhhh-----hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcc-ccc--------cc Q lcl|Aclame:pro 312 RPAISELEYKLSD-----HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKD-LPA--------PE 377 (392) Q Consensus 312 ~~i~~~l~~~l~~-----~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e-~~~--------~~ 377 (392) .+|+++|+++|.+ +++||.+.+++.|.+++++.+..++++|++|+||+|++++..+++..+ ... .+ T Consensus 313 ~~ie~~ln~~l~~~~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~~gd~~~~~~~~n~~~~~ 392 (416) T protein:vir:81 313 TCVCAELNFKFNDEYVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIE 392 (416) T ss_pred HHHHHHHhhhccccccCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecccccccc Confidence 9999999999964 578999999999999999999999999999999999998555444222 100 01 Q ss_pred ------------CCCCCCCCCCCC Q lcl|Aclame:pro 378 ------------NTNKKTTGQSNE 389 (392) Q Consensus 378 ------------~~~~~~~gd~~~ 389 (392) +..+..||+.|| T Consensus 393 ~~~~~~~~~~~~~~~~~kgGe~n~ 416 (416) T protein:vir:81 393 LVDEYQMNKSRATDKKLKGGEENE 416 (416) T ss_pred cccccCcccccccccccCCCCCCC Confidence 123467889998 No 13 >protein:vir:4598 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058443;genbank:gi:9635169;genbank:GeneID:1262702 Probab=100.00 E-value=1.7e-82 Score=468.83 Aligned_cols=379 Identities=20% Similarity=0.239 Sum_probs=310.6 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) ||||+++.++..........++ -..+..+.+..+..++..+||++++||+||++||++||++|++++++.. T Consensus 1 Mg~f~~~~~r~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~~~v~~cv~~Ia~~iA~~p~~~~~~~~~~~ 74 (416) T protein:vir:45 1 MGIFYKNEKRDLQYNEDDLQMM------VQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNGQINY 74 (416) T ss_pred CCcccccccccccCCCcchhHH------HHHhccccccCccccchhhhhcchHHHHHHHHHHHhhccCceEEecCccccc Confidence 9998766543222111111111 0111222344567889999999999999999999999999999987432 Q ss_pred -----hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCcc Q lcl|Aclame:pro 80 -----QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKI 154 (392) Q Consensus 80 -----~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~ 154 (392) ..++.+||++||+++||+.++.+++++||||++++|+.+|+|++|+|++|+.|++..+.++...+++..++.... T Consensus 75 ~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~~~~~ 154 (416) T protein:vir:45 75 SDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRIDSNGN 154 (416) T ss_pred cchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEEEEEEecCCCc Confidence 235679999999999999999999999999999999999999999999999999999877766666666666566 Q ss_pred eeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH---HHHHHHH Q lcl|Aclame:pro 155 EPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD---KDKASRS 231 (392) Q Consensus 155 ~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~---~~~~~~~ 231 (392) +..+.+++++|||+|+++.++ .+|+||+..+++.+..+.++++++.++|+||++|++++++++...+++ +.++.+. T Consensus 155 ~~~~~~~~~evihir~~~~d~-~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~~~ 233 (416) T protein:vir:45 155 NIERNVKFEDMLDIKFYSLDG-INGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFH 233 (416) T ss_pred eeEEEEccccEEEeccCCCCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHHHHHHH Confidence 667889999999999887665 689999999999999999999999999999999999999998765433 3345677 Q ss_pred HHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 232 RSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYL 311 (392) Q Consensus 232 ~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p~l 311 (392) +.+.|..|+|+++||++|++|++++.+++|+||+|.+++++++||++|||||.++|+...+ ++.++...+|..||.|++ T Consensus 234 ~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~-~~~~~~~~~~~~~l~P~~ 312 (416) T protein:vir:45 234 KSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETAN-MSITDANLDYLSTLKPYI 312 (416) T ss_pred HHhcCccccCceeecCCCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCC-ccHHHHHHHHHHHHHHHH Confidence 8888889999999999999999999999999999999999999999999999999975443 344555666778999999 Q ss_pred HHHHHHHHHHhhh-----hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcc-ccc--------cc Q lcl|Aclame:pro 312 RPAISELEYKLSD-----HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKD-LPA--------PE 377 (392) Q Consensus 312 ~~i~~~l~~~l~~-----~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e-~~~--------~~ 377 (392) .+|+++|+++|.+ +++||.+.+++.|.+++++.+..++++|++|+||+|++++..+++..+ ... .+ T Consensus 313 ~~ie~~ln~~l~~~~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~~gd~~~~~~~~n~~~~~ 392 (416) T protein:vir:45 313 TCVCAELNFKFNDEYVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIE 392 (416) T ss_pred HHHHHHHhhhccccccCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecccccccc Confidence 9999999999964 578999999999999999999999999999999999998555444222 100 01 Q ss_pred ------------CCCCCCCCCCCC Q lcl|Aclame:pro 378 ------------NTNKKTTGQSNE 389 (392) Q Consensus 378 ------------~~~~~~~gd~~~ 389 (392) +..+..||+.|| T Consensus 393 ~~~~~~~~~~~~~~~~~kgGe~n~ 416 (416) T protein:vir:45 393 LVDEYQMNKSRATDKKLKGGEENE 416 (416) T ss_pred cccccCcccccccccccCCCCCCC Confidence 123467889998 No 14 >protein:vir:98396 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918929;genbank:gi:119443691;genbank:GeneID:4594558 Probab=100.00 E-value=2.8e-82 Score=467.66 Aligned_cols=381 Identities=19% Similarity=0.243 Sum_probs=306.6 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhh---hhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecc Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIM---ESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKK 77 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~ 77 (392) --|+++++|++...+... .+....+... ..+.+.++..++++.||++|+|++||++||++||+||++++++ T Consensus 21 ~~~~~~~~f~~~e~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~acv~~Ia~~iA~lpl~~~~~ 94 (441) T protein:vir:98 21 KELVVVGIFYKNEKRDLQ------YNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVN 94 (441) T ss_pred hhhhcccccccccccccc------CCCcchHHHHHHhhcccccCccccchhhhhccHHHHHHHHHHHHhhccCceEEecC Confidence 222222333322221100 1111111222 2234445667999999999999999999999999999999875 Q ss_pred h--------hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEe Q lcl|Aclame:pro 78 K--------NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITF 149 (392) Q Consensus 78 ~--------~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~ 149 (392) . ...++.+||++||+++||+.++.+++++||||++++|+.+|+|++|+|++|+.|++..+.++...++++.. T Consensus 95 ~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~ 174 (441) T protein:vir:98 95 GQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKLDARGRLYYFHQRI 174 (441) T ss_pred CcccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCceeEEEECCCCcEEEEEEEe Confidence 3 23457899999999999999999999999999999999999999999999999999998877776666666 Q ss_pred cCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH---HH Q lcl|Aclame:pro 150 DDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD---KD 226 (392) Q Consensus 150 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~---~~ 226 (392) +....+..+.+++++|||+++++.++ .+|+||+..++..+..+.+++++..++|+||++|+|++++++...+++ +. T Consensus 175 ~~~~~~~~~~~~~~dviHir~~~~dg-~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil~~~~~~~~~e~~~~~ 253 (441) T protein:vir:98 175 DSNGNNIERNVKFEDMLDIKFYSLDG-INGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRA 253 (441) T ss_pred ccCcceeeEEEccccEEEeccCCCCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHH Confidence 65556667889999999999987766 689999999999999999999999999999999999999998765433 33 Q ss_pred HHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHHHH Q lcl|Aclame:pro 227 KASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASA 306 (392) Q Consensus 227 ~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~ 306 (392) ++.+.+.+.|..|+|++++|++|++|++++.+++|+||+|.+++++++||++|||||++||+...+++ .++...+|..| T Consensus 254 ~~~~~~~~~G~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~~~~s-~~q~~~~y~~t 332 (441) T protein:vir:98 254 REEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANMS-ITDANLDYLST 332 (441) T ss_pred HHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCCCcc-HHHHHHHHHHH Confidence 45677888899999999999999999999999999999999999999999999999999997554444 44445556679 Q ss_pred HHHHHHHHHHHHHHHhhh-----hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcc-cccc---- Q lcl|Aclame:pro 307 LNRYLRPAISELEYKLSD-----HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKD-LPAP---- 376 (392) Q Consensus 307 l~p~l~~i~~~l~~~l~~-----~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e-~~~~---- 376 (392) |.|++.+|+++|+++|.+ +++||.+.+++.|.+++++.+..++++|++|+||+|++++..+++..+ .... T Consensus 333 l~P~~~~ie~~ln~~L~~~~~~~~~~fd~~~llr~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~pi~gGd~~~~~~~~n 412 (441) T protein:vir:98 333 LKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLN 412 (441) T ss_pred HHHHHHHHHHHHHhhccccccCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeeccc Confidence 999999999999999964 578999999999999999999999999999999999988555444222 1100 Q ss_pred ----c------------CCCCCCCCCCCC Q lcl|Aclame:pro 377 ----E------------NTNKKTTGQSNE 389 (392) Q Consensus 377 ----~------------~~~~~~~gd~~~ 389 (392) + +-....||+.|| T Consensus 413 ~~~~~~~~~~q~~~~~~~~~~~kgGe~ne 441 (441) T protein:vir:98 413 HVNIELVDEYQMNKSRATDKKLKGGEENE 441 (441) T ss_pred ccccccccccccccccccccccCCCCCCC Confidence 0 112457888888 No 15 >protein:vir:81072 Length: 432 # NCBI annotation: p07 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285677;genbank:gi:148727185;genbank:GeneID:5247117 Probab=100.00 E-value=9.7e-82 Score=464.72 Aligned_cols=384 Identities=17% Similarity=0.229 Sum_probs=307.9 Q ss_pred Ccchhhhhhcccccccc---cccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecc Q lcl|Aclame:pro 1 MILPILNFINQTNDPPE---AGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKK 77 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~ 77 (392) -.||||++.+....+++ .....+..+.......+..+.+.++..|++++||++|+|++||++||++||+||++++++ T Consensus 5 ~~mg~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~V~~~i~~Ia~~ia~lp~~~y~~ 84 (432) T protein:vir:81 5 KKLGLFGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAIAAMPLTMYMR 84 (432) T ss_pred hhcchhhhhhhhcccccccccccccccccCccchhhhcccccccCcccchHhhhccHHHHHHHHHHHHhhhhCceeeEEe Confidence 57999987554333322 222222222222222333445567888999999999999999999999999999999864 Q ss_pred hh------------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEE Q lcl|Aclame:pro 78 KN------------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYY 145 (392) Q Consensus 78 ~~------------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~ 145 (392) .. +.++.+||++||+++||+.++.+++++||||+++.++ +|++++|+|++|+.|++..+.++.. +| T Consensus 85 ~~~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnayv~i~~~-~g~~~~L~~l~~~~v~v~~~~~g~~-~y 162 (432) T protein:vir:81 85 TPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT-DGRIESLQYLANDRLTITTDPKGNT-AY 162 (432) T ss_pred cCCcceecccchHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCCceEEEECCCCcE-EE Confidence 32 2346799999999999999999999999999999987 5999999999999999999876544 44 Q ss_pred EEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHH Q lcl|Aclame:pro 146 NITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDK 225 (392) Q Consensus 146 ~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~ 225 (392) .++..+ +..+.+++++|+|+|+++.++ .+|+||+..++..|..+.+++++..++|+||++|++++++++..+ ++ T Consensus 163 ~~~~~~---g~~~~~~~~~iih~r~~~~dg-~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~--~e 236 (432) T protein:vir:81 163 RYRRTD---GQMIDIPKQQIWKIMGYSLDG-ENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRFLT--DD 236 (432) T ss_pred EEEecC---ceEEEEccccEEEecCCCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCCCC--HH Confidence 444332 456789999999999987776 689999999999999999999999999999999999999987654 34 Q ss_pred HHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccccc----ch-HHHHH Q lcl|Aclame:pro 226 DKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ----SS-IQQIS 300 (392) Q Consensus 226 ~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~----~~-~~~~~ 300 (392) +++++.+.+.+..|+|++++|++|++|++++++++|+||+|++++++++||++|||||++||..+.++ ++ +++.. T Consensus 237 ~~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~sn~eq~~~ 316 (432) T protein:vir:81 237 QYDSFAKKVSGSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQL 316 (432) T ss_pred HHHHHHHHHhhhhcCCCceecCCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCccccccchHHHHHH Confidence 45667778888999999999999999999999999999999999999999999999999999754432 33 35678 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccc Q lcl|Aclame:pro 301 GMYASALNRYLRPAISELEYKLSD-------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDL 373 (392) Q Consensus 301 ~~~~~~l~p~l~~i~~~l~~~l~~-------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~ 373 (392) .|++.||.|++..|+++|+++|++ +++||...+++.|.+++++.+..++++|++|+||+|++++..+++.++. T Consensus 317 ~f~~~tl~P~~~~ie~~l~~kLl~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~t~NE~R~~~glpp~~g~~~ 396 (432) T protein:vir:81 317 GFLTMTLSPWLRRIEQSIALNLLSPAERRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGNAA 396 (432) T ss_pred HHHHHHHHHHHHHHHHHHHhhccCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCcc Confidence 999999999999999999999964 4789999999999999999999999999999999999986555543332 Q ss_pred ccccCCC--CCC-CCCCCCCCC Q lcl|Aclame:pro 374 PAPENTN--KKT-TGQSNEPVP 392 (392) Q Consensus 374 ~~~~~~~--~~~-~gd~~~p~p 392 (392) ...-+.+ |+. .|+...|.| T Consensus 397 ~~~~~~~~~pl~~~~~~~~~~~ 418 (432) T protein:vir:81 397 VLTVQSAMVPLDSIGLQASPEP 418 (432) T ss_pred eEeecCcccchhhhccCCCCCC Confidence 2211222 222 123333333 No 16 >protein:vir:1380 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612832;genbank:gi:20065966;genbank:GeneID:935782 Probab=100.00 E-value=1.3e-81 Score=464.09 Aligned_cols=385 Identities=17% Similarity=0.141 Sum_probs=308.8 Q ss_pred chhhhh-hccccccccccccc--ccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh Q lcl|Aclame:pro 3 LPILNF-INQTNDPPEAGSVQ--SYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN 79 (392) Q Consensus 3 Mg~~n~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~ 79 (392) ||||++ |.++...++..... ..........++..+....+..++++.||++++|++||++||++||++|++++++.. T Consensus 1 MG~f~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~al~~~~v~~ci~~ia~~iA~lp~~~~~~~~ 80 (422) T protein:vir:13 1 MGFLRGLFNKKNNNDEKRSNYDEDIGIDISDSNFWEKFGIKLNFSVRGKRALKENTVYVCTKIRAESIGKLSLKIYKDKE 80 (422) T ss_pred CchhhhhhhccCCccchhhhhhhccccccCcchhhhhccccCCcccchhhhhccHHHHHHHHHHHHhhhhCceEEEecCc Confidence 999985 44444333222211 111223344556666556677899999999999999999999999999999987543 Q ss_pred --------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCc-----eEEEE Q lcl|Aclame:pro 80 --------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYEN-----GMYYN 146 (392) Q Consensus 80 --------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~-----~~~~~ 146 (392) +.++.+||++||+++||+.++.+++++||||++++|+.+|++++|+|++|++|++..+.++. .+++. T Consensus 81 ~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~~~~~~~~~~~~~~~~~y~ 160 (422) T protein:vir:13 81 EYKEHELYYLLRYKPNPLMSSINFWKCLETQRTLKGNAYAYIERDRKGKIIGLYPINSDNVTKIIDDDNFLSSLSKVWYV 160 (422) T ss_pred ccccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEcCCcceeccceEEEE Confidence 23567999999999999999999999999999999999999999999999999999987763 23333 Q ss_pred EEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH-- Q lcl|Aclame:pro 147 ITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD-- 224 (392) Q Consensus 147 ~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~-- 224 (392) ++. ..+..+.+++++|||++++...+..+|+||+..+...+..+.+++++..++|+||++|+|++++++..++++ T Consensus 161 ~~~---~~g~~~~~~~~eiih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~ 237 (422) T protein:vir:13 161 VTD---KNGKEHKLLPDEMLHFIGDITLDGLIGIKPLDYLRCTIENGRATQEFINKFFKNGLSIKGIVQYVGDLDEKAKK 237 (422) T ss_pred EEe---CCCeEEEEcccceEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHHHH Confidence 332 235667899999999998766667899999999999999999999999999999999999999998766553 Q ss_pred HHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc-c-chHHHHHHH Q lcl|Aclame:pro 225 KDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-Q-SSIQQISGM 302 (392) Q Consensus 225 ~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-~-~~~~~~~~~ 302 (392) +.++.+.+.+.+.+|+|+++|+++|++|++++.++.|+||+|.+++++++||++|||||++||+.+++ + +..++...| T Consensus 238 ~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVpp~~lg~~~~~~~sn~e~~~~~f 317 (422) T protein:vir:13 238 IFKKEFESMSNGLENAHSISLLPFGYQFQPISLSMADAQFLENSKLTKRELAATFGMKSYHLNDLERATFNNLTEQQKDF 317 (422) T ss_pred HHHHHHHHHhcCccccCCceecCCCceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHH Confidence 44566777788889999999999999999999999999999999999999999999999999975443 2 345678899 Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcc-c Q lcl|Aclame:pro 303 YASALNRYLRPAISELEYKLSD--------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKD-L 373 (392) Q Consensus 303 ~~~~l~p~l~~i~~~l~~~l~~--------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e-~ 373 (392) ++++|.|++++|+++|+++|++ +++||...+++.|.+++++.+.+++++|++|+||+|++++..+++..| + T Consensus 318 ~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~ 397 (422) T protein:vir:13 318 YVTTLQSSLTVYEQEIQDKLFSQYETLQDVKAEFNVDTILRSDIKTRYEAYRIGIQGGFIEANEARRRENLPPVEGGDRL 397 (422) T ss_pred HHHHHHHHHHHHHHHHHHhhCChhhhcCCceEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCee Confidence 9999999999999999999964 367889999999999999999999999999999999988544443222 1 Q ss_pred ccccCCCCCC--------CCCCCCC Q lcl|Aclame:pro 374 PAPENTNKKT--------TGQSNEP 390 (392) Q Consensus 374 ~~~~~~~~~~--------~gd~~~p 390 (392) ...-|+.|+. ||+.+-- T Consensus 398 ~~~~n~~~l~~~~~~~~~~g~~~g~ 422 (422) T protein:vir:13 398 LVNGNMIPIEMAGEQYKKGGEKGGK 422 (422) T ss_pred eeccCccchhhcccccccCCCcCCC Confidence 1111222221 2211111 No 17 >protein:vir:97060 Length: 432 # NCBI annotation: putative head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453563;genbank:gi:84662598;genbank:GeneID:5142475 Probab=100.00 E-value=1.3e-81 Score=464.09 Aligned_cols=384 Identities=17% Similarity=0.211 Sum_probs=307.7 Q ss_pred Ccchhhhhhcccccccccccc---cccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecc Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSV---QSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKK 77 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~ 77 (392) -.||||++++....+++..+. .+..+.......+....+.++..|++++||++++|++||++||++||+||+++|++ T Consensus 5 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~a~~~~aV~~~v~~Ia~~ia~lp~~~y~~ 84 (432) T protein:vir:97 5 KKLGLLGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAVAAMPLMMYMR 84 (432) T ss_pred ccCchhhhhHhhcCCccccccccccccccCchhhhhhcccccccCcccchHhhhcchHHHHHHHHHHHhhccCceEEEEe Confidence 469999987666554433222 12222111122223334557888999999999999999999999999999999875 Q ss_pred hh------------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEE Q lcl|Aclame:pro 78 KN------------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYY 145 (392) Q Consensus 78 ~~------------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~ 145 (392) .. +.++.+||++||+++||+.++.+++++||||++++|+ +|++.+|+|++|+.|++..+.++.. +| T Consensus 85 ~~~g~~~~~~~pl~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~-~g~~~~L~~l~p~~v~v~~~~~g~~-~y 162 (432) T protein:vir:97 85 TPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT-DGRIESLQYLANDRLTITTDTKGNT-AY 162 (432) T ss_pred cCCCcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCcceEEEEcCCCcE-EE Confidence 32 2356899999999999999999999999999999997 5999999999999999998876654 44 Q ss_pred EEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHH Q lcl|Aclame:pro 146 NITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDK 225 (392) Q Consensus 146 ~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~ 225 (392) .++.. .+..+.+++++|||+|+++.++ .+|+||+..++..+..+.+++++..++|+||++|++++++++..++ + T Consensus 163 ~~~~~---~g~~~~~~~~~iih~r~~~~dg-~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil~~~~~l~~--e 236 (432) T protein:vir:97 163 RYRRT---DGQMIDIPRQQIWKIMGYSLDG-ENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRFLTD--D 236 (432) T ss_pred EEEec---CceEEEEccccEEEecCcCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeEecCCCCCH--H Confidence 44433 2456789999999999987766 6899999999999999999999999999999999999999886543 3 Q ss_pred HHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccccc----ch-HHHHH Q lcl|Aclame:pro 226 DKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ----SS-IQQIS 300 (392) Q Consensus 226 ~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~----~~-~~~~~ 300 (392) +++++.+.+.+..|+|++++|++|++|++++.+++|+||+|++++++++||++|||||++||..+.++ ++ +++.. T Consensus 237 ~~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~~s~~e~~~~ 316 (432) T protein:vir:97 237 QYDSFSKKVSGSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQL 316 (432) T ss_pred HHHHHHHHHhhhhcCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCcccccchhHHHHHH Confidence 45567788888899999999999999999999999999999999999999999999999999754322 33 45678 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccc Q lcl|Aclame:pro 301 GMYASALNRYLRPAISELEYKLSD-------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDL 373 (392) Q Consensus 301 ~~~~~~l~p~l~~i~~~l~~~l~~-------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~ 373 (392) +|+++||.|+++.|+++|+++|++ +++||...+++.|.+++++.+.+++++|++|+||+|++++..+.+.++. T Consensus 317 ~f~~~tl~P~~~~ie~~ln~kLl~~~e~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~glpp~~g~~~ 396 (432) T protein:vir:97 317 GFLTMTLSPWLRRIEQSIALNLLTPAERRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGNAA 396 (432) T ss_pred HHHHHHHHHHHHHHHHHHhhhccCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCcc Confidence 899999999999999999999964 4789999999999999999999999999999999999885544443332 Q ss_pred ccc--cCCCCCCC-CCCCCCCC Q lcl|Aclame:pro 374 PAP--ENTNKKTT-GQSNEPVP 392 (392) Q Consensus 374 ~~~--~~~~~~~~-gd~~~p~p 392 (392) ... .++.|+.. |....|-| T Consensus 397 ~~~~~~~~~pl~~~~~~~~~~~ 418 (432) T protein:vir:97 397 VLTVQSAMVPLDSIGLQASPEP 418 (432) T ss_pred eEeecccccchhhhcccCCCCC Confidence 211 12222221 22222333 No 18 >protein:vir:107605 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338186;genbank:gi:77020175;genbank:GeneID:3703736 Probab=100.00 E-value=1.5e-81 Score=463.66 Aligned_cols=388 Identities=16% Similarity=0.120 Sum_probs=306.6 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhcc-CCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh-- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLL-GDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN-- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~-- 79 (392) ||||+++++.....++..............+..++. +.++..++.++|+++++|++||++||++||+||++++++.. T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~ 80 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGISPSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDEYG 80 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHHHHHhCCCcCccccchhhhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 999997755332222222222222233334444432 33567899999999999999999999999999999986532 Q ss_pred ----------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceE---EEE Q lcl|Aclame:pro 80 ----------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGM---YYN 146 (392) Q Consensus 80 ----------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~---~~~ 146 (392) ..++.+||++||+++||+.++.+++++||+|++++|+.+|++++|+|++|+.|++..+..+... ..+ T Consensus 81 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~~~ 160 (432) T protein:vir:10 81 IQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKMW 160 (432) T ss_pred eeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceEE Confidence 2245699999999999999999999999999999999999999999999999999887643221 112 Q ss_pred EEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH-- Q lcl|Aclame:pro 147 ITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD-- 224 (392) Q Consensus 147 ~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~-- 224 (392) +.+. ..+..+.+++++|||++++.+.+..+|+||+..+...+..+.+++++..++|+||++|++++++++...+++ T Consensus 161 y~~~--~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~e~~~ 238 (432) T protein:vir:10 161 YVVN--TGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNEDAKK 238 (432) T ss_pred EEEe--cCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHHH Confidence 2222 235567899999999998766667889999999999999999999999999999999999999988766554 Q ss_pred HHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc--cchHHHHHHH Q lcl|Aclame:pro 225 KDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ--QSSIQQISGM 302 (392) Q Consensus 225 ~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~--~~~~~~~~~~ 302 (392) +.++.+.+.+.+..|+|+++++++|++|++++.++.|+||+|.+++++++||++|||||++||..+.+ ++.+++..+| T Consensus 239 ~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~~~~~ 318 (432) T protein:vir:10 239 VFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQQF 318 (432) T ss_pred HHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHH Confidence 33455667788889999999999999999999999999999999999999999999999999975443 2445678899 Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcccc Q lcl|Aclame:pro 303 YASALNRYLRPAISELEYKLSD--------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLP 374 (392) Q Consensus 303 ~~~~l~p~l~~i~~~l~~~l~~--------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~ 374 (392) ++++|.|++..|+++|+++|++ +++||.+.+++.|.+++++.+..++++|++|+||+|++++..+++..|.. T Consensus 319 ~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~ggD~~ 398 (432) T protein:vir:10 319 YTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDRL 398 (432) T ss_pred HHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeE Confidence 9999999999999999999963 47889999999999999999999999999999999998855444322211 Q ss_pred c-ccCC--------CCCCCCCCCCCCC Q lcl|Aclame:pro 375 A-PENT--------NKKTTGQSNEPVP 392 (392) Q Consensus 375 ~-~~~~--------~~~~~gd~~~p~p 392 (392) . .-|. ...++|+.+.-.. T Consensus 399 ~~~~n~~~~~~~~~~~~k~~~~~~~~~ 425 (432) T protein:vir:10 399 LVNGNMLPIDMAGQAYLKGGDTNGEVS 425 (432) T ss_pred eecccccchhhccccccCCCCCCCCCC Confidence 1 1111 1123444333333 No 19 >protein:vir:102855 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338135;genbank:gi:77020228;genbank:GeneID:3703764 Probab=100.00 E-value=1.5e-81 Score=463.66 Aligned_cols=388 Identities=16% Similarity=0.120 Sum_probs=306.6 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhcc-CCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh-- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLL-GDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN-- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~-- 79 (392) ||||+++++.....++..............+..++. +.++..++.++|+++++|++||++||++||+||++++++.. T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~ 80 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGISPSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDEYG 80 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHHHHHhCCCcCccccchhhhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 999997755332222222222222233334444432 33567899999999999999999999999999999986532 Q ss_pred ----------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceE---EEE Q lcl|Aclame:pro 80 ----------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGM---YYN 146 (392) Q Consensus 80 ----------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~---~~~ 146 (392) ..++.+||++||+++||+.++.+++++||+|++++|+.+|++++|+|++|+.|++..+..+... ..+ T Consensus 81 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~~~ 160 (432) T protein:vir:10 81 IQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKMW 160 (432) T ss_pred eeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceEE Confidence 2245699999999999999999999999999999999999999999999999999887643221 112 Q ss_pred EEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH-- Q lcl|Aclame:pro 147 ITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD-- 224 (392) Q Consensus 147 ~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~-- 224 (392) +.+. ..+..+.+++++|||++++.+.+..+|+||+..+...+..+.+++++..++|+||++|++++++++...+++ T Consensus 161 y~~~--~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~e~~~ 238 (432) T protein:vir:10 161 YVVN--TGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNEDAKK 238 (432) T ss_pred EEEe--cCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHHH Confidence 2222 235567899999999998766667889999999999999999999999999999999999999988766554 Q ss_pred HHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc--cchHHHHHHH Q lcl|Aclame:pro 225 KDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ--QSSIQQISGM 302 (392) Q Consensus 225 ~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~--~~~~~~~~~~ 302 (392) +.++.+.+.+.+..|+|+++++++|++|++++.++.|+||+|.+++++++||++|||||++||..+.+ ++.+++..+| T Consensus 239 ~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~~~~~ 318 (432) T protein:vir:10 239 VFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQQF 318 (432) T ss_pred HHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHH Confidence 33455667788889999999999999999999999999999999999999999999999999975443 2445678899 Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcccc Q lcl|Aclame:pro 303 YASALNRYLRPAISELEYKLSD--------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLP 374 (392) Q Consensus 303 ~~~~l~p~l~~i~~~l~~~l~~--------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~ 374 (392) ++++|.|++..|+++|+++|++ +++||.+.+++.|.+++++.+..++++|++|+||+|++++..+++..|.. T Consensus 319 ~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~ggD~~ 398 (432) T protein:vir:10 319 YTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDRL 398 (432) T ss_pred HHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeE Confidence 9999999999999999999963 47889999999999999999999999999999999998855444322211 Q ss_pred c-ccCC--------CCCCCCCCCCCCC Q lcl|Aclame:pro 375 A-PENT--------NKKTTGQSNEPVP 392 (392) Q Consensus 375 ~-~~~~--------~~~~~gd~~~p~p 392 (392) . .-|. ...++|+.+.-.. T Consensus 399 ~~~~n~~~~~~~~~~~~k~~~~~~~~~ 425 (432) T protein:vir:10 399 LVNGNMLPIDMAGQAYLKGGDTNGEVS 425 (432) T ss_pred eecccccchhhccccccCCCCCCCCCC Confidence 1 1111 1123444333333 No 20 >protein:vir:105002 Length: 432 # NCBI annotation: putative phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459967;genbank:gi:85701382;genbank:GeneID:3882143 Probab=100.00 E-value=1.5e-81 Score=463.66 Aligned_cols=388 Identities=16% Similarity=0.120 Sum_probs=306.6 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhcc-CCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh-- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLL-GDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN-- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~-- 79 (392) ||||+++++.....++..............+..++. +.++..++.++|+++++|++||++||++||+||++++++.. T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~ 80 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGISPSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDEYG 80 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHHHHHhCCCcCccccchhhhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 999997755332222222222222233334444432 33567899999999999999999999999999999986532 Q ss_pred ----------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceE---EEE Q lcl|Aclame:pro 80 ----------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGM---YYN 146 (392) Q Consensus 80 ----------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~---~~~ 146 (392) ..++.+||++||+++||+.++.+++++||+|++++|+.+|++++|+|++|+.|++..+..+... ..+ T Consensus 81 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~~~ 160 (432) T protein:vir:10 81 IQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKMW 160 (432) T ss_pred eeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceEE Confidence 2245699999999999999999999999999999999999999999999999999887643221 112 Q ss_pred EEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH-- Q lcl|Aclame:pro 147 ITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD-- 224 (392) Q Consensus 147 ~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~-- 224 (392) +.+. ..+..+.+++++|||++++.+.+..+|+||+..+...+..+.+++++..++|+||++|++++++++...+++ T Consensus 161 y~~~--~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~e~~~ 238 (432) T protein:vir:10 161 YVVN--TGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNEDAKK 238 (432) T ss_pred EEEe--cCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHHH Confidence 2222 235567899999999998766667889999999999999999999999999999999999999988766554 Q ss_pred HHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc--cchHHHHHHH Q lcl|Aclame:pro 225 KDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ--QSSIQQISGM 302 (392) Q Consensus 225 ~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~--~~~~~~~~~~ 302 (392) +.++.+.+.+.+..|+|+++++++|++|++++.++.|+||+|.+++++++||++|||||++||..+.+ ++.+++..+| T Consensus 239 ~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~~~~~ 318 (432) T protein:vir:10 239 VFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQQF 318 (432) T ss_pred HHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHH Confidence 33455667788889999999999999999999999999999999999999999999999999975443 2445678899 Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcccc Q lcl|Aclame:pro 303 YASALNRYLRPAISELEYKLSD--------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLP 374 (392) Q Consensus 303 ~~~~l~p~l~~i~~~l~~~l~~--------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~ 374 (392) ++++|.|++..|+++|+++|++ +++||.+.+++.|.+++++.+..++++|++|+||+|++++..+++..|.. T Consensus 319 ~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~ggD~~ 398 (432) T protein:vir:10 319 YTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDRL 398 (432) T ss_pred HHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeE Confidence 9999999999999999999963 47889999999999999999999999999999999998855444322211 Q ss_pred c-ccCC--------CCCCCCCCCCCCC Q lcl|Aclame:pro 375 A-PENT--------NKKTTGQSNEPVP 392 (392) Q Consensus 375 ~-~~~~--------~~~~~gd~~~p~p 392 (392) . .-|. ...++|+.+.-.. T Consensus 399 ~~~~n~~~~~~~~~~~~k~~~~~~~~~ 425 (432) T protein:vir:10 399 LVNGNMLPIDMAGQAYLKGGDTNGEVS 425 (432) T ss_pred eecccccchhhccccccCCCCCCCCCC Confidence 1 1111 1123444333333 No 21 >protein:vir:6240 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Probab=100.00 E-value=3.2e-81 Score=461.88 Aligned_cols=389 Identities=14% Similarity=0.165 Sum_probs=302.8 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhc-cCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh-- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESL-LGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN-- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~-- 79 (392) ||||++++++...+................++... .+.+++.|++++||++++|++||++||++||+||++++++.. T Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~ia~~iA~lp~~~~~~~~~~ 80 (457) T protein:vir:62 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) T ss_pred CchhhhhhccccccccccccccccccchhhhhhccccccCCceechHHhhccHHHHHHHHHHHHhHhhCceEEEEecCCc Confidence 99998766544333221111111111122222211 234578899999999999999999999999999999987542 Q ss_pred ---------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCc---eEEEEE Q lcl|Aclame:pro 80 ---------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYEN---GMYYNI 147 (392) Q Consensus 80 ---------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~---~~~~~~ 147 (392) ..++.+||++||+++||+.++.+++++||||+++.++ .|++.+|+|++|++|++..+..++ ..++.+ T Consensus 81 ~~~~~~~~~~~ll~~pn~~~t~~~f~~~~~~~l~l~Gna~~~i~~~-~g~~~~l~~l~p~~v~v~~~~~~~~~~~~~~~y 159 (457) T protein:vir:62 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) T ss_pred cccccchHHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCcceEEEEeccCCccceeEEEE Confidence 3457899999999999999999999999999999655 789999999999999998765443 333444 Q ss_pred EecCCc-ceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH-- Q lcl|Aclame:pro 148 TFDDPK-IEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD-- 224 (392) Q Consensus 148 ~~~~~~-~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~-- 224 (392) .+.... ......+++++|||++++++++..+|+||+..++..|..+.++++++.++|+||++|++++++++..++++ T Consensus 160 ~~~~~g~~~~~~~~~~~eiih~r~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~ls~e~~~ 239 (457) T protein:vir:62 160 DIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLA 239 (457) T ss_pred EEccCCceeEEEeeCccceEEecCCCCCCceecccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEcCCCCCHHHHH Confidence 443322 22345789999999999999988899999999999999999999999999999999999999998776664 Q ss_pred HHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccccc---ch-HHHHH Q lcl|Aclame:pro 225 KDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ---SS-IQQIS 300 (392) Q Consensus 225 ~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~---~~-~~~~~ 300 (392) +.++.+.+.+.|.+|+|++++|++|++|++++.+++|+||+|++++++++||++|||||++||..++++ ++ +++.. T Consensus 240 ~~~~~~~~~~~G~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~eq~~~ 319 (457) T protein:vir:62 240 RAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNI 319 (457) T ss_pred HHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcccccchHHHHHH Confidence 334566777888999999999999999999999999999999999999999999999999999765543 33 45678 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCC--- Q lcl|Aclame:pro 301 GMYASALNRYLRPAISELEYKLSD-------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIP--- 370 (392) Q Consensus 301 ~~~~~~l~p~l~~i~~~l~~~l~~-------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~--- 370 (392) +|++++|.|+++.|+++|+++|++ +++||.+.+++.|.+++++.+.+++++|++|+||+|++++..+++. T Consensus 320 ~f~~~~l~P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~l~~~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~~g~~ 399 (457) T protein:vir:62 320 AFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLG 399 (457) T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCc Confidence 999999999999999999999964 3689999999999999999999999999999999999874443331 Q ss_pred cccccccCCCCCC---------CCC-----CCCCCC Q lcl|Aclame:pro 371 KDLPAPENTNKKT---------TGQ-----SNEPVP 392 (392) Q Consensus 371 ~e~~~~~~~~~~~---------~gd-----~~~p~p 392 (392) ++....-|+.+.. .+. +++|.+ T Consensus 400 D~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (457) T protein:vir:62 400 EKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPAD 435 (457) T ss_pred ceeeeccccccccccccccccCCCccCCCCccCCCC Confidence 1111111111111 111 111111 No 22 >protein:vir:10362 Length: 432 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858954;genbank:gi:32128419;genbank:GeneID:2648396 Probab=100.00 E-value=2.2e-81 Score=462.73 Aligned_cols=384 Identities=16% Similarity=0.217 Sum_probs=307.0 Q ss_pred Ccchhhhhhcccccccccccc---cccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecc Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSV---QSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKK 77 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~ 77 (392) -.||+|++++....+++..+. .+..+.......+....+.++..|++++||++|+|++||++||++||+||++++++ T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~v~~~~al~~~~V~~~i~~Ia~~ia~lp~~~y~~ 84 (432) T protein:vir:10 5 KKLGLLGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAIAAMPLTMYMR 84 (432) T ss_pred cccchhhhhHhhcCCccccccccccccccCcchhhhhcccccccCcccchhhhhcchHHHHHHHHHHHhhhhCceeEEEe Confidence 469999887665544433222 22222222222223334557888999999999999999999999999999999865 Q ss_pred hh------------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEE Q lcl|Aclame:pro 78 KN------------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYY 145 (392) Q Consensus 78 ~~------------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~ 145 (392) .. ..++.+||++||+++||+.++.+++++||||++++|+ +|++.+|+|++|++|++..+.++... | T Consensus 85 ~~~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~-~g~~~~L~~l~~~~v~v~~~~~g~~~-y 162 (432) T protein:vir:10 85 TPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT-DGRIESLQYLANDRLTITTDTKGNTA-Y 162 (432) T ss_pred cCCCcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCCceEEEEcCCCcEE-E Confidence 32 2346899999999999999999999999999999987 69999999999999999988766544 4 Q ss_pred EEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHH Q lcl|Aclame:pro 146 NITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDK 225 (392) Q Consensus 146 ~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~ 225 (392) .++.. .+..+.+++++|||+++++.++ .+|+||+..+++.+..+.+++++..++|+||++|++++++++..++ + T Consensus 163 ~~~~~---~g~~~~~~~~~iih~~~~~~dg-~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~--e 236 (432) T protein:vir:10 163 RYRRT---DGQMIDIPKQQIWKIMGYSLDG-ENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRFLTD--D 236 (432) T ss_pred EEEec---CceEEEEcCccEEEecCCCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCCCCH--H Confidence 44333 2456789999999999887766 6899999999999999999999999999999999999999876543 4 Q ss_pred HHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccccc----ch-HHHHH Q lcl|Aclame:pro 226 DKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ----SS-IQQIS 300 (392) Q Consensus 226 ~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~----~~-~~~~~ 300 (392) +++++.+.+.+..|+|++++|++|++|++++.+++|+||+|++++++++||++|||||++||..+.++ ++ +++.. T Consensus 237 ~~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~t~~~~sn~e~~~~ 316 (432) T protein:vir:10 237 QYDSFAKKVSGSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQL 316 (432) T ss_pred HHHHHHHHHhhhhhCCCceecCCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCcccccchHHHHHH Confidence 45667788888999999999999999999999999999999999999999999999999999754322 33 35678 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccc Q lcl|Aclame:pro 301 GMYASALNRYLRPAISELEYKLSD-------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDL 373 (392) Q Consensus 301 ~~~~~~l~p~l~~i~~~l~~~l~~-------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~ 373 (392) +|+++||.|++..|+++|+++|++ +++||...+++.|.+++++.+.+++++|++|+||+|++++..+++.++. T Consensus 317 ~f~~~tl~P~~~~ie~~ln~kL~~~~~~~~~~~~fd~~~ll~~d~~~r~~~~~~~~~~G~~T~NE~R~~~glppi~g~~~ 396 (432) T protein:vir:10 317 GFLSMTLSPWLRRIEQSIALNLLSPAERRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGNAA 396 (432) T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCcc Confidence 999999999999999999999964 3789999999999999999999999999999999999885555443322 Q ss_pred ccccCCC--CCCC-CCCCCCCC Q lcl|Aclame:pro 374 PAPENTN--KKTT-GQSNEPVP 392 (392) Q Consensus 374 ~~~~~~~--~~~~-gd~~~p~p 392 (392) ...-+.+ |+.. |....|-| T Consensus 397 ~~~~~~~~~pl~~~~~~~~~~~ 418 (432) T protein:vir:10 397 VLTVQSAMVPLDSIGLQASPEP 418 (432) T ss_pred eEeecCcccchhhhcccCCCCC Confidence 1111222 2221 22222222 No 23 >protein:vir:93610 Length: 454 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Probab=100.00 E-value=3.1e-81 Score=461.94 Aligned_cols=387 Identities=15% Similarity=0.168 Sum_probs=302.0 Q ss_pred hhhhhcccccccccccccccccCcchhh-hhhhcc--CCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh-- Q lcl|Aclame:pro 5 ILNFINQTNDPPEAGSVQSYFPDGNDAQ-IMESLL--GDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN-- 79 (392) Q Consensus 5 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~-- 79 (392) +||+|++..........-.......... +.+.+. +.++..|++++||++++|++||++||++||+||+++++++. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~al~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~g 80 (454) T protein:vir:93 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) T ss_pred CCCccccCcccccccccccchhhhhhhhhhhhhhcchhhcCcccChHHhhccHHHHHHHHHHHHhhccCceEEEEeccCC Confidence 8999887544322211111111111111 111222 23577899999999999999999999999999999997542 Q ss_pred ----------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEe Q lcl|Aclame:pro 80 ----------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITF 149 (392) Q Consensus 80 ----------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~ 149 (392) ..++.+||++||+++||+.++.+|+++||+|++++|+.+|++++|+|++|++|++..+.++...|.+... T Consensus 81 ~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~y~~~~~ 160 (454) T protein:vir:93 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPD 160 (454) T ss_pred ccchhhhHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCcceEEEEcCCCcEEEEEEec Confidence 3467899999999999999999999999999999999999999999999999999988766544433333 Q ss_pred cCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH--HHH Q lcl|Aclame:pro 150 DDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD--KDK 227 (392) Q Consensus 150 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~--~~~ 227 (392) .....+..+.+++++|||+++....+..+|+||+..+...+..+.+++++..++|+||++|++++++++..++++ +.+ T Consensus 161 ~~~~~~~~~~~~~~eViH~k~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~ 240 (454) T protein:vir:93 161 RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLK 240 (454) T ss_pred cccccceeEEecCcceEEeccCCCCCCceeccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEecCCCCCHHHHHHHH Confidence 333345567899999999997656666789999999999999999999999999999999999999998766554 334 Q ss_pred HHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc-cch-HHHHHHHHHH Q lcl|Aclame:pro 228 ASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-QSS-IQQISGMYAS 305 (392) Q Consensus 228 ~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-~~~-~~~~~~~~~~ 305 (392) +.+.+.+.+ .|+|+++||++|++|++++.+++|+||+|++++++++||++|||||++||+.+++ +++ +++..+|++. T Consensus 241 ~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~ 319 (454) T protein:vir:93 241 SNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQ 319 (454) T ss_pred HHHHHHhcc-cccCCceeccCCceEEEcccChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCcchhHHHHHHHHHHH Confidence 455555555 7899999999999999999999999999999999999999999999999976543 344 4567899999 Q ss_pred HHHHHHHHHHHHHHHHhhh----hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcccccc-cCCC Q lcl|Aclame:pro 306 ALNRYLRPAISELEYKLSD----HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAP-ENTN 380 (392) Q Consensus 306 ~l~p~l~~i~~~l~~~l~~----~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~-~~~~ 380 (392) +|.|++..|+++|+++|++ +++||.+.+++.|.+++++.+..++++|++|+||+|++++..+++..|.... -+.. T Consensus 320 ~l~P~~~~ie~~ln~~L~~~~~~~~~f~~~~ll~~D~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~ggD~~~~~~~~~ 399 (454) T protein:vir:93 320 CLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNY 399 (454) T ss_pred HHHHHHHHHHHHHHHhhcCCCCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeeccCcc Confidence 9999999999999999953 5889999999999999999999999999999999999886555543222211 0000 Q ss_pred C-----------CCCCCCCC----CCC Q lcl|Aclame:pro 381 K-----------KTTGQSNE----PVP 392 (392) Q Consensus 381 ~-----------~~~gd~~~----p~p 392 (392) + .+..+.++ |.| T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (454) T protein:vir:93 400 SLEALSRRDAREDPFASSGKTASVPQA 426 (454) T ss_pred chHhhhccCcccCCCCCCccCCCCCCC Confidence 0 00011111 111 No 24 >protein:vir:105064 Length: 421 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006584;genbank:gi:46402090;genbank:GeneID:2777930 Probab=100.00 E-value=4.4e-81 Score=461.11 Aligned_cols=374 Identities=15% Similarity=0.176 Sum_probs=299.9 Q ss_pred chhhhhhcccccccccccccccccCcchhhhh---hhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIM---ESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~ 79 (392) |.|+++|+++....+... .+..++ ....+.++..|++++||++++|++||++||++||+||+++++++. T Consensus 1 m~~~~~~~~~~~~~s~~~--------~w~~~~~~~~~~~~~~g~~vt~~~al~~~~v~~~i~~Ia~~iA~lp~~~~~~~~ 72 (421) T protein:vir:10 1 MFIPQMFEGKKRSVSGGG--------FWEAMLGGVRSSHSKAGVMITPETALALSAVRACVTLLAESVAQLPVELYRRDK 72 (421) T ss_pred CCCcchhcccccccCcch--------hhHHHhhhhccCcccCCceechHHhhccHHHHHHHHHHHHhhccCceEEEEEcC Confidence 999999988765532211 111111 122334577899999999999999999999999999999986432 Q ss_pred -------------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEE Q lcl|Aclame:pro 80 -------------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYN 146 (392) Q Consensus 80 -------------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~ 146 (392) ..++.+||++||+++||+.++.+++++||||++++|+.+|+|++|||++|+.|++..+.++. +++. T Consensus 73 ~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~v~~~~~g~-~~y~ 151 (421) T protein:vir:10 73 NGGRQRATDHPIYDLIHSQPNKKDTSFEYFEQQQGLLGLEGNCYSIIDRDGKGYPKELIPINPKKVIVLKGPDGM-PYYE 151 (421) T ss_pred CCceeecccchHHHHHhhcccCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEecCceEEEEECCCce-EEEE Confidence 23467899999999999999999999999999999999999999999999999998876654 4433 Q ss_pred EEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCC----Cc Q lcl|Aclame:pro 147 ITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGG----LL 222 (392) Q Consensus 147 ~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~----~~ 222 (392) +... + ..++.++|+|+++++.++ .+|+||+..++..+..+.+++++..++|+||++|+|++++++.. .+ T Consensus 152 ~~~~----g--~~~~~~eiih~~~~~~d~-~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~ 224 (421) T protein:vir:10 152 IPEI----G--ETLPMRMMHHVKVFSLDG-YIGSSPIQTNADVLGLNLAVEEHASAVFRRGATMSGVIERPKEAPAIKSQ 224 (421) T ss_pred EcCC----C--cEEchhhEEEecCcCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCccCccCCH Confidence 3221 2 368999999999987765 68999999999999999999999999999999999999998643 22 Q ss_pred h--HHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc-cch-HHH Q lcl|Aclame:pro 223 S--DKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-QSS-IQQ 298 (392) Q Consensus 223 ~--~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-~~~-~~~ 298 (392) + ++.++.+.+.+.|..|+|++++|++|++|++++.+++|+||+|.+++++++||++|||||++||..+.+ +++ +++ T Consensus 225 e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~ 304 (421) T protein:vir:10 225 EKIDQLLAKWTDRYSGINNMFSVALLQEGMSYKQMSQDNEKAQLLQSRQWGVEEVCRLYKIPPHMVQMLAKATNNNIEHQ 304 (421) T ss_pred HHHHHHHHHHHHHhcCccccCcceecCCCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCcCCccccHHHH Confidence 2 234567778888899999999999999999999999999999999999999999999999999975543 344 456 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCc Q lcl|Aclame:pro 299 ISGMYASALNRYLRPAISELEYKLSD-------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPK 371 (392) Q Consensus 299 ~~~~~~~~l~p~l~~i~~~l~~~l~~-------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~ 371 (392) ...|+++||.|++..|+++|+++|++ +++||...+++.|.+++++.+..++++|++|+||+|++++..+++.. T Consensus 305 ~~~f~~~tl~P~~~~ie~~ln~kL~~~~~~~~~~v~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~gg 384 (421) T protein:vir:10 305 GLQFVMYTLLAWLKRHEGALQRDLLLPSERRDLYIEFNVSGLLRGDQKSRYESYALGRQWGWLSVNDIRRMENLPPIAGG 384 (421) T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCc Confidence 78999999999999999999999964 47899999999999999999999999999999999998855554432 Q ss_pred cccc-ccCC---CCCCCCCCCCC--CC Q lcl|Aclame:pro 372 DLPA-PENT---NKKTTGQSNEP--VP 392 (392) Q Consensus 372 e~~~-~~~~---~~~~~gd~~~p--~p 392 (392) |... .-++ .....++.... .| T Consensus 385 D~~~~~~n~~~~~~~~~~~~~~~~~~~ 411 (421) T protein:vir:10 385 DKYLTPLNMVDSAQIIPGDKKPTAQQM 411 (421) T ss_pred ceeeeccccccccccccCCCCcccccC Confidence 2211 1111 01111111111 11 No 25 >protein:vir:81152 Length: 411 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285809;genbank:gi:148747730;genbank:GeneID:5247195 Probab=100.00 E-value=2.8e-80 Score=456.70 Aligned_cols=375 Identities=16% Similarity=0.128 Sum_probs=302.0 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) ||||+++++...+.... .......+..+ .+ +..++++.|+++++|++||++||++||++|++++++.. T Consensus 1 MG~~~~~~~~~~~~~~~------~~~~~~~~~~~-~g--~~~~~~~~al~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~~~ 71 (411) T protein:vir:81 1 MGWWSRLTRFFRPRNET------VDMTNPLLLQW-LG--VDPDTPRNQLSEATYFACLKILSESLGKLPLKMYQKTERGI 71 (411) T ss_pred CchHHHHHhhccCcccc------cccchHHHHHH-hc--CcccChhhhhccHHHHHHHHHHHHhHhhCceeEEEecCCce Confidence 99999876644332211 11222222332 22 34578899999999999999999999999999986542 Q ss_pred ---------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCce---EEEEE Q lcl|Aclame:pro 80 ---------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENG---MYYNI 147 (392) Q Consensus 80 ---------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~---~~~~~ 147 (392) +.++.+||++||+++||+.++.+++++||||++++|+ .|++.+|+|++|+.|++..+..+.. ....+ T Consensus 72 ~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~-~g~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~ 150 (411) T protein:vir:81 72 VKSDREELYNLLKLRPNPYMTSSVFWSTVEMNRNHYGNAYVWCQYS-GPQLQALWILPSQYVTIVVDDRGLLGEKNAIWY 150 (411) T ss_pred eeecccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEec-CCceEEEEEECCceEEEEEcCcccccccceEEE Confidence 2345799999999999999999999999999999998 6999999999999999998865422 11223 Q ss_pred EecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH--H Q lcl|Aclame:pro 148 TFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD--K 225 (392) Q Consensus 148 ~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~--~ 225 (392) .+.....+..+.+++++|||+|++.+.+..+|+||+..++..+....+++++..++|+||++|+|++++++..++++ + T Consensus 151 ~~~~~~~g~~~~~~~~eiih~k~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~ 230 (411) T protein:vir:81 151 RYNDPYDGKMYVFRNDEILHFKTSVTFDGITGLSVRDVLKHTVDGALESQKFMNNLYKTGLTGKAVLEYTGDLNQEARDR 230 (411) T ss_pred EEEecCCceEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCHHHHHH Confidence 33333456678899999999997666666799999999999999999999999999999999999999998766654 3 Q ss_pred HHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc-cch-HHHHHHHH Q lcl|Aclame:pro 226 DKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-QSS-IQQISGMY 303 (392) Q Consensus 226 ~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-~~~-~~~~~~~~ 303 (392) .++.+.+.+.+.+|+|+++++++|++|++++.++.|+||+|++++++++||++|||||++||+.+++ +++ +++...|+ T Consensus 231 ~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~n~e~~~~~f~ 310 (411) T protein:vir:81 231 LVKGFEQFANGSKNAGKIIPVPLGMKLVPLDIKLTDSQFFELKKYTALQIAAAFGIKPNQINDYEKSSYASAEAQNLAFY 310 (411) T ss_pred HHHHHHHHhcCccccCCceecCCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCchhHHHHHHHHH Confidence 4566777788889999999999999999999999999999999999999999999999999976543 234 45678999 Q ss_pred HHHHHHHHHHHHHHHHHHhhh--------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccccc Q lcl|Aclame:pro 304 ASALNRYLRPAISELEYKLSD--------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPA 375 (392) Q Consensus 304 ~~~l~p~l~~i~~~l~~~l~~--------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~ 375 (392) +.+|.|++.+|+++|+++|++ +++||.+.+++.|.+++++.+..++++|++|+||+|++++..+.+..|.+. T Consensus 311 ~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~g~~t~NE~R~~~gl~p~~ggD~~~ 390 (411) T protein:vir:81 311 VDTLLYVLKQYEEEITYKILSNDLISQGHYFKFNVNVILRADIKTQMDSLSTAVQNGIMTPNEARDYLDMPADDYGNNLM 390 (411) T ss_pred HHHHHHHHHHHHHHHHhhcCChhhcCCCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeee Confidence 999999999999999999863 368999999999999999999999999999999999987444332222221 Q ss_pred c-cCCC--------CCCCCCC Q lcl|Aclame:pro 376 P-ENTN--------KKTTGQS 387 (392) Q Consensus 376 ~-~~~~--------~~~~gd~ 387 (392) . -+.- ...|||+ T Consensus 391 ~~~n~~pl~~~~~~~~kgGd~ 411 (411) T protein:vir:81 391 ANGNYIPLSMLGANYGKGGDS 411 (411) T ss_pred eccCccchhhhhhhhccCCCC Confidence 1 1111 1245665 No 26 >protein:vir:101648 Length: 518 # NCBI annotation: gp11 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654766;genbank:gi:109302764;genbank:GeneID:4156082 Probab=100.00 E-value=4.6e-80 Score=455.54 Aligned_cols=382 Identities=15% Similarity=0.192 Sum_probs=301.0 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccC---CCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecc Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLG---DNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKK 77 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~ 77 (392) ||.. | .+....+.....++++. ....+.+..+ .....+....++++++|++||++||++||+||++++++ T Consensus 1 ~~~~--~--~~~~~~p~~~e~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~V~acV~~IA~~iA~lpl~l~~~ 73 (518) T protein:vir:10 1 MLLA--N--GQTLSAPAMAELSPQMQ---DSYYYAPAVGMQLERQFSLYGGIYKNQPWVRTVIAKRAQALARLPVKCMFT 73 (518) T ss_pred Cccc--C--ceeecCchhhhhhhhhh---cccccccccceecccccchhhHHHhhhHHHHHHHHHHHHhhccCceEEEEE Confidence 3221 1 11111111011111111 1111111111 11123344568899999999999999999999999875 Q ss_pred hh-----------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEE Q lcl|Aclame:pro 78 KN-----------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYN 146 (392) Q Consensus 78 ~~-----------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~ 146 (392) .. ..++.+||++||+++||+.++.+|+++||+|+++.|+.+|++++|+|++|+.|++..+.+++.++|. T Consensus 74 ~~~~~~~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~v~v~~~~~~~~~~y~ 153 (518) T protein:vir:10 74 SGDTETEESDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKRNSRTGRYEYY 153 (518) T ss_pred cCCCceeccchHHHHHHcCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCCceEEEEcCCCCEEEEE Confidence 43 3468899999999999999999999999999999999999999999999999999999888888888 Q ss_pred EEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH-- Q lcl|Aclame:pro 147 ITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD-- 224 (392) Q Consensus 147 ~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~-- 224 (392) +....+..+..+.+++++|||+|++++++..+|+||+..++..|....++++++.++|+||++|+|++++++..++++ T Consensus 154 ~~~~~~~~~~~~~~~~~eViHir~~s~dg~~~G~spi~~a~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~ls~e~~~ 233 (518) T protein:vir:10 154 FQAGAGVGTQLVSFADDEVVPIRFFNPDGLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEKRLSEAAQQ 233 (518) T ss_pred EEecCCccceEEEecCCcEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHH Confidence 877776667778999999999999999998899999999999999999999999999999999999999998766554 Q ss_pred HHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc-cch-HHHHHHH Q lcl|Aclame:pro 225 KDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-QSS-IQQISGM 302 (392) Q Consensus 225 ~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-~~~-~~~~~~~ 302 (392) +.++.+.+.+.|..|+|+++||++|++|++++++++|+||+|++++++++||++|||||++||..+.+ +++ +++...| T Consensus 234 ~~k~~~~~~~~G~~nag~v~vL~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~lg~~~~~t~sn~eq~~~~f 313 (518) T protein:vir:10 234 RLREQFDRAHSGSSNTGKTMVVEEGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILDRATFSNISAQMRAF 313 (518) T ss_pred HHHHHHHHHhcCccccCcceEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCCCCCchhHHHHHHHH Confidence 33556777888889999999999999999999999999999999999999999999999999975443 334 5567899 Q ss_pred HHHHHHHHHHHHHHHHHHHhhh------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcccccc Q lcl|Aclame:pro 303 YASALNRYLRPAISELEYKLSD------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAP 376 (392) Q Consensus 303 ~~~~l~p~l~~i~~~l~~~l~~------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~ 376 (392) ++.+|.|++..|+++|+++|++ +++||.+.+++.|.+++++.+..++++|++|+||+|+++ |++|.+.+.. T Consensus 314 ~~~tL~P~l~~ie~~ln~~L~~~~~~~~~~~fd~~~llr~D~~~r~~~~~~~~~~G~lT~NE~R~~~---Gl~pie~~~g 390 (518) T protein:vir:10 314 YRDTMAIPIARIQSAMDKYVGQYWVRKNRMKFDIDDVIQPDWEAKSESTQKMVNSGVATPNEGREIM---GLPRSDDPKA 390 (518) T ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh---CCCCCCCCCC Confidence 9999999999999999999975 478999999999999999999999999999999999987 4444332222 Q ss_pred c------CCCCCC---C-CCC--CCCCC Q lcl|Aclame:pro 377 E------NTNKKT---T-GQS--NEPVP 392 (392) Q Consensus 377 ~------~~~~~~---~-gd~--~~p~p 392 (392) + ++.|+. . +.. +.|.| T Consensus 391 D~~~~~~n~~pl~~~~~~~~~g~~~~~~ 418 (518) T protein:vir:10 391 DELYANSALQPLGATPDGAVEGEEAPAP 418 (518) T ss_pred CeeeecccceecccccccccCCCCCCCC Confidence 2 111110 0 000 01111 No 27 >protein:vir:100150 Length: 437 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneID:2744197 Probab=100.00 E-value=4e-80 Score=455.87 Aligned_cols=384 Identities=16% Similarity=0.186 Sum_probs=301.6 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhc---cCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecc Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESL---LGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKK 77 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~ 77 (392) |.=++=+++.+.... .....+.+.. ..+..+++.+ .+..+..|++++||++|+|++||++||++||+||++++++ T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~g~~~s-~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~ci~~Ia~~ia~lp~~~~~~ 78 (437) T protein:vir:10 1 MKQGKQRALGRIKSS-FLKWLGVPIS-LTDGSFWSAWGGMGSSSGETVTADSALQLSAVWSCVRLIAETIATLPLNLYQT 78 (437) T ss_pred CCcchhhhhhhhHHh-hhhhcCCccc-CCchhHHHhhcccccCCCceechHhhhccHHHHHHHHHHHHHHhhCceeEEEE Confidence 333333333322211 1112222221 2223333333 3446778999999999999999999999999999999875 Q ss_pred hh-------------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEE Q lcl|Aclame:pro 78 KN-------------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMY 144 (392) Q Consensus 78 ~~-------------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~ 144 (392) +. ..++.+||++||+++||+.++.+++++||+|++++|+ .|++++|||++|+.|++..+.++... T Consensus 79 ~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~-~g~~~~L~~l~p~~v~i~~~~~g~~~- 156 (437) T protein:vir:10 79 KPDGTRVLAKQHRLYTVIHSQPNAENTAAEFWEVIVASMLLWGNGYARKLRS-AGVLIGLELMLPQRTTVKRLTSGALQ- 156 (437) T ss_pred cCCCceeeccccHHHHHhhccCCcCCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCcceEEEECCCCeEE- Confidence 32 2345799999999999999999999999999999998 59999999999999999987665444 Q ss_pred EEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH Q lcl|Aclame:pro 145 YNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD 224 (392) Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~ 224 (392) +.++.. .+....+++++|||+|+++.++ .+|+||+..++..+..+.+++++..++|+||++|+|++++++...+++ T Consensus 157 y~~~~~---~g~~~~~~~~dIih~r~~~~d~-~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~ 232 (437) T protein:vir:10 157 YTYRNV---DGTVSTLAEDDVFHVRGFSLDG-LMGLTPIQYAREVLGNSTAANKTSASVFRNGLRPSGVLSTDQILQKEK 232 (437) T ss_pred EEEEec---CceEEEEccccEEEecCcCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHH Confidence 333332 2456789999999999987765 689999999999999999999999999999999999999998766554 Q ss_pred --HHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccccc---ch-HHH Q lcl|Aclame:pro 225 --KDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ---SS-IQQ 298 (392) Q Consensus 225 --~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~---~~-~~~ 298 (392) +.++.+.+.+.|..|+|+++||++|++|+++++++.|+||+|++++++++||++|||||++||+.+.++ ++ .++ T Consensus 233 ~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~ 312 (437) T protein:vir:10 233 RAEIRTDLAEQFGGAMQAGKTMVLEAGMKYQAITMNPGDVQLLETRAFNIEEICRWYRVPPFMVGHSEKSTSWGTGIEQQ 312 (437) T ss_pred HHHHHHHHHHHhcCccccCcceeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccchHHHH Confidence 345667778889999999999999999999999999999999999999999999999999999765432 33 456 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCc Q lcl|Aclame:pro 299 ISGMYASALNRYLRPAISELEYKLSD-------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPK 371 (392) Q Consensus 299 ~~~~~~~~l~p~l~~i~~~l~~~l~~-------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~ 371 (392) ...|++.||.|++..|+++|+++|++ +++||.+.+++.|.+++++.+..++++|++|+||+|++++..++++. T Consensus 313 ~~~f~~~tl~P~~~~ie~~l~~kll~~~e~~~~~~~fd~~~ll~~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~gg 392 (437) T protein:vir:10 313 TLGFLTFTLRPWLTRIEQAARRSLLRPGERDQFYAEFSVEGLLRADSAGRAAFYSTMTQNGLMTRDECRAKENLPPMGGN 392 (437) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccCceEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Confidence 78999999999999999999999964 37899999999999999999999999999999999999866555543 Q ss_pred ccccc--cCCCCCCCCCCCCCCC Q lcl|Aclame:pro 372 DLPAP--ENTNKKTTGQSNEPVP 392 (392) Q Consensus 372 e~~~~--~~~~~~~~gd~~~p~p 392 (392) +.... -++.|+..++++.+.. T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~ 415 (437) T protein:vir:10 393 AAVLTVQSALLPIDKLGEHTTAT 415 (437) T ss_pred cceEeecCcccchhhccCcCCCc Confidence 32221 1222222222221111 No 28 >protein:vir:7853 Length: 518 # NCBI annotation: gp10 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817460;genbank:gi:29565889;genbank:GeneID:1259085 Probab=100.00 E-value=5.1e-80 Score=455.28 Aligned_cols=381 Identities=14% Similarity=0.184 Sum_probs=302.7 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCC---CCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecc Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGD---NNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKK 77 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~ 77 (392) || +-|-..-. .++....+++. .+...+.+..+. ....+....++++|+|++||++||++||+||++++++ T Consensus 1 ~~--~~~~~~~~--~p~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~acV~~IA~~iA~lp~~l~~~ 73 (518) T protein:vir:78 1 ML--LANGQTLS--APAMAELSPQM---QDSYYYAPAVGMQLERQFSLYGGIYKNQPWVRTVIAKRAQALARLPVKCMFT 73 (518) T ss_pred Cc--ccCceeec--cchhhhhhhhh---hhcccccceeceecccccchhhHHhhhhHHHHHHHHHHHHhhccCceEEEEE Confidence 32 22221111 11111111121 111111111111 1123445668899999999999999999999999875 Q ss_pred hh-----------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEE Q lcl|Aclame:pro 78 KN-----------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYN 146 (392) Q Consensus 78 ~~-----------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~ 146 (392) +. ..++.+||++||+++||+.++.+|+++||+|+++.|+.+|++++|+|++|++|++..+.+++...+. T Consensus 74 ~~~~~~~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~Vtv~~~~~~~~~~y~ 153 (518) T protein:vir:78 74 SGDTETEEHDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKRNSRTGRYEYY 153 (518) T ss_pred cCCccccccchHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEECCCceEEEEcCCCCEEEEE Confidence 43 3468899999999999999999999999999999999999999999999999999999888888888 Q ss_pred EEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH-- Q lcl|Aclame:pro 147 ITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD-- 224 (392) Q Consensus 147 ~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~-- 224 (392) +.......+..+.+++++|||+|++++++..+|+||+..++..|....+++++..++|+||++|+|++++++..++++ T Consensus 154 ~~~~~~~~~~~~~~~~~eIiHir~~~~dg~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~Ng~~p~gvl~~~~~ls~e~~~ 233 (518) T protein:vir:78 154 FQAGAGVGTQLVSFADDEVVPIRFFNPDGLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEKRLSPEAQQ 233 (518) T ss_pred EEecCCccceeEEecCCcEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHH Confidence 877776677788999999999999999988899999999999999999999999999999999999999998766654 Q ss_pred HHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc-cch-HHHHHHH Q lcl|Aclame:pro 225 KDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-QSS-IQQISGM 302 (392) Q Consensus 225 ~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-~~~-~~~~~~~ 302 (392) +.++.+.+.+.|..|+|++++|++|++|++++++++|+||+|++++++++||++|||||++||+.+++ +++ +++...| T Consensus 234 ~~k~~~~~~~~G~~nag~~~vL~~G~~~~~l~~~~~d~q~le~r~~~~~eIa~afgVPp~~lg~~~~st~sn~e~~~~~f 313 (518) T protein:vir:78 234 RLREQFDRAHAGSSNTGKTMVVEEGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILDRATFSNISAQMRAF 313 (518) T ss_pred HHHHHHHHHhcCcccCCceeEcCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCCCCCchhHHHHHHHH Confidence 33556777888889999999999999999999999999999999999999999999999999976543 234 5667899 Q ss_pred HHHHHHHHHHHHHHHHHHHhhh------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcccccc Q lcl|Aclame:pro 303 YASALNRYLRPAISELEYKLSD------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAP 376 (392) Q Consensus 303 ~~~~l~p~l~~i~~~l~~~l~~------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~ 376 (392) ++++|.|++..|+++|+++|++ +++||.+.+++.|.+++++.+..++++|++|+||+|+++ |++|.+.+.. T Consensus 314 ~~~tL~P~~~~ie~eln~~L~~~~~~~~~~~fd~~~Llr~D~~~r~~~~~~~~~~G~lT~NE~R~~~---gl~pie~~~g 390 (518) T protein:vir:78 314 YRDTMAIPIARIQSAMDKYVGQYWVRKNRMKFDIDDVIQPDWEAKSESTQKMVNSGVATPNEGREIM---GLPRSDDPKA 390 (518) T ss_pred HHHHHHHHHHHHHHHHHHhhcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh---CCCCCCCCCC Confidence 9999999999999999999975 478999999999999999999999999999999999987 4444332222 Q ss_pred c------CCCCCC-------CCCCCCCCC Q lcl|Aclame:pro 377 E------NTNKKT-------TGQSNEPVP 392 (392) Q Consensus 377 ~------~~~~~~-------~gd~~~p~p 392 (392) + ++.|+. .|++. |.| T Consensus 391 D~~~v~~n~~pl~~~~~~~~~g~~~-~~~ 418 (518) T protein:vir:78 391 DELYANSALQPLGATPDGAVEGEEA-PAP 418 (518) T ss_pred ceeeecccceecccccccccCCCCC-CCC Confidence 2 111111 01111 111 No 29 >protein:vir:1326 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi:9631143;uniprot:Q9ZXB2;genbank:GeneID:2715872 Probab=100.00 E-value=9e-80 Score=453.93 Aligned_cols=389 Identities=14% Similarity=0.176 Sum_probs=302.3 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhh-ccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh-- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMES-LLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN-- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~-- 79 (392) ||||+.++++...+.............+..++.. ..+.++..|++++||++++|++||++||++||+||++++++.. T Consensus 1 Mg~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~V~~~~al~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~~ 80 (457) T protein:vir:13 1 MGFWSALFGRGHSPALDGIEARAWEPYDPSIYNLGAVAASGETVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGS 80 (457) T ss_pred CchhhhhhcccccccccccccccccccchHHHhhcccccCCceechHHhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 9999877665444432222221111112222222 2344678999999999999999999999999999999998543 Q ss_pred ---------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCc---eEEEEE Q lcl|Aclame:pro 80 ---------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYEN---GMYYNI 147 (392) Q Consensus 80 ---------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~---~~~~~~ 147 (392) ..++..||.+||+++||+.++.+++++||+|++|.++ .|++++|+|++|++|++..+..++ ..++.+ T Consensus 81 ~~~~~~~~l~~~ln~~~n~~t~~~f~~~~~~~lll~Gna~~~i~~~-~g~~~~l~~l~p~~v~v~~~~~~~~~~~~~~~y 159 (457) T protein:vir:13 81 RKEIVTPEWLDYPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWQ-GPNIVGLDVLDPTKIHVHMVMVDGLRRKVFEAY 159 (457) T ss_pred ccccccchHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEccCceEEEEecCCCccceeEEEE Confidence 1224445457999999999999999999999999766 699999999999999998776554 334444 Q ss_pred EecCCc-ceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH-- Q lcl|Aclame:pro 148 TFDDPK-IEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD-- 224 (392) Q Consensus 148 ~~~~~~-~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~-- 224 (392) .+.... ......+++++|||++++++++.++|+||+..++..|..+.+++++..++|+||++|++++++++..++++ T Consensus 160 ~~~~~~~~~~~~~~~~~diih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~ls~e~~~ 239 (457) T protein:vir:13 160 DIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGSKFFANGAMPGAVVEVPGTMSEEGLA 239 (457) T ss_pred EEecCCceeeEEeeCccceEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcCCCCCHHHHH Confidence 444322 22345689999999999999988899999999999999999999999999999999999999998776654 Q ss_pred HHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccccc---ch-HHHHH Q lcl|Aclame:pro 225 KDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ---SS-IQQIS 300 (392) Q Consensus 225 ~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~---~~-~~~~~ 300 (392) +.++.+.+.+.|..|+|+++||++|++|+++++++.|+||+|++++++++||++|||||++||..+.++ ++ +++.. T Consensus 240 ~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~eq~~~ 319 (457) T protein:vir:13 240 RAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNI 319 (457) T ss_pred HHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcccccchHHHHHH Confidence 345567778888999999999999999999999999999999999999999999999999999765433 33 45677 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCC--- Q lcl|Aclame:pro 301 GMYASALNRYLRPAISELEYKLSD-------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIP--- 370 (392) Q Consensus 301 ~~~~~~l~p~l~~i~~~l~~~l~~-------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~--- 370 (392) +|++++|.|+++.|+++|+++|++ +++||.+.+++.|.+++++.+..++++|++|+||+|++++..+++. T Consensus 320 ~f~~~tl~P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~l~~~D~~~r~~~~~~~~~~G~~T~NE~R~~~gl~Pi~~g~~ 399 (457) T protein:vir:13 320 AFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLG 399 (457) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccccCceeEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcc Confidence 999999999999999999999964 3789999999999999999999999999999999999874444321 Q ss_pred cccccccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 371 KDLPAPENTNKKTTGQSNEPVP 392 (392) Q Consensus 371 ~e~~~~~~~~~~~~gd~~~p~p 392 (392) ++....-|+.++......++.| T Consensus 400 d~~~~~~n~~~~~~~~~~~~~~ 421 (457) T protein:vir:13 400 EKYRVPLNLGEVGEEPEPEPAP 421 (457) T ss_pred cceeeccccccccccccccccC Confidence 1111111111111100111111 No 30 >protein:vir:102080 Length: 429 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512313;genbank:gi:89152482;genbank:GeneID:3953073 Probab=100.00 E-value=4.7e-80 Score=455.47 Aligned_cols=385 Identities=16% Similarity=0.110 Sum_probs=302.8 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhcc-CCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh-- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLL-GDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN-- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~-- 79 (392) ||||+.|.+...+.+... .........+..++. +.++..++.++|+++++|++||++||++||+||++++++.. T Consensus 1 M~~~~~~f~~~~r~~~~~---~~~~~~~~~~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~l~~~~~~~~~~~ 77 (429) T protein:vir:10 1 MDSVKKFFNFEKRQTSQV---IELNKDDEKLLEWLGISPSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDEYG 77 (429) T ss_pred CchhhhhhcccccCcccc---cccCCChHHHHHHhcCCCCcceechhhhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 999954433211111111 111112222333322 33567789999999999999999999999999999987532 Q ss_pred ----------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEE---EE Q lcl|Aclame:pro 80 ----------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMY---YN 146 (392) Q Consensus 80 ----------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~---~~ 146 (392) +.++.+||++||+++||+.++.+++++||+|+++.|+.+|++++|+|++|++|++..+..+.... .+ T Consensus 78 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~~~~~~~~~~~ 157 (429) T protein:vir:10 78 IQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKMW 157 (429) T ss_pred eeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceEE Confidence 23457999999999999999999999999999999999999999999999999999886542211 11 Q ss_pred EEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH-- Q lcl|Aclame:pro 147 ITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD-- 224 (392) Q Consensus 147 ~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~-- 224 (392) +.+. ..+..+.+++++|||+++..+.+..+|+||+..++..+..+.+++++..++|+||++|++++++++...+++ T Consensus 158 ~~~~--~~g~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~l~~e~~~ 235 (429) T protein:vir:10 158 YVVN--TGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNEDAKK 235 (429) T ss_pred EEEc--cCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHHH Confidence 2222 235567899999999998766677889999999999999999999999999999999999999988766554 Q ss_pred HHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc-cch-HHHHHHH Q lcl|Aclame:pro 225 KDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-QSS-IQQISGM 302 (392) Q Consensus 225 ~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-~~~-~~~~~~~ 302 (392) +.++.+.+.+.+..|+|+++++++|++|++++.++.|+|++|.+++++++||++|||||++||+.+.+ +++ .++..+| T Consensus 236 ~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~sn~e~~~~~f 315 (429) T protein:vir:10 236 VFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQQF 315 (429) T ss_pred HHHHHHHHHhccccccCceeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHH Confidence 33455667788889999999999999999999999999999999999999999999999999875443 334 5678899 Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcccc Q lcl|Aclame:pro 303 YASALNRYLRPAISELEYKLSD--------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLP 374 (392) Q Consensus 303 ~~~~l~p~l~~i~~~l~~~l~~--------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~ 374 (392) ++.+|.|++.+|+++|+++|++ +++||.+.+++.|.+++++.+.+++++|++|+||+|++++..+++..|.. T Consensus 316 ~~~~l~P~~~~ie~~ln~kl~~~~~~~~g~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~ 395 (429) T protein:vir:10 316 YTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDRL 395 (429) T ss_pred HHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCee Confidence 9999999999999999999963 46899999999999999999999999999999999998854444322211 Q ss_pred -cccCCC--------CCCCCCCCCCCC Q lcl|Aclame:pro 375 -APENTN--------KKTTGQSNEPVP 392 (392) Q Consensus 375 -~~~~~~--------~~~~gd~~~p~p 392 (392) ..-|+- ..++|+.+.-.. T Consensus 396 ~~~~n~~~~d~~~~~~~k~g~~~~~~~ 422 (429) T protein:vir:10 396 LVNGNMLPIDMAGQAYLKGGDTNGEVS 422 (429) T ss_pred eecccccchhhccccccCCCCCCCCCC Confidence 111111 124454444444 No 31 >protein:vir:4454 Length: 414 # NCBI annotation: Portal Protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700377;genbank:gi:23505449;genbank:GeneID:955656 Probab=100.00 E-value=7.7e-80 Score=454.30 Aligned_cols=377 Identities=16% Similarity=0.222 Sum_probs=300.1 Q ss_pred chhhhh-hcccccccccccccccccCcchhhhh-hhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh- Q lcl|Aclame:pro 3 LPILNF-INQTNDPPEAGSVQSYFPDGNDAQIM-ESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN- 79 (392) Q Consensus 3 Mg~~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~- 79 (392) ||||++ |+++...+.. ... .....+ ......++..|++++++++++|++||++||++||++|++++++.. T Consensus 1 Mg~f~~lf~r~~~~~~~-~~~------~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~Ia~~ia~~p~~~~~~~~~ 73 (414) T protein:vir:44 1 MVFFSGLFQRKSDAPVT-TPA------ELADAIGLSYDTYTGKQISSQRAMRLTAVFSCVRVLAESVGMLPCNLYHLNGS 73 (414) T ss_pred CchhhhhhccCccCccc-chh------hHhHhhccCccccCCceechhhhhccHHHHHHHHHHHHHhccCceEEEEecCC Confidence 999975 4444332211 111 111111 122344677899999999999999999999999999999987442 Q ss_pred -----------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEE Q lcl|Aclame:pro 80 -----------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNIT 148 (392) Q Consensus 80 -----------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~ 148 (392) +.++.+||++||+++||+.++.+++++||||+++.|+ .|++++|+|++|+.|++..+.++... |.+. T Consensus 74 ~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gna~~~i~~~-~g~~~~L~~l~~~~v~~~~~~~~~~~-y~~~ 151 (414) T protein:vir:44 74 LKQRATGERLHKLISTHPNGYMTPQEFWELVVTCLCLRGNFYAYKVKA-FGEVAELLPVDPGCVVPKLNSSWEPV-YQVT 151 (414) T ss_pred ceeecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCceEEEEECCCCcEE-EEEE Confidence 2356799999999999999999999999999999887 69999999999999999988665544 4444 Q ss_pred ecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH--HH Q lcl|Aclame:pro 149 FDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD--KD 226 (392) Q Consensus 149 ~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~--~~ 226 (392) ..+ +....+++++|||+++++.++ .+|+||+..+...+..+.+++++..++|+||++|++++++++...+++ +. T Consensus 152 ~~~---g~~~~~~~~evih~~~~~~d~-~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~ 227 (414) T protein:vir:44 152 FPD---GSTDVLSQEDIWHVRTLTLDG-LVGLNPIAYAREAISLAAATEEHGARLFSNGAVTSGVLRTEQTLSDQAYERL 227 (414) T ss_pred ecC---ceEEEEccccEEEecCCCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCHHHHHHH Confidence 332 456789999999999887766 689999999999999999999999999999999999999998766554 33 Q ss_pred HHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc-cch-HHHHHHHHH Q lcl|Aclame:pro 227 KASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-QSS-IQQISGMYA 304 (392) Q Consensus 227 ~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-~~~-~~~~~~~~~ 304 (392) ++++.+.+.+.+|+|+++++++|++|++++.+++|+||+|.+++++++||++|||||++||+.+++ +++ +++...|++ T Consensus 228 ~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~~~~~t~~n~e~~~~~~~~ 307 (414) T protein:vir:44 228 KKDFEERHTGLGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRATFNNIEELGLGFIN 307 (414) T ss_pred HHHHHHHhcCccccCcceecCCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHH Confidence 556778888889999999999999999999999999999999999999999999999999986543 344 456789999 Q ss_pred HHHHHHHHHHHHHHHHHhhh-------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccccc-c Q lcl|Aclame:pro 305 SALNRYLRPAISELEYKLSD-------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPA-P 376 (392) Q Consensus 305 ~~l~p~l~~i~~~l~~~l~~-------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~-~ 376 (392) ++|.|+++.|+++|+++|++ +++||...+++.|.+++++.+++++++|++|+||+|++++..+++..|... . T Consensus 308 ~~l~P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~~~~~ 387 (414) T protein:vir:44 308 YSLVPYLTRIEQRINTGLVRKSKQGVFYAKFNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPGGDVYLTP 387 (414) T ss_pred HHHHHHHHHHHHHHHhhcCCccccCceEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeccc Confidence 99999999999999999964 368999999999999999999999999999999999987544443222211 1 Q ss_pred cCCCCC-----C----CCCCCCCCC Q lcl|Aclame:pro 377 ENTNKK-----T----TGQSNEPVP 392 (392) Q Consensus 377 ~~~~~~-----~----~gd~~~p~p 392 (392) -+.... + +.++++.-| T Consensus 388 ~n~~~~~~~~~~~~~~~~~~~~d~~ 412 (414) T protein:vir:44 388 MNMTTKPSDGSKAGKQKDNANADET 412 (414) T ss_pred ccccccCCccccCCCCCCCCCCCCC Confidence 111111 1 111111222 No 32 >protein:vir:4337 Length: 434 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061500;genbank:gi:9635589;genbank:GeneID:1262858 Probab=100.00 E-value=7.4e-80 Score=454.40 Aligned_cols=386 Identities=16% Similarity=0.184 Sum_probs=308.1 Q ss_pred Ccchhhhhhccccccccc--ccccccccCcchhhhhhhccCC---CCcccchhhhhcchHHHHHHHHHHHhhhhCceeee Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEA--GSVQSYFPDGNDAQIMESLLGD---NNEWVSARAALRNSDLFSIILQLSSDLAIVKINAE 75 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~ 75 (392) |.=-|.+.+.+....+.. ..+........+..+|..+.+. +++.|+.++||++++|++||++||++||+||++++ T Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~v~~~~al~~~~V~~~i~~ia~~ia~lp~~~~ 80 (434) T protein:vir:43 1 MSKSLGKVLSSATSAPRSSLFGWGGKTIRLTDGAFWSQFLGRESSSGKKVTVDKAMKLSAVWACVRLISTSVAGLPLGVY 80 (434) T ss_pred CccchhhhhhhcccccchhhhcccccccccCchHHHHHHhcCCccCCceechhhhhccHHHHHHHHHHHHhhhhCceEEE Confidence 666666655544333322 1222333444555666655443 56789999999999999999999999999999998 Q ss_pred cchh-------------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCce Q lcl|Aclame:pro 76 KKKN-------------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENG 142 (392) Q Consensus 76 ~~~~-------------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~ 142 (392) +++. ..++.+||++||+++||+.++.+++++||+|+++.++ +|++++|+|++|+.|++..+.++.. T Consensus 81 ~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~~~-~G~~~~L~~l~p~~v~~~~~~~g~~ 159 (434) T protein:vir:43 81 ERKADGSRVDARSFPLYDVVHNSPNDDMTAFQFWQAMVASMLLWGNAYAEIRRA-AGRPAALDFLLPSRVDLECDENGRL 159 (434) T ss_pred EEcCCCccccccccHHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCcceEEEEcCCCeE Confidence 7542 2345799999999999999999999999999999876 7999999999999999998876554 Q ss_pred EEEEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCc Q lcl|Aclame:pro 143 MYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLL 222 (392) Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~ 222 (392) .| +++.. .+..+.+++++|||+++++.++ .+|+||+..++..+..+.+++++..++|+||++|+|++++++..++ T Consensus 160 ~y-~~~~~---~g~~~~~~~~eVih~~~~~~dg-~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~ 234 (434) T protein:vir:43 160 KY-FYTTK---KGARREIERTNMLHIPAFTLDG-RIGLSAIRYGVDVFGSVMSAEDAANGTFKNGLLPTVAFKVDRILQP 234 (434) T ss_pred EE-EEEec---CceEEEEccccEEEecCcCCCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEecCCCCCH Confidence 44 33332 2456899999999999987766 6899999999999999999999999999999999999999987665 Q ss_pred hH-HHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccccc---ch-HH Q lcl|Aclame:pro 223 SD-KDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ---SS-IQ 297 (392) Q Consensus 223 ~~-~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~---~~-~~ 297 (392) ++ +..+++.+.+.+..|+|++++|++|++|++++.++.|+||+|++++++++||++|||||++||..+.++ ++ .+ T Consensus 235 e~~~~~r~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~s~~e~ 314 (434) T protein:vir:43 235 AQREEFREYVKSVSGAMNSGRSPVLEQGITPETIGINPVDAQLLETREHGVIEICRWFGVPPWMIGQTDKGSNWGTGLEQ 314 (434) T ss_pred HHHHHHHHHHHHhcCccccCCccccCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCccccchHHH Confidence 54 233455567788899999999999999999999999999999999999999999999999999765432 33 45 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCC Q lcl|Aclame:pro 298 QISGMYASALNRYLRPAISELEYKLSD-------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIP 370 (392) Q Consensus 298 ~~~~~~~~~l~p~l~~i~~~l~~~l~~-------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~ 370 (392) +...|+++||.|++..|+++|+++|++ +++||.+.+++.|.+++++.+.+++++|++|+||+|++++..+++. T Consensus 315 ~~~~f~~~~L~P~~~~ie~~ln~kL~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~p~~g 394 (434) T protein:vir:43 315 QMLAFLTFSISSITNQIQQCVNKRLLTAPERIRYYAEFSLEGFLKADSAGRAAWYSTMAQNGFMTRNEGRRKENLPELPG 394 (434) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhhhcCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Confidence 678899999999999999999999963 4789999999999999999999999999999999999885555433 Q ss_pred ccccc-ccCCCCCCC---------------CCCCCCCC Q lcl|Aclame:pro 371 KDLPA-PENTNKKTT---------------GQSNEPVP 392 (392) Q Consensus 371 ~e~~~-~~~~~~~~~---------------gd~~~p~p 392 (392) .|... .-|..|+.. -+.++|-| T Consensus 395 gD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (434) T protein:vir:43 395 GDILTVQSNLVPIDQLGQSNKSQAVRAALMNWFSQPEP 432 (434) T ss_pred CCeEeeccCccchhhhhccCCCcchhhhhhccCCCCCC Confidence 22221 112222211 12333444 No 33 >protein:vir:5737 Length: 419 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892048;genbank:gi:33770511;goa:Q7Y412;interpro:IPR006427;interpro:IPR006944;uniprot:Q7Y412;genbank:GeneID:1732929;interpro:IPR010994 Probab=100.00 E-value=4.9e-80 Score=455.37 Aligned_cols=375 Identities=17% Similarity=0.144 Sum_probs=302.3 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) |+|++||+++....... +.. ....+....+.++..+++++||++++|++||++||++||+||++++++.. T Consensus 1 m~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~g~ 73 (419) T protein:vir:57 1 MFIPQFWKGRPSENRVN-WQV------VPGGMRSSSSQAGVIITPETALALSAVRACVTLLAESVAQLPCVLYRRTENGG 73 (419) T ss_pred CcchhhhccCCcccccc-ccc------cccccccccccCCceechHHhhccHHHHHHHHHHHHhhccCceEEEEEcCCCc Confidence 99999998864432111 111 11122234455678899999999999999999999999999999987432 Q ss_pred ----------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEe Q lcl|Aclame:pro 80 ----------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITF 149 (392) Q Consensus 80 ----------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~ 149 (392) ..++.+||++||+++||+.++.+|+++||+|++|+|+.+|++++|+|++|+.|++..+.++. +++.+. T Consensus 74 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~pl~~~~v~v~~~~~g~-~~y~~~- 151 (419) T protein:vir:57 74 REIAFDHPLHDLIRYQPNRKDTAFEYHEQTQGVLGLEGNSYSLIDRNGRGDITELIPINPHKVIVLKGPDGM-PYYDIP- 151 (419) T ss_pred eeccccchHHHHHhhccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCcceEEEECCCce-EEEEEc- Confidence 22457899999999999999999999999999999999999999999999999998876643 433332 Q ss_pred cCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCC----Cch-- Q lcl|Aclame:pro 150 DDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGG----LLS-- 223 (392) Q Consensus 150 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~----~~~-- 223 (392) . . ...++.++|+|+++++.++ .+|+||+..+...+..+.++++++.++|+||++|+++++++... .++ T Consensus 152 -~--~--~~~~~~~~vih~r~~~~d~-~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~e~~ 225 (419) T protein:vir:57 152 -S--I--GEILPMRMVHHIKSFSLDG-YIGTSPIQTNPDVLGLGIAVEQHAAQVFARGTTMSGVIERPFEAKAIASQAAV 225 (419) T ss_pred -C--C--ceEEchhhEEEecCcCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEecCcCCcccCHHHH Confidence 1 1 2468999999999987766 68999999999999999999999999999999999999986532 222 Q ss_pred HHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc-cch-HHHHHH Q lcl|Aclame:pro 224 DKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-QSS-IQQISG 301 (392) Q Consensus 224 ~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-~~~-~~~~~~ 301 (392) ++.++.+.+.+.|..|+|+++++++|++|++++.+++|+||+|++++++++||++|||||.+||+.+.+ +++ +++... T Consensus 226 ~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~ 305 (419) T protein:vir:57 226 DAILAKWTERYGGVRNAFSVGMLQEGMTYKQLSQDNEKAQLLQSRQYTVNEVCRLYKVPPHMIQDLQKSTNNNIEHQGLQ 305 (419) T ss_pred HHHHHHHHHHhccccccccceecCCCceEEEcCCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCccccHHHHHHH Confidence 244567778888889999999999999999999999999999999999999999999999999975443 344 567889 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccc- Q lcl|Aclame:pro 302 MYASALNRYLRPAISELEYKLSD-------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDL- 373 (392) Q Consensus 302 ~~~~~l~p~l~~i~~~l~~~l~~-------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~- 373 (392) |++++|.|++..|+++|+++|++ +++||.+.+++.|.+++++.+..++++|++|+||+|++++..+++..|. T Consensus 306 f~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~ 385 (419) T protein:vir:57 306 YVIYTMLAILKRHESAMMRDLLLPSERRDFYIEFNVSSLLRGDQKSRYESYALGRQWGWLSVNDIRRMENLTPIPGGDKY 385 (419) T ss_pred HHHHHHHHHHHHHHHHHHhhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCee Confidence 99999999999999999999864 4789999999999999999999999999999999999885555543222 Q ss_pred ccccCCCCCCC-CCCCCCCC Q lcl|Aclame:pro 374 PAPENTNKKTT-GQSNEPVP 392 (392) Q Consensus 374 ~~~~~~~~~~~-gd~~~p~p 392 (392) ...-|..+... .+.+++.| T Consensus 386 ~~~~n~~~~~~~~~~~~~~~ 405 (419) T protein:vir:57 386 LTPLNMVDSKALTGIGKATP 405 (419) T ss_pred eeccccccccccccccCCCc Confidence 22222222211 22233444 No 34 >protein:vir:1082 Length: 359 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076736;genbank:gi:13095846;genbank:GeneID:920394 Probab=100.00 E-value=5.2e-80 Score=455.23 Aligned_cols=353 Identities=29% Similarity=0.441 Sum_probs=299.3 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchhhhh Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKNQGI 82 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~ 82 (392) |||||.|+++.... +...............+..|++++||++++|++||++||++||++|+. ..+..+.+ T Consensus 1 M~~~~~f~~r~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~al~~~av~~cv~~ia~~ia~~p~~-~~~~~~~L 70 (359) T protein:vir:10 1 MSILNPFERRSSIT---------PNNYYPFMVQNGSIVPNSLVDATEALKNSDLYAVTSLISSDIAGTRFI-GNQVFTSV 70 (359) T ss_pred CcccchhhccccCC---------CCcchhhhhccccccCCcccCHHHhhcchHHHHHHHHHHHhhhcCccc-cchHHHHH Confidence 99999887653321 111111222233344677899999999999999999999999999994 45667788 Q ss_pred cccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCcceeeEEEec Q lcl|Aclame:pro 83 IDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQAPQ 162 (392) Q Consensus 83 ~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (392) +.+||++||+++||+.++.+++++||+|++++|+.+|++.+++|++|+.|++..+.+ .++|.++... .+....+++ T Consensus 71 ~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~g~~~~l~~l~~~~v~i~~~~~--~~~y~~~~~~--~~~~~~~~~ 146 (359) T protein:vir:10 71 LNNPSHLTNAFSFWQTAILNLLLNGNVFLAILKGDNSLMKELRLIPSNAITIDLTDD--TLTYEVNQFD--DYPSAKYNA 146 (359) T ss_pred hhcccccCCHHHHHHHHHHhccccCceEEEEEECCCCeEEEEEEeCCceEEEEEcCC--eEEEEEEecC--CceEEEEcc Confidence 999999999999999999999999999999999999999999999999999977643 3444443322 345678999 Q ss_pred ceEEEecCCCc----cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCC-CchHH-HHHHHHHHHhc Q lcl|Aclame:pro 163 SDLIHMKLLSI----DGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGG-LLSDK-DKASRSRSFMK 236 (392) Q Consensus 163 ~~vih~~~~~~----~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~-~~~~~-~~~~~~~~~~~ 236 (392) +||||+++++. .+..+|+||+..++..+....+++++..++|+||++|+|+++++++. ++++. ..++..+.+.+ T Consensus 147 ~evih~~~~~~~~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l~~e~~~~~~~~~~~~~~ 226 (359) T protein:vir:10 147 SEMIHVKIMAYGVDTLHNLVGHSPLESLTSEIGQQKEANRLSLSTLKGALNPTSVVKVPQGTLSSEAKDSIRKEFEKANG 226 (359) T ss_pred cceEEeccCCCCCCccCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHHHHHhC Confidence 99999997653 24568999999999999999999999999999999999999998753 33332 22333345566 Q ss_pred cccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 237 RSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAIS 316 (392) Q Consensus 237 ~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p~l~~i~~ 316 (392) ..|+|+++||++|++|++++.+++|+||+|.+++++++||++|||||++||+.++.+++.++.++++.+++.|++.+|++ T Consensus 227 ~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~e~~~~~~l~~~l~p~~~ 306 (359) T protein:vir:10 227 GNNSGRVMVLDQSADFSTVSINADVANYLNSMNWGRTQIAKAFGVSDSYLNGTGDQQSSLDQIKDLYVNALNRFIEPLIS 306 (359) T ss_pred ccccCCceecCCCcceeeecCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCcccccHHHHHHHHHHHHHHHHHHHHH Confidence 78999999999999999999999999999999999999999999999999987777778889999999999999999999 Q ss_pred HHHHHhhhhhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCC Q lcl|Aclame:pro 317 ELEYKLSDHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYI 369 (392) Q Consensus 317 ~l~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~ 369 (392) +|+.+|++.+++|....++.|...+...+.+++++|++|+||+|++++..|++ T Consensus 307 ~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~t~NE~R~~l~~~pv~ 359 (359) T protein:vir:10 307 ELRIKCDSSIGVDMSPITDYSNSVFKADILNWVKEGIIEPTEAKTLLESKGII 359 (359) T ss_pred HHHHHhhhhhcccchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC Confidence 99999999999999988888888888999999999999999999999878777 No 35 >protein:vir:4509 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599035;genbank:gi:19548993;genbank:GeneID:935206 Probab=100.00 E-value=2.8e-79 Score=451.28 Aligned_cols=377 Identities=15% Similarity=0.156 Sum_probs=295.6 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh- Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN- 79 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~- 79 (392) -.|-|.++|+++.....+..... ..+.......++..|+.++||++++|++||++||++||+||++++++.. T Consensus 15 ~~~~~~~lf~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~vs~~~al~~~~v~~cv~~Ia~~iA~lp~~v~~~~~~ 87 (424) T protein:vir:45 15 GRVLLDALFRSKSLENPSTPITG-------DAVDTDGLFRADVYVSPETAMKLAAVYSCIYVLSSSLAQMPLHVMRRHKG 87 (424) T ss_pred hhHHHHhhccccCCCCCccccch-------hhhhhhccccCCceechHHhhccHHHHHHHHHHHHHHhhCceEEEEecCC Confidence 33444445555432221111111 1111111233567899999999999999999999999999999987432 Q ss_pred -----------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEE Q lcl|Aclame:pro 80 -----------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNIT 148 (392) Q Consensus 80 -----------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~ 148 (392) +.++.+||++||+++||+.++.+|+++||+|+++.|+..|++++|+|++|+.|++..+ ++.+.|.+. T Consensus 88 ~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~i~~~--~~~~~y~~~ 165 (424) T protein:vir:45 88 KVEPARDHPAFYLVHDEPNTWQTSYKWRELKQRHILGWGNGYTWVKRNRRGEVISLDCCMPWETTLMNT--GGRYTYGLY 165 (424) T ss_pred ceeecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEecCceEEEEEc--CCeEEEEEE Confidence 2345799999999999999999999999999999999999999999999999998754 344544444 Q ss_pred ecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH--HH Q lcl|Aclame:pro 149 FDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD--KD 226 (392) Q Consensus 149 ~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~--~~ 226 (392) ... ....+++++|||+|+++.++ .+|+||+..+++.|..+.++++++.++|+||++|++++++++..++++ +. T Consensus 166 ~~~----~~~~~~~~eVih~r~~~~d~-~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~ 240 (424) T protein:vir:45 166 NEY----GAFAISPDDMIHIRALGNNQ-KMGLSPIMQHAETIGMGMSGQKYTESFFSGNARPAGIVSVKSGLNKESWGWL 240 (424) T ss_pred ecC----ceEEECcccEEEecCcCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHHHHHH Confidence 322 24679999999999988765 579999999999999999999999999999999999999998766554 23 Q ss_pred HHHHHHHHhcc-ccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccccc-ch-HHHHHHHH Q lcl|Aclame:pro 227 KASRSRSFMKR-SRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ-SS-IQQISGMY 303 (392) Q Consensus 227 ~~~~~~~~~~~-~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~-~~-~~~~~~~~ 303 (392) ++.+.+.+.+. +|+|+++++++|++|++++.+++|+||+|++++++++||++|||||++||+.++++ ++ +++..+|+ T Consensus 241 ~~~~~~~~~g~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~eq~~~~f~ 320 (424) T protein:vir:45 241 KDQWQKASQALRRQENKTMLLPADLDYKALTVSPVDAQIIDMMKLNRSMIAGIFNIPAHMINDLEKATFSNISAQAIQFV 320 (424) T ss_pred HHHHHHHhccccccCCceeEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHH Confidence 45566677664 68999999999999999999999999999999999999999999999999765433 44 46678999 Q ss_pred HHHHHHHHHHHHHHHHHHhhh--------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccccc Q lcl|Aclame:pro 304 ASALNRYLRPAISELEYKLSD--------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPA 375 (392) Q Consensus 304 ~~~l~p~l~~i~~~l~~~l~~--------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~ 375 (392) +++|.|++++|+++|+++|++ +++||.+.+++.|.+++++.+.+++++|++|+||+|++++..+++..|.. T Consensus 321 ~~tL~P~~~~ie~~ln~kLl~~~e~~~g~~i~fd~~~llr~d~~~r~~~~~~~~~~g~~T~NE~R~~~gl~pi~ggD~~- 399 (424) T protein:vir:45 321 RYTMMPWVTNWEQELNRRLFTRAELAAGYYVRFNLTGLLRGTPQERAQFYHFAITDGWMSRNEARAFEDMNPVEGLDEM- 399 (424) T ss_pred HHHHHHHHHHHHHHHHHhcCChhhhcCCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCccee- Confidence 999999999999999999964 37899999999999999999999999999999999998754444322211 Q ss_pred ccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 376 PENTNKKTTGQSNEPVP 392 (392) Q Consensus 376 ~~~~~~~~~gd~~~p~p 392 (392) ...++..+..+.++|.| T Consensus 400 ~~~~n~~~~~~~~~~~~ 416 (424) T protein:vir:45 400 LVSVNAANPAGDFKPPK 416 (424) T ss_pred eecccccccccccCCCC Confidence 11122222111222222 No 36 >protein:vir:1884 Length: 424 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037664;genbank:gi:9634122;genbank:GeneID:1262519 Probab=100.00 E-value=4.8e-79 Score=449.95 Aligned_cols=377 Identities=14% Similarity=0.138 Sum_probs=295.2 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh- Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN- 79 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~- 79 (392) |.-.|.+||....... ....+... + +.+....++..|++++||++++|++||++||++||+||+++++++. T Consensus 16 ~~~~~~~~~~~~~~~~--~~~~~~~~-----~-~~~~~~~~~~~v~~~~al~~~~v~~cv~~Ia~~iA~lp~~~~~~~~~ 87 (424) T protein:vir:18 16 WWARLQSWFVGGRLVT--PNQGSQTG-----P-VSAHGHLGDSSINDERILQISTVWRCVSLISTLTACLPLDVFETDQN 87 (424) T ss_pred hHHHHHhhhccccccc--cccccccc-----c-cccccccccccccHHHhhccHHHHHHHHHHHHhhccCceEEEEeecC Confidence 3333344453322111 11111110 0 1111233566799999999999999999999999999999986432 Q ss_pred -------------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEE Q lcl|Aclame:pro 80 -------------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYN 146 (392) Q Consensus 80 -------------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~ 146 (392) ..++.+||++||+++||+.++.+|+++||+|++++|+.+|++++|+|++|+.|++..+ ++.++|. T Consensus 88 ~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~pl~~~~V~v~~~--~~~~~y~ 165 (424) T protein:vir:18 88 DNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVISLLPLQSANMDVKLV--GKKVVYR 165 (424) T ss_pred CceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCcceEEEEc--CCeEEEE Confidence 2245789999999999999999999999999999999999999999999999998765 4556655 Q ss_pred EEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCC-CchHH Q lcl|Aclame:pro 147 ITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGG-LLSDK 225 (392) Q Consensus 147 ~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~-~~~~~ 225 (392) +..+ ++.+.+++++|||+|+++.++ .+|+||+..++..+..+.+++++..++|+||++|++++++++.. .++++ T Consensus 166 ~~~~----g~~~~~~~~eIih~r~~~~dg-~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~~l~~e~~ 240 (424) T protein:vir:18 166 YQRD----SEYADFSQKEIFHLKGFGFTG-LVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGEKVLTEQQR 240 (424) T ss_pred EEeC----CeEEEeccccEEEecCcCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCCcCCCHHHH Confidence 5543 356789999999999988776 57999999999999999999999999999999999999998754 33332 Q ss_pred -HHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccccc---ch-HHHHH Q lcl|Aclame:pro 226 -DKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ---SS-IQQIS 300 (392) Q Consensus 226 -~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~---~~-~~~~~ 300 (392) ..++..+...+..|+|++++|++|++|++++++++|+||+|++++++++||++|||||++||..+.++ ++ +++.. T Consensus 241 ~~~~~~~~~~~~g~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~eq~~~ 320 (424) T protein:vir:18 241 SQVEENFKEIAGGPVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIEQQNL 320 (424) T ss_pred HHHHHHHHHHhCCcccCCceeccCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccccHHHHHH Confidence 22333445556678999999999999999999999999999999999999999999999999765433 33 45678 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh-------hccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccc Q lcl|Aclame:pro 301 GMYASALNRYLRPAISELEYKLSDH-------ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDL 373 (392) Q Consensus 301 ~~~~~~l~p~l~~i~~~l~~~l~~~-------~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~ 373 (392) +|++.||.|+++.|+++|+++|++. ++||.+.+++.|.+++++.+.+++++|++|+||+|++++..+++..|. T Consensus 321 ~f~~~tl~P~~~~ie~~l~~~L~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~gGD~ 400 (424) T protein:vir:18 321 GFLQYTLQPYISRWENSIQRWLIPAKDVGRIHAEHNLDGLLRGDSASRAAFMKAMGEAGLRTINEMRRTDNLPPLPGGDV 400 (424) T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCe Confidence 9999999999999999999999743 789999999999999999999999999999999999875554432222 Q ss_pred c-cccCCCCCC-CCCCCCCCC Q lcl|Aclame:pro 374 P-APENTNKKT-TGQSNEPVP 392 (392) Q Consensus 374 ~-~~~~~~~~~-~gd~~~p~p 392 (392) . ..-++.|+. .|...+|.. T Consensus 401 ~~~~~n~~~l~~~~~~~~p~~ 421 (424) T protein:vir:18 401 AMRQSQYVPITDLGTNKEPRN 421 (424) T ss_pred eeeccCccchHhhhccCCCcc Confidence 1 122233332 244444444 No 37 >protein:vir:102118 Length: 409 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699943;genbank:gi:110804051;genbank:GeneID:4206661 Probab=100.00 E-value=8.3e-79 Score=448.64 Aligned_cols=371 Identities=18% Similarity=0.170 Sum_probs=300.4 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhcc-CCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh-- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLL-GDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN-- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~-- 79 (392) |-|...|+++....+ ..+..+..++. +.++..++.++||++++|++||++||++||+||+++++++. T Consensus 1 m~f~~~~~~~~~~~~----------~~~~~~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~ 70 (409) T protein:vir:10 1 MLFRKGFKNQSQEIS----------IDDKKILEWLGINPSETYVNGKSCLKQATVFGCIRILSDNISKLPIKIYQKKDGI 70 (409) T ss_pred CcccccccCcCCCCC----------CChHHHHHHhcCCcCcceechhhhhccHHHHHHHHHHHHhhhhCceEEEEecCCe Confidence 666666665433221 12223333332 33567889999999999999999999999999999986532 Q ss_pred ---------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCc-----eEEE Q lcl|Aclame:pro 80 ---------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYEN-----GMYY 145 (392) Q Consensus 80 ---------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~-----~~~~ 145 (392) ..++.+||++||+++||+.++.+++++||||++++|+.+|++++|+|++|++|++..+.++. .+++ T Consensus 71 ~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~V~v~~~~~~~~~~~~~~~y 150 (409) T protein:vir:10 71 KRVPDHYLEYLLKLRPNPYMSSSDFWKCIEVQRNIYGNAYVALDFKKNGEIKGLYPLKSDGMKIFVDDTGLLNSENNVWY 150 (409) T ss_pred eeccCchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCCceEEEEcCCccccccceEEE Confidence 22457999999999999999999999999999999999999999999999999999876542 2233 Q ss_pred EEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH- Q lcl|Aclame:pro 146 NITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD- 224 (392) Q Consensus 146 ~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~- 224 (392) .++. ..+..+.+++++|||+|++++++ .+|+||+..+...+....++++++.++|+||++|++++++++..++++ T Consensus 151 ~~~~---~~g~~~~~~~~evih~r~~~~d~-~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~e~~ 226 (409) T protein:vir:10 151 LYTD---DLGQRHKFMSDEILHFKGLTADG-LAGLSVIELLNHLIENGKSSETYLNNFFKNGLQVKGLVQYAGDLNPEAE 226 (409) T ss_pred EEEe---CCceeEEeccccEEEecCcCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHH Confidence 3332 23456789999999999988776 689999999999999999999999999999999999999998766554 Q ss_pred -HHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc-c-chHHHHHH Q lcl|Aclame:pro 225 -KDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-Q-SSIQQISG 301 (392) Q Consensus 225 -~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-~-~~~~~~~~ 301 (392) +.++.+.+.+.+..|+|+++++++|++|++++.++.|+|++|++++++++||++|||||.+||+.+++ + +..++..+ T Consensus 227 ~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~e~~~~~ 306 (409) T protein:vir:10 227 EVFKENFERMSSGLKNAHRIAMLPIGYKFEPISQKLVDAQFLENSQLTIRQIASVFGVKMHQLNDLDRATHSNITEQNRE 306 (409) T ss_pred HHHHHHHHHHhccccccCCceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCccccHHHHHHH Confidence 33456677788888999999999999999999999999999999999999999999999999975443 3 34567889 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh--------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccc Q lcl|Aclame:pro 302 MYASALNRYLRPAISELEYKLSD--------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDL 373 (392) Q Consensus 302 ~~~~~l~p~l~~i~~~l~~~l~~--------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~ 373 (392) |++++|.|+++.|+++|+++|+. +++||.+.+++.|.+++++.+.+++++|++|+||+|++++..+++..|. T Consensus 307 f~~~~l~P~~~~ie~~ln~kL~~~~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~lgl~p~~ggD~ 386 (409) T protein:vir:10 307 FYIDTLQSILNMYELEINYKLFLISEIKNGFYSKFNVDTILRADIKTRYESYKEAIQNGFKTPNEIRELEEDEPLEGGDV 386 (409) T ss_pred HHHHHHHHHHHHHHHHHHHhhcCchhccCCcEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCe Confidence 99999999999999999999863 4789999999999999999999999999999999999885555432222 Q ss_pred c-cccCCCCCC--------CCCC Q lcl|Aclame:pro 374 P-APENTNKKT--------TGQS 387 (392) Q Consensus 374 ~-~~~~~~~~~--------~gd~ 387 (392) + ..-|+.|+. ||+- T Consensus 387 ~~~~~n~~~~~~~~~~~~kgGe~ 409 (409) T protein:vir:10 387 LLINGNMIPVKMAGEQYSKGGEK 409 (409) T ss_pred eeeccCccchhhccccccccCCC Confidence 1 122222222 2222 No 38 >protein:vir:483 Length: 413 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543090;swissprot:trembl:q8w629;genbank:gi:18249902;uniprot:Q8W629;genbank:GeneID:929685 Probab=100.00 E-value=1.1e-78 Score=448.03 Aligned_cols=377 Identities=15% Similarity=0.240 Sum_probs=305.3 Q ss_pred chhhhhhcccccccccccccccccCcchhhhh-hhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh-- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIM-ESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN-- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~-- 79 (392) |.|.++|+++...+.... ......+ ..+.+.++..|+++.|+++|+|++||++||++||++|++++++.. T Consensus 1 ~~f~~~f~r~~~~~~~~~-------~~~~~~~~~~~~~~~g~~v~~~~~l~~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~ 73 (413) T protein:vir:48 1 MFFSGLFQRKSDAPVTTP-------AELAEAIGLSYDTYTGKRISSQRAMRLTAVYSCVRVLAESVGMLPCSLYKISGTL 73 (413) T ss_pred CccchhhccCccCCccch-------HHHHHhhhcCcccccCceechhhhhccHHHHHHHHHHHHhhhhCceEEEEecCCc Confidence 888888888654442211 1111111 122345677899999999999999999999999999999997542 Q ss_pred ----------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEe Q lcl|Aclame:pro 80 ----------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITF 149 (392) Q Consensus 80 ----------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~ 149 (392) ..++.+||++||+++||+.++.+++++||+|+++.|+ .|+|++|||++|++|++..+.++...| .+.. T Consensus 74 ~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~-~g~~~~L~~l~~~~v~~~~~~~~~~~y-~~~~ 151 (413) T protein:vir:48 74 KTRVVDERLHKLVSAKPNGYMTPQEFWELVIVCLCLRGNFYAYKVKA-LGEVVELLPIDPGCVEPKLNSQWQPVY-QVTF 151 (413) T ss_pred ceeecccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCceEEEEEeC-CCcEEEEEEEcCceEEEEEcCCceEEE-EEEe Confidence 2345789999999999999999999999999999986 689999999999999999887655443 3333 Q ss_pred cCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH--HHH Q lcl|Aclame:pro 150 DDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD--KDK 227 (392) Q Consensus 150 ~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~--~~~ 227 (392) .+ +....+++++|||+++++.++ .+|+||+..+...+..+.+++++..++|+||++|++++++++...+++ +.+ T Consensus 152 ~~---g~~~~~~~~evih~~~~~~d~-~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~~~~e~~~~~~ 227 (413) T protein:vir:48 152 PD---GSVDVLTQDEIWHVRTLTLDG-LVGLNPIAYAREAISLAAATEEHGARLFGNGAVTSGVLRTEQKLTPDAYERLK 227 (413) T ss_pred cC---ceEEEEccccEEEecCcCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHHHHHHHH Confidence 32 445689999999999987766 689999999999999999999999999999999999999998766553 445 Q ss_pred HHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc-cch-HHHHHHHHHH Q lcl|Aclame:pro 228 ASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-QSS-IQQISGMYAS 305 (392) Q Consensus 228 ~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-~~~-~~~~~~~~~~ 305 (392) +.+.+.+.+..|+|+++++++|++|++++.+++|+||+|.+++.+++||++|||||++||+.+++ +++ +++...|++. T Consensus 228 ~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~n~e~~~~~f~~~ 307 (413) T protein:vir:48 228 KDFEERHTGLGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRATFNNIEELGLGFINY 307 (413) T ss_pred HHHHHHhcCccccCcceecCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCCcccHHHHHHHHHHH Confidence 66777888889999999999999999999999999999999999999999999999999975443 234 5678899999 Q ss_pred HHHHHHHHHHHHHHHHhhh-------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccccc-cc Q lcl|Aclame:pro 306 ALNRYLRPAISELEYKLSD-------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPA-PE 377 (392) Q Consensus 306 ~l~p~l~~i~~~l~~~l~~-------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~-~~ 377 (392) +|.|++++|+++|+++|++ +++||.+.+++.|.+++++.+.+++++|++|+||+|++++..+++..|... .- T Consensus 308 ~i~P~~~~ie~~l~~~L~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~ggD~~~~~~ 387 (413) T protein:vir:48 308 SLVPYLTRIEQRINTGLVRESKQGKFYAKFNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPGGDVYLTPM 387 (413) T ss_pred HHHHHHHHHHHHHHhhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeccc Confidence 9999999999999999974 478999999999999999999999999999999999988655554323221 11 Q ss_pred CCCC-----------CCCCCCCCCCC Q lcl|Aclame:pro 378 NTNK-----------KTTGQSNEPVP 392 (392) Q Consensus 378 ~~~~-----------~~~gd~~~p~p 392 (392) |..+ ..+|++++..= T Consensus 388 n~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (413) T protein:vir:48 388 NMTTSPSAGDDNGKKKESGDADKTAS 413 (413) T ss_pred cccccccccccCCCCCCCCCccccCC Confidence 2222 22233333222 No 39 >protein:vir:189 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037699;genbank:gi:9634156;genbank:GeneID:1262529 Probab=100.00 E-value=1.5e-78 Score=447.21 Aligned_cols=379 Identities=14% Similarity=0.132 Sum_probs=295.0 Q ss_pred Cc--chhhhhhccccccccc--ccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeec Q lcl|Aclame:pro 1 MI--LPILNFINQTNDPPEA--GSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEK 76 (392) Q Consensus 1 m~--Mg~~n~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~ 76 (392) |+ =|+|+.|++-...... ......+.+ +.+....++..|++++|+++++|++||++||++||+||+++++ T Consensus 10 ~~~~~g~~~~~~~~f~~~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~al~~~~v~~cv~~Ia~~iA~lp~~vy~ 83 (424) T protein:vir:18 10 LRTNNGWWARLKSWFVGGRLVTPNQGSQTGP------VSAHGYLGDSSINDERILQISTVWRCVSLISTLTACLPLDVFE 83 (424) T ss_pred cCCCCchHHHHHhhccccccccccchhhccc------cccccccccccccHHHhhccHHHHHHHHHHHHhhccCceEEEE Confidence 11 1455444332211111 111111111 1111122456689999999999999999999999999999987 Q ss_pred chh--------------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCce Q lcl|Aclame:pro 77 KKN--------------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENG 142 (392) Q Consensus 77 ~~~--------------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~ 142 (392) ... ..++.+||++||+++||+.++.+++++||+|++++|+..|++++|+|++|+.|++..+ ++. T Consensus 84 ~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~--~~~ 161 (424) T protein:vir:18 84 TDQNDNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVISLLPLQSANMDVKLV--GKK 161 (424) T ss_pred eccCCceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCcceEEEEc--CCe Confidence 432 2345789999999999999999999999999999999999999999999999998765 455 Q ss_pred EEEEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCC-C Q lcl|Aclame:pro 143 MYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGG-L 221 (392) Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~-~ 221 (392) ++|.++.+ +..+.+++++|||+|+++.++ .+|+||+..++..|..+.+++++..++|+||++|+|++++++.. + T Consensus 162 ~~y~~~~~----g~~~~~~~~eVihir~~~~dg-~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l~ 236 (424) T protein:vir:18 162 VVYRYQRD----SEYADFSQKEIFHLKGFGFTG-LVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGEKVLT 236 (424) T ss_pred EEEEEEeC----CeEEEeccccEEEecCcCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCcCCC Confidence 55555543 456789999999999988766 67999999999999999999999999999999999999998764 3 Q ss_pred chHH-HHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccccc---ch-H Q lcl|Aclame:pro 222 LSDK-DKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ---SS-I 296 (392) Q Consensus 222 ~~~~-~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~---~~-~ 296 (392) ++++ ..++..+...+..|+|++++|++|++|+++++++.|+||+|++++++++||++|||||++||..+.++ ++ + T Consensus 237 ~e~~~~~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e 316 (424) T protein:vir:18 237 EQQRSQVEENFKEIAGGPVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIE 316 (424) T ss_pred HHHHHHHHHHHHHHhCCcccCCceeccCCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCCCcccccccHH Confidence 3332 22344445566678999999999999999999999999999999999999999999999999765433 33 4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCC Q lcl|Aclame:pro 297 QQISGMYASALNRYLRPAISELEYKLSD-------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYI 369 (392) Q Consensus 297 ~~~~~~~~~~l~p~l~~i~~~l~~~l~~-------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~ 369 (392) ++..+|++.||.|+++.|+++|+++|++ +++||.+.+++.|.+++++.++.++++|++|+||+|++++..+++ T Consensus 317 q~~~~f~~~tl~P~~~~ie~~ln~~L~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~ 396 (424) T protein:vir:18 317 QQNLGFLQYTLQPYISRWENSIQRWLIPSKDVGRLHAEHNLDGLLRGDSASRAAFMKAMGESGLRTINEMRRTDNMPPLP 396 (424) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC Confidence 5678999999999999999999999974 378999999999999999999999999999999999987555443 Q ss_pred Ccccc-cccCCCCCCC-CCCCCCCC Q lcl|Aclame:pro 370 PKDLP-APENTNKKTT-GQSNEPVP 392 (392) Q Consensus 370 ~~e~~-~~~~~~~~~~-gd~~~p~p 392 (392) ..|.. ..-++.|+.. |..++|.. T Consensus 397 ggD~~~~~~n~~~l~~~~~~~~~~~ 421 (424) T protein:vir:18 397 GGDVAMRQAQYVPITDLGTNKEPRN 421 (424) T ss_pred CcCeeeeccCccchhhhhccCCccc Confidence 32222 1223334332 33344333 No 40 >protein:vir:8418 Length: 409 # NCBI annotation: gp13 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID:1260067 Probab=100.00 E-value=4.4e-78 Score=444.67 Aligned_cols=378 Identities=15% Similarity=0.192 Sum_probs=294.1 Q ss_pred chhhhh-hcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh-- Q lcl|Aclame:pro 3 LPILNF-INQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN-- 79 (392) Q Consensus 3 Mg~~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~-- 79 (392) ||||++ |+++.............. . ....+..+..++.++||++++|++||++||++||++|+++++++. T Consensus 1 Mgl~~~~f~~~~~~~~~~~~~~~~~------~-~~~~~~~g~~v~~~~al~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~ 73 (409) T protein:vir:84 1 MSLFTRIFSGPSEERTLTKISGIPS------P-AEDWAMHGDRPGANSAMTLGAFYACVTLLADTVASLSIDAYRKKDNV 73 (409) T ss_pred CchhhhhhcCCCccccccccccccc------c-cchhhccCcccchhhhhccHHHHHHHHHHHHhhhhCceEEEEecCCc Confidence 999985 554433322222211110 0 111233566788999999999999999999999999999987532 Q ss_pred --------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEe-cccCCceeEEEEeccccceeeecCCCceEEEEEEec Q lcl|Aclame:pro 80 --------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRW-RNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFD 150 (392) Q Consensus 80 --------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~-r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~ 150 (392) +.++.+||++||+++||+.++.+++++||+|+++. ++..|+|++|+|++|+.|++....+....++.+.+. T Consensus 74 ~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~l~l~Gn~~~~i~~~~~~g~~~~L~~l~p~~v~v~~~~~~~~~~~~~~~~ 153 (409) T protein:vir:84 74 RIPVSPAPKLLESTPYPGLTWFDWLWMLMESLAVTGNAFGYISARDEANRPTAIMPIHPDCIHVTDAKDEDGDWIEPVYR 153 (409) T ss_pred ccccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEECCCCceEEEEEEcCceeEEEEcCCCcceEEEEEec Confidence 23567999999999999999999999999999986 688899999999999999998766555444444333 Q ss_pred CCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHH Q lcl|Aclame:pro 151 DPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASR 230 (392) Q Consensus 151 ~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~ 230 (392) .. + ..+++++|||++++++++..+|+||+..+...+..+.+++++..++|+||++|+|++++++..++++.+ +.+ T Consensus 154 ~~--g--~~~~~~dvih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~-~~~ 228 (409) T protein:vir:84 154 ID--G--KVVPNHRIMHIKRYPVAGCALGMSPIEKAASAIGLGLAAERYGLRWFRDSANPSGILSSDADLTPDQVK-QTQ 228 (409) T ss_pred CC--c--eEEchhhEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHH-HHH Confidence 22 2 468999999999999998889999999999999999999999999999999999999998876554422 222 Q ss_pred HHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccccc---ch-HHHHHHHHHHH Q lcl|Aclame:pro 231 SRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ---SS-IQQISGMYASA 306 (392) Q Consensus 231 ~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~---~~-~~~~~~~~~~~ 306 (392) .+...+..|+|++++|++|++|++++.++.|+||+|.+++++++||++|||||++||..+.++ ++ +++...|+++| T Consensus 229 ~~~~~~~~n~g~~~vl~~g~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~e~~~~~f~~~~ 308 (409) T protein:vir:84 229 KQWIQSHHNRRLPAVMSAGIKWQSVSITPNESQFLETRSFQRSEIAMWFRIPPHMIGDVEKSTSWGTGIEEQGINFVRHT 308 (409) T ss_pred HHHHHHhccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccchHHHHHHHHHHHH Confidence 222334467889999999999999999999999999999999999999999999999754432 34 45678999999 Q ss_pred HHHHHHHHHHHHHHHhhh--hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccccc-ccCCCCCC Q lcl|Aclame:pro 307 LNRYLRPAISELEYKLSD--HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPA-PENTNKKT 383 (392) Q Consensus 307 l~p~l~~i~~~l~~~l~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~-~~~~~~~~ 383 (392) |.|+++.|+++|+++|.+ +++||...+++.|.+++++.+..++++|++|+||+|++++..+++..|... .-|+.++. T Consensus 309 l~P~~~~ie~~l~~~L~~g~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~p~~ggD~~~~~~n~~~~~ 388 (409) T protein:vir:84 309 LLPWLRCIEQALDTFLPRGQFVKFNVDGLMRGDVTARFTAYQMGLQNGIWSVNEVRAWEDAPPIPEGDIHLQPMNFVPLG 388 (409) T ss_pred HHHHHHHHHHHHHHhccCCCeEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeecccccccc Confidence 999999999999999854 579999999999999999999999999999999999987544443222111 11222211 Q ss_pred CCCC----CCCCC Q lcl|Aclame:pro 384 TGQS----NEPVP 392 (392) Q Consensus 384 ~gd~----~~p~p 392 (392) .-+. .++-| T Consensus 389 ~~~~~~~~~~~~~ 401 (409) T protein:vir:84 389 YVPPEEPAQEPQP 401 (409) T ss_pred cCCccccCcCCCC Confidence 1111 11222 No 41 >protein:vir:1266 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690758;genbank:gi:22854998;genbank:GeneID:955213 Probab=100.00 E-value=3.3e-78 Score=445.37 Aligned_cols=378 Identities=17% Similarity=0.205 Sum_probs=303.1 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) |=|-++|+++........ . ........+....+.++..|+.++++++|+|++||++||++||+||++++++.. T Consensus 1 m~~~~~f~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~Ia~~ia~l~~~~~~~~~~~~ 76 (416) T protein:vir:12 1 MLLERMFEKRSGSSDHED---G-FNNILLNMFGGRKTASGERVSESNSLVQPDIFACVNVLSDDIAKLPIHTYKRTDGGI 76 (416) T ss_pred CccchhcccccCccccCc---c-chhHHHHhhcCcccccCceechhhhhccHHHHHHHHHHHHhhhhCceEEEEecCCcc Confidence 655566766543321111 1 111122223333344577899999999999999999999999999999987432 Q ss_pred ---------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEec Q lcl|Aclame:pro 80 ---------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFD 150 (392) Q Consensus 80 ---------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~ 150 (392) ..++.+||++||+++||+.++.+++++||||+++.|+..|++.+|+|++|++|++..+.+++.+++.+..+ T Consensus 77 ~~~~~~~l~~~l~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~~~~~~~ 156 (416) T protein:vir:12 77 ERKPEHKSAHAVYARPNPYMTAFTWKKLMMTHVLTWGNAYSYIQFGSHGYPEALFPLRPDYTNAYVHPTTGMLWYQTVLN 156 (416) T ss_pred ccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEeCCCcEEEEEEecC Confidence 23578999999999999999999999999999999999999999999999999999998888888777554 Q ss_pred CCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHH Q lcl|Aclame:pro 151 DPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASR 230 (392) Q Consensus 151 ~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~ 230 (392) +..+.+++++|||+++++.++ .+|+||+.+++..+..+.+++++..++|+||++|++++++++..++ +..+++ T Consensus 157 ----g~~~~~~~~eiih~~~~~~~~-~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~~~--e~~~~~ 229 (416) T protein:vir:12 157 ----GKAIELYDYEVLHFKGLSTDG-IHGKSPIGVVREHIGAQAAATKYNAKLYKNEATPRGILKVPAFLDE--KPKENV 229 (416) T ss_pred ----CeEEEecCccEEEecCcCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEecCCCCCH--HHHHHH Confidence 356789999999999887766 6899999999999999999999999999999999999999876543 344455 Q ss_pred HHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc-cch-HHHHHHHHHHHHH Q lcl|Aclame:pro 231 SRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-QSS-IQQISGMYASALN 308 (392) Q Consensus 231 ~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-~~~-~~~~~~~~~~~l~ 308 (392) .+.+.+..++|+++++++|++|++++++++|+|++|++++++++||++|||||++||+...+ +++ +++..+|++++|. T Consensus 230 ~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~~l~ 309 (416) T protein:vir:12 230 RKEWKRVNKVENIAIIDYGLEYQSISMPLQEAQFVESMKFNKAQISMIYKVPLHKLNELDKATFSNIEHQSIEYVRNTLQ 309 (416) T ss_pred HHHHHHHhcCCCeeecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCccCCCcccHHHHHHHHHHHHHH Confidence 56666677889999999999999999999999999999999999999999999999975433 344 4567899999999 Q ss_pred HHHHHHHHHHHHHhhh--------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccccc-ccCC Q lcl|Aclame:pro 309 RYLRPAISELEYKLSD--------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPA-PENT 379 (392) Q Consensus 309 p~l~~i~~~l~~~l~~--------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~-~~~~ 379 (392) |++.+|+++|+++|++ +++||.+.+++.|.+++++.+..++++|++|+||+|++++..+++..|.+. ..|+ T Consensus 310 P~~~~ie~~l~~~l~~~~~~~~g~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~Pi~ggd~~~~~~n~ 389 (416) T protein:vir:12 310 PWIVNFEQELNVKLFLDHDQKSGHYVKFNIDSELRGDSKTQAEYLKTLHETGVLNKDEIRELLERNPIENGDKYISSLNY 389 (416) T ss_pred HHHHHHHHHHHHhhcCchhhcCCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeecccc Confidence 9999999999999863 478999999999999999999999999999999999988555543222211 1111 Q ss_pred CC---------------CCCCCCCCCC Q lcl|Aclame:pro 380 NK---------------KTTGQSNEPV 391 (392) Q Consensus 380 ~~---------------~~~gd~~~p~ 391 (392) -+ ..||+.+.-= T Consensus 390 ~~~~~~~~~~~~~~~~~~~gge~~~~g 416 (416) T protein:vir:12 390 VFLDFLEEYQRLKAGGAMKGGDNKNEG 416 (416) T ss_pred ccccccchhhccccccccCCCCCcCCC Confidence 11 1122211111 No 42 >protein:vir:1431 Length: 419 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536360;genbank:gi:17975165;genbank:GeneID:929165 Probab=100.00 E-value=4.6e-78 Score=444.59 Aligned_cols=374 Identities=15% Similarity=0.141 Sum_probs=296.3 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) |- |.++....... .......+...+++...+.+++.|++++||++++|++||++||++||++|+++++++. T Consensus 1 ~~----~~r~~~~~~~~--~~~~~~~~~~~~~g~~~s~~~~~vt~~~al~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~~ 74 (419) T protein:vir:14 1 MF----FSRQLLSNLGQ--TQMSAGGWVSALLGSSRSDSGQVVTPASALALTVLQNCVTLLAESIAQLPIELYERSGEDR 74 (419) T ss_pred Cc----ccccccccccc--cccCcchhhHHhhcCCCccCCcccchHHhhccHHHHHHHHHHHHhhccCceEEEEecCCcc Confidence 42 22222211111 1111223344455555566788899999999999999999999999999999987543 Q ss_pred ---------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEec Q lcl|Aclame:pro 80 ---------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFD 150 (392) Q Consensus 80 ---------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~ 150 (392) ..++.+||++||+++||+.++.+++++||+|+++.|+.+|++++|||++|+.|++..+.++... +.++.. T Consensus 75 ~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~l~pl~~~~v~v~~~~~~~~~-y~~~~~ 153 (419) T protein:vir:14 75 KPATDHPLYSILKYEPNSWQTPFEYQEQSQVAVGLRGNSYSFIDRDSDGVIQGLYPLDNEAVTVMRGSDLKPV-YRVRGS 153 (419) T ss_pred ccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEECCCceEE-EEEccC Confidence 2345789999999999999999999999999999999999999999999999999887765433 333221 Q ss_pred CCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCC---ch---H Q lcl|Aclame:pro 151 DPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGL---LS---D 224 (392) Q Consensus 151 ~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~---~~---~ 224 (392) ..++.++|+|+++++.++ .+|+||+..++..+..+.+++++..++|+||++|+|++++++... .+ + T Consensus 154 -------~~~~~~~i~h~~~~~~dg-~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~ 225 (419) T protein:vir:14 154 -------DPMPQRLVHHVRWMSING-YTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPKDAPALKDQASVD 225 (419) T ss_pred -------cccchhheeEecCcCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEecCCCCcccCHHHHH Confidence 247899999999987766 689999999999999999999999999999999999999986542 12 2 Q ss_pred HHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc--cchHHHHHHH Q lcl|Aclame:pro 225 KDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ--QSSIQQISGM 302 (392) Q Consensus 225 ~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~--~~~~~~~~~~ 302 (392) +.++.+.+.+.+.+|+|+++++++|++|++++.++.|+||+|++++++++||++|||||++||..+++ ++.+++...| T Consensus 226 ~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~t~s~~E~~~~~f 305 (419) T protein:vir:14 226 RITDGWNAKFGGSGNAKKVALLQEGMTFRPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQF 305 (419) T ss_pred HHHHHHHHHhcCccccCCceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCCCCCCcccHHHHHHHH Confidence 34556777888999999999999999999999999999999999999999999999999999975433 2345678899 Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccccc Q lcl|Aclame:pro 303 YASALNRYLRPAISELEYKLSD-------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPA 375 (392) Q Consensus 303 ~~~~l~p~l~~i~~~l~~~l~~-------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~ 375 (392) ++++|.|+++.|+++|+++|++ +++||...+++.|.+++++.+.+++++|++|+||+|++++..+++..|... T Consensus 306 ~~~~L~P~~~~ie~~l~~kll~~~~~~~~~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~gGD~~~ 385 (419) T protein:vir:14 306 VIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYL 385 (419) T ss_pred HHHHHHHHHHHHHHHHhhhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeee Confidence 9999999999999999999864 378999999999999999999999999999999999987555544333221 Q ss_pred ccCCCCCC-------CCCCCCCCC Q lcl|Aclame:pro 376 PENTNKKT-------TGQSNEPVP 392 (392) Q Consensus 376 ~~~~~~~~-------~gd~~~p~p 392 (392) . .++..+ .++..+|.+ T Consensus 386 ~-~~n~~~~~~~~~~~~~~~~~~~ 408 (419) T protein:vir:14 386 S-PMNMVDASKPQQLPVGKSEPTK 408 (419) T ss_pred e-ccccccccccccccCCCCCCcc Confidence 1 111111 111222222 No 43 >protein:vir:80333 Length: 419 # NCBI annotation: gp4, phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111083;genbank:gi:134288632;genbank:GeneID:4960580 Probab=100.00 E-value=1.2e-77 Score=442.32 Aligned_cols=374 Identities=14% Similarity=0.132 Sum_probs=296.6 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) |.|..+..+.. .++ ......+...+++...+.++..|++++||++|+|++||++||++||+||+++++++. T Consensus 1 m~~~~~~~~~~-~~~-----~~~~~~~~~~~~g~~~s~~~~~v~~~~al~~~~v~~cv~~ia~~ia~lp~~~~~~~~~~~ 74 (419) T protein:vir:80 1 MFFSRQLLSNL-GQT-----QPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDR 74 (419) T ss_pred CCccccccccc-CcC-----CCCcchhhHHhhcccccccCcccChHHhhccHHHHHHHHHHHHhhccCceEEEEecCCCc Confidence 65543332221 111 111122333444444455788999999999999999999999999999999987543 Q ss_pred ---------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEec Q lcl|Aclame:pro 80 ---------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFD 150 (392) Q Consensus 80 ---------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~ 150 (392) ..++.+||++||+++||+.++.+++++||||+++.|+.+|++.+|||++|+.|++..+.++...| .+ . T Consensus 75 ~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~i~~~~v~i~~~~~~~~~y-~~--~ 151 (419) T protein:vir:80 75 KPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMY-RV--A 151 (419) T ss_pred ccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEECCCceEEE-EE--c Confidence 23457999999999999999999999999999999999999999999999999999887654333 22 2 Q ss_pred CCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCC---ch---H Q lcl|Aclame:pro 151 DPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGL---LS---D 224 (392) Q Consensus 151 ~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~---~~---~ 224 (392) + ...++.++|+|+++++.++ .+|+||+..++..|....+++++..++|+||++|++++++++... .+ + T Consensus 152 ~-----~~~~~~~~i~h~~~~~~d~-~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~ 225 (419) T protein:vir:80 152 G-----ADPLPQRLVHHVRWMSING-YTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVD 225 (419) T ss_pred C-----ccccchhheEEecCCCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCHHHHH Confidence 1 1358899999999987766 689999999999999999999999999999999999999876432 12 2 Q ss_pred HHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc--cchHHHHHHH Q lcl|Aclame:pro 225 KDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ--QSSIQQISGM 302 (392) Q Consensus 225 ~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~--~~~~~~~~~~ 302 (392) +.++.+.+.+.|..|+|+++++++|++|++++.++.|+|++|.+++++++||++|||||.+||+.+++ ++.+++...| T Consensus 226 ~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~s~~d~q~~e~~~~~~~~Ia~~fgVPp~llg~~~~~t~~n~e~~~~~f 305 (419) T protein:vir:80 226 RITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQF 305 (419) T ss_pred HHHHHHHHHhcCccccCCceecCCCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCCCCCCcccHHHHHHHH Confidence 33556777888999999999999999999999999999999999999999999999999999975443 2345678899 Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccccc Q lcl|Aclame:pro 303 YASALNRYLRPAISELEYKLSD-------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPA 375 (392) Q Consensus 303 ~~~~l~p~l~~i~~~l~~~l~~-------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~ 375 (392) ++++|.|++..|+++|+++|++ +++||.+.+++.|.+++++.+..++++|++|+||+|++++..+++..|... T Consensus 306 ~~~~l~P~~~~ie~~l~~kll~~~~~~~~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~gGD~~~ 385 (419) T protein:vir:80 306 VIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYL 385 (419) T ss_pred HHHHHHHHHHHHHHHHhhhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceee Confidence 9999999999999999999964 378999999999999999999999999999999999987555544322221 Q ss_pred ccCCCCCC-----CCCCCCCCC Q lcl|Aclame:pro 376 PENTNKKT-----TGQSNEPVP 392 (392) Q Consensus 376 ~~~~~~~~-----~gd~~~p~p 392 (392) . .++..+ ..+.+++-| T Consensus 386 ~-~~n~~~~~~~~~~~~~~~~~ 406 (419) T protein:vir:80 386 S-PMNMVDASKPQPIPMGKTEP 406 (419) T ss_pred e-ccccccccccccccCCCCCc Confidence 1 111111 112222333 No 44 >protein:vir:8317 Length: 409 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817885;genbank:gi:29566318;genbank:GeneID:1259513 Probab=100.00 E-value=1.4e-77 Score=441.89 Aligned_cols=364 Identities=14% Similarity=0.095 Sum_probs=286.4 Q ss_pred chhhhhhccccc---------------------------ccccccccccccCcchhhhhhhccCCCCcccchhhhhcchH Q lcl|Aclame:pro 3 LPILNFINQTND---------------------------PPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSD 55 (392) Q Consensus 3 Mg~~n~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 55 (392) ||||+-++.... .+.......+..........+.+...++..++.+.++++++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~t~~~~~~~~~ 80 (409) T protein:vir:83 1 MGFWSNLFGIPSIPDLPNDNGPVDYNPGDPDMVEFRGPEEEPEARALPWIRPTAWSGYPESWATPSWGSAQDKLRTLIDV 80 (409) T ss_pred CchhhhhcccccCCCcccccccccccCCCCceeeccCCCcchhhhhcccccccccccccccccccCccccchhhHhhhHH Confidence 999964443210 00000001111111111122233455677899999999999 Q ss_pred HHHHHHHHHHhhhhCceeeecch------hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEE-ecccCCceeEEEEec Q lcl|Aclame:pro 56 LFSIILQLSSDLAIVKINAEKKK------NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYR-WRNANGADMKWEYLR 128 (392) Q Consensus 56 v~~~i~~ia~~ia~lp~~~~~~~------~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i-~r~~~G~~~~l~~l~ 128 (392) |++||++||++||+||++++++. ...++.+||++||+++|++.++.+|++ ||+|+++ .|+.+|+|++|+||+ T Consensus 81 v~acV~~Ia~~iA~lpl~~~~~~~~~~~~~~ll~~~PN~~~t~~~f~~~l~~~lll-Gnay~~~i~r~~~G~~~~L~pl~ 159 (409) T protein:vir:83 81 AWACIDLNASVLSSMPIYRMRNGRIIDSVAWMSNPDPEVYTSWQEFAKQLFWDFQL-GEAFVLPMAHGSDGYPIRFRVVP 159 (409) T ss_pred HHHHHHHHHHhhccCceEEeeCCccccchhhhcccCCCCCCCHHHHHHHHHHHHhh-CCcEEEEEEECCCCcEEEEEEEC Confidence 99999999999999999998753 234578999999999999999999987 9999975 588999999999999 Q ss_pred cccceeeecCCCceEEEEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccC Q lcl|Aclame:pro 129 PSQVNTYYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSL 208 (392) Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~ 208 (392) |+.|++..+.++ .++|.+. . ....++|||+|++++.+..+|+||+..++..+....+++++..++|+||+ T Consensus 160 p~~v~v~~~~~g-~~~y~~~--~-------~~~~~eiiHir~~~~~~~~~G~spi~~~~~~i~~~~a~~~~~~~~f~nga 229 (409) T protein:vir:83 160 PWLVNVELKKGA-RREYRIG--G-------LNVTDEILHIRYQGNTADAHGHGPLESAAPRQVVIGLLQKYVQNLAETGG 229 (409) T ss_pred CcceEEEEcCCc-eEEEEEc--c-------ccCccceEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCC Confidence 999999888664 3333332 1 22458999999988777789999999999999999999999999999999 Q ss_pred CcceEEeeCCCCCchHHHH--HHHHHHHhccccCCceeeccCCceE-EeccCChhhHHHHHHHHHHHHHHHHHhcccHHH Q lcl|Aclame:pro 209 NVPGVLTVKGGGLLSDKDK--ASRSRSFMKRSRSGGPVVLDDLEEF-TALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSY 285 (392) Q Consensus 209 ~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~vl~~g~~~-~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~ 285 (392) +|+|++++++..++++.++ +++.. ...+|+|+++++++|+++ ++++++++|+||+|++++++++||++|||||++ T Consensus 230 ~p~gil~~~~~ls~e~~~~~~~~~~~--~~~~nag~~~il~~g~~~~~~~~~s~~d~q~le~r~~~~~eIa~~fgVPp~l 307 (409) T protein:vir:83 230 VPLYWLGVERRLSETEAVDLMDRWIE--SRSKYAGHPALVTGGATLNQAKSMSAQDLSLMELTQFNEARIAILLGVPPFL 307 (409) T ss_pred CcceEeecCCCCCHHHHHHHHHHHHH--hhCCccCccceecCCcccccccCCCHHHHHHHHHHHhhHHHHHHHhCCCHHH Confidence 9999999998777665433 33333 344588999999999987 568999999999999999999999999999999 Q ss_pred cCCcccc----cch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhccchhhhhhcChHHHHHHHHHHHhCCccCHH Q lcl|Aclame:pro 286 IGGQGDQ----QSS-IQQISGMYASALNRYLRPAISELEYKLSD---HISVNMRPAIDPLGDNYLSTISTATRWGALAEN 357 (392) Q Consensus 286 lg~~~~~----~~~-~~~~~~~~~~~l~p~l~~i~~~l~~~l~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~n 357 (392) ||..++. ++| +++..+|++.||.|+++.|+++|+++|++ +++||.+.+++.|.+++++.++.++++|++|+| T Consensus 308 lg~~~~~~~~tysn~eq~~~~f~~~tL~P~~~~ie~~l~~~Ll~~~~~~~f~~~~llr~d~~~r~~~~~~~~~~G~lT~N 387 (409) T protein:vir:83 308 VGLPGATGSLTYSNIEQLFSFHDRSSLRPKATAVMAALDRWALPSPQHLELNRDDYTRPSLVERATAYKIMIEAGVMEPN 387 (409) T ss_pred ccCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEeehhhhhccCHHHHHHHHHHHHhCCCcCHH Confidence 9964321 244 45678999999999999999999999964 589999999999999999999999999999999 Q ss_pred HHHHHHHhCCCCCcccccccCCCCCCCCCC Q lcl|Aclame:pro 358 QATFVLQEAGYIPKDLPAPENTNKKTTGQS 387 (392) Q Consensus 358 E~R~~l~~~g~~~~e~~~~~~~~~~~~gd~ 387 (392) |+|+++ |++|. ++...+++|+= T Consensus 388 E~R~~~---glpp~-----~ggd~l~~~gv 409 (409) T protein:vir:83 388 EARAME---RLHSE-----AAAVRLSGGGV 409 (409) T ss_pred HHHHHh---CCCCC-----CCCcccCCCCC Confidence 999976 44432 23344444444 No 45 >protein:vir:81218 Length: 423 # NCBI annotation: gp3, phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456733;genbank:gi:157168376;interpro:IPR006427;interpro:IPR006944;uniprot:Q9MBK2;genbank:GeneID:5580341 Probab=100.00 E-value=1.8e-77 Score=441.37 Aligned_cols=383 Identities=15% Similarity=0.114 Sum_probs=292.6 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) ||||++++.+....+.... .+. . ..+.....+.+........++++|+|++||++||++||+||+++++++. T Consensus 1 Mg~~~~~~~~~~~~~~~~~-~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~dg~ 75 (423) T protein:vir:81 1 MGFLQKLGLAPSVVATPEP-IEL---V-GPIFESLKLSTKNMTVEQIWEDQPHLRTVTTFIARNVASLQLQAFERVEDGG 75 (423) T ss_pred CchhHhhccccccccCccc-ccc---c-cccccccccccchhhHHHHHHhhhHHHHHHHHHHHhHhhCceEEEEEecCCc Confidence 9999998765443322111 111 0 1111122222222234455678999999999999999999999986432 Q ss_pred ---------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccC--CceeEEEEeccccceeeecCCC-ceEEEEE Q lcl|Aclame:pro 80 ---------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNAN--GADMKWEYLRPSQVNTYYFEYE-NGMYYNI 147 (392) Q Consensus 80 ---------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~--G~~~~l~~l~~~~v~~~~~~~~-~~~~~~~ 147 (392) ..++.+||++||+++||+.++.+|+++||+|+++.|+.. +....++|++++.+++....++ +.+.|.+ T Consensus 76 ~~~~~~~~~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~rd~~~~~~~~~l~p~~~~~v~~~~~~~~~~~~~Y~~ 155 (423) T protein:vir:81 76 RERVREGHLARVCKLANSDMTMYDLLERTMFDLCLYDEFFWLLPGDLGVDTPTLDIRPIPVSWVQRRAYKDGWGSLDYII 155 (423) T ss_pred eeeeccchHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcCcceEEEeecccceeeeeeccCCCcceEEEE Confidence 235679999999999999999999999999999998753 4677888888888888766543 4555555 Q ss_pred EecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCC-----Cc Q lcl|Aclame:pro 148 TFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGG-----LL 222 (392) Q Consensus 148 ~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~-----~~ 222 (392) .......+..+.+++++|||+|.+++++..+|+||+..+++.+....+++++..++|+||++|+++++++... ++ T Consensus 156 ~~~~~~~g~~~~~~~~evih~r~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gvi~~~~~~~~~~l~~ 235 (423) T protein:vir:81 156 IESGDNDGRSVKVPGERVIHRHGYNPKTMKRGKSPVQSLRDILGEQIEAAIFRAQMWRNGPRPGMVIMRDPESKAGKWDA 235 (423) T ss_pred EEecCCCceEEEEcccceEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcccCccCCH Confidence 5555556777899999999999999999889999999999999999999999999999999999999987532 22 Q ss_pred hH--HHHHHHHHHH-hccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccccc-ch-HH Q lcl|Aclame:pro 223 SD--KDKASRSRSF-MKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ-SS-IQ 297 (392) Q Consensus 223 ~~--~~~~~~~~~~-~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~-~~-~~ 297 (392) ++ +.++.+.+.+ .+..|+|++++|++|++|++++++++|+||+|++++++++||++|||||++||..++++ ++ ++ T Consensus 236 e~~~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~s~~d~q~~e~~~~~~~eIa~~fgVPp~~lg~~~~~t~sn~e~ 315 (423) T protein:vir:81 236 ESRTRFMANLRASFSPKSSDVGGTLLLEDGMKAENFHTTSKDEQTVETTKLSLQTVAQVYGINPTMVGQLDNANYSNVRE 315 (423) T ss_pred HHHHHHHHHHHHHhccccccCCcceecCCCceEEeccCChhhHHHHHHHHhhHHHHHHHhCCCHHHhcCCCCCCcccHHH Confidence 22 2234455555 36788999999999999999999999999999999999999999999999999754443 44 45 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh---------hccchhhhhhcChHHHHHHHHHHH-hCCccCHHHHHHHHHhCC Q lcl|Aclame:pro 298 QISGMYASALNRYLRPAISELEYKLSDH---------ISVNMRPAIDPLGDNYLSTISTAT-RWGALAENQATFVLQEAG 367 (392) Q Consensus 298 ~~~~~~~~~l~p~l~~i~~~l~~~l~~~---------~~~d~~~~~~~~~~~~~~~~~~~~-~~g~~t~nE~R~~l~~~g 367 (392) +.+.|++++|.|++..|+++|+++|++. ++||.+.+++.|.+++++.+..++ ++|++|+||+|++++..+ T Consensus 316 ~~~~f~~~~L~P~~~~ie~~l~~~L~~~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~l~~~G~~T~NE~R~~~gl~p 395 (423) T protein:vir:81 316 FRKALYGDNLGSWIRIIQDVMNLFLLPRVGIDNEKFYFEFNLEEKLRASFEEAAEIKRAAVGNVAWMTINEVRAMDNLPS 395 (423) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCccccccCccEEEecchhhhccCHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCC Confidence 6789999999999999999999999742 678999999999999999999987 469999999999874444 Q ss_pred CCCcccccccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 368 YIPKDLPAPENTNKKTTGQSNEPVP 392 (392) Q Consensus 368 ~~~~e~~~~~~~~~~~~gd~~~p~p 392 (392) ++..|.... .++..+ ++++++.- T Consensus 396 ~~gGD~~~~-p~n~~~-~~~~~~~~ 418 (423) T protein:vir:81 396 IDGGDDLAR-PLNTEF-GDSEDAPG 418 (423) T ss_pred CCCcceeec-cccccc-CccCCCCC Confidence 332222111 122211 22222211 No 46 >protein:vir:94666 Length: 723 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579205;genbank:gi:93007441;genbank:GeneID:5076785 Probab=100.00 E-value=1.8e-77 Score=441.29 Aligned_cols=364 Identities=11% Similarity=0.042 Sum_probs=284.9 Q ss_pred cccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh---------hhhcccCCccCCHHH Q lcl|Aclame:pro 24 YFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN---------QGIIDNPSTNANKHG 94 (392) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~---------~~~~~~PN~~~t~~~ 94 (392) .++.....+.+..|++.....++.+.++++++||+||++||++||+||+++++++. +.++.+||++||+++ T Consensus 1 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~V~acV~~Ia~~iA~lpl~l~~~~~~~~~~~~l~~lL~~~PN~~~t~~~ 80 (723) T protein:vir:94 1 MTTFPSGAGGWNAWSADSVFGNGAKGWSNSAVAYRCISMLANNAASVDLVVRGPDGELDELHPLSQLWNVMPNRAMPAQV 80 (723) T ss_pred CcccccCCCccccccccccccccHHHHhhhHHHHHHHHHHHHhhccceeEEEcCCCccchhhHHHHHHhhCCCCCCCHHH Confidence 11111222233444555566678889999999999999999999999999987542 234568999999999 Q ss_pred HHHHHHHHHHHhCCeeEEEecc---cCCceeEEEEeccccceeeecCCCceE------EEEEEecCCcceeeEEEecceE Q lcl|Aclame:pro 95 FWQSMFAQLLLGGEAFAYRWRN---ANGADMKWEYLRPSQVNTYYFEYENGM------YYNITFDDPKIEPILQAPQSDL 165 (392) Q Consensus 95 f~~~~~~~l~l~G~a~~~i~r~---~~G~~~~l~~l~~~~v~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v 165 (392) ||+.++.+|+++||+|+++.|+ ..|.|.+++++++..+.+....++... .+.++. ..|..+.+++++| T Consensus 81 f~~~~~~~lll~Gnay~~i~r~~r~~~g~p~~l~~l~~~~~~v~~~~~~~~~~~~~~~~y~~~~---~~G~~~~~~~~dI 157 (723) T protein:vir:94 81 LKALSMTRLQLDGQCHLWLNYNGRTPAGVPDEIWYVYDRVTTIVATRAADAVPQAQIIGYVIER---TDGVRVPVLADEM 157 (723) T ss_pred HHHHHHHHHhhcCCeEEEEEecCCccccceeEEEEecCcceEEeecCCCccceeeeeeEEEEEe---cCceeEEecccce Confidence 9999999999999999999964 458999999999988877665544322 222222 2356678999999 Q ss_pred EEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH--HHHHHHHHHHhccccCCce Q lcl|Aclame:pro 166 IHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD--KDKASRSRSFMKRSRSGGP 243 (392) Q Consensus 166 ih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~ 243 (392) ||+|++++.+.++|+||+..++..|....+++++..++|+||++|+||++.++ ..+++ +.++.+.+.+.|..|+|++ T Consensus 158 iHir~~~~~dg~~G~Spi~~a~~~i~~~~aa~~~~~~~f~NG~~p~giL~~~~-l~~e~~~~~~~~~~~~~~G~~Nagk~ 236 (723) T protein:vir:94 158 LWLRFSDPYDPLAVMAPWKAARAAVDADFYAATWQRQSFKNGARPGGVVNLGD-MDEQTFTKTVAAFRSQVEGVQNAGRH 236 (723) T ss_pred EEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcCC-CCHHHHHHHHHHHHHHhhchhhcCcc Confidence 99999887777899999999999999999999999999999999999999864 33332 3455677788899999999 Q ss_pred eecc----------CCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 244 VVLD----------DLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRP 313 (392) Q Consensus 244 ~vl~----------~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p~l~~ 313 (392) +||+ +|++|++++++++|+||+|++++++++||++|||||++|++.+++.|..++...|++++|.|+++. T Consensus 237 ~vL~g~~~~~~vl~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~i~~~st~sN~e~~~~~f~~~tL~P~~~~ 316 (723) T protein:vir:94 237 LLIAGQGSDGGAAGKGATFTSLSMSPAEMDYINSRMHSAEEVMLAFGIRKDALLGGSTYENQAEAKAAVWTETLIPQMEV 316 (723) T ss_pred eeecccccccccccCCceEEEccCCHHHHHHHHHHHHhHHHHHHHhCCChhHcCCCCCcccHHHHHHHHHHHHHHHHHHH Confidence 9985 599999999999999999999999999999999999999876555555667889999999999999 Q ss_pred HHHHHHHHhhhh------hccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcc-cccccCCCCCCCCC Q lcl|Aclame:pro 314 AISELEYKLSDH------ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKD-LPAPENTNKKTTGQ 386 (392) Q Consensus 314 i~~~l~~~l~~~------~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e-~~~~~~~~~~~~gd 386 (392) |+++|+++|++. +.||...+++.|.+++++.+..++++|++|+||+|++++..+++..+ ........ ..-+. T Consensus 317 ie~~ln~~Ll~~~g~~~~~~f~~~~lLr~D~~~r~~~~~~~v~~G~~T~NE~R~~lglpPi~gGd~~~~~~p~~-~~~a~ 395 (723) T protein:vir:94 317 MASITDLQLLPDIGWTVEWDFNSVPALQEDLEAQAGRNQGYLVNDVLMVDEVRATIGLDPLPGGIGQMTLTPYR-AQFAP 395 (723) T ss_pred HHHHHhHhhcccccCceEEeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcccceecccc-ccccC Confidence 999999999764 44566667889999999999999999999999999987444433222 10000000 00011 Q ss_pred CCCCCC Q lcl|Aclame:pro 387 SNEPVP 392 (392) Q Consensus 387 ~~~p~p 392 (392) ++.|.| T Consensus 396 ~~~~~p 401 (723) T protein:vir:94 396 APAPAP 401 (723) T ss_pred CCCCCc Confidence 122223 No 47 >protein:vir:100187 Length: 385 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025029;genbank:gi:48697262;genbank:GeneID:2948285 Probab=100.00 E-value=7.1e-77 Score=438.05 Aligned_cols=374 Identities=23% Similarity=0.391 Sum_probs=303.8 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhcc-CCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchhhh Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLL-GDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKNQG 81 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~ 81 (392) |||||++............. .....+..+. +..+..+++++|+++++|++||++||++||++|++++++..+. T Consensus 1 Mg~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~~p~~v~~~~~~~ 74 (385) T protein:vir:10 1 MGLLTPRNFNKRKAKNMVYP------SNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVASAHFKTENTATLN 74 (385) T ss_pred Cccccchhcccccccccccc------cchhhhhhhccccCccccCHHHhhccHHHHHHHHHHHHHHhhCceeeeccchhh Confidence 99999764332222111111 1122233332 3345678999999999999999999999999999999999999 Q ss_pred hcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCcceeeEEEe Q lcl|Aclame:pro 82 IIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQAP 161 (392) Q Consensus 82 ~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (392) ++.+||++||+++||+.++.+++++||||++++|+ +.+++|+++.+|++..+. +..++.+.... .+..+.++ T Consensus 75 ll~~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~r~----~~~~~p~~~~~v~~~~~~--~~~~~~~~~~~--~~~~~~~~ 146 (385) T protein:vir:10 75 RLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ----NLEHIPNSDVQINYLPGN--MGIVYTVLESN--DRPQMVLR 146 (385) T ss_pred hhhcCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcC----ceeEeecCCceEEEEEcC--CceEEEEEEcC--CceEEEEc Confidence 99999999999999999999999999999999875 466788887777766543 34444444433 34567899 Q ss_pred cceEEEecCCCcc--ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH--HHHHHHHHHHhcc Q lcl|Aclame:pro 162 QSDLIHMKLLSID--GGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD--KDKASRSRSFMKR 237 (392) Q Consensus 162 ~~~vih~~~~~~~--~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~ 237 (392) +++|||+|+.+++ +..+|+||+..++..+....+++++..++|+||++|++++++++...+++ +..++..+...+. T Consensus 147 ~~eiihik~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~gil~~~~~~~~~e~~~~~~~~~~~~~~~ 226 (385) T protein:vir:10 147 QDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTG 226 (385) T ss_pred cccEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHHHHHhCc Confidence 9999999986654 35689999999999999999999999999999999999999997655433 2222333344455 Q ss_pred ccCCceeeccCCceEEeccCChhhHHHH-HHHHHHHHHHHHHhcccHHHcCCccc---ccchHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 238 SRSGGPVVLDDLEEFTALEIKSNVAQLL-SQTDWTSKQYAKVYGLPDSYIGGQGD---QQSSIQQISGMYASALNRYLRP 313 (392) Q Consensus 238 ~~~g~~~vl~~g~~~~~l~~~~~d~~~~-e~~~~~~~~Ia~~fgVP~~~lg~~~~---~~~~~~~~~~~~~~~l~p~l~~ 313 (392) .|+|+++++++|++|++++.++.|+|++ |.+++++++||++|||||++||+.+. .+++.++...+|..+|.|+++. T Consensus 227 ~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~sn~eq~~~~~~~~l~P~~~~ 306 (385) T protein:vir:10 227 DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNP 306 (385) T ss_pred cccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCcccccHHHHHHHHHHHHHHHHHH Confidence 7899999999999999999999999975 99999999999999999999997432 2456677788888999999999 Q ss_pred HHHHHHHHhh-hhhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccc-ccccCCCCCCCCCCCCC Q lcl|Aclame:pro 314 AISELEYKLS-DHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDL-PAPENTNKKTTGQSNEP 390 (392) Q Consensus 314 i~~~l~~~l~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~-~~~~~~~~~~~gd~~~p 390 (392) |+++|+++|+ .+++||...+++.|.+++++.+.+++++|++|+||+|++++..|+++.+. ......++.++|++++- T Consensus 307 ie~~l~~~l~~~~~~f~~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~p~~~~~~~~~~~~~~~~g~~~dn 385 (385) T protein:vir:10 307 IVDELRLKMNAPDLELDIKDMLDVDDSALINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTTQVKGGDEGDN 385 (385) T ss_pred HHHHHHHhhCCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCccCCCCCccccCcccccCCCCCCCC Confidence 9999999996 57999999999999999999999999999999999999998888887553 33445667788888877 No 48 >protein:vir:2683 Length: 412 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075502;genbank:gi:12719431;genbank:GeneID:920150 Probab=100.00 E-value=2.5e-76 Score=435.07 Aligned_cols=379 Identities=14% Similarity=0.114 Sum_probs=290.8 Q ss_pred chhhhh---hcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh Q lcl|Aclame:pro 3 LPILNF---INQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN 79 (392) Q Consensus 3 Mg~~n~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~ 79 (392) |.||+. +++.................. .+..+.+.++..++.++++++|+|++||++||++||++|++++++.. T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~a~~~~~v~~~i~~ia~~iA~lp~~~~~~~~ 77 (412) T protein:vir:26 1 MNVIAKENIVTRIKKKLIDNWIDQSTSKLY---DFSPWKNRSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK 77 (412) T ss_pred CccchhhhhhhhhhhhHhhhhhcccccccc---cccccCCccccccchhhhhccHHHHHHHHHHHHhHhhCceeEeeccc Confidence 877732 222111111111111111111 13334455667789999999999999999999999999999986542 Q ss_pred -------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCC Q lcl|Aclame:pro 80 -------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDP 152 (392) Q Consensus 80 -------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 152 (392) ..++.+||++||+++||+.++.+|+++||+|++++|+.+|++++|+|++|+.|++..+.+++.++|.++..+ T Consensus 78 ~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~~- 156 (412) T protein:vir:26 78 VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAAT- 156 (412) T ss_pred cccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEcCC- Confidence 245679999999999999999999999999999999999999999999999999999988887776665443 Q ss_pred cceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHH--HHHH Q lcl|Aclame:pro 153 KIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKD--KASR 230 (392) Q Consensus 153 ~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~--~~~~ 230 (392) +..+.+++++|||+++++..+..+|+||+.+++..+..+.+++++. ++.++..++++++.++...+++.+ ++.+ T Consensus 157 --g~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~a~~~~~--~~~~~~~~~~i~~~~~~l~~e~~~~~~~~~ 232 (412) T protein:vir:26 157 --GNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKYGSNVGKEKRQQVLEDF 232 (412) T ss_pred --ceEEEEccccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCceEEecCCCCCHHHHHHHHHHH Confidence 4567899999999999877778899999999999999999998874 555565667777777665554322 2233 Q ss_pred HHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc-cch-HHHHHHHHHHHHH Q lcl|Aclame:pro 231 SRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-QSS-IQQISGMYASALN 308 (392) Q Consensus 231 ~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-~~~-~~~~~~~~~~~l~ 308 (392) .+. ..++|++++|++|++|++++++++|+||+|++++++++||++|||||++||+.+++ +++ +++.+.|++.+|. T Consensus 233 ~~~---~~~~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~sn~e~~~~~f~~~~l~ 309 (412) T protein:vir:26 233 KQY---YEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELNRFYLQHTLL 309 (412) T ss_pred HHH---hhcCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHH Confidence 332 24678899999999999999999999999999999999999999999999975443 344 5567899999999 Q ss_pred HHHHHHHHHHHHHhhh--------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcccccc-cCC Q lcl|Aclame:pro 309 RYLRPAISELEYKLSD--------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAP-ENT 379 (392) Q Consensus 309 p~l~~i~~~l~~~l~~--------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~-~~~ 379 (392) |++..|+++|+++|++ +++||...+++.|.+++++.++.++++|++|+||+|++++..+++..|.+.. -|+ T Consensus 310 P~~~~ie~~ln~kLl~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~~~~~~n~ 389 (412) T protein:vir:26 310 PIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDL 389 (412) T ss_pred HHHHHHHHHHHhhcCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeecccc Confidence 9999999999999963 3789999999999999999999999999999999999885544432222211 122 Q ss_pred CC----------CCCCCCCCCCC Q lcl|Aclame:pro 380 NK----------KTTGQSNEPVP 392 (392) Q Consensus 380 ~~----------~~~gd~~~p~p 392 (392) .| ..||+.|+--= T Consensus 390 ~~~~~~~~~~~~~~gG~~n~~e~ 412 (412) T protein:vir:26 390 YPIDTPLELRKSLKGGDKNVNES 412 (412) T ss_pred cccccchhhcccccCCCCCcCCC Confidence 12 23332221111 No 49 >protein:vir:9702 Length: 406 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795464;genbank:gi:28876227;genbank:GeneID:1257772 Probab=100.00 E-value=3.6e-76 Score=434.19 Aligned_cols=368 Identities=21% Similarity=0.245 Sum_probs=281.3 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) |+||+.+..... + ....+...+.+.....++..+||++|+|++||++||++||+||+++++++. T Consensus 1 m~~f~~~~~~~~-----~--------~~~~~~~~~~~~~~~~~~~~~Al~~~~V~~~i~~Ia~~iA~lp~~~~~~~g~~~ 67 (406) T protein:vir:97 1 MSFFQPLGTSKV-----S--------YDDYISSVLAGDVSQKYLGVSALKNSDILTATSIIAGDIARFPLVKKDVNGDII 67 (406) T ss_pred CccccccCCCCC-----C--------cchHHHHHhcCCCCcccccchhhccHHHHHHHHHHHHhhhhCeeEEEecCcccc Confidence 998864322111 0 011122223333445567778999999999999999999999999886542 Q ss_pred ------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEeccc-CCceeEEEEeccccceeeecCCCceEEEEEEecCC Q lcl|Aclame:pro 80 ------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNA-NGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDP 152 (392) Q Consensus 80 ------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~-~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 152 (392) ..++.+||++||+++||+.++.+|+++||||+++.|+. .|++.+|+|++|+.|++..++++. ++|.+.. . T Consensus 68 ~~~~~~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gnay~~i~r~~~~g~~~~L~~i~p~~v~v~~~~~~~-~~y~~~~--~ 144 (406) T protein:vir:97 68 HDEDINYLLNVKSTSNASARTWKFAMAVNAILTGNSFSRILRDPKTNQALQFQFYRPSETTVEETDNHE-IVYTFTD--M 144 (406) T ss_pred ccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCCeEEEEEEECCCeeEEEEcCCce-EEEEEEe--c Confidence 23457899999999999999999999999999999985 689999999999999998876554 4443332 2 Q ss_pred cceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH--HHHHHH Q lcl|Aclame:pro 153 KIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD--KDKASR 230 (392) Q Consensus 153 ~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~--~~~~~~ 230 (392) ..+..+.+++++|||+|+++.++ .+|+||+.+++..+..+.+++++..++|+||+.|++++..++...+++ +.++.+ T Consensus 145 ~~~~~~~~~~~evih~r~~~~dg-~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~~i~~~~~~l~~e~~~~~~~~~ 223 (406) T protein:vir:97 145 LTAKQVKCFAHDVIHWKFFSHDT-ILGRSPLLSLGDEIDLQTGGINTLIKFFKDGFSSGILTMKGAQLSGDARQRARQEF 223 (406) T ss_pred CCceEEEEccccEEEecCCCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEecCCCCCHHHHHHHHHHH Confidence 34566889999999999887665 679999999999999999999999999999999988888777655554 334455 Q ss_pred HHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHHHHHHHH Q lcl|Aclame:pro 231 SRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNRY 310 (392) Q Consensus 231 ~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p~ 310 (392) .+.+.+ .|+|+++||++|++|++++.+++|+|++|++++++++||++|||||++||+.+++.+..++.+.|++.+|.|+ T Consensus 224 ~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~~~~e~~~~~f~~~~l~P~ 302 (406) T protein:vir:97 224 EKMREG-SVGGSPLVFDSTMEYTPLEIDTNVLQLITSNNFSTAQIAKALRVPSYKLGVNSPNQSVAQLMEDYVTNDLPFY 302 (406) T ss_pred HHHhcc-cccCceeecCCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHcCCCCCcchHHHHHHHHHHHHHHHH Confidence 554444 6889999999999999999999999999999999999999999999999987666666778899999999999 Q ss_pred HHHHHHHHHHHhhhh-------hccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCC-Cc-ccccc-cCCC Q lcl|Aclame:pro 311 LRPAISELEYKLSDH-------ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYI-PK-DLPAP-ENTN 380 (392) Q Consensus 311 l~~i~~~l~~~l~~~-------~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~-~~-e~~~~-~~~~ 380 (392) +++|+++|+++|++. ++||. +.+.....+.+.+++++|++|+||+|++++..+.+ |+ |.+.. -|.. T Consensus 303 ~~~ie~~l~~kll~~~~~~~~~i~fd~----~~~~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~~gD~~~~~~n~~ 378 (406) T protein:vir:97 303 FDAITSELGLKTLNDKDRRLYHIEFDT----RSVTGRNVDEIVKLVNNQILTPNQGLVELGKQKSTDPNMDRYQSSLNYV 378 (406) T ss_pred HHHHHHHHhhhhcChhhccceeEEEec----CccchhhHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeEeeccCcc Confidence 999999999999753 45554 44555667778889999999999999988444332 11 11111 1222 Q ss_pred CCCCCCCCCCCC Q lcl|Aclame:pro 381 KKTTGQSNEPVP 392 (392) Q Consensus 381 ~~~~gd~~~p~p 392 (392) |+...++.+... T Consensus 379 ~~~~~~~~~~~~ 390 (406) T protein:vir:97 379 FLDKKEEYQDKV 390 (406) T ss_pred chhccccccccc Confidence 222111111100 No 50 >protein:vir:8100 Length: 466 # NCBI annotation: gp4 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817681;genbank:gi:29566112;genbank:GeneID:1259306 Probab=100.00 E-value=3e-76 Score=434.63 Aligned_cols=387 Identities=12% Similarity=0.055 Sum_probs=297.8 Q ss_pred chhhhhhccccccccccccc--------------ccccCcchhhhhhhcc-------CCCCcccchhhhhcchHHHHHHH Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQ--------------SYFPDGNDAQIMESLL-------GDNNEWVSARAALRNSDLFSIIL 61 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~-------~~~~~~~~~~~al~~~~v~~~i~ 61 (392) ||||+++++......+.... .+........+..++. +.++..|+.++|+++|+|++||+ T Consensus 1 M~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~a~~~~~v~~~i~ 80 (466) T protein:vir:81 1 MRLIDRLLSTRGAAPRMSIDDYAQMLNEFAFNGIGYGFGGGVPRIQQTLAGPSTELAPDTFVGLATQAYQANGPVFACML 80 (466) T ss_pred CchhHHHhhccCcccccchhhhhhhhhhhhccccccccccccHHHHHhhccccccccCccccccchhhhhccHHHHHHHH Confidence 99999998765532111110 1111122222333322 23466789999999999999999 Q ss_pred HHHHhhhhCceeeecchh-----------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccC--------Ccee Q lcl|Aclame:pro 62 QLSSDLAIVKINAEKKKN-----------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNAN--------GADM 122 (392) Q Consensus 62 ~ia~~ia~lp~~~~~~~~-----------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~--------G~~~ 122 (392) +||++||+||++++++.. ..++.+||++||+++||+.++.+++++||||++|+|+.. |.++ T Consensus 81 ~Ia~~ia~lp~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~g~l~~~~~g~~~ 160 (466) T protein:vir:81 81 VRQLVFSSVRFRWQRLRDGKPSDTFGSRDLQILETPWKGGTTQDMLSRMIQDADLAGNSYWTIVDGEFVRMRPDWVDVVV 160 (466) T ss_pred HHHHhhccCceEEEEecCCceeeccccHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEecCccccccccCccee Confidence 999999999999987532 346889999999999999999999999999999999765 5589 Q ss_pred EEEEeccccceeeecCCCceEE-EEEEecCC-cceeeEEEecceEEEecCC-CccccccCCCHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 123 KWEYLRPSQVNTYYFEYENGMY-YNITFDDP-KIEPILQAPQSDLIHMKLL-SIDGGKTGISPLYSLRRESKIQRASDRL 199 (392) Q Consensus 123 ~l~~l~~~~v~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~vih~~~~-~~~~~~~G~s~l~~~~~~i~~~~~~~~~ 199 (392) +++|++|++|++..+.++...+ +.++.... .....+.++.++|||||++ ++.+..+|+||+..+++.|..+.+++++ T Consensus 161 ~l~~l~~~~v~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~dviHir~~~~~~d~~~G~s~i~~~~~~i~~~~a~~~~ 240 (466) T protein:vir:81 161 EERMVRGGRGELGGGQLGWRKVGYLYTEGGRQSGNESVGFLAEDVVHFAPIPDPLASYRGMSWLTPILREIRADQAMSKH 240 (466) T ss_pred EEEEecCcceEEEEcCCCceEEEEEEEecCcccccceeeeccccEEEEcCCCCcccccccccHHHHHHHHHHHHHHHHHH Confidence 9999999999999988776543 33433322 2335678999999999975 3556678999999999999999999999 Q ss_pred HHHHHHccCCcceEEeeCCCCCchH--HHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 200 TISSLNSSLNVPGVLTVKGGGLLSD--KDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAK 277 (392) Q Consensus 200 ~~~~~~ng~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~ 277 (392) ..++|+||++|+||+++++..++++ +.++.+.+.+.|.+|+|+++||++|++|++++.+++|+||+|++++++++||+ T Consensus 241 ~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~ 320 (466) T protein:vir:81 241 QAKFFDNGATVNLVIKHNPMADPAAVKKWADEVNSKHAGVDNAWKNLNLYPGADADVVGSNLQEIDFKNVRGGGETRIAA 320 (466) T ss_pred HHHHHhcCCCcceEEecCCCCCHHHHHHHHHHHHHHhcCccccccceEcCCCceEEEccCChhHHHHHHHHHHHHHHHHH Confidence 9999999999999999998766554 34556677888999999999999999999999999999999999999999999 Q ss_pred HhcccHHHcCCccc----ccch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhccchhhhhhcChHHHHHH- Q lcl|Aclame:pro 278 VYGLPDSYIGGQGD----QQSS-IQQISGMYASALNRYLRPAISELEYKLSD-------HISVNMRPAIDPLGDNYLST- 344 (392) Q Consensus 278 ~fgVP~~~lg~~~~----~~~~-~~~~~~~~~~~l~p~l~~i~~~l~~~l~~-------~~~~d~~~~~~~~~~~~~~~- 344 (392) +|||||++||...+ .+++ +++.+.|++.||.|++++|+++|+++|++ +++||...+++.|.+++.+. T Consensus 321 ~fgVPp~~lG~~~~~~~st~sn~eq~~~~f~~~tl~P~~~~ie~~l~~~L~~~~~~~~~~~~f~~~~llr~d~~~r~~~~ 400 (466) T protein:vir:81 321 AAGVPPVIVGLSEGLAAATYSNYGQARRRLADGTAHPLWQNLSGCIGHVMPDMGPDVRLWYDADDVPFLREDEKDAADIQ 400 (466) T ss_pred HhCCCHHHcccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCcceEEEecchhhhccCHHHHHHHH Confidence 99999999996422 1233 45678999999999999999999999975 46788899999998876653 Q ss_pred ------HHHHHhCCccCHHHHHHHHHhCC---CCCcccccccCCCC------------CCCCCCCCC Q lcl|Aclame:pro 345 ------ISTATRWGALAENQATFVLQEAG---YIPKDLPAPENTNK------------KTTGQSNEP 390 (392) Q Consensus 345 ------~~~~~~~g~~t~nE~R~~l~~~g---~~~~e~~~~~~~~~------------~~~gd~~~p 390 (392) +..++++|+ |+||+|+.+.... +.+.++...+.+++ ..||++|.- T Consensus 401 ~~~~~~~~~~~~~g~-t~nE~r~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~ngn 466 (466) T protein:vir:81 401 KVRAETINTLITAGY-EPESVVAAVNSGDLRLLKHTGLTSVQLLPPGVSASASSDTPTSGGADDNGN 466 (466) T ss_pred HHHHHHHHHHHHcCC-ChhhccccccCCccccccCCCcchhhhcccccccccCCCCcccCCCCcCCC Confidence 667888885 9999998653111 11122222222221 122222222 No 51 >protein:vir:3868 Length: 417 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680485;swissprot:trembl:q8ltc2;genbank:gi:22296525;interpro:IPR006427;interpro:IPR006944;uniprot:Q8LTC2;genbank:GeneID:951699 Probab=100.00 E-value=4.3e-76 Score=433.77 Aligned_cols=370 Identities=19% Similarity=0.223 Sum_probs=278.0 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) |+||. +.... ..+.+.. ....... ..+..+. +...+||++++||+||++||++||++|++++++.. T Consensus 1 m~~~~---~~~~~-~~~~~~~---~~~~~~~---~~~~~g~-~~~~~Al~~~~V~~cv~~ia~~iA~lp~~~~~~~~~~~ 69 (417) T protein:vir:38 1 MKLFR---GLATE-VDPHWAD---HLLDSGV---IPSFRGG-YLGISALRNSDVLTAVSIVSGDVSRFPLVITDSSTDEV 69 (417) T ss_pred Ccccc---ccccC-CCccchh---hhccccc---ccccCCc-eechhhcccHHHHHHHHHHHHhhccCeeEEEEcCCcce Confidence 88863 22111 1111111 0111111 1222233 34467999999999999999999999999987542 Q ss_pred -------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccC-CceeEEEEeccccceeeecCCCceEEEEEEecC Q lcl|Aclame:pro 80 -------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNAN-GADMKWEYLRPSQVNTYYFEYENGMYYNITFDD 151 (392) Q Consensus 80 -------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~-G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~ 151 (392) ..++.+||++||+++||+.++.+++++||+|++++|+.. |.|..|+|++|+.|++..+..+.. +|.++..+ T Consensus 70 ~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~y~~i~r~~~g~~~~~l~~l~p~~v~v~~~~~~~~-~y~~~~~~ 148 (417) T protein:vir:38 70 IDLANIEYLMNTKVNKRLSAYQWKFPMMVNAILTGNAYSRIVRDPITNEPAMFEFYAPSQTQVDTSDPDNI-IYRFTPYN 148 (417) T ss_pred eccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCEEEEEEEeCCceEEEEEcCCCeE-EEEEEEcC Confidence 235678999999999999999999999999999999865 679999999999999987765544 44444433 Q ss_pred CcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHH--HHHH Q lcl|Aclame:pro 152 PKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDK--DKAS 229 (392) Q Consensus 152 ~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~--~~~~ 229 (392) .+....+++++|||+|+++.++ ++|+||+.+++..|..+.+++++..++|+||++|+++++.++...+++. .++. T Consensus 149 --~~~~~~~~~~dviH~r~~~~d~-~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~~~l~~e~~~~~~~~ 225 (417) T protein:vir:38 149 --SSMQKVCGFEDVIHWKFFSYDT-IMGRSPLLSLGDEIGLQESGVSTLQKFFKSGLKGSIIKAKESRLSAEARQKIRED 225 (417) T ss_pred --CcEEEEecCcceEEecCCCCCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHH Confidence 3445678999999999987665 6899999999999999999999999999999999999999987766543 3344 Q ss_pred HHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHHHHHHH Q lcl|Aclame:pro 230 RSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNR 309 (392) Q Consensus 230 ~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p 309 (392) +.+.+.+ .|+|++++|++|++|++++.+++|+||+|++++++++||++|||||++||..+++.+..++..+|++++|.| T Consensus 226 ~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~s~~e~~~~~~~~~tl~P 304 (417) T protein:vir:38 226 FERAQAG-ADAGSPIIVDATMDYQPLEVDTNVLNLINSNNYSTAQIAKALRVPAYRLAQNSPNQSVKQLADDYIRNDLPF 304 (417) T ss_pred HHHHhcc-cccCCceeccCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHhCCCCcchhHHHHHHHHHHHHHHH Confidence 5555555 589999999999999999999999999999999999999999999999997666555667889999999999 Q ss_pred HHHHHHHHHHHHhhhh-------hccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccc-c--cccCC Q lcl|Aclame:pro 310 YLRPAISELEYKLSDH-------ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDL-P--APENT 379 (392) Q Consensus 310 ~l~~i~~~l~~~l~~~-------~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~-~--~~~~~ 379 (392) +++.|+++|+++|++. ++||...+.+ .....+.+++++|++|+||+|++++..+++..+. . ..-|. T Consensus 305 ~~~~ie~~l~~~Ll~~~~~~~~~~~fd~~~l~~----~~~~~~~~~~~~G~~T~NE~R~~~gl~pi~~g~~d~~~~~~n~ 380 (417) T protein:vir:38 305 YFEPITSEFELKLLDDAQRHQYCIGFDTKSVNG----LPIADVNTAVNGGLWTGNEGRAELGKKPLKDPNMDRIQSTLNT 380 (417) T ss_pred HHHHHHHHHHhhhcChhhcccceEEechhhhhH----HHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeeeecccc Confidence 9999999999999753 4555444322 2245577899999999999999885444432111 1 11111 Q ss_pred --------------CCCCCCCCCCCCC Q lcl|Aclame:pro 380 --------------NKKTTGQSNEPVP 392 (392) Q Consensus 380 --------------~~~~~gd~~~p~p 392 (392) ....||+.+..-. T Consensus 381 ~~~d~~~~~~~~~~~~~kgg~~~~~~~ 407 (417) T protein:vir:38 381 VFLDQKEAYQAEHAAELKGGDTNAKGN 407 (417) T ss_pred cccccccccccccccccCCCCCCCCCC Confidence 1122333322222 No 52 >protein:vir:100882 Length: 383 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Probab=100.00 E-value=2.3e-75 Score=429.79 Aligned_cols=370 Identities=24% Similarity=0.403 Sum_probs=299.8 Q ss_pred chhhhhh--cccccccccccccccccCcchhhhhh-hccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh Q lcl|Aclame:pro 3 LPILNFI--NQTNDPPEAGSVQSYFPDGNDAQIME-SLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN 79 (392) Q Consensus 3 Mg~~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~ 79 (392) ||||++. +++.... . ... .....+. .+.+..+..+++++|+++|+|++||++||++||++|++++++.. T Consensus 1 Mg~~~~~~~~k~~~~~-~------~~~-~~~~~~~~~~~~~~~~~v~~~~~l~~~~v~~~i~~ia~~ia~~~~~~~~~~~ 72 (383) T protein:vir:10 1 MGLLTPKNFSKRNAKN-M------VYP-SNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTAT 72 (383) T ss_pred CCcccccccccccccc-c------ccc-cchhhhhhhccCccccccchhHhhcchHHHHHHHHHHHhhccCceeecccch Confidence 9999853 2222221 1 111 1112222 22344567789999999999999999999999999999999999 Q ss_pred hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCcceeeEE Q lcl|Aclame:pro 80 QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQ 159 (392) Q Consensus 80 ~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (392) +.++++||++||+++||+.++.+++++||||++++|+ +.+++|+++.+|++..+ .+..++.+.... .+..+. T Consensus 73 ~~ll~~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~~~----~~~~~p~~~~~v~~~~~--~~~~~~~~~~~~--~~~~~~ 144 (383) T protein:vir:10 73 LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ----NLEHIPNSDVQINYLPG--NMGIVYTVLESN--DRPKMV 144 (383) T ss_pred hhhhhCCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcC----ceeEeecCcceEEEEEc--CCceEEEEEEcC--CceEEE Confidence 9999999999999999999999999999999999875 45677777776666554 334444544443 345688 Q ss_pred EecceEEEecCCCccc--cccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHH--HHHHHHHHHh Q lcl|Aclame:pro 160 APQSDLIHMKLLSIDG--GKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDK--DKASRSRSFM 235 (392) Q Consensus 160 ~~~~~vih~~~~~~~~--~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~--~~~~~~~~~~ 235 (392) +++++|||+|+.++++ ..+|+||+.++...+....+++++..++|+||++|++++++++....++. ..++..+... T Consensus 145 ~~~~evih~r~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~~~~e~~~~~~~~~~~~~ 224 (383) T protein:vir:10 145 LRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKAN 224 (383) T ss_pred EcccceEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHHHHHh Confidence 9999999999876543 46899999999999999999999999999999999999999987654432 2233344444 Q ss_pred ccccCCceeeccCCceEEeccCChhhHHHH-HHHHHHHHHHHHHhcccHHHcCCccc---ccchHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 236 KRSRSGGPVVLDDLEEFTALEIKSNVAQLL-SQTDWTSKQYAKVYGLPDSYIGGQGD---QQSSIQQISGMYASALNRYL 311 (392) Q Consensus 236 ~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~-e~~~~~~~~Ia~~fgVP~~~lg~~~~---~~~~~~~~~~~~~~~l~p~l 311 (392) +..|+|+++++++|++|++++.++.|+|++ |.+++++++||++|||||++||+... .+++.++...+|..+|.|++ T Consensus 225 ~~~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~~~sn~eq~~~~~~~~l~P~~ 304 (383) T protein:vir:10 225 TGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYV 304 (383) T ss_pred CccccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCCccccHHHHHHHHHHHHHHHH Confidence 557899999999999999999999999974 99999999999999999999997432 23566777778888999999 Q ss_pred HHHHHHHHHHhh-hhhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccccccc-CCCCCCCCCCC Q lcl|Aclame:pro 312 RPAISELEYKLS-DHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAPE-NTNKKTTGQSN 388 (392) Q Consensus 312 ~~i~~~l~~~l~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~~-~~~~~~~gd~~ 388 (392) +.|+++|+++|+ .+++||...+++.|.+++++.+..++++|++|+||+|++++..|+++.|.+... ++++.+|||+- T Consensus 305 ~~ie~~l~~~l~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~t~nE~R~~lg~~p~~~~d~~~~~~~~~~~~gGd~e 383 (383) T protein:vir:10 305 NPIVDELRLKMNAPDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTNETKGGDDK 383 (383) T ss_pred HHHHHHHHHhhCCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccCCcccccCCCcccCCCCCCC Confidence 999999999996 579999999999999999999999999999999999999988888887766543 55677777655 No 53 >protein:vir:93943 Length: 409 # NCBI annotation: ORF010 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239936;genbank:gi:66395598;genbank:GeneID:5131009 Probab=100.00 E-value=2.9e-75 Score=429.24 Aligned_cols=379 Identities=15% Similarity=0.127 Sum_probs=287.1 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) |.=-+++.+................... +..+.+.++..++.++++++++|++||++||++||+||++++++.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~V~~ci~~Ia~~ia~lp~~~~~~~~~~~ 77 (409) T protein:vir:93 1 MAKENIVTRIKKKLIDNWIDQSTSKLYD---FSPWKNRSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVN 77 (409) T ss_pred CCccchhhhhhhhhhhhhhccccccccc---cccccCccccccchhhhhccHHHHHHHHHHHHhhhhCceeEeecccccc Confidence 4332333332221111111111111111 1222334455678899999999999999999999999999987542 Q ss_pred ----hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCcce Q lcl|Aclame:pro 80 ----QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIE 155 (392) Q Consensus 80 ----~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 155 (392) +.++.+||++||+++||+.++.+++++||+|+++.|+.+|++++|+|++|+.|++..+.+++.++|.++..+ + T Consensus 78 ~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~~~~~~~~~~~~y~~~~~~---g 154 (409) T protein:vir:93 78 TEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAAT---G 154 (409) T ss_pred chHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEcCC---c Confidence 345679999999999999999999999999999999999999999999999999999888887776665443 4 Q ss_pred eeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHH--HHHHHHH Q lcl|Aclame:pro 156 PILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKD--KASRSRS 233 (392) Q Consensus 156 ~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~--~~~~~~~ 233 (392) ..+.+++++|||++++++.+..+|+||+.+++..+..+.+++++. ++.++..++++++.++...+++.+ ++.+.+. T Consensus 155 ~~~~~~~~eVih~r~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~l~~e~~~~~~~~~~~~ 232 (409) T protein:vir:93 155 NKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKYGSNVGKEKRQQVLEDFKQY 232 (409) T ss_pred eEEEEccccEEEeCCCCCCCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCceEEecCCCCCHHHHHHHHHHHHHH Confidence 567899999999998877778899999999999999999998874 555555667777777665544322 2233332 Q ss_pred HhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc-cch-HHHHHHHHHHHHHHHH Q lcl|Aclame:pro 234 FMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-QSS-IQQISGMYASALNRYL 311 (392) Q Consensus 234 ~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-~~~-~~~~~~~~~~~l~p~l 311 (392) + .++|+++++++|++|++++++++|+||+|++++++++||++|||||++||+.+++ +++ +++...|++.||.|++ T Consensus 233 ~---~~~g~~~vl~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~~~~~sn~e~~~~~f~~~~l~P~~ 309 (409) T protein:vir:93 233 Y---EENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELNRFYLQHTLLPIV 309 (409) T ss_pred h---hcCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHH Confidence 2 4678899999999999999999999999999999999999999999999975443 344 4567899999999999 Q ss_pred HHHHHHHHHHhhh--------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcccccc-cCCCC- Q lcl|Aclame:pro 312 RPAISELEYKLSD--------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAP-ENTNK- 381 (392) Q Consensus 312 ~~i~~~l~~~l~~--------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~-~~~~~- 381 (392) ..|+++|+++|++ +++||...+++.|.+++++.+++++++|++|+||+|++++..+++..|.+.. -|+.| T Consensus 310 ~~ie~~l~~~Ll~~~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~ 389 (409) T protein:vir:93 310 KQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPI 389 (409) T ss_pred HHHHHHHHhhcCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeeccccccc Confidence 9999999999964 3789999999999999999999999999999999999885544432222211 11111 Q ss_pred ---------CCCCCCCCCCC Q lcl|Aclame:pro 382 ---------KTTGQSNEPVP 392 (392) Q Consensus 382 ---------~~~gd~~~p~p 392 (392) ..||+.|.--= T Consensus 390 ~~~~~~~~~~~gG~~n~~e~ 409 (409) T protein:vir:93 390 DTPLELRKSLKGGDKNVNES 409 (409) T ss_pred ccchhhcccccCCCCCcCCC Confidence 22332211111 No 54 >protein:vir:96980 Length: 409 # NCBI annotation: ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Probab=100.00 E-value=9.4e-75 Score=426.41 Aligned_cols=378 Identities=15% Similarity=0.123 Sum_probs=289.6 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh- Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN- 79 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~- 79 (392) -.|+||.++++..... ..........+ +..+.+.+...++.++|+++++|++||++||++||+||++++++.. T Consensus 2 ~~~~~~~~~k~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~v~~~~a~~~~~V~~ci~~ia~~ia~lp~~~~~~~~~ 75 (409) T protein:vir:96 2 AKENIVTRIKKKLIDN---WIDQSASKLYD---FSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKV 75 (409) T ss_pred ccccchhhhhhHHhhh---hhccccccccc---cccccCccccccchhhHhhhHHHHHHHHHHHHhhhhCceEEeecccc Confidence 4567776665542110 00001111111 1223334445678899999999999999999999999999987543 Q ss_pred ------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCc Q lcl|Aclame:pro 80 ------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPK 153 (392) Q Consensus 80 ------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~ 153 (392) +.++.+||++||+++||+.++.+|+++||||++++|+.+|++++|+|++|+.|++..+.+++.++|.++... T Consensus 76 ~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~~-- 153 (409) T protein:vir:96 76 VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAAT-- 153 (409) T ss_pred cchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEcCC-- Confidence 345679999999999999999999999999999999999999999999999999999888887776665433 Q ss_pred ceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHH--HHHHH Q lcl|Aclame:pro 154 IEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKD--KASRS 231 (392) Q Consensus 154 ~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~--~~~~~ 231 (392) +..+.+++++|||++++++.+..+|+||+..++..+..+.+++++. ++.++..++++++.++..++++.+ ++++. T Consensus 154 -g~~~~~~~~evih~r~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~l~~e~~~~~~~~~~ 230 (409) T protein:vir:96 154 -GNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKYGSNVSTEKRQQVLEDFK 230 (409) T ss_pred -ceEEEEccccEEEeCCCCCCCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCceeEEecCCCCCHHHHHHHHHHHH Confidence 4567899999999998777777899999999999999999988774 444444556677776665554322 23333 Q ss_pred HHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc-cc-hHHHHHHHHHHHHHH Q lcl|Aclame:pro 232 RSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-QS-SIQQISGMYASALNR 309 (392) Q Consensus 232 ~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-~~-~~~~~~~~~~~~l~p 309 (392) +.+ .++|+++++++|++|++++++++|+|++|++++++++||++|||||++||+.+++ ++ .+++...|++++|.| T Consensus 231 ~~~---~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~s~~e~~~~~f~~~~l~P 307 (409) T protein:vir:96 231 QYY---EENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLP 307 (409) T ss_pred HHh---hcCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHH Confidence 333 4678999999999999999999999999999999999999999999999975443 23 456678999999999 Q ss_pred HHHHHHHHHHHHhhh--------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcccccc-cCCC Q lcl|Aclame:pro 310 YLRPAISELEYKLSD--------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAP-ENTN 380 (392) Q Consensus 310 ~l~~i~~~l~~~l~~--------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~-~~~~ 380 (392) ++..|+++|+++|++ +++||...+++.|.+++++.++.++++|++|+||+|++++..+++..|.... -|+. T Consensus 308 ~~~~ie~~l~~~Ll~~~~~~~g~~i~fd~~~ll~~d~~~~~e~~~~~~~~G~~T~NE~R~~~g~~pi~ggD~~~~~~n~~ 387 (409) T protein:vir:96 308 IVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLY 387 (409) T ss_pred HHHHHHHHHHhhcCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCcceeeeccccc Confidence 999999999999963 3789999999999999999999999999999999999886555432222111 1221 Q ss_pred C----------CCCCCCCCCCC Q lcl|Aclame:pro 381 K----------KTTGQSNEPVP 392 (392) Q Consensus 381 ~----------~~~gd~~~p~p 392 (392) | ..||+.|+--= T Consensus 388 ~~~~~~~~~~~~~gG~~n~~e~ 409 (409) T protein:vir:96 388 PIDTPLELRKSLKGGDKNVNES 409 (409) T ss_pred ccccchhhcccccCCCCCcCCC Confidence 2 23332222111 No 55 >protein:vir:94426 Length: 409 # NCBI annotation: ORF009 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240003;genbank:gi:66395665;genbank:GeneID:5133086 Probab=100.00 E-value=1.5e-74 Score=425.25 Aligned_cols=378 Identities=15% Similarity=0.122 Sum_probs=288.6 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh- Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN- 79 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~- 79 (392) -.=+|+.++++.-.. ...........+ +..+.+.+...++.++|+++|+|++||++||++||+||++++++.. T Consensus 2 ~~~~~~~~~k~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~v~~~~a~~~~~v~~~i~~Ia~~ia~lp~~~~~~~~~ 75 (409) T protein:vir:94 2 AKENIVTRIKKKLID---NWIDQSASKLYD---FSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKV 75 (409) T ss_pred cccccchhhhhHHhh---hhhcCCcccccc---cccccCccccccchhhhhccHHHHHHHHHHHHhhhhCceeEeecccc Confidence 122344444442111 111111111111 1223334455688899999999999999999999999999987543 Q ss_pred ------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCc Q lcl|Aclame:pro 80 ------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPK 153 (392) Q Consensus 80 ------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~ 153 (392) +.++.+||++||+++||+.++.+++++||+|+++.|+.+|+|++|+|++|+.|++..+.+++.++|.++..+ T Consensus 76 ~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~~-- 153 (409) T protein:vir:94 76 VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAAT-- 153 (409) T ss_pred cchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEcCC-- Confidence 235679999999999999999999999999999999999999999999999999999888888876665443 Q ss_pred ceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHH--HHHHH Q lcl|Aclame:pro 154 IEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKD--KASRS 231 (392) Q Consensus 154 ~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~--~~~~~ 231 (392) +..+.+++++|||+|++++.+..+|+||+..++..+....+++++. ++.++..++++++.++...+++.+ ++.+. T Consensus 154 -g~~~~~~~~dvih~r~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~l~~e~~~~~~~~~~ 230 (409) T protein:vir:94 154 -GNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKYGSNVGKEKRQQVLEDFK 230 (409) T ss_pred -ceEEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCeeEEecCCCCCHHHHHHHHHHHH Confidence 4567899999999998877777899999999999999999998874 555555567777777665554432 23333 Q ss_pred HHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc-cch-HHHHHHHHHHHHHH Q lcl|Aclame:pro 232 RSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-QSS-IQQISGMYASALNR 309 (392) Q Consensus 232 ~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-~~~-~~~~~~~~~~~l~p 309 (392) +.+ .++|+++++++|++|++++.+++|+||+|.+++++++||++|||||++||+.+++ +++ +++...|++.+|.| T Consensus 231 ~~~---~~~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~sn~e~~~~~f~~~~l~P 307 (409) T protein:vir:94 231 QYY---EENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELNRFYLQHTLLP 307 (409) T ss_pred HHh---hcCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHH Confidence 333 3678899999999999999999999999999999999999999999999975543 244 56688999999999 Q ss_pred HHHHHHHHHHHHhhh--------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcccccc-cCCC Q lcl|Aclame:pro 310 YLRPAISELEYKLSD--------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAP-ENTN 380 (392) Q Consensus 310 ~l~~i~~~l~~~l~~--------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~-~~~~ 380 (392) +++.|+++|+++|++ +++||...+++.|.+++++.++.++++|++|+||+|++++..+++..|.+.. -|+. T Consensus 308 ~~~~ie~~ln~~Ll~~~~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~~~n~~ 387 (409) T protein:vir:94 308 IVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLY 387 (409) T ss_pred HHHHHHHHHHHhhCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeEeeccccc Confidence 999999999999963 3789999999999999999999999999999999999885554432222211 1111 Q ss_pred ----------CCCCCCCCCCCC Q lcl|Aclame:pro 381 ----------KKTTGQSNEPVP 392 (392) Q Consensus 381 ----------~~~~gd~~~p~p 392 (392) ...||+.|.--= T Consensus 388 ~~~~~~~~~~~~kGG~~n~~e~ 409 (409) T protein:vir:94 388 PIDTPLELRKSLKGGDKNVNES 409 (409) T ss_pred ccccchhhcccccCCCCCcCCC Confidence 123332221111 No 56 >protein:vir:101647 Length: 460 # NCBI annotation: phage portal protein # Family: family:all:26542 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112492;genbank:gi:53793592;uniprot:Q5ZGG1;genbank:GeneID:3101755 Probab=100.00 E-value=3.7e-74 Score=423.17 Aligned_cols=382 Identities=11% Similarity=0.096 Sum_probs=282.4 Q ss_pred hhhhhcccccccccccccccccCcchhhhhh-hcc--CCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchhh- Q lcl|Aclame:pro 5 ILNFINQTNDPPEAGSVQSYFPDGNDAQIME-SLL--GDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKNQ- 80 (392) Q Consensus 5 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~- 80 (392) ++|++.+..+...... ..+.+.+. ..+. .+. +.++..++.++++++|+|++||++||++||+||++++++..+ T Consensus 1 ~~~~~~~~~~~~~~~~--~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~a~~~~~v~~~v~~ia~~iA~lp~~v~~~~~~g 77 (460) T protein:vir:10 1 MANRIIRALRELTGLD--NKFNDAFI-KYIGQTFTKYDNNGKTYLEQGYNINPDVYSCISQMAAKTVAVPYTIKVVKDTK 77 (460) T ss_pred CchhHHHHHhhhhccC--CCchHHHH-HhhccccCCCccchhhhhHHHHhcchHHHHHHHHHHHhhhhCceEEEeccCCc Confidence 4455544332211111 11111110 1111 111 224566888999999999999999999999999999875432 Q ss_pred --------------------------------------hhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEeccc----C Q lcl|Aclame:pro 81 --------------------------------------GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNA----N 118 (392) Q Consensus 81 --------------------------------------~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~----~ 118 (392) .++.+||++||+++||+.++.+++++||||++++|+. . T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~~~~~ 157 (460) T protein:vir:10 78 AYQQLNNLNISTKGLYSFTQSLQKNRLDTKAFSETEKAFPLESPNPTQTWADIYSLYKTYMRLNGNCYFYLMSPDDGINA 157 (460) T ss_pred cchhhhhhhhhhhhhHHHHHHhhcchhhhcccchhHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCccC Confidence 2577899999999999999999999999999999964 4 Q ss_pred CceeEEEEeccccceeeecCCCceEEEEEE---ecCCcceeeEEEecceEEEecCCCcc-----ccccCCCHHHHHHHHH Q lcl|Aclame:pro 119 GADMKWEYLRPSQVNTYYFEYENGMYYNIT---FDDPKIEPILQAPQSDLIHMKLLSID-----GGKTGISPLYSLRRES 190 (392) Q Consensus 119 G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~vih~~~~~~~-----~~~~G~s~l~~~~~~i 190 (392) |++.+|+|++|+.|++..+.++...++.+. +....++....+++++|||+|++++. +..+|+||+..++..+ T Consensus 158 G~~~~L~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~evih~r~~~~~~~~~~~~~~G~sp~~~~~~~i 237 (460) T protein:vir:10 158 GVPSQMYVLPAHLIKIVLKDDINLLSTDSPIKSYMLIQGDQFIEFNEDEVIHTKYANPNFDLQGSHLYGMSPIRAILRNI 237 (460) T ss_pred ceeEEEEEEcCceEEEEEcCCCceeeeeeeeeEEEEecCceeEEecccceEEEecCCCCcccccCccccccHHHHHHHHH Confidence 799999999999999999887765544322 12223456789999999999987654 3568999999999999 Q ss_pred HHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH--HHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHH Q lcl|Aclame:pro 191 KIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD--KDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQT 268 (392) Q Consensus 191 ~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~ 268 (392) ..+.+++++..++|+||+.|+++++.++..++++ +.++.+.+.+.|..|+|++++|++|++|+++++++.|+||+|.+ T Consensus 238 ~~~~~~~~~~~~~f~ng~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~ 317 (460) T protein:vir:10 238 NSQNSTIDNNVKTMQNGGVFGFIHGGSTGLTQPQADSLKQRLTEMDKSPDRLSQIAGASGEIAFTKISLNTDELKPFDYL 317 (460) T ss_pred HHHHHHHHHHHHHHhcCCCcceeeecCCCCCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhHHHHHHHH Confidence 9999999999999999999999999888766654 33456777788889999999999999999999999999999999 Q ss_pred HHHHHHHHHHhcccHHHcCCcccc---cch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------hccchhhhhhc Q lcl|Aclame:pro 269 DWTSKQYAKVYGLPDSYIGGQGDQ---QSS-IQQISGMYASALNRYLRPAISELEYKLSDH--------ISVNMRPAIDP 336 (392) Q Consensus 269 ~~~~~~Ia~~fgVP~~~lg~~~~~---~~~-~~~~~~~~~~~l~p~l~~i~~~l~~~l~~~--------~~~d~~~~~~~ 336 (392) ++++++||++|||||++||+.+.+ +++ +++...|++.+|.|++..|+++|+++|++. ++||...+.. T Consensus 318 ~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~kl~~~~~~~~~~~i~~d~~~l~~- 396 (460) T protein:vir:10 318 KYDQKAICNALGWSDKLLNNNEGGGLNTGNLEEERKRVVTDNIQPDLVILKQAFDKKFIKRFKGYENAVIEWDISELPE- 396 (460) T ss_pred HHHHHHHHHHhCCCHHHhCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCceEEeecchhhh- Confidence 999999999999999999975432 233 456789999999999999999999999764 3455443311 Q ss_pred ChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCC-C-cc-cccccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 337 LGDNYLSTISTATRWGALAENQATFVLQEAGYI-P-KD-LPAPENTNKKTTGQSNEPVP 392 (392) Q Consensus 337 ~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~-~-~e-~~~~~~~~~~~~gd~~~p~p 392 (392) .....+....++++|++|+||+|++++..+.+ + .| ....-|+-|+.... ++..+ T Consensus 397 -l~~d~~~~~~~~~~g~~T~NE~R~~~g~~pi~~~~gD~~~~~~n~~~~~~~~-~~~~~ 453 (460) T protein:vir:10 397 -MQTDMVAMASWLNTIPVTPNEIRIAMKYETLNQDGMDIVFMPSNKVRIDDVS-NNLID 453 (460) T ss_pred -HHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCCCeeeecccccchhhcc-cccCC Confidence 11223445668899999999999987433331 1 11 11111222222111 11111 No 57 >protein:vir:80134 Length: 403 # NCBI annotation: Phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425602;genbank:gi:155042935;genbank:GeneID:5469563 Probab=100.00 E-value=3.6e-73 Score=417.72 Aligned_cols=364 Identities=12% Similarity=0.125 Sum_probs=280.3 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhh-cchHHHHHHHHHHHhhhhCceeeecchh-- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAAL-RNSDLFSIILQLSSDLAIVKINAEKKKN-- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al-~~~~v~~~i~~ia~~ia~lp~~~~~~~~-- 79 (392) |||||||+++.......... + +....+.....++....+ .+|+|++||++||++||++|++++++.. T Consensus 1 Mg~~~~f~~k~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~V~~~I~~ia~~iA~~p~~~~~~~~~g 70 (403) T protein:vir:80 1 MGLFNFFRRKTRSEPTNAIS-W---------FLTQEAYDTLAIPGYTRLSDNPEVRMAVHKIAELISSMTIHLMQNTDNG 70 (403) T ss_pred Ccccccccccccccccchhh-h---------hcccccccccccchhhhhhhhHHHHHHHHHHHHhhhhCceEEEEecCCc Confidence 99999998864332111111 0 000111112223333334 5899999999999999999999986532 Q ss_pred ---------hhhcccCCccCCHHHHHHHHHHHHHH--hCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEE Q lcl|Aclame:pro 80 ---------QGIIDNPSTNANKHGFWQSMFAQLLL--GGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNIT 148 (392) Q Consensus 80 ---------~~~~~~PN~~~t~~~f~~~~~~~l~l--~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~ 148 (392) ..++.+||++||+++||+.++.++++ +||||+++.++..|++++|||++|+.|++..+.++..+++ T Consensus 71 ~~~~~~~~~~lL~~~PN~~~t~~~f~~~~v~~~ll~~~Gna~i~~~~~~~g~~~~L~~l~p~~v~~~~~~~g~~~~y--- 147 (403) T protein:vir:80 71 DIRIKNELSRKIDINPYSLMTRKAWMYNIVYTMLLDGEGNSVVFPKYTTSGLIDELIPLAPSKVSFVDTDTGYQIWY--- 147 (403) T ss_pred eeecCChHHHHHhccCCcCCCHHHHHHHHHHHHhhcCCccEEEEEEEcCCCcEEEEEEEcCCeeEEEEcCCceEEEE--- Confidence 23567999999999999999999998 4889999999999999999999999999988876644332 Q ss_pred ecCCcceeeEEEecceEEEecC-CCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCch--HH Q lcl|Aclame:pro 149 FDDPKIEPILQAPQSDLIHMKL-LSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLS--DK 225 (392) Q Consensus 149 ~~~~~~~~~~~~~~~~vih~~~-~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~--~~ 225 (392) . ...++.++|||++. ..+.+.++|+||+..++..+....+++++..++|+||++|++++++++...++ ++ T Consensus 148 -~------~~~~~~~eiih~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~~~~~~~~ 220 (403) T protein:vir:80 148 -Q------GKAYNYDEVLHFIVNPDPEKPYMGRGYRVVLKDIVNNLKQATTTKKSFMSGKYMPSLIVKVDAATAELSSEE 220 (403) T ss_pred -e------ecccchhhEEEEeccCCCcCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCChHHHHH Confidence 1 13578999999984 45666778999999999999999999999999999999999999998865544 34 Q ss_pred HHHHHHHHHhccccCCceeeccCC-ceEEecc-CChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHH Q lcl|Aclame:pro 226 DKASRSRSFMKRSRSGGPVVLDDL-EEFTALE-IKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMY 303 (392) Q Consensus 226 ~~~~~~~~~~~~~~~g~~~vl~~g-~~~~~l~-~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~ 303 (392) .++.+.+.+.+..++|++++++.+ .++.++. ++++|+|++|.+++++.+||++|||||++||..+ .+.++...|+ T Consensus 221 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~---~~~~~~~~f~ 297 (403) T protein:vir:80 221 GRNAVFKKYLEASEAGQPWIIPAELLDVEQVKPLSLKDLAIHETVELDKRTVAGIFGVPAFLLGVGK---YDKDEYNNFI 297 (403) T ss_pred HHHHHHHHHhhhhhcCCeeeecccccccceeccCCHHHHHHHHHHHHhHHHHHHHhCCCHHHcCCCC---ccHHHHHHHH Confidence 556677888899999999998765 4566554 5789999999999999999999999999998632 2234556799 Q ss_pred HHHHHHHHHHHHHHHHHHhhh----hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcc-cccccC Q lcl|Aclame:pro 304 ASALNRYLRPAISELEYKLSD----HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKD-LPAPEN 378 (392) Q Consensus 304 ~~~l~p~l~~i~~~l~~~l~~----~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e-~~~~~~ 378 (392) +.+|.|+++.|+++|+++|++ +++||...+++.|.+++++.+..++++|++|+||+|++++..+++..| +...-+ T Consensus 298 ~~~l~P~~~~ie~~l~~kll~~~~~~~~f~~~~ll~~d~~~~~~~~~~~~~~Gi~t~NE~R~~~gl~p~~ggd~~~~~~n 377 (403) T protein:vir:80 298 NSTILPIAKGIEQELTRKLLISPDLYFKFNPRSLYAYDLKELAEVGSNMYVRGLMEGNEVRDWLGLSPKEGLSELVILEN 377 (403) T ss_pred HHHHHHHHHHHHHHHHHhccCCCCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeeccc Confidence 999999999999999999974 378999999999999999999999999999999999987544433212 111111 Q ss_pred CCCC---------CCC------CCCC Q lcl|Aclame:pro 379 TNKK---------TTG------QSNE 389 (392) Q Consensus 379 ~~~~---------~~g------d~~~ 389 (392) ..|+ .+| +.++ T Consensus 378 ~~pl~~~~~~~~~k~ge~~~~~~~~~ 403 (403) T protein:vir:80 378 YIPLDKIGDQNKLKGGEKGGADGQTD 403 (403) T ss_pred ccchhhccchhhccCCCCCCCCCCCC Confidence 1111 111 1111 No 58 >protein:vir:104259 Length: 403 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006980;genbank:gi:46401881;genbank:GeneID:2777676 Probab=100.00 E-value=1.1e-71 Score=409.60 Aligned_cols=363 Identities=12% Similarity=0.111 Sum_probs=284.6 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecch---- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKK---- 78 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~---- 78 (392) |||+||+..+..+-.+. .....+ .+. ........+.+.++++++|++||++||++||+||++++++. T Consensus 1 mg~~~~~~~~~~~~~~~-~~~~~~-~~~-------~~~~~~~~t~~~~~~~~~v~~cv~~Ia~~ia~~p~~v~~~~~~~~ 71 (403) T protein:vir:10 1 MGFKSWITEKLNPGQRI-IRDMEP-VSH-------RTNRKPFTTGQAYSKIEILNRTANMVIDSAAECSYTVGDKYNIVT 71 (403) T ss_pred Ccchhhhhhccchhhhh-hhcccc-ccc-------ccCCcccccHHHHHHHHHHHHHHHHHHHHHhhCceeEeecccccc Confidence 99999998765543221 111111 110 01112234668889999999999999999999999997542 Q ss_pred ----------hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEE Q lcl|Aclame:pro 79 ----------NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNIT 148 (392) Q Consensus 79 ----------~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~ 148 (392) .+.++.+||++||+++||+.++.+++++||||+++.+ ..+++++++.|++..+.++ .++ .+. T Consensus 72 ~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gnayi~~~~------~~l~~l~~~~~~v~~~~~~-~~~-~~~ 143 (403) T protein:vir:10 72 YANGVKTKTLDTLLNVRPNPFMDISTFRRLVVTDLLFEGCAYIYWDG------TSLYHVPAALMQVEADANK-FIK-KFI 143 (403) T ss_pred cccccccchHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEeC------ceeEeecCcceEEEEcCCc-eEE-EEE Confidence 1345678999999999999999999999999998753 3689999999999876543 332 222 Q ss_pred ecCCcceeeEEEecceEEEecCCC----ccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH Q lcl|Aclame:pro 149 FDDPKIEPILQAPQSDLIHMKLLS----IDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD 224 (392) Q Consensus 149 ~~~~~~~~~~~~~~~~vih~~~~~----~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~ 224 (392) +.+ ...+..++|+|++..+ ..+..+|+||+.+++..+..+.+++++..++|+||++|++++++++..++++ T Consensus 144 ~~~-----~~~~~~~eiih~~~~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~e~ 218 (403) T protein:vir:10 144 FNN-----QINYRVDEIIFIKDNSYVCGTNSQISGQSRVATVIDSLEKRSKMLNFKEKFLDNGTVIGLILETDEILNKKL 218 (403) T ss_pred ecC-----ceeecccceEEecccccccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHHH Confidence 222 2467889999999654 2355789999999999999999999999999999999999999998776664 Q ss_pred --HHHHHHHHHHhccccCCceeeccCCceEEeccC--ChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHH Q lcl|Aclame:pro 225 --KDKASRSRSFMKRSRSGGPVVLDDLEEFTALEI--KSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQIS 300 (392) Q Consensus 225 --~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~--~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~ 300 (392) +.++.+.+.+.|..|+|++++|++|++|++++. ++.|+||+|.+++++++||++|||||++||..+ ..+.+++.+ T Consensus 219 ~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~-~sn~e~~~~ 297 (403) T protein:vir:10 219 RERKQEELQLDYNPSTGQSSVLILDGGMKAKPYSQISSFKDLDFKEDIEGFNKSICLAFGVPQVLLDGGN-NANIRPNIE 297 (403) T ss_pred HHHHHHHHHHHhCCcccCcceeecCCCceeEEecccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCC-CcCHHHHHH Confidence 335567778889999999999999999999985 578999999999999999999999999998643 334556789 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccchhhh--hhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccccccc- Q lcl|Aclame:pro 301 GMYASALNRYLRPAISELEYKLSDHISVNMRPA--IDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAPE- 377 (392) Q Consensus 301 ~~~~~~l~p~l~~i~~~l~~~l~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~~- 377 (392) .|++.||.|++++|+++|+++|..++.+|...+ ++.|.+++++.+..++++|++|+||+|+++ |++|.+.+..+ T Consensus 298 ~f~~~tl~P~~~~ie~~l~~~L~~~~~~d~~~~~~l~~D~~~~~~~~~~~~~~G~lT~NE~R~~~---gl~pi~~~~~d~ 374 (403) T protein:vir:10 298 LFYYMTIIPMLNKLTSSLTFFFGYKITPNTKEVAALTPDKEAEAKHLTSLVNNGIITGNEARSEL---NLEPLDDEQMNK 374 (403) T ss_pred HHHHHHHHHHHHHHHHHHHHhcCceeeeccchhhhcccCHHHHHHHHHHHHhCCCcCHHHHHHHh---CCCCCCcccccc Confidence 999999999999999999999999999988754 788999999999999999999999999987 55543322221 Q ss_pred -----CC----CCCCCCCCCCCCC Q lcl|Aclame:pro 378 -----NT----NKKTTGQSNEPVP 392 (392) Q Consensus 378 -----~~----~~~~~gd~~~p~p 392 (392) +. .+..+|+.++| + T Consensus 375 ~~~p~n~~~~~~~~~~~e~~~~-~ 397 (403) T protein:vir:10 375 IRIPANVAGSATGVSGQEGGRP-K 397 (403) T ss_pred cccccccccccccCCCCcCCCC-C Confidence 11 13344444443 3 No 59 >protein:vir:95378 Length: 406 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764474;genbank:gi:115334628;genbank:GeneID:5179265 Probab=100.00 E-value=3.8e-71 Score=406.68 Aligned_cols=371 Identities=12% Similarity=0.068 Sum_probs=288.9 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) |||||+|++........... .....+....+.....++...++++|+|++||++||++||++|++++++.. T Consensus 1 Mg~f~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~ 74 (406) T protein:vir:95 1 MGLFDRWRRTKRKSKIRADT------GYVGLFMSGEDVSFLVPGYVRLSDNPEVRMAVHKIADLISSMTIYLMQNTEDGD 74 (406) T ss_pred Ccchhhhccccccccccccc------hhhhhhccCcccCccccCHHHHhhcHHHHHHHHHHHHhhccCceEEEEecCCcc Confidence 99999987654433221111 111122222333455677888999999999999999999999999986542 Q ss_pred --------hhhcccCCccCCHHHHHHHHHHHHHHhCCe--eEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEe Q lcl|Aclame:pro 80 --------QGIIDNPSTNANKHGFWQSMFAQLLLGGEA--FAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITF 149 (392) Q Consensus 80 --------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a--~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~ 149 (392) ..++.+||++||+++||+.++.+++++|++ |+++.|+.+|++++|||++|++|++..+.++. .+.+ T Consensus 75 ~~~~~~~~~~l~~~PN~~~t~~~f~~~~~~~~ll~g~g~a~~~~~~~~~g~~~~l~~i~~~~v~~~~~~~~~----~~~~ 150 (406) T protein:vir:95 75 IRIRNELSRKIDITPYSLMTRKSWMYNIVYTMLLDGEGNSVVFPKYTADGLIDELVPLTPSKVNFLDTPDGY----QVLY 150 (406) T ss_pred eeecchHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCceEEEEEEECCCCcEEEEEEEcCceeEEEEcCCeE----EEEe Confidence 346789999999999999999999999765 55677999999999999999999999887642 2222 Q ss_pred cCCcceeeEEEecceEEEecCC-CccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH--HH Q lcl|Aclame:pro 150 DDPKIEPILQAPQSDLIHMKLL-SIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD--KD 226 (392) Q Consensus 150 ~~~~~~~~~~~~~~~vih~~~~-~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~--~~ 226 (392) + ...+++++|||++++ .+.+..+|+||+..+...+..+.+++++..++|+||++|++++++++...+++ +. T Consensus 151 ~------~~~~~~~evih~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~l~~e~~~~~ 224 (406) T protein:vir:95 151 G------GQTFNYDEVLHFIYNPDPERPYIGRGYRVVLKDIADNLKQATATKKSFMSGKYMPSLIVKVDAATAELSSEEG 224 (406) T ss_pred c------cEEEchhHEEEeeccCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHHHHHHH Confidence 2 146899999999963 45556789999999999999999999999999999999999999998766554 44 Q ss_pred HHHHHHHHhccccCCceeeccC-CceEEecc-CChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHH Q lcl|Aclame:pro 227 KASRSRSFMKRSRSGGPVVLDD-LEEFTALE-IKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYA 304 (392) Q Consensus 227 ~~~~~~~~~~~~~~g~~~vl~~-g~~~~~l~-~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~ 304 (392) ++++.+.+.+..|+|+++|++. |.+++++. ++++|+|++|.+++++++||++|||||++||..+ ++.++...|++ T Consensus 225 ~~~~~~~~~g~~n~~~~~v~~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~---~~~~~~~~~~~ 301 (406) T protein:vir:95 225 RNAVFKKYLQATEAGQPWIIPAELLEVEQVKPLSLKDIAINEAVELDKRTVAGMFGVPAFLLGIGE---FNRDEYNNFIN 301 (406) T ss_pred HHHHHHHhccccccCCceeecCCCccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCC---chHHHHHHHHH Confidence 5677788899999999888764 56777765 6899999999999999999999999999998642 34567789999 Q ss_pred HHHHHHHHHHHHHHHHHhhh----hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccccc-ccCC Q lcl|Aclame:pro 305 SALNRYLRPAISELEYKLSD----HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPA-PENT 379 (392) Q Consensus 305 ~~l~p~l~~i~~~l~~~l~~----~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~-~~~~ 379 (392) ++|.|+++.|+++|+++|+. +++||...+++.|.+++++.+..++++|++|+||+|++++..+.+..|... .-|. T Consensus 302 ~~l~P~~~~ie~~l~~~l~~~~~~~~~fd~~~l~~~d~~~~~~~~~~l~~~G~~t~NE~R~~~gl~p~~~gd~~~~~~n~ 381 (406) T protein:vir:95 302 STILPIAKGIEQELTRKLLISPDLYFKFNPRSLYAYDLKELAEVGSNMYVRGIMEGNEVRDWLGLSPKEGLSELVILENY 381 (406) T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccCc Confidence 99999999999999999974 478999999999999999999999999999999999988544433211111 1122 Q ss_pred CCC---------CCCCCCC-CCC Q lcl|Aclame:pro 380 NKK---------TTGQSNE-PVP 392 (392) Q Consensus 380 ~~~---------~~gd~~~-p~p 392 (392) .++ +||+.+. --+ T Consensus 382 ~~~~~~~~~~~~k~g~~~~~~~~ 404 (406) T protein:vir:95 382 IPLDKIGDQSKLKGGDNSGADGQ 404 (406) T ss_pred cchhhcccccccCCCCCCCCCCC Confidence 111 1111100 000 No 60 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=100.00 E-value=2.7e-71 Score=407.47 Aligned_cols=386 Identities=11% Similarity=0.071 Sum_probs=274.1 Q ss_pred Ccch---------hhhhhcccccccccccccccccCcchhhhhhhcc---CCCCcccchhhhhcchHHHHHHHHHHHhhh Q lcl|Aclame:pro 1 MILP---------ILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLL---GDNNEWVSARAALRNSDLFSIILQLSSDLA 68 (392) Q Consensus 1 m~Mg---------~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~al~~~~v~~~i~~ia~~ia 68 (392) ++-. |...|+++..+.... ..............+. ...+..++.+.++++++|++||++||++|| T Consensus 63 ~~~~~~~~~kk~~i~~pfkkk~~~~~~d---~f~~s~es~s~vtsls~pdaf~~vnVs~~~AlknsaV~scI~~IA~sIA 139 (945) T protein:vir:10 63 IIFRKNQVLKKEKIIVPYNHQEPPFKFN---LFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLT 139 (945) T ss_pred eeehhhhHHHhhcccccccccccchhhh---hhhccCccceecccccCccceeeehhhhhhhhccHHHHHHHHHHHhhhc Confidence 1111 111111111110000 0000000000000110 111345778899999999999999999999 Q ss_pred hCceeeecchh-----------------hhhcccCCccCCHHH----HHHHHHHHHHHhCCeeEEEecccCCceeEEEEe Q lcl|Aclame:pro 69 IVKINAEKKKN-----------------QGIIDNPSTNANKHG----FWQSMFAQLLLGGEAFAYRWRNANGADMKWEYL 127 (392) Q Consensus 69 ~lp~~~~~~~~-----------------~~~~~~PN~~~t~~~----f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l 127 (392) ++|++++++.. ..++.+||++||+++ |++.++.+++++||+|+++.|+.+|++++|+|+ T Consensus 140 sLPlklYrr~edG~~~~~~kk~~~~hpL~~LL~rPNp~mT~~eFwqsFl~~Lv~dLLL~GNAYieIiRd~~G~ii~L~pL 219 (945) T protein:vir:10 140 SKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPV 219 (945) T ss_pred cCceEEEEecccCcccccccccccchHHHHHHhCCCcccChhHHHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEE Confidence 99999986422 235679999999998 556688999999999999999999999999999 Q ss_pred ccccceeeecCCCceEEEEEEecCCcceeeEEEecceEE-EecCCCccccc--cCCCHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 128 RPSQVNTYYFEYENGMYYNITFDDPKIEPILQAPQSDLI-HMKLLSIDGGK--TGISPLYSLRRESKIQRASDRLTISSL 204 (392) Q Consensus 128 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi-h~~~~~~~~~~--~G~s~l~~~~~~i~~~~~~~~~~~~~~ 204 (392) +|++|++..+.+++..+++.+..++ +....++++++| |++++++++.. +|+||+.+++..+..+.++++++.++| T Consensus 220 dPs~Vti~~ddDG~~~y~Yv~~idG--~~~~~v~a~DvIlhirn~s~DG~~~GyGlSPIeaa~~aI~~alAaek~aar~F 297 (945) T protein:vir:10 220 DGTTIKPILSEDTGIVVGYVQEVDG--AIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYY 297 (945) T ss_pred CCcceEEEEcCCCcEEEEEEEecCC--ceEEEecCCceEEEeccCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHH Confidence 9999999999888776654444332 233466677755 66777777643 699999999999999999999999999 Q ss_pred H-ccCCcceEEeeCCCC----------CchH--HHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHH Q lcl|Aclame:pro 205 N-SSLNVPGVLTVKGGG----------LLSD--KDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWT 271 (392) Q Consensus 205 ~-ng~~~~~i~~~~~~~----------~~~~--~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~ 271 (392) . ||++|+|+++++... +.++ +.++.|.+.+.| .+.|+++++++|++|++++.++.|+||+|+++++ T Consensus 298 skNGa~PsGILsvkg~~~~d~k~~~~LseEq~erlKe~wee~~sG-~NnG~piVLdeGmef~pLs~s~~DaQfLEsrkfs 376 (945) T protein:vir:10 298 RKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMG-DYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFV 376 (945) T ss_pred HhCCCccceEEEecCccccccccccccCHHHHHHHHHHHHHHhCC-cccccceecCCCceEEEccCChhHHHHHHHHHHH Confidence 5 788999999986432 2222 233445555555 5678889999999999999999999999999999 Q ss_pred HHHHHHHhcccHHHcCCcccc-cch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhccchhhhhhcChHHHHHH Q lcl|Aclame:pro 272 SKQYAKVYGLPDSYIGGQGDQ-QSS-IQQISGMYASALNRYLRPAISELEYKLSD-----HISVNMRPAIDPLGDNYLST 344 (392) Q Consensus 272 ~~~Ia~~fgVP~~~lg~~~~~-~~~-~~~~~~~~~~~l~p~l~~i~~~l~~~l~~-----~~~~d~~~~~~~~~~~~~~~ 344 (392) +++||++|||||++||..++. .++ .++...|++.+|.|++.+|+++||++|.+ ++.+++......+.+++++. T Consensus 377 ~eeIArAFGVPP~lLG~~e~st~SNiEqq~~~Fv~~tL~Pil~~IEqeLNrkLl~~~eg~~i~fdFd~ldl~D~ksraEa 456 (945) T protein:vir:10 377 ARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNI 456 (945) T ss_pred HHHHHHHhCCCHHHcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCceeEEEecchhccCHHHHHHH Confidence 999999999999999975443 334 45678999999999999999999999864 24555555556678899999 Q ss_pred HHHHHhCCccCHHHHHHHHHhCCCCCccccccc--CCCCCC-------C--------CCCCCCCC Q lcl|Aclame:pro 345 ISTATRWGALAENQATFVLQEAGYIPKDLPAPE--NTNKKT-------T--------GQSNEPVP 392 (392) Q Consensus 345 ~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~~--~~~~~~-------~--------gd~~~p~p 392 (392) +..++++|++|+||+|++++..+++..|.+... +..|.. + ...++|.| T Consensus 457 l~kli~sGiLTiNEvRe~lGLpPIeGGD~lli~~nn~~P~d~~~ka~~ga~p~q~aq~~~dqp~~ 521 (945) T protein:vir:10 457 IQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQ 521 (945) T ss_pred HHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccccccccCCCCcccccCCCCCCCC Confidence 999999999999999998855554433332110 110100 0 01122222 No 61 >protein:vir:960 Length: 413 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076614;genbank:gi:13095722;genbank:GeneID:920279 Probab=100.00 E-value=4.8e-71 Score=406.08 Aligned_cols=375 Identities=14% Similarity=0.129 Sum_probs=285.6 Q ss_pred Ccchhhhhhccccccccccc--ccccccCcchhhhhhhccCCCCcccch-hhhhcchHHHHHHHHHHHhhhhCceeeecc Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGS--VQSYFPDGNDAQIMESLLGDNNEWVSA-RAALRNSDLFSIILQLSSDLAIVKINAEKK 77 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~al~~~~v~~~i~~ia~~ia~lp~~~~~~ 77 (392) |-|+||++-++.....+... ...+.+.......+..+. .+. ..++++++|++||++||++||++|++++++ T Consensus 11 ~~m~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~v~~cI~~ia~~ia~~~~~~~~~ 84 (413) T protein:vir:96 11 KNLKFFNNKRSPTEESKAKDEIPKAPQVVMTLPNFFKELI------SDGYTKLSDSPEVRMAVDCIADLVSNMTIQLMQN 84 (413) T ss_pred hcCCccccCCCcchhhhhhccccccccccccchhhHhhhc------cchhHHHhhchHHHHHHHHHHHhhccCceEEEEe Confidence 77776654322211111111 111111111112222211 112 236789999999999999999999999865 Q ss_pred hh-----------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCC-ceeEEEEeccccceeeecCCCceEEE Q lcl|Aclame:pro 78 KN-----------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANG-ADMKWEYLRPSQVNTYYFEYENGMYY 145 (392) Q Consensus 78 ~~-----------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G-~~~~l~~l~~~~v~~~~~~~~~~~~~ 145 (392) .. ..++.+||++||+++||+.++.+++++||+|++++|+.+| .+++|||++|++|++..+. +.+++ T Consensus 85 ~~~~~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~r~~~g~~~~~L~~l~~~~v~~~~~~--~~~~y 162 (413) T protein:vir:96 85 GETGDKRIKNDLSRVVDIEPNKYLSRKTFIQWLVRSMLLEGNGNAVVKPQVSGDKIIGLTPISPYKVTFNVSD--DDLDY 162 (413) T ss_pred cCCCccccccHHHHHHHhccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCceEEEEEecCceeEEEEcC--CeEEE Confidence 32 2356899999999999999999999999999999999887 5789999999999998764 44455 Q ss_pred EEEecCCcceeeEEEecceEEEecC-CCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH Q lcl|Aclame:pro 146 NITFDDPKIEPILQAPQSDLIHMKL-LSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD 224 (392) Q Consensus 146 ~~~~~~~~~~~~~~~~~~~vih~~~-~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~ 224 (392) .++..+ .++++++|||+++ ++.++.++|.||+.++...+..+.+++++..++|+||++|+|++++++..++++ T Consensus 163 ~~~~~~------~~~~~~evih~k~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~e~ 236 (413) T protein:vir:96 163 SITFDN------KEYDPSTLLHFVLNPSIERPFIGTGYKVALKDIVGNLKQASVTKKGFMASEYMPNLIVSVDSDSDELS 236 (413) T ss_pred EEeecC------cEEchhhEEEEeccCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHH Confidence 554433 3678999999995 456677899999999999999999999999999999999999999998766553 Q ss_pred --HHHHHHHHHHhccccCCceeeccCCc-eEEecc-CChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHH Q lcl|Aclame:pro 225 --KDKASRSRSFMKRSRSGGPVVLDDLE-EFTALE-IKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQIS 300 (392) Q Consensus 225 --~~~~~~~~~~~~~~~~g~~~vl~~g~-~~~~l~-~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~ 300 (392) +.++++.+.+.|..|+|+++++++|. +++++. .+++|+|++|.+++++++||++|||||.+||.. .++.++.. T Consensus 237 ~~~~~~~~~~~~~g~~n~g~~~vl~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~---~~~~~~~~ 313 (413) T protein:vir:96 237 DEEGRENFEEMYLKRKEAGKPWIIPEGMVNVQQIKPLTLNDLAINDAVTLDKKTVAGIFGVPAFLLGVG---TYNKDEFN 313 (413) T ss_pred HHHHHHHHHHHhcCccccCceeeecCCcccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCC---cchHHHHH Confidence 44566777888889999999997665 556664 689999999999999999999999999999863 23466788 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh---hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcc-cccc Q lcl|Aclame:pro 301 GMYASALNRYLRPAISELEYKLSD---HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKD-LPAP 376 (392) Q Consensus 301 ~~~~~~l~p~l~~i~~~l~~~l~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e-~~~~ 376 (392) .|++.+|.|+++.|+++|+++|++ +++||...+++.|.+++++.+..++++|++|+||+|++++..+.+..| .-.. T Consensus 314 ~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~p~~~gd~~~~~ 393 (413) T protein:vir:96 314 NFINTKIMSIAQVIQQTYNKLIVEEDMYFSLNPRSLYNYSLTEMVSAGAQMTQLNALRRNEFRNWVGMPPDAEMDDLLVL 393 (413) T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeec Confidence 999999999999999999999965 589999999999999999999999999999999999987544433212 1112 Q ss_pred cCCCCCCCCCCCCCCC Q lcl|Aclame:pro 377 ENTNKKTTGQSNEPVP 392 (392) Q Consensus 377 ~~~~~~~~gd~~~p~p 392 (392) -|..|+.....+++.+ T Consensus 394 ~n~~~~~~~~~~~~~~ 409 (413) T protein:vir:96 394 ENYLQQKDLVNQKKLI 409 (413) T ss_pred ccccchhhcccccCCC Confidence 2333332222333333 No 62 >protein:vir:6210 Length: 394 # NCBI annotation: Portal protein # Family: family:all:10882 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852590;genbank:gi:31415850;genbank:GeneID:1489208 Probab=100.00 E-value=3.2e-71 Score=407.08 Aligned_cols=357 Identities=12% Similarity=0.072 Sum_probs=277.2 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) ||||+||+++...... .. ......+....+.++..++.+.++++++|++||++||++||+||+++++++. T Consensus 1 MGl~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~vt~~~al~~~~v~~~i~~Ia~~iA~lp~~v~~~~g~~~ 73 (394) T protein:vir:62 1 MGLRDRFSNYLFKKAE--KR-----GYLDNVLGKSIRYSGVYVTDSNILQSSDVYELLQDISNQMVLADIVVEDEFGNEI 73 (394) T ss_pred CchhhhhhhhccCCCC--ch-----hhhhhhhhcccccCccccChhhhhccHHHHHHHHHHHHhhcccceEEEcCCCccc Confidence 9999999765332211 11 1122334444455677899999999999999999999999999999997643 Q ss_pred -----hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCcc Q lcl|Aclame:pro 80 -----QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKI 154 (392) Q Consensus 80 -----~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~ 154 (392) ..++.+||++||+++||+.++.+++++||+|+++.++..+.+ ..+.+..++.+. +.+... T Consensus 74 ~~~~~~~Ll~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~~~~~~--------~~~~~~~~~~~~---~~~~~~---- 138 (394) T protein:vir:62 74 KDDIALQILRNPNNYLTQSEFIKLMTNTYLLEGETFPILNGAQIHLA--------SNVFTELDDNLV---EHFNIG---- 138 (394) T ss_pred chhhHHHHhccCCCCCCHHHHHHHHHHHHHhcCCeEEEEecceeecc--------ccceEEECCceE---EEEeeC---- Confidence 346889999999999999999999999999999986654432 345555554432 222211 Q ss_pred eeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH----HHHHHH Q lcl|Aclame:pro 155 EPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD----KDKASR 230 (392) Q Consensus 155 ~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~----~~~~~~ 230 (392) .+++++++|+|+|+++.++ .+|+||+..+...|..+.++++++.++|+||++|++++++++....++ +.++.+ T Consensus 139 --~~~~~~~eiih~r~~~~d~-~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~~~~~~~ 215 (394) T protein:vir:62 139 --GHEIPPCMIRHVKNIGADH-LRGKGILDLGRDTLEGVMSAEKTLTDKYKKGGLLTFLLNLDAHINPQNGAQSKLINAI 215 (394) T ss_pred --CEEechhheEEecCcCCCC-ccccChHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCCCCCcCHHHHHHHHHHH Confidence 2579999999999987765 689999999999999999999999999999999999999988765443 334567 Q ss_pred HHHHhccccCCceeeccCCc--eEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHHHHHH Q lcl|Aclame:pro 231 SRSFMKRSRSGGPVVLDDLE--EFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALN 308 (392) Q Consensus 231 ~~~~~~~~~~g~~~vl~~g~--~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~ 308 (392) .+.+.+..|+|+++|++.|. ++++++.++.|+|++|++++++++||++|||||.+||+.+ ..+.+++...|++.+|. T Consensus 216 ~~~~~g~~n~g~~~vl~~g~~~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~-~sn~e~~~~~~~~~~l~ 294 (394) T protein:vir:62 216 LDQLESIDEARSVKMIPLGKGYSIDTLKSPLDDEKTLAYLNVYKKDLGKFLGINVDTYTELI-KEDIEKAMMYIHNKAVR 294 (394) T ss_pred HHHhccccccCceeEeeCCCceeEEecCCCcchHHHHHHHHHHHHHHHHHhCCCHHHcCCCC-CcCHHHHHHHHHHHHHH Confidence 77888889999999987765 6668899999999999999999999999999999999753 23445678999999999 Q ss_pred HHHHHHHHHHHHHhhh-------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccccccc---- Q lcl|Aclame:pro 309 RYLRPAISELEYKLSD-------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAPE---- 377 (392) Q Consensus 309 p~l~~i~~~l~~~l~~-------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~~---- 377 (392) |++.+|+++|+++|+. +++||...+++ ...+++.+..++++|++|+||+|++++..+++ .+..+ T Consensus 295 P~~~~ie~~l~~kll~~~~~~~~~~~fd~~~~~~--~~~~~~~~~~~~~~g~~T~NE~R~~~gl~p~~---~~~gd~~~~ 369 (394) T protein:vir:62 295 PIMKNFEDHLSLLFYAQNSGKRIKFKINILDFVT--YSNKTNIGYNLVRTAITSPDNVADMLGFPKQN---TKESQAIYI 369 (394) T ss_pred HHHHHHHHHHhhhhcCccccCceEEEechhhhcC--HHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC---CCCCCeeec Confidence 9999999999999864 35666665554 44677889999999999999999988444332 12111 Q ss_pred --C----------CCCCCCCCCCCC Q lcl|Aclame:pro 378 --N----------TNKKTTGQSNEP 390 (392) Q Consensus 378 --~----------~~~~~~gd~~~p 390 (392) + -.+.+||+.||- T Consensus 370 ~~n~~~~~~~~~~~~~~kgge~~en 394 (394) T protein:vir:62 370 SNDVTEIGKKEATDGSLGGGEENEN 394 (394) T ss_pred ccccccccccccccccCCCCCCCCC Confidence 1 123456665555 No 63 >protein:vir:4194 Length: 540 # NCBI annotation: putative portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071819;genbank:gi:11863102;genbank:GeneID:1257604 Probab=100.00 E-value=4.8e-67 Score=384.17 Aligned_cols=383 Identities=11% Similarity=-0.007 Sum_probs=272.1 Q ss_pred hhhhhcccccccccccc--cccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchhhhh Q lcl|Aclame:pro 5 ILNFINQTNDPPEAGSV--QSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKNQGI 82 (392) Q Consensus 5 ~~n~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~ 82 (392) +||+.-........... ...........+++++...-+...-.+.+..+++|++||++||++||++|++++.+..... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~La~~~~~n~~v~scI~~ia~~ia~~~~~i~~~~~~~~ 80 (540) T protein:vir:41 1 MFNYHLSIKSLEKYRAIKGDTDSQALKEDRFEEYVEPKVHPLVLLSLLQVNPYHASACSIKANDILRTGYLIDGDDGGVE 80 (540) T ss_pred CCCcccChhhccchhhhhccccccccccCCCCccccCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCceEecCccchh Confidence 55543221110000000 0011111111112222111111111244456789999999999999999999998887777 Q ss_pred cccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCc-------eEEEEEEec----- Q lcl|Aclame:pro 83 IDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYEN-------GMYYNITFD----- 150 (392) Q Consensus 83 ~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~-------~~~~~~~~~----- 150 (392) ...||++||+++|++.++.+++++||||++++|+.+|++++|+|++|++|++..+..+. ..+++..+. T Consensus 81 ~~lpN~~~t~~~f~~~~v~dlll~Gnayv~i~r~~~G~~~~L~~i~~~~V~v~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 160 (540) T protein:vir:41 81 ELLRACRPSFEFILLQALEDLQVFNYCTLEVVRDDQGEPVRLDYIPAHTVRVHRDGSRYMQTWDGIHVTYFKDYRYEGEV 160 (540) T ss_pred hhccCCCCCHHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCcceEEeEcCceeEeeecCceeeeeeccccccee Confidence 67799999999999999999999999999999999999999999999999987654321 111111111 Q ss_pred -CCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH----- Q lcl|Aclame:pro 151 -DPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD----- 224 (392) Q Consensus 151 -~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~----- 224 (392) ...+...+.+++++|||+|.+++.+..+|+||+..+...+..+.++++++.++|+||++|+|++++++....++ T Consensus 161 ~~~~g~~~~~~~~~eViHir~~~~~~~~~G~Spi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~giL~~~g~l~~e~~~~~~ 240 (540) T protein:vir:41 161 NPDNGEDQDGVGANEIIFIHLPSPICSYYGVPRYLSAAPSILAMQKIDEYNYAFFDNYTIPSYVITVTGEFEDEMELGSD 240 (540) T ss_pred eccccccceeecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCcccCchhccchH Confidence 11223456799999999999888888899999999999999999999999999999999999999987544332 Q ss_pred ---HHHHHH----HHHHhc-cccCCceeecc------CCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcc Q lcl|Aclame:pro 225 ---KDKASR----SRSFMK-RSRSGGPVVLD------DLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQG 290 (392) Q Consensus 225 ---~~~~~~----~~~~~~-~~~~g~~~vl~------~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~ 290 (392) +.++.+ ...+.+ ..|+|+++||+ +|++|++++.+++|+||+|++++++++||++|||||++||..+ T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~nag~~~vLe~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~eIa~afgVPp~~lG~~~ 320 (540) T protein:vir:41 241 GEPTGRTVLQGLIEDNFKYLKEAPHTPLVFSIPGGDTVEVTFTPLNTSQKELSFREYAAEKKHDIAAAHMIDPYRLGITD 320 (540) T ss_pred HHHHHHHHHHHHHHHHhccccccccceEEEecCCCcccceeEEecccchhHHHHHHHHHHHHHHHHHHhCCCHHHcCccc Confidence 112222 233333 35889999984 7999999999999999999999999999999999999999753 Q ss_pred cc---cch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------hccchhhhhhcChHHHHHHHHHHHhCCccCHHHHH Q lcl|Aclame:pro 291 DQ---QSS-IQQISGMYASALNRYLRPAISELEYKLSDH------ISVNMRPAIDPLGDNYLSTISTATRWGALAENQAT 360 (392) Q Consensus 291 ~~---~~~-~~~~~~~~~~~l~p~l~~i~~~l~~~l~~~------~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R 360 (392) .+ .++ .++...|+++||.|+++.|+++|+++|.++ ++||...+++.| .++.+..++++|++|+||+| T Consensus 321 ~~~~n~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~L~~~~~~~~~i~f~~~~ll~~D---~~~~~~~lv~~G~lT~NE~R 397 (540) T protein:vir:41 321 VGPLGGNFAEVARRTYYESVVRPQQEIVSSVLTDFIQLKLDPGARFVFNEEILMESE---FVHNYALLVQCGVLTPSEVR 397 (540) T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCceEEEecchhhcchH---HHHHHHHHHhCCCCCHHHHH Confidence 32 233 456788999999999999999999998654 566766666654 55667889999999999999 Q ss_pred HHHHhCCCCCccccccc--CCCC--CCCCCCC----CCCC Q lcl|Aclame:pro 361 FVLQEAGYIPKDLPAPE--NTNK--KTTGQSN----EPVP 392 (392) Q Consensus 361 ~~l~~~g~~~~e~~~~~--~~~~--~~~gd~~----~p~p 392 (392) +.| .|++|.+.+.+. +... ..+++.+ +|-+ T Consensus 398 e~L--~g~e~gdd~~l~p~n~~~~~~~~~~~~~~~~~~~~ 435 (540) T protein:vir:41 398 EKL--FGLDGGPDMFMVPSSIGKSAMKRQKRNYEKNQINE 435 (540) T ss_pred HHh--CcCcCCCcccccccccccccccccccccCCCCccc Confidence 865 466664433222 2111 1111111 1111 No 64 >protein:vir:95965 Length: 385 # NCBI annotation: ORF011 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239800;genbank:gi:66395461;genbank:GeneID:5132882 Probab=100.00 E-value=4.4e-66 Score=378.87 Aligned_cols=351 Identities=15% Similarity=0.158 Sum_probs=266.0 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchhh-- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKNQ-- 80 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~-- 80 (392) ||||+++.++...+... .+. .....++.+.|+++++|++||++||++||++|++++++... T Consensus 1 Mg~f~~~f~~~~~~~~~---------~~~--------~~~~~~~~~~a~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~ 63 (385) T protein:vir:95 1 MGLFDSVFKRHSELSWM---------YDL--------EFLQDKSKKAYLKQIALNTVVEMVARTISQSEFRVMKNNTKEK 63 (385) T ss_pred CchhhhhhccCcccccc---------cch--------hhhhccchhhhhhhHHHHHHHHHHHHHHcccceeeeecCcccc Confidence 99998876653222110 000 11224567889999999999999999999999999875432 Q ss_pred -----hhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCcce Q lcl|Aclame:pro 81 -----GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIE 155 (392) Q Consensus 81 -----~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 155 (392) .++.+||++||+++||+.++.+++++||||+++.++. +.+..++++.+..+....+. ++...+.+ .+ T Consensus 64 ~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~i~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~~ 135 (385) T protein:vir:95 64 GTLYYLLNVRPNRNQNAVDFWQKFIFKLIMDNEVLVVKNDEG-HFFVADDFEKEDELGLYSHR-----FTNVLVND--FE 135 (385) T ss_pred chHHHHHhcccCcCCCHHHHHHHHHHHHhhcCceEEEEecCC-Ceeecccccccccccccccc-----ceeeeecc--cc Confidence 3457999999999999999999999999999887664 45556666666666554332 22222222 23 Q ss_pred eeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHH----HHHHHH Q lcl|Aclame:pro 156 PILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDK----DKASRS 231 (392) Q Consensus 156 ~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~----~~~~~~ 231 (392) ....+++++|||+++++.++..+|.||+..+...+....++.. +++.|+++++++.....+++ .++.+. T Consensus 136 ~~~~~~~~eiih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~-------~~~~~~g~l~~~~~~~~~~e~~~~~~~~~~ 208 (385) T protein:vir:95 136 FKRVFTMDDVIYLKYNNQKLDAFSLGLFEDYGEIFGRMIDLQM-------LNNQIRGILKVDATKFYNKEKQKELQAYID 208 (385) T ss_pred eeeeeccccEEEecCCCCCcccccchHHHHHHHHHHHHHHHHH-------hcCCCceEEEeCCccCCCHHHHHHHHHHHH Confidence 3467999999999999988888999999999999876655432 33458899998764333332 233445 Q ss_pred HHHhcccc-CCceeeccCCceEEeccC------ChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHH Q lcl|Aclame:pro 232 RSFMKRSR-SGGPVVLDDLEEFTALEI------KSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYA 304 (392) Q Consensus 232 ~~~~~~~~-~g~~~vl~~g~~~~~l~~------~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~ 304 (392) +.+.+..+ .++++++++|++|++++. ++.|+||+|++++++++||++|||||++|++ ++++.+++..+|++ T Consensus 209 ~~~~g~~~~~~~i~~l~~g~~~~~l~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~--~~sn~e~~~~~~~~ 286 (385) T protein:vir:95 209 TLFDAFQNNTIAVVPLTEGLAYEEHSNRGAAQSAQQFSELNELKKTVLTDVARMIGVPPSLVLG--EMADLEKTIESYLQ 286 (385) T ss_pred HHhhhhhhcCCceEEcCCCceeEeecccccccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhcC--CCcCHHHHHHHHHH Confidence 55566544 456889999999999985 6679999999999999999999999999974 34455677899999 Q ss_pred HHHHHHHHHHHHHHHHHhhh-------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccccccc Q lcl|Aclame:pro 305 SALNRYLRPAISELEYKLSD-------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAPE 377 (392) Q Consensus 305 ~~l~p~l~~i~~~l~~~l~~-------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~~ 377 (392) ++|.|++.+|+++|+++|++ +++||...+++.|.+++++.+.+++++|++|+||+|+++ |++|.+.+.++ T Consensus 287 ~~l~P~~~~ie~~l~~~L~~~~~~~~~~~~fd~~~l~~~D~~~~~~~~~~~~~~g~lt~NE~R~~~---g~~p~~~~~gd 363 (385) T protein:vir:95 287 FCINPLLRKIEAELNSKFFYQDEYLNDDMHIKVVGIDKRDPLKLSEAIDKLVASGTFTRNQVRIMT---GEEPADDPELD 363 (385) T ss_pred HHHHHHHHHHHHHHHhhcCChhhcccceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh---CCCCCCCCCCc Confidence 99999999999999999965 478999999999999999999999999999999999987 55543322222 Q ss_pred ------CC---CCCCCCCCCCC Q lcl|Aclame:pro 378 ------NT---NKKTTGQSNEP 390 (392) Q Consensus 378 ------~~---~~~~~gd~~~p 390 (392) |+ ...+||+.++- T Consensus 364 ~~~~~~n~~~~~~~kgge~~~e 385 (385) T protein:vir:95 364 KFIITKNLQSADAFKGGESNEE 385 (385) T ss_pred eeeecccceecccccCCCCCCC Confidence 22 23457766666 No 65 >protein:vir:9359 Length: 348 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803337;genbank:gi:29028648;genbank:GeneID:1258089 Probab=100.00 E-value=1.4e-65 Score=376.18 Aligned_cols=318 Identities=15% Similarity=0.138 Sum_probs=255.1 Q ss_pred hhhCceeeecchh-------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCC Q lcl|Aclame:pro 67 LAIVKINAEKKKN-------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEY 139 (392) Q Consensus 67 ia~lp~~~~~~~~-------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~ 139 (392) ||+||++++++.. +.++.+||++||+++||+.++.+++++||||++++|+..|+|++|+|++|+.|++..+.+ T Consensus 1 ia~lp~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~l~~~~v~~~~~~~ 80 (348) T protein:vir:93 1 MASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ 80 (348) T ss_pred CcccceEeEecCcCcccHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCCceEEEEeCC Confidence 9999999987542 234579999999999999999999999999999999999999999999999999999988 Q ss_pred CceEEEEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCC Q lcl|Aclame:pro 140 ENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGG 219 (392) Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~ 219 (392) ++.++|.+...+ +..+.+++++|||+|++++.+..+|+||+..++..+..+.+++++. +..++..++++++.++. T Consensus 81 ~~~~~y~~~~~~---g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~ 155 (348) T protein:vir:93 81 SRELYYSIHAAT---GNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKYGSN 155 (348) T ss_pred CcEEEEEEEcCC---CeEEEEccccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHH--HHhcCCCceeEEecCCC Confidence 888877665443 4567899999999999877788899999999999999999998875 34444445677777766 Q ss_pred CCchHHH--HHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc-c-ch Q lcl|Aclame:pro 220 GLLSDKD--KASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-Q-SS 295 (392) Q Consensus 220 ~~~~~~~--~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-~-~~ 295 (392) .++++.+ ++++.+.+ .|+|+++++++|++|++++++++|+||+|++++++++||++|||||.+||+.++. + +. T Consensus 156 l~~e~~~~~~~~~~~~~---~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~ 232 (348) T protein:vir:93 156 VSTEKRQQVLEDFKQYY---EENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKN 232 (348) T ss_pred CCHHHHHHHHHHHHHHh---hcCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccH Confidence 5554322 23333333 4678999999999999999999999999999999999999999999999975442 2 44 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCC Q lcl|Aclame:pro 296 IQQISGMYASALNRYLRPAISELEYKLSD--------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAG 367 (392) Q Consensus 296 ~~~~~~~~~~~l~p~l~~i~~~l~~~l~~--------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g 367 (392) +++.+.|++.||.|+++.|+++|+++|++ +++||...+++.|.+++++.+.+++++|++|+||+|++++..+ T Consensus 233 e~~~~~~~~~~l~P~~~~ie~~l~~~l~~~~~~~~g~~i~fd~~~l~~~d~~~~a~~~~~~~~~G~~T~NE~R~~~g~~p 312 (348) T protein:vir:93 233 EELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPP 312 (348) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCC Confidence 56788999999999999999999999964 3788999999999999999999999999999999999885555 Q ss_pred CCCcccccc-cCCCC----------CCCCCCCCCCC Q lcl|Aclame:pro 368 YIPKDLPAP-ENTNK----------KTTGQSNEPVP 392 (392) Q Consensus 368 ~~~~e~~~~-~~~~~----------~~~gd~~~p~p 392 (392) ++..|.+.. -|+.| ..||+.|.--= T Consensus 313 ~~ggD~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 348 (348) T protein:vir:93 313 VEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES 348 (348) T ss_pred CCCcCeEeecccccccccchhhcccccCCCCCcCCC Confidence 443222221 12211 22333221111 No 66 >protein:vir:80644 Length: 551 # NCBI annotation: gp23 # Family: family:all:2446 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468463;genbank:gi:157325038;genbank:GeneID:5601615 Probab=100.00 E-value=2.4e-65 Score=374.87 Aligned_cols=387 Identities=10% Similarity=0.011 Sum_probs=265.6 Q ss_pred Ccchhhhhhccccccc-------------------------------cccccccccc-CcchhhhhhhccCCCCcc---- Q lcl|Aclame:pro 1 MILPILNFINQTNDPP-------------------------------EAGSVQSYFP-DGNDAQIMESLLGDNNEW---- 44 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~-------------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---- 44 (392) -.||||..|+...... +.....++.. .....+.+.. ...... T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~a~~~~~~~~~~~~~~~~~--r~~~~~~~~l 80 (551) T protein:vir:80 3 NKLGLFESIRLVGVNKSDAVKHIEVDDNYSIAIQQREQEQISKAMNNKEVAYSQPVIGSMSANPGFKT--KPSIRNNQDL 80 (551) T ss_pred hhhhhHHHhhhccCChhhcccccccccceeeecccccHHHHHHhhccCcceeecccccceecCccccc--CccccChhHH Confidence 6899998777311100 0000000000 0000000000 000000 Q ss_pred -cchhhhhcchHHHHHHHHHHHhhhhC-----------ceeeecch---------------hhhhcccCCcc-----CCH Q lcl|Aclame:pro 45 -VSARAALRNSDLFSIILQLSSDLAIV-----------KINAEKKK---------------NQGIIDNPSTN-----ANK 92 (392) Q Consensus 45 -~~~~~al~~~~v~~~i~~ia~~ia~l-----------p~~~~~~~---------------~~~~~~~PN~~-----~t~ 92 (392) ...+.+..+|.|++||+.||++||++ ++.+.-++ ...++.+||++ +|+ T Consensus 81 ~~~~~~~~~npiv~~~I~~ia~~IA~~~~~~~~~~~g~~~~i~~kd~~~~~~~~~~~~~~~i~~~l~~pn~~~~p~~~s~ 160 (551) T protein:vir:80 81 HGVLKKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSF 160 (551) T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHhhhhhhhhhhcCCCCceEEecccCcccChhHHHHHHHHHHHHHhcCCCCCCccchH Confidence 01123445799999999999999984 34332111 12356788887 488 Q ss_pred HHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceE---EEEEEecCCcceeeEEEecceEEEec Q lcl|Aclame:pro 93 HGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGM---YYNITFDDPKIEPILQAPQSDLIHMK 169 (392) Q Consensus 93 ~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~vih~~ 169 (392) .+|++.++.+++++||+|++++|+.+|+|++|+||+|++|++..+.++... .++++..+ ++..+.+++++|||++ T Consensus 161 ~~f~~~lv~dlll~Gnay~~i~rd~~G~~~~L~~l~p~~V~v~~~~~g~~~~~~~~y~~~~~--g~~~~~~~~~eiiH~~ 238 (551) T protein:vir:80 161 SSFVKKIVRDTYMYDQVNFEKVFNRNQSMVRFVAKDPTTIFFATTADGKIPDNGNRFVQVID--QKIVATFNAREMAFAV 238 (551) T ss_pred HHHHHHHHHHHHhcCCEEEEEEECCCCcEEEEEEeCCceeEEEECCccccccCceEEEEEeC--CcEEEEEcccceEEec Confidence 999999999999999999999999999999999999999999988876432 12222222 2345689999999999 Q ss_pred CCCcc---ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCC--chH--HHHHHHHHHHhccccCCc Q lcl|Aclame:pro 170 LLSID---GGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGL--LSD--KDKASRSRSFMKRSRSGG 242 (392) Q Consensus 170 ~~~~~---~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~--~~~--~~~~~~~~~~~~~~~~g~ 242 (392) +++.. +..+|+||+.+++..|..+.++++++.++|+||++|+|+|+++.... +++ +.++.|...+.|..|+|+ T Consensus 239 ~n~~~~~~~~~~G~spi~~a~~~i~~~~a~~~~~~~~f~Ng~~p~giL~~~~~~~lt~e~~~~lk~~~~~~~~G~~nag~ 318 (551) T protein:vir:80 239 RNPRSDIYATGYGYPELEIALKQFIAHENTEAFNDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQ 318 (551) T ss_pred ccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEcCCCCCCHHHHHHHHHHHHHHhcCccccCc Confidence 76543 34679999999999999999999999999999999999999876533 222 335566777889999999 Q ss_pred eeec-cCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc-----------cchH-HHHHHHHHHHHHH Q lcl|Aclame:pro 243 PVVL-DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-----------QSSI-QQISGMYASALNR 309 (392) Q Consensus 243 ~~vl-~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-----------~~~~-~~~~~~~~~~l~p 309 (392) ++++ ++|++|+++++++.|+||+|++++++++||++|||||++||..+++ .++. ++...|++.+|.| T Consensus 319 ~~vl~~~g~~~~~l~~~~~D~qfle~~~~~~~~Ia~aFgVPp~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~f~~~tL~P 398 (551) T protein:vir:80 319 IPVVSAEDVKFVNMTPSARDMEFEKWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQP 398 (551) T ss_pred cccccCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhcCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHH Confidence 7665 6899999999999999999999999999999999999999964432 2334 4567899999999 Q ss_pred HHHHHHHHHHHHhhhhh----ccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCC-CCcccccc-cCCC--- Q lcl|Aclame:pro 310 YLRPAISELEYKLSDHI----SVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGY-IPKDLPAP-ENTN--- 380 (392) Q Consensus 310 ~l~~i~~~l~~~l~~~~----~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~-~~~e~~~~-~~~~--- 380 (392) ++..|+++|+++|++.+ .|++..+...+..+.+. +..++..|++|+||+|++++..+. +..|.+.. -++. T Consensus 399 ~~~~ie~~ln~~L~~~~~~~~~f~f~~~~~~~~~~~~~-~~~~~~~g~lT~NE~R~~~gl~P~~egGD~~~~~~~~~~~~ 477 (551) T protein:vir:80 399 LLGFIEDFINKHIVAEFGDKYTFQFVGGDIKSELESVK-ILAEKAKVAMTVNEVRKELNLPGDVIGGDIPLNGVIVQRIG 477 (551) T ss_pred HHHHHHHHHHhhhccccCCceEEEeeccChhhHHHHHH-HHHHHhcCCcCHHHHHHHhCCCCCCCCCceeeccccccccc Confidence 99999999999998653 33333333334344444 445777899999999998754432 22222210 0111 Q ss_pred ---------------------CCCCCCCCCCCC Q lcl|Aclame:pro 381 ---------------------KKTTGQSNEPVP 392 (392) Q Consensus 381 ---------------------~~~~gd~~~p~p 392 (392) ...+++.+.+.| T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (551) T protein:vir:80 478 QLMQQEQFEHEKQQSNLQMLQEQTGNRVSTDVE 510 (551) T ss_pred ccccccCcchhhhhhccccccCcCCCCCCCCCC Confidence 111122222222 No 67 >protein:vir:4156 Length: 542 # NCBI annotation: portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046965;genbank:gi:9630535;genbank:GeneID:1261709 Probab=100.00 E-value=5.3e-65 Score=372.98 Aligned_cols=378 Identities=11% Similarity=-0.025 Sum_probs=268.6 Q ss_pred hhhh---hcccccccccccccccccCcchhhhhhhccCCCCcccchh----hhhcchHHHHHHHHHHHhhhhCceeeecc Q lcl|Aclame:pro 5 ILNF---INQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSAR----AALRNSDLFSIILQLSSDLAIVKINAEKK 77 (392) Q Consensus 5 ~~n~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~al~~~~v~~~i~~ia~~ia~lp~~~~~~ 77 (392) +||. |+....+.................+.+++ .-.++.. .+..+++|++||++||++||++|++++.+ T Consensus 1 ~~~~~~~i~s~~~~~~i~~~~~~s~~~~~~~~~~~~----~pp~~~~~la~l~~~n~~v~scI~~ia~~IA~l~~~~~~~ 76 (542) T protein:vir:41 1 MFNYHLSIRSLEKYKAIKREEVESQALGETRFEEYV----EPKVNPLVLLSLLQVNPYHASACSIKANDIIRTGYILEGD 76 (542) T ss_pred CccccccccccccchhhhhccccccccccccCCccc----cCCCCHHHHHHHHhhcHHHHHHHHHHHHHHhhCceeeecc Confidence 5652 33322221111111100000000000111 1123333 23347899999999999999999999876 Q ss_pred hhhh-hcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceE-------EEEEEe Q lcl|Aclame:pro 78 KNQG-IIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGM-------YYNITF 149 (392) Q Consensus 78 ~~~~-~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~-------~~~~~~ 149 (392) +... ....||++||+++|++.++.+++++||||++++|+.+|++++|+|++|++|++..+...... .+...+ T Consensus 77 ~~~~l~~~lpN~~~s~~~f~~~~v~~lll~Gnayi~i~rd~~G~~~~L~~l~~~~v~v~~d~~~~~~~~~~~~~~~~~~y 156 (542) T protein:vir:41 77 DEGVVDEFIRACKPSFEYVLLRALEDLQVFNYCTLEVVRDDRGDPIRFEYIPSHTIRVHKDGSRYRQTWDGVNITHFKDY 156 (542) T ss_pred cchhhhhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCcceEEEEcCCeeEeeecCCcceeEEee Confidence 5543 34569999999999999999999999999999999999999999999999999876543111 111111 Q ss_pred cC------CcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCc- Q lcl|Aclame:pro 150 DD------PKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLL- 222 (392) Q Consensus 150 ~~------~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~- 222 (392) .. ..+.....+++++|||+|++++.+..+|+||+..+...+....+++++..++|+||++|++|+++++.... T Consensus 157 ~~~~~~~~~~g~~~~~~~~~eIiHir~~~~~~~~~Glspi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~gIL~~~~~l~de 236 (542) T protein:vir:41 157 RYEGEINPETGEDQDSVGANELVFIHIPSPVCSYYGVPRYVSAAPAILAMQKIDEYNYAFFDNYTIPSYVITVTGEFEDE 236 (542) T ss_pred cccccccccccccccccCcccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCccccc Confidence 11 11123346889999999998877778999999999999999999999999999999999999999764321 Q ss_pred -------hH----HHHHHHHHHHhcc-ccCCceeecc------CCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHH Q lcl|Aclame:pro 223 -------SD----KDKASRSRSFMKR-SRSGGPVVLD------DLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDS 284 (392) Q Consensus 223 -------~~----~~~~~~~~~~~~~-~~~g~~~vl~------~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~ 284 (392) .+ +.++.+.+.+.+. .|+|+++||+ +|++|++++.+++|+||+|.+++++++||++|||||. T Consensus 237 ~~~~~~~~~e~~~~lk~~~~~~~~g~~~n~gk~~vL~~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~~Ia~afgVPp~ 316 (542) T protein:vir:41 237 LEEDPDGNPTGRTVIQALIEDNFKHLKEAPHTPLVFSIPGGDTVKVTFTPLNTSQKELSFREYAAEKKYDIAAAHMIDPY 316 (542) T ss_pred cccccccCHHHHHHHHHHHHHHHhhhhcccCceeEeeccCCcccceeEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHH Confidence 11 2234455555554 6788999984 7999999999999999999999999999999999999 Q ss_pred HcCCccccc---ch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------hccchhhhhhcChHHHHHHHHHHHhCCcc Q lcl|Aclame:pro 285 YIGGQGDQQ---SS-IQQISGMYASALNRYLRPAISELEYKLSDH------ISVNMRPAIDPLGDNYLSTISTATRWGAL 354 (392) Q Consensus 285 ~lg~~~~~~---~~-~~~~~~~~~~~l~p~l~~i~~~l~~~l~~~------~~~d~~~~~~~~~~~~~~~~~~~~~~g~~ 354 (392) +||..+.++ ++ +++...|++.+|.|+++.|+++|+++|.+. ++|+...+++.| .+..+..++++|++ T Consensus 317 ~lG~~~~~t~n~sn~Eq~~~~f~~~tL~P~~~~ie~~ln~~L~~~~~~~~~~~f~~~~ll~~d---~~~~~~~~v~~Gil 393 (542) T protein:vir:41 317 RLGIADTGPLGGNFAEVTRRTYYESVVRPQQNIISSILTDFFQVKFNPKTRFKFNDETLLESD---SVRNCALLVQSGVL 393 (542) T ss_pred HhCcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCceEEEecchhhcchH---HHHHHHHHHhCCCC Confidence 999754432 23 457889999999999999999999999754 455555555544 45667889999999 Q ss_pred CHHHHHHHHHhCCCCCcccccccCC----CCCCCCCCCCCCC Q lcl|Aclame:pro 355 AENQATFVLQEAGYIPKDLPAPENT----NKKTTGQSNEPVP 392 (392) Q Consensus 355 t~nE~R~~l~~~g~~~~e~~~~~~~----~~~~~gd~~~p~p 392 (392) |+||+|+.| .|++|.+.+.+... ..+.+++.+ +-+ T Consensus 394 T~NE~Re~L--~g~~pgdd~~l~p~~~~~~~~~~~~~n-~~~ 432 (542) T protein:vir:41 394 TPAEARERL--FGLDGGPDIFMVPSKGAAKSVKRQERN-YEK 432 (542) T ss_pred CHHHHHHhh--CCCCCCCccccccccccccccccCCcC-CCC Confidence 999999855 46666544332111 111112111 111 No 68 >protein:vir:100650 Length: 395 # NCBI annotation: 77ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958604;genbank:gi:41189523;genbank:GeneID:2743796 Probab=100.00 E-value=1.7e-64 Score=370.18 Aligned_cols=355 Identities=15% Similarity=0.111 Sum_probs=260.6 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) ||||++++++...... . .....+..++.++++++++|++||++||++||++|++++++.. T Consensus 1 Mg~f~~lf~~~~~~~~-----~------------~~~~~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~~ 63 (395) T protein:vir:10 1 MSILEKIFKTRKDITY-----M------------LDLDMIEDLSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGNRIQK 63 (395) T ss_pred CchhhhhhccCccccc-----c------------ccchhccccchhhhhhhHHHHHHHHHHHHhhccceeEeccCCcccc Confidence 9999987665332210 0 0112245678889999999999999999999999999987542 Q ss_pred ----hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCcce Q lcl|Aclame:pro 80 ----QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIE 155 (392) Q Consensus 80 ----~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 155 (392) ..++.+||++||+++||+.++.+|++.|++|+++.++. .++++++..+++...... .+..+..... + T Consensus 64 ~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~ 134 (395) T protein:vir:10 64 NDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSK-----ELLIADSFYREEYALYDD--IFKDVTVKDY--T 134 (395) T ss_pred chHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCC-----CeEecCCccceeEeecCc--ceeEEEEcCc--e Confidence 34567999999999999999999999999998776543 245555555554433221 2233333322 3 Q ss_pred eeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHH--HHHHHHHH Q lcl|Aclame:pro 156 PILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDK--DKASRSRS 233 (392) Q Consensus 156 ~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~--~~~~~~~~ 233 (392) ....+++++|||++++++.+..+|.||+..+...+....+ .|.+++.+++++++++....++. ..++..+. T Consensus 135 ~~~~~~~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~~-------~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~ 207 (395) T protein:vir:10 135 YQRTFTMQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMIG-------AQLKNYQIRGILKSASSAYDEKNIEKLQAFTNK 207 (395) T ss_pred eeeeeccccEEEEccCCCCcccccchHHHHHHHHHHHHHH-------HHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHH Confidence 3568999999999998888888999999999888765443 46688889999999876443332 22333444 Q ss_pred HhccccCCc--eeeccCCceEEeccCChhhH-----HHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHHHH Q lcl|Aclame:pro 234 FMKRSRSGG--PVVLDDLEEFTALEIKSNVA-----QLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASA 306 (392) Q Consensus 234 ~~~~~~~g~--~~vl~~g~~~~~l~~~~~d~-----~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~ 306 (392) +.+..++++ ++++++|++|++++.++.++ ||+|++++++++||++|||||++||+ ++++.+++..+|++++ T Consensus 208 ~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~--~~sn~e~~~~~~~~~~ 285 (395) T protein:vir:10 208 LFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYG--ETADLEKNTLVFEKFC 285 (395) T ss_pred HhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhcC--cccCHHHHHHHHHHHH Confidence 444444443 55689999999999988765 89999999999999999999999985 3445567889999999 Q ss_pred HHHHHHHHHHHHHHHhhh------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCC---ccccccc Q lcl|Aclame:pro 307 LNRYLRPAISELEYKLSD------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIP---KDLPAPE 377 (392) Q Consensus 307 l~p~l~~i~~~l~~~l~~------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~---~e~~~~~ 377 (392) |.|++..|+++|+++|++ .++||...+++.|.+++++.+..++++|++|+||+|++++..+++. ++.-..- T Consensus 286 l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~~ 365 (395) T protein:vir:10 286 LTPLLKKIQNELNAKLITQSMYLKDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLITK 365 (395) T ss_pred HHHHHHHHHHHHHHhhcChhhhcccceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecc Confidence 999999999999999964 3578888899999999999999999999999999999874333321 1111122 Q ss_pred CCCCCCCCCCCCCCC Q lcl|Aclame:pro 378 NTNKKTTGQSNEPVP 392 (392) Q Consensus 378 ~~~~~~~gd~~~p~p 392 (392) ++.++..+..++..+ T Consensus 366 n~~~~~~~~~~~~~~ 380 (395) T protein:vir:10 366 NYEKANSGENDEKEK 380 (395) T ss_pred ccccccccccccCcc Confidence 333433333333222 No 69 >protein:vir:9507 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835554;genbank:gi:30043953;genbank:GeneID:1260535 Probab=100.00 E-value=1.7e-64 Score=370.18 Aligned_cols=355 Identities=15% Similarity=0.111 Sum_probs=260.6 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) ||||++++++...... . .....+..++.++++++++|++||++||++||++|++++++.. T Consensus 1 Mg~f~~lf~~~~~~~~-----~------------~~~~~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~~ 63 (395) T protein:vir:95 1 MSILEKIFKTRKDITY-----M------------LDLDMIEDLSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGNRIQK 63 (395) T ss_pred CchhhhhhccCccccc-----c------------ccchhccccchhhhhhhHHHHHHHHHHHHhhccceeEeccCCcccc Confidence 9999987665332210 0 0112245678889999999999999999999999999987542 Q ss_pred ----hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCcce Q lcl|Aclame:pro 80 ----QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIE 155 (392) Q Consensus 80 ----~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 155 (392) ..++.+||++||+++||+.++.+|++.|++|+++.++. .++++++..+++...... .+..+..... + T Consensus 64 ~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~ 134 (395) T protein:vir:95 64 NDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSK-----ELLIADSFYREEYALYDD--IFKDVTVKDY--T 134 (395) T ss_pred chHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCC-----CeEecCCccceeEeecCc--ceeEEEEcCc--e Confidence 34567999999999999999999999999998776543 245555555554433221 2233333322 3 Q ss_pred eeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHH--HHHHHHHH Q lcl|Aclame:pro 156 PILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDK--DKASRSRS 233 (392) Q Consensus 156 ~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~--~~~~~~~~ 233 (392) ....+++++|||++++++.+..+|.||+..+...+....+ .|.+++.+++++++++....++. ..++..+. T Consensus 135 ~~~~~~~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~~-------~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~ 207 (395) T protein:vir:95 135 YQRTFTMQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMIG-------AQLKNYQIRGILKSASSAYDEKNIEKLQAFTNK 207 (395) T ss_pred eeeeeccccEEEEccCCCCcccccchHHHHHHHHHHHHHH-------HHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHH Confidence 3568999999999998888888999999999888765443 46688889999999876443332 22333444 Q ss_pred HhccccCCc--eeeccCCceEEeccCChhhH-----HHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHHHH Q lcl|Aclame:pro 234 FMKRSRSGG--PVVLDDLEEFTALEIKSNVA-----QLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASA 306 (392) Q Consensus 234 ~~~~~~~g~--~~vl~~g~~~~~l~~~~~d~-----~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~ 306 (392) +.+..++++ ++++++|++|++++.++.++ ||+|++++++++||++|||||++||+ ++++.+++..+|++++ T Consensus 208 ~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~--~~sn~e~~~~~~~~~~ 285 (395) T protein:vir:95 208 LFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYG--ETADLEKNTLVFEKFC 285 (395) T ss_pred HhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhcC--cccCHHHHHHHHHHHH Confidence 444444443 55689999999999988765 89999999999999999999999985 3445567889999999 Q ss_pred HHHHHHHHHHHHHHHhhh------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCC---ccccccc Q lcl|Aclame:pro 307 LNRYLRPAISELEYKLSD------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIP---KDLPAPE 377 (392) Q Consensus 307 l~p~l~~i~~~l~~~l~~------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~---~e~~~~~ 377 (392) |.|++..|+++|+++|++ .++||...+++.|.+++++.+..++++|++|+||+|++++..+++. ++.-..- T Consensus 286 l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~~ 365 (395) T protein:vir:95 286 LTPLLKKIQNELNAKLITQSMYLKDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLITK 365 (395) T ss_pred HHHHHHHHHHHHHHhhcChhhhcccceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecc Confidence 999999999999999964 3578888899999999999999999999999999999874333321 1111122 Q ss_pred CCCCCCCCCCCCCCC Q lcl|Aclame:pro 378 NTNKKTTGQSNEPVP 392 (392) Q Consensus 378 ~~~~~~~gd~~~p~p 392 (392) ++.++..+..++..+ T Consensus 366 n~~~~~~~~~~~~~~ 380 (395) T protein:vir:95 366 NYEKANSGENDEKEK 380 (395) T ss_pred ccccccccccccCcc Confidence 333433333333222 No 70 >protein:vir:101289 Length: 395 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908829;genbank:gi:118725093;genbank:GeneID:4555860 Probab=100.00 E-value=1.7e-64 Score=370.18 Aligned_cols=355 Identities=15% Similarity=0.111 Sum_probs=260.6 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) ||||++++++...... . .....+..++.++++++++|++||++||++||++|++++++.. T Consensus 1 Mg~f~~lf~~~~~~~~-----~------------~~~~~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~~ 63 (395) T protein:vir:10 1 MSILEKIFKTRKDITY-----M------------LDLDMIEDLSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGNRIQK 63 (395) T ss_pred CchhhhhhccCccccc-----c------------ccchhccccchhhhhhhHHHHHHHHHHHHhhccceeEeccCCcccc Confidence 9999987665332210 0 0112245678889999999999999999999999999987542 Q ss_pred ----hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCcce Q lcl|Aclame:pro 80 ----QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIE 155 (392) Q Consensus 80 ----~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 155 (392) ..++.+||++||+++||+.++.+|++.|++|+++.++. .++++++..+++...... .+..+..... + T Consensus 64 ~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~ 134 (395) T protein:vir:10 64 NDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSK-----ELLIADSFYREEYALYDD--IFKDVTVKDY--T 134 (395) T ss_pred chHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCC-----CeEecCCccceeEeecCc--ceeEEEEcCc--e Confidence 34567999999999999999999999999998776543 245555555554433221 2233333322 3 Q ss_pred eeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHH--HHHHHHHH Q lcl|Aclame:pro 156 PILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDK--DKASRSRS 233 (392) Q Consensus 156 ~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~--~~~~~~~~ 233 (392) ....+++++|||++++++.+..+|.||+..+...+....+ .|.+++.+++++++++....++. ..++..+. T Consensus 135 ~~~~~~~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~~-------~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~ 207 (395) T protein:vir:10 135 YQRTFTMQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMIG-------AQLKNYQIRGILKSASSAYDEKNIEKLQAFTNK 207 (395) T ss_pred eeeeeccccEEEEccCCCCcccccchHHHHHHHHHHHHHH-------HHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHH Confidence 3568999999999998888888999999999888765443 46688889999999876443332 22333444 Q ss_pred HhccccCCc--eeeccCCceEEeccCChhhH-----HHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHHHH Q lcl|Aclame:pro 234 FMKRSRSGG--PVVLDDLEEFTALEIKSNVA-----QLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASA 306 (392) Q Consensus 234 ~~~~~~~g~--~~vl~~g~~~~~l~~~~~d~-----~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~ 306 (392) +.+..++++ ++++++|++|++++.++.++ ||+|++++++++||++|||||++||+ ++++.+++..+|++++ T Consensus 208 ~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~--~~sn~e~~~~~~~~~~ 285 (395) T protein:vir:10 208 LFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYG--ETADLEKNTLVFEKFC 285 (395) T ss_pred HhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhcC--cccCHHHHHHHHHHHH Confidence 444444443 55689999999999988765 89999999999999999999999985 3445567889999999 Q ss_pred HHHHHHHHHHHHHHHhhh------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCC---ccccccc Q lcl|Aclame:pro 307 LNRYLRPAISELEYKLSD------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIP---KDLPAPE 377 (392) Q Consensus 307 l~p~l~~i~~~l~~~l~~------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~---~e~~~~~ 377 (392) |.|++..|+++|+++|++ .++||...+++.|.+++++.+..++++|++|+||+|++++..+++. ++.-..- T Consensus 286 l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~~ 365 (395) T protein:vir:10 286 LTPLLKKIQNELNAKLITQSMYLKDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLITK 365 (395) T ss_pred HHHHHHHHHHHHHHhhcChhhhcccceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecc Confidence 999999999999999964 3578888899999999999999999999999999999874333321 1111122 Q ss_pred CCCCCCCCCCCCCCC Q lcl|Aclame:pro 378 NTNKKTTGQSNEPVP 392 (392) Q Consensus 378 ~~~~~~~gd~~~p~p 392 (392) ++.++..+..++..+ T Consensus 366 n~~~~~~~~~~~~~~ 380 (395) T protein:vir:10 366 NYEKANSGENDEKEK 380 (395) T ss_pred ccccccccccccCcc Confidence 333433333333222 No 71 >protein:vir:78310 Length: 376 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468642;genbank:gi:157325220;genbank:GeneID:5601655 Probab=100.00 E-value=1e-64 Score=371.46 Aligned_cols=352 Identities=11% Similarity=0.039 Sum_probs=252.3 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) ||||+++.++....... .+ ......++.+.++++++|++||++||+++|++|++++++.. T Consensus 1 Mg~f~~l~~~~~~~~~~---------~~--------~~~~~~~~~~~~l~~~~v~~~i~~Ia~~ia~~p~~~~~~~~~~~ 63 (376) T protein:vir:78 1 MGFFSELFKRNKEIEWM---------WD--------LDFLEDKTTKVYLKKMALNTCVKHIARTIAKSDFRLKNGETSVR 63 (376) T ss_pred CchhhhhhccCCccccc---------cc--------hhhccccchhhhhhhHHHHHHHHHHHHhhcccceeecccccccc Confidence 99998766543221110 00 01123467889999999999999999999999999986542 Q ss_pred ----hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCcce Q lcl|Aclame:pro 80 ----QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIE 155 (392) Q Consensus 80 ----~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 155 (392) ..++.+||++||+++||+.++.+|+++||+|+++.|+..|.+.+++|+.+..+.... ++.+...+ .+ T Consensus 64 ~~l~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~~~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~--~~ 134 (376) T protein:vir:78 64 DKLYYKLNIRPNTDMSSSSFWEKVIYKLIYDNECLIVLSDTDDFLIADSYVRKEFAFFPDV-------FEGVTVKD--YR 134 (376) T ss_pred chHHHHHhhccccCCCHHHHHHHHHHHHhHcCcEEEEEEeCCCeeeccceeecccceeeee-------eeeeeeec--ce Confidence 345679999999999999999999999999999999999999999999887654322 22222222 12 Q ss_pred eeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHH-HHHccCCcceEEeeCCCCCchH--HHHHHHHH Q lcl|Aclame:pro 156 PILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTIS-SLNSSLNVPGVLTVKGGGLLSD--KDKASRSR 232 (392) Q Consensus 156 ~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~-~~~ng~~~~~i~~~~~~~~~~~--~~~~~~~~ 232 (392) ....+++++|+|+++....+...+.++...+...+. ..... .+.++.++.++++.++..++++ +.++.+.+ T Consensus 135 ~~~~~~~~evih~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 208 (376) T protein:vir:78 135 YNRNFSMDDVIFLEYGNERLSAFTDGMFEDYGELFG------KMIRAQMRNFQIRGAVNFKMAGVADKDKQTKLQEYIDK 208 (376) T ss_pred eeeeeccccEEEeccCCCCchhhhhHHHHHHHHHHH------HHHHHHHhcCCCceeEEEccCCCCCHHHHHHHHHHHHH Confidence 345789999999998665443333333333332222 22222 3344444445555555444433 23444556 Q ss_pred HHhccc-cCCceeeccCCceEEeccCChhh-----HHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHHHH Q lcl|Aclame:pro 233 SFMKRS-RSGGPVVLDDLEEFTALEIKSNV-----AQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASA 306 (392) Q Consensus 233 ~~~~~~-~~g~~~vl~~g~~~~~l~~~~~d-----~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~ 306 (392) .+.+.. +.++++++++|++|++++.++.| +||+|++++++++||++|||||++||++ .++.+++...|++++ T Consensus 209 ~~~g~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVPp~~l~~~--~s~~e~~~~~f~~~~ 286 (376) T protein:vir:78 209 VYASFNNNEIAIVPQLEGFNYEEFGTTSVNNSQSFDEVKKLRKEMIDYVASILGIPSSLLHGD--MADLSNNMKAYMEYC 286 (376) T ss_pred HhccccccCcceEEcCCCceEEeeccCccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC--CCCHHHHHHHHHHHH Confidence 666653 45568889999999999998866 4999999999999999999999999853 334456788999999 Q ss_pred HHHHHHHHHHHHHHHhhh----hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCc---ccccccCC Q lcl|Aclame:pro 307 LNRYLRPAISELEYKLSD----HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPK---DLPAPENT 379 (392) Q Consensus 307 l~p~l~~i~~~l~~~l~~----~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~~~~~ 379 (392) |.|++.+|+++|+++|++ .++++++.+++.|.+++++.+..++++|++|+||+|++++..+++.. .....-|+ T Consensus 287 l~P~~~~ie~~l~~kll~~~~~~~~~~~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~lg~~p~~~g~~d~~~~~~n~ 366 (376) T protein:vir:78 287 IDPLTKKLEDELNAKLFTFSEFLAGEHIKIIHKKDIIENAEAVDKLVASGSFNRNEVRELLGAERVDNPELDKYLITKNY 366 (376) T ss_pred HHHHHHHHHHHHHhhhCCcccceecccchhhcccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccCc Confidence 999999999999999974 36788888999999999999999999999999999998844433321 11112244 Q ss_pred CCCC-CCCCC Q lcl|Aclame:pro 380 NKKT-TGQSN 388 (392) Q Consensus 380 ~~~~-~gd~~ 388 (392) .|+. +|+++ T Consensus 367 ~~~~~~~e~g 376 (376) T protein:vir:78 367 QSADEGGEDG 376 (376) T ss_pred eehhccccCC Confidence 4444 34444 No 72 >protein:vir:80796 Length: 574 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504121;genbank:gi:158079308;genbank:GeneID:5666445 Probab=100.00 E-value=1e-63 Score=365.87 Aligned_cols=382 Identities=11% Similarity=0.030 Sum_probs=262.5 Q ss_pred Ccchhh------------------------------------hhhcccccccccccccccccCcchhhhhhhccCCCCcc Q lcl|Aclame:pro 1 MILPIL------------------------------------NFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEW 44 (392) Q Consensus 1 m~Mg~~------------------------------------n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (392) -.|++- ++-...... +.+. ++......+..+. .+.. T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~l~~~~--~~~i 96 (574) T protein:vir:80 25 YKMHLREIDTNVVNNEPYSMESIEKGMNGKTTAYMQPIIGEMSVNPGYKTK---PSIR---NSQDLHKTLKKFG--NNII 96 (574) T ss_pred hccccchhhhhhhhccCCCHHHHHHhHhhhcccccchhhhhccccccccCc---CccC---CcccHHHHHHhhc--cChh Confidence 223332 111100000 0000 0111122222221 1222 Q ss_pred cchhhhhcchHHHHHHHHHHHhhhhCceeeecchhh---------------hhc----ccCCccC-CHHHHHHHHHHHHH Q lcl|Aclame:pro 45 VSARAALRNSDLFSIILQLSSDLAIVKINAEKKKNQ---------------GII----DNPSTNA-NKHGFWQSMFAQLL 104 (392) Q Consensus 45 ~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~---------------~~~----~~PN~~~-t~~~f~~~~~~~l~ 104 (392) +..-..++..+|++|+.+|+.++|+|||+++.++.+ .++ ..|||++ |+.+|++.++.+++ T Consensus 97 v~~~i~~~~~~V~~~~~~i~~~ia~lp~~i~~kd~~~~~~~~~~~~~~~l~~ll~~~~~~~nP~~~s~~ef~~~lv~~ll 176 (574) T protein:vir:80 97 LNAIINTRSNQVSMYCKPARNSETGVGYEIRLKDIEAEPTSHDIANIKRIESFLENTAQFRDPNRDNFTTFCKKLVRATY 176 (574) T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCceEEEEeccCCCccchhhhhhhHHHHHHhccCCCCCCccccHHHHHHHHHHHHH Confidence 344455667789999999999999999999865321 122 2466665 88899999999999 Q ss_pred HhCCeeEEEecccCCceeEEEEeccccceeeecCCCceE---EEEEEecCCcceeeEEEecceEEEecCCCccc---ccc Q lcl|Aclame:pro 105 LGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGM---YYNITFDDPKIEPILQAPQSDLIHMKLLSIDG---GKT 178 (392) Q Consensus 105 l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~---~~~ 178 (392) ++||+|++++|+.+|+|++|+|++|.+|++..+.++... ..++++.+ ++....+++++|||+++++..+ ..+ T Consensus 177 l~Gnayi~i~r~~~G~~~~L~pl~p~~V~v~~d~~~~~~~~~~~y~~~~~--g~~~~~~~~~eiih~~~~~~~~~~~~~~ 254 (574) T protein:vir:80 177 MYDQVNFEKVFDKDGNFIKFDTVDPTTIFLATNGEGKLIKNGERFVQVID--NRIVAKFNERELAFAVRNPRADIEVGQY 254 (574) T ss_pred hcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCccccccCceEEEEEeC--CceEEEEccccEEEEeccCCCCcccccc Confidence 999999999999999999999999999999987665321 11222222 3456789999999999765443 457 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCC--chH--HHHHHHHHHHhccccCCce-eeccCCceEE Q lcl|Aclame:pro 179 GISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGL--LSD--KDKASRSRSFMKRSRSGGP-VVLDDLEEFT 253 (392) Q Consensus 179 G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~--~~~--~~~~~~~~~~~~~~~~g~~-~vl~~g~~~~ 253 (392) |+||+.+++..|..+.++++++.++|+||++|+|||+++.+.. +++ +.++.|.+.+.|..|+|++ +++++|++|+ T Consensus 255 G~spi~~a~~~i~~~~~a~~~~~~~f~ng~~p~gil~~~~~~~ls~e~~~~lk~~~~~~~~G~~n~g~~~vl~~~G~~~~ 334 (574) T protein:vir:80 255 GYPELEIALKQFIAHENTEVFNDRFFSHGGTTRGILHVKTGQQQSQQALDIFRREWRSSLAGINGSWQIPVVSAEDVKFV 334 (574) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceeecCCCceEE Confidence 9999999999999999999999999999999999999976533 222 3345667778888999996 4557899999 Q ss_pred eccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccccc-----------ch-HHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 254 ALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ-----------SS-IQQISGMYASALNRYLRPAISELEYK 321 (392) Q Consensus 254 ~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~-----------~~-~~~~~~~~~~~l~p~l~~i~~~l~~~ 321 (392) +++.++.|+||+|++++++++||++|||||++||..+.++ ++ +++...|++.+|.|++..|+++|+++ T Consensus 335 ~l~~s~~D~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~t~~gs~~~~~n~sn~E~~~~~f~~~tL~P~~~~ie~~ln~~ 414 (574) T protein:vir:80 335 NMTPSANDMQFEKWLNYLINVISALYGIDPAEINFPNNGGATGSKGGSLNEGNSKEKMQASQNKGLQPLLRFIEDTVNTY 414 (574) T ss_pred EccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh Confidence 9999999999999999999999999999999999754322 33 45678999999999999999999999 Q ss_pred hhhhhccchhhhhh-cChHH--HHHHHHHHHhCCccCHHHHHHHHHhCCCCCcccccc-cCCCCC--------------- Q lcl|Aclame:pro 322 LSDHISVNMRPAID-PLGDN--YLSTISTATRWGALAENQATFVLQEAGYIPKDLPAP-ENTNKK--------------- 382 (392) Q Consensus 322 l~~~~~~d~~~~~~-~~~~~--~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~-~~~~~~--------------- 382 (392) |++.++......+. .+... ....+..++.+|++|+||+|++++..+++..|.+.. -++.++ T Consensus 415 Ll~~~~~~~~~~f~~~d~~~~~~~~~~~~~~~~G~lT~NE~R~~lgl~Pi~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~ 494 (574) T protein:vir:80 415 IVAEFGEKYQFQFRGGDLSAQLDKLKIIEQEGKVFRTVNEIRHDKGLEPIKGGDVILNGVHIQAIGQALQEEQLEYQRSQ 494 (574) T ss_pred hhhhcCCceEEEecccchhhHHHHHHHHHHHhCCccCHHHHHHHhCCCCCCCCCEeeeccceeecccccccccCCccchh Confidence 98754322221111 12222 222344577899999999999986655543232211 011000 Q ss_pred ---------CCCCCCCCCC Q lcl|Aclame:pro 383 ---------TTGQSNEPVP 392 (392) Q Consensus 383 ---------~~gd~~~p~p 392 (392) .+++...|.| T Consensus 495 ~~~~~~~~~~~~~~~~~~~ 513 (574) T protein:vir:80 495 DRLNRLLELSGGDVEQPEP 513 (574) T ss_pred ccccccccccCCCCCCCCC Confidence 0111111111 No 73 >protein:vir:63755 Length: 547 # NCBI annotation: gp14 # Family: family:all:2446 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547619;genbank:GeneID:3783506 Probab=100.00 E-value=8.7e-64 Score=366.30 Aligned_cols=387 Identities=10% Similarity=0.024 Sum_probs=265.0 Q ss_pred chhhhhhccccccccccccccc-----------------------ccCcchhhhh-----hhccCCCCcccc-------h Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSY-----------------------FPDGNDAQIM-----ESLLGDNNEWVS-------A 47 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~-----~~~~~~~~~~~~-------~ 47 (392) ||||..|++.....+....... -+....+... ....+....... . T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~ 80 (547) T protein:vir:63 1 MGLFESIRLAGVNKSDAVKHIEVDDNYSIAIQQREQEQISKAMNNKEVAYSQPVIGSMSANPGFKTKPSIRNNQDLHGVL 80 (547) T ss_pred CchhhhhhhhcCCccccccccccccccchhhhhhhHHHHHHhhcccchhhhchhhheeecccccccCCccCChhHHHHHH Confidence 9999888774431111000000 0000000000 000000000111 1 Q ss_pred hhhhcchHHHHHHHHHHHhhhhC-------------ceeeecch-------------hhhhcccCCcc-----CCHHHHH Q lcl|Aclame:pro 48 RAALRNSDLFSIILQLSSDLAIV-------------KINAEKKK-------------NQGIIDNPSTN-----ANKHGFW 96 (392) Q Consensus 48 ~~al~~~~v~~~i~~ia~~ia~l-------------p~~~~~~~-------------~~~~~~~PN~~-----~t~~~f~ 96 (392) +.+..+|.|++||+.||+.||++ ++.+.+++ ...++.+||++ +|+++|+ T Consensus 81 ~~~~~npiv~~~I~~~a~~ia~~~~~~~~~~~~~~~~ir~k~~~~~~~~~~~~~~~~l~~~l~~pn~~~~p~~~s~~~f~ 160 (547) T protein:vir:63 81 KKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSFSSFV 160 (547) T ss_pred HHhhcCHHHHHHHHHHHHHHhhhhhhhhhhccCCCceeEecccccccChhhHHHHHHHHHHHHhhCCCCCCccchHHHHH Confidence 23445799999999999999974 23333211 12346778876 4889999 Q ss_pred HHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceE---EEEEEecCCcceeeEEEecceEEEecCCCc Q lcl|Aclame:pro 97 QSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGM---YYNITFDDPKIEPILQAPQSDLIHMKLLSI 173 (392) Q Consensus 97 ~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~vih~~~~~~ 173 (392) +.++.+++++||+|++++|+.+|++++|+||+|++|++..+.++... .+++++.+ .+....+++++|||+++++. T Consensus 161 ~~lv~d~ll~Gn~~~~i~rd~~G~~~~L~~l~p~~V~~~~~~~g~~~~~~~~y~~~~~--~~~~~~~~~~eiih~r~n~~ 238 (547) T protein:vir:63 161 KKIVRDTYMYDQVNFEKVFNRNQSMVRFVAKDPTTIFFATTADGKIPDNGNRFVQVID--QKIVATFNAREMAFAVRNPR 238 (547) T ss_pred HHHHHHHHhhCCEEEEEEECCCCcEEEEEEecCceeEEEECCccccccCceEEEEEcC--CcEEEEeccccEEEecccCC Confidence 99999999999999999999999999999999999999988776432 22222222 23456899999999998654 Q ss_pred cc---cccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH----HHHHHHHHHHhccccCCceeec Q lcl|Aclame:pro 174 DG---GKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD----KDKASRSRSFMKRSRSGGPVVL 246 (392) Q Consensus 174 ~~---~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~vl 246 (392) .+ ..+|+||+..+...|..+.+++++..++|+||++|+|+|+++......+ +.++.|...+.|..|+|+++++ T Consensus 239 ~~~~~~~~G~Spi~~~~~~i~~~~~a~~~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lk~~~~~~~~G~~nagk~~vl 318 (547) T protein:vir:63 239 SDIYATGYGYPELEIALKQFIAHENTEAFNDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQIPVV 318 (547) T ss_pred CCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhcCcccccccccc Confidence 43 4579999999999999999999999999999999999999876533222 3345566778889999997655 Q ss_pred -cCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc-----------cch-HHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 247 -DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-----------QSS-IQQISGMYASALNRYLRP 313 (392) Q Consensus 247 -~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-----------~~~-~~~~~~~~~~~l~p~l~~ 313 (392) ++|++|+++++++.|+||+|++++++++||++|||||++||..+++ .++ .++...|++.||.|++.. T Consensus 319 ~~~g~~~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPP~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~~~~~tL~P~~~~ 398 (547) T protein:vir:63 319 SAEDVKFVNMTPSARDMEFEKWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGF 398 (547) T ss_pred cCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHH Confidence 6899999999999999999999999999999999999999964432 233 345678999999999999 Q ss_pred HHHHHHHHhhhhhc----cchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCC-CCcccccc-cC--------- Q lcl|Aclame:pro 314 AISELEYKLSDHIS----VNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGY-IPKDLPAP-EN--------- 378 (392) Q Consensus 314 i~~~l~~~l~~~~~----~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~-~~~e~~~~-~~--------- 378 (392) |+++|+++|++.++ |++..+...+..+.+. +..++..|++|+||+|++++..+. +..|.+.. -+ T Consensus 399 ie~~ln~~L~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~g~lT~NE~R~~~gl~P~~egGD~~~~~~~~~~~~~~~~ 477 (547) T protein:vir:63 399 IEDFINKHIVAEFGDKYTFQFVGGDIKSELESVK-ILAEKAKVAMTVNEVRKELNLPGDVIGGDIPLNGVIVQRIGQLMQ 477 (547) T ss_pred HHHHHHhhcccccCCceEEEeeccccccHHHHHH-HHHHHhCCCcCHHHHHHHhCCCCCCCCCceeeccccccccccccc Confidence 99999999986543 3333332333333333 456778899999999998754442 22222110 00 Q ss_pred ---------------CCCCCCCCCCCCCC Q lcl|Aclame:pro 379 ---------------TNKKTTGQSNEPVP 392 (392) Q Consensus 379 ---------------~~~~~~gd~~~p~p 392 (392) .+..++++.+.+.| T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (547) T protein:vir:63 478 QEQFEHEKQQSNLQMLQEQTGNRVSTDVE 506 (547) T ss_pred ccCCccccchhhccccccccCCCCCCCCC Confidence 01111222222222 No 74 >protein:vir:9641 Length: 395 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795403;genbank:gi:28876176;genbank:GeneID:1257709 Probab=100.00 E-value=1.8e-64 Score=370.09 Aligned_cols=357 Identities=12% Similarity=0.070 Sum_probs=253.1 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) |||||||+++........ . ..+ ....++.+.++++++|++||++||++||+||+++++++. T Consensus 1 Mgl~d~~~~~~~~~~~~~--------~---~~~-----~~~~~~~~~~l~~~~v~~~i~~Ia~~ia~lp~~v~~~~~~~~ 64 (395) T protein:vir:96 1 MGILDFFSFKKSGTLSDD--------D---SGS-----TTSEKLTNVVLKEDALYKCVNYLARIISKSTFRIKAPEKLTE 64 (395) T ss_pred CcchhhhcCCCCcccccc--------c---ccc-----chhhhcchhhhhhHHHHHHHHHHHHhhccceeEEEeCCcccc Confidence 999999977643321111 0 001 112356788999999999999999999999999987542 Q ss_pred ------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCc Q lcl|Aclame:pro 80 ------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPK 153 (392) Q Consensus 80 ------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~ 153 (392) ..++.+||++||+++||+.++.+++++||+|+++.|+..+.+...++.... - ....+......+. T Consensus 65 ~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~v~~~~~- 135 (395) T protein:vir:96 65 NQKDWLYWINTKANPNQSASQFWVEVVQKLLVDGETLIFVIPGKGIYVADAFTQDKK-------L-SGNKFKVSRVQGQ- 135 (395) T ss_pred ccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEcCCceecCCccccccc-------c-ccceeeeeeeccc- Confidence 234579999999999999999999999999999998765433322222111 0 1112222223222 Q ss_pred ceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHH------HHHHHHHHHHHHccCCcceEEeeCCCCCchHHHH Q lcl|Aclame:pro 154 IEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQ------RASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDK 227 (392) Q Consensus 154 ~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~------~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~ 227 (392) .....+++++|+|+|+.+++...++.+++......+... ..+.++..+++.+++.+.++++.++....+ .. T Consensus 136 -~~~~~~~~~dvih~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 212 (395) T protein:vir:96 136 -TYEKIFTFDQVIYLKNDNSDLMLKVESLWEEYGELLGHVINNQKIANQIRFTMTPPKDKVRERAQENSDGGRQPK--SD 212 (395) T ss_pred -eeeeEeccCceEEecccCCccccccccccchHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeccCchhhHH--HH Confidence 234678999999999887766555555555444433333 233467788899999999999887654432 23 Q ss_pred HHHHHHHhcc--ccCCceeeccCCceEEeccCChhhHHHHHHHHHH------HHHHHHHhcccHHHcCCcccccchHHHH Q lcl|Aclame:pro 228 ASRSRSFMKR--SRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWT------SKQYAKVYGLPDSYIGGQGDQQSSIQQI 299 (392) Q Consensus 228 ~~~~~~~~~~--~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~------~~~Ia~~fgVP~~~lg~~~~~~~~~~~~ 299 (392) +++.+.+.+. .+.++++++++|++|++++.++.|+|++|.+++. .++||++|||||++||+ +.++.+++. T Consensus 213 ~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~~~eIa~~fgVPp~~l~~--~~sn~e~~~ 290 (395) T protein:vir:96 213 KDFFKRTIEKIRTESVVGIPVTANTNYEEYGSKNTGSVKSYVDDIKKLKDQYMAEFAEMLGIPISLLHG--DIADNQKNY 290 (395) T ss_pred HHHHHHHHHHhhcCCcceEEccCCceeEecccChhhhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhcC--CCccHHHHH Confidence 3333333332 3455688899999999999999999999988776 48999999999999975 344556778 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh------hccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccc Q lcl|Aclame:pro 300 SGMYASALNRYLRPAISELEYKLSDH------ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDL 373 (392) Q Consensus 300 ~~~~~~~l~p~l~~i~~~l~~~l~~~------~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~ 373 (392) ++|++++|.|++.+|+++|+++|++. +.|+++.+++.|.+++++.+..++++|++|+||+|+++ |++|-+. T Consensus 291 ~~f~~~~L~P~~~~ie~~l~~~Ll~~~e~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~---gl~pi~~ 367 (395) T protein:vir:96 291 ELLLEGPIESLITNIVDGLEYAIFDKSETLEGSFIKVTGLKNYDLFSISSQADKLISSGFVFIDEVREEI---GLPELPD 367 (395) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhhhcCceeEeecchhccCHHHHHHHHHHHHhCCCcCHHHHHHHh---CCCCCCC Confidence 99999999999999999999999752 45788889999999999999999999999999999987 4444322 Q ss_pred cccc------CCCCC--CCCCCCCCCC Q lcl|Aclame:pro 374 PAPE------NTNKK--TTGQSNEPVP 392 (392) Q Consensus 374 ~~~~------~~~~~--~~gd~~~p~p 392 (392) +.++ |..|+ .||+.++-.= T Consensus 368 ~~gD~~~~~~N~~~~~~~gge~~~~~~ 394 (395) T protein:vir:96 368 GLGKVLYMTKNYESVLERGGEVDEEVE 394 (395) T ss_pred CCCceeeecccceechhccCCCCCCCC Confidence 2222 22222 2343332222 No 75 >protein:vir:4089 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510984;swissprot:trembl:q8w606;genbank:gi:17488506;uniprot:Q8W606;genbank:GeneID:1260314 Probab=100.00 E-value=5.3e-64 Score=367.48 Aligned_cols=359 Identities=12% Similarity=0.066 Sum_probs=249.9 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) |||++||+........... ..+. .....+..++.++++++++|++||++||++||++|+++++++. T Consensus 1 Mg~~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~~~~~~~~l~~~~v~~~v~~Ia~~ia~~p~~~~~~~~~~~ 69 (395) T protein:vir:40 1 MGFKSWVSGFFNEEQRTLN------LTDT-----VWCSIPSEKLKELSIKKWAIDSCANKIANTLSCAEVLTYEKGEEVR 69 (395) T ss_pred CchHHHHHhhhcccccccc------cccc-----hhhccccccchhhhhhhHHHHHHHHHHHHHHhhCceeeccCCcccc Confidence 9999998887655433221 1111 1112334567789999999999999999999999999987542 Q ss_pred ----hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCcce Q lcl|Aclame:pro 80 ----QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIE 155 (392) Q Consensus 80 ----~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 155 (392) ..++.+||++||+++||+.++.+|+++||||+++.++.. ++.+ ..+ +.........+.....++ .+ T Consensus 70 ~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~~~~~~~------~~~~-~~~-~~~~~~~~~~~~~v~~~~--~~ 139 (395) T protein:vir:40 70 KKNWYMFNVEANQNQNATEFWKKAIYKLVYDNEALIFMQDEYI------YVAD-SFT-KNDKSLYENTYTEVTLKD--LT 139 (395) T ss_pred chHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEecCce------eecC-Ccc-ccccccccceeeeeeecC--ce Confidence 346779999999999999999999999999999987642 2222 121 111111122222233332 12 Q ss_pred eeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH--HHHHHHHHH Q lcl|Aclame:pro 156 PILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD--KDKASRSRS 233 (392) Q Consensus 156 ~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~--~~~~~~~~~ 233 (392) ..+.+++++|||+|+.+..+...+.+.+......+.... ....+.++.++.++++.+...+.+. +.++.+.+. T Consensus 140 ~~~~~~~~evih~r~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 214 (395) T protein:vir:40 140 LKKEFKESEVLHLTLNNESIKSIIDGFYLLYGDLLTAAV-----NKYKKLNSRKIIVKLKAMFGQTPEAEEKLRLMLSER 214 (395) T ss_pred eeeeeccccEEEeecCCCCccccchhHHHHHHHHHHHHH-----HHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHH Confidence 346789999999998765554444444444444333222 2233455555666666665554442 334455555 Q ss_pred Hhcc-ccCCceeeccCCceEEeccCChhhHHHHHHHHHHH---HHHHHHhcccHHHcCCcccccchHHHHHHHHHHHHHH Q lcl|Aclame:pro 234 FMKR-SRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTS---KQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNR 309 (392) Q Consensus 234 ~~~~-~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~---~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p 309 (392) +.+. .+.++++++++|++|++++.++.|+|++|++++.. ++||++|||||++||++ +++.+++...|++++|.| T Consensus 215 ~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~Ia~~fgVPp~~l~~~--~sn~e~~~~~f~~~~L~P 292 (395) T protein:vir:40 215 MKKFLAEGDSALPVEDGMEIDELAGDSKIAESRDIKKMIDDVFEMVANSFNIPLGLAKGD--TVGLSEQVNSFLMFSINP 292 (395) T ss_pred HHHhhccCCceeecCCCceEEeccCChhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhcCC--CcCHHHHHHHHHHHHHHH Confidence 5553 57788999999999999999999999999998875 79999999999999753 344567789999999999 Q ss_pred HHHHHHHHHHHHhhh--------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccccccc---- Q lcl|Aclame:pro 310 YLRPAISELEYKLSD--------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAPE---- 377 (392) Q Consensus 310 ~l~~i~~~l~~~l~~--------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~~---- 377 (392) ++.+|+++|+++|++ +++||...+++.|.+++++.+.+++++|++|+||+|+++ |++|.+.|..+ T Consensus 293 ~~~~ie~~l~~kLl~~~~~~~g~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~---g~~pi~~~~gD~~~~ 369 (395) T protein:vir:40 293 IAEMFTDEGNRKFYGRDSVLERTYMKLDTTRIKVQDIQEIASSMDVLFHIGVNTIDDNLRMI---GREPVMSPETQERFV 369 (395) T ss_pred HHHHHHHHHHHhcCChhhhcCCceEEEechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHh---CCCCCCCCCCceeee Confidence 999999999999964 478999999999999999999999999999999999987 44443323222 Q ss_pred CCCCCCCCCCCCCCC Q lcl|Aclame:pro 378 NTNKKTTGQSNEPVP 392 (392) Q Consensus 378 ~~~~~~~gd~~~p~p 392 (392) .++..+.+...+... T Consensus 370 ~~n~~~~~~~~~~~k 384 (395) T protein:vir:40 370 TKNYAPLGENEEDLK 384 (395) T ss_pred ccccccccccccccC Confidence 111111111111111 No 76 >protein:vir:96579 Length: 576 # NCBI annotation: ORF012 # Family: family:all:2446 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238542;genbank:gi:66391267;genbank:GeneID:5130361 Probab=100.00 E-value=3.4e-63 Score=363.04 Aligned_cols=390 Identities=11% Similarity=0.008 Sum_probs=259.4 Q ss_pred Ccchhhhhhccccc---ccccccccccccCcchhhhhhhccCCCCcc-----c--------chhhhhcchHHHHHHHHHH Q lcl|Aclame:pro 1 MILPILNFINQTND---PPEAGSVQSYFPDGNDAQIMESLLGDNNEW-----V--------SARAALRNSDLFSIILQLS 64 (392) Q Consensus 1 m~Mg~~n~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--------~~~~al~~~~v~~~i~~ia 64 (392) |.-++-.+|+.... ..+....+... ....++...+.+..+.. + .-+....+|.|++||++|| T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--a~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~npiv~~~I~~ia 104 (576) T protein:vir:96 27 IDDGLQANIRNIEEKSKELNKSLYGKQQ--AYAEPFLEVMDTNPEFRTKRSYMKNSDNLHDVLKQFGNNPILNAIILTRS 104 (576) T ss_pred cccChhHHHHHhhhhhhhhccccCCccc--hhhcceeeeeecCCCccccCcchhhhhhhHHHHHHhhcCHHHHHHHHHHH Confidence 33333333333211 11110001000 00111111111111100 0 0022235788999999999 Q ss_pred HhhhhC-------------ceeeecchhh-----------------hhcccCCcc-CCHHHHHHHHHHHHHHhCCeeEEE Q lcl|Aclame:pro 65 SDLAIV-------------KINAEKKKNQ-----------------GIIDNPSTN-ANKHGFWQSMFAQLLLGGEAFAYR 113 (392) Q Consensus 65 ~~ia~l-------------p~~~~~~~~~-----------------~~~~~PN~~-~t~~~f~~~~~~~l~l~G~a~~~i 113 (392) ++||++ ++.+++++.. ..+..||++ +|+++|++.++.+++++||+|+++ T Consensus 105 ~~vA~~~~~~~~~~~~~~~~i~lk~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~dlll~Gna~~~i 184 (576) T protein:vir:96 105 NQVAMYCQPSRYNERGLGFEVRMRDLDAEPGKKEKEEIKRIENFILNTGRDKDIDRDSFQSFCRKIVRDTYTYDQVNFEK 184 (576) T ss_pred HHHHhhhhhhhhccccccceeEEecCcCccchhhhHhhhhHHhhHhhccCCCCCccccHHHHHHHHHHHHHhcCCeEEEE Confidence 999973 4444433210 112345555 589999999999999999999998 Q ss_pred ec--ccCCceeEEEEeccccceeeecCCCceEEEEEE-ecCCcceeeEEEecceEEEecCCCcc---ccccCCCHHHHHH Q lcl|Aclame:pro 114 WR--NANGADMKWEYLRPSQVNTYYFEYENGMYYNIT-FDDPKIEPILQAPQSDLIHMKLLSID---GGKTGISPLYSLR 187 (392) Q Consensus 114 ~r--~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vih~~~~~~~---~~~~G~s~l~~~~ 187 (392) ++ +..|++++|+||+|++|++..+.++...++... +.....+....+++++|||++.+... ...+|+||+.++. T Consensus 185 ~~~rd~~g~~~~L~pl~p~~V~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~d~~~~~~G~Spi~~a~ 264 (576) T protein:vir:96 185 VFNKKNATTMDKFIAVDPSTIFYATDKNGKIIKGGKRFVQVINKKVVASFTSREMAMGIRNPRTELSSSGYGLSEVEIAM 264 (576) T ss_pred EEecCCCCceEEEEEeCCceeEEEECCCCceeeeeeEEEEecCCceEEEecccceEEEeecCCCCcccCcccccHHHHHH Confidence 84 556889999999999999999988765543221 11122345678899998877644332 2467999999999 Q ss_pred HHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCC--ch--HHHHHHHHHHHhccccCCc-eeeccCCceEEeccCChhhH Q lcl|Aclame:pro 188 RESKIQRASDRLTISSLNSSLNVPGVLTVKGGGL--LS--DKDKASRSRSFMKRSRSGG-PVVLDDLEEFTALEIKSNVA 262 (392) Q Consensus 188 ~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~--~~--~~~~~~~~~~~~~~~~~g~-~~vl~~g~~~~~l~~~~~d~ 262 (392) ..|..+.++++++.++|+||++|+|||+++.... ++ ++.++.|.+.+.|..|+|+ ++||++|++|+++++++.|+ T Consensus 265 ~~i~~~~~~~~~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lr~~~~~~~~G~~nag~~p~vl~~G~~~~~ls~~~~d~ 344 (576) T protein:vir:96 265 KQFIAYNNTETFNDRFFSHGGTTRGILQIKSEQQQSQRALENFKREWKSSFSGINGSWQVPVVMADDIKFVNMTPTANDM 344 (576) T ss_pred HHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceeecCCCceEEeccCChhhH Confidence 9999999999999999999999999999986543 22 2335566777889999999 58999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHhcccHHHcCCcccc------------cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc Q lcl|Aclame:pro 263 QLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ------------QS-SIQQISGMYASALNRYLRPAISELEYKLSDHISVN 329 (392) Q Consensus 263 ~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~------------~~-~~~~~~~~~~~~l~p~l~~i~~~l~~~l~~~~~~d 329 (392) ||+|++++++++||++|||||++||..+.+ ++ .+++..+|++.||.|++..|+++|+.+|++.++.+ T Consensus 345 qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~g~~~~~s~t~sn~e~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~~~ 424 (576) T protein:vir:96 345 QFEKWLTYLINIISALYGIDPAEIGFPNRGGATGGKGGNTLNEADPGKKQQQSQNKGLQPLLRFIEDLINTHIISEYSDK 424 (576) T ss_pred HHHHHHHHhHHHHHHHhCCCHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccCc Confidence 999999999999999999999999975432 23 34567899999999999999999999998765433 Q ss_pred hhh-hhhcChHHHHHHHHH--HHhCCccCHHHHHHHHHhCCCCCcccccc-cCCCCC-----CCCCC------------- Q lcl|Aclame:pro 330 MRP-AIDPLGDNYLSTIST--ATRWGALAENQATFVLQEAGYIPKDLPAP-ENTNKK-----TTGQS------------- 387 (392) Q Consensus 330 ~~~-~~~~~~~~~~~~~~~--~~~~g~~t~nE~R~~l~~~g~~~~e~~~~-~~~~~~-----~~gd~------------- 387 (392) +.. +.+.|...+++.+.. ++..|++|+||+|++++..+++..|.+.. -++.+. .++.+ T Consensus 425 ~~~~f~r~d~~~~~e~~~~~~~~~~G~lT~NE~R~~~gl~piegGD~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 504 (576) T protein:vir:96 425 YVFQFVGGDTKSELDKIKILQEEVKTYKTVNEARKEKGLKPIEGGDVLLDGSFIQSMSLNTQKEQYEDTKQKERFDMIQQ 504 (576) T ss_pred eEEEeccCCHHHHHHHHHHHHHHhcCccCHHHHHHHhCCCCCCCcceeccccccccccccccCCCCCCcccccccccccc Confidence 221 245666666665543 45679999999999875544432222211 011110 00000 Q ss_pred ----CCCC-C Q lcl|Aclame:pro 388 ----NEPV-P 392 (392) Q Consensus 388 ----~~p~-p 392 (392) +.|- | T Consensus 505 ~~~~~~~~~~ 514 (576) T protein:vir:96 505 FLNSPDDEEP 514 (576) T ss_pred ccCCCCCCCC Confidence 0011 1 No 77 >protein:vir:100691 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:2446 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164747;genbank:gi:56693160;genbank:GeneID:3197324 Probab=100.00 E-value=5e-63 Score=362.16 Aligned_cols=387 Identities=10% Similarity=0.031 Sum_probs=263.8 Q ss_pred chhhh-------hhccccc-----------------ccccccccccccC--------------------cchhhhhhhcc Q lcl|Aclame:pro 3 LPILN-------FINQTND-----------------PPEAGSVQSYFPD--------------------GNDAQIMESLL 38 (392) Q Consensus 3 Mg~~n-------~~~~~~~-----------------~~~~~~~~~~~~~--------------------~~~~~~~~~~~ 38 (392) |.|+. .+.++.. .+.+.+.+..... .....++..+. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~ 80 (535) T protein:vir:10 1 MAILKDLRNAFSLSNKKSTSYIELGDYDKDIVNKAIRPGRASARDTVDGIDIADGNVAGQYSVASISDVLSTKKLLKAYA 80 (535) T ss_pred ChhhHHHHHHHHhhhhhhhhhHHHhhhhHHHHHhhhhhhhhhhhccccccccccCCcccccccCccccccCHHHHHHHhc Confidence 43331 1111110 0000000110000 00011111111 Q ss_pred CCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--------------hhhcccCCccCCHHH----HHHHHH Q lcl|Aclame:pro 39 GDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--------------QGIIDNPSTNANKHG----FWQSMF 100 (392) Q Consensus 39 ~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--------------~~~~~~PN~~~t~~~----f~~~~~ 100 (392) ....+...-+++....++++|+.+++++++++|+++++.+. ..++.+||++|++++ |++.++ T Consensus 81 ~~~~~~~~i~t~~~~va~~~~i~~~s~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~~~~~~~~~~~~~lv 160 (535) T protein:vir:10 81 DNDIVQAIIRTRTNQVLTYSNPSRYNRNGVGFKVELKDATKVMSKAQIKRAHEIEDFIYNTGSEYYEWRDTFPRLLTKII 160 (535) T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHhcccCcceeEEEeccCCCcchhhhhhhHHHHHHHhCCCCCCChhHHHHHHHHHHH Confidence 11111112245556788999999999999999999986532 235679999998876 555666 Q ss_pred HHHHHh-CCeeEEEecccCCceeEEEEeccccceeeecCCCceE-EEEEEecCCcceeeEEEecceEEEecCCCccc--- Q lcl|Aclame:pro 101 AQLLLG-GEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGM-YYNITFDDPKIEPILQAPQSDLIHMKLLSIDG--- 175 (392) Q Consensus 101 ~~l~l~-G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~--- 175 (392) .+++++ |++|++++|+..|+|++||||+|++|++..+.++... .+++.+.+ .+....+++++|||+++++..+ T Consensus 161 ~d~l~~~g~ay~~i~r~~~G~~~~L~~l~p~~V~v~~d~~~~~~~~~~~~~~~--~~~~~~~~~~eiih~~~~~~~~~~~ 238 (535) T protein:vir:10 161 NDMYVQDQINIERIFKNDSNELDHFNAVDASKVVISYSPRSKDQPRKFEQFVS--ETKSVKFSERNLTFINYWNLSDTDR 238 (535) T ss_pred HHHHhhCCceEEEEEECCCCcEEEEEEeCCceeEEEEcCccccCceEEEEEec--CceeEEECcccEEEEeccCCCCccc Confidence 666555 5899999999999999999999999999887655321 11222222 2345689999999999865443 Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCC----Cch--HHHHHHHHHHHhccccCCceeecc-C Q lcl|Aclame:pro 176 GKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGG----LLS--DKDKASRSRSFMKRSRSGGPVVLD-D 248 (392) Q Consensus 176 ~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~----~~~--~~~~~~~~~~~~~~~~~g~~~vl~-~ 248 (392) ..+|+||+..+...|..+.+++++..++|+||++|+|||++++.. +.+ ++.++.|...+.|..|+|+++++. + T Consensus 239 ~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~ng~~p~giL~~~~~~~~~ls~e~~e~lk~~~~~~~~G~~nag~~~vl~~~ 318 (535) T protein:vir:10 239 RGYGYSPVEASIPLIRAIYDTEQFNARFFSQGGTTRGILVIDQDGDAQANQMMLAGIRRQWTSQGSGLGGAWKIPILAAK 318 (535) T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEecCCCCcccCHHHHHHHHHHHHHHhcCcccccccccccCC Confidence 457999999999999999999999999999999999999998642 222 233456677788999999987665 7 Q ss_pred CceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccccc-------------ch-HHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 249 LEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ-------------SS-IQQISGMYASALNRYLRPA 314 (392) Q Consensus 249 g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~-------------~~-~~~~~~~~~~~l~p~l~~i 314 (392) |++|+++++++.|+||+|++++++++||++|||||++||..++++ ++ .++...|++.+|.|++..| T Consensus 319 g~~~~~l~~~~~D~qfle~~~~~~~eIa~afgVPp~~lG~~~~at~sn~~~~~~~~~~s~~E~~~~~~~~~~L~P~l~~i 398 (535) T protein:vir:10 319 DAKFVNMTQNSRDMEFDKFLNFMIYDTAAIFQMQPEEINFPNNGGSTGKSGTKSVNEGSTAKAKLESSKDKGLTPLLSFI 398 (535) T ss_pred CceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH Confidence 999999999999999999999999999999999999999765432 12 2345678899999999999 Q ss_pred HHHHHHHhhhh----hccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcccccc----cCC------- Q lcl|Aclame:pro 315 ISELEYKLSDH----ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAP----ENT------- 379 (392) Q Consensus 315 ~~~l~~~l~~~----~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~----~~~------- 379 (392) +++|+++|++. +.|++..+.+.|..+++..+... ..|++|+||+|++++..+++..|.+.. .++ T Consensus 399 e~~ln~~Ll~~~~~~~~f~f~~l~~~d~~~r~~~~~~~-~~g~lT~NE~R~~~gl~piegGD~~~~~~~~~~~~~~~~~~ 477 (535) T protein:vir:10 399 EQVINDKIMRYVDTDYRFSFTLGDAQDKLQEEQVWKLK-LANGYFINEYRKDHGLKTVDGLDVPGFIGSAENFINATGFG 477 (535) T ss_pred HHHHhhhcccccCCeEEEEeccccccCHHHHHHHHHHH-HcCCCCHHHHHHHhCCCCCCCccccccccchhhcccccccc Confidence 99999999764 45666777788888777766554 467799999999886555443333221 000 Q ss_pred ---CCCCCCCCCCCCC Q lcl|Aclame:pro 380 ---NKKTTGQSNEPVP 392 (392) Q Consensus 380 ---~~~~~gd~~~p~p 392 (392) .|.+..++.++++ T Consensus 478 ~~~~p~~~~~~~~~~~ 493 (535) T protein:vir:10 478 QPNVPDSSDDSGSTLG 493 (535) T ss_pred cccCCCCCCCccccCC Confidence 0000001111111 No 78 >protein:vir:3153 Length: 467 # NCBI annotation: capsid protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665924;genbank:gi:22091110;genbank:GeneID:951257 Probab=100.00 E-value=1.6e-62 Score=359.31 Aligned_cols=347 Identities=13% Similarity=0.040 Sum_probs=260.4 Q ss_pred chhhhhcchHHHHHHHHHHHhhhhCceeeecchh----------------hhhcccCCccC--------CHHHHHHHHHH Q lcl|Aclame:pro 46 SARAALRNSDLFSIILQLSSDLAIVKINAEKKKN----------------QGIIDNPSTNA--------NKHGFWQSMFA 101 (392) Q Consensus 46 ~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~----------------~~~~~~PN~~~--------t~~~f~~~~~~ 101 (392) -.+-+-.+++|++||++||++||++|++++.+.. ..+..+||+.| |+.+||+.++. T Consensus 1 l~~l~~~n~~v~~ci~~ia~~ia~~p~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~pn~~~~~~~~~~~t~~~~~~~~~~ 80 (467) T protein:vir:31 1 MAELLEHNETHAKCVHAKSRYVAGFGINIIPHPEAEDPDRDGEQYERVWDFWFGDDSNWQVGPMESERATATNVLQTAWT 80 (467) T ss_pred ChhhhhcCHHHHHHHHHHHHhhhcCCeEEEEccCcccccchhhhhhhHHHHhhccCCCccccchhhHhhHHHHHHHHHHH Confidence 1122224789999999999999999999974321 12245677654 67789999999 Q ss_pred HHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCC-------ceEEE------------------EEEecCCccee Q lcl|Aclame:pro 102 QLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYE-------NGMYY------------------NITFDDPKIEP 156 (392) Q Consensus 102 ~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~-------~~~~~------------------~~~~~~~~~~~ 156 (392) +++++||+|++++|+.+|+|++|+|++|++|++..+... ...++ .........+. T Consensus 81 ~l~l~Gn~~i~~~r~~~G~~~~l~~l~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (467) T protein:vir:31 81 DYEAIGWLTIEILTQTDGTPTGLAYVPGHTIRKRMDERGFVQLLEEKEKYFGVAGDRYQTNGNGDLDPVFVDADDGSTGT 160 (467) T ss_pred HHHhcCCeEEEEEECCCCcEEEEEEeCCceeEeeeecceeEeecCCceeeEEeccccceeecccceeeeeeeeccccccc Confidence 999999999999999999999999999999998766432 11111 11112233455 Q ss_pred eEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCC-CCchHH--HHHHHHHH Q lcl|Aclame:pro 157 ILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGG-GLLSDK--DKASRSRS 233 (392) Q Consensus 157 ~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~-~~~~~~--~~~~~~~~ 233 (392) .+.+++++|||++.+++.+..+|+||+.++...+..+.++++++.++|+||++|+|++++++. ...++. .++.+... T Consensus 161 ~~~~~~~diih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~~~~~~~~~ 240 (467) T protein:vir:31 161 SVSNPANELIFKRNHSPLYPHYGAPDIIPAVKTIRGDSAAQDYNIDFFENDGVPRIAIIVKGAELTEKGREEMRNLIEDN 240 (467) T ss_pred eeEeccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHHHHHHHHHHHHhh Confidence 678999999999998878888999999999999999999999999999999999999998754 333322 22233332 Q ss_pred H-----------hccccCCceeeccCCceEEecc--------CChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc-- Q lcl|Aclame:pro 234 F-----------MKRSRSGGPVVLDDLEEFTALE--------IKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-- 292 (392) Q Consensus 234 ~-----------~~~~~~g~~~vl~~g~~~~~l~--------~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-- 292 (392) + .+..|++++++++.|+++++++ .+++|+||+|++++++++||++|||||.+||...++ T Consensus 241 ~~~~~~~~~~~~~g~~n~~~~~~l~~g~~~~~~~~~~~~ls~~~~~d~qf~e~~~~~~~~Ia~~fgVpp~~lG~~~~~~~ 320 (467) T protein:vir:31 241 NEDNHRTAFIETEKIVQNEDYLNLADGADRSDVEIRLEPLTVGIDEEASFLEFRGRNEHDILKVHDVPPVIAGVVESGAF 320 (467) T ss_pred hcchhhhhhhhhcccccccccccccCCCcccccceeEEeccccChhhHHHHHHHHHHHHHHHHHhCCCHHHcccCCCCCc Confidence 2 2556888999998877655543 367899999999999999999999999999975332 Q ss_pred cch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHH Q lcl|Aclame:pro 293 QSS-IQQISGMYASALNRYLRPAISELEYKLSD--------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVL 363 (392) Q Consensus 293 ~~~-~~~~~~~~~~~l~p~l~~i~~~l~~~l~~--------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l 363 (392) .++ .++..+|++.+|.|+++.|+++||.+|++ +++||...+++.|.++++..+..++++|++|+||+|+++ T Consensus 321 ~s~~e~~~~~f~~~~l~P~~~~ie~~ln~~l~~~~~~~~~~~i~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~ 400 (467) T protein:vir:31 321 STDAEEQRKEFAEETIQPKQHDFGELLYELVHKQGLDAPDWTIEFELAKPDTKLQDVEIASQRVQAMQGLLTVNELRDEF 400 (467) T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhccCCceEEEecchhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh Confidence 233 45678999999999999999999999964 368999999999999999999999999999999999987 Q ss_pred HhCCCCCccc-cc-----ccCCCCCC---CCCCCCCCC Q lcl|Aclame:pro 364 QEAGYIPKDL-PA-----PENTNKKT---TGQSNEPVP 392 (392) Q Consensus 364 ~~~g~~~~e~-~~-----~~~~~~~~---~gd~~~p~p 392 (392) +..+++..+. +. ..+.+..+ .+++.++.+ T Consensus 401 Gl~pi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (467) T protein:vir:31 401 GFEPFPEEHVYGGETLVAEVTGGSGPGGGIGDQIEQLV 438 (467) T ss_pred CCCCCCcccccCCcccccccccccCCCCcccCcCCCCC Confidence 5444321111 10 00111111 122222222 No 79 >protein:vir:98643 Length: 395 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039921;genbank:gi:126011096;genbank:GeneID:4818479 Probab=100.00 E-value=2e-62 Score=358.87 Aligned_cols=362 Identities=12% Similarity=0.067 Sum_probs=253.4 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) ||||+||.++........ .. +.....++.+.++++++|++||++||++||++|+++++++. T Consensus 1 MGlf~~~~~~~~~~~~~~--------~~--------~~~~~~~~~~~~~~~~~v~~~I~~ia~~iA~lp~~~~~~~~~~~ 64 (395) T protein:vir:98 1 MGILDFFSFKKSGTLSDD--------DS--------GSTTSEKLTNVVLKEDALYKCVNYLARIISKSTFRLKTPEKLTE 64 (395) T ss_pred CcchhhhcCCCccccccc--------cc--------chhhhhhcchhhhhhHHHHHHHHHHHHHHhhCceeEEecCCccc Confidence 999999976543221111 00 01112356678899999999999999999999999987542 Q ss_pred ------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCc Q lcl|Aclame:pro 80 ------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPK 153 (392) Q Consensus 80 ------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~ 153 (392) ..++.+||++||+++||+.++.+++++||||+++.++..+. +++..+.... .....++..+.... T Consensus 65 ~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~~~~~- 135 (395) T protein:vir:98 65 NQKDWLYWINTKANPNQSASQFWVEVIQKLLVDGETLIFVIPGKGIY------VADSFTQDKK--ISGSQFKVSRVQGQ- 135 (395) T ss_pred ccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeCCcee------cCCccccccc--ccCcccceeeecCc- Confidence 23457999999999999999999999999999999875432 2222222211 11122233333322 Q ss_pred ceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHH--HHHHHHHHHccCCcceEEeeCCCCCch--HHHHHH Q lcl|Aclame:pro 154 IEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRAS--DRLTISSLNSSLNVPGVLTVKGGGLLS--DKDKAS 229 (392) Q Consensus 154 ~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~--~~~~~~~~~ng~~~~~i~~~~~~~~~~--~~~~~~ 229 (392) .....+++++|||+|+.+.++...+.+++......+...... .....+++.++..+.+++........+ ++..++ T Consensus 136 -~~~~~~~~~evih~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (395) T protein:vir:98 136 -TYEKTFTFDQVIYLKNDNSDLMSKVESLWEEYGELLGHVINNQKIANQIRFTMIPPKDKVRERAQENSDGGRQSKSDKD 214 (395) T ss_pred -eeeeEecCccEEEecCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCcHHHHHHHHH Confidence 224678999999999887777666667666666655544333 344567888888888887765543322 223333 Q ss_pred HHHHHhcc--ccCCceeeccCCceEEeccCC------hhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHH Q lcl|Aclame:pro 230 RSRSFMKR--SRSGGPVVLDDLEEFTALEIK------SNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISG 301 (392) Q Consensus 230 ~~~~~~~~--~~~g~~~vl~~g~~~~~l~~~------~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~ 301 (392) +.+.+.+. .+.++++++++|++|++++++ +.++|+.+.+++++++||++|||||++||+ ++++.+++..+ T Consensus 215 ~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVP~~~l~~--~~sn~e~~~~~ 292 (395) T protein:vir:98 215 FFKRTVEKIRTESVVGIPVTANTNYEEYGSKNTGAVKSYVDDIKKLKDQYMAEFAEMLGIPISLLHG--DIADNQKNYEL 292 (395) T ss_pred HHHHHHhhhhcCCcceeecCCCceeEecccccccccChhHHHHHHHHHHHHHHHHHHhCCCHHHhcC--CcccHHHHHHH Confidence 44444433 345568889999999999854 677899999999999999999999999974 34455677899 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh------hccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCC--cc- Q lcl|Aclame:pro 302 MYASALNRYLRPAISELEYKLSDH------ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIP--KD- 372 (392) Q Consensus 302 ~~~~~l~p~l~~i~~~l~~~l~~~------~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~--~e- 372 (392) |++++|.|++.+|+++|+++|++. +.||++.+++.|.+++++.+..++++|++|+||+|++++..+++. .| T Consensus 293 f~~~tl~P~~~~ie~~l~~kll~~~~~~~g~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~Pi~~~~gD~ 372 (395) T protein:vir:98 293 LLEGPIESLITNIVDGLEYAIFDKSETLQGSFIKVTGLKNYDLFSISNQADKLISSGFVFIDEVREEIGLPELPDGLGKV 372 (395) T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhcCcceeeehhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCce Confidence 999999999999999999998753 457888899999999999999999999999999999874443321 11 Q ss_pred cccccCCCCCC--CCCCCCCCC Q lcl|Aclame:pro 373 LPAPENTNKKT--TGQSNEPVP 392 (392) Q Consensus 373 ~~~~~~~~~~~--~gd~~~p~p 392 (392) .-..-|+.|++ ||+.++-.= T Consensus 373 ~~~~~n~~~~~~~gge~~~~~~ 394 (395) T protein:vir:98 373 LYMTKNYESVLERGGEVDEEVE 394 (395) T ss_pred eeecccceecccccCCCCCCCC Confidence 11112333332 333222111 No 80 >protein:vir:99312 Length: 563 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024471;genbank:gi:48696430;genbank:GeneID:2948040 Probab=100.00 E-value=2.5e-60 Score=347.30 Aligned_cols=388 Identities=11% Similarity=0.020 Sum_probs=255.2 Q ss_pred Cc---------------chhhhhhcccccccccccccccccCcch--hhhhhhccCCCCcccc----hhhhhcchHHHHH Q lcl|Aclame:pro 1 MI---------------LPILNFINQTNDPPEAGSVQSYFPDGND--AQIMESLLGDNNEWVS----ARAALRNSDLFSI 59 (392) Q Consensus 1 m~---------------Mg~~n~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~al~~~~v~~~ 59 (392) .+ -..++.+.+....... .+..++....+ .++... .+...-..+ -+..-.++.+.+| T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~n~i~~~~ 100 (563) T protein:vir:99 23 VPIDEGLQANIKKIEQDNKEYQDLTKSLYGQQQ-AYAEPFIEMMDTNPEFRDK-RSYMKNEHNLHDVLKKFGNNPILNAI 100 (563) T ss_pred eeccCChhhhHhhhhccchhHHHHHhhhccCCC-cchhhhHhhhccccccccc-ccCCCCcccHHHHHHHhhcchHHHHH Confidence 00 0111222221111111 11111111000 001100 000000011 1122235778899 Q ss_pred HHHHHHhhhh-------------Cceeeecchhh-------------hhc----ccCCcc-CCHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 60 ILQLSSDLAI-------------VKINAEKKKNQ-------------GII----DNPSTN-ANKHGFWQSMFAQLLLGGE 108 (392) Q Consensus 60 i~~ia~~ia~-------------lp~~~~~~~~~-------------~~~----~~PN~~-~t~~~f~~~~~~~l~l~G~ 108 (392) |+.+++.||. +|+++++++.. .++ ..||++ +|+++|++.++.+++++|| T Consensus 101 I~t~~~~vA~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn 180 (563) T protein:vir:99 101 ILTRSNQVAMYCQPARYSEKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQ 180 (563) T ss_pred HHHHHHHHHHHhhhhhhhcccccceeEEeecCCCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCC Confidence 9999988885 57777654321 112 123443 5899999999999999999 Q ss_pred eeEEEe--cccCCceeEEEEeccccceeeecCCCceEEE---EEEecCCcceeeEEEecceEEEec-CCCcc--ccccCC Q lcl|Aclame:pro 109 AFAYRW--RNANGADMKWEYLRPSQVNTYYFEYENGMYY---NITFDDPKIEPILQAPQSDLIHMK-LLSID--GGKTGI 180 (392) Q Consensus 109 a~~~i~--r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~vih~~-~~~~~--~~~~G~ 180 (392) +|++++ |+..|++++|+|++|++|++..+.++..... +++..+ ++....++++++||++ ++..+ ...+|+ T Consensus 181 ~~~~~~~~rd~~G~~~~L~pl~p~~V~v~~~~~g~~~~~~~~y~~~~~--g~~~~~~~~~evI~~~~~~~~d~~~~~~G~ 258 (563) T protein:vir:99 181 VNFEKVFNKNNKTKLEKFIAVDPSTIFYATDKKGKIIKGGKRFVQVVD--KRVVASFTSRELAMGIRNPRTELSSSGYGL 258 (563) T ss_pred eEEEEEEEecCCCceEEEEEeCCceeEEEECCCCceeccceeEEEEeC--CceeEEecCcceEEEeccCCCCcccCcccc Confidence 999865 7888999999999999999999887654432 122221 2345678888877554 44332 246799 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCC--chH--HHHHHHHHHHhccccCCce-eeccCCceEEec Q lcl|Aclame:pro 181 SPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGL--LSD--KDKASRSRSFMKRSRSGGP-VVLDDLEEFTAL 255 (392) Q Consensus 181 s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~--~~~--~~~~~~~~~~~~~~~~g~~-~vl~~g~~~~~l 255 (392) ||+.+++..|..+.++++++.++|+||++|+|+|+++.+.. +++ +.++.|.+.+.|..|+|++ +|+++|++|+++ T Consensus 259 Spi~~a~~~i~~~~~~~~~~~~~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl~~G~~~~~l 338 (563) T protein:vir:99 259 SEVEIAMKEFIAYNNTESFNDRFFSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSGINGSWQIPVVMADDIKFVNM 338 (563) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceEEcCCCceEEec Confidence 99999999999999999999999999999999999986543 222 3355667778889999996 789999999999 Q ss_pred cCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 256 EIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-------------QSSIQQISGMYASALNRYLRPAISELEYKL 322 (392) Q Consensus 256 ~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-------------~~~~~~~~~~~~~~l~p~l~~i~~~l~~~l 322 (392) +.++.|+||+|++++++++||++|||||++||..+.+ .+..++...|++.+|.|++..|+++|+++| T Consensus 339 ~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L 418 (563) T protein:vir:99 339 TPTANDMQFEKWLNYLINIISALYGIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRFIEDLVNRHI 418 (563) T ss_pred cCChhHHHHHHHHHHHHHHHHHHhCCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhh Confidence 9999999999999999999999999999999964322 122345678999999999999999999999 Q ss_pred hhhhccchhh-hhhcChHHHHHHH--HHHHhCCccCHHHHHHHHHhCCCCCcccccc-cCCCC----------------- Q lcl|Aclame:pro 323 SDHISVNMRP-AIDPLGDNYLSTI--STATRWGALAENQATFVLQEAGYIPKDLPAP-ENTNK----------------- 381 (392) Q Consensus 323 ~~~~~~d~~~-~~~~~~~~~~~~~--~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~-~~~~~----------------- 381 (392) +++++..+.. +.+.|...+.+.+ ..++++|++|+||+|++++..+++..|.... -++.+ T Consensus 419 ~~~~~~~~~~~f~r~D~~~~~e~~~~~~~~~~G~lT~NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (563) T protein:vir:99 419 ISEYGDKYTFQFVGGDTKSATDKLNILKLETQIFKTVNEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQYNDGKQKE 498 (563) T ss_pred chhcccccEEEeccCCHHHHHHHHHHHHHhcCCccCHHHHHHHhCCCCCCCcceeecccccccccccccccCCCccccch Confidence 8765332221 3456666666544 3568899999999999886555443232111 01000 Q ss_pred ----CC---CCCCCCCCC Q lcl|Aclame:pro 382 ----KT---TGQSNEPVP 392 (392) Q Consensus 382 ----~~---~gd~~~p~p 392 (392) .. .+++++|.| T Consensus 499 ~~~~~~~~~~~~~~~~~~ 516 (563) T protein:vir:99 499 RLQMMMSLLEGDNDDSEE 516 (563) T ss_pred hhhhcccccCCCCCCCCC Confidence 00 111111111 No 81 >protein:vir:95599 Length: 563 # NCBI annotation: ORF014 # Family: family:all:2446 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240900;genbank:gi:66394963;genbank:GeneID:5132540 Probab=100.00 E-value=2.5e-60 Score=347.30 Aligned_cols=388 Identities=11% Similarity=0.020 Sum_probs=255.2 Q ss_pred Cc---------------chhhhhhcccccccccccccccccCcch--hhhhhhccCCCCcccc----hhhhhcchHHHHH Q lcl|Aclame:pro 1 MI---------------LPILNFINQTNDPPEAGSVQSYFPDGND--AQIMESLLGDNNEWVS----ARAALRNSDLFSI 59 (392) Q Consensus 1 m~---------------Mg~~n~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~al~~~~v~~~ 59 (392) .+ -..++.+.+....... .+..++....+ .++... .+...-..+ -+..-.++.+.+| T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~n~i~~~~ 100 (563) T protein:vir:95 23 VPIDEGLQANIKKIEQDNKEYQDLTKSLYGQQQ-AYAEPFIEMMDTNPEFRDK-RSYMKNEHNLHDVLKKFGNNPILNAI 100 (563) T ss_pred eeccCChhhhHhhhhccchhHHHHHhhhccCCC-cchhhhHhhhccccccccc-ccCCCCcccHHHHHHHhhcchHHHHH Confidence 00 0111222221111111 11111111000 001100 000000011 1122235778899 Q ss_pred HHHHHHhhhh-------------Cceeeecchhh-------------hhc----ccCCcc-CCHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 60 ILQLSSDLAI-------------VKINAEKKKNQ-------------GII----DNPSTN-ANKHGFWQSMFAQLLLGGE 108 (392) Q Consensus 60 i~~ia~~ia~-------------lp~~~~~~~~~-------------~~~----~~PN~~-~t~~~f~~~~~~~l~l~G~ 108 (392) |+.+++.||. +|+++++++.. .++ ..||++ +|+++|++.++.+++++|| T Consensus 101 I~t~~~~vA~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn 180 (563) T protein:vir:95 101 ILTRSNQVAMYCQPARYSEKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQ 180 (563) T ss_pred HHHHHHHHHHHhhhhhhhcccccceeEEeecCCCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCC Confidence 9999988885 57777654321 112 123443 5899999999999999999 Q ss_pred eeEEEe--cccCCceeEEEEeccccceeeecCCCceEEE---EEEecCCcceeeEEEecceEEEec-CCCcc--ccccCC Q lcl|Aclame:pro 109 AFAYRW--RNANGADMKWEYLRPSQVNTYYFEYENGMYY---NITFDDPKIEPILQAPQSDLIHMK-LLSID--GGKTGI 180 (392) Q Consensus 109 a~~~i~--r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~vih~~-~~~~~--~~~~G~ 180 (392) +|++++ |+..|++++|+|++|++|++..+.++..... +++..+ ++....++++++||++ ++..+ ...+|+ T Consensus 181 ~~~~~~~~rd~~G~~~~L~pl~p~~V~v~~~~~g~~~~~~~~y~~~~~--g~~~~~~~~~evI~~~~~~~~d~~~~~~G~ 258 (563) T protein:vir:95 181 VNFEKVFNKNNKTKLEKFIAVDPSTIFYATDKKGKIIKGGKRFVQVVD--KRVVASFTSRELAMGIRNPRTELSSSGYGL 258 (563) T ss_pred eEEEEEEEecCCCceEEEEEeCCceeEEEECCCCceeccceeEEEEeC--CceeEEecCcceEEEeccCCCCcccCcccc Confidence 999865 7888999999999999999999887654432 122221 2345678888877554 44332 246799 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCC--chH--HHHHHHHHHHhccccCCce-eeccCCceEEec Q lcl|Aclame:pro 181 SPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGL--LSD--KDKASRSRSFMKRSRSGGP-VVLDDLEEFTAL 255 (392) Q Consensus 181 s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~--~~~--~~~~~~~~~~~~~~~~g~~-~vl~~g~~~~~l 255 (392) ||+.+++..|..+.++++++.++|+||++|+|+|+++.+.. +++ +.++.|.+.+.|..|+|++ +|+++|++|+++ T Consensus 259 Spi~~a~~~i~~~~~~~~~~~~~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl~~G~~~~~l 338 (563) T protein:vir:95 259 SEVEIAMKEFIAYNNTESFNDRFFSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSGINGSWQIPVVMADDIKFVNM 338 (563) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceEEcCCCceEEec Confidence 99999999999999999999999999999999999986543 222 3355667778889999996 789999999999 Q ss_pred cCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 256 EIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-------------QSSIQQISGMYASALNRYLRPAISELEYKL 322 (392) Q Consensus 256 ~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-------------~~~~~~~~~~~~~~l~p~l~~i~~~l~~~l 322 (392) +.++.|+||+|++++++++||++|||||++||..+.+ .+..++...|++.+|.|++..|+++|+++| T Consensus 339 ~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L 418 (563) T protein:vir:95 339 TPTANDMQFEKWLNYLINIISALYGIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRFIEDLVNRHI 418 (563) T ss_pred cCChhHHHHHHHHHHHHHHHHHHhCCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhh Confidence 9999999999999999999999999999999964322 122345678999999999999999999999 Q ss_pred hhhhccchhh-hhhcChHHHHHHH--HHHHhCCccCHHHHHHHHHhCCCCCcccccc-cCCCC----------------- Q lcl|Aclame:pro 323 SDHISVNMRP-AIDPLGDNYLSTI--STATRWGALAENQATFVLQEAGYIPKDLPAP-ENTNK----------------- 381 (392) Q Consensus 323 ~~~~~~d~~~-~~~~~~~~~~~~~--~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~-~~~~~----------------- 381 (392) +++++..+.. +.+.|...+.+.+ ..++++|++|+||+|++++..+++..|.... -++.+ T Consensus 419 ~~~~~~~~~~~f~r~D~~~~~e~~~~~~~~~~G~lT~NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (563) T protein:vir:95 419 ISEYGDKYTFQFVGGDTKSATDKLNILKLETQIFKTVNEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQYNDGKQKE 498 (563) T ss_pred chhcccccEEEeccCCHHHHHHHHHHHHHhcCCccCHHHHHHHhCCCCCCCcceeecccccccccccccccCCCccccch Confidence 8765332221 3456666666544 3568899999999999886555443232111 01000 Q ss_pred ----CC---CCCCCCCCC Q lcl|Aclame:pro 382 ----KT---TGQSNEPVP 392 (392) Q Consensus 382 ----~~---~gd~~~p~p 392 (392) .. .+++++|.| T Consensus 499 ~~~~~~~~~~~~~~~~~~ 516 (563) T protein:vir:95 499 RLQMMMSLLEGDNDDSEE 516 (563) T ss_pred hhhhcccccCCCCCCCCC Confidence 00 111111111 No 82 >protein:vir:94002 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764318;genbank:gi:115315632;genbank:GeneID:5176589 Probab=100.00 E-value=9.8e-61 Score=349.58 Aligned_cols=328 Identities=15% Similarity=0.116 Sum_probs=236.7 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) ||||+.+.+............. .. ..+...++..++|++||++||++||++|++++++.. T Consensus 1 Mg~f~~~~~~~~~~~~~~~~~~-------------~~----~~~~~~~~~~~~v~~~v~~IA~~iA~lp~~~~~~~~~~~ 63 (378) T protein:vir:94 1 MNLFGKVVSFSRGKLNNDTQRV-------------TA----WQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV 63 (378) T ss_pred CCccccchhcccccccCCccee-------------ee----eccchhHHHHHHHHHHHHHHHhhhhhCceeeEEEcccCc Confidence 9999877653322211111110 00 112233566788999999999999999999875321 Q ss_pred --------------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEeccc-CCceeEEEEeccccceeeecCCCceEE Q lcl|Aclame:pro 80 --------------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNA-NGADMKWEYLRPSQVNTYYFEYENGMY 144 (392) Q Consensus 80 --------------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~-~G~~~~l~~l~~~~v~~~~~~~~~~~~ 144 (392) ..++.+||++||+++||+.++.+++++||+|++++++. .|+++.++|.. T Consensus 64 ~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~~~~~g~~~~l~p~~---------------- 127 (378) T protein:vir:94 64 GSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD---------------- 127 (378) T ss_pred ccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeeCCCceEEEEEecC---------------- Confidence 12345899999999999999999999999999977554 46666655421 Q ss_pred EEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH Q lcl|Aclame:pro 145 YNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD 224 (392) Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~ 224 (392) ..++++.++|||++++ .+...|.||++.+...+... +++ +.++|++++++...++. T Consensus 128 -----------~~~~~~~~diiH~~~~--~~~~~g~s~l~~~~~~i~~~----------~~~-~~~~gil~~~~~l~~~~ 183 (378) T protein:vir:94 128 -----------DKKEYKPEELVRLTSP--FYINEDTSILDNALASIQTK----------LEQ-GKLRGLLKINAFLDIDN 183 (378) T ss_pred -----------CeeEeeeeeeEEecCc--CCccchhHHHHHHHHHHHHH----------Hhc-ccccceeeeCCcCCHHH Confidence 1245788999999964 34456999999888776532 333 46899999988765543 Q ss_pred --HHHHHHHHHH---hccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHH Q lcl|Aclame:pro 225 --KDKASRSRSF---MKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQI 299 (392) Q Consensus 225 --~~~~~~~~~~---~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~ 299 (392) +.++++.+.+ .+..++|++++|++|++|++++.++.++|+ +.+++++++||++|||||.+|+++ .+.++. T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVP~~~l~~~----~se~~~ 258 (378) T protein:vir:94 184 TQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLGT----ASQEQQ 258 (378) T ss_pred HHHHHHHHHHHHHHhhcccccccceecCCCceEEEccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhcCC----hHHHHH Confidence 2333444433 344678899999999999999999999996 677899999999999999999642 345678 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh--------------hccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHh Q lcl|Aclame:pro 300 SGMYASALNRYLRPAISELEYKLSDH--------------ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQE 365 (392) Q Consensus 300 ~~~~~~~l~p~l~~i~~~l~~~l~~~--------------~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~ 365 (392) .+|++.+|.|++.+|+++|+++|++. +.||.+.+++.|.+++++.+.+++++|++|+||+|++++. T Consensus 259 ~~f~~~tL~P~~~~ie~~l~~~Ll~~~er~~g~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl 338 (378) T protein:vir:94 259 IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGE 338 (378) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhHhhhhhhcccccceeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCC Confidence 89999999999999999999999752 5689999999999999999999999999999999998855 Q ss_pred CCCCCcccc-cccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 366 AGYIPKDLP-APENTNKKTTGQSNEPVP 392 (392) Q Consensus 366 ~g~~~~e~~-~~~~~~~~~~gd~~~p~p 392 (392) .+++..|.. ..-|..|+...+.+++.. T Consensus 339 ~p~~gGD~~~~~~n~~~~~~~~~~~~~~ 366 (378) T protein:vir:94 339 QPIEGGDVYIANLNAVAVKNLSDLQGSR 366 (378) T ss_pred CCCCCCCeeeecccccccccchhhcCCc Confidence 544322211 111222211111111100 No 83 >protein:vir:93867 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764264;genbank:gi:115315577;genbank:GeneID:5141561 Probab=100.00 E-value=1.4e-60 Score=348.76 Aligned_cols=328 Identities=14% Similarity=0.130 Sum_probs=235.8 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) ||||+.+.+............. . ...+...+++.++|++||++||++||++|++++++.. T Consensus 1 Mg~f~~~~~f~~~~~~~~~~~~---------~--------~~~~~~~~~~~~~v~~~i~~Ia~~iA~lp~~~~~~~~~~~ 63 (378) T protein:vir:93 1 MNLFGKVVSFSRGKLNNDTQRV---------T--------AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV 63 (378) T ss_pred CccchhhhhhhccccCCCccee---------e--------ecccchhHHHHHHHHHHHHHHHhhhhhCceeeEEEccccc Confidence 9999987653222111111100 0 0112234567788999999999999999999875321 Q ss_pred --------------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccC-CceeEEEEeccccceeeecCCCceEE Q lcl|Aclame:pro 80 --------------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNAN-GADMKWEYLRPSQVNTYYFEYENGMY 144 (392) Q Consensus 80 --------------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~-G~~~~l~~l~~~~v~~~~~~~~~~~~ 144 (392) ..++.+||++||+++||+.++.+++++||+|++++++.. |++..++|.. T Consensus 64 ~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~i~~~~~~~~g~~~~l~~~~---------------- 127 (378) T protein:vir:93 64 GSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGELLDLLFAD---------------- 127 (378) T ss_pred ccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCceEEEEEecC---------------- Confidence 123458999999999999999999999999999887643 5555444321 Q ss_pred EEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH Q lcl|Aclame:pro 145 YNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD 224 (392) Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~ 224 (392) ..+++++++|||+|++ .+...|.|++..+...+. .++.+| .++|++++++...++. T Consensus 128 -----------~~~~~~~~diih~r~~--~~~~~~~s~l~~~~~~i~----------~~~~~~-~~~g~l~~~~~l~~~~ 183 (378) T protein:vir:93 128 -----------DKKEYKTEELVRLTSP--FYINEDTSILDNALASIQ----------TKLEQG-KLRGLLKINAFLDIDN 183 (378) T ss_pred -----------CeeEeccceeEEecCc--cccchhhHHHHHHHHHHH----------HHHhcC-cccceeeeCCcCCHHH Confidence 1246789999999964 334568899887766553 344454 6999999988755442 Q ss_pred --HHHHHHHHHH---hccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHH Q lcl|Aclame:pro 225 --KDKASRSRSF---MKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQI 299 (392) Q Consensus 225 --~~~~~~~~~~---~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~ 299 (392) +.++++.+.+ .+..++|++++|++|++|++++.++.|+|+ +.+++++++||++|||||++|+++ .+.++. T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~g~----~~e~~~ 258 (378) T protein:vir:93 184 TQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLGT----ATQEQQ 258 (378) T ss_pred HHHHHHHHHHHHHHhhcccccccceEcCCCceEEEccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhcCC----cHHHHH Confidence 3333444433 345678899999999999999999999996 777899999999999999999643 335678 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh--------------hccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHh Q lcl|Aclame:pro 300 SGMYASALNRYLRPAISELEYKLSDH--------------ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQE 365 (392) Q Consensus 300 ~~~~~~~l~p~l~~i~~~l~~~l~~~--------------~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~ 365 (392) ..|++.+|.|++++|+++|+++|++. +.||.+.+++.|.+++++.+..++++|++|+||+|++++. T Consensus 259 ~~f~~~tl~P~~~~ie~~l~~kLl~~~er~~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl 338 (378) T protein:vir:93 259 IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGE 338 (378) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhHhhhhhhcccccceeeccchhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCC Confidence 89999999999999999999999742 6788999999999999999999999999999999998855 Q ss_pred CCCCCccccc-ccCCCCC------CCCCCCCCCC Q lcl|Aclame:pro 366 AGYIPKDLPA-PENTNKK------TTGQSNEPVP 392 (392) Q Consensus 366 ~g~~~~e~~~-~~~~~~~------~~gd~~~p~p 392 (392) .+++..|... .-|..|+ .++..++... T Consensus 339 ~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~ 372 (378) T protein:vir:93 339 QPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTST 372 (378) T ss_pred CCCCCCCeeeeccccccccchhhhcCccCCCCCC Confidence 5544322211 1111111 1111111111 No 84 >protein:vir:79772 Length: 648 # NCBI annotation: portal protein # Family: family:all:3222 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429612;genbank:gi:156564103;genbank:GeneID:5525537 Probab=100.00 E-value=1.4e-59 Score=343.25 Aligned_cols=385 Identities=8% Similarity=-0.014 Sum_probs=254.1 Q ss_pred Ccchhhhhhcccccccccccc----cccccCcchh--hhhhhccCCC----Ccccc----hhhhhcchHHHHHHHHHHHh Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSV----QSYFPDGNDA--QIMESLLGDN----NEWVS----ARAALRNSDLFSIILQLSSD 66 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~----~~~~~----~~~al~~~~v~~~i~~ia~~ 66 (392) --|+|=..-... ++..... +.+......+ .......++. .-.++ .+.+..+|.|++||++||++ T Consensus 32 ~~~~~~~~p~~~--~~~~~~~~~~~~d~~~~~~~r~g~~~~~~~~g~~~~~epp~d~~~l~~l~~~np~V~~aI~iia~~ 109 (648) T protein:vir:79 32 ESMQLGEAPGAM--PKGGGGGGSAKRDPKMSLVKRIGLAIMDGGGGGRDFEEPEFDFNEITSAYNTEGYVRQAVDKYIEM 109 (648) T ss_pred cccccCCCcccc--CCCCcccccccccchhHHHHHhHHHHHhhcCCccccccCCcCHHHHHHHHhcChHHHHHHHHHHHH Confidence 112221000000 0000000 0000000000 0000000000 00111 12333589999999999999 Q ss_pred hhhCceeeecchhh--------hhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCc---------------eeE Q lcl|Aclame:pro 67 LAIVKINAEKKKNQ--------GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGA---------------DMK 123 (392) Q Consensus 67 ia~lp~~~~~~~~~--------~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~---------------~~~ 123 (392) ||++||.+..++.. .++.+||++||+++|++.++.+++++||||++++|+.+|. +.+ T Consensus 110 ia~l~~~i~~~~~~~~~~~~~~~ll~rPn~~~t~~~f~~~l~~~lll~GNAYveiiRd~~G~~~~~l~~~~~~~~~~v~~ 189 (648) T protein:vir:79 110 MFKADWDFVSKNPNAVEYIRMRFTLMAEATQIPTNQLFIEIAEDLVKYCNVVIAKSRAKDALPFQGMNVMGVGDSMPVAG 189 (648) T ss_pred HhhCcceEEecCCccchhhHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCeEEEEEecCCCccchhhhhhhhccccceee Confidence 99999998765432 3467999999999999999999999999999999998884 478 Q ss_pred EEEeccccceeeecCCCceEEEEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 124 WEYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISS 203 (392) Q Consensus 124 l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~ 203 (392) +||++|.+|++..+.++....|.+... ..+..+.+++++|||+++..+.+..+|+||+..++..|....+++++..++ T Consensus 190 l~pl~p~~v~v~~d~~g~~~~Y~y~~~--g~~~~~~~~~~dIIHik~~~~~d~~~GlSpi~~a~~aI~l~~aa~~~~~~f 267 (648) T protein:vir:79 190 YFPLNLASMKVKRDKFGMIKGWQQEQE--GQDKPQKFKPEDIVHIYYKREKGRAFGTPWLLPALDDIRALRQVEENVLRL 267 (648) T ss_pred eEeecCceeEEEEcCCCceeeeEEEec--CCceeEEecCccEEEEccCCCCCCceeccHHHHHHHHHHHHHHHHHHHHHH Confidence 999999999999988877665555443 334567899999999998766667789999999999999999999999999 Q ss_pred HHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeeccCCceEEeccC----ChhhHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 204 LNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEI----KSNVAQLLSQTDWTSKQYAKVY 279 (392) Q Consensus 204 ~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~----~~~d~~~~e~~~~~~~~Ia~~f 279 (392) |+||++|+++++++.+....+..++ +.+.+.+.-+ +..+.+++.+++.+++ +++|+||++++++++++||++| T Consensus 268 F~NGa~P~gil~~~~~~~~~e~~k~-~~e~~~~~~~--~~~i~gg~v~~~~~~i~~~~s~~dlqfle~rk~~~~eIa~aF 344 (648) T protein:vir:79 268 VYRNLHPLWHVKVGLEQEGFGAEEG-EVDLVRGEVE--NMDVEGGMVTTERVNISSIASNQIIDAKEYLKHFEQRAFTVL 344 (648) T ss_pred HhccCCccEEEEeCCCccchHHHHH-HHHHHHHhcc--cccccccccccceeeccccCCHHHHHHHHHHHHHHHHHHHHh Confidence 9999999999998654333332222 2222222111 1233344444444333 5689999999999999999999 Q ss_pred cccHHHcCCcccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------------hhccchhhhhhcChHHHH Q lcl|Aclame:pro 280 GLPDSYIGGQGDQ-QSSIQQISGMYASALNRYLRPAISELEYKLSD----------------HISVNMRPAIDPLGDNYL 342 (392) Q Consensus 280 gVP~~~lg~~~~~-~~~~~~~~~~~~~~l~p~l~~i~~~l~~~l~~----------------~~~~d~~~~~~~~~~~~~ 342 (392) ||||++||..++. .++.++...+|..++.|+...++..++.++.+ +++|+...+++.|...++ T Consensus 345 gVPP~lLG~~~~ss~stae~~~~~~~~~i~~l~~~i~~~le~~~~~~ll~e~~l~~~l~~d~~ieF~~~~Llr~D~~~~a 424 (648) T protein:vir:79 345 GVSELMMGRGGTASRSTGDNLSSDFKDRIKALQKVMATFINEFMVKEILMEGGFDPVLNPDDKVEFRFNEIDMDSKIKLE 424 (648) T ss_pred CCCHhHcccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccceEEEeecccchhhHHHHH Confidence 9999999975543 35566777788888999888887777655432 246777777888888889 Q ss_pred HHHHHHHhCCccCHHHHHHHHHhCCCCCcccccccCCCCCCC-----CCCCCCCC Q lcl|Aclame:pro 343 STISTATRWGALAENQATFVLQEAGYIPKDLPAPENTNKKTT-----GQSNEPVP 392 (392) Q Consensus 343 ~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~~~~~~~~~-----gd~~~p~p 392 (392) +.+..++++|++|+||+|++++..+++..+.+..-..++.+. .+...|.| T Consensus 425 ~~~~~l~~~GilT~NEaR~~lGlpPi~~g~~~~~l~~~~~~~~~~~~~~~~~~~~ 479 (648) T protein:vir:79 425 NQAVFLYEHNAISEDEMRELIGRDPVDDGEGRAKMHLQMVTIAQATALAALAPTP 479 (648) T ss_pred HHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCccccccccccchhccccccCCCCC Confidence 999999999999999999987443332111111001111110 01111112 No 85 >protein:vir:1661 Length: 378 # NCBI annotation: unknown # Family: family:all:2379 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044950;genbank:gi:9629657;genbank:GeneID:1261302 Probab=100.00 E-value=1.7e-59 Score=342.79 Aligned_cols=328 Identities=15% Similarity=0.125 Sum_probs=234.4 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) ||||+.+.+..........+.. .. ..+...+++.++|++||++||++||+||++++++.. T Consensus 1 Mg~f~~~~~~~~~~~~~~~~~~-------------~~----~~~~~~~~~~~~v~~~i~~Ia~~iA~l~~~~~~~~~~~~ 63 (378) T protein:vir:16 1 MNLFGKVVSFSRGKLNNDTQRV-------------TA----WQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV 63 (378) T ss_pred CccchhhhhhhcccccCCccee-------------ee----cccchhhHHHHHHHHHHHHHHhhhhhCceeEEEEccccc Confidence 9999877543222211111100 00 112234567788999999999999999999875321 Q ss_pred --------------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccC-CceeEEEEeccccceeeecCCCceEE Q lcl|Aclame:pro 80 --------------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNAN-GADMKWEYLRPSQVNTYYFEYENGMY 144 (392) Q Consensus 80 --------------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~-G~~~~l~~l~~~~v~~~~~~~~~~~~ 144 (392) +.++.+||++||+++||+.++.+|+++||+|++++|+.. |++..++|.. T Consensus 64 ~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~d~~~g~~~~l~~~~---------------- 127 (378) T protein:vir:16 64 GSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGELLDLLFAD---------------- 127 (378) T ss_pred ccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCceEEEEEecC---------------- Confidence 223458999999999999999999999999999988754 5554444321 Q ss_pred EEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH Q lcl|Aclame:pro 145 YNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD 224 (392) Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~ 224 (392) ..+.++.++|||+|++ .+...|.|++..+...+. ..+. ++.++|+++.+....++. T Consensus 128 -----------~~~~~~~~diih~r~~--~~~~~~~s~l~~~~~~i~----------~~~~-~~~~~g~l~~~~~l~~~~ 183 (378) T protein:vir:16 128 -----------DKKEYKPEELVRLTSP--FYINEDTSILDNALASIQ----------TKLE-QGKLRGLLKINAFLDIDN 183 (378) T ss_pred -----------CeeEecccceEEecCc--cCccchhHHHHHHHHHHH----------HHHh-cCccceeeEeCCcCCHHH Confidence 1245788999999964 233468888888776553 2333 456899999988765543 Q ss_pred --HHHHHHHHHH---hccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHH Q lcl|Aclame:pro 225 --KDKASRSRSF---MKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQI 299 (392) Q Consensus 225 --~~~~~~~~~~---~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~ 299 (392) +.++++.+.+ .+..++|++++|++|++|++++.++.|+|+ +.+++++++||++|||||.+|+++ ++.++. T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~g~----~~e~~~ 258 (378) T protein:vir:16 184 TQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLGT----ASQEQQ 258 (378) T ss_pred HHHHHHHHHHHHHHhhcccccccceEcCCCceEEEccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhcCC----chHHHH Confidence 2333444433 355678999999999999999999999997 556899999999999999999652 335678 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh--------------hccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHh Q lcl|Aclame:pro 300 SGMYASALNRYLRPAISELEYKLSDH--------------ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQE 365 (392) Q Consensus 300 ~~~~~~~l~p~l~~i~~~l~~~l~~~--------------~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~ 365 (392) .+|++++|.|++++|+++|+++|++. +.||.+.+++.|.+++++.+.+++++|++|+||+|++++. T Consensus 259 ~~f~~~tl~P~~~~ie~~l~~kLl~~~e~~~~~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~ 338 (378) T protein:vir:16 259 IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGE 338 (378) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhcccccceeeccchhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCC Confidence 89999999999999999999999742 5688899999999999999999999999999999998855 Q ss_pred CCCCCccccc-ccCCCCCC------CCCCCCCCC Q lcl|Aclame:pro 366 AGYIPKDLPA-PENTNKKT------TGQSNEPVP 392 (392) Q Consensus 366 ~g~~~~e~~~-~~~~~~~~------~gd~~~p~p 392 (392) .+++..|... .-|..++. ++..++... T Consensus 339 ~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~ 372 (378) T protein:vir:16 339 QPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTST 372 (378) T ss_pred CCCCCCCeEeeccccccccchhhhcCccCCCCCC Confidence 5443222111 11111111 111111101 No 86 >protein:vir:94869 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762515;genbank:gi:115304214;genbank:GeneID:5141182 Probab=100.00 E-value=2.1e-58 Score=336.74 Aligned_cols=325 Identities=15% Similarity=0.140 Sum_probs=231.5 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) ||||+.+++........... . ....++...+++.++|++||++||++||+||++++++.. T Consensus 1 M~if~~~~~~~~~~~~~~~~---------~--------~~~~~~~~~~~~~~~v~~~v~~Ia~~iA~lp~~~~~~~~~~~ 63 (378) T protein:vir:94 1 MNLFGKVVSFSRGKLNNDTQ---------R--------VTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV 63 (378) T ss_pred CchhHHhHhhhhcccccCcc---------e--------eeeeecchhhhhhHHHHHHHHHHHHhHhhCceeeeeeccccc Confidence 99999886532211111100 0 111234455677889999999999999999999876421 Q ss_pred --------------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEe-cccCCceeEEEEeccccceeeecCCCceEE Q lcl|Aclame:pro 80 --------------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRW-RNANGADMKWEYLRPSQVNTYYFEYENGMY 144 (392) Q Consensus 80 --------------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~-r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~ 144 (392) +.++.+||++||+++||+.++.++++.||||++++ ++..|.+..+++ T Consensus 64 ~~~~~~~~~~~~l~~lLn~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~~~~------------------ 125 (378) T protein:vir:94 64 GSDTLISMAGSDLDEVLNWSSKGERNSMEFWQKVIKKLLTTRYIDLYPIFDSETGELLDLLF------------------ 125 (378) T ss_pred ccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEE------------------ Confidence 23456899999999999999999999999999854 444455443332 Q ss_pred EEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH Q lcl|Aclame:pro 145 YNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD 224 (392) Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~ 224 (392) ..+ ..++++++|+|++.+...+ .+.+++..+...+. ..+++ +.++|+++.+....++. T Consensus 126 ----~~~-----~~~~~~~dvih~~~~~~~~--~~~~~~~~~~~~~~----------~~~~~-~~~~g~l~~~~~l~~~~ 183 (378) T protein:vir:94 126 ----AND-----KKEYKPEELVRLTSPFYIN--EDTSILDNALASIQ----------TKLEQ-GKLRGLLKINAFLDIDN 183 (378) T ss_pred ----ecC-----cEEechhceeeecCcCCcc--cchhHHHHHHHHHH----------HHHhh-CCcccceeeCCcCCHHH Confidence 211 1467899999999654333 35566666654433 22333 46889999988766543 Q ss_pred --HHHHHHH---HHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHH Q lcl|Aclame:pro 225 --KDKASRS---RSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQI 299 (392) Q Consensus 225 --~~~~~~~---~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~ 299 (392) +.++++. +.+.+..++|++++|++|++|++++.++.++|+ +.+++++++||++|||||++|+++ .+.++. T Consensus 184 ~~~~~e~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgvPp~~l~g~----~~e~~~ 258 (378) T protein:vir:94 184 TQEYREKALATIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLGT----ATQEQQ 258 (378) T ss_pred HHHHHHHHHHHHHHhhcccccccceeccCCceEEEccCChHHhhH-HHHHHHHHHHHHHhCCCHHHhcCC----chHHHH Confidence 2223333 334456778899999999999999999999996 778999999999999999999653 235677 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh--------------hccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHh Q lcl|Aclame:pro 300 SGMYASALNRYLRPAISELEYKLSDH--------------ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQE 365 (392) Q Consensus 300 ~~~~~~~l~p~l~~i~~~l~~~l~~~--------------~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~ 365 (392) .+|++.+|.|++.+|+++|+++|++. +.||.+.+++.|.+++++.+..++++|++|+||+|++++. T Consensus 259 ~~f~~~tl~P~~~~ie~~l~~~Ll~~~e~~~g~~~~~~~~~~f~~~~l~~~d~~~~~e~~~~~~~~G~~t~NE~R~~~g~ 338 (378) T protein:vir:94 259 IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGE 338 (378) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhHhhhhhhhcccceeEeecchhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCC Confidence 89999999999999999999999632 5688899999999999999999999999999999998865 Q ss_pred CCCCCcccccc-cCCCCC------C---------CCCCCC Q lcl|Aclame:pro 366 AGYIPKDLPAP-ENTNKK------T---------TGQSNE 389 (392) Q Consensus 366 ~g~~~~e~~~~-~~~~~~------~---------~gd~~~ 389 (392) .+++..|.... -|.-++ . +.+.|| T Consensus 339 ~p~~ggd~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:94 339 QPIEGGDVYIANLNAVAVKNLSDLQGNRKDVTSTDETNNQ 378 (378) T ss_pred CCCCCCCeeeecccccchhcchhcccccCCCCCCCCCCCC Confidence 55543221111 111111 1 112222 No 87 >protein:vir:858 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047117;genbank:gi:9630570;genbank:GeneID:1261758 Probab=100.00 E-value=2.8e-58 Score=336.09 Aligned_cols=328 Identities=14% Similarity=0.120 Sum_probs=227.6 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) ||||++++...........++ .+ ..++...++.+++|++||++||++||+||++++++.. T Consensus 1 M~~f~k~~~~~~~~~~~~~~~---------~~--------~~~~~~~~~~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~~ 63 (378) T protein:vir:85 1 MNLFGKVVSFSRGKLNNDTQR---------VT--------AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV 63 (378) T ss_pred CchhhhhhhhhhcccccCCcc---------ee--------eeeccchhhhhHHHHHHHHHHHHhHhhCceeEEEEecccc Confidence 999997644322111111100 01 1233445678889999999999999999999986432 Q ss_pred --------------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEe-cccCCceeEEEEeccccceeeecCCCceEE Q lcl|Aclame:pro 80 --------------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRW-RNANGADMKWEYLRPSQVNTYYFEYENGMY 144 (392) Q Consensus 80 --------------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~-r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~ 144 (392) ..++.+||++||+++||+.++.+++++||||++++ ++..|.+...+ T Consensus 64 ~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~~~------------------- 124 (378) T protein:vir:85 64 GSDTLISMAGSDLDEVLNWSYKGEHNSMEFWQKVIKKLLCTRYVDLYPIFDSETGELLDLL------------------- 124 (378) T ss_pred ccccccccccchHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEeecCCCceEEEEE------------------- Confidence 23456899999999999999999999999999864 44445443332 Q ss_pred EEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH Q lcl|Aclame:pro 145 YNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD 224 (392) Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~ 224 (392) +..+ ...+..++|||++.+... ..+.+.+..+...+ ...++ ++.++|+++.++....+. T Consensus 125 ---~~~~-----~~~~~~~dvih~~~~~~~--~~~~~~~~~a~~~~----------~~~~~-~~~~~g~l~~~~~l~~~~ 183 (378) T protein:vir:85 125 ---FAND-----KKEYKPEELVRLVSPFYI--NEDTSILDNALASI----------QTKLE-QGKLRGLLKINAFLDIDN 183 (378) T ss_pred ---ecCC-----CEEEcccceEEEecCcCc--cchhhHHHHHHHHH----------HHHHh-cCCcceEEEeCCcCCHHH Confidence 2211 135677899999854221 22344444443332 23343 457899999988765543 Q ss_pred --HHHHHHH---HHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHH Q lcl|Aclame:pro 225 --KDKASRS---RSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQI 299 (392) Q Consensus 225 --~~~~~~~---~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~ 299 (392) +.++++. +.+.+..++|++++|++|++|++++.++.++|+ +.+++.+++||++|||||++|++ +++.++. T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~----s~~e~~~ 258 (378) T protein:vir:85 184 TQEYREKALATIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIELIKSELLTGYFMNENILLG----TATQEQQ 258 (378) T ss_pred HHHHHHHHHHHHHHhhcccccccceecCCCceEEeccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhcC----CchHHHH Confidence 2233332 334456788999999999999999999999996 77899999999999999999964 2345677 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh--------------hccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHh Q lcl|Aclame:pro 300 SGMYASALNRYLRPAISELEYKLSDH--------------ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQE 365 (392) Q Consensus 300 ~~~~~~~l~p~l~~i~~~l~~~l~~~--------------~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~ 365 (392) .+|++++|.|++.+|+++|+++|++. +.||...+++.|.+++++.+..++++|++|+||+|++++. T Consensus 259 ~~f~~~tL~P~~~~ie~~l~~kLl~~~er~~~~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~lgl 338 (378) T protein:vir:85 259 IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGE 338 (378) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhccccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCC Confidence 89999999999999999999999742 5688889999999999999999999999999999998855 Q ss_pred CCCCCcccccc-cCCCC------CCCCCCCCCCC Q lcl|Aclame:pro 366 AGYIPKDLPAP-ENTNK------KTTGQSNEPVP 392 (392) Q Consensus 366 ~g~~~~e~~~~-~~~~~------~~~gd~~~p~p 392 (392) .+++..|.... -|.-+ ..+++.++... T Consensus 339 ~p~~gGD~~~~~~N~~~~~~~~~~~~~~~~~~~~ 372 (378) T protein:vir:85 339 QPIEGGDIYIANLNAVAVKNLSDLQGSRKDVAST 372 (378) T ss_pred CCCCCCCeEeecccccccccchhhcCccCCCCCC Confidence 55443222111 11111 11111111111 No 88 >protein:vir:99452 Length: 651 # NCBI annotation: hypothetical protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919077;genbank:gi:119757035;genbank:GeneID:4606105 Probab=100.00 E-value=2.4e-55 Score=320.07 Aligned_cols=382 Identities=15% Similarity=0.050 Sum_probs=258.6 Q ss_pred chhhh-hhcc-----cccccccccccccccCcchhhhhhhccCCCC---cccchhh---hhc-chHHHHHHHHHHHhhhh Q lcl|Aclame:pro 3 LPILN-FINQ-----TNDPPEAGSVQSYFPDGNDAQIMESLLGDNN---EWVSARA---ALR-NSDLFSIILQLSSDLAI 69 (392) Q Consensus 3 Mg~~n-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---al~-~~~v~~~i~~ia~~ia~ 69 (392) |-=-. -.+. .....++....+..+ ..-. ...+....+ -.+++.. .+. ++++++||+.++++||+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~p~~~~~~L~~~~e~~~~~~~~i~~~~~~iag 77 (651) T protein:vir:99 1 MTDTTGETQETKVHVEGLGGEADLAKSPNS--TQIP-DHRIQSHNVGVNPPYNPDRLAAFLELNETLATGIRKKSRYEVG 77 (651) T ss_pred CCCccceeeeeEEEeecccccccccccccc--cccc-hhhhcccCCCCCCCCCHHHHHHHHhcChHHHHHHHHHhhhhhc Confidence 21100 0000 000000000000000 0000 011111111 0123322 223 78899999999999999 Q ss_pred Cceeeecch--------------hh-----------hhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEE Q lcl|Aclame:pro 70 VKINAEKKK--------------NQ-----------GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKW 124 (392) Q Consensus 70 lp~~~~~~~--------------~~-----------~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l 124 (392) +.|.+.-+. .. .....+|+.+|+.++++.++.++..+|++|+.+.++..|.|+.+ T Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~~t~~~i~~~~~~Dle~tGna~ieiIrn~~g~pv~L 157 (651) T protein:vir:99 78 FGFDLVPAQGVDGDDASDAQREVARNFWRGRSSRWQTGPNQAKTPATPERVKELARQDYHGVGWLALEMLTDIEGRPVGL 157 (651) T ss_pred cCceeeecccCCCCccchHHHHHHHHHhhccchhhcccccccCCCCCHHHHHHHHHHHHHHHhhHhhhhhhcCccchhhh Confidence 999875211 00 11344799999999999999999999999999999999999999 Q ss_pred EEeccccceeeecCCC--------------------------------ceEE---------------------------- Q lcl|Aclame:pro 125 EYLRPSQVNTYYFEYE--------------------------------NGMY---------------------------- 144 (392) Q Consensus 125 ~~l~~~~v~~~~~~~~--------------------------------~~~~---------------------------- 144 (392) +.+++..+++..+... ...+ T Consensus 158 ~~lp~~~~Rv~~~~~~~~~~~~~ll~~~pn~~~~~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~d 237 (651) T protein:vir:99 158 AYVPARTVRVRRPQNRFDQPRHPEEGRYVDGDVADIASRGYVQIRNGNRRYFGEAGDRYRGQEVVIDESGDEPTIRYRED 237 (651) T ss_pred hhcChhheeeecccccccchhhhhhhcccccccchhHHHHHHHHHhcCcceEEEeeccccceeeeeccCCcceeEEeccC Confidence 9999987765432100 0000 Q ss_pred --------------EEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCc Q lcl|Aclame:pro 145 --------------YNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNV 210 (392) Q Consensus 145 --------------~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~ 210 (392) +.+.. ...+....+++++|||+|++++.+..+|+||+..+..++..+.++++++.++|+||++| T Consensus 238 ~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~eViHir~~~~~~g~~G~spl~~a~~~i~~a~~a~~~~~~~f~NG~~p 315 (651) T protein:vir:99 238 EESEREPIFVDRETGDVTT--GDANGLENRPANELIFIPNPSILEDDYGVPDWVSAIRTISADEAAKDYNRDFFDNDTIP 315 (651) T ss_pred cceeeeeecccceeeeEEE--cCCCceeEecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCC Confidence 00011 11123456889999999998877778999999999999999999999999999999999 Q ss_pred ceEEeeCCCCCchHHHHHHHHHHHhccccCCceeeccC-----------CceEEeccCCh-hhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 211 PGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDD-----------LEEFTALEIKS-NVAQLLSQTDWTSKQYAKV 278 (392) Q Consensus 211 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~-----------g~~~~~l~~~~-~d~~~~e~~~~~~~~Ia~~ 278 (392) +|++++++....+++..+-+........|+|++++|+. |++|++++.++ +|+||+|++++++++||++ T Consensus 316 ~gil~~~~~~ls~e~~~~lr~~~~~~~~nagk~~vL~~~~~~~~~~~~~g~~~~pls~~~~~D~qfle~r~~~~~eIa~a 395 (651) T protein:vir:99 316 RMVIKVTGGELSEESKRDLRQMLNGLREESHRAVVLEVEKFQSQLDEDVEIELEPMGQGISEEMDFRQFREKNEHEIAKV 395 (651) T ss_pred ceEEEecCCCCCHHHHHHHHHHHHHHhccCCceEEeecccccccccccCCceEEEcCcCchhhHHHHHHHHHHHHHHHHH Confidence 99999976533333222111111123457889998865 99999999987 5999999999999999999 Q ss_pred hcccHHHcCCcccc-cch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------hhccchhhhhhcChHHHHHHHH Q lcl|Aclame:pro 279 YGLPDSYIGGQGDQ-QSS-IQQISGMYASALNRYLRPAISELEYKLSD----------HISVNMRPAIDPLGDNYLSTIS 346 (392) Q Consensus 279 fgVP~~~lg~~~~~-~~~-~~~~~~~~~~~l~p~l~~i~~~l~~~l~~----------~~~~d~~~~~~~~~~~~~~~~~ 346 (392) |||||.+||..+++ +++ +++.+.|++++|.|++..|+++||++|++ +++|+...+++.|.+.+++.+. T Consensus 396 fgVPp~~lG~~~~~~~sn~E~~~~~f~~~tL~P~~~~ie~eln~kLl~~~e~~~~~~i~~ef~~~~llr~D~~~~~e~~~ 475 (651) T protein:vir:99 396 LEVPPVKIGVTDSANRSNSDQQDKDFALEVIQPEQHTFAEWLYQIIHQQALGVTDWTIEYELRGADQPKQEAQLAEQRVR 475 (651) T ss_pred hCCCHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccCceEEEEeccchhhhccHHHHHHHHH Confidence 99999999976543 344 45678999999999999999999999975 2467777889999999999999 Q ss_pred HHHhCCccCHHHHHHHHHhCCCCCccccccc----CC------CCCCCCCCC--CCCC Q lcl|Aclame:pro 347 TATRWGALAENQATFVLQEAGYIPKDLPAPE----NT------NKKTTGQSN--EPVP 392 (392) Q Consensus 347 ~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~~----~~------~~~~~gd~~--~p~p 392 (392) .++++|++|+||+|+++ |++|.+.+..+ +. .+..+|+.+ +..| T Consensus 476 ~~i~~G~~T~NE~R~~l---glppi~~~~gd~~l~~~~~~~~g~~~~gge~~~~~~~~ 530 (651) T protein:vir:99 476 AMRLAGVGLVDEAREEL---GLDPLGEPYGEMTLSEFEAEVAGDVAGGGETEAVHEPP 530 (651) T ss_pred HHHhCCCcCHHHHHHHh---CCCCCCCccccccccccccccccccccCCCCcccccCc Confidence 99999999999999987 44442211111 11 122233221 1222 No 89 >protein:vir:78641 Length: 278 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429941;genbank:gi:156603995;genbank:GeneID:5525387 Probab=100.00 E-value=3.4e-54 Score=313.73 Aligned_cols=259 Identities=15% Similarity=0.183 Sum_probs=218.8 Q ss_pred hhhCceeeecchh-------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCC Q lcl|Aclame:pro 67 LAIVKINAEKKKN-------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEY 139 (392) Q Consensus 67 ia~lp~~~~~~~~-------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~ 139 (392) ||+||++++++.. ..++.+||++||+++||+.++.+++++||||++++|+.+|++++|+|++|+.|++..+.+ T Consensus 1 ia~l~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~ll~~Gna~~~i~r~~~G~~~~l~~l~~~~v~v~~~~~ 80 (278) T protein:vir:78 1 MASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ 80 (278) T ss_pred CccceeEEEecCcccccHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCCEEEEEEECCCCcEEEEEEECCceeEEEEcCC Confidence 9999999987542 345689999999999999999999999999999999999999999999999999999988 Q ss_pred CceEEEEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCC Q lcl|Aclame:pro 140 ENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGG 219 (392) Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~ 219 (392) ++.+++.+...+ +..+.+++++|||++++++.+..+|+||+..+...+..+.+++++....+.+ .|+++++.++. T Consensus 81 ~~~~~y~~~~~~---g~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~i~~~~~~ 155 (278) T protein:vir:78 81 SRELYYSIHAAT---GNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQK--PDSFMLKYGSN 155 (278) T ss_pred CceEEEEEEcCC---ceEEEEccccEEEECCCCCCCCeeeccHHHHHHHHHHHHHHHHHHHHHHhcC--CCcEEEEeCCC Confidence 888877665443 4567899999999999877788899999999999999999999886655554 57899998887 Q ss_pred CCchHHH--HHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc-cch- Q lcl|Aclame:pro 220 GLLSDKD--KASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-QSS- 295 (392) Q Consensus 220 ~~~~~~~--~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-~~~- 295 (392) .++++.+ ++.+.+ ...++|+++++++|++|+++++++.|+|++|.+++++++||++|||||.++|+.+++ +++ T Consensus 156 l~~e~~~~~~~~~~~---~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~~sn~ 232 (278) T protein:vir:78 156 VGKEKRQQVLEDFKQ---YYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKN 232 (278) T ss_pred CCHHHHHHHHHHHHH---HhccCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccH Confidence 6655432 222322 234678999999999999999999999999999999999999999999999976543 344 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------hhccchhhh Q lcl|Aclame:pro 296 IQQISGMYASALNRYLRPAISELEYKLSD--------HISVNMRPA 333 (392) Q Consensus 296 ~~~~~~~~~~~l~p~l~~i~~~l~~~l~~--------~~~~d~~~~ 333 (392) .++.+.|++.+|.|+++.|+++||++|++ +++||.+.+ T Consensus 233 ~~~~~~~~~~~l~P~~~~i~~~ln~~L~~~~e~~~g~~~~f~~~~l 278 (278) T protein:vir:78 233 EELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKIGILNLTLNLI 278 (278) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhcCCceEEEecccC Confidence 45678999999999999999999999974 355665554 No 90 >protein:vir:79150 Length: 368 # NCBI annotation: bacteriophage gpQ # Family: family:all:196 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165254;genbank:gi:145708079;genbank:GeneID:5247161 Probab=100.00 E-value=1.4e-50 Score=293.95 Aligned_cols=335 Identities=8% Similarity=-0.020 Sum_probs=224.9 Q ss_pred chhhhhhccccccccc-----cccccccc--CcchhhhhhhccCCCCcccc-hh------------hhhcchHHHHHHHH Q lcl|Aclame:pro 3 LPILNFINQTNDPPEA-----GSVQSYFP--DGNDAQIMESLLGDNNEWVS-AR------------AALRNSDLFSIILQ 62 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~------------~al~~~~v~~~i~~ 62 (392) |+=. +++.....+ .......+ ......-...+.-+..+.+. .. ...+.|.-+.|+.. T Consensus 1 m~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~p~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~la~ 77 (368) T protein:vir:79 1 MSRN---KTRRAARAASAHVRTANTDAPTEHHTDRAAQAEVFSFGDPVEVLDRRELLDYVECMRMGQWYEPPMPWDGLAR 77 (368) T ss_pred CCcc---ccccchhccCcccccccccCcchhhccccCceEEEEcCCceeecchhhHHHHHHHHhccchhccCcCHHHHHH Confidence 4421 111110000 00000000 00000000001000111111 10 11222333344333 Q ss_pred HHHhhhhCc-eeeecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCc Q lcl|Aclame:pro 63 LSSDLAIVK-INAEKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYEN 141 (392) Q Consensus 63 ia~~ia~lp-~~~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~ 141 (392) +.+.-+.-. ....++....++.+||+.||+++|++ ++.+++++||||++++|+..|++++|+|+++..|++..+. + T Consensus 78 ~~~~~~~h~~~~~~~~n~l~l~~~Pn~~~t~~~f~~-l~~d~ll~Gnay~~~~r~~~G~~~~L~~l~~~~v~~~~~~--~ 154 (368) T protein:vir:79 78 SFRAAAHHSSAVYVKRNILVSTFIPHPLLSRATFER-LVLDWQVFGNAYLERRENVLGGTIRLDTPLAKYVRRGLDL--N 154 (368) T ss_pred HHhhccccchhhhhhcchhhhhcCCCcCCCHHHHHH-HHHHHhhcCCeEEEEEEcCCCCEEEEEEeCcccceeeccC--C Confidence 332221110 01123444456779999999999976 6789999999999999999999999999999999876543 3 Q ss_pred eEEEEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCC-C Q lcl|Aclame:pro 142 GMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGG-G 220 (392) Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~-~ 220 (392) .++ +.. . .+..+.+++++|||+|.+++.+..+|+||+..+..++.+..++..+..++|+||++|++|+.+++. . T Consensus 155 ~~~-~~~-~---~~~~~~~~~~dIihir~~~~~~~~yGlsp~~~a~~si~l~~aa~~~~~~~~~NGa~~~gil~~~~~~l 229 (368) T protein:vir:79 155 TYF-FVQ-N---WQQPYTFAAGSVFHLQEPDINQEVYGLPEYLSALNATWLNESATLFRRRYYKNGSHAGFILYMTDAAQ 229 (368) T ss_pred EEE-EEe-c---CCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCC Confidence 322 221 1 245688999999999998888888999999999999999999999999999999999999988753 3 Q ss_pred CchH-HHHHHHHHHHhccccCCceeec-----cCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccccc- Q lcl|Aclame:pro 221 LLSD-KDKASRSRSFMKRSRSGGPVVL-----DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ- 293 (392) Q Consensus 221 ~~~~-~~~~~~~~~~~~~~~~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~- 293 (392) ++++ +..++..+.+.|.+|.|+++++ ++|++|++++.+++|+||+|.+++++++||++|||||.++|+..+++ T Consensus 230 ~~e~~~~lk~~~~~~~G~~N~g~~~vl~~~g~~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~ 309 (368) T protein:vir:79 230 KQEDVDTLREAMKSAKGPGNFRNLFMYAPNGKKDGIQLLPVSEVAAKDEFWNIKNVTRDDQLAAHRVPPQLMGIIPNNTG 309 (368) T ss_pred CHHHHHHHHHHHHHhcCCcccCceeEecCCCCccceeEEEcCCCHHHHHHHHHHHHhHHHHHHHhCCCHHHccccCCCCC Confidence 4333 2223334457889999999998 68999999999999999999999999999999999999999754432 Q ss_pred --ch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhccchhhhhhcChHHHHHHHHHHHhCC Q lcl|Aclame:pro 294 --SS-IQQISGMYASALNRYLRPAISELEYKLSD-HISVNMRPAIDPLGDNYLSTISTATRWG 352 (392) Q Consensus 294 --~~-~~~~~~~~~~~l~p~l~~i~~~l~~~l~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~g 352 (392) ++ +++.+.|++++|.|+++.|+ +++.+|.. .++|+...+++.|.+.++..... +. T Consensus 310 ~~sn~e~~~~~f~~~~l~Pl~~~ie-~ln~~l~~e~~rF~~~~l~~~D~~a~a~~~~r---sa 368 (368) T protein:vir:79 310 GFGDVEKAAMVFARNEVKPLQDRLL-AINDWIGDEVVRFAPYALGGHDQPAAAPGGQR---SA 368 (368) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHH-HHHhccCcceeeechhHhhcccccccCCcccc---cC Confidence 33 45678999999999999997 68888865 45788777777766554431111 10 No 91 >protein:vir:79207 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111036;genbank:gi:134288763;genbank:GeneID:4960726 Probab=100.00 E-value=2e-49 Score=287.51 Aligned_cols=311 Identities=12% Similarity=0.056 Sum_probs=221.4 Q ss_pred chhhhhhccccc--ccc---------------cccccccccCcchhhh---hhhccCCCCcc----cchhhhh----cch Q lcl|Aclame:pro 3 LPILNFINQTND--PPE---------------AGSVQSYFPDGNDAQI---MESLLGDNNEW----VSARAAL----RNS 54 (392) Q Consensus 3 Mg~~n~~~~~~~--~~~---------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~al----~~~ 54 (392) |. .=+++.. ... ..+.+.+.+....+.+ .+-+ .++.+ ++..... .++ T Consensus 1 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~--~~~~~~~pp~~~~~la~~~~~~~ 75 (351) T protein:vir:79 1 MS---KRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECW--SNGEWFEPPVSFAGLAKSFRAST 75 (351) T ss_pred CC---CCCCCCCCCCCCCCchhhhhcccceeEEEEcCCceeecCcchhhhhhhhh--hcCceecCCCCHHHHHHHHhhhH Confidence 32 1111000 000 0111111111111111 1111 11111 2221111 123 Q ss_pred HHHHHHHHHHHhhhhCceeeecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEecccccee Q lcl|Aclame:pro 55 DLFSIILQLSSDLAIVKINAEKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNT 134 (392) Q Consensus 55 ~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~ 134 (392) ...+||...++.+++ ..+||+.||+++|++ ++.+++++||||++++|+..|++++|+|++|.+|++ T Consensus 76 ~h~~~l~~k~n~l~~-------------~~~Pnp~~t~~~f~~-~v~d~ll~Gnay~~~~r~~~G~~~~L~~l~~~~v~~ 141 (351) T protein:vir:79 76 HHSSALFFKANVLAS-------------TFRPHRWLSRHAFER-WALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRR 141 (351) T ss_pred hhhhhhhhhhhHHhh-------------cccCCCCCCHHHHHH-HHHHHHhcCCeEEEEEECCCCCEEEEEEeCCcceee Confidence 334444443333332 457999999999975 667999999999999999999999999999999998 Q ss_pred eecCCCceEEEEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEE Q lcl|Aclame:pro 135 YYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVL 214 (392) Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~ 214 (392) ..+.++ ++. .. ..+..+.+++++|||++.+++.+..+|+|++..+..++....+++.+..++|+||++|++|+ T Consensus 142 ~~~~~~---~~~-~~---~~g~~~~~~~~eIihir~~~~~~~~yGl~~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~il 214 (351) T protein:vir:79 142 KADFSG---FVY-VN---GWQERHEFEPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFIL 214 (351) T ss_pred eecCCe---EEE-Ee---cCceEEEEcCccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEE Confidence 776543 222 21 13456789999999999998888899999999999999999999999999999999999999 Q ss_pred eeCCC-CCchH-HHHHHHHHHHhccccCCceeec-----cCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcC Q lcl|Aclame:pro 215 TVKGG-GLLSD-KDKASRSRSFMKRSRSGGPVVL-----DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIG 287 (392) Q Consensus 215 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg 287 (392) .+++. .++++ +..++..+...|.+|.++++++ ++|++|++++.+++|+||+|++++++++||++|||||.++| T Consensus 215 ~~~~~~ls~e~~~~lk~~~~~~~G~~N~~~~~v~~~~g~~~gi~~~pl~~~~~d~ef~e~k~~s~~eI~~a~~VPp~llG 294 (351) T protein:vir:79 215 YMTDAAQKQDDVDNMRDALKNAKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLG 294 (351) T ss_pred EecCCCCCHHHHHHHHHHHHHhcCccccCceeEecCCCCccceEEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhc Confidence 98653 33333 2223334557888999999988 58999999999999999999999999999999999999999 Q ss_pred Cccccc---c-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hccchhhhhhcChHH Q lcl|Aclame:pro 288 GQGDQQ---S-SIQQISGMYASALNRYLRPAISELEYKLSDH-ISVNMRPAIDPLGDN 340 (392) Q Consensus 288 ~~~~~~---~-~~~~~~~~~~~~l~p~l~~i~~~l~~~l~~~-~~~d~~~~~~~~~~~ 340 (392) +..+++ + .+++.+.|++++|.|+++.|++ ++.+|..+ ++|+...+++.|.+. T Consensus 295 i~~~~t~~~~n~e~~~~~f~~~~l~Pl~~~ie~-ln~~lg~~~~~F~~~~llr~d~~a 351 (351) T protein:vir:79 295 IVPSNSGGFGTPDTAARVFGRNEIRPLQARFAE-LNDWLGDEVVTFDDYEIPPAPVAA 351 (351) T ss_pred ccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH-HHhhcCcceeeeChhhhccccccC Confidence 754332 3 3466889999999999999975 78888655 588887777777665 No 92 >protein:vir:103971 Length: 376 # NCBI annotation: pbsx family phage portal protein # Family: family:all:196 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293752;genbank:gi:72537722;genbank:GeneID:3608098 Probab=100.00 E-value=3.2e-49 Score=286.42 Aligned_cols=316 Identities=12% Similarity=0.024 Sum_probs=226.4 Q ss_pred Ccchhhhhhcccccc--------------cccccccccccCcchhhh---hhhccCCCCc----ccchhhhh----cchH Q lcl|Aclame:pro 1 MILPILNFINQTNDP--------------PEAGSVQSYFPDGNDAQI---MESLLGDNNE----WVSARAAL----RNSD 55 (392) Q Consensus 1 m~Mg~~n~~~~~~~~--------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~~~~al----~~~~ 55 (392) .+|.=-...++.... ....+.+.+.+....+.+ .+-+. ++. .++..... .++. T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fg~p~~v~~~~~~~~~~~~~~--~~~~~~pp~~~~~La~~~~~~~~ 101 (376) T protein:vir:10 24 LRMSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWS--NGEWFEPPVSFAGLAKSFRASTH 101 (376) T ss_pred ccchhccCCCcccchhhhhHhhhccCcceeEEEEcCCceeccCcchhhhhhhhhh--cCceecCCCCHHHHHHHHhhhHH Confidence 445422111111000 001111222222221111 11111 111 22322211 1344 Q ss_pred HHHHHHHHHHhhhhCceeeecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceee Q lcl|Aclame:pro 56 LFSIILQLSSDLAIVKINAEKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTY 135 (392) Q Consensus 56 v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~ 135 (392) ..+||.+.++.+++ ..+||++||+++|++. +.+++++||+|++++|+..|++++|+|++|.+|++. T Consensus 102 h~s~l~~k~n~l~~-------------~~~Pnp~lT~~~f~~~-v~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~ 167 (376) T protein:vir:10 102 HSSALFFKANVLAS-------------TFRPHRWLSRHAFERW-ALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRK 167 (376) T ss_pred hhhhHHHHhHHHHh-------------ccCCCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCCEEEEEEeCCcceEEE Confidence 45566555554433 3579999999999865 568999999999999999999999999999999998 Q ss_pred ecCCCceEEEEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEe Q lcl|Aclame:pro 136 YFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLT 215 (392) Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~ 215 (392) .+.++ ++ + ... .+..+.+++++|||++.+++.+..+|+|++.++..++....++++|..++|+||++|++|+. T Consensus 168 ~d~~~--~~-~-~~~---~~~~~~~~~~eViHir~~~~~~~~yGls~~~~a~~si~l~~aa~~f~~~~f~NGa~pggIl~ 240 (376) T protein:vir:10 168 ADFNG--FV-Y-VNG---WQERHEFEPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILY 240 (376) T ss_pred eeCCe--EE-E-EEc---CCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEE Confidence 76542 21 1 111 24567899999999999988888899999999999999999999999999999999999999 Q ss_pred eCC-CCCchH-HHHHHHHHHHhccccCCceeec-----cCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCC Q lcl|Aclame:pro 216 VKG-GGLLSD-KDKASRSRSFMKRSRSGGPVVL-----DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGG 288 (392) Q Consensus 216 ~~~-~~~~~~-~~~~~~~~~~~~~~~~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~ 288 (392) +++ ..++++ +..++..+...|.+|.++++++ ++|++|++++.+++|+||+|.+++++++||++|||||.++|. T Consensus 241 ~~d~~l~~e~~~~lr~~~~~~~G~~N~~~~~vl~~~g~~~Gi~~~pls~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi 320 (376) T protein:vir:10 241 MTDAAQKQDDVDNMRDALKNAKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGI 320 (376) T ss_pred ecCCCCCHHHHHHHHHHHHHhcCccccCceeEecCCCCccceEEEEccCCHHHHHHHHHHHHhHHHHHHHhCCCHHHhcc Confidence 865 334333 2223334457888999999988 579999999999999999999999999999999999999997 Q ss_pred cccc---cch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhccchhhhhhcChHH Q lcl|Aclame:pro 289 QGDQ---QSS-IQQISGMYASALNRYLRPAISELEYKLSD-HISVNMRPAIDPLGDN 340 (392) Q Consensus 289 ~~~~---~~~-~~~~~~~~~~~l~p~l~~i~~~l~~~l~~-~~~~d~~~~~~~~~~~ 340 (392) .+++ .++ +++.+.|++++|.|+++.|+ +++.+|.. .++|+...+++.|.+. T Consensus 321 ~~~~t~~~sn~eq~~~~f~~~~L~Pl~~~ie-eln~~L~~~~~~F~~~~Llr~d~ka 376 (376) T protein:vir:10 321 VPSNSGGFGTPDTAARVFGRNEIRPLQARFA-ELNDWLGEEVVRFDDYEIPPAPVAA 376 (376) T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHH-HHHhhccccccccChhHhhcccccC Confidence 5443 233 45678999999999999998 47778864 4788888888877666 No 93 >protein:vir:98567 Length: 340 # NCBI annotation: gp1 # Family: family:all:196 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958056;genbank:gi:41057353;genbank:GeneID:2744238 Probab=100.00 E-value=3.2e-49 Score=286.43 Aligned_cols=310 Identities=12% Similarity=0.051 Sum_probs=219.9 Q ss_pred chhhhhhccccc-c------cccccccccccCcchhhhh---hhccCCCCc----ccchhhhhc----chHHHHHHHHHH Q lcl|Aclame:pro 3 LPILNFINQTND-P------PEAGSVQSYFPDGNDAQIM---ESLLGDNNE----WVSARAALR----NSDLFSIILQLS 64 (392) Q Consensus 3 Mg~~n~~~~~~~-~------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~al~----~~~v~~~i~~ia 64 (392) |+ .+.=++... . ....+.+.+.+.+..+.+. +.+. ++. .++.....+ ++...+||...+ T Consensus 1 m~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~pp~~~~~la~l~~a~~~h~s~i~~k~ 77 (340) T protein:vir:98 1 MS-KRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECIS--NGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKR 77 (340) T ss_pred CC-CCCCCccccccccCccceeEEEcCCceeecCcchhhhhhhhhh--cCceecCCCCHHHHHHHHHhccccchhhhhhh Confidence 44 111000000 0 0111122222222111111 1110 111 122111111 222344444444 Q ss_pred HhhhhCceeeecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEE Q lcl|Aclame:pro 65 SDLAIVKINAEKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMY 144 (392) Q Consensus 65 ~~ia~lp~~~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~ 144 (392) +.+++ .-+||++||+++|++ ++.+++++||+|++++|+..|++++|+|+++.+|++..+. + .+ T Consensus 78 n~l~~-------------~~~Pn~~lt~~~f~~-~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~~~--~-~~ 140 (340) T protein:vir:98 78 NVLAS-------------TYIPHPLLSRQDFSR-FALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD--S-VF 140 (340) T ss_pred hHHhh-------------ccCCCCCCCHHHHHH-HHHHHHhcCCeEEEEEECCCCcEEEEEEeCCceEEEcccC--c-EE Confidence 44432 348999999999975 5578999999999999999999999999999999886543 2 33 Q ss_pred EEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCC-CCch Q lcl|Aclame:pro 145 YNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGG-GLLS 223 (392) Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~-~~~~ 223 (392) +.+.. .+..+.+++++|+|++.+++.+..+|+|++..+..++....+++++..++|+||++|++|+.+++. .+++ T Consensus 141 ~~~~~----~~~~~~~~~~eViHir~~~~~~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~NGa~pg~il~~~~~~ls~e 216 (340) T protein:vir:98 141 WFVEN----FTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSAT 216 (340) T ss_pred EEEec----CCeEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHH Confidence 33332 345678999999999998887788999999999999999999999999999999999999998753 4433 Q ss_pred HH-HHHHHHHHHhccccCCceeec-----cCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccccc---c Q lcl|Aclame:pro 224 DK-DKASRSRSFMKRSRSGGPVVL-----DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ---S 294 (392) Q Consensus 224 ~~-~~~~~~~~~~~~~~~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~---~ 294 (392) +. ..++..+...|.+|.++++++ ++|++|++++.+++|+||+|++++++++||++|||||.++|..++++ + T Consensus 217 ~~~~lk~~~~~~~G~~n~~~~~vl~~~g~~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~s 296 (340) T protein:vir:98 217 DVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLG 296 (340) T ss_pred HHHHHHHHHHHhcCccccCceeEecCCCCccceEEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhcccCCCCCccc Confidence 32 223334456788999999998 67999999999999999999999999999999999999999754332 3 Q ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hccchhhhhhcC Q lcl|Aclame:pro 295 S-IQQISGMYASALNRYLRPAISELEYKLSDH-ISVNMRPAIDPL 337 (392) Q Consensus 295 ~-~~~~~~~~~~~l~p~l~~i~~~l~~~l~~~-~~~d~~~~~~~~ 337 (392) + +++.+.|++++|.|+++.|++ +|.+|..+ ++|+...+++.| T Consensus 297 n~e~~~~~f~~~~l~Pl~~~iee-~n~~L~~e~~rF~~~~l~~~d 340 (340) T protein:vir:98 297 DVEKVAKVFVRNELSPLQDRFRE-VNDWLGMEVIRFKEYTLDNPE 340 (340) T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HHhcccccccccCccccccCC Confidence 3 567889999999999999985 88888765 688887788777 No 94 >protein:vir:4698 Length: 251 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061630;genbank:gi:9635717;genbank:GeneID:1262980 Probab=100.00 E-value=4.3e-50 Score=291.21 Aligned_cols=240 Identities=18% Similarity=0.211 Sum_probs=194.0 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh--- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) ||||+.+.++.......... .....+..+.+..+..|+.++||++|+|++||++||++||+||++++++.. T Consensus 1 MglF~~~~~r~~~~~~~~~~------~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~iA~lp~~~~~~~~~~~ 74 (251) T protein:vir:46 1 MGIFYKNEKRDLQYNEDDLQ------MMVQTLPSFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNGQINY 74 (251) T ss_pred CCccccccccccCCCccchh------hhhhhhccccCcCcceechhhhhccHHHHHHHHHHHHhHhhCceEEeeCccccc Confidence 99986554432222111111 111222334455667799999999999999999999999999999987532 Q ss_pred -----hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCcc Q lcl|Aclame:pro 80 -----QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKI 154 (392) Q Consensus 80 -----~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~ 154 (392) ..++.+||++||+++||+.++.+++++||||++++|+.+|++++|+|++|++|++..+.++...++++....... T Consensus 75 ~~~~~~ll~~~Pn~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~~~~~ 154 (251) T protein:vir:46 75 SDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRIDSNGN 154 (251) T ss_pred cchHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCceEEEEECCCCcEEEEEEEeccCCc Confidence 345689999999999999999999999999999999999999999999999999999887776666666665566 Q ss_pred eeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH---HHHHHHH Q lcl|Aclame:pro 155 EPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD---KDKASRS 231 (392) Q Consensus 155 ~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~---~~~~~~~ 231 (392) +..+.+++++|||+|+++.++ .+|+||+..++.+|..+.++++++.++|+||++|+|++++++....++ +.++.+. T Consensus 155 g~~~~~~~~diiH~r~~~~dg-~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~~e~~~~~~~~~~ 233 (251) T protein:vir:46 155 NIERNVKFEDMLDIKFYSLDG-INGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFP 233 (251) T ss_pred ceeEEECCccEEEecCcCCCC-eeecCHHHHHHHHHHHHHHHHHHHHHHHHccCCCcEEEEeCCCCCCHHHHHHHHHHHH Confidence 777899999999999987765 689999999999999999999999999999999999999998764443 3356778 Q ss_pred HHHhccccCCceeeccCCceE Q lcl|Aclame:pro 232 RSFMKRSRSGGPVVLDDLEEF 252 (392) Q Consensus 232 ~~~~~~~~~g~~~vl~~g~~~ 252 (392) +.+.|.+|+|++++ ||+= T Consensus 234 ~~~~g~~n~g~~~~---gm~~ 251 (251) T protein:vir:46 234 KVLVELNKLGKLSY---SMNQ 251 (251) T ss_pred HHhcCccccccccc---ccCC Confidence 88899999998765 3321 No 95 >protein:vir:100328 Length: 346 # NCBI annotation: capsid portal protein Q # Family: family:all:196 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655469;genbank:gi:109289937;genbank:GeneID:4157371 Probab=100.00 E-value=1.8e-49 Score=287.84 Aligned_cols=319 Identities=10% Similarity=0.037 Sum_probs=221.5 Q ss_pred chhhhhhccccccc--c--------cccccccccCcchhhh---hhhccCCCCcccchhhhhcchHHHHHHHHHHHhhh- Q lcl|Aclame:pro 3 LPILNFINQTNDPP--E--------AGSVQSYFPDGNDAQI---MESLLGDNNEWVSARAALRNSDLFSIILQLSSDLA- 68 (392) Q Consensus 3 Mg~~n~~~~~~~~~--~--------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia- 68 (392) |+ ..+++..+. + ..+.+.+.+.+....+ ++.+ ...+..+++ |.-+..+..+.++-+ T Consensus 1 m~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~p------p~~~~~la~l~~~~~~ 70 (346) T protein:vir:10 1 MK---KQLRKNLTQNDRLQPQAQTEIFSFGDPIPVLDRADILNYLECS-AMYEKWYNP------PMSFDGLAKSLRSSTH 70 (346) T ss_pred CC---cccCCCCCcccccccccCeEEEecCCcceecCchhHHHHHHHh-hcCCceEec------CCCHHHHHHHHHhhhh Confidence 33 222111111 0 0111111111111111 1111 111111110 111111111111111 Q ss_pred -hCceeeecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEE Q lcl|Aclame:pro 69 -IVKINAEKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNI 147 (392) Q Consensus 69 -~lp~~~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~ 147 (392) +-.+...++....++.+||++||+++|++ ++.+++++||||++++|+..|++++|+|+++.+|++..+.++ .++.. T Consensus 71 h~~~i~~k~n~l~~l~~~Pn~~~t~~~f~~-~~~d~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~--~~~~~ 147 (346) T protein:vir:10 71 HESAIITKANILLSTCEVDSRYLSRRDLSS-FVKDYLVFGNAYFEVVRNRLGQVQRIESPLAKYVRKGLEAGQ--FYYVP 147 (346) T ss_pred cchhhhhhhhhHHHHHhCCCCCCCHHHHHH-HHHHHHhcCCeEEEEEEcCCCcEEEEEEecCCceEEEEcCCe--EEEEE Confidence 22223333444456789999999999987 567899999999999999999999999999999998766543 22222 Q ss_pred EecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCC-CCchH-H Q lcl|Aclame:pro 148 TFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGG-GLLSD-K 225 (392) Q Consensus 148 ~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~-~~~~~-~ 225 (392) .. ..+..+.+++++|||+|.+++.+..+|+|++..+..++....+++.+..++|+||++|++|+.+++. .++++ + T Consensus 148 ~~---~~g~~~~~~~~dIih~r~~~~~~~~~G~~~~~~a~~si~l~~~a~~~~~~~~~NG~~~~~il~~~d~~l~~e~~~ 224 (346) T protein:vir:10 148 QR---FDHQEHEFAKGSIYHLLEPDINQDIYGLPQYLSALQSAWLNESATLFRRKYFLNGAHAGFVFYMSDASQKQEDVE 224 (346) T ss_pred Ec---cCCeEEEEecccEEEecCCCCCCCeeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCHHHHH Confidence 22 2346688999999999999887788999999999999999999999999999999999999998653 33333 2 Q ss_pred HHHHHHHHHhccccCCceeecc-----CCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc---cch-H Q lcl|Aclame:pro 226 DKASRSRSFMKRSRSGGPVVLD-----DLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ---QSS-I 296 (392) Q Consensus 226 ~~~~~~~~~~~~~~~g~~~vl~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~---~~~-~ 296 (392) ..++..+...|.+|.|+++++. +|+++++++.++.|+||+|.+++++++||++|||||.++|...++ .++ + T Consensus 225 ~i~~~~~~~~g~~n~~~~~vl~~~~~~~gi~~~pis~~~~d~qf~e~k~~~~~~I~~af~VPp~llG~~~~~~~~~s~~e 304 (346) T protein:vir:10 225 NIRQQLKQSKGVGNFKNLFVHAPNGKKDGIQIIPIADVSAKDEFFNIKNVSRDDVLAAHRVPPQLMGIIPNNTGGFGNVA 304 (346) T ss_pred HHHHHHHHhcCccccCceeEecCCCCccceeEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHH Confidence 2233344567888999999984 478999999999999999999999999999999999999975433 233 4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hccchhhhhhcCh Q lcl|Aclame:pro 297 QQISGMYASALNRYLRPAISELEYKLSDH-ISVNMRPAIDPLG 338 (392) Q Consensus 297 ~~~~~~~~~~l~p~l~~i~~~l~~~l~~~-~~~d~~~~~~~~~ 338 (392) ++.+.|++++|.|+++.|++ ++.+|..+ ++|+...+++.+. T Consensus 305 ~~~~~f~~~~l~P~~~~iee-~n~~L~~e~i~F~~~~ll~~~~ 346 (346) T protein:vir:10 305 DAAEVFFITEIEPLQERLKE-FNQWLGQEVIKFKPSKLLQRTQ 346 (346) T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhcccceeeechhhhcccCC Confidence 56789999999999999985 66677654 6888888888776 No 96 >protein:vir:78191 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111155;genbank:gi:134288732;genbank:GeneID:4960651 Probab=100.00 E-value=1e-48 Score=283.69 Aligned_cols=311 Identities=12% Similarity=0.052 Sum_probs=221.0 Q ss_pred chhhhhhccccc--ccc---------------cccccccccCcchhhh---hhhccCCCCcc----cchhhhh----cch Q lcl|Aclame:pro 3 LPILNFINQTND--PPE---------------AGSVQSYFPDGNDAQI---MESLLGDNNEW----VSARAAL----RNS 54 (392) Q Consensus 3 Mg~~n~~~~~~~--~~~---------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~al----~~~ 54 (392) |. .=+++.. ... ..+.+.+.+....+.+ .+-+ .++.+ ++..... .++ T Consensus 1 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~--~~~~~~~pp~~~~~la~~~~~~~ 75 (351) T protein:vir:78 1 MS---KRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECW--SNGEWFEPPVSFAGLAKSFRAST 75 (351) T ss_pred CC---CCCCCCCCCCCCCCchhhhhcccceeEEEEcCCceeecCcchhhhhhhhh--ccCceecCCCCHHHHHHHHhhhH Confidence 32 1111000 000 0111111111111111 1111 11111 2222111 123 Q ss_pred HHHHHHHHHHHhhhhCceeeecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEecccccee Q lcl|Aclame:pro 55 DLFSIILQLSSDLAIVKINAEKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNT 134 (392) Q Consensus 55 ~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~ 134 (392) ...+||..-++.+++ ..+||+.||+++|++ ++.+++++||+|++++|+..|++++|+|+++.+|++ T Consensus 76 ~h~~~l~~k~n~l~~-------------~~~Pn~~~t~~~f~~-~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~v~~ 141 (351) T protein:vir:78 76 HHSSALFFKANVLAS-------------TFRPHRWLSRHAFER-WALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRR 141 (351) T ss_pred hhhhhhhhhhhHHhh-------------cccCCCCCCHHHHHH-HHHHHHhcCCeEEEEEECCCCCEEEEEEecCcceEE Confidence 334444444443332 357999999999975 556899999999999999999999999999999998 Q ss_pred eecCCCceEEEEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEE Q lcl|Aclame:pro 135 YYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVL 214 (392) Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~ 214 (392) ..+.++ .+ +... .+..+.+++++|||++.+++.+..+|+|++..+..++....++..+..++|+||++|++|+ T Consensus 142 ~~~~~~--~~--~~~~---~~~~~~~~~~eVihir~~~~~~~~yGl~~~~~a~~si~l~~~a~~~~~~~f~NGa~pggIl 214 (351) T protein:vir:78 142 KADFSG--FV--YVNG---WQERHEFAPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFIL 214 (351) T ss_pred eeeCCe--EE--EEec---CCeEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEE Confidence 876543 11 1211 2456889999999999998888899999999999999999999999999999999999999 Q ss_pred eeCCC-CCchH-HHHHHHHHHHhccccCCceeec-----cCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcC Q lcl|Aclame:pro 215 TVKGG-GLLSD-KDKASRSRSFMKRSRSGGPVVL-----DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIG 287 (392) Q Consensus 215 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg 287 (392) .+++. .++++ +..++..+...|.+|.|+++++ ++|+++++++.+++|+||+|.+++++++||++|||||.++| T Consensus 215 ~~~~~~ls~e~~~~lr~~~~~~~G~~N~~~~~v~~~~g~~~g~k~~pls~~~~d~qf~e~k~~~~~eIa~a~~VPp~llG 294 (351) T protein:vir:78 215 YMTDAAQKQDDVDNMRDALKNAKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLG 294 (351) T ss_pred EecCCCCCHHHHHHHHHHHHHhcCcccccceeeecCCCCccceeEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhc Confidence 98653 34333 2223334557889999999988 57899999999999999999999999999999999999999 Q ss_pred Cccccc---ch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhccchhhhhhcChHH Q lcl|Aclame:pro 288 GQGDQQ---SS-IQQISGMYASALNRYLRPAISELEYKLSD-HISVNMRPAIDPLGDN 340 (392) Q Consensus 288 ~~~~~~---~~-~~~~~~~~~~~l~p~l~~i~~~l~~~l~~-~~~~d~~~~~~~~~~~ 340 (392) ...+++ ++ +++.+.|++++|.|+++.|++ ++.+|.. .++|+...+++.|.+. T Consensus 295 i~~~~t~~~sn~e~~~~~f~~~~l~P~~~~iee-~n~~l~~~~~~F~~~~Llr~d~ka 351 (351) T protein:vir:78 295 IVPSNSGGFGTPDTAARVFGRNEIRPLQARFAE-LNDWLGDEVVRFDDYEIPPAPVAA 351 (351) T ss_pred ccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH-HHhhcCccceecChhhhccccccC Confidence 754332 33 456789999999999999985 6667754 4788888888877666 No 97 >protein:vir:267 Length: 348 # NCBI annotation: putative capsid portal protein # Family: family:all:196 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536647;genbank:gi:17975125;genbank:GeneID:929081 Probab=100.00 E-value=1e-48 Score=283.64 Aligned_cols=320 Identities=9% Similarity=-0.016 Sum_probs=213.7 Q ss_pred Ccchhhhhhcc-ccccccccccc-ccccCcchhhh---hhhccCCCCcc----cchhhhh----cchHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MILPILNFINQ-TNDPPEAGSVQ-SYFPDGNDAQI---MESLLGDNNEW----VSARAAL----RNSDLFSIILQLSSDL 67 (392) Q Consensus 1 m~Mg~~n~~~~-~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~----~~~~~al----~~~~v~~~i~~ia~~i 67 (392) |-=..-+.-.. .....++.+.+ .+.+.+..+.+ ++-+....+.. ++..... .++...+||....+.+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~epp~~~~~La~l~~~n~~h~~~i~~k~N~l 80 (348) T protein:vir:26 1 MTEQLIHSHTTDGTESKSVYSFDPNPEPVDTNSWMTRYCELFYNDFDDYWEPPISLKGLAEIANANGYHGSLLKARANYV 80 (348) T ss_pred CCccccchhhccccCCceEEEecCCCeeecCcchHHHHHHHHhcCCCccccCCCCHHHHHHHHhhhhhhhhhHhhhhhHH Confidence 11111000000 00011111122 12222111111 11111111111 1111100 1233334443333333 Q ss_pred hhCceeeecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEE Q lcl|Aclame:pro 68 AIVKINAEKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNI 147 (392) Q Consensus 68 a~lp~~~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~ 147 (392) ++ .-+||++||+++|++. +.+++++||||++++|+..|++++|+|+++.+|++..+.+ ++.+ T Consensus 81 ~~-------------~~~Pn~~~t~~~f~~~-~~d~ll~Gnay~~~~rn~~G~~~~L~~l~~~~v~~~~d~~----~~~~ 142 (348) T protein:vir:26 81 AG-------------RFMNGGGLPMYKMNSA-CWDYFGLGMSAFVKIRSYLKNVIALEPLPMVHMRKRKNGD----FVQL 142 (348) T ss_pred hh-------------cccCCCCCCHHHHHHH-HHHHHhcCCeEEEEEEcCCCcEEEEEEecCceeEeeecCc----EEEE Confidence 22 3479999999999775 5689999999999999999999999999999998875532 2222 Q ss_pred EecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCC-CCchHHH Q lcl|Aclame:pro 148 TFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGG-GLLSDKD 226 (392) Q Consensus 148 ~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~-~~~~~~~ 226 (392) .. .+..+.|++++|||++.+++.+..+|+|++..+..++....++..+..++|+||++|++|+.+++. .++++++ T Consensus 143 ~~----~g~~~~f~~~dIiHir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~Il~~~~~~ls~e~~~ 218 (348) T protein:vir:26 143 LR----NNEQKVFKAKDVIFIPQYDPQQQIYGLPDYLGSIQSSLLNRDATLFRRRYYLNGAHMGFIFYATDPNLSEADEK 218 (348) T ss_pred Ee----cCeEEEEcCccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHH Confidence 22 245678999999999998888888999999999999999999999999999999999999987653 4433322 Q ss_pred -HHHHHHHHhccccCCceeec-----cCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc---cch-H Q lcl|Aclame:pro 227 -KASRSRSFMKRSRSGGPVVL-----DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ---QSS-I 296 (392) Q Consensus 227 -~~~~~~~~~~~~~~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~---~~~-~ 296 (392) .++..+...|.+|.++++++ ++|+++++++.+++|+||+|.+++++++||++|||||.++|+..++ .++ + T Consensus 219 ~lk~~~~~~~G~~n~~~~~vl~~~g~~~Gi~~~pis~~~~d~qf~e~k~~t~~dIa~af~VPp~llGi~~~~~~~~sn~e 298 (348) T protein:vir:26 219 ALKEKIASSKGIGNFRSMFVNIPNGKEKGIQLIPVGDIATKDEFERIKNITAQDIFVGHRFPAGMGGMLPQQGANVPDPL 298 (348) T ss_pred HHHHHHHHhcCcccccceeEEcCCCCccceeEEEccCChhHHHHHHHHHhhHHHHHHHhCCCHHHccccCCCCCccccHH Confidence 22333445788899999998 7899999999999999999999999999999999999999964332 233 4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhccchhhhhhcChHHHHHHH Q lcl|Aclame:pro 297 QQISGMYASALNRYLRPAISELEYKLSD----HISVNMRPAIDPLGDNYLSTI 345 (392) Q Consensus 297 ~~~~~~~~~~l~p~l~~i~~~l~~~l~~----~~~~d~~~~~~~~~~~~~~~~ 345 (392) ++.+.|++++|.|+++.|+++||.+|.. .+.||++...+. .+ +..+ T Consensus 299 ~~~~~f~~~~l~P~~~~ie~~ln~~l~~~~~~~~~fdl~~~~e~--~~-~~a~ 348 (348) T protein:vir:26 299 KVSQVYDFYEVIPVCKRFMDAVNNDPEIPDNLKLKFNLNPGVES--AN-GSAV 348 (348) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhCCCCccEEEEecCccccc--ch-hhcC Confidence 6678999999999999999999998852 234444322211 11 1111 No 98 >protein:vir:3780 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536820;genbank:gi:17981829;genbank:GeneID:929208 Probab=100.00 E-value=8e-48 Score=278.79 Aligned_cols=319 Identities=8% Similarity=-0.045 Sum_probs=212.3 Q ss_pred chhhhhhccccccc---------ccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHH--HHhhhhCc Q lcl|Aclame:pro 3 LPILNFINQTNDPP---------EAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQL--SSDLAIVK 71 (392) Q Consensus 3 Mg~~n~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~i--a~~ia~lp 71 (392) |+-. +++.... .+.+...+.+... -.-.+-+...++.++. -|.-+.++-.+ |+.-.+-. T Consensus 1 ~~~~---~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~y~~~~~~~~~~~~e------pp~~~~~la~l~~~~~~h~~~ 70 (345) T protein:vir:37 1 MKTN---VKTDNKKGIVIAPINDRTFSLNEISASPA-LDYVGIGFDENYNCYL------PPVNRHALAKLPHQNAQHGGI 70 (345) T ss_pred CCCC---ccccchhhcccCcceeEEeecCCcccccc-hhhhhhhhcCCccccC------CCCCHHHHHHHhhcccccccc Confidence 3321 1111100 0011111111100 0000111111111111 11111121111 11111112 Q ss_pred eeeecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecC Q lcl|Aclame:pro 72 INAEKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDD 151 (392) Q Consensus 72 ~~~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~ 151 (392) +.. ++......-+||+.||+++|++. +.+++++||||++++|+..|++++|+|+++..|++..+.+.. +....... T Consensus 71 i~~-k~n~l~~~~~Pn~~lt~~~f~~~-~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~d~~~~--~~~~~~~~ 146 (345) T protein:vir:37 71 LHS-RANMVSSLYEGGKALSRMDMRAL-CLNLIQFGDVGLLKVRNGFGQVVRLVPLSSLYLRVRKDGGYS--YLMKKSLY 146 (345) T ss_pred eee-echHHHhhccCCCCCCHHHHHHH-HHHHHhcCCeEEEEEEcCCCcEEEEEEEcCceeEEEEeCCee--EEEEEeEe Confidence 222 22222334589999999999865 578999999999999999999999999999999887765432 22222222 Q ss_pred CcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCC-CCchH-HHHHH Q lcl|Aclame:pro 152 PKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGG-GLLSD-KDKAS 229 (392) Q Consensus 152 ~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~-~~~~~-~~~~~ 229 (392) ...+..+.+++++|||++.+++.+..+|+|++..+..++....++.+++.++|+||++|++|+.+++. .++++ +..++ T Consensus 147 ~~~g~~~~~~~~dVihir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NG~~p~~Il~~~d~~l~~e~~~~lk~ 226 (345) T protein:vir:37 147 DTAQEIYRYDAKDIIFIKLYDPMQQVYGSPDYVGGIQSALLNSDATVFRRRYFSNGAHMGFILYSTDPDLTEEMEEEIAR 226 (345) T ss_pred cCCceEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEecCCCCCHHHHHHHHH Confidence 23456788999999999998888888999999999999999999999999999999999999998643 33333 22233 Q ss_pred HHHHHhccccCCceeec-----cCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc---cch-HHHHH Q lcl|Aclame:pro 230 RSRSFMKRSRSGGPVVL-----DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ---QSS-IQQIS 300 (392) Q Consensus 230 ~~~~~~~~~~~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~---~~~-~~~~~ 300 (392) ..+...|.+|.++++++ ++|++|++++.+++|+||+|.+++++++||++|||||.++|...++ .++ +++.+ T Consensus 227 ~~~~~~g~~n~~~~~i~~p~g~~~G~~~~pls~~~~d~qf~e~k~~~~~dIa~a~~VPp~llGi~~~~~~~~~~~e~~~~ 306 (345) T protein:vir:37 227 KISESKGVGNFRSMFVNIANGHPDGLKVIPIGDTGTKDEFANIKNISAQDVLTAHRFPAGLSGIIPTNTGGLGDPLKYRE 306 (345) T ss_pred HHHHhcCcccccceEEEcCCCcccceEEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCccCCCCCCcccHHHHHH Confidence 44556788888888887 6899999999999999999999999999999999999999974432 233 45678 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh----hhhccchhhhhhcChHHHHH Q lcl|Aclame:pro 301 GMYASALNRYLRPAISELEYKLS----DHISVNMRPAIDPLGDNYLS 343 (392) Q Consensus 301 ~~~~~~l~p~l~~i~~~l~~~l~----~~~~~d~~~~~~~~~~~~~~ 343 (392) .|++++|.|+++.|++++++.+. ..+.||...+ ++ T Consensus 307 ~f~~~~l~P~~~~ie~~ln~~~~~~~~~~i~F~~~~L--------~~ 345 (345) T protein:vir:37 307 VYHYDEVMPLQEIIAETINQDPEIKNLLKIKFREQNF--------AK 345 (345) T ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCcceEEecchhh--------cC Confidence 99999999999999999997541 1233433322 22 No 99 >protein:vir:3743 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043484;genbank:gi:9628619;genbank:GeneID:1261113 Probab=100.00 E-value=2.7e-47 Score=275.88 Aligned_cols=309 Identities=8% Similarity=-0.035 Sum_probs=211.9 Q ss_pred chhhhhhccccccccc-----ccccccccCcchhhhhhhccCC-------CCccc----chhhhh----cchHHHHHHHH Q lcl|Aclame:pro 3 LPILNFINQTNDPPEA-----GSVQSYFPDGNDAQIMESLLGD-------NNEWV----SARAAL----RNSDLFSIILQ 62 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-------~~~~~----~~~~al----~~~~v~~~i~~ 62 (392) |+ +....+.. ...+.... ....+.-.++..+ ++.++ +..... .++...+||.. T Consensus 1 ~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~~epp~~~~~la~~~~~~~~h~~~i~~ 73 (345) T protein:vir:37 1 MK------TNVKTDNKKGIVIAPINDRTF-SLSEITASPALDYVGIGFDENYNCYLPPVNRHALAKLPHQNAQHGGILHS 73 (345) T ss_pred CC------ccccccchhhhcCCCceEEEe-ecCCcccchhhcccceeeecCCccccCCCCHHHHHHHhhcchhhcchhhh Confidence 32 21111110 00000000 0000000111111 11121 111110 13334444444 Q ss_pred HHHhhhhCceeeecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCce Q lcl|Aclame:pro 63 LSSDLAIVKINAEKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENG 142 (392) Q Consensus 63 ia~~ia~lp~~~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~ 142 (392) -++.++ ...+||+.||+++|++ ++.+++++||||++++|+..|++++|+|++|.+|++..+. +. T Consensus 74 k~n~l~-------------~~~~Pn~~~t~~~f~~-~v~d~ll~Gnay~~i~rn~~G~~~~L~pl~~~~vr~~~d~--~~ 137 (345) T protein:vir:37 74 RANMVS-------------ATYEGGKALSKMEMRA-LCLNLIQFGDVGLLKVRNGFGQVVRLVPLSSLYLRVHKDG--GY 137 (345) T ss_pred hhhHHh-------------hccCCCCCCCHHHHHH-HHHHHHhcCCeEEEEEECCCCCEEEEEEecCceeEEeecC--Ce Confidence 444332 2448999999999975 5578999999999999999999999999999999887654 33 Q ss_pred EEEEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCC-CC Q lcl|Aclame:pro 143 MYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGG-GL 221 (392) Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~-~~ 221 (392) .+..........+....+++++|||++.+++.+..+|+|++..+..++....+++++..++|+||++|++|+.+++. .+ T Consensus 138 ~~~~~~~~~~~~g~~~~~~~~eViHir~~~~~~~~~Gl~~~~~a~~si~l~~~a~~~~~~~f~NGa~~~~Il~~t~~~l~ 217 (345) T protein:vir:37 138 SYLMKKSLYDTAQEIYRYDAKDIIFIKLYDPMQQVYGSPDYVGGIQSALLNSDATVFRRRYFSNGAHMGFILYSTDPDLT 217 (345) T ss_pred eEEEeeeeeccCceEEEEccccEEEEcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCC Confidence 33222222233456788999999999998887788999999999999999999999999999999999999987653 33 Q ss_pred chH--HHHHHHHHHHhccccCCceeec-----cCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccccc- Q lcl|Aclame:pro 222 LSD--KDKASRSRSFMKRSRSGGPVVL-----DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ- 293 (392) Q Consensus 222 ~~~--~~~~~~~~~~~~~~~~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~- 293 (392) +++ +.++++. ...+.+|.++++++ ++|+++++++.+++|+||++++++++++||++|||||.++|...+++ T Consensus 218 ~e~~~~lk~~~~-~~~g~~n~~~~~i~~~~g~~~G~~~~pl~~~~~d~qf~e~k~~~~~dI~~a~~VPp~liGi~~~~t~ 296 (345) T protein:vir:37 218 EEMEEEIARKIS-ESKGVGNFRSMFVNIAGGHPDGLKVIPIGDTGTKDEFANIKNISAQDVLTAHRFPAGLSGIIPTNTG 296 (345) T ss_pred HHHHHHHHHHHH-HhcCccccCceeEecCCCCccceeEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhccccCCCC Confidence 333 2233333 34466676666665 57899999999999999999999999999999999999999754322 Q ss_pred --ch-HHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhccchhhhhh Q lcl|Aclame:pro 294 --SS-IQQISGMYASALNRYLRPAISELEYKLS----DHISVNMRPAID 335 (392) Q Consensus 294 --~~-~~~~~~~~~~~l~p~l~~i~~~l~~~l~----~~~~~d~~~~~~ 335 (392) ++ +++.+.|++++|.|+++.|++++|+.+. ..+.||...+.+ T Consensus 297 ~~s~~e~~~~~f~~~~l~P~~~~ie~~ln~~~e~~~~~~i~F~~~~l~k 345 (345) T protein:vir:37 297 GLGDPLKYREVYHYDEVMPLQEIIAETINQDPEIKNLLKIKFREQNFAK 345 (345) T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcceEEECchhhcC Confidence 33 4578899999999999999999997541 235666555555 No 100 >protein:vir:5691 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839850;genbank:gi:30065705;genbank:GeneID:1260599 Probab=100.00 E-value=9.3e-48 Score=278.42 Aligned_cols=312 Identities=11% Similarity=0.079 Sum_probs=206.6 Q ss_pred chhhhhhccccccc---------------ccccccccccCcchhhhhhhcc-CCCCcccchhhhhcchHHHHHHHHH--H Q lcl|Aclame:pro 3 LPILNFINQTNDPP---------------EAGSVQSYFPDGNDAQIMESLL-GDNNEWVSARAALRNSDLFSIILQL--S 64 (392) Q Consensus 3 Mg~~n~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~al~~~~v~~~i~~i--a 64 (392) |. ++...+ ++.+.+.+.+.+..+.+...+- -.++.++.+ |.-+.++-.+ | T Consensus 1 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~p------p~~~~~la~~~~a 68 (344) T protein:vir:56 1 MS------KKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEP------PVSFTGLAKSLRA 68 (344) T ss_pred CC------CCCCCCCchhhHHhhcCCCceEEEEcCCceeecCcchhhhHHHhhhcCccccC------CCCHHHHHHHHhh Confidence 32 221111 1111122222111111110000 001111111 1111111111 1 Q ss_pred HhhhhCceeeecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEE Q lcl|Aclame:pro 65 SDLAIVKINAEKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMY 144 (392) Q Consensus 65 ~~ia~lp~~~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~ 144 (392) +.--+-++..++ ......-+||++||+++| +.++.+++++||||++++|+..|++++|+|+++.+|++..+.+ . + T Consensus 69 ~~~h~s~i~~k~-n~l~~~~~Pnp~~t~~~f-~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~v~~~~~~~--~-~ 143 (344) T protein:vir:56 69 AVHHSSPIYVKR-NILASTFIPHPWLSQQDF-SRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--V-Y 143 (344) T ss_pred hhhhCccceehh-hhHHhhcCCCCCCCHHHH-HHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCceeEEeecCC--E-E Confidence 111111222211 111224589999999999 5678899999999999999999999999999999999876543 2 2 Q ss_pred EEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCC-CCch Q lcl|Aclame:pro 145 YNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGG-GLLS 223 (392) Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~-~~~~ 223 (392) +.+. ..+..+.+++++|||++.+++.+..+|+||+..+..++....+++++..++|+||++|++|+.+++. .+++ T Consensus 144 ~~~~----~~g~~~~~~~~dIiHir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~Il~~~d~~ls~e 219 (344) T protein:vir:56 144 WWVP----SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRN 219 (344) T ss_pred EEEe----cCCeEEEEcCccEEEECCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHH Confidence 2222 2356678999999999998887788999999999999999999999999999999999999998653 4433 Q ss_pred HHH--HHHHHHHHhccccCCceeec------cCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc--- Q lcl|Aclame:pro 224 DKD--KASRSRSFMKRSRSGGPVVL------DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ--- 292 (392) Q Consensus 224 ~~~--~~~~~~~~~~~~~~g~~~vl------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~--- 292 (392) +.+ ++++.+ ..+ .++|++++| ++|++|++++.++.|+||+|++++++++||++|||||.++|+..++ T Consensus 220 ~~~~lk~~~~~-~~g-~~~~r~l~l~~p~g~~~G~~~~pis~~~~d~qf~e~k~~s~~eIa~afrVPp~llGi~~~~t~~ 297 (344) T protein:vir:56 220 DIEMLRENMVK-SKG-RNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGS 297 (344) T ss_pred HHHHHHHHHHH-hcC-CCCccceEEecCCCCccceeEEEcCCChHHHHHHHHHHhhHHHHHHHhCCCHHHhccCCCCCCc Confidence 322 233333 333 467888887 5799999999999999999999999999999999999999975433 Q ss_pred cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hccchhhhhhcCh Q lcl|Aclame:pro 293 QS-SIQQISGMYASALNRYLRPAISELEYKLSDH-ISVNMRPAIDPLG 338 (392) Q Consensus 293 ~~-~~~~~~~~~~~~l~p~l~~i~~~l~~~l~~~-~~~d~~~~~~~~~ 338 (392) .+ .+++.+.|++++|.|+++.|++ ++.+|+.+ ++|+.-.+-..|. T Consensus 298 ~~n~eq~~~~f~~~tL~Pl~~~ie~-~n~~l~~~~~~F~~y~l~~~~~ 344 (344) T protein:vir:56 298 LGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH-HHhhhccccccCCCccccccCC Confidence 23 3456889999999999999985 77777643 3443322222222 No 101 >protein:vir:6058 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878199;genbank:gi:33438898;genbank:GeneID:1457733 Probab=100.00 E-value=8.1e-48 Score=278.76 Aligned_cols=314 Identities=12% Similarity=0.098 Sum_probs=205.8 Q ss_pred chhhhhhccccccc-----------ccccccccccCcchhhhhhhcc-CCCCcc----cchhhhhcchHHHHHHHHHHHh Q lcl|Aclame:pro 3 LPILNFINQTNDPP-----------EAGSVQSYFPDGNDAQIMESLL-GDNNEW----VSARAALRNSDLFSIILQLSSD 66 (392) Q Consensus 3 Mg~~n~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~al~~~~v~~~i~~ia~~ 66 (392) |. ..-++...+. .+.+.+.+.+....+.....+- -.++.+ ++... | ..+++ |+. T Consensus 1 m~--~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~-l-----a~~~~--a~~ 70 (344) T protein:vir:60 1 MS--KKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTG-L-----AKSLR--AAV 70 (344) T ss_pred CC--cccCCCCCchHHhhcCCcCcEEEEEcCCceeecCCcchhHHHHhhhcCccccCCCCHHH-H-----HHHHH--hhh Confidence 22 1111100000 0111111211111111110000 001111 11111 0 01111 111 Q ss_pred hhhCceeeecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEE Q lcl|Aclame:pro 67 LAIVKINAEKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYN 146 (392) Q Consensus 67 ia~lp~~~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~ 146 (392) ..+-+++..+ .......+||++||+++| +.++.+++++||||++++|+..|++++|+|+++..|++..+.+. ++. T Consensus 71 ~h~~~i~~k~-n~l~~~~~Pn~~~t~~~f-~~~~~d~ll~Gnay~~i~rn~~G~~~~L~~l~~~~vr~~~~~~~---~~~ 145 (344) T protein:vir:60 71 HHSSPIYVKR-NILASTFIPHPWLSQQDF-SRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV---YWW 145 (344) T ss_pred hhccchhhhh-hHHHhhccCCCCCCHHHH-HHHHHHHHhcCCeEEEEEECCCCcEEEEEEcCcceEEEeecCCe---EEE Confidence 1111222211 111124589999999999 56788999999999999999999999999999999998766432 222 Q ss_pred EEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCC-CCchHH Q lcl|Aclame:pro 147 ITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGG-GLLSDK 225 (392) Q Consensus 147 ~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~-~~~~~~ 225 (392) +. ..+..+.+++++|||++.+++.+..+|+||+..+..++.+..+++.+..++|+||++|++|+.+++. .++++. T Consensus 146 v~----~~~~~~~~~~~eIiHir~~~~~~~~yGlsp~~~a~~si~l~~~a~~~~~~~f~NG~~pg~il~~~~~~ls~e~~ 221 (344) T protein:vir:60 146 VP----SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDI 221 (344) T ss_pred Ec----cCCeEEEEcCccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHHHH Confidence 22 2345678999999999998887788999999999999999999999999999999999999998653 443332 Q ss_pred H--HHHHHHHHhccccCCceeec------cCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc---cc Q lcl|Aclame:pro 226 D--KASRSRSFMKRSRSGGPVVL------DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ---QS 294 (392) Q Consensus 226 ~--~~~~~~~~~~~~~~g~~~vl------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~---~~ 294 (392) + ++++.. ..+. ++++.+++ ++|++|++++.++.|+||+|++++++++||++|||||.++|..+++ .+ T Consensus 222 ~~ik~~~~~-~~g~-~~~r~~~l~~p~g~~~g~~~~pis~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~~ 299 (344) T protein:vir:60 222 EMLRENMVK-SKGR-NNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLG 299 (344) T ss_pred HHHHHHHHH-hcCC-CCCcceEEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhcccCCCCCccc Confidence 2 223333 3344 55666666 5799999999999999999999999999999999999999975443 23 Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hccchhhhhhcCh Q lcl|Aclame:pro 295 -SIQQISGMYASALNRYLRPAISELEYKLSDH-ISVNMRPAIDPLG 338 (392) Q Consensus 295 -~~~~~~~~~~~~l~p~l~~i~~~l~~~l~~~-~~~d~~~~~~~~~ 338 (392) .+++.+.|++++|.|+++.|+ +++.+|+.+ ++|+.-.+-..|. T Consensus 300 n~e~~~~~f~~~~L~Pl~~~~e-~ln~~lg~~~i~F~~~~l~~~d~ 344 (344) T protein:vir:60 300 DIEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) T ss_pred cHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCcccccCccccCCCCC Confidence 346788999999999999997 588888653 4444332222222 No 102 >protein:vir:1150 Length: 350 # NCBI annotation: predicted capsid packaging protein # Family: family:all:196 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490599;genbank:gi:17313219;genbank:GeneID:927315 Probab=100.00 E-value=3.6e-47 Score=275.18 Aligned_cols=307 Identities=10% Similarity=0.035 Sum_probs=206.8 Q ss_pred chhhhhhccccccc--------------------ccccccccccCcchhhh---hhhccCCCCcccchhhhhcchHHHHH Q lcl|Aclame:pro 3 LPILNFINQTNDPP--------------------EAGSVQSYFPDGNDAQI---MESLLGDNNEWVSARAALRNSDLFSI 59 (392) Q Consensus 3 Mg~~n~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~al~~~~v~~~ 59 (392) |.= -+++.... +..+.+.+.+.+..+.+ .+-+. .+..+.+ |.-+.+ T Consensus 1 m~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~y~~~~~--~~~~~~p------p~~~~~ 69 (350) T protein:vir:11 1 MSK---RRSHRRQQPVTVQSAQEGEFIPRQGGRAEAFTFGDPMPVLDGRGILDYLECWP--NGRWYEP------PLSMEG 69 (350) T ss_pred CCc---cccCCCcCccccCCcchhhhccccccceEEEEeCCceeecCcchhhHHHHHhh--cCccccC------CCCHHH Confidence 331 11111110 00011111111111100 00000 0000000 000111 Q ss_pred HHHHHHhh-----hhCceeeecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEecccccee Q lcl|Aclame:pro 60 ILQLSSDL-----AIVKINAEKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNT 134 (392) Q Consensus 60 i~~ia~~i-----a~lp~~~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~ 134 (392) ||+.+ .+-++.. ++.......+||++||+++|++ ++.+++++||||++++|+..|++++|+|+++.+|++ T Consensus 70 ---la~~~~~~~~h~~~l~~-k~n~l~~~~~Pn~~~t~~~f~~-~v~d~ll~Gnay~~~~rn~~G~~~~L~~l~~~~vr~ 144 (350) T protein:vir:11 70 ---LAKSVGSSVYLQSGLKF-KRNMLAKTFIPHRLLSRATFEQ-FSLDWLTFGSAYLEQPRSRLGTRMPLQAPLAKYMRR 144 (350) T ss_pred ---HHHHHhhhhhhccchhh-hhhhhhhcccCCCCCCHHHHHH-HHHHHHhcCCeEEEEEEcCCCCEEEEEEeCCceeEe Confidence 11111 1111111 1111222458999999999986 567899999999999999999999999999999988 Q ss_pred eecCCCceEEEEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEE Q lcl|Aclame:pro 135 YYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVL 214 (392) Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~ 214 (392) ..+.+ .++.+.. .+..+.+++++|||++.+++.+..+|+||+..+..++....++..+..++|+||++|++|+ T Consensus 145 ~~~~~---~~~~~~~----~~~~~~~~~~eVihir~~~~~~~~yGls~~~~a~~si~l~~~a~~~~~~~f~NGa~~~gil 217 (350) T protein:vir:11 145 GTDLE---TFYQVRS----WKDEHEFEKGSVIQLREADINQEIYGVPEWFCALQSALLNESATLFRRKYYNNGSHAGFIL 217 (350) T ss_pred eecCC---eEEEEee----CCeEEEECcccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEE Confidence 76543 2333322 3456789999999999998888899999999999999999999999999999999999999 Q ss_pred eeCC-CCCchHH-HHHHHHHHHhccccCCceeec-----cCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcC Q lcl|Aclame:pro 215 TVKG-GGLLSDK-DKASRSRSFMKRSRSGGPVVL-----DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIG 287 (392) Q Consensus 215 ~~~~-~~~~~~~-~~~~~~~~~~~~~~~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg 287 (392) .+++ ..++++. ..++..+...|.+|+|+++++ ++|++|++++.+++|+||+|.+++++++||++|||||.++| T Consensus 218 ~~~~~~ls~e~~~~l~~~~~~~~G~~N~~~~~v~~~~g~~~g~~~~pl~~~~~d~qf~e~k~~~~~eIa~a~~VPp~llG 297 (350) T protein:vir:11 218 YMTDAAQNEEDIDALRTALKTAKGPGNFRNLFVYAPNGKKEGIQLIPVSEVAAKDEFGSIKNISRDDQLAGLRVYPQLMG 297 (350) T ss_pred EecCCCCCHHHHHHHHHHHHHhcCccccCceeeecCCCCccceEEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhc Confidence 9875 3443332 223333456788899999888 46899999999999999999999999999999999999999 Q ss_pred Cccccc---ch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccc---hhhh Q lcl|Aclame:pro 288 GQGDQQ---SS-IQQISGMYASALNRYLRPAISELEYKLSDHI-SVN---MRPA 333 (392) Q Consensus 288 ~~~~~~---~~-~~~~~~~~~~~l~p~l~~i~~~l~~~l~~~~-~~d---~~~~ 333 (392) +..+++ ++ +++.+.|++++|.|+++.|++ ++.+|..++ .|+ +..+ T Consensus 298 i~~~~t~~~sn~e~~~~~f~~~~L~P~~~~ie~-ln~~l~~~~~~F~~~~~~~l 350 (350) T protein:vir:11 298 VVPQNAGGFGSISDAAAVWASLELAPMQTRLQQ-VNEMIGEEVVRFAQFDAPGL 350 (350) T ss_pred ccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHH-HHhhcCccccccCcccccCC Confidence 754322 33 456789999999999999985 777886542 222 1111 No 103 >protein:vir:78749 Length: 337 # NCBI annotation: putative portal protein # Family: family:all:196 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285643;genbank:gi:148727149;genbank:GeneID:5220095 Probab=100.00 E-value=6.4e-47 Score=273.82 Aligned_cols=309 Identities=8% Similarity=-0.016 Sum_probs=216.0 Q ss_pred hcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhh---Cceeee------cch- Q lcl|Aclame:pro 9 INQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAI---VKINAE------KKK- 78 (392) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~---lp~~~~------~~~- 78 (392) +.++...+.+....+. .. .|. ++ .++..+....+..|+...-+..+. -|+... +.. T Consensus 1 m~~~~~~~~~~~~~~~---~~---~~~--~~------~p~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~La~l~~~~~ 66 (337) T protein:vir:78 1 MTKRQQQPAQAAASSP---RP---SVV--FS------MPEAIDPTAWMTDYTGVFYNPYGEYYQPPIDRKGLAKVARANA 66 (337) T ss_pred CCCcccCcccccccCc---ee---EEE--ec------CcccccCcchhHhhhhhhhccCcceecCCCCHHHHHHHhhcch Confidence 2332222222111110 00 011 11 112223333455555555444433 233221 111 Q ss_pred --hhhhcccCCccCCHH----HHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCC Q lcl|Aclame:pro 79 --NQGIIDNPSTNANKH----GFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDP 152 (392) Q Consensus 79 --~~~~~~~PN~~~t~~----~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 152 (392) ...+..+||+.++.+ ++++.++.+++++||||++++|+..|++++|+|+++.+|++..+. ..++.. . T Consensus 67 ~h~~~L~~k~N~~~~~f~~~~~~~~~~~~d~ll~GNay~~~~rn~~G~~~~L~pl~~~~v~~~~d~---~~~~~~--~-- 139 (337) T protein:vir:78 67 HHGAILMARRNMVAGRFTNQRATITAFVHNYLQFGDGGLLKLRNSFGQVVGLHPLSSVYLRRREDG---CFVYLQ--Q-- 139 (337) T ss_pred hhhhHHHhhhccccccCcCcHHHHHHHHHHHHhhCCeEEEEEECCCCcEEEEEEeCCceeEeeeCC---eEEEEE--c-- Confidence 113556899876654 688999999999999999999999999999999999999877542 222221 1 Q ss_pred cceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCC-CCchHH-HHHHH Q lcl|Aclame:pro 153 KIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGG-GLLSDK-DKASR 230 (392) Q Consensus 153 ~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~-~~~~~~-~~~~~ 230 (392) .+..+.+++++|||+|.+++.+..+|+|++..+..++.+..+++.+..++|+||++|++|+.+++. .++++. ..++. T Consensus 140 -~~~~~~~~~~eIiHik~~~~~~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~NGa~p~~il~~~~~~l~~e~~~~lk~~ 218 (337) T protein:vir:78 140 -GKPNLIYRPDDVIWLAQYDPEQQVYGMPDYLGGLQSALLNQDATLFRRRYFLNGAHMGFIFYATDPNMDDDTEEEMKEM 218 (337) T ss_pred -CCceEEECCccEEEECCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeEEcCCCCCCHHHHHHHHHH Confidence 235678999999999999888888999999999999999999999999999999999999998764 333332 22344 Q ss_pred HHHHhccccCCceeec-----cCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc----cc-hHHHHH Q lcl|Aclame:pro 231 SRSFMKRSRSGGPVVL-----DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ----QS-SIQQIS 300 (392) Q Consensus 231 ~~~~~~~~~~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~----~~-~~~~~~ 300 (392) .+...|.+|.++++++ ++|++|++++.+++|+||+|++++++++||++|||||+++|...++ ++ .+++.+ T Consensus 219 ~~~~~G~~n~~~~~v~~~~g~~~Gi~~~pis~~~~d~qfle~k~~s~~eIa~a~~VPp~llGi~~~~~~~~~~n~e~~~~ 298 (337) T protein:vir:78 219 IANSKGVGNFRSMFVNIPDGKPDGIKLIPVGDIATKDEFAAIKGITAQDVLTAHRYPPALAGIIPTNGGGGLGDPEKYDA 298 (337) T ss_pred HHHhcCcccccceEEEcCCCCccceeEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcccccCCCcCccccHHHHHH Confidence 4567788899998888 6789999999999999999999999999999999999999964322 23 345678 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhcChHHHHHHHHHHH Q lcl|Aclame:pro 301 GMYASALNRYLRPAISELEYKLSDHISVNMRPAIDPLGDNYLSTISTAT 349 (392) Q Consensus 301 ~~~~~~l~p~l~~i~~~l~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~ 349 (392) .|++++|.|+++.|+++++.+|.+...+. ++......++ T Consensus 299 ~f~~~~L~P~~~~ie~~~n~~ll~~~~~~----------~f~~~~~~~~ 337 (337) T protein:vir:78 299 TYARNEVLPLCELVQDAINSAGLPRALWV----------TFRETIGAAV 337 (337) T ss_pred HHHHHHHHHHHHHHHHHHhhhcCChhhce----------eccccccccC Confidence 99999999999999999998876532110 0111111111 No 104 >protein:vir:2013 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046757;genbank:gi:9630328;genbank:GeneID:1261529 Probab=100.00 E-value=1.6e-46 Score=271.62 Aligned_cols=315 Identities=12% Similarity=0.096 Sum_probs=205.9 Q ss_pred chhhhhhccccccc------------ccccccccccCcchhhhhhhcc-CCCCcccchhhhhcchHHHHHHHHH--HHhh Q lcl|Aclame:pro 3 LPILNFINQTNDPP------------EAGSVQSYFPDGNDAQIMESLL-GDNNEWVSARAALRNSDLFSIILQL--SSDL 67 (392) Q Consensus 3 Mg~~n~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~al~~~~v~~~i~~i--a~~i 67 (392) |+= =+++...+ ++.+.+.+.+.+..+.+...+- -.++.++.+ |.-+.++-.+ |+.- T Consensus 1 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~v~~~~~~~~~~~~~~~~~~~~p------p~~~~~la~~~~a~~~ 71 (344) T protein:vir:20 1 MSK---KKGKTPQPAAKTMTASGPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEP------PVSFTGLAKSLRAAVH 71 (344) T ss_pred CCc---ccCCCCcchhhhhhccCCceEEEEcCCceEecCcchhhhhhhhhhcCceecC------CCCHHHHHHHHhhhhh Confidence 331 11111100 0011111111111111100000 001111110 1001111111 1111 Q ss_pred hhCceeeecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEE Q lcl|Aclame:pro 68 AIVKINAEKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNI 147 (392) Q Consensus 68 a~lp~~~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~ 147 (392) .+-++..++ ......-+||+.||+++| +.++.+++++||||++++|+..|++++|+|+++.+|++..+.+ . ++.+ T Consensus 72 h~~~i~~k~-n~l~~~~~Pn~~lt~~~f-~~~~~d~ll~Gnay~~i~rn~~G~~~~L~pl~~~~vr~~~~~~--~-~~~~ 146 (344) T protein:vir:20 72 HSSPIYVKR-NILASTFIPHPWLSQQDF-SRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--V-YWWV 146 (344) T ss_pred hCccceehh-hhHHHhccCCCCCCHHHH-HHHHHHHHhcCCeEEEEEECCCCcEEEEEEcCCceeEeeecCC--E-EEEE Confidence 122232222 111224589999999999 5678899999999999999999999999999999999876543 2 2222 Q ss_pred EecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCC-CCchHHH Q lcl|Aclame:pro 148 TFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGG-GLLSDKD 226 (392) Q Consensus 148 ~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~-~~~~~~~ 226 (392) . ..+..+.+++++|||++.+++.+..+|+||+..+..++.+..+++.+..++|+||++|++|+.+++. .++++.+ T Consensus 147 ~----~~~~~~~~~~~eIiHir~~~~~~~~yGls~~~~a~~si~l~~~a~~~~~~~f~NGa~p~~Il~~~d~~l~~e~~~ 222 (344) T protein:vir:20 147 P----SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIE 222 (344) T ss_pred c----cCCeEEEEcCccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHHHHH Confidence 2 2345678999999999998887788999999999999999999999999999999999999998653 3333322 Q ss_pred --HHHHHHHHhccccCCceeec------cCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc---cc- Q lcl|Aclame:pro 227 --KASRSRSFMKRSRSGGPVVL------DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ---QS- 294 (392) Q Consensus 227 --~~~~~~~~~~~~~~g~~~vl------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~---~~- 294 (392) ++++.. ..+. ++++.+++ ++|++|++++.++.|+||+|.+++++++||++|||||.++|+..++ .+ T Consensus 223 ~ik~~~~~-~~g~-~n~r~l~l~~p~g~~~gi~~~pis~~~~d~qf~e~k~~s~~eIa~af~VPp~llGi~~~~t~~~~n 300 (344) T protein:vir:20 223 MLRENMVK-SKGR-NNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGD 300 (344) T ss_pred HHHHHHHH-hcCC-CCccceEEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhccCCCCCCcccc Confidence 223332 3333 55777776 5799999999999999999999999999999999999999974432 23 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hccchhhhhhcChH Q lcl|Aclame:pro 295 SIQQISGMYASALNRYLRPAISELEYKLSDH-ISVNMRPAIDPLGD 339 (392) Q Consensus 295 ~~~~~~~~~~~~l~p~l~~i~~~l~~~l~~~-~~~d~~~~~~~~~~ 339 (392) .+++.+.|++++|.|+++.|+ +++.+|+.+ ++|+...+ +.+.+ T Consensus 301 ~e~~~~~f~~~~l~P~~~~~e-~in~~lg~~~i~F~~~~l-~~~d~ 344 (344) T protein:vir:20 301 IEKVAKVFVRNELIPLQDRIR-EINGWLGQEVIRFKNYSL-DTDND 344 (344) T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhcCCcccccCcccc-ccCCC Confidence 356788999999999999998 578787643 35543322 22222 No 105 >protein:vir:98853 Length: 219 # NCBI annotation: hypothetical protein # Family: family:all:196 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654729;genbank:gi:109302914;genbank:GeneID:4156058 Probab=100.00 E-value=1.8e-38 Score=227.50 Aligned_cols=202 Identities=8% Similarity=-0.031 Sum_probs=152.3 Q ss_pred ceeeecCCCceEEEEEE-ecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCc Q lcl|Aclame:pro 132 VNTYYFEYENGMYYNIT-FDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNV 210 (392) Q Consensus 132 v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~ 210 (392) |.+ ..++. ++|.+. ......+..++++++||+|+|.+++.+.++|+||+..++.++....++++|+.++|+||++| T Consensus 1 ~r~--~~dg~-~~y~~~~~~~~~~g~~~~~~~~eilH~r~~~~~~~~~Glspi~~a~~~i~~~~aa~~~~~~~f~Ng~~p 77 (219) T protein:vir:98 1 MRV--CKDGN-YKYLMKKSLYDTKSEIYEYNKNDVIFIKLYDPMQQVYGSPDYVGGITSALLNSDATIFRRRYYSNGAHM 77 (219) T ss_pred Cce--eecCe-EEEEEecceecCCceeEEeccccEEEecCCCCCCCcceecHHHHHHHHHHHHHHHHHHHHHHHhcCCCC Confidence 333 33333 333332 22233456789999999999998877788999999999999999999999999999999999 Q ss_pred ceEEeeCCC-CCchH--HHHHHHHHHHhccccCCceeec-----cCCceEEeccCChhhHHHHHHHHHHHHHHHHHhccc Q lcl|Aclame:pro 211 PGVLTVKGG-GLLSD--KDKASRSRSFMKRSRSGGPVVL-----DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLP 282 (392) Q Consensus 211 ~~i~~~~~~-~~~~~--~~~~~~~~~~~~~~~~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP 282 (392) +||+++++. .++++ +.++.+ +...|..|+++++++ ++|++|++++.+++|+||+|++++++.+||++|||| T Consensus 78 ~gil~~~~~~l~~e~~~~~~~~~-~~~~g~~n~~~~~l~~~gg~~~G~~~~~~~~~~~d~qfle~rk~~~~eIa~~fgVP 156 (219) T protein:vir:98 78 GFILYSTDPDMTEEMEDEIAERI-RDSKGVGNFRSMFVNIAGGHPDGLKVIPIGDTGQKDEFANIKNISAQDVLTSHRFP 156 (219) T ss_pred ceEEEeCCCCCCHHHHHHHHHHH-HHhcCcccccceeEecCCCCccceeEEEccCCHHHHHHHHHHHhhHHHHHHHhCCC Confidence 999998763 44333 223333 445677787777776 579999999999999999999999999999999999 Q ss_pred HHHcCCcccc---cch-HHHHHHHHHHHHHHHHHHHHHHHHHHhh-h---hhccchhhhhhcC Q lcl|Aclame:pro 283 DSYIGGQGDQ---QSS-IQQISGMYASALNRYLRPAISELEYKLS-D---HISVNMRPAIDPL 337 (392) Q Consensus 283 ~~~lg~~~~~---~~~-~~~~~~~~~~~l~p~l~~i~~~l~~~l~-~---~~~~d~~~~~~~~ 337 (392) |++||..+++ +++ +++...|+++||.|++..|+++||.++. + ++.|+....-+.+ T Consensus 157 p~~lG~~~~~~~~~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~~~~~~~~~~~F~~~~~~d~~ 219 (219) T protein:vir:98 157 PGLSGIIPVNTAGLGDPLKIREAYQADEVLPLQEIIAESINSDYEIKSALKVNFKQPEKRDKN 219 (219) T ss_pred HHHcccccCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccEEeecCcccccCC Confidence 9999964322 233 4567899999999999999999998743 2 2333322222222 No 106 >protein:vir:5249 Length: 437 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852754;genbank:gi:31544029;interpro:IPR006445;uniprot:Q7Y5U6;genbank:GeneID:2753529 Probab=99.90 E-value=6.9e-24 Score=147.55 Aligned_cols=369 Identities=12% Similarity=0.005 Sum_probs=216.5 Q ss_pred chhhhhhccccc----ccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecch Q lcl|Aclame:pro 3 LPILNFINQTND----PPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKK 78 (392) Q Consensus 3 Mg~~n~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~ 78 (392) |.+.+.+.+... ..........++. ......+. ..+.+++.+.++|+.+|.++-+.++++.-.+ T Consensus 1 ~~~~D~~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~l~-a~Y~~~~l~~~~vd~~a~d~~r~~~~i~~~d 68 (437) T protein:vir:52 1 MKFFDGIKSLALKLGSKQEQTYYSPSLSL-----------TDDLVQLE-ALWRDNWIANKVCIKRPEDMVRNWREIYSND 68 (437) T ss_pred CchhhhhHhHHhcCCCccccceeecCccc-----------cccHHHHH-HHHHhCchhhHHhhcchHHhhcCCceEecCC Confidence 666655443211 1100011100000 00011111 2244578899999999999999988885422 Q ss_pred h--h---hhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEeccc---------CCceeEEEEeccccceeeecCC----- Q lcl|Aclame:pro 79 N--Q---GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNA---------NGADMKWEYLRPSQVNTYYFEY----- 139 (392) Q Consensus 79 ~--~---~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~---------~G~~~~l~~l~~~~v~~~~~~~----- 139 (392) . . .+...=+.. .-.+-+...+.+.-++|.|++++..+. .|.+..+.++++.+|++..... T Consensus 69 ~~~~~~~~~~~~~~~l-~~~~~l~~a~~~~rl~G~a~i~i~~d~~~~~~pl~~~~~~~~~~v~~~~~v~~~~~~~~dp~s 147 (437) T protein:vir:52 69 LNSKQLDLFTKFERSL-KLRETLTKALQWSSLYGSVGLLVVTDSQNTSAPLKPTERLKRLIILPKWKISPTGTKDDDVLS 147 (437) T ss_pred CCHHHHHHHHHHHHhh-cHHHHHHHHHHhcccccceEEEEEecCCCcccccccCCceeEEEEechhhccccccccccccc Confidence 1 1 111111111 122333344444558999999998765 3688899999999988533222 Q ss_pred ---CceEEEEEEecCCcceeeEEEecceEEEecCC---CccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceE Q lcl|Aclame:pro 140 ---ENGMYYNITFDDPKIEPILQAPQSDLIHMKLL---SIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGV 213 (392) Q Consensus 140 ---~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~---~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i 213 (392) +...+|.+ .+ .+..+.+.++.|+||.+. .......|.|.++.+.+.|.....+......++.+.... + T Consensus 148 ~~fg~p~~y~v--~~--~~~~~~iH~SRii~~~~~~~~~~~~~~~G~s~le~~~~~i~~~~~~~~~~~~l~~~~~~~--v 221 (437) T protein:vir:52 148 PNFGRYSEYSI--LG--GSQSITVHHSRLIILNANDAPLSDNDIWGVSDLEKIIDVLKRFDSASVNVGDLIFESKID--I 221 (437) T ss_pred cccCcceEEEE--ec--CCcceeEccceeEEecCccCCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCC--c Confidence 22223322 22 233568999999999753 234556799999999999999999988888877765444 4 Q ss_pred EeeCC---CCCc-hHHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCc Q lcl|Aclame:pro 214 LTVKG---GGLL-SDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQ 289 (392) Q Consensus 214 ~~~~~---~~~~-~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~ 289 (392) +++++ .... .++...++.+......+.+++++++.+.+|++++.+..++ .+.......+||++++||...|.+. T Consensus 222 ~k~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~sgl--~~~l~~~~~~iaaa~~iP~t~L~G~ 299 (437) T protein:vir:52 222 FKIAGLSDKIAAGMENEVASVISAVQEIKSATNSLLLDAENEYDRKELTFTGL--KDLLTEFRNAVAGAADMPVTILFGQ 299 (437) T ss_pred eecchHHHHhcCCcHHHHHHHHHHHHHhcCCCceEEEcCCcceEEEecCcCCH--HHHHHHHHHHHHHHhcCchhhhcCc Confidence 45543 1111 1223333333333334557899999999999998887655 4777888899999999999888543 Q ss_pred ccc-c-chHHHHHHHHH-------HHHHHHHHHHHHHHHHHhh----hhhccchhhhhhcChHHH-------HHHHHHHH Q lcl|Aclame:pro 290 GDQ-Q-SSIQQISGMYA-------SALNRYLRPAISELEYKLS----DHISVNMRPAIDPLGDNY-------LSTISTAT 349 (392) Q Consensus 290 ~~~-~-~~~~~~~~~~~-------~~l~p~l~~i~~~l~~~l~----~~~~~d~~~~~~~~~~~~-------~~~~~~~~ 349 (392) ..+ - +..++.+.||. ..+.|.++.+.+.+-...+ +++.+.+..+..++.+++ ++.+..++ T Consensus 300 s~~Glasge~D~~~yyd~i~~~Qe~~l~p~le~l~~~i~~~~~g~~~~~~~~~f~pL~~~s~kekae~~~~~a~a~~~~~ 379 (437) T protein:vir:52 300 SVSGLASGDEDIQNYHEAIRRLQETRLRPIFEIIDPLICNELFGGLPADWWFEFVPLTTVKQEQQINMLNTFATAANTLI 379 (437) T ss_pred CcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCcCCcCHHHHHHHHHHHHHHHHHHH Confidence 222 1 22334555544 4566666666665544432 245555556666665544 44577888 Q ss_pred hCCccCHHHHHHHHHhCCCCC---c-ccccccCCC----------CCCCCCCCCCCC Q lcl|Aclame:pro 350 RWGALAENQATFVLQEAGYIP---K-DLPAPENTN----------KKTTGQSNEPVP 392 (392) Q Consensus 350 ~~g~~t~nE~R~~l~~~g~~~---~-e~~~~~~~~----------~~~~gd~~~p~p 392 (392) ++|+++++|+|+.|...|.-+ . ++...++-. ..++.+.++|.| T Consensus 380 ~~g~i~~~e~r~~L~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (437) T protein:vir:52 380 QNGVLNEYQIANELRESGLFANISAEHIEELKNADEFAGNFEEPEKMEGAQVQNSED 436 (437) T ss_pred hcCCCCHHHHHHHHHhcCCCCCCCccccccccCCCCCCCccCCCCCCCCCCCCCCCC Confidence 999999999999998776432 1 111121111 111222233333 No 107 >protein:vir:107742 Length: 537 # NCBI annotation: gp28 # Family: family:all:297 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024875;genbank:gi:48697517;genbank:GeneID:2948359 Probab=99.82 E-value=4.1e-20 Score=126.89 Aligned_cols=379 Identities=10% Similarity=-0.061 Sum_probs=201.7 Q ss_pred Ccchhhhh----------hc---------cccc--ccccccccccccCcch---hhhhhhccCC---CC-------cccc Q lcl|Aclame:pro 1 MILPILNF----------IN---------QTND--PPEAGSVQSYFPDGND---AQIMESLLGD---NN-------EWVS 46 (392) Q Consensus 1 m~Mg~~n~----------~~---------~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~-------~~~~ 46 (392) =.||+|.. .. .... .....+..+-+..... ...+....+. ++ ..+. T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (537) T protein:vir:10 23 PRVGIFGAGDDEKPFTRAQLVHQTMMAIRDHAIAMMPKVDGSHPDMAMDGLDVEGGTFSAYANPNLSEGLVLWYAQQAFI 102 (537) T ss_pred cccCCCcccchhhHHHHHHhhhhccCCCCCccCcccccccccccchhccccccchhhhhhhccccccchhhhhccccCCc Confidence 44444310 00 0000 0000000000000000 0000000000 00 0011 Q ss_pred h----hhhhcchHHHHHHHHHHHhhhhCceeeecchh--------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEe Q lcl|Aclame:pro 47 A----RAALRNSDLFSIILQLSSDLAIVKINAEKKKN--------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRW 114 (392) Q Consensus 47 ~----~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~ 114 (392) . ..+.+++.+..+|+.+|.++-+-++++.-.+. ..+...-+....+..|.+.+.+ ..++|.+++++. T Consensus 103 ~~~l~a~Y~~~~l~r~iVd~~A~d~~r~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~~~~l~~a~~~-~rlyG~~~i~i~ 181 (537) T protein:vir:10 103 GHQMCALIATHWLVNKACSQMPRDAMRKGYKIISDDGNELDPKDAKFIDRYDRAFNIKKHAIQFVRK-GRIFGIRIALFK 181 (537) T ss_pred cHHHHHHHHhCchhhhhhhhhhHHhhcCCceeecCCcccccHHHHHHHHHHHHHhhHHHHHHHHHHh-cccccceEEEEe Confidence 1 12335788999999999999888887754221 1222233334445555555554 446898888764 Q ss_pred c---c-------------cCCceeEEEEeccccceeeecC----C-----CceEEEEEEecCCcceeeEEEecceEEEec Q lcl|Aclame:pro 115 R---N-------------ANGADMKWEYLRPSQVNTYYFE----Y-----ENGMYYNITFDDPKIEPILQAPQSDLIHMK 169 (392) Q Consensus 115 r---~-------------~~G~~~~l~~l~~~~v~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~vih~~ 169 (392) - + ..|....+.+++|.++++.... + -+.+ ..|.+. ...+..+.|+|+. T Consensus 182 v~~~D~~~~~~Pl~~~~i~kg~~k~l~vidp~~~~~~~~~~~~~dp~sp~fg~P-~~y~v~------g~~iH~SRli~f~ 254 (537) T protein:vir:10 182 VDSPDPYYYEKPFNIDGVMPGAYKGIVQIDPYWCAPLLDAQASSNPVSMHFYEP-TYWLIN------GKKYHRSHLAIYI 254 (537) T ss_pred ecCcCCcccccccccccccccceeEEEEechhhcccccchhhhccCCccccCCc-eeeeec------CeEecceeEEEec Confidence 2 1 1234567888888888764211 1 0111 122222 2478999999997 Q ss_pred CCCcc------ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCC--CCCchHHHHHHHHHHHhccccCC Q lcl|Aclame:pro 170 LLSID------GGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKG--GGLLSDKDKASRSRSFMKRSRSG 241 (392) Q Consensus 170 ~~~~~------~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~g 241 (392) +.... ..+.|.|.++.+...|.....+......++.+.... +++++. ....++...++........+|. T Consensus 255 g~~~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l~~~~~~~--v~k~~~~~~l~~~~~~~~r~~~~~~~r~n~- 331 (537) T protein:vir:10 255 NDEVVDFLKPSYIYGGVPLPQQIMERVYAAERTANEGPMLAMTKRQT--VLKVDAAQVLANKQQFDETMSWWTATRDNY- 331 (537) T ss_pred CCCCchhhhcccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--eeeechHHhhcCHHHHHHHHHHHHhhcCCc- Confidence 54322 234699999999999999888888888877766544 334443 2233333333333333444444 Q ss_pred ceeeccC-CceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHc-CCccccc-ch-HHHHHHHHH------HHHHHHH Q lcl|Aclame:pro 242 GPVVLDD-LEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYI-GGQGDQQ-SS-IQQISGMYA------SALNRYL 311 (392) Q Consensus 242 ~~~vl~~-g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~l-g~~~~~~-~~-~~~~~~~~~------~~l~p~l 311 (392) +++++++ +.+|++++.+...+ .+......+.||.+.|||...| |....+. ++ .+..+.||. ..|.|.+ T Consensus 332 g~~~id~e~e~~e~~~~~lsgl--~~~l~~~~~~iAa~~~IP~t~L~G~sp~GlnatGe~D~~~yyd~I~~~Qe~l~p~l 409 (537) T protein:vir:10 332 QVRVVDKDNEDVVQIDTTLNDL--DKVIMNQYQLVCAIARTPAPKMLGTVPTGFNSTGDYEEASYHEECESTQDDMRPLI 409 (537) T ss_pred ceeEecCCCceeEEEeccCCCH--HHHHHHHHHHHHhhhCCCceeeccCCccccccchhHHHHHHHHHHHHHHHHHHHHH Confidence 4566665 68999888776654 4778888889999999999965 5432222 22 223444432 2467777 Q ss_pred HHHHHHHHHHhh---hhhccchhhhhhcChHHHHH-------HHHHHHhCCccCHHHHHHHHHhCC------CCCccccc Q lcl|Aclame:pro 312 RPAISELEYKLS---DHISVNMRPAIDPLGDNYLS-------TISTATRWGALAENQATFVLQEAG------YIPKDLPA 375 (392) Q Consensus 312 ~~i~~~l~~~l~---~~~~~d~~~~~~~~~~~~~~-------~~~~~~~~g~~t~nE~R~~l~~~g------~~~~e~~~ 375 (392) +.+.+.+.+..+ .++.+.+..+..++.+++++ .+..+++.|+++++|+|+.|...+ +.++...+ T Consensus 410 ~~l~~ll~~~~~~~~~~~~i~f~pL~~~s~kEkAei~~~~a~a~~~~~~~G~i~~~Evr~~L~~~~~~g~~~l~~~~~~e 489 (537) T protein:vir:10 410 DRHHQLVCRSHLRKRIRVKVEFPPMDAPKESERADTFLKKMQAAKLAFEMGAVDGVDVNEYLRMDPTLGFTSITPAMRPT 489 (537) T ss_pred HHHHHHHHHhcCCCCcceEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhccCccccccccCCCChh Confidence 776666654432 23444455666677666554 578889999999999999997642 22211111 Q ss_pred ccC------CCCCCCCCCCCCCC Q lcl|Aclame:pro 376 PEN------TNKKTTGQSNEPVP 392 (392) Q Consensus 376 ~~~------~~~~~~gd~~~p~p 392 (392) ..+ ..+-.+++...|.| T Consensus 490 d~e~~~~~~~~~~~~~~~~~~~~ 512 (537) T protein:vir:10 490 DAEDIDVDDEGKPVRIIEDQPAP 512 (537) T ss_pred hhhcccCCccCCcCCCCCCCCCc Confidence 110 01111222223333 No 108 >protein:vir:79647 Length: 435 # NCBI annotation: PorT # Family: family:all:297 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285520;genbank:gi:148734503;genbank:GeneID:5220005 Probab=99.81 E-value=8.3e-20 Score=125.20 Aligned_cols=376 Identities=12% Similarity=0.060 Sum_probs=205.6 Q ss_pred chhhhhhcccccc-cccccccccccCcchhhhhhhccCCCCcccch--hhhhcchHHHHHHHHHHHhhhhCceeeecchh Q lcl|Aclame:pro 3 LPILNFINQTNDP-PEAGSVQSYFPDGNDAQIMESLLGDNNEWVSA--RAALRNSDLFSIILQLSSDLAIVKINAEKKKN 79 (392) Q Consensus 3 Mg~~n~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~ 79 (392) ||+| ++++..+ ....++.+.+. +........+.......... ..+.+++.+..+|+.+|.+.-+-.+++...+. T Consensus 1 ~~~~--m~~~~~~~~~~D~~~~~~~-~~~g~~~~~~~~~~~~~~~~l~~~Y~~~~l~~~~Vd~~aed~~r~g~~i~g~~~ 77 (435) T protein:vir:79 1 MGVF--MSDKVKAITKEDGYNEIFG-SKDGTFRPNAFYMQRAAFKALSQFYEEDGMARRIVDVIPEEMVTPGFKVDGVKN 77 (435) T ss_pred CCcc--cccccccchhhcchhhhhc-ccccccccCcccCCcCCHHHHHHHHhcCchhhhhhccchHHhhcCCceecCCCh Confidence 9996 4333221 12222222111 00000000011111111111 22346788999999999999888887764333 Q ss_pred hhhccc-CCccCCHHHHHHHHHHHHHHhCCeeEEEec-c---------cCCceeEEEEeccccceeeecC-------CCc Q lcl|Aclame:pro 80 QGIIDN-PSTNANKHGFWQSMFAQLLLGGEAFAYRWR-N---------ANGADMKWEYLRPSQVNTYYFE-------YEN 141 (392) Q Consensus 80 ~~~~~~-PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r-~---------~~G~~~~l~~l~~~~v~~~~~~-------~~~ 141 (392) ...++. =....-+..| ...+.+..++|.+++++.- + ..|....+.++++.+|++.... ++. T Consensus 78 ~~~~~~~~~~l~~~~~l-~~a~~~~rl~G~~~i~i~~~d~~~~~~Pl~~~g~i~~i~v~d~~~i~~~~~~~dp~sp~fg~ 156 (435) T protein:vir:79 78 EKSFKSRWDELRLNAKI-IDALSWSRLFGGSAILAVVADNKMLKSPVKPGAQLEDIRVYDRYQITIHERETNARSVRYGE 156 (435) T ss_pred HHHHHHHHHHhhHHHHH-HHHHHhhhccccEEEEEEecCCCCcccccccCCceeeEEeechhhccchhhccCCcccccCc Confidence 222211 1111222333 3444445578988887763 2 2345668889999888764321 122 Q ss_pred eEEEEEEecCCcceeeEEEecceEEEecCC------CccccccCCCHH-HHHHHHHHHHHHHHHHHHHHHHccCCcceEE Q lcl|Aclame:pro 142 GMYYNITFDDPKIEPILQAPQSDLIHMKLL------SIDGGKTGISPL-YSLRRESKIQRASDRLTISSLNSSLNVPGVL 214 (392) Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~vih~~~~------~~~~~~~G~s~l-~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~ 214 (392) ..+|.+ ........+.+..+.|+|+.+. .+.....|.|++ +.+.+.+.....+......++.+.... ++ T Consensus 157 P~~y~v--~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~e~~~~~l~~~~~~~~~~~~l~~~~~~~--v~ 232 (435) T protein:vir:79 157 PKLYKI--SPGGDIPEFFVHYSRICIIDGERVSNEKRRQNDGWGASILNKRLIEAIVDYNYCQELATQLLRRKQQA--VW 232 (435) T ss_pred ceEEEE--ecCCCCCceEEcceeEEEecCCcchhhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--cc Confidence 233332 2222233568999999999643 233445699988 578898888888887777766554433 33 Q ss_pred eeCCC------CCchHHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCC Q lcl|Aclame:pro 215 TVKGG------GLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGG 288 (392) Q Consensus 215 ~~~~~------~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~ 288 (392) ++++- ........++.........+.+.+++.+++.+|++++.+..++ .+......++||++.|||...|.+ T Consensus 233 ~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~i~~~~e~~e~~~~~lsgl--~~~~~~~~~~iaaa~~IP~t~L~G 310 (435) T protein:vir:79 233 KARDLALMCDDEEGRYAARLRLAQVDDESGVGKAIGIDATDEEYEVLNSDVSGV--PEFLQEKIDRIVALTGIHEIIIKN 310 (435) T ss_pred cchhHHHhhcCccchHHHHHHHHHHHHhcCCCCceeEecCCcceEEEecccCCH--HHHHHHHHHHHHhhhCCCeeeecc Confidence 44321 1111222233333333344455566666667899988877654 578888899999999999987744 Q ss_pred -ccccc-chH-HHHHHHHHHHHHH----HHHHHHHHHHHHhh--hhhccchhhhhhcChHHH-------HHHHHHHHhCC Q lcl|Aclame:pro 289 -QGDQQ-SSI-QQISGMYASALNR----YLRPAISELEYKLS--DHISVNMRPAIDPLGDNY-------LSTISTATRWG 352 (392) Q Consensus 289 -~~~~~-~~~-~~~~~~~~~~l~p----~l~~i~~~l~~~l~--~~~~~d~~~~~~~~~~~~-------~~~~~~~~~~g 352 (392) +..+- ++. +..+.||. .|.- .++++.+.|-..+. +.+.+.+..+..++.+++ ++.+..+++.| T Consensus 311 ~s~~glnstgd~d~~~yyd-~i~~~Qe~~l~p~l~~l~~li~~s~d~~~~f~pL~~~sekEkAei~~~~a~a~~~~~~~g 389 (435) T protein:vir:79 311 KNTGGVSASQNTALETFYK-LIDRKRVEDYKPILEFLLPFMISETEWSIEFEPLSVPSDKDKAEIMAKNVESVVKLKAEQ 389 (435) T ss_pred CCccccccchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCCeEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcC Confidence 33222 332 23344433 2332 23333333333322 455556666666666554 45577788999 Q ss_pred ccCHHHHHHHHH----hCCCCCcc---cccccCCCC--CCCCCCCC Q lcl|Aclame:pro 353 ALAENQATFVLQ----EAGYIPKD---LPAPENTNK--KTTGQSNE 389 (392) Q Consensus 353 ~~t~nE~R~~l~----~~g~~~~e---~~~~~~~~~--~~~gd~~~ 389 (392) +++++|+|+.|. ..|+.+++ ++..++.+| .+.|..|+ T Consensus 390 ~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~d~~~~~~~e~g~~~ 435 (435) T protein:vir:79 390 AINLKETRDTLRSICPDLKIMDNDNIELPEPEDLDPEPGQEGGLNK 435 (435) T ss_pred CCCHHHHHHHHHHhccccCCCCcccccCCccccCCCCCCCCCCCCC Confidence 999999999884 33444433 333333332 23344555 No 109 >protein:vir:99563 Length: 862 # NCBI annotation: minor head protein-like protein # Family: family:all:297 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039808;genbank:gi:126011058;genbank:GeneID:4818258 Probab=99.78 E-value=2.2e-19 Score=122.87 Aligned_cols=373 Identities=10% Similarity=-0.033 Sum_probs=200.6 Q ss_pred Ccchhh--------hhhcccccccccccccccccCcchhhhhhhccCC--CCcccchhhhhcchHHHHHHHHHHHhhhhC Q lcl|Aclame:pro 1 MILPIL--------NFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGD--NNEWVSARAALRNSDLFSIILQLSSDLAIV 70 (392) Q Consensus 1 m~Mg~~--------n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~al~~~~v~~~i~~ia~~ia~l 70 (392) |.|++- |..-..-... ..+.+... .....++... .+..+. ..+.+++.+..+|+.+|.++-+- T Consensus 91 ~~~~~~~~~~Dgl~n~~~~lG~~~----~~s~y~~~--~~~~~~~~~~~f~gyql~-alY~~~~larkiVd~pAeDatR~ 163 (862) T protein:vir:99 91 AIKAITGFAMDDGGGAPVPIGAEG----KQSSYAVP--EALQDWYLSQGFIGHQAC-ALIAQHWLVDKACSLAGEDAIRN 163 (862) T ss_pred hhhhhhhhhhhcchhhhhhccccc----cccccccc--hhccccccccCcccHHHH-HHHHhCchhhhhhhhhhHHHhhC Confidence 333221 2111110000 00000000 0001111111 111111 23446888999999999999998 Q ss_pred ceeeecchh---------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEec---c-------------cCCceeEEE Q lcl|Aclame:pro 71 KINAEKKKN---------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWR---N-------------ANGADMKWE 125 (392) Q Consensus 71 p~~~~~~~~---------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r---~-------------~~G~~~~l~ 125 (392) .+++.-... ..+...=....-+..|.+.+ .+.-++|.+++++.- + ..|.+.++. T Consensus 164 g~~I~~~~d~~e~~~e~~~~ie~~~~rL~v~~~l~eai-r~~RLyGga~ililv~~~D~~~LsqPLn~e~I~kG~lkgl~ 242 (862) T protein:vir:99 164 GWHLKSLGEGEEIDEESLEKFKAIDVEFKVKENLIEFN-RFKNVFGIRVAIFVVDSEDPDYYEKPFNPDGITPGSYRGIS 242 (862) T ss_pred CceEeecCcccccCHHHHHHHHHHHHHhhHHHHHHHHH-HhcccccceEEEEEecCcCchhhhcCcCcccccccceeEEE Confidence 888763210 11111111111233333333 344468877776531 2 124557788 Q ss_pred Eeccccceeee----cCC-CceEEE---EEEecCCcceeeEEEecceEEEecCCCccc------cccCCCHHHHHHHHHH Q lcl|Aclame:pro 126 YLRPSQVNTYY----FEY-ENGMYY---NITFDDPKIEPILQAPQSDLIHMKLLSIDG------GKTGISPLYSLRRESK 191 (392) Q Consensus 126 ~l~~~~v~~~~----~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~vih~~~~~~~~------~~~G~s~l~~~~~~i~ 191 (392) +++|.++++.. +.+ ...-|+ .|.+. ...+..+.|+|+.+....+ .+.|.|.++.+...|. T Consensus 243 vlDp~w~~p~~v~~~~~Dp~sp~yGkP~~y~I~------g~~IH~SRliif~g~~vpd~lk~ay~f~G~SvLe~iyd~L~ 316 (862) T protein:vir:99 243 QIDPYWMMPMLTAESTADPSSQFFYEPEFWIIS------GQKYHRSHLIIARGPQPADILKPTYIFGGIPLVQRIYERVY 316 (862) T ss_pred EechhhhcccccccccccccccccCCceeeeec------CeeeccceeEEecCCCchhhhhccCCccCccHHHHHHHHHH Confidence 88888877532 111 111111 11121 1367888899887644322 2359999999999999 Q ss_pred HHHHHHHHHHHHHHccCCcceEEeeCCC--CCchHHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHH Q lcl|Aclame:pro 192 IQRASDRLTISSLNSSLNVPGVLTVKGG--GLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTD 269 (392) Q Consensus 192 ~~~~~~~~~~~~~~ng~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~ 269 (392) ....+......++.+.... +++++.. ...++...++........+| .++++++.+-+|++++.+..++ .+... T Consensus 317 ~~d~t~~saa~Ll~ka~l~--v~ktd~l~~l~~ed~l~~r~~~~~~~rdN-~Gi~liD~eEe~e~ls~slSGL--~dll~ 391 (862) T protein:vir:99 317 AAERTANEAPLLAMNKRTT--AIHTDTAKAIANEDKFIQRLMFWVRYRDN-HAVKVLGTDETMEQFDTSLADF--DAVIM 391 (862) T ss_pred HHHHHHHHHHHHHHHhccc--eeechhHhhhccHHHHHHHHHHHHhccCc-ceeEEecCCCceeEEecccCCh--HHHHH Confidence 9999988888888775533 4455432 22233333333333333444 4588899999999998877655 46777 Q ss_pred HHHHHHHHHhcccHHHc-CCccccc-ch-HHHHHHHHH-------HHHHHHHHHHHHHHHHHhh--hhhccchhhhhhcC Q lcl|Aclame:pro 270 WTSKQYAKVYGLPDSYI-GGQGDQQ-SS-IQQISGMYA-------SALNRYLRPAISELEYKLS--DHISVNMRPAIDPL 337 (392) Q Consensus 270 ~~~~~Ia~~fgVP~~~l-g~~~~~~-~~-~~~~~~~~~-------~~l~p~l~~i~~~l~~~l~--~~~~~d~~~~~~~~ 337 (392) ...+.||++.+||...| |.+..+. ++ .+..+.||. ..|.|.+..+...+..++. ..+.+.+..+..++ T Consensus 392 ~~~q~IAaas~IP~tiLfGqspaGlnATGE~D~~nYyD~I~s~QE~~L~P~LerL~~li~~~lg~~~d~~ieFnpL~~~s 471 (862) T protein:vir:99 392 GQYQLVASIAKTPATKLLGTAPKGFNSTGEFETISYHEELESIQEHVYMPFLQRHYLISRLSLGIQHEIDVVMEPVASMT 471 (862) T ss_pred HHHHHHHhhhCCCceeecccCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceEEeCCCCCCC Confidence 77889999999999965 5432332 22 234444433 4577888887777766654 34555555666666 Q ss_pred hHHHH-------HHHHHHHhCCccCHHHHHHHHHhCC---CCCcccccccCCCC---------CCCCCCCCCCC Q lcl|Aclame:pro 338 GDNYL-------STISTATRWGALAENQATFVLQEAG---YIPKDLPAPENTNK---------KTTGQSNEPVP 392 (392) Q Consensus 338 ~~~~~-------~~~~~~~~~g~~t~nE~R~~l~~~g---~~~~e~~~~~~~~~---------~~~gd~~~p~p 392 (392) .++++ +.+..++.+|+++++|+|+.|...+ +...+....+..+. ...|++..-.| T Consensus 472 ekEkAEi~kk~Aea~~~lv~sGvispdEvR~~L~~~~~~g~~~l~ded~E~d~~~~~e~~~~~e~~g~a~~~ap 545 (862) T protein:vir:99 472 AQQQADLNKTKAEGGKVLIDGGVISPDEERNRIRDDKRSGYNRLTKEDAEETPGASPENLAAYQKAGAAQETAS 545 (862) T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcCCCCCCcccccccCCCCcccccccccCCccccccc Confidence 66655 4467889999999999999986443 22211111111010 11111111112 No 110 >protein:vir:104338 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398967;genbank:gi:81343951;genbank:GeneID:3778870 Probab=99.77 E-value=1.5e-18 Score=118.27 Aligned_cols=365 Identities=13% Similarity=0.059 Sum_probs=197.4 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchhh Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKNQ 80 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~ 80 (392) -+-|+-|.+-.-.... . .+....+.....+ ...+.+++.+.++|+.+|.++-+-.+++...+.. T Consensus 3 ~~D~~~n~~~gg~~~~---~------------~~~~~~~~~~~~l-~a~Y~~~~l~~~~Vd~~aed~~r~g~~i~~~~~~ 66 (422) T protein:vir:10 3 KTDSYANIFLGGSDGS---E------------IYGSLQNQAPTIL-ASLYADNALVRRIIDTIPETALAAGFHIDGIDDE 66 (422) T ss_pred cchhhHHHHcCCCCCc---c------------ccCcccccCHHHH-HHHHHhChhhHHHHhhhhHHHhcCCccccCCCHH Confidence 1223333332100000 0 0000000000111 1224457889999999999998877777544332 Q ss_pred hhc-ccCCccCCHHHHHHHHHHHHHHhCCeeEEEec-c---------cCCceeEEEEeccccceeeecC-------CCce Q lcl|Aclame:pro 81 GII-DNPSTNANKHGFWQSMFAQLLLGGEAFAYRWR-N---------ANGADMKWEYLRPSQVNTYYFE-------YENG 142 (392) Q Consensus 81 ~~~-~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r-~---------~~G~~~~l~~l~~~~v~~~~~~-------~~~~ 142 (392) ..+ .+=+...-+ +-+...+.+..++|.+++++.- + ..|....+.++++.+|++.... ++.. T Consensus 67 ~~~~~~~~~l~~~-~~l~~a~~~~rl~G~a~i~i~v~d~~~~~~Pl~~~g~~~~l~v~d~~~i~~~~~~~dp~s~~fg~P 145 (422) T protein:vir:10 67 PAFWSRWDDLEMT-QNINDAWSWARLFGGAAIVAIVKDNRALTSPVREGAELETVRVYDRTQVKVQTREENPRNARFGEP 145 (422) T ss_pred HHHHHHHHHhhHH-HHHHHHHHhhccccceEEEEEecCCCCccccccccCceeeEEeeccccccchhcccCccccccCcc Confidence 211 111112223 3334444455688999988763 2 2456778899999988765321 2222 Q ss_pred EEEEEEecCCcceeeEEEecceEEEecCCC------ccccccCCCHHHH-HHHHHHHHHHHHHHHHHHHHccCCcceEEe Q lcl|Aclame:pro 143 MYYNITFDDPKIEPILQAPQSDLIHMKLLS------IDGGKTGISPLYS-LRRESKIQRASDRLTISSLNSSLNVPGVLT 215 (392) Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~vih~~~~~------~~~~~~G~s~l~~-~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~ 215 (392) .+|.+ .....+..+.+..+.++|+.+.. +.....|.|++.. +.+.+.....+......++.+.... +++ T Consensus 146 ~~y~v--~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~~~~~~--v~~ 221 (422) T protein:vir:10 146 LTYRI--TTNESDMFYDVHYSRIHIIDGERIPNVMRRQNDGWGRSVLSSDILDSIKDYTNCERLATQLLKRKQQA--VWK 221 (422) T ss_pred eEEEE--ecCCCCcceeeccceeEEeCCCCchhhhcccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccc Confidence 33333 22223344789999999996542 3344579999986 6788888888888777776665433 344 Q ss_pred eCC------CCCchHHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCc Q lcl|Aclame:pro 216 VKG------GGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQ 289 (392) Q Consensus 216 ~~~------~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~ 289 (392) ++. ......+.+++.........+.+.+++.+++.+|++++.+..+ +.+......++||++.|||...|.+. T Consensus 222 ~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e~~~~~lsg--l~~~~~~~~~~iaaa~~IP~t~L~G~ 299 (422) T protein:vir:10 222 AKGLAELCDDSEGFGAARLRLAQVDNNSGVGQAIGIDAESEEYSVLNSDIGG--IDAFLDKKFDRIVALSGIHEIILKNK 299 (422) T ss_pred chhHHHhcCCccchHHHHHHHHHHHHhcCCccceeEecCCcceEEEecccCC--hHHHHHHHHHHHHhhhCCCeeeeccC Confidence 443 1111223333444444444555566666777899999888775 45888888999999999999977443 Q ss_pred cc-cc-chH-HHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhhccchhhhhhcChHH-------HHHHHHHHHhCC Q lcl|Aclame:pro 290 GD-QQ-SSI-QQISGMYA-------SALNRYLRPAISELEYKLSDHISVNMRPAIDPLGDN-------YLSTISTATRWG 352 (392) Q Consensus 290 ~~-~~-~~~-~~~~~~~~-------~~l~p~l~~i~~~l~~~l~~~~~~d~~~~~~~~~~~-------~~~~~~~~~~~g 352 (392) .. +- ++. +..+.||. ..+.|.+..+-..+-. ...+.+.+..+..++.++ .++.+..+++.| T Consensus 300 s~~Glnatgd~d~~~yyd~i~~~Qe~~l~p~l~~l~~~i~~--s~~~~~~f~pL~~~sekekaei~~~~a~a~~~~~~~g 377 (422) T protein:vir:10 300 NVGGVSSSQNTALETFHKLVDRKRNAELLPILEFLIPFIVN--AEEWSVEFNPLAQESSKDKAEILEKNVNSIAALIAAG 377 (422) T ss_pred CcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCcEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcC Confidence 22 22 222 23334433 2344444443333321 123444444555555554 445678889999 Q ss_pred ccCHHHHHHHHHh----CCCCCcccccccCCCCCCCCCC--CCCCC Q lcl|Aclame:pro 353 ALAENQATFVLQE----AGYIPKDLPAPENTNKKTTGQS--NEPVP 392 (392) Q Consensus 353 ~~t~nE~R~~l~~----~g~~~~e~~~~~~~~~~~~gd~--~~p~p 392 (392) +++++|+|+.|.. .|..++..+. +.+....++. ++|.. T Consensus 378 ~i~~~e~r~~L~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 421 (422) T protein:vir:10 378 AMDIDEARDTLRTIAPEVKINDGSVET--EVTISETSNDPLEVPTD 421 (422) T ss_pred CCCHHHHHHHhhhhcccccCCCCCCcc--ccchhhcCCCCCCCCCC Confidence 9999999998854 2322221111 1111111111 11111 No 111 >protein:vir:107662 Length: 427 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003893;genbank:gi:45686310;genbank:GeneID:2773002 Probab=99.76 E-value=4.9e-19 Score=120.97 Aligned_cols=360 Identities=11% Similarity=0.029 Sum_probs=199.1 Q ss_pred chhh------hhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeec Q lcl|Aclame:pro 3 LPIL------NFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEK 76 (392) Q Consensus 3 Mg~~------n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~ 76 (392) |++| |++....... .+ ..+.+..+..+. ..+.+++.+.++|+.+|.++-+-.+++.. T Consensus 1 ~~~~~~d~~~~~~~~~~~~~-------~~---------~~~~~~~~~~l~-a~Y~~~~l~~~~Vd~~aed~~r~g~~i~g 63 (427) T protein:vir:10 1 MKIVKHDGYNDIFNGGADGS-------PK---------PFFMSDASYHVG-SFYNDNATAKRIVDVIPEEMVTAGFKMSG 63 (427) T ss_pred CCccccchHHHHhhcCCCCc-------cc---------CccccCchHHHH-HHHHcCchhhhhhccchHHhhcCCccccC Confidence 5555 3332210000 00 001111111111 22445788999999999999888887764 Q ss_pred chhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEe-c---------ccCCceeEEEEeccccceeeecCC------- Q lcl|Aclame:pro 77 KKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRW-R---------NANGADMKWEYLRPSQVNTYYFEY------- 139 (392) Q Consensus 77 ~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~-r---------~~~G~~~~l~~l~~~~v~~~~~~~------- 139 (392) .+....++.--....-.+-++..+.+.-++|.+++++. + ...|.+..+.++++.++++..... T Consensus 64 ~~~~~~~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~l~~p~~~~g~l~~l~v~d~~~~~~~~~~~dp~s~~f 143 (427) T protein:vir:10 64 VKDEKEFKSLWDSYKLDSSLVDLLCWARLYGGAAMVAIIKDNRMLTSQAKPGAKLEGVRVYDRFAITVEKRVTNARSPRY 143 (427) T ss_pred ccHHHHHHHHHHHhhHHHHHHHHHHhccccceeEEEEEecCCCccccccCCCcceeEEEEechhcccccccccCcccccc Confidence 33222221111111223334445555568999998874 2 235678899999998887754321 Q ss_pred CceEEEEEEecCCcceeeEEEecceEEEecCCC------ccccccCCCHHH-HHHHHHHHHHHHHHHHHHHHHccCCcce Q lcl|Aclame:pro 140 ENGMYYNITFDDPKIEPILQAPQSDLIHMKLLS------IDGGKTGISPLY-SLRRESKIQRASDRLTISSLNSSLNVPG 212 (392) Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~------~~~~~~G~s~l~-~~~~~i~~~~~~~~~~~~~~~ng~~~~~ 212 (392) +...+|. +.+......+.+..+.++|+.+.. +.....|.|++. .+.+.+.....+......++.+.... T Consensus 144 g~P~~y~--v~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~k~~~~-- 219 (427) T protein:vir:10 144 GEPEIYK--VSPGDNMQPYLIHHSRVFIADGERVAQQARKQNQGWGASVLNKSLIDAICDYDYCESLATQILRRKQQA-- 219 (427) T ss_pred CcceEEE--EecCCCCcceEEccccEEEecCCCchhhhcccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccc-- Confidence 2222232 333333345789999999996542 234457999986 56787888877777777766554333 Q ss_pred EEeeCC------CCCchHHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHc Q lcl|Aclame:pro 213 VLTVKG------GGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYI 286 (392) Q Consensus 213 i~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~l 286 (392) ++++++ ....+.+.+++.........+.+.+++..++-+|++++.+...+ .+......++||++.+||...| T Consensus 220 v~k~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e~~~~~lsgl--~~~~~~~~~~iaaa~~IP~t~L 297 (427) T protein:vir:10 220 VWKVKGLAEMCDDDDAQYAARLRLAQVDDNSGVGRAIGIDAETEEYDVLNSDISGV--PEFLSSKMDRIVSLSGIHEIII 297 (427) T ss_pred cccchhHHHHhcCccchHHHHHHHHHHHHhcCcccceeeecCCCceeEEecccCCh--HHHHHHHHHHHHhhhCCCeeee Confidence 344432 11112233333333334445556677777778999988877654 5778888899999999999977 Q ss_pred CCc-cccc-chH-HHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhhccchhhhhhcChHHH-------HHHHHHHH Q lcl|Aclame:pro 287 GGQ-GDQQ-SSI-QQISGMYA-------SALNRYLRPAISELEYKLSDHISVNMRPAIDPLGDNY-------LSTISTAT 349 (392) Q Consensus 287 g~~-~~~~-~~~-~~~~~~~~-------~~l~p~l~~i~~~l~~~l~~~~~~d~~~~~~~~~~~~-------~~~~~~~~ 349 (392) -+. ..+- ++. +..+.||. ..+.|.+..+-+-+-. ...+.+.+..+..++.+++ ++.+..++ T Consensus 298 ~G~sp~Glnstgd~D~~nyyd~i~~~Qe~~l~p~l~~l~~~i~~--s~~~~~~f~pL~~~s~kEkaei~~~~a~a~~~~~ 375 (427) T protein:vir:10 298 KNKNVGGVSASQNTALETFYKLVDRKREEDYRPLLEFLLPFIVD--EEEWSIEFEPLSVPSKKEESEITKNNVESVTKAI 375 (427) T ss_pred ccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCcEEEeCCCCCCCHHHHHHHHHHHHHHHHHHH Confidence 443 2222 222 23444433 3344444433333221 1234444445555555444 45678889 Q ss_pred hCCccCHHHHHHHHHh----CCCCCcccccccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 350 RWGALAENQATFVLQE----AGYIPKDLPAPENTNKKTTGQSNEPVP 392 (392) Q Consensus 350 ~~g~~t~nE~R~~l~~----~g~~~~e~~~~~~~~~~~~gd~~~p~p 392 (392) ++|+++++|+|+.|.. .|..+.+....++ .+++.++.| T Consensus 376 ~~gvi~~~e~r~~L~~~~~~~~~~~~~~~~~e~-----~~~~~e~~p 417 (427) T protein:vir:10 376 TEQIIDLEEARDTLRSIAPEFKLKDGNNINIRE-----PEETTEPEP 417 (427) T ss_pred hcCCCCHHHHHHHHHhhhccccCCCCccccccc-----cchhcCCCC Confidence 9999999999998853 3333322111111 111111111 No 112 >protein:vir:94049 Length: 532 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453629;genbank:gi:84662665;genbank:GeneID:5142559 Probab=99.74 E-value=1.2e-17 Score=113.36 Aligned_cols=380 Identities=12% Similarity=0.022 Sum_probs=193.2 Q ss_pred Ccchhhhh-hcccc-ccccccccccccc------Ccchh-hhhhhcc--CCCCcccchhhhhcchHHHHHHHHHHHhhhh Q lcl|Aclame:pro 1 MILPILNF-INQTN-DPPEAGSVQSYFP------DGNDA-QIMESLL--GDNNEWVSARAALRNSDLFSIILQLSSDLAI 69 (392) Q Consensus 1 m~Mg~~n~-~~~~~-~~~~~~~~~~~~~------~~~~~-~~~~~~~--~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~ 69 (392) -++-.-++ +.... .+..+.+..+-+. ...+. ....+.. ...+..+. ..+-+++.++.+|+.+|.++-+ T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~-a~Y~~~~l~r~~Vd~~aed~~r 110 (532) T protein:vir:94 32 SLGLATAHEIDPTAYSPYERNAAQNAMAMDYGLQTGRNGRNALSFVEATSWPGFPTL-ALLAQLPEYRTMHETPADECVR 110 (532) T ss_pred hhhhhhhhhhcccccccccccccccccccccccCcccccccccccccccccchHHHH-HHHHcCchhhhhhccchHHHhh Confidence 00000000 00000 0000000000000 00000 0000000 01111111 1233578899999999999988 Q ss_pred Cceeeecchhh-------hhcc-cCCccCCHHHHHHHHHHHHHHhCCeeEEEecc-------------------cCCcee Q lcl|Aclame:pro 70 VKINAEKKKNQ-------GIID-NPSTNANKHGFWQSMFAQLLLGGEAFAYRWRN-------------------ANGADM 122 (392) Q Consensus 70 lp~~~~~~~~~-------~~~~-~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~-------------------~~G~~~ 122 (392) -.+++...... ..++ .-....-+..| ...+.+..+||.+++++.-. ..|... T Consensus 111 ~~~~i~~~~~~~~~~~~~~~i~~~~~~l~v~~~l-~~a~~~~rlyG~a~i~i~v~~~~~~~~~~~p~~l~~~~I~~g~~~ 189 (532) T protein:vir:94 111 AWGKITCSSKDELAADKATRITQKLEQYNVRTLV-RTVVIHDQAYGGAHVFPHLKMDGDSVPADAPLLLSPSFVQRGCLI 189 (532) T ss_pred CCceEeeCCccccchHHHHHHHHHHHhhhHHHHH-HHHHHhhhcccceEEEEEeccCCccccccccccccccccccceee Confidence 88877542111 1111 11112222333 33444455899998876432 223456 Q ss_pred EEEEeccccceeeecCCCceE---EE---EEEecCCcceeeEEEecceEEEecCCCcc------ccccCCCHHHHHHHHH Q lcl|Aclame:pro 123 KWEYLRPSQVNTYYFEYENGM---YY---NITFDDPKIEPILQAPQSDLIHMKLLSID------GGKTGISPLYSLRRES 190 (392) Q Consensus 123 ~l~~l~~~~v~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~vih~~~~~~~------~~~~G~s~l~~~~~~i 190 (392) ++.+++|.+|++......... |+ .|... ....+..+.|+|+.+.... ..+.|.|.++.+...| T Consensus 190 ~l~vld~~~v~p~~~~~~dp~sp~fg~P~~y~v~-----~g~~iH~SRli~f~g~~~p~~~~~~~~~~G~Svlq~~~~~l 264 (532) T protein:vir:94 190 GFATIEPMWLSPNAYNATDPTLPSFYKPDSWIAT-----SGKKIHSSRIHTVVGRPVGDMLKAAYSFRGVSISQLAMPYV 264 (532) T ss_pred EEEeechheecccccccccccccccCCceeEEEc-----cCeeeccceEEEecCCCchhhhccccccccccHHHHHHHHH Confidence 888999998887543211111 11 11111 1246899999999764322 2236999999999999 Q ss_pred HHHHHHHHHHHHHHHccCCcceEEeeCC--CCCc--hHHHHHHHHHHHhccccCCceeeccC-CceEEeccCChhhHHHH Q lcl|Aclame:pro 191 KIQRASDRLTISSLNSSLNVPGVLTVKG--GGLL--SDKDKASRSRSFMKRSRSGGPVVLDD-LEEFTALEIKSNVAQLL 265 (392) Q Consensus 191 ~~~~~~~~~~~~~~~ng~~~~~i~~~~~--~~~~--~~~~~~~~~~~~~~~~~~g~~~vl~~-g~~~~~l~~~~~d~~~~ 265 (392) .....+......+....... +++++. .... .++..+++.......+| .+++++++ +.+|++++.+..++ . T Consensus 265 ~~~~~t~~~~~~l~~~~~~~--v~k~~~a~~ls~~~~~~~~~r~~~~~~~~~n-~g~~~id~~~e~~e~~~~~lsgl--~ 339 (532) T protein:vir:94 265 DNWLRTRQSVSDTVKQFSMT--NLATDMAQLLAPGGAQSLDARLQLFNLYRDN-RNIGALDKGTEEIQQTNTPLSGL--D 339 (532) T ss_pred HHHHHHHHHHHHHHHhcCCc--eeeechHHhhcchhHHHHHHHHHHHHhhcCC-ccceEEcCCCceeEEEecccCCH--H Confidence 99888888777766654433 234331 1111 12222233322333444 34666764 57899888776654 5 Q ss_pred HHHHHHHHHHHHHhcccHHHc-CCccccc-ch-HHHHHHHHH-------HHHHHHHHHHHHHHHHHhh----hhhccchh Q lcl|Aclame:pro 266 SQTDWTSKQYAKVYGLPDSYI-GGQGDQQ-SS-IQQISGMYA-------SALNRYLRPAISELEYKLS----DHISVNMR 331 (392) Q Consensus 266 e~~~~~~~~Ia~~fgVP~~~l-g~~~~~~-~~-~~~~~~~~~-------~~l~p~l~~i~~~l~~~l~----~~~~~d~~ 331 (392) +......+.||++.|||...| |.+..+- ++ .+..+.||. ..+.|.++.+.+.|.+..+ +++.+.+. T Consensus 340 ~~l~~~~~~iAaa~~IP~t~LfG~sp~GlnstGe~D~~~yyd~I~s~Qe~~l~p~le~l~~~l~~s~~g~~~~d~~~~f~ 419 (532) T protein:vir:94 340 SLQAQSQEQMAAVSHIPLVKLLGITPNGLNASSDGEIRVWYDFIAGYQATNLTPLMEWIIDLIQLSEYGQIDPGLAWEWS 419 (532) T ss_pred HHHHHHHHHHHhHhCCCeeeeecCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEeC Confidence 778888889999999999966 5432222 22 223333332 4466776666666654432 24555555 Q ss_pred hhhhcChHHHH-------HHHHHHHhCCccCHHHHHHHHHhCCCC---Cc-----cccccc---------CCCCC-CCCC Q lcl|Aclame:pro 332 PAIDPLGDNYL-------STISTATRWGALAENQATFVLQEAGYI---PK-----DLPAPE---------NTNKK-TTGQ 386 (392) Q Consensus 332 ~~~~~~~~~~~-------~~~~~~~~~g~~t~nE~R~~l~~~g~~---~~-----e~~~~~---------~~~~~-~~gd 386 (392) .+..++.++++ +.+..++..|+++++|+|+.|...+.. .+ ++...+ +.++. .+.. T Consensus 420 pL~~~s~kEkAei~~~~a~a~~~~~~~Gvi~~~Evr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (532) T protein:vir:94 420 PLMELDDKELAEVRQLNASTDSTLMELGVIDAKMVQQRLAADPTSGYAGALGERDELDDVEEIAKQLMAAALNPPATAPQ 499 (532) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcCCccccccccccccccccccchhhhhcccccCCCCCCCC Confidence 56666666554 456788999999999999998754422 11 110000 01111 1111 Q ss_pred CCCCCC Q lcl|Aclame:pro 387 SNEPVP 392 (392) Q Consensus 387 ~~~p~p 392 (392) ..+|.| T Consensus 500 ~~~~~~ 505 (532) T protein:vir:94 500 TPNPQP 505 (532) T ss_pred CCCCCC Confidence 122333 No 113 >protein:vir:79538 Length: 502 # NCBI annotation: putative portal protein # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272517;genbank:gi:148609386;genbank:GeneID:5204374 Probab=99.73 E-value=3.8e-17 Score=110.62 Aligned_cols=389 Identities=12% Similarity=0.071 Sum_probs=212.6 Q ss_pred chhhhhhcccccc-------cccccccccccCcchhhhhhhccCCC--Ccc----------cchhhhhcchHHHHHHHHH Q lcl|Aclame:pro 3 LPILNFINQTNDP-------PEAGSVQSYFPDGNDAQIMESLLGDN--NEW----------VSARAALRNSDLFSIILQL 63 (392) Q Consensus 3 Mg~~n~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----------~~~~~al~~~~v~~~i~~i 63 (392) |+|+|.+.....+ ..+...+.+.. ........++.... ... -+.+-+..+|.+.+||+.+ T Consensus 1 mn~~dr~i~~~sP~~~~~R~~ar~~~~~y~a-a~~~r~~~~~~~~~s~~~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~ 79 (502) T protein:vir:79 1 MAILDDVIGVFSPGWKAARLRSRAVIQAYEA-VKTTRTHKARRENRTADQLSQYGAVSLREQARYLDNNHDLVIGVFDKL 79 (502) T ss_pred CchHhhHHhhcChHHHHHHHhhHHHHhhccc-cCcccccCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH Confidence 9999843222111 00011111100 00011111111110 000 1122333578899999977 Q ss_pred HHhh-hh--Cceeee--cch--------------hhhhccc--CCccCCHHHHHHHHHHHHHHhCCeeEEEeccc----- Q lcl|Aclame:pro 64 SSDL-AI--VKINAE--KKK--------------NQGIIDN--PSTNANKHGFWQSMFAQLLLGGEAFAYRWRNA----- 117 (392) Q Consensus 64 a~~i-a~--lp~~~~--~~~--------------~~~~~~~--PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~----- 117 (392) .+.+ ++ +.+... ..+ ...+.++ .+..++.+.+...++..++..|++|+.+++.. T Consensus 80 ~~nvVG~ggi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~~~~~~~~~~~ 159 (502) T protein:vir:79 80 EERVVGKNGIIVEPHPVLRNGAIARDLAAEIRTRWSEWSVSPEVTGQFTRPMLERLMLRTWLRDGEVFAQMVSGRINSLT 159 (502) T ss_pred HHhhccCCceeeeeccCCCChhHHHHHHHHHHHHHHHhhcCcCccccCCHHHHHHHHHHHHHhCCceEEEEeecccCccC Confidence 7555 33 222111 100 1112233 33457899999999999999999999986543 Q ss_pred --CCceeEEEEecccccee------------eecCCCceEEEEEEecC---CcceeeEEEecceEEEecCCCccccccCC Q lcl|Aclame:pro 118 --NGADMKWEYLRPSQVNT------------YYFEYENGMYYNITFDD---PKIEPILQAPQSDLIHMKLLSIDGGKTGI 180 (392) Q Consensus 118 --~G~~~~l~~l~~~~v~~------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~vih~~~~~~~~~~~G~ 180 (392) .+.+..|..|+|+++.. ..|..|..+.|.+.-.. ........+++++|+|+......+...|+ T Consensus 160 ~g~~~~l~lq~iepd~l~~~~~~~~~i~~GVe~d~~Gr~~aY~i~~~hPgd~~~~~~~rvpA~~vlH~f~~~r~gQ~RGi 239 (502) T protein:vir:79 160 PSAGVHFWLEALEPDFIPMTSDESNRLNQGVFVDDWGRPEKYLVYKSRPVSGRQMETKEVDAERMLHLKFVRRLHQMRGT 239 (502) T ss_pred CCcccceEEEEecchhcCCCCCCCCeeEeeeEECCCCceEEEEEeecCCCCCcccceeEechhheEEeecccCCccccCC Confidence 23467899999998863 34445555555443221 12234578999999999988888889999 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCcee-eccCCceEEeccCCh Q lcl|Aclame:pro 181 SPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPV-VLDDLEEFTALEIKS 259 (392) Q Consensus 181 s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-vl~~g~~~~~l~~~~ 259 (392) |.+..+...+........+...-.+=.+...++++.+.+..................-..|.++ .|..|.+++.++.+- T Consensus 240 s~lapvl~~l~~l~~~~dael~~a~i~A~~~~fi~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~~L~pGe~i~~~~p~~ 319 (502) T protein:vir:79 240 SLLSGVLIRLSALKEYEDSELTAARIAAALGMYIRKGDGQSYEPDGNGSKENERELTIQPGIIYDDLKPGEEIGMVKSDR 319 (502) T ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCcccccccCCCCCccccccccCCccccccCCCceeeeeCCCC Confidence 9999998888877776666666555666677888865432221100000000000111245554 589999999988775 Q ss_pred hhHHHHHHHHHHHHHHHHHhcccHHHcCCccc-ccchH-HHHHHH------HH-HHHHHHHHHHHHH-HHHHhhh-hhc- Q lcl|Aclame:pro 260 NVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGD-QQSSI-QQISGM------YA-SALNRYLRPAISE-LEYKLSD-HIS- 327 (392) Q Consensus 260 ~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~-~~~~~-~~~~~~------~~-~~l~p~l~~i~~~-l~~~l~~-~~~- 327 (392) ....|.+..+...+.||+.+|||.+.|.+..+ ++++. .....+ .+ .++..++++|-+. |+..+.. .+. T Consensus 320 p~~~~~~f~~~~lr~iaaglGi~ye~lt~D~s~nySs~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~~l~~a~l~G~i~~ 399 (502) T protein:vir:79 320 PNPNLETFRNGQLRAVAAGSRLSFSSTARNYNGTYSAQRQELVESTDGYLILQDWFIGAVTRPMYRAWLKQAVASGVIRL 399 (502) T ss_pred CCCCHHHHHHHHHHHHHhhcCCCHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC Confidence 56678899999999999999999998854322 22221 111111 11 2333455554433 3333321 111 Q ss_pred ---cchhhhhh----------cChHHHHHHHHHHHhCCccCHHHHHHHH------------------HhCCCCCcccccc Q lcl|Aclame:pro 328 ---VNMRPAID----------PLGDNYLSTISTATRWGALAENQATFVL------------------QEAGYIPKDLPAP 376 (392) Q Consensus 328 ---~d~~~~~~----------~~~~~~~~~~~~~~~~g~~t~nE~R~~l------------------~~~g~~~~e~~~~ 376 (392) .+.....+ .|+..-......++++|+.|+-++-... .+.|+..+..|.. T Consensus 400 p~~~~~~~~~~~~W~~p~~~~iDP~Ke~~a~~~~i~~Gl~t~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~ 479 (502) T protein:vir:79 400 PRDLDRSSLYTAVYSGPVMPWIDPVKEAEAWKIQIRGGAATESDWVRAGGRNPDDVKRRRKAEIDENRKLDLVFDTDPAS 479 (502) T ss_pred CCCCCchhhcceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCCCCC Confidence 11111111 3666667788899999999998753321 1233332222332 Q ss_pred cCCCCCCCCCCCCCCC Q lcl|Aclame:pro 377 ENTNKKTTGQSNEPVP 392 (392) Q Consensus 377 ~~~~~~~~gd~~~p~p 392 (392) ...+....++..+|.| T Consensus 480 ~~~~~~~~~~~~e~~~ 495 (502) T protein:vir:79 480 DKGGSSAATKRQEPQH 495 (502) T ss_pred CCCCCCCCCCCCCCCC Confidence 2222333344444555 No 114 >protein:vir:80040 Length: 461 # NCBI annotation: gp3 # Family: family:all:297 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468707;genbank:gi:157325287;genbank:GeneID:5601731 Probab=99.73 E-value=3.7e-18 Score=116.17 Aligned_cols=375 Identities=14% Similarity=0.099 Sum_probs=199.3 Q ss_pred chhhhhhcccccccccccccccccC---cchhh--hhhhccCCCCcccch----hhhhcchHHHHHHHHHHHhhhhCcee Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPD---GNDAQ--IMESLLGDNNEWVSA----RAALRNSDLFSIILQLSSDLAIVKIN 73 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~----~~al~~~~v~~~i~~ia~~ia~lp~~ 73 (392) |+=-|=-+.+.....+.+..+.... +.... .+..... ...++. ..+.+++.+..+|+.+|..+-+-.++ T Consensus 1 ~~~~~~a~~~~~~~~a~~~~~~~~~~g~~~~~d~~~~~~~~~--~~~~~~~~l~~lY~~~~l~r~iVd~~a~d~~r~g~~ 78 (461) T protein:vir:80 1 MYSIDKAKQAKIDSKIVNRNDFMVGHGKANSRDKLTRQTPGN--GQKLDLKACENLYASNSIAMNIVDIISEDMVRAGWS 78 (461) T ss_pred CccchhhhhhhhhhhhhhhhHHHhhcCCcchhhhhhccccCc--ccccCHHHHHHHHHhCCccchhhccchHHhhcCCee Confidence 4422211111111111111111110 01111 1111111 111221 22335677899999999999777776 Q ss_pred eecchhh---hhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEec-ccC------------CceeEE---EEecccccee Q lcl|Aclame:pro 74 AEKKKNQ---GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWR-NAN------------GADMKW---EYLRPSQVNT 134 (392) Q Consensus 74 ~~~~~~~---~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r-~~~------------G~~~~l---~~l~~~~v~~ 134 (392) +.-.+.+ .+...=+....+..| ...+.+..++|.+++++.- +.+ +.+.++ .|+.+..+.+ T Consensus 79 i~~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~rl~G~a~i~i~v~d~~~~~~~~~~pl~~~~~~~~~~l~~~~~~~i~~ 157 (461) T protein:vir:80 79 LKTDNKEMKKNIESKWRKLKTKDRF-QKLYADKRLYGDGFLSIGVVSSNREQADLSTAIDPKTIKSIPYINTFNTQKVTQ 157 (461) T ss_pred eecCCHHHHHHHHHHHHHhhHHHHH-HHHHHhhcccccEEEEEEeecCCccccCccCCcccccccceeEEEeccccccch Confidence 6433221 111111111233344 4445556689999998852 211 122233 3333333322 Q ss_pred eec-------CCCceEEEEEEe---------cCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 135 YYF-------EYENGMYYNITF---------DDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDR 198 (392) Q Consensus 135 ~~~-------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~ 198 (392) ... .++...+|.+.. .+......+.+....|+|+.+....+...|.|.++.+.+.+.....+.. T Consensus 158 ~~~~~dp~sp~fg~P~~y~i~~~~~~~~~~~~~~~~~~~~~iH~SRii~~~~~~~~~~~~G~S~le~~~~~l~~~~~~~~ 237 (461) T protein:vir:80 158 LYLNQDMFSEHFGEVEFFEVNRVSQLGEEILSGTTASTSEQIHRSRIIHEQGLRFEGETKGRSIFESLYDIITVMDTSLW 237 (461) T ss_pred hhhcccCcCcccccceEEEEeccccccccccccccCccceEEccccEEEecCCCCCccccCcchHHHHHHHHHHHHHHHH Confidence 111 122222232221 1112334578999999999988777778899999999999999988888 Q ss_pred HHHHHHHccCCcceEEeeCCCCC--ch-HHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 199 LTISSLNSSLNVPGVLTVKGGGL--LS-DKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQY 275 (392) Q Consensus 199 ~~~~~~~ng~~~~~i~~~~~~~~--~~-~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~I 275 (392) ....+..+...+ +++++.... .+ .....++.+.+ .+..++++++.+-+|++++.+..++ .+..+.....| T Consensus 238 ~~~~l~~~~~~~--v~k~~~l~~~~~~~~~~~~~~~~~~---~~~~g~~~~d~~e~~e~~~~~lsgl--~~~l~~~~~~i 310 (461) T protein:vir:80 238 SVGQILYDFAFK--VYKTDDIDALNKDDKANLTAMLDFM---FRTEALAIIKGDEQLTKESTNVSGM--KDLLDYGWDYL 310 (461) T ss_pred HHHHHHHHhCCC--ceecchHHhhhchHHHHHHHHHHHh---cCCceEEEEcCCcceEEEecCcCCH--HHHHHHHHHHH Confidence 888877765443 456553211 11 11122222222 2234578889888999999877654 58888899999 Q ss_pred HHHhcccHHHcCCcccc-cch-HHHHHHHHH-------HHHHHHHHHHHHHHHHHhhh----------hhccchhhhhhc Q lcl|Aclame:pro 276 AKVYGLPDSYIGGQGDQ-QSS-IQQISGMYA-------SALNRYLRPAISELEYKLSD----------HISVNMRPAIDP 336 (392) Q Consensus 276 a~~fgVP~~~lg~~~~~-~~~-~~~~~~~~~-------~~l~p~l~~i~~~l~~~l~~----------~~~~d~~~~~~~ 336 (392) |++.+||...|.+...+ .++ .++.+.||. ..+.|.++.+.+.+-+.... .+.+.+..+..+ T Consensus 311 aa~s~iP~t~L~G~s~g~~asge~D~~~yyd~i~~~qe~~l~p~le~l~~~i~~s~~~~~~~~~p~~~~~~i~f~~L~~~ 390 (461) T protein:vir:80 311 AGAVRMPKTVLKGQEAGTLTGAQYDVMNYYARVSSIQENRLRPQLEYLTRLLMWASDDCGPSIDPDSFEWAIEFNPLWNL 390 (461) T ss_pred hhhhcCCeeeeecccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccceEEEeCCCCCC Confidence 99999999877543222 233 223443332 44666666666666543321 344445556666 Q ss_pred ChHHHH-------HHHHHHHhCCccCHHHHHHHHH-hCCCCCc-----ccccccCC-------CCCCCCCC Q lcl|Aclame:pro 337 LGDNYL-------STISTATRWGALAENQATFVLQ-EAGYIPK-----DLPAPENT-------NKKTTGQS 387 (392) Q Consensus 337 ~~~~~~-------~~~~~~~~~g~~t~nE~R~~l~-~~g~~~~-----e~~~~~~~-------~~~~~gd~ 387 (392) +.++++ +.+..++++|+++++|+|+.|. +.|..++ ..++.++. +..+.||. T Consensus 391 s~kekAe~~~~~a~a~~~~~~~g~is~~e~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g 461 (461) T protein:vir:80 391 DSKTDAEVRKLTAEADQIYIVNGVLDPDEVKETRFGRFGLENSSKFSGDSAEIDKLAKLVYDAYAKKNADG 461 (461) T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCccCCCCCchhhhhhhhccccccccCCCC Confidence 666554 4578889999999999999874 3343332 22222221 11112222 No 115 >protein:vir:96068 Length: 765 # NCBI annotation: conserved hypothetical protein ORF017 # Family: family:all:297 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294434;genbank:gi:149408331;genbank:GeneID:5237187 Probab=99.73 E-value=6.1e-18 Score=114.96 Aligned_cols=380 Identities=11% Similarity=0.000 Sum_probs=199.1 Q ss_pred Ccchhhhhhcccccccccccccccc-cCc---chh-------hhhhhcc-CCC------------------Ccccchhhh Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYF-PDG---NDA-------QIMESLL-GDN------------------NEWVSARAA 50 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~-~~~---~~~-------~~~~~~~-~~~------------------~~~~~~~~a 50 (392) -++.+++|.......+.......+- +.. .++ +.+.... +.+ +..+. ..+ T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gyql~-alY 117 (765) T protein:vir:96 39 KLGKIRGWNVEPEKAPVIRSVKDFLEPGLSVAMDSAYGDGPTPAAKAAAGGQNPYVVPTMLQDWYNSQGFIGYQAC-AII 117 (765) T ss_pred hHHHHhhcccccccCCCCCCCCcccCcccceeccccccccccchHHHhhhccCccchhhHHHhhhcccCCccHHHH-HHH Confidence 1223445544433333222221111 000 000 0000000 000 00011 124 Q ss_pred hcchHHHHHHHHHHHhhhhCceeeecchhh------hhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEec---c----- Q lcl|Aclame:pro 51 LRNSDLFSIILQLSSDLAIVKINAEKKKNQ------GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWR---N----- 116 (392) Q Consensus 51 l~~~~v~~~i~~ia~~ia~lp~~~~~~~~~------~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r---~----- 116 (392) .+++.+..+|+.+|.+.-+-.+.+.-.... ..++.--....-.+-+...+.+.-+||.+|+++.- + T Consensus 118 ~~~~l~rkiVd~pAeDa~R~g~~I~~~~~e~~~~~~~~l~~~~~rl~v~~~l~ea~~~~RlyGga~i~i~i~~~D~~~l~ 197 (765) T protein:vir:96 118 SQHWLVDKACSMSGEDAARNGWELKSDGRKLSDEQSALIARRDMEFRVKDNLVELNRFKNVFGVRIALFVVESDDPDYYE 197 (765) T ss_pred HhCchhhhhhhcchHHhhcCCceeecCccccCHHHHHHHHHHHHHhhHHHHHHHHHHHhhhceeeEEEEEecccCcchhh Confidence 457889999999999987777766432110 11111000111233344445555688888877642 1 Q ss_pred --------cCCceeEEEEeccccceeeec----CC-CceEEE---EEEecCCcceeeEEEecceEEEecCCCc------c Q lcl|Aclame:pro 117 --------ANGADMKWEYLRPSQVNTYYF----EY-ENGMYY---NITFDDPKIEPILQAPQSDLIHMKLLSI------D 174 (392) Q Consensus 117 --------~~G~~~~l~~l~~~~v~~~~~----~~-~~~~~~---~~~~~~~~~~~~~~~~~~~vih~~~~~~------~ 174 (392) ..|....+..++|.++.+... .+ ...-|+ .|.+. ...+..+.|||+.+... . T Consensus 198 ~PL~~~~I~kg~~kgl~vldp~~~~~~~v~e~~~Dp~sp~fg~P~~y~i~------g~~IH~SRli~~~g~~lpd~lk~~ 271 (765) T protein:vir:96 198 KPFNPDGIAPGSYKGISQIDPYWAMPQLTAESTADPSAEHFYEPDFWIIS------GKKYHRSHLVVVRGPQPPDILKPT 271 (765) T ss_pred ccccccccccceeeEEEEechhhcccccchhccccccccccCcceeeeec------CceeccceEEEecCCCchhhhccc Confidence 123455677788777665321 11 011111 11222 13678899999876542 1 Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCC--CCchHHHHHHHHHHHhccccCCceeeccCCceE Q lcl|Aclame:pro 175 GGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGG--GLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEF 252 (392) Q Consensus 175 ~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~ 252 (392) ....|.|.++.+...|.....+......++.+.... +++++.. ...++...++........+| .++++++.+-+| T Consensus 272 ~~~~G~Svlq~~yd~I~~~~~t~~~~a~Ll~k~~~~--v~k~~~~~~l~~~~~l~~r~~~~~~~r~n-~g~~~id~ee~~ 348 (765) T protein:vir:96 272 YIFGGIPLTQRIYERVYAAERTANEAPLLAMSKRTS--TIHVDVEKAIANEDAFNARLAFWIANRDN-HGVKVIGIDETM 348 (765) T ss_pred cCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccc--eeeechHhhhccHHHHHHHHHHHHHhcCC-ceeEEecCCcce Confidence 224699999999999999988887788877765543 3444432 22334444444433344444 457889999999 Q ss_pred EeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcc-ccc-ch-HHHHHHHHH-------HHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 253 TALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQG-DQQ-SS-IQQISGMYA-------SALNRYLRPAISELEYKL 322 (392) Q Consensus 253 ~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~-~~~-~~-~~~~~~~~~-------~~l~p~l~~i~~~l~~~l 322 (392) ++++.+..++ .+......++||.+.+||...|-+.. .+. ++ .+..+.||. ..+.|.++.+-+.|-..- T Consensus 349 e~~s~~lsgl--~d~l~~~~~~iAaas~IP~t~LfGqsp~GlnATGe~D~~nYyD~I~s~Qe~~l~p~le~L~~li~~s~ 426 (765) T protein:vir:96 349 EQFDTNLSDF--DSVIMNQYQLVAAIAKTPATKLLGTSPKGFNATGEHETISYHEELESIQEHIFDPLLERHYLLLAKSE 426 (765) T ss_pred eEEecccCCH--HHHHHHHHHHHHhhhCCCeeeeccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 9999887654 57888888999999999998664432 322 23 224444443 445555555554443321 Q ss_pred --hhhhccchhhhhhcChHHHH-------HHHHHHHhCCccCHHHHHHHHHhCC---CCC--cccccc-cCCCCCCC--- Q lcl|Aclame:pro 323 --SDHISVNMRPAIDPLGDNYL-------STISTATRWGALAENQATFVLQEAG---YIP--KDLPAP-ENTNKKTT--- 384 (392) Q Consensus 323 --~~~~~~d~~~~~~~~~~~~~-------~~~~~~~~~g~~t~nE~R~~l~~~g---~~~--~e~~~~-~~~~~~~~--- 384 (392) .+.+.+.+..+...+.++++ +.+..++.+|+++++|+|+.|...+ +.. ++..+. ....|... T Consensus 427 ~i~~d~~i~FnpL~~~sekEkAei~~k~Aea~~~~~~~Gvis~dEvR~~L~~~~~~g~~~l~d~~~e~~~~~~pe~~~~~ 506 (765) T protein:vir:96 427 SIDVQLEIVWNPVDSTTSQQQAELNNKKAATDEIYINSGVVSPDEVRERLRDDPRSGYNRLTDDQAETEPGMSPENLAEL 506 (765) T ss_pred CCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccccCCCCCCCccccccccCCCccccccc Confidence 12455555566666666554 4577889999999999999986543 221 111110 01111000 Q ss_pred -------------CCCCCCCC Q lcl|Aclame:pro 385 -------------GQSNEPVP 392 (392) Q Consensus 385 -------------gd~~~p~p 392 (392) +..+.+.| T Consensus 507 ~~~~~~~~~~~~e~~~~~a~p 527 (765) T protein:vir:96 507 EKAGAQSAKAKGEAERAEAQA 527 (765) T ss_pred cCCCcccccccCccccccCCC Confidence 01111111 No 116 >protein:vir:108215 Length: 469 # NCBI annotation: gp6 # Family: family:all:2372 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552335;genbank:gi:160700655;genbank:GeneID:5758935 Probab=99.70 E-value=6.3e-16 Score=103.91 Aligned_cols=372 Identities=12% Similarity=0.010 Sum_probs=215.3 Q ss_pred hhhhhcccccccccccccccccCcchhhhhhh------ccCCCCcccchhhhh-cchHHHHHHHHHHHhhhhCceeeecc Q lcl|Aclame:pro 5 ILNFINQTNDPPEAGSVQSYFPDGNDAQIMES------LLGDNNEWVSARAAL-RNSDLFSIILQLSSDLAIVKINAEKK 77 (392) Q Consensus 5 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~al-~~~~v~~~i~~ia~~ia~lp~~~~~~ 77 (392) +-........+.....+.+... .....+++. +.+..+..+- +..+ +.+.|.+|++.+...|.+++|.+... T Consensus 1 ~~~~~~~~~p~~~~g~~~~~~~-~~~~~~~~~~e~~~~lr~~~~~~ly-~~m~e~D~~i~s~l~~rk~av~~~~w~v~p~ 78 (469) T protein:vir:10 1 MTERVKTAAPVSEAGYVFGSGV-VDGWTVWDPFEQTPELQWPQSVAVY-SRMDNEDSRVTSLLEAISLPIRSTPWRIRAN 78 (469) T ss_pred CCCcccCCCCccchhhhhhccc-ccchhhccccccccccccccchHHH-HHHHhhChHHHHHHHHHHHHHhcCCceEecC Confidence 0011111111111111111100 001112211 1111111121 2333 47899999999999999999999643 Q ss_pred hhh--------hhcccC-------------CccCCHHHHHHHHHHHHHHhCCeeEEEeccc-----CC--ceeEEEEecc Q lcl|Aclame:pro 78 KNQ--------GIIDNP-------------STNANKHGFWQSMFAQLLLGGEAFAYRWRNA-----NG--ADMKWEYLRP 129 (392) Q Consensus 78 ~~~--------~~~~~P-------------N~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~-----~G--~~~~l~~l~~ 129 (392) ... ..+..+ +-..++.+++..++.+.+.+|-++.++++.. +| .+..+.+.|+ T Consensus 79 ~~~~e~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~a~~~G~s~~Eivw~~~~~~~dG~~~~~~l~~rp~ 158 (469) T protein:vir:10 79 GASDEVTEFVSRNLMVPIDGEDDVRNPGRSRGRFSWAEHLEEVTSPTLQFGHAVFEQVYRPRNQSPDGRFWLRKLAPRPQ 158 (469) T ss_pred CCCHHHHHHHHHHHHhhhhhhhhhhhhhhhhccccHHHHHHHHHHHhhhhCceeeeeeeecccccCCCceeeeeeeecCc Confidence 221 111111 1234788888888888888999999998643 34 3666777777 Q ss_pred ccc-eeeecCCCceEEEEEEecC--------CcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 130 SQV-NTYYFEYENGMYYNITFDD--------PKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLT 200 (392) Q Consensus 130 ~~v-~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~ 200 (392) .++ .+..+.+++.+........ ........++...+++.++....+..+|.|.+..+.-....-....++. T Consensus 159 ~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lp~~k~i~~~~~~~~g~p~g~gLlr~~~~~~~fK~~~~~~w 238 (469) T protein:vir:10 159 WTISKFNVAPDGGLESIEQIAPPARTRGSLYVANIAPPEIPVNRLVVYTRNKRPGQWQGKSILRSAYKHWLLKDKLLRIE 238 (469) T ss_pred ccceeeeeccCCceeeeeecCcccccccccccCCCCccccccCcEEEEEecCCCCCcccchhHHHHHHHHHHHHHHHHHH Confidence 655 3344555555544322111 0112235677778777777767777899999999999999999999999 Q ss_pred HHHHHccCCcceEEeeCCCCCchHHHH-HHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 201 ISSLNSSLNVPGVLTVKGGGLLSDKDK-ASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVY 279 (392) Q Consensus 201 ~~~~~ng~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~f 279 (392) ..|.+.-|.|--+.+.+.+.+++++.. .+....+....++ .++++.|++++-++.+.....+.+..++..++|+.+. T Consensus 239 ~~f~EryG~P~~vgky~~~a~~~ek~~l~~a~~~~~~g~~a--~~iip~~~~ie~~ea~g~~~~~~~li~~~d~~Isk~i 316 (469) T protein:vir:10 239 AATAERNGMGIPVGTASSATDEDEVRKMAALARSVRGGINA--GVGLAQGQILELLGVSGNLPDIRRAIEGHDRSIALSG 316 (469) T ss_pred HHHHHHcCCcceEEecCCCCCHHHHHHHHHHHHHHhcCCce--EEEccCCceEEEeecCCCchHHHHHHHHHHHHHHHHH Confidence 999999999988988887655544332 2223333222232 5678889888877766666678888899989988764 Q ss_pred cccHHHcCCccc------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------hccchhhhhhcChH Q lcl|Aclame:pro 280 GLPDSYIGGQGD------QQSSIQQISGMYASALNRYLRPAISELEYKLSDH--------------ISVNMRPAIDPLGD 339 (392) Q Consensus 280 gVP~~~lg~~~~------~~~~~~~~~~~~~~~l~p~l~~i~~~l~~~l~~~--------------~~~d~~~~~~~~~~ 339 (392) +|.+.+ +++..+.......+.+.-.++.|++.||+.|.+. +.|+. ...+.+ T Consensus 317 ------LG~tlTs~~~gGS~a~~~vh~ev~~d~~~sDa~~i~~tln~~li~~l~~lN~g~~~~~P~~~~~~---~e~~~~ 387 (469) T protein:vir:10 317 ------LAHFLNLDGKGGSYALASVLEDPFTQAVHAYATSICRIANQHIIEDLVDINFGVDTPAPVLTFDP---IGSRQD 387 (469) T ss_pred ------hcccccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEecC---CCCcHH Confidence 443211 1122233455667788889999999999887542 22221 123445 Q ss_pred HHHHHHHHHHhCCccC-----HHHHHHHHHhCCCCC--cccccccCC---------------CCCCCCCCCCCCC Q lcl|Aclame:pro 340 NYLSTISTATRWGALA-----ENQATFVLQEAGYIP--KDLPAPENT---------------NKKTTGQSNEPVP 392 (392) Q Consensus 340 ~~~~~~~~~~~~g~~t-----~nE~R~~l~~~g~~~--~e~~~~~~~---------------~~~~~gd~~~p~p 392 (392) ..++.+..++..|+.. .+.+|+.+ |+++ ++.+..... .+...+++.++.| T Consensus 388 ~~a~~i~~l~~~G~~~~~~~~~~~~~e~~---gip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (469) T protein:vir:10 388 LTAAAVKLLYDAGVFDDDPAVKRAIRQRF---NLPSELNDTPSAEPEEPAAVPNQSAAPARTRSSGNADARARAP 459 (469) T ss_pred HHHHHHHHHHhcCCccCccccHHHHHHHh---CCCCCCCCcccccchhcccCCCCCccccccCCCCCcccccccC Confidence 6778889999999844 45667765 5442 222221110 0011111222222 No 117 >protein:vir:99853 Length: 488 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164068;genbank:gi:56692600;genbank:GeneID:3192581 Probab=99.61 E-value=3e-14 Score=94.68 Aligned_cols=361 Identities=9% Similarity=-0.026 Sum_probs=198.5 Q ss_pred hcccccccc-c------ccccccccCcc--hhhhhhhccCCCCcccch-hhhhcchHHHHHHHHHHHhhhhCceeeecch Q lcl|Aclame:pro 9 INQTNDPPE-A------GSVQSYFPDGN--DAQIMESLLGDNNEWVSA-RAALRNSDLFSIILQLSSDLAIVKINAEKKK 78 (392) Q Consensus 9 ~~~~~~~~~-~------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~ 78 (392) +++...... + ..++.+...+. ...++.. ..+..+.. +..++.+.|.+|++.+-..|.+++|.+.... T Consensus 1 v~~~~l~~e~at~~~~~d~~~~~~~~l~~~~~~il~~---a~~g~~~~y~~l~~D~~i~s~l~~rk~av~~~~w~i~p~~ 77 (488) T protein:vir:99 1 MEKPALGREIATSGDGRDITRPFISGLQVPNDSILQR---RGGNDLRVYEEILSDAQVKTVWGQRQLAVVSREWKVEAGG 77 (488) T ss_pred CCccchhHHHHHHHhhhhhhccccCCCCCCChHHHHh---hccCCHHHHHHHhhChHHHHHHHHHHHHHhcCCceEEcCC Confidence 333221111 0 00011111100 0111111 11111111 3345678999999999999999999996422 Q ss_pred hh-------hhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccC-C--ceeEEEEeccccceeeecCCCceEEEEEE Q lcl|Aclame:pro 79 NQ-------GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNAN-G--ADMKWEYLRPSQVNTYYFEYENGMYYNIT 148 (392) Q Consensus 79 ~~-------~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~-G--~~~~l~~l~~~~v~~~~~~~~~~~~~~~~ 148 (392) .. ..+..--....+.++++.+.. .+++|.++.++++..+ | .|..+.+.|+.++.+. .+++..+.. T Consensus 78 ~~~~~~~~ae~v~~~l~~~~~~~~l~~~ld-a~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~d--~~~~l~~~~-- 152 (488) T protein:vir:99 78 DRPIDQAAAEHLEQQLQRVGWDRVTSKMLF-GVFYGYAVSELIYGRDDRYITLEAIKVRNRRRFRYD--QDGGLRLLT-- 152 (488) T ss_pred CChHHHHHHHHHHHHHhCCCHHHHHHHHHh-hhhhcceeEEEEEeecCCeeeEeeeeeecccceeec--CCCceEEec-- Confidence 11 111111112357778888774 6789999999986543 3 4678889999877654 344433321 Q ss_pred ecCCcceeeEEEe--cceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCC-CCCchHH Q lcl|Aclame:pro 149 FDDPKIEPILQAP--QSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKG-GGLLSDK 225 (392) Q Consensus 149 ~~~~~~~~~~~~~--~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~-~~~~~~~ 225 (392) .++...+ ..++ ..-++|... ...+..+|.|.+..+.-....-....++...|.+.-|.|-.+.+++. +.+++++ T Consensus 153 ~~~~~~g--~~lp~~~~~i~~~~~-~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~~a~~~ek 229 (488) T protein:vir:99 153 PNNMFEG--EPCPAPYFWHFSTGA-DNDDEPYGLGLAHWLYWPVFFKRNGIKFWLIFLDKFGMPTAVGRYDDKTATPEDK 229 (488) T ss_pred cCCCCCc--cccccCceEEEEeec-CCCCCcccchHHHHHHHHHHHHHhhHHHHHHHHHHcCCceeeeecCCCCCCHHHH Confidence 1222223 3443 334455443 34456689999999999988889999999999999999998888875 3333332 Q ss_pred HHHHHHHHHhccccCCceeeccCCceEEeccCCh-hhHHHHHHHHHHHHHHHHHhcccHHHcCCccc----c--cchHHH Q lcl|Aclame:pro 226 DKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKS-NVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGD----Q--QSSIQQ 298 (392) Q Consensus 226 ~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~-~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~----~--~~~~~~ 298 (392) +...+......+ ...++++.|++++-++.+. ....|.+..++..++|+.+ ++|.+.+ + ++..+. T Consensus 230 --~~l~~av~~~~~-~~~~viP~~~~ie~~ea~~~~~~~~~~li~~~d~~Isk~------iLGqtlts~~~~Gs~a~~~v 300 (488) T protein:vir:99 230 --AKLLAALHAIQT-DSAIIMPAGMQAELLEAGRSGTADYKTLHDTMDATIAKV------GLGQVASTQGTPGRLGNDDL 300 (488) T ss_pred --HHHHHHHHHHhc-CcEEEecCCceeEEeecCCCChHHHHHHHHHHHHHHHHH------HhhhhhcccccccchhhHHH Confidence 222222222222 2356677777655554321 2234788888899999887 4443211 1 112223 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh-hccch----------hhhhhcChHHHHHHHHHHHhC-Cc-cCHHHHHHHHHh Q lcl|Aclame:pro 299 ISGMYASALNRYLRPAISELEYKLSDH-ISVNM----------RPAIDPLGDNYLSTISTATRW-GA-LAENQATFVLQE 365 (392) Q Consensus 299 ~~~~~~~~l~p~l~~i~~~l~~~l~~~-~~~d~----------~~~~~~~~~~~~~~~~~~~~~-g~-~t~nE~R~~l~~ 365 (392) ......+.+.-.++.|++.+|+.|.+. +.++. ...-..|..++++.+.++++. |+ ++..++|+.+ T Consensus 301 h~~v~~d~~~aDa~~i~~tln~~li~~l~~~N~~~~~~p~~~~~~~e~edl~~~a~~~~~l~~~~G~~i~~~~i~e~~-- 378 (488) T protein:vir:99 301 QADVRLDLVKADADLICESFNLGPARWLTEWNFPGAQPPRVYRVIEEPEDITAKAERDEKVFRMSGFRPTRGYVQETY-- 378 (488) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcCCceeEecCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHc-- Confidence 344566778889999999999887542 11111 111123556788889999885 64 7777777765 Q ss_pred CCCCCccccc--ccCCCCCCCCCCCC-CCC Q lcl|Aclame:pro 366 AGYIPKDLPA--PENTNKKTTGQSNE-PVP 392 (392) Q Consensus 366 ~g~~~~e~~~--~~~~~~~~~gd~~~-p~p 392 (392) |+++.+... ....+....+..++ +-| T Consensus 379 -Gip~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (488) T protein:vir:99 379 -GVEVESTQAEATAPTPSTEFAEGDQPSDP 407 (488) T ss_pred -CCCCcccccccccCCCcccCCCCCCCCCc Confidence 665422111 10011111111111 111 No 118 >protein:vir:79063 Length: 491 # NCBI annotation: gp3 # Family: family:all:313 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111203;genbank:gi:134288841;genbank:GeneID:4960737 Probab=99.61 E-value=3.3e-14 Score=94.49 Aligned_cols=367 Identities=8% Similarity=-0.027 Sum_probs=205.2 Q ss_pred Ccchhhh----hhcccccccc-ccc-------ccccccCcchhhhhhhccCCCCccc-chhhhhcchHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MILPILN----FINQTNDPPE-AGS-------VQSYFPDGNDAQIMESLLGDNNEWV-SARAALRNSDLFSIILQLSSDL 67 (392) Q Consensus 1 m~Mg~~n----~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~al~~~~v~~~i~~ia~~i 67 (392) |--||+. +++.....+. ... +.........+.. ..+....+..+ --+..++.+.|.+|++.+-..| T Consensus 1 ~~~~i~~~~g~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~p~~-~~il~~~~~~~~~y~~m~~D~~i~s~l~~Rk~av 79 (491) T protein:vir:79 1 MSKGLWVSPTEFVKFGEPDKSLSSQIATRARSIDFFALGMYLPNP-DPVLKALGKDIRVYRELRADAHVGGCVRRRKAAV 79 (491) T ss_pred CCCeeeCCCCCcccccccchhHHHHHhhhccccccccccccCcch-hHHHhhccCCHHHHHHHhhChHHHHHHHHHHHHH Confidence 7777774 3433221100 000 0000000000000 00100001111 1133456889999999999999 Q ss_pred hhCceeeecchhh--------hhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccC-C--ceeEEEEeccccceeee Q lcl|Aclame:pro 68 AIVKINAEKKKNQ--------GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNAN-G--ADMKWEYLRPSQVNTYY 136 (392) Q Consensus 68 a~lp~~~~~~~~~--------~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~-G--~~~~l~~l~~~~v~~~~ 136 (392) .+++|.+...+.. ..+.++ .+.++++.+. +..++|.++.++++..+ | .|..+.+.|+.++.+.. T Consensus 80 ~~~~w~i~~~~~~~~~a~~i~e~l~~~----~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~d~ 154 (491) T protein:vir:79 80 KALEWGLDRGKAKSRVAKSIADVFADL----DLSRIATEML-DAVLYGYQPMEITWGKVGNYIVPIDVVGKPADWFVYDP 154 (491) T ss_pred hCCCcEEecCCCCHHHHHHHHHHHhcC----CHHHHHHHHH-HhhhhcceeEEEEEeecCCeeeEEeeeeecccceeecc Confidence 9999999743221 123333 4666777665 46789999999986544 3 46789999998887643 Q ss_pred cCCCceEEEEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEee Q lcl|Aclame:pro 137 FEYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTV 216 (392) Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~ 216 (392) +++..+.. .++. .....++...+++.++....+..+|.|.+..+.-....-....++...|.+.-|.|--+.++ T Consensus 155 --~~~l~l~~--~~~~--~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~~G~P~~igky 228 (491) T protein:vir:79 155 --ENQLRFRS--KEHW--VQGEELPARKFLVPRQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVGKH 228 (491) T ss_pred --CCceEEee--cCCC--CCceeecCCCeEEEEecCCCCCcccchhHHHHHHHHHHHHhhHHHHHHHHHHcCCCeEEEec Confidence 34433321 1221 22356777878877777666778999999999999999999999999999999999999999 Q ss_pred CCCCCchHHHHHHHHHHHhccccCCceeeccCCceEEeccC--C-hhhHHHHHHHHHHHHHHHHHhcccHHHcCCcc--c Q lcl|Aclame:pro 217 KGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEI--K-SNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQG--D 291 (392) Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~--~-~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~--~ 291 (392) +.+..++++.. ..+......+ ...++++.|++++-+.. . .....|.+..++..++|+.+. +|.+. + T Consensus 229 ~~~a~~~ek~~--l~~al~~~~~-~a~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~i------LGqtlTt~ 299 (491) T protein:vir:79 229 PRSASDAETNL--LLDRLEDMVQ-DAVAVIPDDSSIEIKEAAGKSGSADVYERLLHFCRGEVSIAL------LGQNQTTE 299 (491) T ss_pred CCCCCHHHHHH--HHHHHHHHhc-CeEEEecCCceeEEEeccCCCCChhHHHHHHHHHHHHHHHHH------hhhhhccC Confidence 87655544322 2222111111 23566777765555432 2 222337777888888887754 55432 1 Q ss_pred ccchH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc----------hhhhhhcChHHHHHHHHHHHhCCc-cCHH Q lcl|Aclame:pro 292 QQSSI---QQISGMYASALNRYLRPAISELEYKLSDHISVN----------MRPAIDPLGDNYLSTISTATRWGA-LAEN 357 (392) Q Consensus 292 ~~~~~---~~~~~~~~~~l~p~l~~i~~~l~~~l~~~~~~d----------~~~~~~~~~~~~~~~~~~~~~~g~-~t~n 357 (392) ++++. +.......+.+.-.++.|++.+|+.+...+.++ +... ..+.+.+++.+..+...|+ ++.. T Consensus 300 ~~gs~a~~~vh~~v~~~i~~~D~~~i~~tln~li~~l~~~N~~~~~~p~f~~~e~-ee~~~~~a~~~~~L~~~G~~i~~~ 378 (491) T protein:vir:79 300 ATSTRASAQAGLEVTDDIRDGDKAIVVEAMNMLIRWICDLNFDGAARPVFDMWEQ-EQVDEIQAGRDEKLTRAGARFTPA 378 (491) T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEeecCc-CchhHHHHHHHHHHHhCCCccCHH Confidence 22222 223345567778888999999986332222221 1110 1112456778889999887 7778 Q ss_pred HHHHHHHhCCCCCccccc--ccCCCCCCCCCCC--------CCCC Q lcl|Aclame:pro 358 QATFVLQEAGYIPKDLPA--PENTNKKTTGQSN--------EPVP 392 (392) Q Consensus 358 E~R~~l~~~g~~~~e~~~--~~~~~~~~~gd~~--------~p~p 392 (392) ++|+.+ |+++.+.-+ .....+.+.+.+. +.+. T Consensus 379 ~~~e~~---Gip~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (491) T protein:vir:79 379 YFKRAY---NLQDGDLDERPLPVSAVDAVGAASFAEFEAPDQDAL 420 (491) T ss_pred HHHHHh---CCCCCCCCccccCcCcccccccccccccCCCCCcch Confidence 888765 554311100 0000000000000 0000 No 119 >protein:vir:99232 Length: 526 # NCBI annotation: putative portal protein # Family: family:all:313 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950451;genbank:gi:119953652;genbank:GeneID:4643092 Probab=99.58 E-value=1.1e-13 Score=91.68 Aligned_cols=371 Identities=10% Similarity=0.000 Sum_probs=202.7 Q ss_pred chh-hhhhcccccc-----ccccc---ccccc-----cCcchhhhhhhccCCCCcccch-----hhhh-cchHHHHHHHH Q lcl|Aclame:pro 3 LPI-LNFINQTNDP-----PEAGS---VQSYF-----PDGNDAQIMESLLGDNNEWVSA-----RAAL-RNSDLFSIILQ 62 (392) Q Consensus 3 Mg~-~n~~~~~~~~-----~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-----~~al-~~~~v~~~i~~ 62 (392) |.- ++...+.... +.+.. .+..+ ..++-......+....+..+.. +..+ +.+.|.+|++. T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iLr~a~~gd~~~~~~L~e~m~e~D~~i~s~l~~ 80 (526) T protein:vir:99 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) T ss_pred CCeeECCCCCccccccccchhhhhhhhhhhhhcccCcCCCCHHHHHHHHHhhhCCCHHHHHHHHHHHHhhChHHHHHHHH Confidence 432 3433332111 00100 01110 0111111111111111111211 1222 47899999999 Q ss_pred HHHhhhhCceeeecchh---------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccC-C--ceeEEEEeccc Q lcl|Aclame:pro 63 LSSDLAIVKINAEKKKN---------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNAN-G--ADMKWEYLRPS 130 (392) Q Consensus 63 ia~~ia~lp~~~~~~~~---------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~-G--~~~~l~~l~~~ 130 (392) +-..|.+++|.+..... +.+...=+..-.+.+++..+. +..++|-+..++++..+ | .|..+.+.++. T Consensus 81 Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Eivw~~~~g~~~~~~l~~r~~~ 159 (526) T protein:vir:99 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQS 159 (526) T ss_pred HHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcccCHHHHHHHHH-HhhhhcceeEEEEEeecCCceeEEEeeeeccc Confidence 99999999999864211 111111111113666777766 46789999999986544 3 47788999998 Q ss_pred cceeeecCCCceEEEEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCc Q lcl|Aclame:pro 131 QVNTYYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNV 210 (392) Q Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~ 210 (392) ++.+..+. +..... .++...+ ..++...++..++....+..+|.|.+..+.-....-....++...|.+.-|.| T Consensus 160 ~f~~~~~~--~~~l~~--~~~~~~g--~~l~~~k~i~~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P 233 (526) T protein:vir:99 160 WFQLNPED--QNELRL--RDNSPAG--EALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLP 233 (526) T ss_pred ceeeccCC--CcEEEe--cCCCCCc--eeecCCCeEEEeecCCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCc Confidence 87765433 322211 1222222 45566655444555566677899999999999998888999999999999999 Q ss_pred ceEEeeCCCCCchHHHHHHHHHHHhccccCCceeeccCCceEEeccCCh-hhHHHHHHHHHHHHHHHHHhcccHHHcCCc Q lcl|Aclame:pro 211 PGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKS-NVAQLLSQTDWTSKQYAKVYGLPDSYIGGQ 289 (392) Q Consensus 211 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~-~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~ 289 (392) --+.+++.+..++++. ...+......+ ...++++.|++++=+..+. ....|.+..++..++|+.++ +|.+ T Consensus 234 ~~igky~~~a~~~ek~--~L~~av~~i~~-d~~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~i------LGqt 304 (526) T protein:vir:99 234 IRLGKYPPGTADEEKA--TLLRAVTGLGH-AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAV------LGGT 304 (526) T ss_pred eEEEecCCCCCHHHHH--HHHHHHHHHhh-CcEEEecCCceeEEeecCCCCHHHHHHHHHHHHHHHHHHH------hhhh Confidence 9999998765544432 22222222111 2357777777665555322 22347788888888888763 4532 Q ss_pred cc------ccchH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hccchh--------------hhhhcChHHHHHHH Q lcl|Aclame:pro 290 GD------QQSSI---QQISGMYASALNRYLRPAISELEYKLSDH-ISVNMR--------------PAIDPLGDNYLSTI 345 (392) Q Consensus 290 ~~------~~~~~---~~~~~~~~~~l~p~l~~i~~~l~~~l~~~-~~~d~~--------------~~~~~~~~~~~~~~ 345 (392) .+ .+++. +-......+.+.-.++.|++.||+.|.+. +.++.. ..-..|...+++.+ T Consensus 305 lTs~~~~g~~gS~a~g~vh~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~~~~e~eDl~~~a~~~ 384 (526) T protein:vir:99 305 LTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSI 384 (526) T ss_pred hccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEeCCCCcccHHHHHHHH Confidence 11 11222 12234456677788999999999877532 111110 01123456688899 Q ss_pred HHHHhCCc-cCHHHHHHHHHhCCCC-C-cccccccCCCCCCCCCCC----------C-----CCC Q lcl|Aclame:pro 346 STATRWGA-LAENQATFVLQEAGYI-P-KDLPAPENTNKKTTGQSN----------E-----PVP 392 (392) Q Consensus 346 ~~~~~~g~-~t~nE~R~~l~~~g~~-~-~e~~~~~~~~~~~~gd~~----------~-----p~p 392 (392) ..+...|+ ++..++|+.+ |++ | ++-+......+.+..... . |.+ T Consensus 385 ~~L~~~G~~i~~~~i~e~~---Gip~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (526) T protein:vir:99 385 PALVNVGLEIPSAWVYDKL---GIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQ 446 (526) T ss_pred HHHHhCCCccCHHHHHHHh---CCCCCCCcccccCCCCCCcccccccccccccccccccccCcch Confidence 99999987 8888888876 543 2 111111110000000000 0 000 No 120 >protein:vir:103860 Length: 528 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938234;genbank:gi:38229139;genbank:GeneID:2648175 Probab=99.57 E-value=9.5e-14 Score=91.99 Aligned_cols=370 Identities=11% Similarity=0.019 Sum_probs=203.8 Q ss_pred ch-hhhhhccccccccccccc--------ccc-----cCcchhhhhhhccCCCCcccchh-----hhh-cchHHHHHHHH Q lcl|Aclame:pro 3 LP-ILNFINQTNDPPEAGSVQ--------SYF-----PDGNDAQIMESLLGDNNEWVSAR-----AAL-RNSDLFSIILQ 62 (392) Q Consensus 3 Mg-~~n~~~~~~~~~~~~~~~--------~~~-----~~~~~~~~~~~~~~~~~~~~~~~-----~al-~~~~v~~~i~~ 62 (392) |. |++...+....+...... ..+ ...+-......+....+..+... ..+ +.+.|.+|++. T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~~~~~L~~~m~e~D~~i~s~l~~ 80 (528) T protein:vir:10 1 MAAIVDIYGNPLRTQQLRKQQTAHLAGLAKEFANHPAKGLTPAKLAHILIEAEQGHLQAQAELFMDMEERDAHLFAEMSK 80 (528) T ss_pred CCeeECCCCCccccccccchhhhhhhhhhhhhcccCCCCCCHHHHHHHHHhhhCCCHHHHHHHHHHHHhhChHHHHHHHH Confidence 44 345555543322111100 000 00111111111111111112211 112 57889999999 Q ss_pred HHHhhhhCceeeecchh-----hh---hcccCCccC-CHHHHHHHHHHHHHHhCCeeEEEecccC-C--ceeEEEEeccc Q lcl|Aclame:pro 63 LSSDLAIVKINAEKKKN-----QG---IIDNPSTNA-NKHGFWQSMFAQLLLGGEAFAYRWRNAN-G--ADMKWEYLRPS 130 (392) Q Consensus 63 ia~~ia~lp~~~~~~~~-----~~---~~~~PN~~~-t~~~f~~~~~~~l~l~G~a~~~i~r~~~-G--~~~~l~~l~~~ 130 (392) +...|.+++|.+..... .. .+...=... .+.+++..+. +..++|.++.++++..+ | .|..+.+.++. T Consensus 81 Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~f~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~~~~r~~~ 159 (528) T protein:vir:10 81 RKRAVLGLDWTIEPPRNASAAEKADAEYLHELLLDLEGIEDLMLDCM-DGVGHGYSAIELDWSLQGREWLPQAFDHRPQS 159 (528) T ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhCCccHHHHHHHHH-hhhhhcceeEEEEEeecCCceeEEEeeeeccc Confidence 99999999999874211 11 111111111 2445555555 45689999999986443 3 47788999998 Q ss_pred cceeeecCCCceEEEEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCc Q lcl|Aclame:pro 131 QVNTYYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNV 210 (392) Q Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~ 210 (392) ++.+..+ ++..+.. .++... ...++...++..++....+..+|.|.+..+.-....-....++...|.+.-|.| T Consensus 160 ~f~~~~~--~~~~l~~--~~~~~~--g~~l~~~k~iv~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P 233 (528) T protein:vir:10 160 WFQLNPD--DQDELRL--RDNSIA--GEVLQPFGWIMHKPRSRSGYVARSGLFRVLAWPYLFKHYSTADLAEMLEIYGLP 233 (528) T ss_pred ceeeccC--CCcEEec--cCCCCC--ceeecCCCeEEEeecCCCCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCC Confidence 8776443 3322211 112222 245666666665666667777899999999999999999999999999999999 Q ss_pred ceEEeeCCCCCchHHHHHHHHHHHhccccCCceeeccCCceEEeccCCh-hhHHHHHHHHHHHHHHHHHhcccHHHcCCc Q lcl|Aclame:pro 211 PGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKS-NVAQLLSQTDWTSKQYAKVYGLPDSYIGGQ 289 (392) Q Consensus 211 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~-~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~ 289 (392) --+.+++.+..++++. ...+......+ ...++++.|++++=+..+. .-..|.+..++..++|+.+. +|.+ T Consensus 234 ~~igky~~~a~~~ek~--~L~~al~~i~~-~~~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~i------LGqt 304 (528) T protein:vir:10 234 IRLGKYPPGTPDEEKV--TLLRAVTGLGH-AAAGIIPESMSIDFQEASKGSAEPFMAMMRWCDDSMSKAI------LGGT 304 (528) T ss_pred eEEEecCCCCCHHHHH--HHHHHHHHHhh-CcEEEecCCceeEEeecCCCChhHHHHHHHHHHHHHHHHH------hhhh Confidence 9999998765544432 23222222222 2356677776655554322 22346788888888887753 4432 Q ss_pred cc------ccchHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccchh--------------hhhhcChHHHHHHH Q lcl|Aclame:pro 290 GD------QQSSIQ---QISGMYASALNRYLRPAISELEYKLSDHI-SVNMR--------------PAIDPLGDNYLSTI 345 (392) Q Consensus 290 ~~------~~~~~~---~~~~~~~~~l~p~l~~i~~~l~~~l~~~~-~~d~~--------------~~~~~~~~~~~~~~ 345 (392) .+ ..++.+ -......+.+.-.++.|++.||+.|.+.+ .++.. ..-..|...+++.+ T Consensus 305 lTs~~~~g~~gS~Alg~vh~~v~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~~~~~~p~~~~~~~e~eDl~~~a~~~ 384 (528) T protein:vir:10 305 LTSQTSESGGGAYALGQVHNEVRHDLLAADARQLAATLSRDLLWPLLVLNRSGNLDARRAPRLVFDLKDRADLAAMATSL 384 (528) T ss_pred hhccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEecCCCcccHHHHHHHH Confidence 11 112221 12345567778899999999998875421 11111 11123456678888 Q ss_pred HHHHhCCc-cCHHHHHHHHHhCCCCC---cccccccCCCCCCCCCC-CCCCC Q lcl|Aclame:pro 346 STATRWGA-LAENQATFVLQEAGYIP---KDLPAPENTNKKTTGQS-NEPVP 392 (392) Q Consensus 346 ~~~~~~g~-~t~nE~R~~l~~~g~~~---~e~~~~~~~~~~~~gd~-~~p~p 392 (392) ..+...|+ ++..++|+.+ |++. .|.......++ +.... ..|.| T Consensus 385 ~~L~~~G~~i~~~~i~e~~---gip~p~~~e~~~~~~~~~-~~~~~~~~~~~ 432 (528) T protein:vir:10 385 PPLVKLGVQVPVNWVQEQL---GIPLPANGEAVLGDQAGA-GIAQLSRRPGP 432 (528) T ss_pred HHHHhCCCCCCHHHHHHHh---CCCCCCCCcccccCCCcc-cccccCccccc Confidence 99999998 8888888876 5431 11111110000 00000 00000 No 121 >protein:vir:107880 Length: 491 # NCBI annotation: gp29 # Family: family:all:313 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024702;genbank:gi:48696939;genbank:GeneID:2845968 Probab=99.57 E-value=1.6e-13 Score=90.81 Aligned_cols=365 Identities=9% Similarity=-0.001 Sum_probs=206.9 Q ss_pred Ccchhhh----hhccccccc-cccc-------cccc---ccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHH Q lcl|Aclame:pro 1 MILPILN----FINQTNDPP-EAGS-------VQSY---FPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSS 65 (392) Q Consensus 1 m~Mg~~n----~~~~~~~~~-~~~~-------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~ 65 (392) |--||++ ++......+ .... ...+ .+......++... +. ...+ -+..++.+.|.+|++.+-. T Consensus 1 m~~~i~~~~g~p~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~iLr~~-~~-~~~~-y~~m~~D~~i~s~l~~Rk~ 77 (491) T protein:vir:10 1 MSKGLWVSPTEFVTFGEPDKSLSSQIATRARSIDFFALGMYLPNPDPVLKAL-GK-DIRV-YRELRADAHVGGCVRRRKA 77 (491) T ss_pred CCCceeCCCCCccCcccCChHHHHHHHhhhcccccccccCCccchHHHHHhc-CC-CHHH-HHHHhhChHHHHHHHHHHH Confidence 8888875 332211100 0000 0000 0000001111110 00 1111 1334567899999999999 Q ss_pred hhhhCceeeecchhh--------hhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCC---ceeEEEEecccccee Q lcl|Aclame:pro 66 DLAIVKINAEKKKNQ--------GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANG---ADMKWEYLRPSQVNT 134 (392) Q Consensus 66 ~ia~lp~~~~~~~~~--------~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G---~~~~l~~l~~~~v~~ 134 (392) .|.+++|.+...+.+ ..+.++ .+.++++.+. +..++|.+..++++...| .|..+.+.|+.++.+ T Consensus 78 av~~~~w~i~~~~~~~~~~e~v~e~l~~~----~~~~~l~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~ 152 (491) T protein:vir:10 78 AVKALEWGLDRGKAKSRVAKSIADVFADL----DLSRIVTEML-DAVLYGYQPMEITWGKVGNYIVPIDVVGKPADWFVY 152 (491) T ss_pred HHhCCCcEEecCCCCHHHHHHHHHHHhcC----CHHHHHHHHH-HhhhhcceeEEEEEeecCCeeEEEEeeeecccceee Confidence 999999999742221 123333 4677888776 567899999999865543 466899999988775 Q ss_pred eecCCCceEEEEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEE Q lcl|Aclame:pro 135 YYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVL 214 (392) Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~ 214 (392) . .+++..+.. .++. .....++...+++.++....+..+|.|.+..+.-....-....++...|.+.-|.|--+. T Consensus 153 d--~~~~l~~~~--~~~~--~~g~~l~~~k~i~~~~~~~~~~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~ig 226 (491) T protein:vir:10 153 D--PENQLRFRS--KDHW--MQGEELPARKFLVPRQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVG 226 (491) T ss_pred c--cCCceEEec--CCCC--CCcceecCCCEEEEEecCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE Confidence 4 334433321 1211 223567777777777766667788999999999999999999999999999999999999 Q ss_pred eeCCCCCchHHHHHHHHHHHhccccCCceeeccCCceEEeccC--ChhhH-HHHHHHHHHHHHHHHHhcccHHHcCCcc- Q lcl|Aclame:pro 215 TVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEI--KSNVA-QLLSQTDWTSKQYAKVYGLPDSYIGGQG- 290 (392) Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~--~~~d~-~~~e~~~~~~~~Ia~~fgVP~~~lg~~~- 290 (392) +++.+..++++.. ..+......+ ...++++.|++++-+.. +.... .|.+..++..++|+.+ ++|.+. T Consensus 227 ky~~~a~~~ek~~--l~~al~~~~~-~a~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~------iLGqtlT 297 (491) T protein:vir:10 227 KHPRSASDGEKNL--LLDCLEDMVQ-DAVAVVPDDSSIEIKEAAGKTGSADVYERLLHFCRGEVSIA------LLGQNQT 297 (491) T ss_pred ecCCCCCHHHHHH--HHHHHHHHhc-CcEEEecCCceeEEEecCCCCCChhHHHHHHHHHHHHHHHH------Hhhhhcc Confidence 9987655554332 2222222111 23567777776655443 22222 3777788888888776 455431 Q ss_pred -cccchH---HHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhccchh------hh---hhcChHHHHHHHHHHHhCCc-cC Q lcl|Aclame:pro 291 -DQQSSI---QQISGMYASALNRYLRPAISELEYKLSD-HISVNMR------PA---IDPLGDNYLSTISTATRWGA-LA 355 (392) Q Consensus 291 -~~~~~~---~~~~~~~~~~l~p~l~~i~~~l~~~l~~-~~~~d~~------~~---~~~~~~~~~~~~~~~~~~g~-~t 355 (392) +++++. +.......+.+.-..+.|++.+|+ |.. .+.++.. .. ...+.+.+++.+.++...|+ ++ T Consensus 298 t~~~gs~a~~~vh~~v~~di~~~D~~~i~~tln~-li~~l~~~N~~~~~~p~f~~~~~~e~~~~~a~~~~~L~~~G~~i~ 376 (491) T protein:vir:10 298 TEATSTRASAQAGLEVTDDIRDGDKAVVSEAMNM-LIRWICDLNFDGADRPVFDMWEQEQVDEIQAGRDQKLTQAGARFT 376 (491) T ss_pred cCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCcceEEecCcCchhHHHHHHHHHHHhCCCcCC Confidence 122222 223345567777888899999986 532 2222110 00 01123567888889999887 77 Q ss_pred HHHHHHHHHhCCCCCcc--cccccCCCCCCCC--------CCCCCCC Q lcl|Aclame:pro 356 ENQATFVLQEAGYIPKD--LPAPENTNKKTTG--------QSNEPVP 392 (392) Q Consensus 356 ~nE~R~~l~~~g~~~~e--~~~~~~~~~~~~g--------d~~~p~p 392 (392) ..++|+.+ |++..+ .+.....++.+.+ ..+++.+ T Consensus 377 ~~~i~e~~---Gip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (491) T protein:vir:10 377 PAYFKRAY---NLQDGDLDERPLPVSAVDTVGAASFAEFEAPDQDAL 420 (491) T ss_pred HHHHHHHh---CCCCCCcCccccccCCCCCcccccccccCCCCCCch Confidence 77777765 554311 1100000000000 0111111 No 122 >protein:vir:389 Length: 530 # NCBI annotation: gp4 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046899;genbank:gi:9630468;genbank:GeneID:1261643 Probab=99.56 E-value=1.1e-13 Score=91.68 Aligned_cols=388 Identities=10% Similarity=-0.013 Sum_probs=204.5 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCC--C----------CcccchhhhhcchHHHHHHHHHHHhhh Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGD--N----------NEWVSARAALRNSDLFSIILQLSSDLA 68 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~~~~~al~~~~v~~~i~~ia~~ia 68 (392) |.|.=..-...+........+..- ..........|.... . -..-+.+-+..++.+.+||+.+.+.|- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-a~~~~~~~~~w~~~~~s~~~~i~~~~~~lr~RaRdl~rNn~~a~~av~~~~~nvV 79 (530) T protein:vir:38 1 MKIPSLVGPDGKTSLREYAGYHGG-GGGFGGQLRGWNPPSESADAALLPNYSRGNARADDLVRNNGYAANAVQLHQDHIV 79 (530) T ss_pred CccceeecCccccchHHHhhhhcc-cCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhh Confidence 444322111111111000000000 000000111111100 0 011122233356889999998887775 Q ss_pred hCceeeecc-----------h-----------hhhhcccCCc------cCCHHHHHHHHHHHHHHhCCeeEEEecccC-C Q lcl|Aclame:pro 69 IVKINAEKK-----------K-----------NQGIIDNPST------NANKHGFWQSMFAQLLLGGEAFAYRWRNAN-G 119 (392) Q Consensus 69 ~lp~~~~~~-----------~-----------~~~~~~~PN~------~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~-G 119 (392) .--+.+.-+ . ...+.+.|+. .++..++.+.++..++..|++|+.+.+... | T Consensus 80 G~Gi~~~~~p~~~~l~~~~~~~~~~~~~ie~~w~~W~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~~~~~~~~g 159 (530) T protein:vir:38 80 GSFFRLSYRPSWRYLGINEEDSRAFSRDVEAAWNEYAEDDFCGIDAERKRTFTMMIREGVAMHAFNGELCVQATWDSDST 159 (530) T ss_pred CCCceeeeccchhhcCCCHhHHHHHHHHHHHHHHHhhcCCCcEEeeeccCCHHHHHHHHHHHHhhCCceEEEeeeccCCC Confidence 555554321 0 1122345543 478999999999999999999999886543 3 Q ss_pred --ceeEEEEeccccceee--------------ecCCCceEEEEEEecCC---cce------eeEEEecceEEEecCCCcc Q lcl|Aclame:pro 120 --ADMKWEYLRPSQVNTY--------------YFEYENGMYYNITFDDP---KIE------PILQAPQSDLIHMKLLSID 174 (392) Q Consensus 120 --~~~~l~~l~~~~v~~~--------------~~~~~~~~~~~~~~~~~---~~~------~~~~~~~~~vih~~~~~~~ 174 (392) .+..|..|+|+.+... .|..|..+.|.+..... ... ....++..+|+|+...... T Consensus 160 ~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v~a~~vlH~f~~~r~ 239 (530) T protein:vir:38 160 RLFRTQFKMVSPKRVSNPNNIGDTRNCRAGVKINDSGAALGYYVSDDGYPGWMAQNWTYIPRELPGGRPSFIHVFEPMED 239 (530) T ss_pred CccceEEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEEeeccCCCccccccceeeeeeccChhHeEeeccccCC Confidence 3678899999887643 23333344444332211 001 1244667799999988878 Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH------------HHHH----HHH---HHHh Q lcl|Aclame:pro 175 GGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD------------KDKA----SRS---RSFM 235 (392) Q Consensus 175 ~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~------------~~~~----~~~---~~~~ 235 (392) +...|+|.+..+...+.....-......-.+-.+.-.++|+.+.+..... .... ... .... T Consensus 240 gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (530) T protein:vir:38 240 GQTRGANAFYSVMEQMKMLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFILGADNKEQQSKLTGWLGEMAAYYSAAP 319 (530) T ss_pred CcccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeeccCCccccccccccCCcccccccccccchhhhhcccccc Confidence 88999999999988887766666655555555556677777544221100 0000 000 0001 Q ss_pred ccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCC-ccc-ccchH-HHHHH-------HHHH Q lcl|Aclame:pro 236 KRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGG-QGD-QQSSI-QQISG-------MYAS 305 (392) Q Consensus 236 ~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~-~~~-~~~~~-~~~~~-------~~~~ 305 (392) -.-..|.+..|..|.+++.++.+-...+|.+..+...+.||+.+|||.+.|-+ .++ ++|+. ..... .-.. T Consensus 320 ~~l~pG~i~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~ 399 (530) T protein:vir:38 320 VRLGGARVPHLLPGDSLNLQSAQDTDNGYSTFEQSLLRYIAAGLGVSYEQLSRNYSQMSYSTARASANESWAYFMGRRKF 399 (530) T ss_pred eeccCceeeecCCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHH Confidence 11245678889999999988877556678899999999999999999998843 222 23321 11111 1123 Q ss_pred HHHHHHHHHHHH-HHHHhhh-hhc------cch----hhhhh----------cChHHHHHHHHHHHhCCccCHHHHHHHH Q lcl|Aclame:pro 306 ALNRYLRPAISE-LEYKLSD-HIS------VNM----RPAID----------PLGDNYLSTISTATRWGALAENQATFVL 363 (392) Q Consensus 306 ~l~p~l~~i~~~-l~~~l~~-~~~------~d~----~~~~~----------~~~~~~~~~~~~~~~~g~~t~nE~R~~l 363 (392) .+.+++++|-+. |+..+.. .+. ++. ....+ .|+..-+.....++++|+.|+-++-.. T Consensus 400 ~~~~~~~pi~~~wl~~av~~G~i~~p~~~~~~~~~~~~a~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a~- 478 (530) T protein:vir:38 400 VASRQACQMFLCWLEEAIVRRVVTLPSKARFSFQEARTAWGNANWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECAK- 478 (530) T ss_pred HHHHHhhHHHHHHHHHHHHcCCccCCCCCCCCchhhHHhhhceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHH- Confidence 445555544433 3333322 111 111 11111 367777788889999999999875332 Q ss_pred HhCCCCCccccc---c-------cCCCC--------CCCCCCCCCCC Q lcl|Aclame:pro 364 QEAGYIPKDLPA---P-------ENTNK--------KTTGQSNEPVP 392 (392) Q Consensus 364 ~~~g~~~~e~~~---~-------~~~~~--------~~~gd~~~p~p 392 (392) .|..+.++-+ . -+++. ..+....+..| T Consensus 479 --~G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~ 523 (530) T protein:vir:38 479 --RGDDYQEIFAQQVRESMERRAAGLNPPAWAAAAFEAGVKKSNEEE 523 (530) T ss_pred --cCCCHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCCCCCCCCC Confidence 3444432100 0 01111 11111111111 No 123 >protein:vir:79233 Length: 526 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469155;genbank:gi:157834998;genbank:GeneID:5648814 Probab=99.53 E-value=3e-13 Score=89.27 Aligned_cols=371 Identities=10% Similarity=0.008 Sum_probs=203.6 Q ss_pred ch-hhhhhccccccc-----cc---ccccccc-----cCcchhhhhhhccCCCCcccch-----hhhh-cchHHHHHHHH Q lcl|Aclame:pro 3 LP-ILNFINQTNDPP-----EA---GSVQSYF-----PDGNDAQIMESLLGDNNEWVSA-----RAAL-RNSDLFSIILQ 62 (392) Q Consensus 3 Mg-~~n~~~~~~~~~-----~~---~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-----~~al-~~~~v~~~i~~ 62 (392) |. |++...+..... .+ ...+..+ ..++-......+....+..+.. +..+ +.+.|.+|++. T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~~~~~L~edm~e~D~~i~s~l~~ 80 (526) T protein:vir:79 1 MAQIVDVYGNPIRPQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) T ss_pred CCeeeCCCCCccCccccchhhhhhhhhhhhhcccCCCCCcCHHHHHHHHHHhhCCCHHHHHHHHHHHHhhChHHHHHHHH Confidence 33 334333322111 00 0011111 0111111111111111111111 1222 46889999999 Q ss_pred HHHhhhhCceeeecchh---------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccC-C--ceeEEEEeccc Q lcl|Aclame:pro 63 LSSDLAIVKINAEKKKN---------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNAN-G--ADMKWEYLRPS 130 (392) Q Consensus 63 ia~~ia~lp~~~~~~~~---------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~-G--~~~~l~~l~~~ 130 (392) +-..|.+++|.+..... +.+...=+....+.+++..+.. ..++|-++.++++..+ | .|..+.+.++. T Consensus 81 Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~ld-A~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~ 159 (526) T protein:vir:79 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALD-GIGHGYSCIELEWALQGREWMPLAFHHRPQS 159 (526) T ss_pred HHHHHhCCCceEecCCCCChHHHHHHHHHHHHHhcccCHHHHHHHHHh-hhhhcceeEEEEEeecCCceeEEEeeeeccc Confidence 99999999999864211 1111111111136666766665 6689999999986554 3 47788899988 Q ss_pred cceeeecCCCceEEEEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCc Q lcl|Aclame:pro 131 QVNTYYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNV 210 (392) Q Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~ 210 (392) ++.+..+. +..... ..+...+ ..++...++..++....+..+|.|.+..+.-....-....++...|.+.-|.| T Consensus 160 ~F~~~~~~--~~~l~~--~~~~~~g--~~l~~~k~iv~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~F~E~yG~P 233 (526) T protein:vir:79 160 WFQLNPED--QNELRL--RDNSPAG--EALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLP 233 (526) T ss_pred ceEeccCC--CcEEEe--cCCCCCc--eeecCCceEEEeecCCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCc Confidence 87764433 322211 1222222 45666666555666666778899999999998888888999999999999999 Q ss_pred ceEEeeCCCCCchHHHHHHHHHHHhccccCCceeeccCCceEEeccCCh-hhHHHHHHHHHHHHHHHHHhcccHHHcCCc Q lcl|Aclame:pro 211 PGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKS-NVAQLLSQTDWTSKQYAKVYGLPDSYIGGQ 289 (392) Q Consensus 211 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~-~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~ 289 (392) --+.+++.+..++++. ...+......+ ...++++.|++++=+..+. ....|.+..++..++|+.+ ++|.+ T Consensus 234 ~~igky~~~a~~~ek~--~L~~av~~i~~-da~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~------iLGqt 304 (526) T protein:vir:79 234 IRLGKYPPGTADEEKA--TLLRAVTGLGH-AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKA------VLGGT 304 (526) T ss_pred eEEEecCCCCCHHHHH--HHHHHHHHHhc-CcEEEecCCceeEEeecCCCCHHHHHHHHHHHHHHHHHH------Hhhhh Confidence 9999998765544432 22222222222 2357777777665555322 2234778888888998876 34542 Q ss_pred cc------ccchH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hccchh--------------hhhhcChHHHHHHH Q lcl|Aclame:pro 290 GD------QQSSI---QQISGMYASALNRYLRPAISELEYKLSDH-ISVNMR--------------PAIDPLGDNYLSTI 345 (392) Q Consensus 290 ~~------~~~~~---~~~~~~~~~~l~p~l~~i~~~l~~~l~~~-~~~d~~--------------~~~~~~~~~~~~~~ 345 (392) .+ .+++. +-......+.+.-.++.|++.||+.|.+. +.++.. ..-..|...+++.+ T Consensus 305 lTs~~~~g~~gS~a~g~vh~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~~~~e~eDl~~~a~~~ 384 (526) T protein:vir:79 305 LTSTTSQSGGGAFALGQVHNEVRHDILASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSI 384 (526) T ss_pred hccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEeCCCCcccHHHHHHHH Confidence 11 11121 22244556777889999999999877542 122111 01123456678889 Q ss_pred HHHHhCCc-cCHHHHHHHHHhCCCC-Cc-ccccccCCCCCCCC---CCCCCCC Q lcl|Aclame:pro 346 STATRWGA-LAENQATFVLQEAGYI-PK-DLPAPENTNKKTTG---QSNEPVP 392 (392) Q Consensus 346 ~~~~~~g~-~t~nE~R~~l~~~g~~-~~-e~~~~~~~~~~~~g---d~~~p~p 392 (392) ..+...|+ ++..++|+.+ |++ |. +.+......+...+ .....++ T Consensus 385 ~~L~~~G~~i~~~~i~e~~---gip~~~~~e~~l~~~~~~~~~~~~~~~~~~~ 434 (526) T protein:vir:79 385 PALVNVGLEIPSAWVYDKL---GIPQPAKNEPVLRPAAQPAILSRQHGQRVAA 434 (526) T ss_pred HHHHhCCCcCCHHHHHHHh---CCCCCCCchhhccccCCcccccccccccccc Confidence 99999987 7888888876 543 21 11111100000000 0000000 No 124 >protein:vir:95542 Length: 548 # NCBI annotation: Putative portal protein # Family: family:all:47 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293348;genbank:gi:148912769;genbank:GeneID:5228194 Probab=99.53 E-value=3.7e-14 Score=94.20 Aligned_cols=388 Identities=11% Similarity=0.041 Sum_probs=203.3 Q ss_pred chhhhhhcccccccc-------cccccccccCcchhhhhhhccCC-C-Cc----------ccchhhhhcchHHHHHHHHH Q lcl|Aclame:pro 3 LPILNFINQTNDPPE-------AGSVQSYFPDGNDAQIMESLLGD-N-NE----------WVSARAALRNSDLFSIILQL 63 (392) Q Consensus 3 Mg~~n~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~-~~----------~~~~~~al~~~~v~~~i~~i 63 (392) |+|++.+.....+.. +...+.+..... .....++... + .. .-+.+-+-.++.+..||+.+ T Consensus 1 Mn~iDr~i~~~sP~~a~~R~~ar~~~~~y~aa~~-~r~~~~~~~~~s~~~~i~~~~~~lr~RaRdL~rNn~~a~~av~~~ 79 (548) T protein:vir:95 1 MNLIDRLLEPLAPELVARRLAAREAIQAYEAARP-GRTHKAKRQPLGADTSLQKSAVSMREQCRKLDEDHDLVTGLLDRL 79 (548) T ss_pred CchHHhHhhhcchHHHHHHHHhHHHhccccccCc-cccccccCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH Confidence 999985544322110 001111110000 0011111100 0 00 01112233468889999987 Q ss_pred HHhh-hh--Ccee--eecch--------------hhhhcccC--CccCCHHHHHHHHHHHHHHhCCeeEEEecccC---- Q lcl|Aclame:pro 64 SSDL-AI--VKIN--AEKKK--------------NQGIIDNP--STNANKHGFWQSMFAQLLLGGEAFAYRWRNAN---- 118 (392) Q Consensus 64 a~~i-a~--lp~~--~~~~~--------------~~~~~~~P--N~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~---- 118 (392) .+.| ++ +-++ ....+ ...+.+++ ...++.+++.+.++..++..|++|+.+.+... T Consensus 80 ~~nvVG~~G~~i~p~~l~~d~~~a~~l~~~ie~~w~~Wa~~~D~~g~~~f~~lq~l~~R~~~~dGE~f~~~~~~~~~~~~ 159 (548) T protein:vir:95 80 EERVVGGSGIGVEPLPLRLDGSVHAELAMEIRSAWAEWSLSPETSGELTRPQVERLMCRTWLRDGEGLAQKLMGRVPNYT 159 (548) T ss_pred HHhccCccccceeeeecCCCHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHHhCCceEEEeeeccccccc Confidence 6554 43 2221 11100 11223333 33478999999999999999999998875432 Q ss_pred ---CceeEEEEeccccceeeecC-------------CCceEEEEEEecCC-------cceeeEEEecceEEEecCCCccc Q lcl|Aclame:pro 119 ---GADMKWEYLRPSQVNTYYFE-------------YENGMYYNITFDDP-------KIEPILQAPQSDLIHMKLLSIDG 175 (392) Q Consensus 119 ---G~~~~l~~l~~~~v~~~~~~-------------~~~~~~~~~~~~~~-------~~~~~~~~~~~~vih~~~~~~~~ 175 (392) ..+..|..|+|+++..-.+. .|..+.|.+....+ .......+++++|+|+......+ T Consensus 160 ~g~~~~~~lqliepd~l~~~~~~~~~~i~~GIE~D~~Grp~aY~i~~~hPgd~~~~~~~~~~~rvpA~~VlHif~~~r~g 239 (548) T protein:vir:95 160 FATSVPFALELLEPDYLPFSYNNLSKGIVQGIERDTWRRKRAYHLLKDHPGNLQTLGGSLAVKRVEAERIIHIAYRKRIG 239 (548) T ss_pred CCcccceEEEEechhhcCCCCCCCCCceeeeeEECCCCceEEEEEeecCCCcccccccccceeeechhHheecccccCCc Confidence 24678999999888643333 33333333332211 12235679999999999888888 Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCcee-eccCCceEEe Q lcl|Aclame:pro 176 GKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPV-VLDDLEEFTA 254 (392) Q Consensus 176 ~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-vl~~g~~~~~ 254 (392) ...|+|.+..+...+............-.+=.+...++++.+............ .....-.-..|.++ .|..|.+++. T Consensus 240 Q~RGvs~lapvl~~l~~l~~y~dael~~aki~A~~a~fi~~~~~~~~~~~~~~~-~~~~~~~~~pG~iv~~L~pGe~i~~ 318 (548) T protein:vir:95 240 QNRGVPMLHAVLIRLADLKDYEESERVAARISAALAMYIKKGNPDSYTVEPGKD-RKNRTIPIAPGMVFDDLEPGEDVGM 318 (548) T ss_pred cccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCccccCCCCcc-cccccccccCCccccccCCCceeee Confidence 899999999998888777666665555555555667777765432221110000 00000111235444 5899999999 Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccc-ccchH-HHHHHH-------HHHHHHHHHHHHHH-HHHHHhhh Q lcl|Aclame:pro 255 LEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGD-QQSSI-QQISGM-------YASALNRYLRPAIS-ELEYKLSD 324 (392) Q Consensus 255 l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~-~~~~~-~~~~~~-------~~~~l~p~l~~i~~-~l~~~l~~ 324 (392) ++.+-....|.+..+...+.||+.+|||.+.|-+..+ ++|+. .....+ -..++..++++|-+ .|+..+.. T Consensus 319 ~~p~~p~~~~~~f~~~~lr~IAaglGipYe~ltgD~s~nYSS~R~~l~e~~r~~~~~q~~~i~~~~~Pi~~~wle~a~l~ 398 (548) T protein:vir:95 319 IESNRPNPFLEGFRNGQLRMIGAGTRSTYSSVSRAYDGTYSAQRQELVEGWLGYDLLQHEFIDYWCRPVYRSWLQMYLLA 398 (548) T ss_pred cCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc Confidence 8876555678899999999999999999998854322 22221 111111 11233445554333 33433322 Q ss_pred -hhcc----chhhhh----------hcChHHHHHHHHHHHhCCccCHHHHHHHH------------------HhCCCCCc Q lcl|Aclame:pro 325 -HISV----NMRPAI----------DPLGDNYLSTISTATRWGALAENQATFVL------------------QEAGYIPK 371 (392) Q Consensus 325 -~~~~----d~~~~~----------~~~~~~~~~~~~~~~~~g~~t~nE~R~~l------------------~~~g~~~~ 371 (392) .+.+ +..... -.|+..-+.....++++|+.|+-|+-... .+.|+..+ T Consensus 399 G~i~lP~~~~~~~~~~~~W~~P~~~~iDP~Kea~A~~~~i~~Gl~T~~~~~a~~G~D~~ev~~q~a~E~~~~~~~GL~~~ 478 (548) T protein:vir:95 399 RKERLPADVDHRTLYAAVYQGPVMPWINPMHEANAWELLVKAGFADEAEVARARGRDPRELKKSRETEIKANRAAGLVFS 478 (548) T ss_pred CCcCCCCCCCchhheeeeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCCC Confidence 1111 111111 13666777788899999999998753322 12233211 Q ss_pred cccccc----CCCCCC-----CCCCCCCCC Q lcl|Aclame:pro 372 DLPAPE----NTNKKT-----TGQSNEPVP 392 (392) Q Consensus 372 e~~~~~----~~~~~~-----~gd~~~p~p 392 (392) ..+... ...+.+ -++...|.| T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (548) T protein:vir:95 479 SDAYHQLVKSGMDPVEAVQKVYLGVGKMLT 508 (548) T ss_pred CcccccccccccCCCCchhhhccccccccc Confidence 111110 000000 001111222 No 125 >protein:vir:96738 Length: 505 # NCBI annotation: putative phage-related protein # Family: family:all:47 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039817;genbank:gi:126010916;genbank:GeneID:5076248 Probab=99.52 E-value=4.2e-14 Score=93.94 Aligned_cols=386 Identities=11% Similarity=0.052 Sum_probs=204.9 Q ss_pred Ccchhhhhhcccc----cccccccccccccCcchhhhhhhc--c--CCCCc----------ccchhhhhcchHHHHHHHH Q lcl|Aclame:pro 1 MILPILNFINQTN----DPPEAGSVQSYFPDGNDAQIMESL--L--GDNNE----------WVSARAALRNSDLFSIILQ 62 (392) Q Consensus 1 m~Mg~~n~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~----------~~~~~~al~~~~v~~~i~~ 62 (392) -.|.+.+.+-... ..+.+...+.+...........+. . ...+. .-+.+-+..++.+.++|+. T Consensus 6 ~~~~~~dr~i~~~~~~~~~~~~~~~~~y~aa~~~r~~~~w~~~~~~~s~~~~i~~~~~~lr~RaRdL~rNn~~a~~av~~ 85 (505) T protein:vir:96 6 KKPSLAQRMVNWAWYRYVEPQKNAARAFEAARRDRLGKAWLRRASRLSADEEIYADLASLVQRAREQSINNPYAKRFYQL 85 (505) T ss_pred cccchhhcccchhhhhhHHHHHHhhhhcccccCCCccccccCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH Confidence 2333333221110 001111111110000000000000 0 00000 1122223356888999997 Q ss_pred HHHhh-hhCceeeecc------------------hhhhhcccCCcc----CCHHHHHHHHHHHHHHhCCeeEEEecccC- Q lcl|Aclame:pro 63 LSSDL-AIVKINAEKK------------------KNQGIIDNPSTN----ANKHGFWQSMFAQLLLGGEAFAYRWRNAN- 118 (392) Q Consensus 63 ia~~i-a~lp~~~~~~------------------~~~~~~~~PN~~----~t~~~f~~~~~~~l~l~G~a~~~i~r~~~- 118 (392) +.+.| +..-++..-+ ....+.+.||.+ ++.+++.+.++..++..|++|+.+.+... T Consensus 86 ~~~nvVG~~Gi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~ 165 (505) T protein:vir:96 86 LKNNVIGPKGMTFQSRVKRRNGKPDDRANTLIEGNWQQWIKKGNCDVTGRYHFVTLLHLWMETLARDGEVLVREHRGYPN 165 (505) T ss_pred HHHHhcCCCcceeeecCCcccccccHHHHHHHHHHHHHhcCCcCcceeccCCHHHHHHHHHHHHhhCCceEEEEeecCCC Confidence 76555 4333322211 112234455543 67889999999999999999998875433 Q ss_pred CceeEEEEeccccceeee----------------cCCCceEEEEEEecCC---------cceeeEEEecceEEEecCCCc Q lcl|Aclame:pro 119 GADMKWEYLRPSQVNTYY----------------FEYENGMYYNITFDDP---------KIEPILQAPQSDLIHMKLLSI 173 (392) Q Consensus 119 G~~~~l~~l~~~~v~~~~----------------~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~vih~~~~~~ 173 (392) ..+..|..|+|+++..-. |..|..+.|.+....+ .......+++.+|+|+..... T Consensus 166 ~~~~~lqliepd~l~~~~n~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~hPgd~~~~~~~~~~~~~rvpa~~vlH~f~~~r 245 (505) T protein:vir:96 166 KWGYALQILECDRLDLNYNADLQNGNRIRMSIELDAWERPVAYHLLVNHPGDNSYCYHYAGQTYERVPADEIIHTFVPWR 245 (505) T ss_pred CcceEEEEechhhcCCCCCcccCCcCeEEeceEECCCCceEEEEEeecCCCccccccccccccccccCHhHhhhhhcccC Confidence 356789999999885433 2233333343322111 112345689999999998888 Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH-HHHHHHHHHHhccccCCceeeccCCceE Q lcl|Aclame:pro 174 DGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD-KDKASRSRSFMKRSRSGGPVVLDDLEEF 252 (392) Q Consensus 174 ~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~vl~~g~~~ 252 (392) .+...|+|.+..+...+.......+....-.+=.+...++|+.+.+..... ... .......-..|.+..|..|.++ T Consensus 246 ~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~---~~~~~~~l~pG~i~~L~pGe~i 322 (505) T protein:vir:96 246 PHQNRGIPWTHASMVELHHIGEYRKSEMIAAELGAKKVGFYEQDPEAYDQPPEDD---QGEIVEEVEAGTYQLLPYGIRF 322 (505) T ss_pred CccccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCccCCCccccc---cCccccccCCceeeecCCCCee Confidence 888999999999988887766666655555555556677888654322111 100 0011112345778889999999 Q ss_pred EeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCC-ccc-ccchH-HHHHHH-------HHHHHHHHHHHHHHH-HHHH Q lcl|Aclame:pro 253 TALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGG-QGD-QQSSI-QQISGM-------YASALNRYLRPAISE-LEYK 321 (392) Q Consensus 253 ~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~-~~~-~~~~~-~~~~~~-------~~~~l~p~l~~i~~~-l~~~ 321 (392) +.++.+-....|.+..+...+.||+.+|||.+.|-+ .++ ++|+. .....+ -..++.+++++|-++ |+.. T Consensus 323 ~~~~~~~p~~~~~~f~~~~lr~iaaglgi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~~l~~a 402 (505) T protein:vir:96 323 KEHKIDHPHTNFGAFVKSSLRGVAAGMGPAYNRLAHDLEGVNFSSLRSGELDERDLYKLLQFFVVTELLERVAGNLISMS 402 (505) T ss_pred eeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 999887666788999999999999999999998843 222 23321 111111 113334466654443 4433 Q ss_pred hhh-hhc---cchhhhh----------hcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccccc----------cc Q lcl|Aclame:pro 322 LSD-HIS---VNMRPAI----------DPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPA----------PE 377 (392) Q Consensus 322 l~~-~~~---~d~~~~~----------~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~----------~~ 377 (392) +.. .+. ++..... -.|+..-+.....++++|+.|+-++-. ..|..+.++-+ .- T Consensus 403 ~l~G~i~~p~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~t~~~~~a---~~G~D~~~v~~q~a~e~~~~~~~ 479 (505) T protein:vir:96 403 LLTQALPLNMVDIDRLSQYAFQPRGWDWVDPAKDSKAHSESIKNRTRSRSSIIR---AAGDDPEDVFDEIAWEEQLMRDK 479 (505) T ss_pred HHcCCcCCCCccchhhceeeeccCCccccChHHHHHHHHHHHHcCCCCHHHHHH---HcCCCHHHHHHHHHHHHHHHHHc Confidence 321 111 1111111 136677778888999999999987533 23544433210 00 Q ss_pred CCCCCC------C---CCCCCCCC Q lcl|Aclame:pro 378 NTNKKT------T---GQSNEPVP 392 (392) Q Consensus 378 ~~~~~~------~---gd~~~p~p 392 (392) ++.+.. . .++..+++ T Consensus 480 Gl~~~~~~~~~~~~~~~~~~~~~~ 503 (505) T protein:vir:96 480 GVNPTPPEQESKDATTDEEDDSAS 503 (505) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC Confidence 111110 0 01111111 No 126 >protein:vir:3420 Length: 533 # NCBI annotation: capsid component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040583;genbank:gi:9626247;genbank:GeneID:2703526 Probab=99.51 E-value=5.8e-13 Score=87.68 Aligned_cols=389 Identities=10% Similarity=0.026 Sum_probs=205.9 Q ss_pred CcchhhhhhcccccccccccccccccC--cchhhhhhhcc--CCCC----------cccchhhhhcchHHHHHHHHHHHh Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPD--GNDAQIMESLL--GDNN----------EWVSARAALRNSDLFSIILQLSSD 66 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~----------~~~~~~~al~~~~v~~~i~~ia~~ 66 (392) |.|--+-................+... .....+..|.. .... ..-+.+-+-.++.+.+||+.+... T Consensus 1 ~~~p~~~~~~~~~~~~~~~~~~~y~~~a~~~~~~~~~w~p~~~s~~~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~~~n 80 (533) T protein:vir:34 1 MKTPTIPTLLGPDGMTSLREYAGYHGGGSGFGGQLRSWNPPSESVDAALLPNFTRGNARADDLVRNNGYAANAIQLHQDH 80 (533) T ss_pred CCCchhhhhhcccccchHHHHHhhhhccCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH Confidence 666644322221111111000111000 00000001110 0000 011222233468899999988877 Q ss_pred hhhCceeeecc-----------h-----------hhhhcccCC------ccCCHHHHHHHHHHHHHHhCCeeEEEecccC Q lcl|Aclame:pro 67 LAIVKINAEKK-----------K-----------NQGIIDNPS------TNANKHGFWQSMFAQLLLGGEAFAYRWRNAN 118 (392) Q Consensus 67 ia~lp~~~~~~-----------~-----------~~~~~~~PN------~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~ 118 (392) |-.--+.+.-+ . ...+.+.|+ ..++.+++.+.++..++..|++|+.+.+... T Consensus 81 vVG~Gi~~~~~p~~~~lg~~~~~~~~~~~~ie~~w~~w~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~~~~~~~ 160 (533) T protein:vir:34 81 IVGSFFRLSHRPSWRYLGIGEEEARAFSREVEAAWKEFAEDDCCCIDVERKRTFTMMIREGVAMHAFNGELFVQATWDTS 160 (533) T ss_pred hhCCCceeeeccchhhcCCChhHHHHHHHHHHHHHHHhhcCccceeccccccCHHHHHHHHHHHHHhCCceEEEeeeccC Confidence 74445544321 0 112234454 3468899999999999999999999875433 Q ss_pred -C--ceeEEEEeccccceeee--------------cCCCceEEEEEEecCCc---------ceeeEEEecceEEEecCCC Q lcl|Aclame:pro 119 -G--ADMKWEYLRPSQVNTYY--------------FEYENGMYYNITFDDPK---------IEPILQAPQSDLIHMKLLS 172 (392) Q Consensus 119 -G--~~~~l~~l~~~~v~~~~--------------~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~vih~~~~~ 172 (392) | .+..|..|+|+.+.... |..|..+.|.+...... ......++..+|+|+.... T Consensus 161 ~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v~a~~VlH~f~~~ 240 (533) T protein:vir:34 161 SSRLFRTQFRMVSPKRISNPNNTGDSRNCRAGVQINDSGAALGYYVSEDGYPGWMPQKWTWIPRELPGGRASFIHVFEPV 240 (533) T ss_pred CCCccceEEEEechhhcCCCCCCCCCCceEeeeEECCCCCeEEEEEeecCCCCccccccceeeeeeccChhHeeeecccc Confidence 3 36788999998876533 22333333333221111 0112346788999999888 Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH-------------HHH---HHHHHHHhc Q lcl|Aclame:pro 173 IDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD-------------KDK---ASRSRSFMK 236 (392) Q Consensus 173 ~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~-------------~~~---~~~~~~~~~ 236 (392) ..+...|+|.+..+...+.....-......-.+-.+.-.++++.+.+..... ... ......+.+ T Consensus 241 r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (533) T protein:vir:34 241 EDGQTRGANVFYSVMEQMKMLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFILGANSQEQRERLTGWIGEIAAYYAA 320 (533) T ss_pred CCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeeecCCCcccccccccCCCcccccccccccchhhhhccCc Confidence 8888999999999988887776666666555555566677777653221110 000 011111111 Q ss_pred ---cccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCc-cc-ccchH-HHH-------HHHH Q lcl|Aclame:pro 237 ---RSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQ-GD-QQSSI-QQI-------SGMY 303 (392) Q Consensus 237 ---~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~-~~-~~~~~-~~~-------~~~~ 303 (392) .-..|.+..|..|.+++.++.+-...+|.+..+...+.||+.+|||.+.|-+. ++ ++|+. ... +..- T Consensus 321 ~~~~l~pG~i~~L~pGe~i~~~~~~~p~~~~~~f~~~~lr~iAaglGi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q 400 (533) T protein:vir:34 321 APVRLGGAKVPHLMPGDSLNLQTAQDTDNGYSVFEQSLLRYIAAGLGVSYEQLSRNYAQMSYSTARASANESWAYFMGRR 400 (533) T ss_pred ceeeccCceeeecCCCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhcccccHHHHHHHHHHHHHHHHHHH Confidence 12356788899999999988876667888999999999999999999988442 22 23322 111 1112 Q ss_pred HHHHHHHHHHHHHH-HHHHhhh-hhc--------cch--hhhh----------hcChHHHHHHHHHHHhCCccCHHHHHH Q lcl|Aclame:pro 304 ASALNRYLRPAISE-LEYKLSD-HIS--------VNM--RPAI----------DPLGDNYLSTISTATRWGALAENQATF 361 (392) Q Consensus 304 ~~~l~p~l~~i~~~-l~~~l~~-~~~--------~d~--~~~~----------~~~~~~~~~~~~~~~~~g~~t~nE~R~ 361 (392) ..++.+++++|-+. |+..+.. .+. +.. .... -.|+..-......++++|+.|+-|+-. T Consensus 401 ~~~~~~~~~pi~~~wl~~ail~G~i~~p~~~~~~~~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a 480 (533) T protein:vir:34 401 KFVASRQASQMFLCWLEEAIVRRVVTLPSKARFSFQEARSAWGNCDWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECA 480 (533) T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcccCCCccCCCchhhHHhhhceeeccCCccccChHHHHHHHHHHHHcCCCCHHHHHH Confidence 23444555555443 3333321 111 111 1111 126666777888999999999987543 Q ss_pred HH------------------HhCCCCCcccccccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 362 VL------------------QEAGYIPKDLPAPENTNKKTTGQSNEPVP 392 (392) Q Consensus 362 ~l------------------~~~g~~~~e~~~~~~~~~~~~gd~~~p~p 392 (392) .. .+.|+.++..+... +..+..+.++-| T Consensus 481 ~~G~D~~ev~~q~a~e~~~~~~~gl~~~~~~~~~---~~s~~~~~~~~~ 526 (533) T protein:vir:34 481 KRGDDYQEIFAQQVRETMERRAAGLKPPAWAAAA---FESGLRQSTEEE 526 (533) T ss_pred HcCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcC---ccCCCCCCCCCC Confidence 21 12233322222111 111111111222 No 127 >protein:vir:1986 Length: 512 # NCBI annotation: Hypothetical protein # Family: family:all:313 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050633;genbank:gi:9633520;genbank:GeneID:2636304 Probab=99.50 E-value=1e-12 Score=86.30 Aligned_cols=368 Identities=12% Similarity=-0.005 Sum_probs=201.9 Q ss_pred cchhhhhhccccccccc-----c---cccccc-----cCcchhhhhhhccCCCCcccch------hhhhcchHHHHHHHH Q lcl|Aclame:pro 2 ILPILNFINQTNDPPEA-----G---SVQSYF-----PDGNDAQIMESLLGDNNEWVSA------RAALRNSDLFSIILQ 62 (392) Q Consensus 2 ~Mg~~n~~~~~~~~~~~-----~---~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~------~~al~~~~v~~~i~~ 62 (392) .-.|++...+....... . .....+ ..++-......+....+..+.. +...+.+.|.+|++. T Consensus 1 m~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iL~~a~~gd~~~~~~L~~dm~~~D~hi~s~l~~ 80 (512) T protein:vir:19 1 MGRILDISGQPFDFDDEMQSRSDELAMVMKRTQEHPSSGVTPNRAAQMLRDAERGDLTAQADLAFDMEEKDTHLFSELSK 80 (512) T ss_pred CcceeCCCCCccccccccccccchhcccchhhccccccCCCHHHHHHHHHHhhCCCHHHHHHHHHHHHhhChHHHHHHHH Confidence 12334433332211100 0 000000 1111111111111111112221 122357889999999 Q ss_pred HHHhhhhCceeeecchh-----h-------h-hcccCCccCCHHHHHHHHHHHHHHhCCeeEEEeccc---CCceeEEEE Q lcl|Aclame:pro 63 LSSDLAIVKINAEKKKN-----Q-------G-IIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNA---NGADMKWEY 126 (392) Q Consensus 63 ia~~ia~lp~~~~~~~~-----~-------~-~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~---~G~~~~l~~ 126 (392) +-..|.+++|.+..... . . +...| ...++++.+. +..++|-+..++++.. ...|..+.+ T Consensus 81 Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~----~f~~~~~~ll-dA~~~G~s~~Ei~w~~~~g~~~~~~~~~ 155 (512) T protein:vir:19 81 RRLAIQALEWRIAPARDASAQEKKDADMLNEYLHDAA----WFEDALFDAG-DAILKGYSMQEIEWGWLGKMRVPVALHH 155 (512) T ss_pred HHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcCC----CHHHHHHHHH-hhhhhcceeeeeEeeeeCCceeeeeeee Confidence 99999999999863211 1 1 12233 3667777776 4678999999987633 345778999 Q ss_pred eccccceeeecCCCceEEEEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHc Q lcl|Aclame:pro 127 LRPSQVNTYYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNS 206 (392) Q Consensus 127 l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~n 206 (392) .++.++.+..+....... .++... ...++...++..++....+..+|.|.+..+.-....-....++...|.+. T Consensus 156 r~~~~f~~~~~~~~~lr~----~~~~~~--G~~l~~~k~i~~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~ 229 (512) T protein:vir:19 156 RDPALFCANPDNLNELRL----RDASYH--GLELQPFGWFMHRAKSRTGYVGTNGLVRTLIWPFIFKNYSVRDFAEFLEI 229 (512) T ss_pred eccccceeccCCCcEEEe----cCCCCC--ceeecCCceEEEeccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 999888765443222111 111122 24567676666666666677899999999999999999999999999999 Q ss_pred cCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeeccCCceEEeccCC-hhhHHHHHHHHHHHHHHHHHhcccHHH Q lcl|Aclame:pro 207 SLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIK-SNVAQLLSQTDWTSKQYAKVYGLPDSY 285 (392) Q Consensus 207 g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~-~~d~~~~e~~~~~~~~Ia~~fgVP~~~ 285 (392) -|.|--+.+++.+.+++++. ...+......+ ...++++.|++++=+..+ .....|.+..++..++|+.+ + T Consensus 230 yG~P~~igky~~~a~~~ek~--~L~~al~~~~~-~a~~iiP~~~~ie~~ea~~~~~~~y~~li~~~d~~Isk~------i 300 (512) T protein:vir:19 230 YGLPMRVGKYPTGSTNREKA--TLMQAVMDIGR-RAGGIIPMGMTLDFQSAADGQSDPFMAMIGWAEKAISKA------I 300 (512) T ss_pred cCCCeeEEecCCCCCHHHHH--HHHHHHHHHhh-CcEEEecCCceEEEeecCCCCHHHHHHHHHHHHHHHHHH------H Confidence 99999899988765544432 22222222111 235677777766555432 23334788888899999887 4 Q ss_pred cCCccc--c--c---chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccchh----------hhh----hcChHHHHH Q lcl|Aclame:pro 286 IGGQGD--Q--Q---SSIQQISGMYASALNRYLRPAISELEYKLSDHI-SVNMR----------PAI----DPLGDNYLS 343 (392) Q Consensus 286 lg~~~~--~--~---~~~~~~~~~~~~~l~p~l~~i~~~l~~~l~~~~-~~d~~----------~~~----~~~~~~~~~ 343 (392) +|.+.+ . + +..+-......+.+.-.++.|++.||+.|.+.+ .++.. ..+ ..|.+..+. T Consensus 301 LGqtlTs~~g~~Gs~a~~~vh~ev~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~~~~~~p~~~f~~~e~eDl~~~a~ 380 (512) T protein:vir:19 301 LGGTLTTEAGDKGARSLGEVHDEVRREIRNADVGQLARSINRDLIYPLLALNSDSTIDINRLPGIVFDTSEAGDITALSD 380 (512) T ss_pred hhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEecCCChhhHHHHHH Confidence 654311 1 1 111223445567778899999999998876432 22211 011 123344556 Q ss_pred HHHHHHhCCccCHHHHHHHHHhCCCC-Cc-c--cccccCCCCCCCCCCC-----CCCC Q lcl|Aclame:pro 344 TISTATRWGALAENQATFVLQEAGYI-PK-D--LPAPENTNKKTTGQSN-----EPVP 392 (392) Q Consensus 344 ~~~~~~~~g~~t~nE~R~~l~~~g~~-~~-e--~~~~~~~~~~~~gd~~-----~p~p 392 (392) .+..+..+--++..++|+.+ |++ |. + +......++..++... +..| T Consensus 381 ~~~~l~~G~~i~~~~i~e~~---Gip~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (512) T protein:vir:19 381 AIPKLAAGMRIPVSWIQEKL---HIPQPVGDEAVFTIQPVVPDNGSQKEAALSAEDIP 435 (512) T ss_pred HHHHHhcCCCCCHHHHHHHh---CCCCCCCccccccCCCccccccccccccccccCCC Confidence 66666544457888888876 443 11 1 1111111111111000 0111 No 128 >protein:vir:79511 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468055;genbank:gi:157265497;genbank:GeneID:5600628 Probab=99.48 E-value=7.7e-13 Score=86.99 Aligned_cols=372 Identities=14% Similarity=0.069 Sum_probs=193.0 Q ss_pred Ccchhhhhhccccc-cccccccccccc----------------CcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHH Q lcl|Aclame:pro 1 MILPILNFINQTND-PPEAGSVQSYFP----------------DGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQL 63 (392) Q Consensus 1 m~Mg~~n~~~~~~~-~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~i 63 (392) |+=+- ++... .+.......... .........-+....+..+ -+..++.+.|.+|++.+ T Consensus 1 m~k~~----~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iLr~~~~~~l-y~~m~~D~hi~s~l~~R 75 (448) T protein:vir:79 1 MAKRG----RKPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELLQGKDGLLV-YHKMLSDGTVKNALNYI 75 (448) T ss_pred CCCCC----CCCccccCcccccccccchhhhhhhhhhcccccccccccchhHhhccccchHH-HHHHhhChHHHHHHHHH Confidence 32111 11100 011001100000 0000000000111111111 13345578899999999 Q ss_pred HHhhhhCceeeecchh-----------hhhcccCCc---cCCHHHHHHHHHHHHHHhCCeeEEEecc--cCCc--eeEEE Q lcl|Aclame:pro 64 SSDLAIVKINAEKKKN-----------QGIIDNPST---NANKHGFWQSMFAQLLLGGEAFAYRWRN--ANGA--DMKWE 125 (392) Q Consensus 64 a~~ia~lp~~~~~~~~-----------~~~~~~PN~---~~t~~~f~~~~~~~l~l~G~a~~~i~r~--~~G~--~~~l~ 125 (392) -..|.+++|.+..... ...+..++. ..++.+++..+.. ..++|.++.++++. .+|+ +..+. T Consensus 76 k~av~~~~w~v~p~~~~~~~~~~ae~v~~~l~~~~~~~~~~~f~~~~~~~ld-a~~~G~s~~Eivw~~~~~g~~~~~~l~ 154 (448) T protein:vir:79 76 FGRIRSAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIYEN-AYIYGMAAGEIVLTLGADGKLILDKIV 154 (448) T ss_pred HHHHhcCCceEecCCCCHHHHHHHHHHHHHhhhhhhhhccCCHHHHHHHHHH-hhhhcceeEEEEeeecCCCceeccccc Confidence 9999999999953211 112333332 2355666666654 66899999999864 3564 44566 Q ss_pred Eeccccce-eeecCCCceEEEEEEecC---CcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 126 YLRPSQVN-TYYFEYENGMYYNITFDD---PKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTI 201 (392) Q Consensus 126 ~l~~~~v~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~ 201 (392) +.++..+. +..+.+++.......... ........+|..-++|..+. ..+..+|.|.+..+.-....-....++.. T Consensus 155 ~r~~~~~~~f~~~~d~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~-~~g~p~g~gLlr~~~w~~~fK~~~~~~w~ 233 (448) T protein:vir:79 155 PIHPFNIDEVLYDEEGGPKALKLSGEVKGGSQFVSGLEIPIWKTVVFLHN-DDGSFTGQSALRAAVPHWLAKRALILLIN 233 (448) T ss_pred ccCCccccceeeecCCceEEeecCCcccccccCCCccccccceEEEEecC-ccCCcccchhHHHHHHHHHHHHHHHHHHH Confidence 66665332 333444444433221100 00112346678888888664 55667899999999999998999999999 Q ss_pred HHHHccCCcceEEeeCCCCCchHHHHHHHHH---HHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 202 SSLNSSLNVPGVLTVKGGGLLSDKDKASRSR---SFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKV 278 (392) Q Consensus 202 ~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~ 278 (392) .|.+.-|.|--+.+.+.+.+..++.++...+ .+....++ .++++.|++++-++.+....++.+..++..++|+.+ T Consensus 234 ~f~E~yG~P~~vgky~~ga~~~~~~~~~l~~av~~i~~g~~a--~~iiP~~~~ie~~ea~~~~~~~~~~i~~~d~~Isk~ 311 (448) T protein:vir:79 234 HGLERFMIGVPTLTIPKSVRQGTKQWEAAKEIVKNFVQKPRH--GIILPDDWKFDTVDLKSAMPDAIPYLTYHDAGIARA 311 (448) T ss_pred HHHHHcCCceEEEecCCCCCcCHHHHHHHHHHHHHHhcCCce--EEEecCCceEEEEecCCCcccHHHHHHHHHHHHHHH Confidence 9999999998899988765544333333322 22222333 467888888776665544455677888888888765 Q ss_pred hcccHHHcCCccc--c---cchHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccchhh-----------hhhcChH Q lcl|Aclame:pro 279 YGLPDSYIGGQGD--Q---QSSIQ--QISGMYASALNRYLRPAISELEYKLSDHI-SVNMRP-----------AIDPLGD 339 (392) Q Consensus 279 fgVP~~~lg~~~~--~---~~~~~--~~~~~~~~~l~p~l~~i~~~l~~~l~~~~-~~d~~~-----------~~~~~~~ 339 (392) . ||.+.+ . .++.+ .......+.+.-.++.|++.+|+.|.+.+ .+++.. .-..|.. T Consensus 312 i------LGqtlTs~~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~li~~l~~lNfg~~~~~P~~~f~~~e~~Dl~ 385 (448) T protein:vir:79 312 L------GIDFNTVQLNMGVQAINIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLPNWPSATRFPRLTFEMEERNDFS 385 (448) T ss_pred H------hhhhhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcEEEecCCChHHHH Confidence 4 443211 1 11111 11234456677888999999998876432 222110 0112334 Q ss_pred HHHHHHHHHHhCCccCHHHHHHHHHhCCCC---CcccccccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 340 NYLSTISTATRWGALAENQATFVLQEAGYI---PKDLPAPENTNKKTTGQSNEPVP 392 (392) Q Consensus 340 ~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~---~~e~~~~~~~~~~~~gd~~~p~p 392 (392) .+++.+..++..+-...+-.|+.+ |.+ |.+.+......+..+ +..+-| T Consensus 386 ~~a~~~~~l~~~~~~~~~~~~~~~---~~p~~~~~~~~~a~~~~~~~~--~~~~~~ 436 (448) T protein:vir:79 386 AAANLMGMLINAVKDSEDIPTELK---ALIDALPSKMRRALGVVDEVR--EAVRQP 436 (448) T ss_pred HHHHHhhhhhccchhhHHHHHHhh---cCCCCCCCccccccCCCCccc--ccccCC Confidence 456666666654422222234432 222 111111111111111 112222 No 129 >protein:vir:6382 Length: 553 # NCBI annotation: portal protein Lambda B # Family: family:all:47 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918995;genbank:gi:34610170;genbank:GeneID:2559575 Probab=99.45 E-value=1.8e-12 Score=85.00 Aligned_cols=391 Identities=8% Similarity=-0.024 Sum_probs=199.4 Q ss_pred cchhhh-hhccc----ccccccccccccccCcc-hhhhhhhccCC--CCc----------ccchhhhhcchHHHHHHHHH Q lcl|Aclame:pro 2 ILPILN-FINQT----NDPPEAGSVQSYFPDGN-DAQIMESLLGD--NNE----------WVSARAALRNSDLFSIILQL 63 (392) Q Consensus 2 ~Mg~~n-~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~----------~~~~~~al~~~~v~~~i~~i 63 (392) +|.--. .+... .........+.+..-.. ......|.... ... .-+.+-+..++.+.++|+.+ T Consensus 1 m~~~~~r~~~~~a~~~~~~~~~~~~~~y~gA~~~~r~~~~w~~~~~s~~~~~~~~~~~lr~RaRdL~rNn~~a~~av~~~ 80 (553) T protein:vir:63 1 MTKVTVRKLSEVTSGRPEQSASLGGGGLEGASRLSRETVSWNPSLRSPDALINPLKRIADARGRDMADNDGFTNGAVGYQ 80 (553) T ss_pred CcchhhhhhcccccccchhhhhhhcccccccccCCCcccccccCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH Confidence 111110 11100 00000000011100000 00011111100 000 11122233468889999988 Q ss_pred HHhhhhCceeeecc------------h-----------hhhhcccCC------ccCCHHHHHHHHHHHHHHhCCeeEEEe Q lcl|Aclame:pro 64 SSDLAIVKINAEKK------------K-----------NQGIIDNPS------TNANKHGFWQSMFAQLLLGGEAFAYRW 114 (392) Q Consensus 64 a~~ia~lp~~~~~~------------~-----------~~~~~~~PN------~~~t~~~f~~~~~~~l~l~G~a~~~i~ 114 (392) ...|-.--+.+.-+ . ...+.+.|| -.++.+++...++..++..|++|+.+. T Consensus 81 ~~nvVG~Gi~~~~~~~~~~l~g~~~~~~~~~~~~ie~~w~~wa~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~~~ 160 (553) T protein:vir:63 81 RDSIVGAQYRLNSMPDINVIPGATEEWAEEYQTIVEAKFELYAESLACYIDNAAISTFTGLIRLGVVGYVKTGEVLATAE 160 (553) T ss_pred HHhhccCCceeeeccchhhhcCCCHHHHHHHHHHHHHHHHHhcCCccceeeccccCCHHHHHHHHHHHHHhCCceEEEee Confidence 77664445554311 0 122334443 346888999999999999999999886 Q ss_pred cccC-C--ceeEEEEeccccceeeecC--------------CCceEEEEEEecCCcc--------------eeeEEEecc Q lcl|Aclame:pro 115 RNAN-G--ADMKWEYLRPSQVNTYYFE--------------YENGMYYNITFDDPKI--------------EPILQAPQS 163 (392) Q Consensus 115 r~~~-G--~~~~l~~l~~~~v~~~~~~--------------~~~~~~~~~~~~~~~~--------------~~~~~~~~~ 163 (392) .... | .+..|..|+|+++....+. .|..+.|.+...-+.. .....+++. T Consensus 161 ~~~~~~~~~~~~lq~ie~drl~~~~~~~~~~~i~~GVE~d~~Gr~vaY~i~~~hPgd~~~~~~~~~~~~r~~~~~~v~a~ 240 (553) T protein:vir:63 161 WDRAANRPYATCFQMVSTDRLSNPYQQLDTPTLRRGVQYDKRGRPQGYWIQVAHPGDLYQMAPDMYKWKFVQQSKPWGRR 240 (553) T ss_pred eccCCCCcccceEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEeeccCCCccccccccccceeeeccccccChh Confidence 4332 3 3567899999888654433 2233333322111110 112357899 Q ss_pred eEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHH---------------- Q lcl|Aclame:pro 164 DLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDK---------------- 227 (392) Q Consensus 164 ~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~---------------- 227 (392) +|||+......+...|+|.+..+...+............-.+=.+...++|+.+.+.....+.. T Consensus 241 ~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~daeL~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (553) T protein:vir:63 241 QVIHILEPREPDQSRGIADIVSGLKDMRMAKRFKEMSLQNAVINASYAAAIESELPPEFIHSQMSGGSPNADMVGIFGKY 320 (553) T ss_pred HheecccccCCCcccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCChhhhhhhccccccccccccccccc Confidence 9999998888888999999999988887766666555555555555677777654221111100 Q ss_pred -HHHHHHHhc----cccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCC-ccc-ccchH-HHH Q lcl|Aclame:pro 228 -ASRSRSFMK----RSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGG-QGD-QQSSI-QQI 299 (392) Q Consensus 228 -~~~~~~~~~----~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~-~~~-~~~~~-~~~ 299 (392) ........+ .-..|.+..|..|.+++-++.+-...+|.+..+...+.||+.+|||.+.|-+ .++ ++|+. ... T Consensus 321 ~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p~~~~~~F~~~~lr~iaaglGi~Ye~lt~D~s~~nYSS~R~~~ 400 (553) T protein:vir:63 321 MDALKAYVGGANNIQIDGAKIPHLFPGTKLNLKPMGTPGGVGSEFEASLNRHLASAFGMSYEEFTRDFSKANYSSIQAGI 400 (553) T ss_pred ccccccccccccceeecCceeeecCCCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhcccccHHHHHHHH Confidence 000011111 1235778889999999998887556678899999999999999999998843 222 23322 111 Q ss_pred HHH------HH-HHHHHHHHHHHH-HHHHHhhh-hhcc---------ch----hhhh----------hcChHHHHHHHHH Q lcl|Aclame:pro 300 SGM------YA-SALNRYLRPAIS-ELEYKLSD-HISV---------NM----RPAI----------DPLGDNYLSTIST 347 (392) Q Consensus 300 ~~~------~~-~~l~p~l~~i~~-~l~~~l~~-~~~~---------d~----~~~~----------~~~~~~~~~~~~~ 347 (392) ..+ .+ .++..++++|-+ .|+..+.. .+.+ +. .... -.|+..-...... T Consensus 401 ~e~~r~~~~~q~~~~~~~~~pi~~~wl~~a~l~G~i~~p~~~~~~~~~~p~~~~a~~~~~w~~p~~~~iDP~Ke~~A~~~ 480 (553) T protein:vir:63 401 AMTRRFLEGRKKMCADRLATEFFTLWLEEAIAAGEVPMPPGQTRDLFYQPLMKEALSKCEWIGASQGQIDQLKETQAAVM 480 (553) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccchhhcchhhhhhhhceeeecCCccccChHHHHHHHHH Confidence 111 11 233345554433 23333322 1110 00 0011 1366667788889 Q ss_pred HHhCCccCHHHHHHHH------------------HhCCCCCcccccccCCC--CCCCCCCCCCCC Q lcl|Aclame:pro 348 ATRWGALAENQATFVL------------------QEAGYIPKDLPAPENTN--KKTTGQSNEPVP 392 (392) Q Consensus 348 ~~~~g~~t~nE~R~~l------------------~~~g~~~~e~~~~~~~~--~~~~gd~~~p~p 392 (392) .+++|+.|+-++-... .+.|++.+-.+...... ....+.++.|.+ T Consensus 481 ~i~~G~~t~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (553) T protein:vir:63 481 RIDAGLSTYEREIARLGGDFRKSFAQRAREDALLKKYGLTFNLSAKRSLGDGRDAATGIAEDPAA 545 (553) T ss_pred HHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCcccCCCCCCCCCC Confidence 9999999998753322 12333321111111000 011111111111 No 130 >protein:vir:77981 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467939;genbank:gi:157265380;genbank:GeneID:5600471 Probab=99.44 E-value=3.3e-12 Score=83.54 Aligned_cols=369 Identities=14% Similarity=0.060 Sum_probs=192.3 Q ss_pred chhhhhhccccccccccc-----cccc-----------cc-----CcchhhhhhhccCCCCcccchhhhhcchHHHHHHH Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGS-----VQSY-----------FP-----DGNDAQIMESLLGDNNEWVSARAALRNSDLFSIIL 61 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~-----~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~ 61 (392) |- ++.++++... .... +. ...-.....-+....+..+ -+..+..+.|.+|++ T Consensus 1 m~------kk~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iLr~~~~~~l-y~~m~~D~hi~s~l~ 73 (448) T protein:vir:77 1 MA------KRGRKPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELLQGKDGLLV-YHKMLSDGTVKNALN 73 (448) T ss_pred CC------CCCCCCcccCCcccccchhhhhhhccchhhhcccccccccccchhHhhccccchHH-HHHHhhChHHHHHHH Confidence 22 2222221110 0000 00 0000000001111111111 133455788999999 Q ss_pred HHHHhhhhCceeeecchhh-----------hhcccC---CccCCHHHHHHHHHHHHHHhCCeeEEEecc--cCCc--eeE Q lcl|Aclame:pro 62 QLSSDLAIVKINAEKKKNQ-----------GIIDNP---STNANKHGFWQSMFAQLLLGGEAFAYRWRN--ANGA--DMK 123 (392) Q Consensus 62 ~ia~~ia~lp~~~~~~~~~-----------~~~~~P---N~~~t~~~f~~~~~~~l~l~G~a~~~i~r~--~~G~--~~~ 123 (392) .+-..|.+++|.+...... ..+..+ ....++.+++..+. +.+++|-++.+++.. .+|. +.. T Consensus 74 ~Rk~av~~~~w~v~p~~~~~~d~~~ae~v~~~l~~~~~~~~~~~f~~~i~~~l-da~~~G~s~~Eivw~~~~dg~~~~~~ 152 (448) T protein:vir:77 74 YIFGRIRSAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIYE-NAYIYGMAAGEIVLTLGADGKLILDK 152 (448) T ss_pred HHHHHHhcCCceEecCCCCHHHHHHHHHHHHHhhchhhhhccCCHHHHHHHHH-HhhhhcceeEEEEEeecCCCceeecc Confidence 9999999999998632110 112222 22346777888775 678999999999864 3564 445 Q ss_pred EEEeccccce-eeecCCCceEEEEEEec--C-CcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 124 WEYLRPSQVN-TYYFEYENGMYYNITFD--D-PKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRL 199 (392) Q Consensus 124 l~~l~~~~v~-~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~ 199 (392) +.+.++..+. +..+.+++.......-. . ........+|...++|..+. ..+..+|.|.+..+.-....-....++ T Consensus 153 l~~r~~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~-~~g~p~g~gLlr~~~w~~~fK~~~~~~ 231 (448) T protein:vir:77 153 IVPIHPFNIDEVLYDEEGGPKALKLSGEVKGGSQFVNGLEIPIWKTVVFLHN-DDGSFTGQSALRAAVPHWLAKRALILL 231 (448) T ss_pred ccccCCCccceeeeecCCceEEEecCCcccccccCCCccccccceEEEEecC-CcCCcccchHHHHHHHHHHHHHhhHHH Confidence 6666664332 23344444433221110 0 01112346688888888764 456678999999999988888889999 Q ss_pred HHHHHHccCCcceEEeeCCCCCchHHHHHHHH---HHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 200 TISSLNSSLNVPGVLTVKGGGLLSDKDKASRS---RSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYA 276 (392) Q Consensus 200 ~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia 276 (392) ...|.+.-|.|--+.+.+.+.+..++.++... ..+....++ .++++.|++++=++.+....++.+..++..++|+ T Consensus 232 w~~f~E~yG~P~~vgky~~ga~~~~~~~~~l~~av~~i~~g~~a--~~iiP~g~~ie~~ea~~~~~~~~~~i~~~d~~Is 309 (448) T protein:vir:77 232 INHGLERFMIGVPTLTIPKSVRQGTKQWEAAKEIVKNFVQKPRH--GIILPDDWKFDTVDLKSAMPDAIPYLTYHDAGIA 309 (448) T ss_pred HHHHHHHcCCceeEEecCCCCCCCHHHHHHHHHHHHHHhcCCce--EEEecCCceEEEEecCCCccCHHHHHHHHHHHHH Confidence 99999999999999998876554433333322 223222333 4678888876666554444556677888888888 Q ss_pred HHhcccHHHcCCcccccchH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccchhh-------hh----hcChHHHHH Q lcl|Aclame:pro 277 KVYGLPDSYIGGQGDQQSSI-QQISGMYASALNRYLRPAISELEYKLSDHI-SVNMRP-------AI----DPLGDNYLS 343 (392) Q Consensus 277 ~~fgVP~~~lg~~~~~~~~~-~~~~~~~~~~l~p~l~~i~~~l~~~l~~~~-~~d~~~-------~~----~~~~~~~~~ 343 (392) .+..-.---.+..+.+.+.. ........+.+.-.++.|++.||+.|.+.+ .+++.. .+ ..|...+++ T Consensus 310 k~iLGqtlTs~~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~Li~~l~~lNfg~~~~~P~~~f~~~e~eDl~~~a~ 389 (448) T protein:vir:77 310 RALGIDFNTVQLNMGVQAVNIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLPNWPGATRFPRLTFEMEERNDFSAAAN 389 (448) T ss_pred HHHhccccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEecCCChhhHHHHHH Confidence 76422111111111111111 122234556677888999999998886532 222110 01 113334455 Q ss_pred HHHHHHhCCccCHHHHHHHHHhCCCCC--cccccccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 344 TISTATRWGALAENQATFVLQEAGYIP--KDLPAPENTNKKTTGQSNEPVP 392 (392) Q Consensus 344 ~~~~~~~~g~~t~nE~R~~l~~~g~~~--~e~~~~~~~~~~~~gd~~~p~p 392 (392) .+..++ +-.|+.+ |++. .+.+....-.+.+.....+|.| T Consensus 390 ~~~~l~-------~~~~~~~---~ip~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (448) T protein:vir:77 390 LMGMLI-------NAVKDSE---DIPTELKALIDALPSKMRRALGVVDEVR 430 (448) T ss_pred HhHHHH-------HHHHHHh---cCCccCCcCCCCCchhcccccCCCCCCC Confidence 555554 2344443 4432 2222221111111111222222 No 131 >protein:vir:10321 Length: 495 # NCBI annotation: ORF23 # Family: family:all:47 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758916;genbank:gi:27311190;genbank:GeneID:956137 Probab=99.40 E-value=4.7e-12 Score=82.69 Aligned_cols=381 Identities=10% Similarity=0.049 Sum_probs=193.6 Q ss_pred chhhhhhccccccccc-----ccccccccCcchhhhhhhccCCC-C----------cccchhhhhcchHHHHHHHHHHHh Q lcl|Aclame:pro 3 LPILNFINQTNDPPEA-----GSVQSYFPDGNDAQIMESLLGDN-N----------EWVSARAALRNSDLFSIILQLSSD 66 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~al~~~~v~~~i~~ia~~ 66 (392) |.++ .+.-..+.. ...+.+..-.. ...+..+.+.+ . ..-+.+-+-.++.+..||+.+.+. T Consensus 1 m~~~---~~~~~a~~~~~~~~~~~~~y~aa~~-~~~~~~~~~~s~d~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~~~~ 76 (495) T protein:vir:10 1 MNMT---PSGYQSLASGLLVPVGASAYEGASG-GHRWQDIGDYGPDTAVASGIQTLRARSHHNVRNNPWATNAVATWVAA 76 (495) T ss_pred CCcc---cccccccchhhhhHHHhhhhhcccc-CcccCCCCCCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHh Confidence 4443 221111100 00000100000 00011111110 0 011122233468889999988877 Q ss_pred hhhCceeeecc-h-----------hhhhcccC--CccCCHHHHHHHHHHHHHHhCCeeEEEecc--cCC--ceeEEEEec Q lcl|Aclame:pro 67 LAIVKINAEKK-K-----------NQGIIDNP--STNANKHGFWQSMFAQLLLGGEAFAYRWRN--ANG--ADMKWEYLR 128 (392) Q Consensus 67 ia~lp~~~~~~-~-----------~~~~~~~P--N~~~t~~~f~~~~~~~l~l~G~a~~~i~r~--~~G--~~~~l~~l~ 128 (392) +-.--+...-+ + ...+.+++ ...++.+++.+.++..++..|++|+.+... ..| .+..|..|+ T Consensus 77 vVG~Gi~p~~~~~~~~~~~~ie~~w~~wa~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~~g~~~~~~lqlie 156 (495) T protein:vir:10 77 AVGNGLTPRWRMKEQELRQELQELWGDWVNEADFDEVQSFYGLQALVVRTVINSGEAFVIKKPRPLSEGLSVPLQLQIIE 156 (495) T ss_pred hcCCCcccccCCchHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHHhCCceEEEEeecccCCCCccceEEEEec Confidence 73334433211 1 11223333 345789999999999999999999987643 233 478899999 Q ss_pred cccceeeec-----------------CCCceEEEEEEecCCc-------ceeeEEEecceEEEecCCCccccccCCCHHH Q lcl|Aclame:pro 129 PSQVNTYYF-----------------EYENGMYYNITFDDPK-------IEPILQAPQSDLIHMKLLSIDGGKTGISPLY 184 (392) Q Consensus 129 ~~~v~~~~~-----------------~~~~~~~~~~~~~~~~-------~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~ 184 (392) |+++..-.+ ..|..+.|.+....++ ......+++++|+|+.. ...+...|+|.+. T Consensus 157 pd~l~~~~~~~~~~~g~~i~~GIe~d~~Gr~vaY~i~~~hpgd~~~~~~~~~~~rvpA~~vlH~f~-~r~gQ~RGis~la 235 (495) T protein:vir:10 157 PDMLASDIPDETLPSGGYVKGGIRFSNGGKRKAYCFYRNHPAESSLIGDPVDTVWIKAEHVLHVTV-LTVRSDAGAPWFQ 235 (495) T ss_pred hhhcCCCCCCCCCCCCCEEEeceEECCCCceEEEEEeecCCCcccccccccceeeechhheEeccc-cCCCcccCcchhH Confidence 998863221 2223333333222111 12346799999999964 4567789998765 Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHH----HHHHHHHHhccccCCceeeccCCceEEeccCChh Q lcl|Aclame:pro 185 SLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKD----KASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSN 260 (392) Q Consensus 185 ~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~ 260 (392) .+. .+............-.+=.+...++++.+......... ...........-..|.+..|..|.+++.++.+.. T Consensus 236 ~i~-~l~~l~~y~dael~~a~i~A~~~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p 314 (495) T protein:vir:10 236 LLL-RLNELDQYEDAELVRKKTAALFAAFIQEATADSTGGPTIGQPKRSKGGKRITGLNPGTLQYLQPGQEVKFSNPADV 314 (495) T ss_pred HHH-HHHHhhHHHHHHHHHHHHhhhheeeeecCCCccccccccCccccccCcccceecCCceeeecCCCCeeeeeCCCCC Confidence 443 34433333333333334444556777754332211110 0000000111224567889999999999887755 Q ss_pred hHHHHHHHHHHHHHHHHHhcccHHHcC-Cccc-ccchH-HHH----HHH--HH-HHHHH-HHHHHHH-HHHHHhhh-hhc Q lcl|Aclame:pro 261 VAQLLSQTDWTSKQYAKVYGLPDSYIG-GQGD-QQSSI-QQI----SGM--YA-SALNR-YLRPAIS-ELEYKLSD-HIS 327 (392) Q Consensus 261 d~~~~e~~~~~~~~Ia~~fgVP~~~lg-~~~~-~~~~~-~~~----~~~--~~-~~l~p-~l~~i~~-~l~~~l~~-~~~ 327 (392) -..|.+..+...+.||+.+|||.+.|- ..++ ++|+. ... +.+ .+ +.+.+ ++++|-+ .++..+.. .+. T Consensus 315 ~~~~~~f~~~~lr~iaaglGi~Ye~ltgD~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~~pi~~~~l~~a~l~G~i~ 394 (495) T protein:vir:10 315 GTTYEPWLRYQLLSIAKGYGITYEMLTGDLRGVNYSSIRAGLLEFRRLCQQVQHHMIIHQFCRPVGRWFMDFAVASGAVV 394 (495) T ss_pred CCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC Confidence 567889999999999999999999884 3222 23322 111 222 12 23333 5555443 34444332 111 Q ss_pred c-----chhh----------hhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccccc----------ccCC--- Q lcl|Aclame:pro 328 V-----NMRP----------AIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPA----------PENT--- 379 (392) Q Consensus 328 ~-----d~~~----------~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~----------~~~~--- 379 (392) + +... .--.|+..-+.....++++|+.|+-++-. +.|..+.++-+ .-++ T Consensus 395 ~p~~~~~~~~~~~~~w~~p~~~~vDP~Ke~~A~~~~i~~G~~s~~~~~a---~~G~D~~~v~~q~a~e~~~~~~~Gl~~~ 471 (495) T protein:vir:10 395 IPDYLQRRRYYNRVSWRTPRWEEVDPLKKHLADLGDVRAGFAPISDKQA---ERGYDMEELFDMISDANQLIDEYDLRLD 471 (495) T ss_pred CCCchhhhHhhhccccccCCccccChHHHHHHHHHHHHcCCCCHHHHHH---HcCCCHHHHHHHHHHHHHHHHHcCCCCC Confidence 1 0001 11136677778888999999999987533 23554433210 0011 Q ss_pred --CCC--CCCCCCCCCC Q lcl|Aclame:pro 380 --NKK--TTGQSNEPVP 392 (392) Q Consensus 380 --~~~--~~gd~~~p~p 392 (392) |.. ..|..+++.+ T Consensus 472 ~~p~~~~~~~~~~~~~~ 488 (495) T protein:vir:10 472 SDPRYVNGSGAEQKSVM 488 (495) T ss_pred CCCCcCCCccCCCCCCC Confidence 111 1133333333 No 132 >protein:vir:98816 Length: 446 # NCBI annotation: hypothetical protein # Family: family:all:32558 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851097;genbank:gi:117530254;genbank:GeneID:4484480 Probab=99.32 E-value=1.5e-11 Score=79.86 Aligned_cols=360 Identities=9% Similarity=0.016 Sum_probs=199.7 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhh------hhccCCCCcccch-----hhhh-cchHHHHHHHHHHHhhh Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIM------ESLLGDNNEWVSA-----RAAL-RNSDLFSIILQLSSDLA 68 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-----~~al-~~~~v~~~i~~ia~~ia 68 (392) |-|-+-|.=........+.. .....+. .++....|..+.. +..+ +.+.|.+|++.+...|. T Consensus 1 ~~~~~~~~p~~~~~~~~~~~-------~~~~~~~~g~~~~D~~lr~~gg~~~~~~~l~~~m~e~D~~v~s~l~~Rk~av~ 73 (446) T protein:vir:98 1 MNMEVRNAPTPAIRRRTIYA-------MEHLGLATSYLSEDGGYKRAGKPTYQQLSAWDEAAQTEPIIAQGLDSIALSVL 73 (446) T ss_pred CcccccCCCchhhhhhhhhc-------cccchhhcccCCcchHhhhcCCChHHHHHHHHHHHhcchHHHHHHHHHHHHhh Confidence 66664331100000011000 0000110 1111111211111 2223 47899999999999999 Q ss_pred hCceeeecchhh------hhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccC-C--ceeE----EEEeccccceee Q lcl|Aclame:pro 69 IVKINAEKKKNQ------GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNAN-G--ADMK----WEYLRPSQVNTY 135 (392) Q Consensus 69 ~lp~~~~~~~~~------~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~-G--~~~~----l~~l~~~~v~~~ 135 (392) +++|.+.-.+.. ..+... . .+.....+.+.+.+|.++.+++.... | .|.. +..+.|..+... T Consensus 74 ~~~w~V~p~~~~~a~~v~~~l~~~--~---~~~~~~~~ldai~~G~s~~Eivw~~~~g~~~p~~~~d~~~~~~~~~~r~~ 148 (446) T protein:vir:98 74 NKVGPYQHGDKRIKKFIDDQLRNR--A---KTWISHCVKSIMTYGFSLSEQIYAHGARDNMPATVLDDIVNYHPLQVMLI 148 (446) T ss_pred cCCceecCccHHHHHHHHHHHhhc--C---chhHHHHHHHHHhhCceeeeEEEeecccccccchhhccccccccccceee Confidence 999999643221 112211 1 12333346788889999999885422 2 1211 112222222222 Q ss_pred ecCCCceEEEEE----------------------EecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHH Q lcl|Aclame:pro 136 YFEYENGMYYNI----------------------TFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQ 193 (392) Q Consensus 136 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~ 193 (392) .+.++..+.... .......+..+.+|...++++++....+..+|.|.+..+.-....- T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iP~~kfi~~~~~~~~~~p~G~gLlr~~~w~~~fK 228 (446) T protein:vir:98 149 ANDNGRIVDGDTVTASQYKSGYWVPLPPYRIGDPPKKVDVVGSHVRLPSHKRLFINYNTKGNNPWGTSCLTSVLDYSIFK 228 (446) T ss_pred eccCCccccccccchhhcccccccCcccchhhhhhhhcccCcccccccccceEEEEecCCCCCccccchHHHHHHHHHHH Confidence 222221110000 0000112334568888888888877777789999999999999999 Q ss_pred HHHHHHHHHHHHccCCcceEEeeCCCCCchHH-------HH----HHHHHHHhccccCC-cee---eccCCceEEeccCC Q lcl|Aclame:pro 194 RASDRLTISSLNSSLNVPGVLTVKGGGLLSDK-------DK----ASRSRSFMKRSRSG-GPV---VLDDLEEFTALEIK 258 (392) Q Consensus 194 ~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~-------~~----~~~~~~~~~~~~~g-~~~---vl~~g~~~~~l~~~ 258 (392) ....+....|.+.-|.|--+.+.+.+.+.+++ .. +...+........+ .++ ++++|++++-++.. T Consensus 229 ~~~~~~w~~f~E~yG~P~~vGkyp~ga~~~~~~~~~~~~~~~~~~~~L~~av~~~~~da~~ii~~~~~P~g~eie~~ea~ 308 (446) T protein:vir:98 229 RAFRDMMLIALDRYGTPLIYVIVPPGNTGVVEEAPDGTEITTTIAEQAEDALRRLSTDSGLVLTQLSKEQPVQVGALTTG 308 (446) T ss_pred HhhHHHHHHHHhHcCCceeEEeecCCCCcccccchhHHHHHHHHHHHHHHHHHhccccceeeeecccCCCCceEEeeccc Confidence 99999999999999999999998765443221 11 12333333332222 222 24889988766553 Q ss_pred hh-hHHHHHHHHHHHHHHHHHhcccHHHcCCcccccch---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccchh-- Q lcl|Aclame:pro 259 SN-VAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSS---IQQISGMYASALNRYLRPAISELEYKLSDHI-SVNMR-- 331 (392) Q Consensus 259 ~~-d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~---~~~~~~~~~~~l~p~l~~i~~~l~~~l~~~~-~~d~~-- 331 (392) .. ...+.+..++..++|+.+.....-.+|...+...+ .+.......+.++-..+.|++.+|+.|.+.+ .++.. T Consensus 309 ~~~~~~~~~~i~~~d~~IskaiLg~~Ltl~~~~~~~GS~ala~vh~~V~~d~~~aDa~~i~~tln~~Li~~l~~lNf~~~ 388 (446) T protein:vir:98 309 NNFSDSFERAISLCDNNMLMGMGIPNLLVQNRETTFGTGRASEIQLELFDGKINSIFDTVIHAFTEQVIGNLIRLNFDPA 388 (446) T ss_pred cCChhhHHHHHHHHHHHHHHHHhcccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc Confidence 32 23478888999999999887766555543221111 1223345667788899999999999886532 22210 Q ss_pred ----------hhh----hcChHHHHHHHHHHHhCCccCHH---HHHHHHHhCCCCCcccccccCCC Q lcl|Aclame:pro 332 ----------PAI----DPLGDNYLSTISTATRWGALAEN---QATFVLQEAGYIPKDLPAPENTN 380 (392) Q Consensus 332 ----------~~~----~~~~~~~~~~~~~~~~~g~~t~n---E~R~~l~~~g~~~~e~~~~~~~~ 380 (392) ..+ ..|...+++.+..++..|+.+++ .+|+.+ |+++ .+.-. T Consensus 389 ~~~~~~~~~~~~~~~~e~eDl~~~a~~~~~L~~~G~~~p~~~~~ire~~---giP~-----~~~~~ 446 (446) T protein:vir:98 389 LYPLASNTGYITRLPGRATDLAALVEAIKQMHDMGFLVDGDKDHIRSIT---GLPD-----AISST 446 (446) T ss_pred ccccccccccceeccCChhhHHHHHHHHHHHHhCCccccccHHHHHHHh---CcCC-----CCCCC Confidence 001 13556678888999999987653 366655 5442 11111 No 133 >protein:vir:105782 Length: 449 # NCBI annotation: gp5 # Family: family:all:6783 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224143;genbank:gi:62362218;genbank:GeneID:3342535 Probab=99.25 E-value=2.3e-11 Score=78.89 Aligned_cols=362 Identities=11% Similarity=-0.013 Sum_probs=166.5 Q ss_pred Cc--------------------chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchh----hhhcchHH Q lcl|Aclame:pro 1 MI--------------------LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSAR----AALRNSDL 56 (392) Q Consensus 1 m~--------------------Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~al~~~~v 56 (392) |- |+|.|...+.-.... ..+..+ +. ...++-+ .+-+++.+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~rd~l~~~~~glg~~r~--------------~~~~~~-g~-~~~~~~~~l~~~Yr~~~ia 64 (449) T protein:vir:10 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRH--------------SAWCEY-GF-PELVTYENLYSLYRRGGIA 64 (449) T ss_pred CchhhHHHHhhhcchhHHHHHHHHHHHHHhcCCcccc--------------hhhhhc-CC-cccCCHHHHHHHHhcCchh Confidence 22 333332221110000 001111 00 0111111 12235678 Q ss_pred HHHHHHHHHhhh-hCceeeecchhh----------hhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEe-ccc------- Q lcl|Aclame:pro 57 FSIILQLSSDLA-IVKINAEKKKNQ----------GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRW-RNA------- 117 (392) Q Consensus 57 ~~~i~~ia~~ia-~lp~~~~~~~~~----------~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~-r~~------- 117 (392) ..+|+.++...- +.|..+ +.... ..+++-+...-+..+.+..-+ -.++|-+.+++. ++. T Consensus 65 ~~iVd~~~d~~~~~~~~i~-~g~~~~~~~~~~~~e~~~~~l~~~~~~~~l~ea~~~-~rl~Gga~i~i~v~d~~~l~~Pl 142 (449) T protein:vir:10 65 HGAVEKLVGKCWQTNPEII-EGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRR-RLVGRYAGILLHIRDEKDWNLPA 142 (449) T ss_pred HHHHHhhhhhhhhcCcccc-cCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCcEEEEEEecCCCCCCccc Confidence 888999987551 112211 11100 001111111111222222222 346777777653 332 Q ss_pred --CCceeEEEEeccccceeeec-------CCCceEEEEEEec-CCcceeeEEEecceEEEecCCCccccccCCCHHHHHH Q lcl|Aclame:pro 118 --NGADMKWEYLRPSQVNTYYF-------EYENGMYYNITFD-DPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLR 187 (392) Q Consensus 118 --~G~~~~l~~l~~~~v~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~ 187 (392) .+.+..+.|+....+++... .+|...+|.+... .+.....+.+....|+||...+ .-|.|.++.+. T Consensus 143 ~~~~~i~~i~v~~~~~i~~~~~~~dp~sp~yg~P~~y~v~~~~~g~~~~~~~iH~SRl~~~~~~~----~~g~~~L~~~y 218 (449) T protein:vir:10 143 TKGRGLQKVSVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS----EDAIGFLEPAY 218 (449) T ss_pred ccCcceeeEEeeccccCChhhhhcCCCCCCCCCceEEEEeeeccCCCccceeeccceeEeecCCC----CCChhHHHHHH Confidence 23456677776655554321 1233333433321 1122234578999999985432 23778888888 Q ss_pred HHHHHHHHH-HHHHHHHHHccCCcceEE-----------eeCC-CCCchHHHHHHHHHHHhccccCCceeeccCCceEEe Q lcl|Aclame:pro 188 RESKIQRAS-DRLTISSLNSSLNVPGVL-----------TVKG-GGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTA 254 (392) Q Consensus 188 ~~i~~~~~~-~~~~~~~~~ng~~~~~i~-----------~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~ 254 (392) +.+.....+ ..+...+++|-.+...+. ...+ +...-.+......+.... +. ..+.++.+-+|++ T Consensus 219 n~l~~~~~~~~~~a~~~l~~~~rq~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~--~~-~~~~i~~~~d~~~ 295 (449) T protein:vir:10 219 NAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINR--GN-DVLMTTQGATVTP 295 (449) T ss_pred HHhhhHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhHHhhCCchHHHHHHHHHHHHHhc--cc-hheeecCCcceEE Confidence 765433333 223333443322211111 1111 111111111112222211 11 2345667778999 Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHhcccHHHc-CCcccccchHHHHHHHH------HHHHHHHHHHHHHHHHHHhh---- Q lcl|Aclame:pro 255 LEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYI-GGQGDQQSSIQQISGMY------ASALNRYLRPAISELEYKLS---- 323 (392) Q Consensus 255 l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~l-g~~~~~~~~~~~~~~~~------~~~l~p~l~~i~~~l~~~l~---- 323 (392) ++.++.+.. +......++||++-|||...| |.+....|+.+..+.|| +.-|.|.|+.+.+.|-+.-+ T Consensus 296 ~~~~~sgl~--d~l~~~~q~iaaa~~IP~t~L~Gqsp~glnst~D~~nyyd~i~~~Q~~l~p~le~l~~~l~~s~~g~~~ 373 (449) T protein:vir:10 296 LVTSVADPT--ATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV 373 (449) T ss_pred EecccCChh--HHHHHHHHHHHHHhCCCeeeeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCCC Confidence 888877554 667777788999999999977 43322222223333332 23366777777666644321 Q ss_pred hhhccchhhhhhcChHHHHH-------HHHHHHhCC---ccCHHHHHHHHHhCCCCCcccccccCCCCCCCCCCCCCC Q lcl|Aclame:pro 324 DHISVNMRPAIDPLGDNYLS-------TISTATRWG---ALAENQATFVLQEAGYIPKDLPAPENTNKKTTGQSNEPV 391 (392) Q Consensus 324 ~~~~~d~~~~~~~~~~~~~~-------~~~~~~~~g---~~t~nE~R~~l~~~g~~~~e~~~~~~~~~~~~gd~~~p~ 391 (392) .++.+.+..+..++.+++++ .+..++.+| +++.+|+|+.++..+...++.+..+ -+...++.+. .+ T Consensus 374 ~d~~i~f~pL~~~t~kEkAei~k~~A~a~~~~~~ag~~~~~~~~EiR~~~~~~~~~~~~~~~e~-~de~~~~~d~-~a 449 (449) T protein:vir:10 374 AKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPLGEED-GDEEDKATDS-AA 449 (449) T ss_pred CceeEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHccccCCcCHHHHHHHhcccCCCCCCCCCCC-CccccccCCc-CC Confidence 35666677777777777654 444566566 8999999998855553333332222 1111111111 11 No 134 >protein:vir:95254 Length: 488 # NCBI annotation: Phage conserved protein # Family: family:all:2372 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944885;genbank:gi:158267601;genbank:GeneID:2744039 Probab=99.19 E-value=6.9e-10 Score=70.79 Aligned_cols=365 Identities=14% Similarity=0.106 Sum_probs=185.2 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhh----------------hccCCCCcccchhhhhcchHHHHHHHHHHHh Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIME----------------SLLGDNNEWVSARAALRNSDLFSIILQLSSD 66 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ 66 (392) |. ... ...+-.++.-...+.. .+.+.....+ -+..++.+.|.+|++.+-.. T Consensus 1 ~~---------~~~---~~~~gl~p~rl~~i~~~~~~~~~~~~~~~~~~~Lr~~~~~~l-y~~m~~D~hi~s~l~~Rk~a 67 (488) T protein:vir:95 1 MA---------DIT---ETQESLPPFRMGEVGSLGLKVKNGRIYEEPRQALRFPESIKT-FQLMMRDPAVAASVNIIKMF 67 (488) T ss_pred CC---------Ccc---ccCCCCCHHHHHHHHHHhhccccchhhccchhhhcccchHHH-HHHHhhChHHHHHHHHHHHH Confidence 11 000 0000000010011110 0111111112 13344678999999999999 Q ss_pred hhhCceeeecch----hh------hhccc--CCccCCHHHHHHHHHHHHHHhCCeeEEEeccc-------------CCc- Q lcl|Aclame:pro 67 LAIVKINAEKKK----NQ------GIIDN--PSTNANKHGFWQSMFAQLLLGGEAFAYRWRNA-------------NGA- 120 (392) Q Consensus 67 ia~lp~~~~~~~----~~------~~~~~--PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~-------------~G~- 120 (392) |.+++|.+.... .. ..+.. -|-..++.+++..+. +.+++|-+..++++.. +|. T Consensus 68 v~~~~w~v~p~~~~~~d~~~~~~a~~v~~~l~~~~~~~~~~i~~~l-da~~~G~s~~Eivw~~~~~~~~~~~~~~~dg~~ 146 (488) T protein:vir:95 68 VRKVNWRFVPPKGKEQDPKMLERADFFNSLMDDMEHDWADFINSVM-SFCTYGFCVNEKVYKKRQGKKGKYQSKFDDGLI 146 (488) T ss_pred HhcCCceEecCCCCchhHHHHHHHHHHHHHHhccCccHHHHHHHHH-HhhcccceeeeeeeeccccccccccccccCCee Confidence 999999996311 10 11111 122345677777776 5678999999987642 232 Q ss_pred -eeEEEEeccccc-eeeecCCCceEEEEEEec-----------CCcceeeEEEecceEEEecCCCccccccCCCHHHHHH Q lcl|Aclame:pro 121 -DMKWEYLRPSQV-NTYYFEYENGMYYNITFD-----------DPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLR 187 (392) Q Consensus 121 -~~~l~~l~~~~v-~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~ 187 (392) +..+.+.|+... .+..+.+++......... .......+.+|...+++.++....+..+|.|.+..+. T Consensus 147 ~~~~i~~Rpq~~~~~f~~d~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~kfi~~~~~~~~g~p~g~gLlr~~~ 226 (488) T protein:vir:95 147 GWAKLPIRNQSTLDKWYFDEDFRRVTGVRQNLRNVSHIAGAINLGERPLTRKLPRAKFMLFKYDDEYGNPEGRSPLLNAY 226 (488) T ss_pred eeeeeeecCcccccceeeccCCCceeecccccccccccccccccccccccccccccceEEEeecCCCCccchhhHHHHHH Confidence 455555555321 233344444332211110 0011233557777766666666667778999999999 Q ss_pred HHHHHHHHHHHHHHHHHHccCCcceEEeeCCC--CCchHHHHHHH---HHHH----hccccCCceeeccCCceEE----- Q lcl|Aclame:pro 188 RESKIQRASDRLTISSLNSSLNVPGVLTVKGG--GLLSDKDKASR---SRSF----MKRSRSGGPVVLDDLEEFT----- 253 (392) Q Consensus 188 ~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~--~~~~~~~~~~~---~~~~----~~~~~~g~~~vl~~g~~~~----- 253 (392) -....-....++...|.++-+.|--+...+.. ....+...+.. .... .....+| ++++.|++.. T Consensus 227 w~~~fK~~~~~~w~~f~Er~g~g~p~~~~p~~~~~~~~~~e~~~l~~a~~~i~~~~~~~~~ag--~iiP~g~~~~~k~~~ 304 (488) T protein:vir:95 227 VPWKYKVQIEEYEAVGVSRDLVGMPKIGLPPDYLDENAEPEKKAFVQYCKTVVNDMIANDRAG--LIWPRYIDPDTKEDI 304 (488) T ss_pred HHHHHHHHHHHHHHHHHHHhcccceeEeeccCCCCCcccHHHHHHHHHHHHHHHHhhccchhh--eeeccccccccchhh Confidence 98888888889999999876555444444322 12222222111 1111 1112232 4556665322 Q ss_pred ----eccCC-hhhHHHHHHHHHHHHHHHHHhcccHHHcCCc--c--cccchH---HHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 254 ----ALEIK-SNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQ--G--DQQSSI---QQISGMYASALNRYLRPAISELEYK 321 (392) Q Consensus 254 ----~l~~~-~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~--~--~~~~~~---~~~~~~~~~~l~p~l~~i~~~l~~~ 321 (392) -++.. ..-..+.+..++..++|+.+. +|.+ + ...++. +-......+.+.-.++.|++.+|+. T Consensus 305 ~e~~l~~~~~~~~~~~~~li~~~d~~Isk~i------LGqtLT~~~~~~Gs~Al~~vh~ev~~~i~~aDa~~i~~tln~~ 378 (488) T protein:vir:95 305 FEFSLVSRQGAKAYDTGSIIDRYSKQIMMAF------MSDVLAMGQSKYGSFSLADSKTSLLAMSVDILLKQIKNVINRD 378 (488) T ss_pred hhhhccccccCCchhHHHHHHHHHHHHHHHH------hccccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 22222 222346677777778887764 5542 1 111222 2234556677888999999999998 Q ss_pred hhhhh-ccch-----------hhhhhcChHHHHHHHHHHHhCCccCH-----HHHHHHHHhCCCCC--cccccccCCCC- Q lcl|Aclame:pro 322 LSDHI-SVNM-----------RPAIDPLGDNYLSTISTATRWGALAE-----NQATFVLQEAGYIP--KDLPAPENTNK- 381 (392) Q Consensus 322 l~~~~-~~d~-----------~~~~~~~~~~~~~~~~~~~~~g~~t~-----nE~R~~l~~~g~~~--~e~~~~~~~~~- 381 (392) |.+.+ .++. ...-..|...+++.+..++..|+.-+ +.+|+.+ |+++ .+-+.....++ T Consensus 379 li~~l~~~Nfg~~~~~P~~~~~~~e~~Dl~~~ae~~~~L~~~G~~i~~~~~~~~i~e~~---gip~~~~~e~~~~~~~~~ 455 (488) T protein:vir:95 379 LVAQTYALNMWDDEEHVQITYDDIETPDLEAIGSYIQKTVAVGALEVDKELSNKLREHI---GLPPADESQPVSEKLSPN 455 (488) T ss_pred HHHHHHHhcCCCCCCccEEEecCcChhhHHHHHHHHHHHHhCCCccccHHHHHHHHHHh---CCCCCCCCccccccCCCC Confidence 76532 1111 11112345677889999999998765 3456554 5542 11111111111 Q ss_pred -----------CCCCCCCCCCC Q lcl|Aclame:pro 382 -----------KTTGQSNEPVP 392 (392) Q Consensus 382 -----------~~~gd~~~p~p 392 (392) ...+.+..|.| T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~ 477 (488) T protein:vir:95 456 SQSRSGDGYKTAGEGTAKTPSA 477 (488) T ss_pred CCCCCCcccCCCcccCCccccc Confidence 11111222222 No 135 >protein:vir:78161 Length: 355 # NCBI annotation: hypothetical protein # Family: family:all:2372 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294798;genbank:gi:149882819;genbank:GeneID:5309189 Probab=99.17 E-value=2e-10 Score=73.82 Aligned_cols=276 Identities=11% Similarity=0.022 Sum_probs=154.1 Q ss_pred eEEEeccc-CC--ceeEEEEeccccce-eeecCCCceEEEEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHH Q lcl|Aclame:pro 110 FAYRWRNA-NG--ADMKWEYLRPSQVN-TYYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYS 185 (392) Q Consensus 110 ~~~i~r~~-~G--~~~~l~~l~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~ 185 (392) +.++++.. .| .|..+.+.|+.++. +..+.+++.......... +.....++...+|+.++....+..+|.|.+.. T Consensus 1 v~Eivw~~~~g~~~~~~l~~r~~~~~~~f~~~~~~~l~~~~~~~~~--g~~~~~lp~~kfi~~~~~~~~g~p~G~gLlr~ 78 (355) T protein:vir:78 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVF--GKATVRIPVDRLVVFVNEREGANWLGQSLLRQ 78 (355) T ss_pred CeEEEEEeeCCeEEEeeeeecCccceeeeeeccCCceeEEEecCCC--CCCcceeccCCEEEEEeCCCCCCccchhhHHH Confidence 66666543 34 36778888887554 445555555443332222 22345778877777666666666789999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCC--CCchHHH------------HHHHHHHHhccccCCceeeccCCce Q lcl|Aclame:pro 186 LRRESKIQRASDRLTISSLNSSLNVPGVLTVKGG--GLLSDKD------------KASRSRSFMKRSRSGGPVVLDDLEE 251 (392) Q Consensus 186 ~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~--~~~~~~~------------~~~~~~~~~~~~~~g~~~vl~~g~~ 251 (392) +.-....-....++...|.+.-+.|--+.+.+.+ ....+++ ............+ ..++++.|++ T Consensus 79 ~~w~~~fK~~~~~~w~~f~Er~g~g~p~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~i~~g~~--a~~iip~g~~ 156 (355) T protein:vir:78 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEA--AGGYIPHGAN 156 (355) T ss_pred HHHHHHHHHhhHHHHHHHHHHcCCCceEEEecCCCCcccchhhhHHHHHHHHHHHHHHHHHHhhCCcc--eeEeecCCce Confidence 9999999999999999999987544444444322 2111110 1111122211112 3577889988 Q ss_pred EEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-cc Q lcl|Aclame:pro 252 FTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ--SSIQQISGMYASALNRYLRPAISELEYKLSDHI-SV 328 (392) Q Consensus 252 ~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~--~~~~~~~~~~~~~l~p~l~~i~~~l~~~l~~~~-~~ 328 (392) ++-++.+....++.+..++..++|+.++.-.---.+..++.. +..+.......+.+.-.++.|++.||+.|.+.+ .+ T Consensus 157 ie~~ea~g~~~~~~~~i~~~d~~Isk~iLGqtlTs~~~~~gGS~Alg~vh~~v~~~~~~aD~~~i~~~ln~~li~~l~~l 236 (355) T protein:vir:78 157 FTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQ 236 (355) T ss_pred EEEeecCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 877766656566788888888998876533322221111111 112233455677788899999999998876432 11 Q ss_pred chh-------hh---hhcChHHHHHHHHHHHhCCccCHHH-----HHHHHHhCCCCC-ccc--ccccCCCCCC------- Q lcl|Aclame:pro 329 NMR-------PA---IDPLGDNYLSTISTATRWGALAENQ-----ATFVLQEAGYIP-KDL--PAPENTNKKT------- 383 (392) Q Consensus 329 d~~-------~~---~~~~~~~~~~~~~~~~~~g~~t~nE-----~R~~l~~~g~~~-~e~--~~~~~~~~~~------- 383 (392) ++. .. ...+...+++.+..++..|+.-.++ +|+.+ |++. .+. .....-++.+ T Consensus 237 N~~~~~~~P~~~~~~~~~~~~~~a~~~~~l~~~G~~~~~~~~~~~~~e~~---gip~p~~~~~~~~~~~~~~~~~~~~~~ 313 (355) T protein:vir:78 237 NWGPEEPAPRLVPAQLGKEQPVTAEAIRALVECGAFTADPELEKDLRARY---GLPAPAERDDGADAAAAKAAGRRRAKR 313 (355) T ss_pred cCCCCCCCCEEEecCcChhHHHHHHHHHHHHhCCCccccHHHHHHHHHHh---CCCCCCCCCcccCCccccccccccccc Confidence 110 00 1223345678899999999876654 45544 5542 110 1000001110 Q ss_pred --------CCCCCCCCC Q lcl|Aclame:pro 384 --------TGQSNEPVP 392 (392) Q Consensus 384 --------~gd~~~p~p 392 (392) .+.+..|.+ T Consensus 314 ~~~~~~~~~~~a~~~~a 330 (355) T protein:vir:78 314 LPGQRQGAALPSRSPRA 330 (355) T ss_pred cCCccccccccccCCCC Confidence 111111111 No 136 >protein:vir:106716 Length: 698 # NCBI annotation: gp18 # Family: family:all:297 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944326;genbank:gi:38638625;genbank:GeneID:2657345 Probab=99.08 E-value=1.1e-10 Score=75.18 Aligned_cols=376 Identities=12% Similarity=0.039 Sum_probs=185.1 Q ss_pred Cc-chhhhhhccc-----ccccccccccccccCcchhhhhhhccCCCCcccch-hhhhcchHHHHHHHHHHHhhhhCcee Q lcl|Aclame:pro 1 MI-LPILNFINQT-----NDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSA-RAALRNSDLFSIILQLSSDLAIVKIN 73 (392) Q Consensus 1 m~-Mg~~n~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~al~~~~v~~~i~~ia~~ia~lp~~ 73 (392) -+ -++-..|.-. .....+.++.-.+ .........+..+.+-..+.. ....+.|.+++|+..|+.....= |. T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~F~Gy~~la~laQ~~eyr~~~~~ia~e~~R~-w~ 141 (698) T protein:vir:10 64 SPSLRLARQFEVDVSNYTPRERRAASYALDF-NGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRT-WG 141 (698) T ss_pred CccccccccceeccccCCccccchhhhhhcc-cccccccchhhhccCcchHHHHHHHhhccchhhHHHHHHHHhhcc-cc Confidence 11 1111011000 0000000000000 001111111111111111111 11224677899999999876433 42 Q ss_pred eec-----c------------------hh-hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEe--c------------ Q lcl|Aclame:pro 74 AEK-----K------------------KN-QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRW--R------------ 115 (392) Q Consensus 74 ~~~-----~------------------~~-~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~--r------------ 115 (392) ... + +. ..+..+=....-+..|.+.+.+. -+||-+.+++. - T Consensus 142 ~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erl~V~~~l~eai~~a-RlfGGa~~~i~I~gdd~~l~~PL~~~ 220 (698) T protein:vir:10 142 EAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHD-QAFGRAHPYFKIKGDDQIMDTPLVPR 220 (698) T ss_pred eeccccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccceEEEEEeecCccccccccccc Confidence 210 0 00 01111112222333344444444 46776655543 1 Q ss_pred ---ccCCceeEEEEeccccceeeecCC--------CceEEEEEEecCCcceeeEEEecceEEEecCCCcc------cccc Q lcl|Aclame:pro 116 ---NANGADMKWEYLRPSQVNTYYFEY--------ENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSID------GGKT 178 (392) Q Consensus 116 ---~~~G~~~~l~~l~~~~v~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~------~~~~ 178 (392) ...|...+|.+++|.+|++..... +...+|.. . + ..+....++.+...... -.+. T Consensus 221 ~~~I~kGslKGL~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V--~----G--~~IH~SRL~~~vg~pvpd~LKp~y~f~ 292 (698) T protein:vir:10 221 PYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWM--I----G--SEVHATRLHTIVSRPVGDMLKPTYSFA 292 (698) T ss_pred cccccCccceeeeeecccccccchhhhccchhhccCCCceEEE--e----c--ceecceeEEEecCCCchhhhcchhccC Confidence 123566679999999999864321 11111211 1 1 14566666655543211 1245 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeC--CCCC--chHHHHHHHHHHHhccccCCceeecc-CCceEE Q lcl|Aclame:pro 179 GISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVK--GGGL--LSDKDKASRSRSFMKRSRSGGPVVLD-DLEEFT 253 (392) Q Consensus 179 G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~--~~~~--~~~~~~~~~~~~~~~~~~~g~~~vl~-~g~~~~ 253 (392) |.|.++.+...+............+...-. ..++ +++ .... ...+..++..-.....+|. ++.+++ ++-+|+ T Consensus 293 G~Sv~q~~~e~V~~~~rT~~~v~~Li~~~~-~~~l-~~dla~aL~~g~~~~l~~R~eli~~~Rsn~-G~~llDk~~Eefe 369 (698) T protein:vir:10 293 GISMTQLAMPYIDNWLRTRQSVSDIVKQFS-VSGI-LMDLAQALTPGANVDLSMRAELINRYRDNR-NILFLDKATEEFF 369 (698) T ss_pred CccHHHHHHHHHHHHHHHhhhHHHHHHHhh-HHHH-HHHHHHhcCChhhHHHHHHHHHHHHhcCcc-ceEEEecCCcceE Confidence 999999999988887777666666554322 1221 111 0111 1112222222112223443 467777 478999 Q ss_pred eccCChhhHHHHHHHHHHHHHHHHHhcccHHHc-CCccccc---------chHHHHHHHHHHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 254 ALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYI-GGQGDQQ---------SSIQQISGMYASALNRYLRPAISELEYKLS 323 (392) Q Consensus 254 ~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~l-g~~~~~~---------~~~~~~~~~~~~~l~p~l~~i~~~l~~~l~ 323 (392) +.+.+...++ +......+.||.+-+||...| |.+..+- +.++..++.-+.-|.|.++.+-+.+.+..+ T Consensus 370 q~st~lSGLd--dVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~ 447 (698) T protein:vir:10 370 QFNTPLSGLD--ALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLF 447 (698) T ss_pred EEecCcCCHH--HHHHHHHHHHHhhhcCchhhhhccCCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 9987776554 677777889999999999966 4332221 223444555567788888888888766653 Q ss_pred ----hhhccchhhhhhcChHHHHH-------HHHHHHhCCccCHHHHHHHHHh---CCCC----Cccccccc------CC Q lcl|Aclame:pro 324 ----DHISVNMRPAIDPLGDNYLS-------TISTATRWGALAENQATFVLQE---AGYI----PKDLPAPE------NT 379 (392) Q Consensus 324 ----~~~~~d~~~~~~~~~~~~~~-------~~~~~~~~g~~t~nE~R~~l~~---~g~~----~~e~~~~~------~~ 379 (392) +.+.|.+..+..++..++++ ....++..|+++++|+|+.|.. .||. .+|.|.+. +. T Consensus 448 G~idp~i~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~d~~d~p~~~~~~~~~~~ 527 (698) T protein:vir:10 448 GAVDPSIKWQWNALRELDDLEVAEARYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGAPADDDIDGV 527 (698) T ss_pred CCCCCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhccCCCccccccCCcccCCCCCCCcchHH Confidence 45666666667777666554 4556778999999999999865 3442 12333211 11 Q ss_pred -----CCCCCCCCCCCC-C Q lcl|Aclame:pro 380 -----NKKTTGQSNEPV-P 392 (392) Q Consensus 380 -----~~~~~gd~~~p~-p 392 (392) .+..||++.+|. | T Consensus 528 ~~~~~~~~~~~~~~~~~~~ 546 (698) T protein:vir:10 528 LTYVQRMAEGGDTGAPTAP 546 (698) T ss_pred HhhhcCCcCCCCccccccc Confidence 222344444421 1 No 137 >protein:vir:78589 Length: 695 # NCBI annotation: NUDIX hydrolase # Family: family:all:297 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294854;genbank:gi:149882917;genbank:GeneID:5291060 Probab=99.03 E-value=4.4e-10 Score=71.90 Aligned_cols=376 Identities=11% Similarity=0.020 Sum_probs=183.5 Q ss_pred Cc-chhhhhhccc-----ccccccccccccccCcchhhhhhhccCCCCcccch-hhhhcchHHHHHHHHHHHhhhhCcee Q lcl|Aclame:pro 1 MI-LPILNFINQT-----NDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSA-RAALRNSDLFSIILQLSSDLAIVKIN 73 (392) Q Consensus 1 m~-Mg~~n~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~al~~~~v~~~i~~ia~~ia~lp~~ 73 (392) -+ -++-..|.-. .....+.++.-.+ .........+..+.+-..+.. ....+.|.+++|+..||.....= |. T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~F~Gy~~la~laQ~~eyr~~~~~ia~e~~R~-w~ 141 (695) T protein:vir:78 64 SPSLRLARQFEVDVSNYTPRERRAASYALDF-NGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRT-WG 141 (695) T ss_pred CcccccceeceeccccCCccccchhhhhhcc-cccccccchhhhccCcchHHHHHHHhhccchhhHHHHHHHHhhcc-cc Confidence 11 1110001000 0000000000000 001111111111111111111 11224677899999999876433 42 Q ss_pred eec-----c------------------hh-hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEec-------------- Q lcl|Aclame:pro 74 AEK-----K------------------KN-QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWR-------------- 115 (392) Q Consensus 74 ~~~-----~------------------~~-~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r-------------- 115 (392) ... + +. ..+..+=....-+..|.+.+.+ --+||-+.+++.- T Consensus 142 ~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erL~V~~~l~eaik~-aRlfGGa~~~i~i~gdd~~l~~PL~~~ 220 (695) T protein:vir:78 142 EAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIH-DQAFGRAHPYFKIKGDDQIMDTPLVPR 220 (695) T ss_pred eeccccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHh-hccccceEEEEEeccCccccccccccc Confidence 210 0 00 0111111222233344444444 4467767655421 Q ss_pred ---ccCCceeEEEEeccccceeeecCC--------CceEEEEEEecCCcceeeEEEecceEEEecCCCcc------cccc Q lcl|Aclame:pro 116 ---NANGADMKWEYLRPSQVNTYYFEY--------ENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSID------GGKT 178 (392) Q Consensus 116 ---~~~G~~~~l~~l~~~~v~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~------~~~~ 178 (392) ...|...++.+++|.+|++..... +...+|.. . + ..+....++.+...... -.+. T Consensus 221 ~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V--~----G--~kIH~SRL~~f~g~plPd~LKp~y~~~ 292 (695) T protein:vir:78 221 PYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWM--I----G--TEVHATRLHTIVSRPVGDMLKPTYSFA 292 (695) T ss_pred cccccCcceeeeEeecccccccchhhhccchhhccCCCceEEE--e----c--eEEeeeeEEEecCCCchhhhhcccccC Confidence 123566779999999999864321 11112221 1 1 24666666666543211 1246 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeC--CCCCc-hH-HHHHHHHHHHhccccCCceeecc-CCceEE Q lcl|Aclame:pro 179 GISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVK--GGGLL-SD-KDKASRSRSFMKRSRSGGPVVLD-DLEEFT 253 (392) Q Consensus 179 G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~--~~~~~-~~-~~~~~~~~~~~~~~~~g~~~vl~-~g~~~~ 253 (392) |.|..+.+...+............+...-. ..++ +++ ..... .+ +..++..-.....+| .++.+++ +.-+|. T Consensus 293 GiSv~q~~~e~V~~~~rT~~~v~~Li~~~~-v~~l-k~dla~~L~~g~~~~l~~R~eli~~~Rsn-~G~~llDk~~Eefe 369 (695) T protein:vir:78 293 GISMTQLAMPYIDNWLRTRQSVSDIVKQFS-VSGI-LMDLAQALMPGANVDLSMRAELINRYRDN-RNILFLDKATEEFF 369 (695) T ss_pred cccHHHHHHHHHHHHHHHHhHHHHHHHhhh-hHHH-HHHHHHhhcChhHHHHHHHHHHHHHhcCc-cceEEEecCCcceE Confidence 999999999888887777666666654322 2222 111 11111 11 122221111122334 3467777 478999 Q ss_pred eccCChhhHHHHHHHHHHHHHHHHHhcccHHHc-CCccccc---------chHHHHHHHHHHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 254 ALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYI-GGQGDQQ---------SSIQQISGMYASALNRYLRPAISELEYKLS 323 (392) Q Consensus 254 ~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~l-g~~~~~~---------~~~~~~~~~~~~~l~p~l~~i~~~l~~~l~ 323 (392) +.+.+...++ +......+.||.+-+||...| |.+..+- +.++..+..-+.-|.|.++.+-+.+.+..+ T Consensus 370 q~stslSGLd--dVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~ 447 (695) T protein:vir:78 370 QFNTPLSGLD--ALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLF 447 (695) T ss_pred EEecccCCHH--HHHHHHHHHHHhhhcCchhhhhccCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 9987766554 677777789999999999966 4332221 223444555567788888888888766653 Q ss_pred ----hhhccchhhhhhcChHHHHH-------HHHHHHhCCccCHHHHHHHHHh---CCCC----CcccccccCC------ Q lcl|Aclame:pro 324 ----DHISVNMRPAIDPLGDNYLS-------TISTATRWGALAENQATFVLQE---AGYI----PKDLPAPENT------ 379 (392) Q Consensus 324 ----~~~~~d~~~~~~~~~~~~~~-------~~~~~~~~g~~t~nE~R~~l~~---~g~~----~~e~~~~~~~------ 379 (392) +.+.|.+..+..++..++++ ....++..|+++++|+|+.|.. .||. .+|.|.+..- T Consensus 448 G~idpdi~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~ 527 (695) T protein:vir:78 448 GAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGV 527 (695) T ss_pred CCCCCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCccchhhhh Confidence 45566666666777666554 4556778999999999999864 3443 2233222100 Q ss_pred -----CCCCC---CCCCCCCC Q lcl|Aclame:pro 380 -----NKKTT---GQSNEPVP 392 (392) Q Consensus 380 -----~~~~~---gd~~~p~p 392 (392) +-..+ |+..++.| T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~ 548 (695) T protein:vir:78 528 LTYVQRLAEGGDTGAPGGARA 548 (695) T ss_pred HhhhcCcccccccCCCCCCCC Confidence 00011 11122222 No 138 >protein:vir:101541 Length: 694 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958122;genbank:gi:41057668;genbank:GeneID:2716798 Probab=99.02 E-value=6.5e-10 Score=70.96 Aligned_cols=376 Identities=11% Similarity=0.025 Sum_probs=183.0 Q ss_pred Ccch-hhhhhc--cc---ccccccccccccccCcchhhhhhhccCCCCcccch-hhhhcchHHHHHHHHHHHhhhhCcee Q lcl|Aclame:pro 1 MILP-ILNFIN--QT---NDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSA-RAALRNSDLFSIILQLSSDLAIVKIN 73 (392) Q Consensus 1 m~Mg-~~n~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~al~~~~v~~~i~~ia~~ia~lp~~ 73 (392) -+-+ +-..|. -. .....+.++.-.+ .........+..+.+-..+.. ....+.|.+++|+..||.....= |. T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~F~Gy~~la~laQ~~eyr~~~~~ia~e~~R~-w~ 140 (694) T protein:vir:10 63 SPSLRLARQFEVDVSNYTPRERRAASYALDF-NGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRT-WG 140 (694) T ss_pred CcchhhhhhccccccCCCccccchhhhhhcc-CcccccchhhhhccCcchHHHHHHHhhccchhhHHHHHHHHhhcc-cc Confidence 1100 000000 00 0000000111000 011111111111111111111 11234677899999999876433 42 Q ss_pred eec-----c------------------hh-hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEec-------------- Q lcl|Aclame:pro 74 AEK-----K------------------KN-QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWR-------------- 115 (392) Q Consensus 74 ~~~-----~------------------~~-~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r-------------- 115 (392) ... + +. ..+..+=....-+..|.+.+.+ --+||-+.+++.- T Consensus 141 ~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erl~V~~~l~eaik~-aRlfGGa~~~i~I~gdd~~l~~PL~~~ 219 (694) T protein:vir:10 141 EAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIH-DQAFGRAHPYFKIKGDDQIMDTPLVPR 219 (694) T ss_pred eeccccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHh-hccccceEEEEEeecCccccccccccc Confidence 210 0 00 0111111222233344444444 4467767655431 Q ss_pred ---ccCCceeEEEEeccccceeeecCC--------CceEEEEEEecCCcceeeEEEecceEEEecCCCcc------cccc Q lcl|Aclame:pro 116 ---NANGADMKWEYLRPSQVNTYYFEY--------ENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSID------GGKT 178 (392) Q Consensus 116 ---~~~G~~~~l~~l~~~~v~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~------~~~~ 178 (392) ...|...++.+++|.+|++..... +...+|.. . + ..+....++.+...... -.+. T Consensus 220 ~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V--~----G--~~IH~SRL~~f~g~plPd~LKp~y~~~ 291 (694) T protein:vir:10 220 PYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWM--I----G--TEVHATRLHTIVSRPVGDMLKPTYSFA 291 (694) T ss_pred cccccCcceeeeEeecccccccchhhhccchhhccCCCceEEE--e----c--eEEeeeeEEEecCCCchhhhhcccccC Confidence 123566779999999999864321 11112211 1 1 24666666666543211 1246 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeC--CCCCc-hH-HHHHHHHHHHhccccCCceeecc-CCceEE Q lcl|Aclame:pro 179 GISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVK--GGGLL-SD-KDKASRSRSFMKRSRSGGPVVLD-DLEEFT 253 (392) Q Consensus 179 G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~--~~~~~-~~-~~~~~~~~~~~~~~~~g~~~vl~-~g~~~~ 253 (392) |.|..+.+...+............+...-. ..++ +++ ..... .+ +..++..-.....+| .++.+++ +.-+|. T Consensus 292 G~Sv~q~~~e~V~~~~rT~~~v~~Li~~~~-v~~l-k~dla~~L~~g~~~~l~~R~eli~~~Rsn-~G~~llDk~~Eefe 368 (694) T protein:vir:10 292 GISMTQLAMPYIDNWLRTRQSVSDIVKQFS-VSGI-LMDLAQALMPGANVDLSMRAELINRYRDN-RNILFLDKATEEFF 368 (694) T ss_pred cccHHHHHHHHHHHHHHHHhHHHHHHHhhh-hHHH-HHHHHHhhcChhHHHHHHHHHHHHHhcCc-cceEEEecCCcceE Confidence 999999999888887777666666654322 2222 111 11111 11 122221111122334 3467777 478999 Q ss_pred eccCChhhHHHHHHHHHHHHHHHHHhcccHHHc-CCccccc---------chHHHHHHHHHHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 254 ALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYI-GGQGDQQ---------SSIQQISGMYASALNRYLRPAISELEYKLS 323 (392) Q Consensus 254 ~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~l-g~~~~~~---------~~~~~~~~~~~~~l~p~l~~i~~~l~~~l~ 323 (392) +.+.+...++ +......+.||.+-+||...| |.+..+- +.++..++.-+.-|.|.++.+-+.+.+..+ T Consensus 369 q~stslSGLd--dVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~ 446 (694) T protein:vir:10 369 QFNTPLSGLD--ALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLF 446 (694) T ss_pred EEecccCCHH--HHHHHHHHHHHhhhcCchhhhhccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 9987766554 677777789999999999966 4332221 223444555567788888888888766653 Q ss_pred ----hhhccchhhhhhcChHHHHH-------HHHHHHhCCccCHHHHHHHHHh---CCCC----CcccccccCC------ Q lcl|Aclame:pro 324 ----DHISVNMRPAIDPLGDNYLS-------TISTATRWGALAENQATFVLQE---AGYI----PKDLPAPENT------ 379 (392) Q Consensus 324 ----~~~~~d~~~~~~~~~~~~~~-------~~~~~~~~g~~t~nE~R~~l~~---~g~~----~~e~~~~~~~------ 379 (392) +.+.|.+..+..++..++++ ....++..|+++++|+|+.|.. .||. .+|.|.+..- T Consensus 447 G~idp~i~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~ 526 (694) T protein:vir:10 447 GAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGV 526 (694) T ss_pred CCCCCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCccchhhhh Confidence 45566666666777666554 4556778999999999999864 3443 2233222100 Q ss_pred -----CCCCCCCCCC--------CCC Q lcl|Aclame:pro 380 -----NKKTTGQSNE--------PVP 392 (392) Q Consensus 380 -----~~~~~gd~~~--------p~p 392 (392) +-..+++.+. -.| T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~g~~~~ 552 (694) T protein:vir:10 527 LTYVQRLAEGGDTGAPGGARAGATAP 552 (694) T ss_pred HhhhcCcccccccCCCCcccccccCC Confidence 0001111111 111 No 139 >protein:vir:3648 Length: 695 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705643;genbank:gi:23752328;genbank:GeneID:955749 Probab=99.01 E-value=4.8e-10 Score=71.67 Aligned_cols=376 Identities=11% Similarity=0.032 Sum_probs=181.8 Q ss_pred Cc-chhhhhhccc-----ccccccccccccccCcchhhhhhhccCCCCcccch-hhhhcchHHHHHHHHHHHhhhhCcee Q lcl|Aclame:pro 1 MI-LPILNFINQT-----NDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSA-RAALRNSDLFSIILQLSSDLAIVKIN 73 (392) Q Consensus 1 m~-Mg~~n~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~al~~~~v~~~i~~ia~~ia~lp~~ 73 (392) -+ -++-..|.-. .....+.++.-.+ .........+..+.+-..+.. ....+.|.+++|+..|+.....= |. T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~F~Gy~~la~laQ~~eyr~~~~~ia~e~~R~-w~ 141 (695) T protein:vir:36 64 SPSLRLARQFEVDVSNYTPRERRAASYALDF-NGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRT-WG 141 (695) T ss_pred CcccccceeceecccccCccccchhhhhhcc-cccccccchhhhccCcchHHHHHHHhhccchhhHHHHHHHHhhcc-cc Confidence 11 0110001000 0000000000000 000111111111111111111 11224677899999999876433 42 Q ss_pred eec-----c------------------hh-hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEec-------------- Q lcl|Aclame:pro 74 AEK-----K------------------KN-QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWR-------------- 115 (392) Q Consensus 74 ~~~-----~------------------~~-~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r-------------- 115 (392) ... + +. ..+..+=....-+..|.+.+. +--+||-+.+++.- T Consensus 142 ~~~~~~~e~~~~~g~~~~~~~~~~~d~dqik~L~~e~erL~V~~~l~eaik-~aRlfGGa~~~i~i~gdd~~l~~PL~~~ 220 (695) T protein:vir:36 142 EAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVI-HDQAFGRAHPYFKIKGDDQIMDTPLVPR 220 (695) T ss_pred eecccchhhhhhccccccccccccCchHHHHHHHHHHHHHHHHHHHHHHHH-hhccccceEEEEEeccCccccccccccc Confidence 210 0 00 011111111222333334344 44467777655431 Q ss_pred ---ccCCceeEEEEeccccceeeecCC--------CceEEEEEEecCCcceeeEEEecceEEEecCCCcc------cccc Q lcl|Aclame:pro 116 ---NANGADMKWEYLRPSQVNTYYFEY--------ENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSID------GGKT 178 (392) Q Consensus 116 ---~~~G~~~~l~~l~~~~v~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~------~~~~ 178 (392) ...|...++.+++|.+|++..... +...+|.. . + ..+....++.+...... -.+. T Consensus 221 ~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V--~----G--~kIH~SRL~~f~g~plPd~LKp~y~~~ 292 (695) T protein:vir:36 221 PYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWM--I----G--TEVHATRLHTIVSRPVGDMLKPTYSFA 292 (695) T ss_pred cccccCcceeeeEeecccccccchhhhccchhhccCCCceEEE--e----c--eEEeeeeEEEecCCCchhhhhcccccC Confidence 123566779999999999864321 11112211 1 1 24666666666543211 1246 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeC--CCCCc-hH-HHHHHHHHHHhccccCCceeecc-CCceEE Q lcl|Aclame:pro 179 GISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVK--GGGLL-SD-KDKASRSRSFMKRSRSGGPVVLD-DLEEFT 253 (392) Q Consensus 179 G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~--~~~~~-~~-~~~~~~~~~~~~~~~~g~~~vl~-~g~~~~ 253 (392) |.|..+.+...+............+...-. ..++ +++ ..... .+ +..++..-.....+| .++.+++ +.-+|. T Consensus 293 GiSv~q~~~e~V~~~~rT~~~v~~Li~~~~-v~~l-k~dla~aL~~g~~~~l~~R~eli~~~Rsn-~G~~llDk~~Eefe 369 (695) T protein:vir:36 293 GISMTQLAMPYIDNWLRTRQSVSDIVKQFS-VSGI-LMDLAQALMPGANVDLSMRAELINRYRDN-RNILFLDKATEEFF 369 (695) T ss_pred cccHHHHHHHHHHHHHHHHhHHHHHHHhhh-HHHH-HHHHHHhhcChhHHHHHHHHHHHHHhcCc-cceEEEecCCcceE Confidence 999999999888887777666666554321 2221 111 11111 11 122222111122334 3467777 478999 Q ss_pred eccCChhhHHHHHHHHHHHHHHHHHhcccHHHc-CCccccc---------chHHHHHHHHHHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 254 ALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYI-GGQGDQQ---------SSIQQISGMYASALNRYLRPAISELEYKLS 323 (392) Q Consensus 254 ~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~l-g~~~~~~---------~~~~~~~~~~~~~l~p~l~~i~~~l~~~l~ 323 (392) +.+.+...++ +......+.||.+-+||...| |.+..+- +.++..+..-+.-|.|.++.+-+.+.+..+ T Consensus 370 q~stslSGLd--dVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~ 447 (695) T protein:vir:36 370 QFNTPLSGLD--ALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLF 447 (695) T ss_pred EEecccCCHH--HHHHHHHHHHHhhhcCchhhhhccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 9987766554 677777789999999999966 4332221 223444555567788888888888766653 Q ss_pred ----hhhccchhhhhhcChHHHHH-------HHHHHHhCCccCHHHHHHHHHh---CCCC----CcccccccCC------ Q lcl|Aclame:pro 324 ----DHISVNMRPAIDPLGDNYLS-------TISTATRWGALAENQATFVLQE---AGYI----PKDLPAPENT------ 379 (392) Q Consensus 324 ----~~~~~d~~~~~~~~~~~~~~-------~~~~~~~~g~~t~nE~R~~l~~---~g~~----~~e~~~~~~~------ 379 (392) +.+.|.+..+..++..++++ ....++..|+++++|+|+.|.. .||. .+|.|.+..- T Consensus 448 G~idpdi~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~ 527 (695) T protein:vir:36 448 GAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGV 527 (695) T ss_pred CCCCCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCccchhhhh Confidence 45566666666777666554 4556778999999999999864 3443 2233222100 Q ss_pred -----CCCCCCCCCC--------CCC Q lcl|Aclame:pro 380 -----NKKTTGQSNE--------PVP 392 (392) Q Consensus 380 -----~~~~~gd~~~--------p~p 392 (392) +-..+++.+. -+| T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~g~~~~ 553 (695) T protein:vir:36 528 LTYVQRLAEGGDTGAPGGARAGATAP 553 (695) T ss_pred HhhhcCcccccccCCCCcccccccCC Confidence 0001111111 111 No 140 >protein:vir:98444 Length: 434 # NCBI annotation: hypothetical protein # Family: family:all:5096 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958276;genbank:gi:41057250;genbank:GeneID:2732828 Probab=98.94 E-value=2.8e-09 Score=67.45 Aligned_cols=348 Identities=8% Similarity=-0.040 Sum_probs=158.2 Q ss_pred cccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchhhhhcccCCccCCHHHHHHHHHHHH Q lcl|Aclame:pro 24 YFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKNQGIIDNPSTNANKHGFWQSMFAQL 103 (392) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l 103 (392) +.+.... +-+..+. +.+ ......-+|+.++..+---.|.+-+.+.+..+.+-...-........+..+. T Consensus 1 ~l~~~~~-~~~~~~~---------~~~-v~n~~~~ivd~~~~~l~~~gf~~~d~~~~~~~~~i~~~N~~d~~~~~~~~~a 69 (434) T protein:vir:98 1 MLPKNAE-QAFLDFQ---------RKA-RTNFCGLIANASVHRLLALGVTGPDGEPDTRASRWWQANRLDSRQKLVWRMA 69 (434) T ss_pred CCCCCcc-HHHHHhh---------hhh-hccchHHHHHHHHhhhccCceecCCCchHHHHHHHHHhcChhHHHHHHHHHH Confidence 1111110 0000000 000 0112334555555533222343333322222111111113345566788888 Q ss_pred HHhCCeeEEEecccCCc-----e-eEEEEeccccceeeecCCCceEEEEE-Eec---CCcceee---------------- Q lcl|Aclame:pro 104 LLGGEAFAYRWRNANGA-----D-MKWEYLRPSQVNTYYFEYENGMYYNI-TFD---DPKIEPI---------------- 157 (392) Q Consensus 104 ~l~G~a~~~i~r~~~G~-----~-~~l~~l~~~~v~~~~~~~~~~~~~~~-~~~---~~~~~~~---------------- 157 (392) +.+|.+|+.+.++.++. + ..+.+++|..+.+.++...+.+.... .+. +...... T Consensus 70 ~i~G~ay~~v~~~~~~~~~~~~~~~~I~~~~p~~~~~i~D~~~~~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (434) T protein:vir:98 70 MAQSAGYMLVGAHPTRTEDNGRPSPLITMEHPSECIVEYDPETGEPLVGLKVWHNDIDGFGYARVFFDDTSFPYRTRERT 149 (434) T ss_pred hhcCceEEEEecCCCcccccCCceeEEEEeccceeEEEEeCCCCceEEEEEEEEeccCCceEEEEEEeCcEEEEEEeecc Confidence 99999999998765442 2 23678899888887765432221110 000 0000000 Q ss_pred ----------------------EEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEe Q lcl|Aclame:pro 158 ----------------------LQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLT 215 (392) Q Consensus 158 ----------------------~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~ 215 (392) ..+..-.|+||.++...+. .|.|-+......++..+.+........+-.+.|..++. T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~N~~~~~~-~g~sd~e~vi~liDa~~~~~s~~~~~~~~~a~p~~~i~ 228 (434) T protein:vir:98 150 GARLPWGPDSWVYTGTADSGDVHDLGGMQLVEFARMPDLGE-DPEPEFAGVLDIQDRVNLGILNRMAASRFSGFRQKWIK 228 (434) T ss_pred ccccccccccceecccccccccCCCCccceEEeccCCCcCc-CCcchhhhHHHHHHHHHHHHHHHHHHHHHhcchhhhhc Confidence 0122344666665533322 58888888888888777776655555555555655544 Q ss_pred e-CCCCCchH-HHHHHHHHHHhccccCCceeecc-CCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc Q lcl|Aclame:pro 216 V-KGGGLLSD-KDKASRSRSFMKRSRSGGPVVLD-DLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ 292 (392) Q Consensus 216 ~-~~~~~~~~-~~~~~~~~~~~~~~~~g~~~vl~-~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~ 292 (392) - +......+ .......+... ...+++++++ ++.++.++..+.-+ .+++..+..+.+|+..=++|++.+|+..+ T Consensus 229 G~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~q~~~~~~~-~~~~~l~~~i~~~~~~~~~p~~~~~~~~~- 304 (434) T protein:vir:98 229 GHKFAKRTDPATGMTVVDQPFV--PSPSAVWASEGENTQFGQLDATDLS-GFLKEHASDVRDMLTISQTPTYLYATDLV- 304 (434) T ss_pred CCCcccccccccccchhhhhhh--ccccccccCCCCCceEEEecCcchH-HHHHHHHHHHHHHhcccCCCHHHhccccC- Confidence 2 11111111 11111111111 1234456665 46788777654332 37788888999999999999999986432 Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------------hhccchhhhhhcChHHHHHHHHHHHhCCccCH Q lcl|Aclame:pro 293 QSSIQQISGMYASALNRYLRPAISELEYKLSD----------------HISVNMRPAIDPLGDNYLSTISTATRWGALAE 356 (392) Q Consensus 293 ~~~~~~~~~~~~~~l~p~l~~i~~~l~~~l~~----------------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~ 356 (392) +++.++++.. ...+.--+...+..|...|-. .+...+..-...+..+.+..+.++...|+ +. T Consensus 305 n~Sg~Al~~~-~~~l~~k~~~k~~~f~~~l~~~~rl~~~~~g~~~~~~~~~v~w~~~~~~s~~~~ada~~kl~~~g~-~~ 382 (434) T protein:vir:98 305 NISADTIGAL-DILHVAKVREHIASFSEGLESVLALAAAQAGVPEDYTEAEVRWANPAHVTMAVKADAATKLKSIGY-PL 382 (434) T ss_pred ChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhheeeeEEecCCCCCCHHHHHHHHHHHHhcCC-cH Confidence 2333333321 222222222233322222210 11111222222355667777888877775 44 Q ss_pred HHHHHHHHhCCCCCcccccccCC-------CCCCCCCCCC----------CCC Q lcl|Aclame:pro 357 NQATFVLQEAGYIPKDLPAPENT-------NKKTTGQSNE----------PVP 392 (392) Q Consensus 357 nE~R~~l~~~g~~~~e~~~~~~~-------~~~~~gd~~~----------p~p 392 (392) .-.+++ .|+.+.++.+.+.. ......++.+ .++ T Consensus 383 e~~~~~---lg~~~~e~~r~~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 432 (434) T protein:vir:98 383 DVIAEE---LDESPARVRRIVAGAASQALLAASLLPAPGAPSAGNVPDSGGAV 432 (434) T ss_pred HHHHHh---CCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCcccCCC Confidence 333333 36655554322100 0000001111 111 No 141 >protein:vir:9568 Length: 410 # NCBI annotation: gp34 # Family: family:all:524 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862873;genbank:gi:32469465;genbank:GeneID:1461310 Probab=98.77 E-value=3.6e-08 Score=61.39 Aligned_cols=347 Identities=12% Similarity=0.030 Sum_probs=152.4 Q ss_pred hhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhh----hcchHHHHHHHHHHHhhhhCceeeecchhhh Q lcl|Aclame:pro 6 LNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAA----LRNSDLFSIILQLSSDLAIVKINAEKKKNQG 81 (392) Q Consensus 6 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a----l~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~ 81 (392) ++..+.+...... ++ .+.. .+ ..-+..+.++.. +......-+|+-+|..+ -+.-++.+... T Consensus 1 l~~~~~r~~~~~~-----yY-~g~~-----~~-~~~~~~~p~~~~~~~~~v~nw~~~~Vds~a~rl---~~~Gf~~~d~~ 65 (410) T protein:vir:95 1 MNLYQSRVNLRYK-----HY-AMQH-----YE-APTGITIPAHIRAKYQAVLGWAAKGVDSLADRL---IFRAFANDDFN 65 (410) T ss_pred CCcchhhHHHHHH-----Hh-cCCC-----Cc-cccchhccHHHHhHHHhhcchhHHHHHHhHhhh---ccccccCCCch Confidence 3333222111110 00 0000 00 000000111100 00111222333333322 22222222111 Q ss_pred hcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEe-cCCcce---ee Q lcl|Aclame:pro 82 IIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITF-DDPKIE---PI 157 (392) Q Consensus 82 ~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~-~~~~~~---~~ 157 (392) +.+-...-........+..+.+.+|.||+.+..+.+|.| .+.+++|..+...+|...+.+...+.+ .....+ .. T Consensus 66 -l~~i~~~N~ld~~~~~~~~~al~~G~sf~~v~~~~d~~~-~i~~~sP~~~~~i~Dp~~~~~~~al~~~~~~~~~~~~~~ 143 (410) T protein:vir:95 66 -VTEIFDRNNPDIFFDSAILSALIGSCSFVYISKGEDDEV-RLQVIESSNATGVIDPITGLLVEGYAVLARDDYNRPTLE 143 (410) T ss_pred -HHHHHhhcChHHHHHHHHHHHHHhCceeEEEecCCCCce-EEEEEcccceEEEEeCCCCceEEEEEEEEecCCCeEEEE Confidence 111122223344556778888999999999999888886 478999999998887765554432221 111110 11 Q ss_pred EEEecc---------------------eEEEecCCCccccccCCCH----HHHHHHHHHHHHHHHHHHHHHHHccCCcc- Q lcl|Aclame:pro 158 LQAPQS---------------------DLIHMKLLSIDGGKTGISP----LYSLRRESKIQRASDRLTISSLNSSLNVP- 211 (392) Q Consensus 158 ~~~~~~---------------------~vih~~~~~~~~~~~G~s~----l~~~~~~i~~~~~~~~~~~~~~~ng~~~~- 211 (392) ..+.++ .|++|.+....+...|.|- +..+.+.+.....-......++. .|. T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~~~l~~~~G~s~I~~~v~~l~da~~r~~~~~~~~~e~~a---~pqr 220 (410) T protein:vir:95 144 AYFEPNATHFIPKDGEPYSVTNETGIPLLVPVIHRPDAVRPFGRSRITRAGMYYQKYAKRTLERADITAEFYS---WPQK 220 (410) T ss_pred EEEeCCcEEEEeeCCccccccCCCCCcceEEecccccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHhc---chhh Confidence 122222 3444544333234457663 33444433333333333444443 343 Q ss_pred eEEeeCCCCCchHHHHHHHHHHHhccccCCceeeccC-----CceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHc Q lcl|Aclame:pro 212 GVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDD-----LEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYI 286 (392) Q Consensus 212 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~-----g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~l 286 (392) .++.++.+....+... ...++++.+++ +.++.++....-+ .|++..+.....||.+=++|++.+ T Consensus 221 ~i~G~d~d~~~~~~~~----------~~~~~i~~~~~~~~~~~~~v~q~~~~~l~-~~~~~l~~l~~~~a~~s~lP~~~l 289 (410) T protein:vir:95 221 YILGLDPDAEPMEKWK----------ATVSSLLTISSSDKGVKPSVGQFTTASMS-PFTEQLRTAAAGFAGEMGLTLDDL 289 (410) T ss_pred eeeccCCCCCcCchhh----------hhhhhheeccCCCCCCcceEEecCCCChH-HHHHHHHHHHHHHhhhcCCCHHHh Confidence 3343433222122111 11233444442 3567666554322 489999999999999999999999 Q ss_pred CCcccccchHHHHHHHH---HHHHHHHHHHHHHHHHHHh--h----hh----------hccchhhhhhc---ChHHHHHH Q lcl|Aclame:pro 287 GGQGDQQSSIQQISGMY---ASALNRYLRPAISELEYKL--S----DH----------ISVNMRPAIDP---LGDNYLST 344 (392) Q Consensus 287 g~~~~~~~~~~~~~~~~---~~~l~p~l~~i~~~l~~~l--~----~~----------~~~d~~~~~~~---~~~~~~~~ 344 (392) |+.+++.++.++.+.-. ...+.-.-+.+.+.+.+.+ . .. ++..+....++ +....+.. T Consensus 290 g~~~~NpsSa~Al~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~i~~~~~~~~~~~~~~~v~W~p~~d~~~~s~a~~aDa 369 (410) T protein:vir:95 290 GFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYVAACLRDEFRYTRSQFVRTAVKWEPLFEADANTMTMIGDG 369 (410) T ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccceeeEEeeecCCcchhhHHHHHHH Confidence 98665434443333211 1111122222222232211 0 00 11112211122 23345556 Q ss_pred HHHHHhC--CccCHHHHHHHHHhCCCCCcccccccCCCCCCCCC Q lcl|Aclame:pro 345 ISTATRW--GALAENQATFVLQEAGYIPKDLPAPENTNKKTTGQ 386 (392) Q Consensus 345 ~~~~~~~--g~~t~nE~R~~l~~~g~~~~e~~~~~~~~~~~~gd 386 (392) +.++.++ |+....-+++.| |+.+.++...-..-...-|+ T Consensus 370 ~~Kl~~a~~g~~~~~~~~~~l---g~~~~~~~~~~~~e~~~~g~ 410 (410) T protein:vir:95 370 VVKLNQALPGYINAETIRDLT---GIAGDMSAKPVVSEGGSNGE 410 (410) T ss_pred HHHHHHhccCCccHHHHHHhc---CCChHHHHHHHHHHHHhCCC Confidence 6667776 677766666655 88766553331111112222 No 142 >protein:vir:7768 Length: 484 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817602;genbank:gi:29566032;genbank:GeneID:1259226 Probab=98.73 E-value=7.9e-08 Score=59.52 Aligned_cols=373 Identities=11% Similarity=0.047 Sum_probs=155.7 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhh---hhcchHHHHHHHHHHHhhhhCceeeecc Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARA---ALRNSDLFSIILQLSSDLAIVKINAEKK 77 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---al~~~~v~~~i~~ia~~ia~lp~~~~~~ 77 (392) .+=.+.+.+......- .....++- +.. .+ ...+..+..+. ...+....-+|+.++..+--..+.+-+. T Consensus 16 ~~~~l~~~~~~~~~rl--~~l~~Yy~-G~~-----~i-~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~~~~~ 86 (484) T protein:vir:77 16 AREEMLNLFTERTQDL--GDNTAYYE-SER-----RP-DAVGVTVPQQMQKLLAHVGYPRLYIDAIAARQELEGFRLGGA 86 (484) T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHh-ccc-----cc-hhcccccchhHHhhhhhcCcHHHHHHHHHhhhccCceecCCc Confidence 1111222222211100 00011110 000 00 00000111110 0111222334444444332223433221 Q ss_pred h-hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCce-------eEEEEeccccceeeecCCCceEEEEEEe Q lcl|Aclame:pro 78 K-NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGAD-------MKWEYLRPSQVNTYYFEYENGMYYNITF 149 (392) Q Consensus 78 ~-~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~-------~~l~~l~~~~v~~~~~~~~~~~~~~~~~ 149 (392) + ....+.+-...-........+..+.+.+|.||+.+.++.+|.+ ..+.+++|..+.+.++...+.+...+.+ T Consensus 87 ~~~~~~l~~i~~~N~~d~~~~~~~~~a~~~G~a~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~D~~~~~~~~a~~~ 166 (484) T protein:vir:77 87 DKADEQLWDWWQANDLDIESTLGHTDSLVHGRSYITISKPDPNIDPGVDPEVPIIRVEPPTNLYAQIDPRTRQVMRAIRA 166 (484) T ss_pred chhHHHHHHHHHhcCHhHHHHHHHHHHhhcCceEEEEecCCCCcccccccccceEEEeccceeEEEecCCCCceEEEEEE Confidence 1 1111222222223345667788889999999999998888753 2467788888887766533221111000 Q ss_pred -------------------------cCCcce----eeEEEecceEEEecCCCccccccCCCHHHH-HHHHHHHHHHHHHH Q lcl|Aclame:pro 150 -------------------------DDPKIE----PILQAPQSDLIHMKLLSIDGGKTGISPLYS-LRRESKIQRASDRL 199 (392) Q Consensus 150 -------------------------~~~~~~----~~~~~~~~~vih~~~~~~~~~~~G~s~l~~-~~~~i~~~~~~~~~ 199 (392) ..+... ....+..-.|+++.++...+...|.|-+.- +...++..+.+... T Consensus 167 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~N~~~~~~~~G~s~i~~~v~~L~Da~~~~~s~ 246 (484) T protein:vir:77 167 IEDEEGNEVIGATLYLPNNTVIWNREDGQWVQVANVAHNLEMVPVIPIPNRTRLSDLYGTTEITPELRSVTDAAARTLML 246 (484) T ss_pred EEeecCCcEEEEEEEecCeEEEEEecCCceEeeccccCCCCCcceEEeccccccCccCCcccchHHHHHHHHHHHHHHHH Confidence 000000 001122344566665544455567776642 33334443333333 Q ss_pred HHHHHHccCCcceEEee-CCCCC-chHHHHHHHHHHHhccccCCceeecc-CCceEEeccCChhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 200 TISSLNSSLNVPGVLTV-KGGGL-LSDKDKASRSRSFMKRSRSGGPVVLD-DLEEFTALEIKSNVAQLLSQTDWTSKQYA 276 (392) Q Consensus 200 ~~~~~~ng~~~~~i~~~-~~~~~-~~~~~~~~~~~~~~~~~~~g~~~vl~-~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia 276 (392) .....+-.+.|..++.- +.... .++.......+ ...++++.++ ++.++.++..+.-+ -+++..+..+.+|+ T Consensus 247 ~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~q~~~~~~e-~~~~~l~~~i~~~s 320 (484) T protein:vir:77 247 MQATAELMGVPQRLLFGVKGEELGVDPETGQTLFD-----AYLARILAFEDHESKAQQFSAAELR-NFVDALDALDRKAA 320 (484) T ss_pred HHHHHHhhhhhHHHHhCCCcchhcccccccchhhh-----hhhhhhcccCCCCceeEeecCCChH-HHHHHHHHHHHHHh Confidence 22333333344433331 11110 01111111111 1123455655 46788887765433 37888888899999 Q ss_pred HHhcccHHHcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------h-------hhccchhhhhhcC Q lcl|Aclame:pro 277 KVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISELEYKLS------------D-------HISVNMRPAIDPL 337 (392) Q Consensus 277 ~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p~l~~i~~~l~~~l~------------~-------~~~~d~~~~~~~~ 337 (392) .+-++|++.+|+...+.++.++.+..+ ..+.-.+...+..+...|- . .+++.+..-...+ T Consensus 321 ~~~~~p~~~fg~~~~n~~Sg~Al~~~~-~~l~~ka~~k~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~i~v~w~~~~~~s 399 (484) T protein:vir:77 321 AYTGLPPYYLSFSSENPASAEAIRSSE-SRLVKTVERKNKIFGGAWEQAMRVAYKVMNGGDIPPEYYRMESIWRDPSTPT 399 (484) T ss_pred cccCCCHHHhccccCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccceEEecCCCCCC Confidence 999999999987554333443433221 1122222222222221110 0 1112222222334 Q ss_pred hHHHHHHHHHHHhCC--ccCHHHHHHHHHhCCCCCcccccc------------------cCCCCCCCCCCC-------CC Q lcl|Aclame:pro 338 GDNYLSTISTATRWG--ALAENQATFVLQEAGYIPKDLPAP------------------ENTNKKTTGQSN-------EP 390 (392) Q Consensus 338 ~~~~~~~~~~~~~~g--~~t~nE~R~~l~~~g~~~~e~~~~------------------~~~~~~~~gd~~-------~p 390 (392) ..+.+..+.++.++| +++..-+++++ |+.++++-++ .+..+..+|+.+ +| T Consensus 400 ~~~~ad~~~kl~~~g~gi~s~et~~~~l---~~~~~~~~e~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (484) T protein:vir:77 400 YAAKADAATKLYNNGQGVIPKERARIDM---GYSITEREEMRKWDEEEQAQGLGLMGTMFGTDPSGGGNPDNPETPEPQP 476 (484) T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHhcC---CCChhHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCcccccC Confidence 556667777887765 77765555543 5544322111 011111222222 22 Q ss_pred CC Q lcl|Aclame:pro 391 VP 392 (392) Q Consensus 391 ~p 392 (392) .| T Consensus 477 ~~ 478 (484) T protein:vir:77 477 NP 478 (484) T ss_pred CC Confidence 22 No 143 >protein:vir:104082 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655593;genbank:gi:109392464;genbank:GeneID:4156950 Probab=98.72 E-value=5.3e-08 Score=60.49 Aligned_cols=373 Identities=11% Similarity=0.040 Sum_probs=153.7 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchh---hhhcchHHHHHHHHHHHhhhhCceeeecc Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSAR---AALRNSDLFSIILQLSSDLAIVKINAEKK 77 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~al~~~~v~~~i~~ia~~ia~lp~~~~~~ 77 (392) ++=.|.+.+.++..+- .....++ .+... + ..+ +..+..+ .........-+|+.++..+---.+..-+. T Consensus 17 ~~~~l~~~~~~~~~r~--~~~~~Yy-~G~~~-i-~~~----~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~~~~~ 87 (485) T protein:vir:10 17 ARDEMVSAFEDSTQNL--KTNTSYY-EAERR-P-EAI----GVTVPIQMQSLLAHVGYPRLYVDSIAERQAVEGFRFGDA 87 (485) T ss_pred HHHHHHHHHHHHHHHH--HHHHHHH-hcCCc-c-hhc----CCCCChhhhhhhhhcCcHHHHHHHHHhhhcccceecCCC Confidence 1111222111111000 0000000 00000 0 000 0000000 00001122334444444332223332221 Q ss_pred h-hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCce-------eEEEEeccccceeeecCCCceEEE--EE Q lcl|Aclame:pro 78 K-NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGAD-------MKWEYLRPSQVNTYYFEYENGMYY--NI 147 (392) Q Consensus 78 ~-~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~-------~~l~~l~~~~v~~~~~~~~~~~~~--~~ 147 (392) + ....+.+-...-....+...+..+++.+|.||+++.++..+.. ..+.+++|..+.+..+...+.+.. .+ T Consensus 88 ~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~~e~~~~~~~~~~~~~i~~~~p~~~~~~~D~~~~~~~~~~~~ 167 (485) T protein:vir:10 88 DEADEELWQWWQANNLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNTPIIRVEPPTRMYAEIDPRIGRVSKAIRV 167 (485) T ss_pred chhHHHHHHHHHhcCHhHHHHHHHHHHhhcCceEEEEeeCCcccccccCCCeeEEEEEccceeEEEEcCCCCceeEEEEE Confidence 1 1111111111223456667788889999999999988754322 247788888888777654432211 11 Q ss_pred Eec--CCcceeeEE-------------------------EecceEEEecCCCccccccCCCHHHH-HHHHHHHHHHHHHH Q lcl|Aclame:pro 148 TFD--DPKIEPILQ-------------------------APQSDLIHMKLLSIDGGKTGISPLYS-LRRESKIQRASDRL 199 (392) Q Consensus 148 ~~~--~~~~~~~~~-------------------------~~~~~vih~~~~~~~~~~~G~s~l~~-~~~~i~~~~~~~~~ 199 (392) ... +........ +..-.|+|+.+....+..+|.|-+.. +...++..+.+... T Consensus 168 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~ 247 (485) T protein:vir:10 168 AYDAEGNEIQAATLYTPNDIFGWYRVENEWQEWFNNPHGLGVVPVVPIPNRTRLSDLYGTSEITPELRSMTDAAARILML 247 (485) T ss_pred EEeeCCCeEEEEEEEeCCeEEEEEEcCCceEEeccccCCCCcccEEEeccccccCCCCCccchhHHHHHHHHHHHHHHHH Confidence 111 000000111 22234455554433344467775542 33334333333322 Q ss_pred HHHHHHccCCcceEEee-CCCC-CchHHHHHHHHHHHhccccCCceeecc-CCceEEeccCChhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 200 TISSLNSSLNVPGVLTV-KGGG-LLSDKDKASRSRSFMKRSRSGGPVVLD-DLEEFTALEIKSNVAQLLSQTDWTSKQYA 276 (392) Q Consensus 200 ~~~~~~ng~~~~~i~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~~~vl~-~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia 276 (392) .....+-.+.|..++.- +... ..++.......+ ...+.++.++ ++.++.++..+.-+ .+++..+..+.+|+ T Consensus 248 ~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~d~k~~q~~~~~~~-~~~~~l~~~i~~~~ 321 (485) T protein:vir:10 248 MQATAELMGVPQRLIFGIKPEEIGVDPETGQTLFD-----AYLARILAFEDAEGKIQQFSAAELA-NFTNALDQIAKQVA 321 (485) T ss_pred HHHHHHhhcchHHHHhcCCcccccccccccchhhh-----hcccceeccCCCCceEEeecccchH-HHHHHHHHHHHHHh Confidence 22233333344443331 1110 001111111111 1224566665 56788777654432 37888888899999 Q ss_pred HHhcccHHHcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------------hhccchhhhhhcC Q lcl|Aclame:pro 277 KVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISELEYKLSD-------------------HISVNMRPAIDPL 337 (392) Q Consensus 277 ~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p~l~~i~~~l~~~l~~-------------------~~~~d~~~~~~~~ 337 (392) .+=++|++.+|+...+.++..+.+..+. .+.--+...+..+...|-+ .+++.+..-...+ T Consensus 322 ~~~~~p~~~fg~~~~n~~Sg~Al~~~~~-~l~~k~~~k~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~i~v~w~~~~~~~ 400 (485) T protein:vir:10 322 AYTGLPPQYLSTAADNPASAEAIRAAES-RLIKKVERKNSIFGGAWEEAMRLAYRMMKGGDVPPDMLRMETVWRDPSTPT 400 (485) T ss_pred cccCCCHHHhccccCchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccceeeeEEecCCCCCC Confidence 9999999999875543333333332211 1111222222222211110 1111122222234 Q ss_pred hHHHHHHHHHHHhCC--ccCHHHHHHHHHhCCCCCccccccc---------------C----CCCCCCCCCCCCCC Q lcl|Aclame:pro 338 GDNYLSTISTATRWG--ALAENQATFVLQEAGYIPKDLPAPE---------------N----TNKKTTGQSNEPVP 392 (392) Q Consensus 338 ~~~~~~~~~~~~~~g--~~t~nE~R~~l~~~g~~~~e~~~~~---------------~----~~~~~~gd~~~p~p 392 (392) ..+.+..+.+++++| +++..-+++++ |+.++++-+++ . .+..+++++.++.| T Consensus 401 ~~~~ada~~kl~~ag~~~~s~et~~~~l---g~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (485) T protein:vir:10 401 YAAKADAASKLYNGGTGVIPRERARKDM---GYSIAEREEMRRWDEEEAAMGLGLIGTMVDPNPTVPGSPSPAPAP 473 (485) T ss_pred HHHHHHHHHHHHhccccCCCHHHHHHhC---CCCHhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccc Confidence 556677788888766 77877776654 66554332110 0 11112222222222 No 144 >protein:vir:99916 Length: 504 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655520;genbank:gi:109392290;genbank:GeneID:4157085 Probab=98.71 E-value=9e-08 Score=59.21 Aligned_cols=377 Identities=9% Similarity=-0.025 Sum_probs=142.0 Q ss_pred chhhhhhcccccccccccccccccCcchh--hh----hhhccCCC------Ccccchhhhhc-----ch----HHHHHHH Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDA--QI----MESLLGDN------NEWVSARAALR-----NS----DLFSIIL 61 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~------~~~~~~~~al~-----~~----~v~~~i~ 61 (392) |- -+.+ .++.+....+..... .. +..+.... ..++..+..+. .| ....+++ T Consensus 1 ~~---~~~~-----~~~~~~~~~~~l~~~e~~~i~~L~~~~~~~~~r~~~l~~YY~G~~~i~~~~~~~p~~~~~~~~v~n 72 (504) T protein:vir:99 1 MT---EETT-----SASKFTFRIPELNDDVVDKVNGLYQQLVDRTPRNLLRASFYDGKYAIRQIGNLIPPEYLRTATVLG 72 (504) T ss_pred CC---ccCC-----cccccccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccchhccccccHHHHHHhhccC Confidence 10 0100 011111111111111 11 11111110 00111111110 01 1122222 Q ss_pred H---HHHhhhh----Cceeeecch-hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCcee-EEEEeccccc Q lcl|Aclame:pro 62 Q---LSSDLAI----VKINAEKKK-NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADM-KWEYLRPSQV 132 (392) Q Consensus 62 ~---ia~~ia~----lp~~~~~~~-~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~-~l~~l~~~~v 132 (392) . |..+++. -.|.+-+.+ ...-+.+-+..-........+..+.+.||.||+.+..+.+|++. .+.+++|..+ T Consensus 73 ~~~~iVd~~a~rl~~~Gf~~~d~~~~~~~l~~i~~~N~ld~~~~~~~~~a~iyG~af~~v~~~~d~~~~~~I~~~sP~~~ 152 (504) T protein:vir:99 73 WSAKAVDTLARRCNLESFVWPDGDYGSIGGPDVWDENFFATKANNAMVSSLIHGPAFLINTEGGAGEPDSLIHVKSAMQA 152 (504) T ss_pred cHHHHHHHHHhhhccceeeCCCCChhhHHHHHHHHhcChhhHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEecccee Confidence 2 2222221 122221111 11111111111223345567888889999999999998888764 5678899999 Q ss_pred eeeecCCCceEEEEEE---ec-CCcceeeEEEecce------------------------EEEecCCCccccccCCCHHH Q lcl|Aclame:pro 133 NTYYFEYENGMYYNIT---FD-DPKIEPILQAPQSD------------------------LIHMKLLSIDGGKTGISPLY 184 (392) Q Consensus 133 ~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~------------------------vih~~~~~~~~~~~G~s~l~ 184 (392) .+.++...+.+...+. .+ ++.......+.++. |+++.+....+..+|.|.+. T Consensus 153 ~~iyD~~~~~~~~a~~~~~~d~~g~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~gvPvV~~~n~~~~~~~~G~sei~ 232 (504) T protein:vir:99 153 TGEWNSRRNAMDSLLSITSRDAEGHPTGIALYEDGVTVTADMDDDGDWHADVRTHKLGVPVEVLPYKPREDRPLGSSRIT 232 (504) T ss_pred EEEEeCCCCceeEEEEEEEecCCCeEEEEEEEcCCcEEEEEEcCCceeeeccccCCCCcceEEecccccCccccCcccch Confidence 8887764443222111 11 10000011122222 44444333333445766432 Q ss_pred -HHHHHHHHHHHHH---HHHHHHHHccCCcce-EEeeCCC-CCchHHH----HHHHHHHHhccccCCceee-ccCCceEE Q lcl|Aclame:pro 185 -SLRRESKIQRASD---RLTISSLNSSLNVPG-VLTVKGG-GLLSDKD----KASRSRSFMKRSRSGGPVV-LDDLEEFT 253 (392) Q Consensus 185 -~~~~~i~~~~~~~---~~~~~~~~ng~~~~~-i~~~~~~-~~~~~~~----~~~~~~~~~~~~~~g~~~v-l~~g~~~~ 253 (392) .+...++..+... .....++. .|.- ++..+.. ...++.. .+................+ -..+.++. T Consensus 233 ~~v~~l~Da~~~~~~~~~~~~e~~a---~p~r~i~G~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 309 (504) T protein:vir:99 233 RPVMSLQQRALKGCIRMDGHADVYS---FPQLILLGADAKNFRNKDGSMKPAWQIALARVFALPDDEDEPDAARARADVK 309 (504) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc---chhhhhccCCccccccccccccchhhhhhhhhhcCCCccccccccCccceee Confidence 2222333222222 22222332 2322 2222211 1111111 1111111111111111111 12345666 Q ss_pred eccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccc-ccchHHHHHHHHHHHHHHHH----HHHHHHHHHHh--hhh- Q lcl|Aclame:pro 254 ALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGD-QQSSIQQISGMYASALNRYL----RPAISELEYKL--SDH- 325 (392) Q Consensus 254 ~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~-~~~~~~~~~~~~~~~l~p~l----~~i~~~l~~~l--~~~- 325 (392) ++....-+ .|++..+..+..||.+=++|++.+|..+. +.++.++++.- ...+.-.+ +.+.+.+.+.+ .-. T Consensus 310 q~~~~~l~-~~~~~l~~~i~~~a~~t~~P~~~lG~~~~~n~sSa~Ai~~~-~~~L~~ka~~k~~~f~~~l~~~~rla~~~ 387 (504) T protein:vir:99 310 QFPASSPQ-PHIEMLEQIAMMFSGETSIPVESLGFSNRANPTSADAYIAS-REDLIAEAEGATDDWSPAFRRSMIRALAI 387 (504) T ss_pred ecCCCChH-HHHHHHHHHHHHHHhhhCCCHHHhcccccccccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 66554322 47899999999999999999999996543 33344443321 12222222 22223332211 000 Q ss_pred -------------hccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccccccc--------------- Q lcl|Aclame:pro 326 -------------ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAPE--------------- 377 (392) Q Consensus 326 -------------~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~~--------------- 377 (392) ++..+......+..+.+..+.+++++|....-..+..+...|+.+.++.+.+ T Consensus 388 ~~~~~~~~~~~~~~~v~w~d~~~~s~a~~aDa~~Kl~~ag~~l~~~~~~l~~~lg~~~~ei~r~~~e~~~~~~~~~~~~l 467 (504) T protein:vir:99 388 KNGLDRIPPEWKTIDSKFRSPLYLSKAAQADAGAKMLGAGPEWLKETEVGLELLGLTPQQAKRALAERRRASSVSIIEAL 467 (504) T ss_pred hcCCCccccccccceeEecCCCccCHHHHHHHHHHHHhhccccccchHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHH Confidence 1111111222344556677778888775322111222233355544332110 Q ss_pred -C-CCC--CCCCCCCCCCC Q lcl|Aclame:pro 378 -N-TNK--KTTGQSNEPVP 392 (392) Q Consensus 378 -~-~~~--~~~gd~~~p~p 392 (392) + .+. -.++++.+|.+ T Consensus 468 ~~~~~~~~~~~~~~~~~~~ 486 (504) T protein:vir:99 468 NRRQQEAATAGEDQDQGAG 486 (504) T ss_pred hcccCCCCCCCCCCCcCCC Confidence 0 011 11111112211 No 145 >protein:vir:7987 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817341;genbank:gi:29565769;genbank:GeneID:1258964 Probab=98.69 E-value=9.8e-09 Score=64.50 Aligned_cols=381 Identities=11% Similarity=0.019 Sum_probs=161.9 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh- Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN- 79 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~- 79 (392) -+..+.+........- .....++- +.. .+...........-.....+.......+|+..+..+-.-|+.....+. T Consensus 9 ~~~~l~~~~~~~~~r~--~~l~~Yy~-g~~-~i~~~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~~~~~~d~ 84 (456) T protein:vir:79 9 WLPVLTKRIDDGMSRV--RLLARYSN-GDA-PLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSADS 84 (456) T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHh-ccC-ChhhcCcccChhhchhhhhhhcchHHHHHHHHHhhhccCCeecCCCCCc Confidence 1111111111100000 00000000 000 000000000000000000111223455677777666566776532211 Q ss_pred --hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCce-E-EE-EEE-ecCCc Q lcl|Aclame:pro 80 --QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENG-M-YY-NIT-FDDPK 153 (392) Q Consensus 80 --~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~-~-~~-~~~-~~~~~ 153 (392) ...+.+-...-....+.+.+..+++.+|.||+.+..+.+|.+ .+..++|..+.+.++..... + .. .++ ..+.. T Consensus 85 ~~~~~~~~~~~~n~~d~~~~~~~~~a~~~G~a~~~~~~~edg~~-~i~~~~p~~~~~i~d~~~~~~~~~~~~~~~~~d~~ 163 (456) T protein:vir:79 85 DLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRSAMRWWRDLDAE 163 (456) T ss_pred cHHHHHHHHHHhcChhHHHHHHHHHHhhcCeeEEEEeeCCCCce-EEEEeccceeEEEEcCCCCCceEEEEEEEEecCCc Confidence 111111111112345567788899999999999999999987 47888898888877643221 1 00 000 00000 Q ss_pred ceeeEE-------------------------------EecceEEEecCCC---ccccccCCCHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 154 IEPILQ-------------------------------APQSDLIHMKLLS---IDGGKTGISPLYSLRRESKIQRASDRL 199 (392) Q Consensus 154 ~~~~~~-------------------------------~~~~~vih~~~~~---~~~~~~G~s~l~~~~~~i~~~~~~~~~ 199 (392) ...... .+..++-|.-... +.....|+|-+......++....+..- T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~~~gd~e~v~~liD~~~~~~s~ 243 (456) T protein:vir:79 164 SDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQ 243 (456) T ss_pred eeEEEEEcCCceEEEEEEEEeeccccceeeeccCCceeecccccCCCCceeEEEecCCCCCchhhhhHHHHHHHHHHHHH Confidence 000000 0001111110000 001124677777666666554444322 Q ss_pred HHHHHHccCCcceEEeeCC-CCCchHHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 200 TISSLNSSLNVPGVLTVKG-GGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKV 278 (392) Q Consensus 200 ~~~~~~ng~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~ 278 (392) .....+..+.|..++.-.. .....+..-........-....+.++.+++|.++.++..+.- ..+.+..+....+|+.. T Consensus 244 ~~~~~~~~a~~~~~~~G~~~~~~~~d~~g~~i~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~-~~~~~~l~~~i~~i~~~ 322 (456) T protein:vir:79 244 LLSTMAIQAFRQRALKSSEHRLPKVDENGNAIDYASIFEAAPGALWELPPGVDIWESQTNDF-TPMLSAIKEHIRQLSSA 322 (456) T ss_pred HHHHHHHHhhHHHHHhcCCcccccccccccccchhhhhhhhccccccCCCCcceeeecccCh-HHHHHHHHHHHHHHHhh Confidence 2222233233332222111 110001000000000001112245667788999888765432 23788899999999999 Q ss_pred hcccHHHcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------hhccchhhhhhcChHHHHH Q lcl|Aclame:pro 279 YGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISELEYKLSD---------------HISVNMRPAIDPLGDNYLS 343 (392) Q Consensus 279 fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p~l~~i~~~l~~~l~~---------------~~~~d~~~~~~~~~~~~~~ 343 (392) -++|++.+|+...+. +.++++..+. .+.--+...+..|...|-. .++..+..-...+..+.+. T Consensus 323 t~~p~~~~~~~~~N~-Sg~Al~~~~~-~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~w~~~~~~s~~~~ad 400 (456) T protein:vir:79 323 TKTPLPMLMPDSANQ-SAEGAHNIEK-GFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYS 400 (456) T ss_pred cCCChhHhcccccCc-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEeCCCCCcCHHHHHH Confidence 999999998754333 3333332221 1222223333333322211 1111111111234456677 Q ss_pred HHHHHHhCCccCHHHHHHHHHhCCCCCccccc------ccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 344 TISTATRWGALAENQATFVLQEAGYIPKDLPA------PENTNKKTTGQSNEPVP 392 (392) Q Consensus 344 ~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~------~~~~~~~~~gd~~~p~p 392 (392) .+.++.+.|+.+..-+++++ |+.+.++.. .+......++-.+.|=| T Consensus 401 a~~kl~~~G~~~~~~~~~~l---g~~~~~i~~~e~~r~~~e~~~~~~~~~~~~~~ 452 (456) T protein:vir:79 401 AASLAKAAGESWASIRRNIL---NYNADQIKQDDLDRAREQITLFAGNPVQRPQE 452 (456) T ss_pred HHHHHHhcCCChHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhhhHhhcCCC Confidence 77788889999987776654 776654432 22222222233333333 No 146 >protein:vir:102602 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654999;genbank:gi:109392189;genbank:GeneID:4157224 Probab=98.67 E-value=8.3e-08 Score=59.41 Aligned_cols=380 Identities=11% Similarity=0.016 Sum_probs=167.6 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCC-CCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGD-NNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN 79 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~ 79 (392) .+..+.+........- .....++ .+.. .+. .+... ....-....-+.+.-..-+|+..+..+-.-|+.+...+. T Consensus 9 ~~~~l~~~~~~~~~r~--~~l~~Yy-~g~~-~i~-~~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~~~~~~~~~~d 83 (456) T protein:vir:10 9 WLPVLTKRIDDGMSRV--RLLARYS-NGDA-PLP-ELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSAD 83 (456) T ss_pred HHHHHHHHHHHHHHHH--HHHHHHH-hcCC-Cch-hcCcccChhhhhhhhhhhcchHHHHHHHHHhhhccCCeecCCCCC Confidence 2222222111110000 0000000 0000 000 00000 000000001112233456677777766666776643211 Q ss_pred ---hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEE--E--EEEe-cC Q lcl|Aclame:pro 80 ---QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMY--Y--NITF-DD 151 (392) Q Consensus 80 ---~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~--~--~~~~-~~ 151 (392) ...+.+-...-....+...+..+++.+|.||+++.++.+|.+. +..++|..+.+.++...+... . ++.. +. T Consensus 84 ~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~~~-i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~d~ 162 (456) T protein:vir:10 84 SDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTAT-ITADSPETMVVSVDPLQPWRIRAAMRWWRDLDA 162 (456) T ss_pred cchHHHHHHHHHhcChhhHHHHHHHHHhhcCeeEEEEeeCCCCceE-EEEEccceeEEEEcCCCCcceEEEEEEEEecCC Confidence 1111111111123455567888899999999999999998764 678888888887775442110 0 0100 00 Q ss_pred Ccce------------------------eeEEEecce------EEEecCCCc---cccccCCCHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 152 PKIE------------------------PILQAPQSD------LIHMKLLSI---DGGKTGISPLYSLRRESKIQRASDR 198 (392) Q Consensus 152 ~~~~------------------------~~~~~~~~~------vih~~~~~~---~~~~~G~s~l~~~~~~i~~~~~~~~ 198 (392) .... ......... .-|.-...+ .....|+|-+......++..+.+.. T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~g~gd~e~vi~liDa~~~~~s 242 (456) T protein:vir:10 163 ESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAEL 242 (456) T ss_pred ceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEEEecCCCCCchhhhhHHHHHHHHHHHH Confidence 0000 000000000 001000000 0112477877777666666555543 Q ss_pred HHHHHHHccCCcceEEee-CCCCCchHHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 199 LTISSLNSSLNVPGVLTV-KGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAK 277 (392) Q Consensus 199 ~~~~~~~ng~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~ 277 (392) -........+.|..++.- +......+................+.++.++++.++.++..+.- ..+.+..+..+.+|++ T Consensus 243 ~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~-~~~~~~l~~~i~~~~~ 321 (456) T protein:vir:10 243 QLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWESQANDF-TPMLSAIKEHIRQLSS 321 (456) T ss_pred HHHHHHHHhhhHhHhhhccCcccccccccccccchhhhhhhhccccccCCCCcceEEecccCh-hHHHHHHHHHHHHHHh Confidence 333333333333333321 11111011100000000001112345677889999888765432 2378889999999999 Q ss_pred HhcccHHHcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------hhccchhhhhhcChHHHH Q lcl|Aclame:pro 278 VYGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISELEYKLSD---------------HISVNMRPAIDPLGDNYL 342 (392) Q Consensus 278 ~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p~l~~i~~~l~~~l~~---------------~~~~d~~~~~~~~~~~~~ 342 (392) .-++|++.+|+..++. +.++++.. ...+.--+...+..|...|-. .+...+....-.+..+.+ T Consensus 322 ~s~~p~~~~~~~~~N~-Sg~Ai~~~-~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~g~~~~~~~~v~w~~~~~~~~~~~a 399 (456) T protein:vir:10 322 ATKTPLPMLMPDSANQ-SAEGAHNI-EKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKY 399 (456) T ss_pred ccCCChHHhcccccCh-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeEEecCCCCcCHHHHH Confidence 9999999998754332 33333322 222223333333333322211 111112222223455677 Q ss_pred HHHHHHHhCCccCHHHHHHHHHhCCCCCccccc------ccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 343 STISTATRWGALAENQATFVLQEAGYIPKDLPA------PENTNKKTTGQSNEPVP 392 (392) Q Consensus 343 ~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~------~~~~~~~~~gd~~~p~p 392 (392) ..+.++.+.|+.+..-+++++ |+.+.++.. .+......++-.+.|-| T Consensus 400 da~~kl~~~gi~~~~~~~~~l---g~~~~~i~~~e~er~~~e~~~~~~~~~~~~~~ 452 (456) T protein:vir:10 400 SAASLAKAAGESWASIRRNIL---NYNADQIKQDDLDRAREQITLFAGNPVQRPQE 452 (456) T ss_pred HHHHHHHHcCCChHHHHHhhC---CCCHHHHHHHHHHHHHHHHHHHhhhhhhcCCC Confidence 777888888999988777655 777654432 12222222233344444 No 147 >protein:vir:105819 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655764;genbank:gi:109522087;genbank:GeneID:4157627 Probab=98.67 E-value=8.3e-08 Score=59.41 Aligned_cols=380 Identities=11% Similarity=0.016 Sum_probs=167.6 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCC-CCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGD-NNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN 79 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~ 79 (392) .+..+.+........- .....++ .+.. .+. .+... ....-....-+.+.-..-+|+..+..+-.-|+.+...+. T Consensus 9 ~~~~l~~~~~~~~~r~--~~l~~Yy-~g~~-~i~-~~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~~~~~~~~~~d 83 (456) T protein:vir:10 9 WLPVLTKRIDDGMSRV--RLLARYS-NGDA-PLP-ELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSAD 83 (456) T ss_pred HHHHHHHHHHHHHHHH--HHHHHHH-hcCC-Cch-hcCcccChhhhhhhhhhhcchHHHHHHHHHhhhccCCeecCCCCC Confidence 2222222111110000 0000000 0000 000 00000 000000001112233456677777766666776643211 Q ss_pred ---hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEE--E--EEEe-cC Q lcl|Aclame:pro 80 ---QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMY--Y--NITF-DD 151 (392) Q Consensus 80 ---~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~--~--~~~~-~~ 151 (392) ...+.+-...-....+...+..+++.+|.||+++.++.+|.+. +..++|..+.+.++...+... . ++.. +. T Consensus 84 ~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~~~-i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~d~ 162 (456) T protein:vir:10 84 SDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTAT-ITADSPETMVVSVDPLQPWRIRAAMRWWRDLDA 162 (456) T ss_pred cchHHHHHHHHHhcChhhHHHHHHHHHhhcCeeEEEEeeCCCCceE-EEEEccceeEEEEcCCCCcceEEEEEEEEecCC Confidence 1111111111123455567888899999999999999998764 678888888887775442110 0 0100 00 Q ss_pred Ccce------------------------eeEEEecce------EEEecCCCc---cccccCCCHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 152 PKIE------------------------PILQAPQSD------LIHMKLLSI---DGGKTGISPLYSLRRESKIQRASDR 198 (392) Q Consensus 152 ~~~~------------------------~~~~~~~~~------vih~~~~~~---~~~~~G~s~l~~~~~~i~~~~~~~~ 198 (392) .... ......... .-|.-...+ .....|+|-+......++..+.+.. T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~g~gd~e~vi~liDa~~~~~s 242 (456) T protein:vir:10 163 ESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAEL 242 (456) T ss_pred ceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEEEecCCCCCchhhhhHHHHHHHHHHHH Confidence 0000 000000000 001000000 0112477877777666666555543 Q ss_pred HHHHHHHccCCcceEEee-CCCCCchHHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 199 LTISSLNSSLNVPGVLTV-KGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAK 277 (392) Q Consensus 199 ~~~~~~~ng~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~ 277 (392) -........+.|..++.- +......+................+.++.++++.++.++..+.- ..+.+..+..+.+|++ T Consensus 243 ~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~-~~~~~~l~~~i~~~~~ 321 (456) T protein:vir:10 243 QLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWESQANDF-TPMLSAIKEHIRQLSS 321 (456) T ss_pred HHHHHHHHhhhHhHhhhccCcccccccccccccchhhhhhhhccccccCCCCcceEEecccCh-hHHHHHHHHHHHHHHh Confidence 333333333333333321 11111011100000000001112345677889999888765432 2378889999999999 Q ss_pred HhcccHHHcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------hhccchhhhhhcChHHHH Q lcl|Aclame:pro 278 VYGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISELEYKLSD---------------HISVNMRPAIDPLGDNYL 342 (392) Q Consensus 278 ~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p~l~~i~~~l~~~l~~---------------~~~~d~~~~~~~~~~~~~ 342 (392) .-++|++.+|+..++. +.++++.. ...+.--+...+..|...|-. .+...+....-.+..+.+ T Consensus 322 ~s~~p~~~~~~~~~N~-Sg~Ai~~~-~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~g~~~~~~~~v~w~~~~~~~~~~~a 399 (456) T protein:vir:10 322 ATKTPLPMLMPDSANQ-SAEGAHNI-EKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKY 399 (456) T ss_pred ccCCChHHhcccccCh-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeEEecCCCCcCHHHHH Confidence 9999999998754332 33333322 222223333333333322211 111112222223455677 Q ss_pred HHHHHHHhCCccCHHHHHHHHHhCCCCCccccc------ccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 343 STISTATRWGALAENQATFVLQEAGYIPKDLPA------PENTNKKTTGQSNEPVP 392 (392) Q Consensus 343 ~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~------~~~~~~~~~gd~~~p~p 392 (392) ..+.++.+.|+.+..-+++++ |+.+.++.. .+......++-.+.|-| T Consensus 400 da~~kl~~~gi~~~~~~~~~l---g~~~~~i~~~e~er~~~e~~~~~~~~~~~~~~ 452 (456) T protein:vir:10 400 SAASLAKAAGESWASIRRNIL---NYNADQIKQDDLDRAREQITLFAGNPVQRPQE 452 (456) T ss_pred HHHHHHHHcCCChHHHHHhhC---CCCHHHHHHHHHHHHHHHHHHHhhhhhhcCCC Confidence 777888888999988777655 777654432 12222222233344444 No 148 >protein:vir:80680 Length: 441 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285579;genbank:gi:148727085;genbank:GeneID:5247051 Probab=98.67 E-value=1.3e-07 Score=58.35 Aligned_cols=363 Identities=11% Similarity=0.019 Sum_probs=155.6 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccch---hhhhcchHHHHHHHHHHHhhhhCceeeecc Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSA---RAALRNSDLFSIILQLSSDLAIVKINAEKK 77 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~al~~~~v~~~i~~ia~~ia~lp~~~~~~ 77 (392) ++=.|.+.+.+....- .....++ .+.. .+ ...+..+.+ ...+.+.-..-+|+..+..+---.+..-+. T Consensus 8 ~i~~l~~~~~~~~~r~--~~l~~Yy-~G~~-~i-----~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~~g~~~~d~ 78 (441) T protein:vir:80 8 LIEGMYDRIQRLSSWH--CCIEGYY-EGSN-RV-----RDLGVAIPPELQRVQTVVSWPGIAVDALEERLDWLGWTNGDG 78 (441) T ss_pred HHHHHHHHHHHHHHHH--HHHHHHH-hcCC-cc-----hhcCcccchhhhhhhhhcchHHHHHHHHHhhhccccccCCCh Confidence 2222222111110000 0000000 0000 00 000000100 000111122334444433331111221111 Q ss_pred hhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEE---EEEecCCcc Q lcl|Aclame:pro 78 KNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYY---NITFDDPKI 154 (392) Q Consensus 78 ~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~---~~~~~~~~~ 154 (392) + -+.+-...-........+..+++.+|.||+++.++.+|.+ .+.+++|..|.+.++...+.... .+....... T Consensus 79 ~---~l~~i~~~n~~~~~~~~~~~~~~~~G~a~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~~~~~~~~~~~ 154 (441) T protein:vir:80 79 Y---GLDGVYAANRLATASCDVHLDALIFGLSFVAIIPHGDGTV-SVRPQSPKNCTGKFSADGSRLDAGLVVQQTCDPEV 154 (441) T ss_pred H---HHHHHHHhcCHHHHHHHHHHHHhhcCeeEEEEEeCCCCce-EEEEEccceEEEEEeCCCCceeEEEEEEEEecCce Confidence 1 1111111124566777888899999999999999999987 47889999998877654322110 111110000 Q ss_pred e--------------------------eeEEEecceEEEecCCCccccccCCCHHHH-HHHHHHHHHHHHHHHHHHHHcc Q lcl|Aclame:pro 155 E--------------------------PILQAPQSDLIHMKLLSIDGGKTGISPLYS-LRRESKIQRASDRLTISSLNSS 207 (392) Q Consensus 155 ~--------------------------~~~~~~~~~vih~~~~~~~~~~~G~s~l~~-~~~~i~~~~~~~~~~~~~~~ng 207 (392) . ....+..-.|+|+.+....+...|.|-+.- +...++.......-.....+-. T Consensus 155 ~~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~l~~~v~~liDa~~~~~s~~~~~~~~~ 234 (441) T protein:vir:80 155 VEAELLLPDVIVQVERRGSREWVEVDRIPNVLGAVPLVPIVNRRRTSRIDGRSEITRSIRAYTDEAVRTLLGQSVNRDFY 234 (441) T ss_pred EEEEEEecCeEEEEEEcCCcceeeccccccCCCceeEEEeeccccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHhh Confidence 0 011222334566655444444567775542 4444554444444444444444 Q ss_pred CCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeeccC-----CceEEeccCChhhHHHHHHHHHHHHHHHHHhccc Q lcl|Aclame:pro 208 LNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDD-----LEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLP 282 (392) Q Consensus 208 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~-----g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP 282 (392) +.|-.++.-- ......... +. ...++++.+++ +.++.++..+..+ .+++..+..+..|+..-++| T Consensus 235 ~~~~~~i~G~-~~~~~~~~~--~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~i~~~~~~~~~p 304 (441) T protein:vir:80 235 AYPQRWVTGV-SADEFSQPG--WV------LSMASVWAVDKDDDGDTPNVGSFPVNSPT-PYSDQMRLLAQLTAGEAAVP 304 (441) T ss_pred cCceeeeecC-Cccccccch--hh------hcccccccCCCCCCCCcceeEecCccchH-HHHHHHHHHHHHHhcccCCC Confidence 5565555421 111111110 00 01223333332 3455555543222 36788888899999999999 Q ss_pred HHHcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------------------hhccchhhhhhcChHHHH Q lcl|Aclame:pro 283 DSYIGGQGDQQSSIQQISGMYASALNRYLRPAISELEYKLSD--------------------HISVNMRPAIDPLGDNYL 342 (392) Q Consensus 283 ~~~lg~~~~~~~~~~~~~~~~~~~l~p~l~~i~~~l~~~l~~--------------------~~~~d~~~~~~~~~~~~~ 342 (392) ++.+|+.+.+.++..+++..+. .+.-.+...+..+...|-. .+++.+..-...+..+.+ T Consensus 305 ~~~~g~~~~~~~Sg~Al~~~~~-~l~~k~~~~~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~e~a 383 (441) T protein:vir:80 305 ERYFGFITSNPPSGEALAAEES-RLVKRAERRQTSFGQGWLSVGFLAAKALDSRVDEADFFGDVGLRWRDASTPTRAATA 383 (441) T ss_pred HHHhccCCCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccceeeeEEeCCCCCcCHHHHH Confidence 9999876554334444332222 2222222233322222211 111112222223445666 Q ss_pred HHHHHHHhCCccCH--HHHHHHHHhCCCCCcccccccC-----------CCCCCCCCCCCC Q lcl|Aclame:pro 343 STISTATRWGALAE--NQATFVLQEAGYIPKDLPAPEN-----------TNKKTTGQSNEP 390 (392) Q Consensus 343 ~~~~~~~~~g~~t~--nE~R~~l~~~g~~~~e~~~~~~-----------~~~~~~gd~~~p 390 (392) ..+.++.++|+... ..+++ ..|+.++++.+++. +++...++.++= T Consensus 384 d~~~kl~~~g~~~~s~~~~~~---~l~~~~~e~~~~~~e~~e~~~~~~~~~~~~~~~~~~~ 441 (441) T protein:vir:80 384 DAVTKLVGAGILPADSRTVLE---MLGLDDVQVEAVMRHRAESSDPLAVLAGAISRQTNEV 441 (441) T ss_pred HHHHHHHhcCcccccHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhcccccC Confidence 77778888887543 23333 34666665543321 122222222222 No 149 >protein:vir:2427 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046829;genbank:gi:9630397;genbank:GeneID:1261620 Probab=98.66 E-value=1.3e-07 Score=58.32 Aligned_cols=375 Identities=11% Similarity=0.035 Sum_probs=152.1 Q ss_pred Ccchh---------hh-hhcccccccccc-cccccccCcchhhhhhhccCCCCcccchh---hhhcchHHHHHHHHHHHh Q lcl|Aclame:pro 1 MILPI---------LN-FINQTNDPPEAG-SVQSYFPDGNDAQIMESLLGDNNEWVSAR---AALRNSDLFSIILQLSSD 66 (392) Q Consensus 1 m~Mg~---------~n-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~al~~~~v~~~i~~ia~~ 66 (392) -++|+ .+ +++.-.....+- ....++ .+... + . ..+..+..+ ....+....-+|+..+.. T Consensus 4 ~i~~~~~~~~~~~~~~~L~~~~~~~~~r~~~~~~YY-~G~~~-i-~----~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~ 76 (485) T protein:vir:24 4 PLPGQEEIADPAIARDEMVSAFEDQNQNLRSNTSYY-EAERR-P-E----AIGVTVPVQMQSLLAHVGYPRLYVDSIAER 76 (485) T ss_pred CCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH-hccCc-h-h----hcCcccchhhhhhhhccchHHHHHHHHhhh Confidence 11111 00 010000000000 000000 00000 0 0 000000000 000111223344444443 Q ss_pred hhhCceeeecchh-hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCcee-------EEEEeccccceeeecC Q lcl|Aclame:pro 67 LAIVKINAEKKKN-QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADM-------KWEYLRPSQVNTYYFE 138 (392) Q Consensus 67 ia~lp~~~~~~~~-~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~-------~l~~l~~~~v~~~~~~ 138 (392) +---++.+-+.+. +..+.+=...-....+...+..+++.+|.||+++.++.++.+. .+.+++|..+.+.++. T Consensus 77 l~~~g~~~~~~~~~~~~l~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~~i~D~ 156 (485) T protein:vir:24 77 QAVEGFRLGDADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNVPLIRVEPPTRMYAEIDP 156 (485) T ss_pred hccCceecCCCchhHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCcceEEEeccceeEEEeeC Confidence 3233454433211 1111110011134456778888999999999999887665322 4678888888777765 Q ss_pred CCceEEEEE--Eec--CCcce-------------------------eeEEEecceEEEecCCCccccccCCCHHH-HHHH Q lcl|Aclame:pro 139 YENGMYYNI--TFD--DPKIE-------------------------PILQAPQSDLIHMKLLSIDGGKTGISPLY-SLRR 188 (392) Q Consensus 139 ~~~~~~~~~--~~~--~~~~~-------------------------~~~~~~~~~vih~~~~~~~~~~~G~s~l~-~~~~ 188 (392) ..+.+...+ ... +.... ....+..-.|+|+++....+..+|.|-+. .+.. T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~~~~~G~s~i~~~v~~ 236 (485) T protein:vir:24 157 RIGRPAKAIRVAYDAEGNEIQAATLYTPNETFGWFRAEGEWVEWFSDPHGLGAVPVVPLPNRTRLSDLYGTSEITPELRS 236 (485) T ss_pred CcCceeEEEEEEEeecCCeEEEEEEEcCCcEEEEEecCCceEeecccccCCCcccEEEeccCcccCCcCCcccchhhHHH Confidence 432211110 000 00000 01122234445665544444456777665 3444 Q ss_pred HHHHHHHHHHHHHHHHHccCCcceEEee-CCCC-CchHHHHHHHHHHHhccccCCceeecc-CCceEEeccCChhhHHHH Q lcl|Aclame:pro 189 ESKIQRASDRLTISSLNSSLNVPGVLTV-KGGG-LLSDKDKASRSRSFMKRSRSGGPVVLD-DLEEFTALEIKSNVAQLL 265 (392) Q Consensus 189 ~i~~~~~~~~~~~~~~~ng~~~~~i~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~~~vl~-~g~~~~~l~~~~~d~~~~ 265 (392) .++....+..-.....+-.+.|..++.- +... ...+....... ....|.++.++ ++.++.++..+.-+ .++ T Consensus 237 liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~q~~~~~~e-~~~ 310 (485) T protein:vir:24 237 MTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVDPETGQTLF-----DAYLARILAFEDAEGKIQQFSAAELA-NFT 310 (485) T ss_pred HHHHHHHHHHHHHHHHHhhcchhhhhccCCccccccccccccchh-----hhcccceeccCCCCceEEeecccchH-HHH Confidence 4554444433333334444445444432 1110 00111111111 11234456664 56788777654433 377 Q ss_pred HHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------------hh Q lcl|Aclame:pro 266 SQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISELEYKLSD-------------------HI 326 (392) Q Consensus 266 e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p~l~~i~~~l~~~l~~-------------------~~ 326 (392) +..+..+.+++..=++|++.+|+...+.++..+++..+ ..+.--+...+..+...|-. .+ T Consensus 311 ~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~-~~l~~ka~~~~~~f~~~l~~~~~l~~~~~~~~~~~~d~~~i 389 (485) T protein:vir:24 311 NALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAE-SRLIKKVERKNAIFGGAWEEAMRLAYRLMKGGDVPPDMLRM 389 (485) T ss_pred HHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccee Confidence 88888888999999999999987654333333333221 22222223333332222210 11 Q ss_pred ccchhhhhhcChHHHHHHHHHHHhCC--ccCHHHHHHHHHhCCCCCccccccc---------------C---CCCC---- Q lcl|Aclame:pro 327 SVNMRPAIDPLGDNYLSTISTATRWG--ALAENQATFVLQEAGYIPKDLPAPE---------------N---TNKK---- 382 (392) Q Consensus 327 ~~d~~~~~~~~~~~~~~~~~~~~~~g--~~t~nE~R~~l~~~g~~~~e~~~~~---------------~---~~~~---- 382 (392) ++.+..-...+..+.+..+.+++++| +++..-+++++ |+.++++-+++ . ..+. T Consensus 390 ~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~l---~~~~d~~~e~~~~~ee~~~~~~~~~~~~~~~~~~~~~~ 466 (485) T protein:vir:24 390 ETVWRDPSTPTYAAKADAATKLYGNGQGVIPRERARKDM---GYSIAEREEMRRWDEEEAAMGLGLLGTMVDADPTVPGS 466 (485) T ss_pred eEEecCCCCCCHHHHHHHHHHHHhcccccCCHHHHHhhC---CCCHhHHHHHHHHHHHHhhhhhhHHHhhcccCCCCCCC Confidence 11111111234455666677777655 56655444433 44433211110 0 0010 Q ss_pred ---CCCCCCCCCC Q lcl|Aclame:pro 383 ---TTGQSNEPVP 392 (392) Q Consensus 383 ---~~gd~~~p~p 392 (392) +.-++.+|+| T Consensus 467 ~~~~e~~~~~~~~ 479 (485) T protein:vir:24 467 PNPTPAPKPQPAI 479 (485) T ss_pred CCCCCCCCCccCC Confidence 0111112222 No 150 >protein:vir:94742 Length: 409 # NCBI annotation: putative portal protein # Family: family:all:524 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996701;genbank:gi:45597416;genbank:GeneID:2767966 Probab=98.60 E-value=2.2e-07 Score=57.09 Aligned_cols=343 Identities=10% Similarity=-0.015 Sum_probs=148.2 Q ss_pred Ccchhhhhhcccccc-ccccc-ccccccCcchhhhhhhccCCCCcccchhh----hhcchHHHHHHHHHHHhhhhCceee Q lcl|Aclame:pro 1 MILPILNFINQTNDP-PEAGS-VQSYFPDGNDAQIMESLLGDNNEWVSARA----ALRNSDLFSIILQLSSDLAIVKINA 74 (392) Q Consensus 1 m~Mg~~n~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----al~~~~v~~~i~~ia~~ia~lp~~~ 74 (392) |=.-+++.+.+.-.. ..+.. ...++ .+.. .+ ..-+..+.++- -+......-+|+-+|..+ -+.- T Consensus 1 ~~~~~i~~L~~~~~~~~~r~~~~~~yY-~g~~-----~~-~~~~~~~p~~~~~~~~~v~nw~~~iVds~a~rl---~~~G 70 (409) T protein:vir:94 1 MTEKGIGYLRFKLSVHKRRAEMRYDQY-AMKY-----VD-RFKGITIPQALSQQYRSILGWCAKGVDSLADRL---VFRE 70 (409) T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHh-cccC-----ch-hhcChhhhHHHHHHHhhhcchhHHHHHHhHhhc---ccCc Confidence 333333332221000 00000 00000 0000 00 00000111110 000111222333333322 2222 Q ss_pred ecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEec-CCc Q lcl|Aclame:pro 75 EKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFD-DPK 153 (392) Q Consensus 75 ~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~-~~~ 153 (392) ++.+...+ .+-...-........+..+.+.+|.+|+.+..+.+|.| .+.+++|..+.+.+|...+.+...+.+. ... T Consensus 71 f~~~d~~l-~~i~~~N~ld~~~~~~~~~aliyG~sf~~v~~~~dg~~-~i~~~sp~~~~~i~D~~~~~~~~a~~~~~~d~ 148 (409) T protein:vir:94 71 FENDDFTV-NEIFEENNPDIFFDSAVLSSLIASCSFTYISKGENDAV-RLQVIEAVNATGIIDPITGLLTEGYAVLERDE 148 (409) T ss_pred ccCCchHH-HHHHHhcChhHHHHHHHHHHHHhcceeEEEecCCCCce-EEEEeccceEEEEEecCCCceeeeEEEEEecC Confidence 22111111 11111122334555677888899999999999999986 5788999988888877554443322211 100 Q ss_pred ce---eeEE----------------------EecceEEEecCCCccccccCCCHH----HHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 154 IE---PILQ----------------------APQSDLIHMKLLSIDGGKTGISPL----YSLRRESKIQRASDRLTISSL 204 (392) Q Consensus 154 ~~---~~~~----------------------~~~~~vih~~~~~~~~~~~G~s~l----~~~~~~i~~~~~~~~~~~~~~ 204 (392) .+ .... +..-.|++|.+....+...|.|.+ ..+.+.+.....-......++ T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~vPvV~f~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~~e~~ 228 (409) T protein:vir:94 149 NNNVVLEAHFLPDRTDYYYRDSRNNISIANPTGHPLLVPIIHRPDAVRPFGRSRITRSGMYWQSNAKRTLERADVTAEFY 228 (409) T ss_pred CCceEEEEEEecCcEEEEEecCceeEeeeCCCCCcceEEeccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHh Confidence 00 0011 112234445443333445677754 333333333332223333444 Q ss_pred HccCCcc-eEEeeCCCCCchHHHHHHHHHHHhccccCCceeecc-----CCceEEeccCChhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 205 NSSLNVP-GVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLD-----DLEEFTALEIKSNVAQLLSQTDWTSKQYAKV 278 (392) Q Consensus 205 ~ng~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~ 278 (392) .+ |. .++.++.+....+...... ++++.++ ++.++.++..+.-+ .|++..+....++|.+ T Consensus 229 a~---pqr~i~G~d~d~~~~~~~~~~~----------~~i~~~~~d~dg~~~~v~q~~~~~l~-~~~~~l~~~~~~~a~~ 294 (409) T protein:vir:94 229 SF---PQKYVTGLSDDAEPMETWKATV----------SSMLQFTKDEDGDKPTLGQFTQPSMS-PFTEQLRTAAAGFAGE 294 (409) T ss_pred cC---hhheeEecCCCCcccchhhhhH----------HHhhcCCCCCCCCCceEEecCCCChh-HHHHHHHHHHHHHhhh Confidence 33 43 3444443322222111111 1223332 34567666543322 4889999999999999 Q ss_pred hcccHHHcCCcccccchHHHHHHHHHH---HHHHHHHHHHHHHHHHh--h----h----------hhccchhhhhhcChH Q lcl|Aclame:pro 279 YGLPDSYIGGQGDQQSSIQQISGMYAS---ALNRYLRPAISELEYKL--S----D----------HISVNMRPAIDPLGD 339 (392) Q Consensus 279 fgVP~~~lg~~~~~~~~~~~~~~~~~~---~l~p~l~~i~~~l~~~l--~----~----------~~~~d~~~~~~~~~~ 339 (392) -++|++.+|+.+++.++.++.++.... ...-.-+.+.+.+.+.+ . . .+++.+......+.. T Consensus 295 t~lP~~~lg~~~~NpsSa~Al~a~~~~L~~~a~~k~~~fg~~~~~~~rla~~i~~~~~~~~~~~~~~~v~W~p~~~~~~~ 374 (409) T protein:vir:94 295 TGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYLAACLRDDAPYLREQFRKTKPKWEPLFEADAS 374 (409) T ss_pred cCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccceEEeccCCCcchH Confidence 999999999866543444444322111 11111111222222211 0 0 011112222233332 Q ss_pred ---HHHHHHHHHHhCC--ccCHHHHHHHHHhCCCCCcc Q lcl|Aclame:pro 340 ---NYLSTISTATRWG--ALAENQATFVLQEAGYIPKD 372 (392) Q Consensus 340 ---~~~~~~~~~~~~g--~~t~nE~R~~l~~~g~~~~e 372 (392) ..+..+.+++++| ++..+-+++.| |+...| T Consensus 375 ~~a~~aDa~~Kl~~ag~~~~~~~~~~~~l---G~~~~d 409 (409) T protein:vir:94 375 MLSLIGDGAIKLNQAIPEFINKDTIRDLT---GIEGGE 409 (409) T ss_pred HHHHHHHHHHHHHHhcccccchhHHHHHc---CCCCCC Confidence 3345677888887 55566666554 777655 No 151 >protein:vir:4223 Length: 486 # NCBI annotation: predicted 53.7Kd protein # Family: family:all:524 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039678;swissprot:sw:q05220;genbank:gi:9625444;uniprot:Q05220;genbank:GeneID:2942930;interpro:IPR010859 Probab=98.55 E-value=2.9e-07 Score=56.43 Aligned_cols=369 Identities=11% Similarity=0.045 Sum_probs=148.2 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchh---hhhcchHHHHHHHHHHHhhhhCceeeecc Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSAR---AALRNSDLFSIILQLSSDLAIVKINAEKK 77 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~al~~~~v~~~i~~ia~~ia~lp~~~~~~ 77 (392) ++=.+...+..+..+. .....++ .+.. .+.. -+..+..+ .........-+|+.++..+--..+.+-+. T Consensus 17 ~~~~l~~~~~~~~~r~--~~l~~YY-~G~~-----~i~~-~~~~~~~~~~~~~~v~n~~~~iVd~~~~~l~~~g~~~~~~ 87 (486) T protein:vir:42 17 VREEMISAFEDASKDL--ASNTSYY-DAER-----RPEA-IGVTVPREMQQLLAHVGYPRLYVDSVAERQAVEGFRLGDA 87 (486) T ss_pred HHHHHHHHHHHHHHHH--HHHHHHh-cccC-----cchh-cccccchhHhhhhhccchHHHHHHHHHhhhcccceecCCC Confidence 1112222221111000 0000000 0000 0000 00000000 00011123334554444432233433221 Q ss_pred hh-----hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCce-------eEEEEeccccceeeecCCCceEEE Q lcl|Aclame:pro 78 KN-----QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGAD-------MKWEYLRPSQVNTYYFEYENGMYY 145 (392) Q Consensus 78 ~~-----~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~-------~~l~~l~~~~v~~~~~~~~~~~~~ 145 (392) +. ..++ .-| ........+..+++.+|.||+.+.++..|.. ..+.+++|..+.+..+...+.+.. T Consensus 88 ~~~~~~~~~i~-~~N---~~d~~~~~~~~~a~~~G~ay~~v~~~e~~~~~~~~~~~~~i~~~~p~~~~~i~d~~~~~~~~ 163 (486) T protein:vir:42 88 DEADEELWQWW-QAN---NLDIEAPLGYTDAYVHGRSFITISKPDPQLDLGWDQNVPIIRVEPPTRMHAEIDPRINRVSK 163 (486) T ss_pred chhHHHHHHHH-Hhc---ChhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCeeEEEEecccceEEEEeCCCCCeEE Confidence 11 1112 223 2334556788889999999999987654432 256788888888877643322211 Q ss_pred EEE--ecCC--cce-------------------------eeEEEecceEEEecCCCccccccCCCHHHH-HHHHHHHHHH Q lcl|Aclame:pro 146 NIT--FDDP--KIE-------------------------PILQAPQSDLIHMKLLSIDGGKTGISPLYS-LRRESKIQRA 195 (392) Q Consensus 146 ~~~--~~~~--~~~-------------------------~~~~~~~~~vih~~~~~~~~~~~G~s~l~~-~~~~i~~~~~ 195 (392) .+. .... ... ....+..-.|++++++...+...|.|-+.. +...++..+. T Consensus 164 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~~~n~~~~~~~~G~s~i~~~v~~liDa~~~ 243 (486) T protein:vir:42 164 AIRVAYDKEGNEIQAATLYTPMETIGWFRADGEWAEWFNVPHGLGVVPVVPLPNRTRLSDLYGTSEITPELRSMTDAAAR 243 (486) T ss_pred EEEEEEecCCCeEEEEEEEcCCcEEEEEecCCcEEeecceecCCCCceEEEeccccccCCCCCcccchhhHHHHHHHHHH Confidence 110 0000 000 011122234455554433344467775542 3333333333 Q ss_pred HHHHHHHHHHccCCcceEEee-CCCC-CchHHHHHHHHHHHhccccCCceeecc-CCceEEeccCChhhHHHHHHHHHHH Q lcl|Aclame:pro 196 SDRLTISSLNSSLNVPGVLTV-KGGG-LLSDKDKASRSRSFMKRSRSGGPVVLD-DLEEFTALEIKSNVAQLLSQTDWTS 272 (392) Q Consensus 196 ~~~~~~~~~~ng~~~~~i~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~~~vl~-~g~~~~~l~~~~~d~~~~e~~~~~~ 272 (392) +........+-.+.|..++.- +... ..++....... ....|++++++ ++.++.++..+..+ .+++..+..+ T Consensus 244 ~~s~~~~~~e~~a~p~~~i~G~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~q~~~~~~e-~~~~~l~~~i 317 (486) T protein:vir:42 244 ILMLMQATAELMGVPQRLIFGIKPEEIGVDSETGQTLF-----DAYLARILAFEDAEGKIQQFSAAELA-NFTNALDQIA 317 (486) T ss_pred HHHHHHHHHHhhcchHHHhhcCCccccccccccccchh-----hhhhchhcccCCCCceEEeecccCHH-HHHHHHHHHH Confidence 333333333333344433331 1111 11111111111 11234556664 46688777654333 3788888888 Q ss_pred HHHHHHhcccHHHcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------------hhccchhhh Q lcl|Aclame:pro 273 KQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISELEYKLSD-------------------HISVNMRPA 333 (392) Q Consensus 273 ~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p~l~~i~~~l~~~l~~-------------------~~~~d~~~~ 333 (392) .++|..=++|++.+|+...+.++..+.+..+. .+.-.+...+..|...|-+ .+++.+..- T Consensus 318 ~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~-~l~~ka~~~~~~f~~~l~~~~~l~~~~~~~~~~~~d~~~i~v~w~~~ 396 (486) T protein:vir:42 318 KQVAAYTGLPPQYLSTAADNPASAEAIRAAES-RLIKKVERKNLMFGGAWEEAMRIAYRIMKGGDVPPDMLRMETVWRDP 396 (486) T ss_pred HHHhcccCCCHHHhccccCchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeeEEecCC Confidence 99999999999999875443333333332211 1222222222222221110 111111111 Q ss_pred hhcChHHHHHHHHHHHhC--CccCHHHHHHHHHhCCCCCcccccc---------------cCCCCCCCCCC--------C Q lcl|Aclame:pro 334 IDPLGDNYLSTISTATRW--GALAENQATFVLQEAGYIPKDLPAP---------------ENTNKKTTGQS--------N 388 (392) Q Consensus 334 ~~~~~~~~~~~~~~~~~~--g~~t~nE~R~~l~~~g~~~~e~~~~---------------~~~~~~~~gd~--------~ 388 (392) ...+..+.+..+.+++++ |+++..-+++++ |+.+++..++ +.++....+.. + T Consensus 397 ~~~s~~~~ad~~~kl~~~~~g~~s~et~~~~l---g~~~d~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (486) T protein:vir:42 397 STPTYAAKADAATKLYGNGQGVIPRERARIDM---GYSVKEREEMRRWDEEEAAMGLGLLGTMVDADPTVPGSPSPTAPP 473 (486) T ss_pred CCCCHHHHHHHHHHHHhcccCCCCHHHHHhcC---CCChhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCC Confidence 223445566777777765 567766555543 5544322111 00111010000 1 Q ss_pred CCCC Q lcl|Aclame:pro 389 EPVP 392 (392) Q Consensus 389 ~p~p 392 (392) .+-| T Consensus 474 ~~~~ 477 (486) T protein:vir:42 474 KPQP 477 (486) T ss_pred CCCc Confidence 1111 No 152 >protein:vir:99088 Length: 629 # NCBI annotation: gp12 # Family: family:all:2798 # MgeID: mge:1608 # MgeName: Qyrzula # Cross-refs: genbank:acc:YP_655692;genbank:gi:109521770;genbank:GeneID:4157810 Probab=98.53 E-value=1.1e-07 Score=58.75 Aligned_cols=382 Identities=12% Similarity=0.073 Sum_probs=195.8 Q ss_pred Ccchhhhhhcccccccccccccccc-----cCcchhhhhhhccCC-CC-cccchhhhhc-chHHHHHHHHHHHhhhhCce Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYF-----PDGNDAQIMESLLGD-NN-EWVSARAALR-NSDLFSIILQLSSDLAIVKI 72 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~-~~~~~~~al~-~~~v~~~i~~ia~~ia~lp~ 72 (392) |.--=+...++....+......+.+ .+......+..+... .. .....-.++. .+.+...+..|++++|++.+ T Consensus 1 ma~~~lr~~rrpk~~p~~~r~~al~aas~~i~~p~~~~~ks~~~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~Sr~rL 80 (629) T protein:vir:99 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQDDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) T ss_pred CCccceeeeecCCCCChhhhhhhhhhhhhcccccchhhhhhcCCCchhhhhHHHHHHHHhhhhHHHHhhhhhhhhceeee Confidence 4444444444433222211111100 000011111111110 00 0111112222 57788899999999999998 Q ss_pred eeecchhh-----hhcccCCcc---------------CCHHHHHHHHHHHHHHhCCeeEEEecccCC------cee-EEE Q lcl|Aclame:pro 73 NAEKKKNQ-----GIIDNPSTN---------------ANKHGFWQSMFAQLLLGGEAFAYRWRNANG------ADM-KWE 125 (392) Q Consensus 73 ~~~~~~~~-----~~~~~PN~~---------------~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G------~~~-~l~ 125 (392) ..-+-+.+ .-.++|++. +...++++.+..+|.+-|++|+.+.....| .++ +++ T Consensus 81 ~as~idpDtg~ptg~i~e~~~~~~~v~~~v~~i~gG~lgqa~lLkr~~~~ltV~GE~wiv~~~~~~~~~d~~~~~~~eW~ 160 (629) T protein:vir:99 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) T ss_pred EeeeecCCCCCCccccCCCchhHHHHHHHHHhhcCChhhHHHHHHHHHhheecccceEEEEeecCCCccCCCCcchhhhe Confidence 77543311 112333333 467799999999999999999998733333 322 445 Q ss_pred EeccccceeeecCCCceEEEEEEecCCcceeeEEEecceEEEec--CCCccccccCCCHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 126 YLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMK--LLSIDGGKTGISPLYSLRRESKIQRASDRLTISS 203 (392) Q Consensus 126 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~~--~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~ 203 (392) .+-++.++-. .++.. . .. +.+.+....+..+++ +| .+.+....+--||+.++...+....-+.+...+. T Consensus 161 ~vt~~ei~~~---~~~~~-i--~l--P~g~~~e~~~~~d~l-~RiW~P~Prr~~e~DSpvra~l~~l~Ei~~lt~~i~aa 231 (629) T protein:vir:99 161 ALTPEEVRAS---EKKTI-I--EL--PTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANA 231 (629) T ss_pred eechHHhhhc---cCcee-E--Ec--CCCCccceeCCCceE-EEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHH Confidence 5555555422 22221 1 11 112233344444544 44 3334445677899999999998888887777776 Q ss_pred HHccCCcceEEeeCCCCCc------------------------hHHHHHHHH----HHHhccccCC--ceeecc------ Q lcl|Aclame:pro 204 LNSSLNVPGVLTVKGGGLL------------------------SDKDKASRS----RSFMKRSRSG--GPVVLD------ 247 (392) Q Consensus 204 ~~ng~~~~~i~~~~~~~~~------------------------~~~~~~~~~----~~~~~~~~~g--~~~vl~------ 247 (392) .+....-.|++.++...+- .++...-+. ..+...+.+. -++++. T Consensus 232 akSRL~gnGvlflP~e~slP~~~~p~~~n~pg~~~p~~~~~pa~~~l~~~l~q~a~tAi~De~S~aA~vPiia~~P~E~i 311 (629) T protein:vir:99 232 SKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELI 311 (629) T ss_pred HHHHHhhCceeEeccCcccCccCCCCCCCCCCcccccccccchHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechHHh Confidence 6666666677665432111 112222222 1222222222 233332 Q ss_pred CCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHc-CCcccccchH--HHHHHHHHHHHHHHHHHHHHHHHHHhhh Q lcl|Aclame:pro 248 DLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYI-GGQGDQQSSI--QQISGMYASALNRYLRPAISELEYKLSD 324 (392) Q Consensus 248 ~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~l-g~~~~~~~~~--~~~~~~~~~~l~p~l~~i~~~l~~~l~~ 324 (392) ++++.-.+.....+. -+.+++..++++|...-|||+.| |..++.+-+. +=...-++..|+|.+..|+++|++.+++ T Consensus 312 ~~i~hlkf~~ei~e~-aiktR~daI~RlA~glDippE~LLGlGsd~NHWsAWqI~dedvrlHI~P~l~~ic~AlT~~~Lr 390 (629) T protein:vir:99 312 KNVTHLKFDNQVTEV-AIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLR 390 (629) T ss_pred cCeeEEeecCchhHH-HHhhHHHHHHHHHhccCCchhhheeccCCccceEEEEecccceeeecchhHHHHHHHHHhhHHH Confidence 334444444443333 48999999999999999999966 4433443222 1123345678999999999999988764 Q ss_pred h----hccchhhhh---hcC----hHHHHHHHHHHHhCCccCHHHHHHHHHhC---CCC--Ccc------------cccc Q lcl|Aclame:pro 325 H----ISVNMRPAI---DPL----GDNYLSTISTATRWGALAENQATFVLQEA---GYI--PKD------------LPAP 376 (392) Q Consensus 325 ~----~~~d~~~~~---~~~----~~~~~~~~~~~~~~g~~t~nE~R~~l~~~---g~~--~~e------------~~~~ 376 (392) . .++|..... +.+ .-.+...+..++..|.+|-.+.|+.++.. |+. ..| .|.+ T Consensus 391 p~Le~eGiDp~kYvvW~DaS~Lt~dPd~~deA~~a~drGAIt~eAlrk~lGf~eD~~yd~tt~E~~~~~a~d~V~~~P~L 470 (629) T protein:vir:99 391 TVLMREGIDPNAYVVWHDASQLTVDPDKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNL 470 (629) T ss_pred HHHHHhCCCHHHhEeeecCcccccCCCCcHHHHHHHHcCCccHHHHHHHhcCccccccCCCchHHHHHHHHHhhhhCcch Confidence 2 344433221 111 01233456677889999999999887532 231 111 0111 Q ss_pred ------------c--------CCCCC--CCCC-C-------CCCCC Q lcl|Aclame:pro 377 ------------E--------NTNKK--TTGQ-S-------NEPVP 392 (392) Q Consensus 377 ------------~--------~~~~~--~~gd-~-------~~p~p 392 (392) + .++|. ++|+ + ++|.+ T Consensus 471 i~~~a~l~~~~a~~~~P~~~~~~pp~~e~~~~dE~sga~~~~ep~t 516 (629) T protein:vir:99 471 LPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDT 516 (629) T ss_pred hhhhhhhhhhhcccccCccCCCCCccccCCCcccccCCCcCCCCCC Confidence 0 01111 0111 0 00111 No 153 >protein:vir:102426 Length: 631 # NCBI annotation: gp11 # Family: family:all:2798 # MgeID: mge:1618 # MgeName: Pipefish # Cross-refs: genbank:acc:YP_655288;genbank:gi:109521851;genbank:GeneID:4157741 Probab=98.51 E-value=4.5e-08 Score=60.89 Aligned_cols=385 Identities=11% Similarity=0.056 Sum_probs=197.1 Q ss_pred Ccchh-hhhhccccccc--cccc---ccccccCcchhhhhhhccCCC-Ccccchhhhh-cchHHHHHHHHHHHhhhhCce Q lcl|Aclame:pro 1 MILPI-LNFINQTNDPP--EAGS---VQSYFPDGNDAQIMESLLGDN-NEWVSARAAL-RNSDLFSIILQLSSDLAIVKI 72 (392) Q Consensus 1 m~Mg~-~n~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~al-~~~~v~~~i~~ia~~ia~lp~ 72 (392) |.--- +...++.+... .+.+ .+...++.....-+.++.+.. ......-.++ ..+.+.-.+..|++++|++.+ T Consensus 1 ~~a~~~lr~~rrpkg~~~a~~r~L~aAs~~~~dpg~~~~~~~g~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~sr~rL 80 (631) T protein:vir:10 1 MAATQSLRLVRRPKGGRPAPSRALTAASQPLPDPSQVFSKSTGISRNSDWQTDAWEAVDLVGELRYYVGWRASSCSRCRL 80 (631) T ss_pred CCcccceeeeecCCCCCccchhhhhhhhccccchhhhhhhhcCCcccchhhHHHHHHHHhhhhHHHHhhhhhhhhceeee Confidence 22111 11222222111 0001 111111111111111111111 0011111222 247788899999999999988 Q ss_pred eeecchhh----------------h----hcccCCccCCHHHHHHHHHHHHHHhCCeeEEEe-cccCC---------c-e Q lcl|Aclame:pro 73 NAEKKKNQ----------------G----IIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRW-RNANG---------A-D 121 (392) Q Consensus 73 ~~~~~~~~----------------~----~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~-r~~~G---------~-~ 121 (392) ..-+-+.+ . ...-+--.+...++++.+..++.+-|++|+.+. |..+| + . T Consensus 81 ~as~idpDtg~ptg~iee~~~~~~~v~~~~~~i~gG~lgQ~~llkrl~~~ltV~GE~wiv~l~~p~~~~~~~pd~~~r~~ 160 (631) T protein:vir:10 81 VASELDENTGLPTGGISEDNTEGERVREIVSKIADGTLGQAALTKRVVECLTVPGELWIVILTRPVKGAPAQPDGSVRTR 160 (631) T ss_pred EeeeeccCCCCCccccccCCchhHHHHHHHHhcCCCcchHHHHHHHHHhheecccceEEEEEeccCcCCCCCcccccccc Confidence 76542211 0 122466678899999999999999999999874 33322 1 2 Q ss_pred eEEEEeccccceeeecCCCceEEEEEEecCCcceeeEEEecce-EEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 122 MKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQAPQSD-LIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLT 200 (392) Q Consensus 122 ~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~ 200 (392) -+++++....++.....++..+ ... .+. +.......+ ++.+=.+.+....+--||+.++...+....-+.+.. T Consensus 161 ~~W~~vt~~ei~~~~~g~g~~v--~lp-~g~---~h~~~~~~D~l~RiW~P~prr~~e~dSpvra~l~~l~Ei~~~t~~i 234 (631) T protein:vir:10 161 QEWYAVSKEEIKKSNKGSGTNI--VLP-TGE---EHEFVKGTDIIFRVWIPKPRKASEPDSPVRAVLDSIREIVRTTKTI 234 (631) T ss_pred cceeeccHHHHhcccCccccee--ecC-CCC---ccceecCCceEEEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHH Confidence 3566677666654433322111 111 111 112222223 333333444455678899999999999888888888 Q ss_pred HHHHHccCCcceEEeeCCCCCc-----------------------hHHHHHHHH----HHHhccccCC--ceeecc---- Q lcl|Aclame:pro 201 ISSLNSSLNVPGVLTVKGGGLL-----------------------SDKDKASRS----RSFMKRSRSG--GPVVLD---- 247 (392) Q Consensus 201 ~~~~~ng~~~~~i~~~~~~~~~-----------------------~~~~~~~~~----~~~~~~~~~g--~~~vl~---- 247 (392) .+..+....-.|++.++...+- .++....+. ..+...+.+. -++++. T Consensus 235 ~aaakSRl~gnGvlflP~els~P~~~~~~~~~~g~~v~~~~g~pa~~~l~~~l~q~a~tai~De~S~aA~vPii~~~p~E 314 (631) T protein:vir:10 235 ANASKSRLIGNGVLFVPHEMSLPAAQGPVSEVEGEEIAPLVGEPAVQQLTDMLFQVAETAVEDEDSQAAFIPVIAGVPGE 314 (631) T ss_pred HHHHHHHHhhCceeEeccccccCCCCCCCCCcCCccCCccccchhHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechH Confidence 7777777777788877653221 112222222 1222222222 233332 Q ss_pred --CCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHc-CCcccccchH--HHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 248 --DLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYI-GGQGDQQSSI--QQISGMYASALNRYLRPAISELEYKL 322 (392) Q Consensus 248 --~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~l-g~~~~~~~~~--~~~~~~~~~~l~p~l~~i~~~l~~~l 322 (392) ++++.-.+.....+. -+.+++..++++|...-|||+.| |..++.+-+. +=...-++..|+|.+..|+++|++.+ T Consensus 315 ~i~~i~hlkf~~ei~e~-aiktR~daI~RlA~glDi~pE~LLGlGsd~NHWsAWqI~dedVrlHI~P~l~lic~AlT~q~ 393 (631) T protein:vir:10 315 QIKDVKHIRFDNEITEV-AIKTRNDAIARLAMGLDVSPERLLGLGSQTNHWSAWQISDEDVQLHIAPVMEIFCQALTDQI 393 (631) T ss_pred HhcCeeEEeecCchhHH-HHhhHHHHHHHHHhccCCchhhheeccCCccceEEEEecccceeeecchHHHHHHHHHHhhH Confidence 334444444433333 48999999999999999999966 4433443222 11233456789999999999999887 Q ss_pred hhh----hccchhhhh---hcCh----HHHHHHHHHHHhCCccCHHHHHHHHHhC---CCCCcc--------------cc Q lcl|Aclame:pro 323 SDH----ISVNMRPAI---DPLG----DNYLSTISTATRWGALAENQATFVLQEA---GYIPKD--------------LP 374 (392) Q Consensus 323 ~~~----~~~d~~~~~---~~~~----~~~~~~~~~~~~~g~~t~nE~R~~l~~~---g~~~~e--------------~~ 374 (392) ++. .++|..... +.+. -.+...+..+...|.+|-.+.|+.++.. |+.-.+ +| T Consensus 394 Lrp~Le~eGvDp~kYvvW~DaS~Lt~dPdr~deA~qa~drGAIt~eAlrk~lGf~eDd~yd~~t~e~~~~~a~~av~~dp 473 (631) T protein:vir:10 394 LRVTLAREGIDPSKYVVWYDPSQLTIDPDKSDEAKFAYENGAINGEALRKYLGLGDDAGYDFTTREGWVMWAQDAVSKDP 473 (631) T ss_pred HHHHHHHhCCCHHHhEeeecCcccccCCCCcHHHHHHHHcCCcCHHHHHHHhcCchhcccCcCchHHHHHHHHHHhhccc Confidence 642 344433221 1111 1234556678889999999999987431 222000 00 Q ss_pred ccc--------------CCC----CCCCCCCC----CCCC Q lcl|Aclame:pro 375 APE--------------NTN----KKTTGQSN----EPVP 392 (392) Q Consensus 375 ~~~--------------~~~----~~~~gd~~----~p~p 392 (392) ++. ..| +.++|+++ +|.+ T Consensus 474 aLip~lApl~~~~~~~v~~P~~~a~~~~g~ed~~~~~~~~ 513 (631) T protein:vir:10 474 TLIPMLAPLIAGVLKQIEFPQQQAIDSGGNEDTSDADDLD 513 (631) T ss_pred CcchhhHHHHHHHhhhccCCCCCCCCCCCCCccccccccc Confidence 000 000 01111111 1222 No 154 >protein:vir:106491 Length: 646 # NCBI annotation: Pas4 # Family: family:all:2798 # MgeID: mge:1680 # MgeName: phiAsp2 # Cross-refs: genbank:acc:YP_024790;genbank:gi:48697405;genbank:GeneID:2846148 Probab=98.50 E-value=3.8e-07 Score=55.76 Aligned_cols=378 Identities=13% Similarity=0.096 Sum_probs=194.7 Q ss_pred chhhhhhccccccccccccc----------ccccCcchhhhhhh-ccCCCCcccchhhhhc-chHHHHHHHHHHHhhhhC Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQ----------SYFPDGNDAQIMES-LLGDNNEWVSARAALR-NSDLFSIILQLSSDLAIV 70 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~al~-~~~v~~~i~~ia~~ia~l 70 (392) |.++ +-+..++.....+ +.-.......++.. .++........-.++. .|.+...+..|++++|++ T Consensus 1 ~~~~---rPk~~p~~p~~~~~arrr~LtaAsa~l~~~~~~~~kt~~~~~~~WQ~eAW~~~d~vpELry~vgW~~~a~SR~ 77 (646) T protein:vir:10 1 MALL---KPKSAPPEPFGAEVARRIALAGATAQVDLGASSSWKTWKFGNKDWQTEGWRLYDIIPEHHFLAGRIGDSVAQA 77 (646) T ss_pred Cccc---CCCCCCCCcccccccchhhhhhccccccCCCcceeecCCCcchhhhHHHHHHHhhhhhHhhHhhhhhhhhcee Confidence 5553 3332222111000 00000000001111 1111111111112222 477888999999999999 Q ss_pred ceeeecchhhhh-------------cccC-CccCCHHHHHHHHHHHHHHhCCeeEEEe---cccCCceeEEEEeccccce Q lcl|Aclame:pro 71 KINAEKKKNQGI-------------IDNP-STNANKHGFWQSMFAQLLLGGEAFAYRW---RNANGADMKWEYLRPSQVN 133 (392) Q Consensus 71 p~~~~~~~~~~~-------------~~~P-N~~~t~~~f~~~~~~~l~l~G~a~~~i~---r~~~G~~~~l~~l~~~~v~ 133 (392) .+..-+-+..+. -..+ -.-.-..++++.+..++.+-|++|++.. ....+---.++++-...|. T Consensus 78 rL~aseiddtG~~tg~v~~~~v~~iv~~~~Gg~~gQ~qlLkr~~~~ltV~GE~wiv~~~~~~~~~~~~~~W~vvt~~Ev~ 157 (646) T protein:vir:10 78 RLYVTEVDDTGEETGEVQDERIKRLAAVPLGTGSQRDDNLRLAGLDLAVGGECWIVGEGAATSPEAAEGSWFVVTGSAIS 157 (646) T ss_pred eeeeeeecCCCCCcCccchHHHHHHhhhhccchhhHHHHHHHHHhheecccceEEeeccccCCCCCCccceeeecHHHhc Confidence 987765433221 1111 1223556889999999999999999752 1111222346677766663 Q ss_pred eeecCCCceEEEEEEecCCcceeeEEEecceEEEecC--CCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcc Q lcl|Aclame:pro 134 TYYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKL--LSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVP 211 (392) Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~--~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~ 211 (392) .. ++.+-.. ......+.+.+.++..+++. |- +.+.....--||+.++...+....-+.+...+..+....-. T Consensus 158 ~t----g~~~~i~-~p~~~~g~~~v~~~~~d~lv-RiW~P~Prr~~epDSpvra~l~~l~Ei~~lt~~I~aaakSRL~Gn 231 (646) T protein:vir:10 158 RT----GDEIAVR-RPQQRGGSKLVLVDGQDILI-RCWRPHPNDTDQADSFTRSAIVPLREIELLTKREFAELDSRLTGA 231 (646) T ss_pred cC----CCeeeee-cCccCCCCCcceecCCceEE-EEecCCcccccCCcchhHHHHHHHHHHHHhhhHhHHHHHHHHhcC Confidence 32 2211111 11111133445555556543 43 33444567789999999999988888888888877777778 Q ss_pred eEEeeCCCCC------c---hHHHHHHHHHH----HhccccCC--ceeeccC-Cc------eEEeccCCh-hhHHHHHHH Q lcl|Aclame:pro 212 GVLTVKGGGL------L---SDKDKASRSRS----FMKRSRSG--GPVVLDD-LE------EFTALEIKS-NVAQLLSQT 268 (392) Q Consensus 212 ~i~~~~~~~~------~---~~~~~~~~~~~----~~~~~~~g--~~~vl~~-g~------~~~~l~~~~-~d~~~~e~~ 268 (392) |++.++...+ . .+.....+.+. +...+.+. -++++.. |. +++.+++.. -+.--+.++ T Consensus 232 GvLfvP~e~s~p~~~~~~a~~~~l~~~l~qaa~tAi~De~S~aA~vPiia~~P~E~i~~~~~ik~l~f~~eite~aiktR 311 (646) T protein:vir:10 232 GIMFLPEGVDFPRGEEDPAGLAGFMAYLQRAAAASMADQSRASAMVPIMATIPNEMMEHLDKIKPLTFWSELSAEITPMK 311 (646) T ss_pred ceeeeccccccCCCCCCCcchhHHHHHHHHHHHhhhcCCCCccceeeeEEeeChHHHhhhhcceeeccCchhhHHHhhhH Confidence 8888765322 1 12333333222 22222222 2334322 11 344444432 223358899 Q ss_pred HHHHHHHHHHhcccHHHcCCcccccchHH-H-HHHHHHHHHHHHHHHHHHHHHHHhhhh----hcc----------chhh Q lcl|Aclame:pro 269 DWTSKQYAKVYGLPDSYIGGQGDQQSSIQ-Q-ISGMYASALNRYLRPAISELEYKLSDH----ISV----------NMRP 332 (392) Q Consensus 269 ~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~-~-~~~~~~~~l~p~l~~i~~~l~~~l~~~----~~~----------d~~~ 332 (392) +..++++|...-|||+.|=+.++.+-+.. + ...-++ .|+|.+..|+++|++.+++. .++ |... T Consensus 312 ~daI~RlA~glDIppE~LLGlgd~NHWtAWqI~de~vr-HI~P~l~~ic~AlT~~~Lrp~Le~eGi~dp~kyvvW~DaS~ 390 (646) T protein:vir:10 312 DKAIARLASSAEIPGEVLTGIGDANHWTAWLISDEGIR-WIRGYLGLIADALTRGFLRRALESMGVTNPERYAFAFDTST 390 (646) T ss_pred HHHHHHHHhccCCchhheeeccccceeeeeeeccccch-hhhhHHHHHHHHHHhhHHHHHHHHcCCCChhHeEEeecCcc Confidence 99999999999999997744444432221 1 122334 69999999999999887642 233 2222 Q ss_pred hhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhC---CCCCcc------------------ccccc-----------CCC Q lcl|Aclame:pro 333 AIDPLGDNYLSTISTATRWGALAENQATFVLQEA---GYIPKD------------------LPAPE-----------NTN 380 (392) Q Consensus 333 ~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~---g~~~~e------------------~~~~~-----------~~~ 380 (392) +.. + -.+...+..+...|.+|-.+.|+.++.. ++.+.| +|.+. .++ T Consensus 391 Lt~-~-pd~~deA~qa~drGAIt~eAlrk~~Gf~~dd~pt~~E~~~~~~~~~v~~~P~Lil~P~~qa~~~~P~~~~~~lp 468 (646) T protein:vir:10 391 LAS-K-PNRLDEAIQLHERNLIKDEEVVKAGAFSVDQMPTVQERAVQILLGLVKTQPDLILDPAIQAALGLPAVQSVGLP 468 (646) T ss_pred ccc-C-CCCcHHHHHHHHcCCccHHHHHHHhcccccccCChHHHHHHHHHHHhcCCccccccchhhccccCCCcCccccC Confidence 211 1 1233556677889999999999876421 111100 01110 122 Q ss_pred C--CCCCCCCCCCC Q lcl|Aclame:pro 381 K--KTTGQSNEPVP 392 (392) Q Consensus 381 ~--~~~gd~~~p~p 392 (392) | ++.++.++-.| T Consensus 469 p~~~~~~dg~~~~~ 482 (646) T protein:vir:10 469 PTAAQRTDGDLDDD 482 (646) T ss_pred CcccccccCCCCCh Confidence 2 22222211111 No 155 >protein:vir:8654 Length: 629 # NCBI annotation: gp12 # Family: family:all:2798 # MgeID: mge:156 # MgeName: Rosebush # Cross-refs: genbank:acc:NP_817773;genbank:gi:29566205;genbank:GeneID:1259465 Probab=98.49 E-value=1.2e-07 Score=58.48 Aligned_cols=382 Identities=12% Similarity=0.069 Sum_probs=198.8 Q ss_pred Ccchhhhhhcccccccccccccccc-----cCcchhhhhhhccCC-CC-cccchhhhhc-chHHHHHHHHHHHhhhhCce Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYF-----PDGNDAQIMESLLGD-NN-EWVSARAALR-NSDLFSIILQLSSDLAIVKI 72 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~-~~~~~~~al~-~~~v~~~i~~ia~~ia~lp~ 72 (392) |.--=+...++....+......+.+ .+......+..+... .. .....-.++. .+.+...+..|++++|++.+ T Consensus 1 ma~~~lr~~rrpk~~p~~~r~~al~aas~~i~~p~~~~~ks~~~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~Sr~rL 80 (629) T protein:vir:86 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) T ss_pred CCccceeeeecCCCCChhhhhhhhhhhhhccccccchhhhhcCCCchhhhhHHHHHHHHhhhhHHHHhhhhhhhhceeee Confidence 4444444444433222211111100 000001111111110 00 0111112222 57788899999999999998 Q ss_pred eeecchhh-----hhcccCCcc---------------CCHHHHHHHHHHHHHHhCCeeEEEecccCC------cee-EEE Q lcl|Aclame:pro 73 NAEKKKNQ-----GIIDNPSTN---------------ANKHGFWQSMFAQLLLGGEAFAYRWRNANG------ADM-KWE 125 (392) Q Consensus 73 ~~~~~~~~-----~~~~~PN~~---------------~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G------~~~-~l~ 125 (392) ..-+-+.+ .-.++|++. +...++++.+..+|.+-|++|+.+.....| .++ +++ T Consensus 81 ~as~idpDtg~ptg~i~e~~~~~~~v~~~v~~i~gG~lgqa~lLkr~~~~ltV~GE~wiv~~~~~~~~~d~~~~~~~eW~ 160 (629) T protein:vir:86 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) T ss_pred EeeeecCCCCCCccccCCCchhHHHHHHHHHhhcCChhhHHHHHHHHHhheecccceEEEEeecCCCccCCCCcchhhhe Confidence 77543311 112333333 467799999999999999999998733333 322 445 Q ss_pred EeccccceeeecCCCceEEEEEEecCCcceeeEEEecceEEEecC--CCccccccCCCHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 126 YLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKL--LSIDGGKTGISPLYSLRRESKIQRASDRLTISS 203 (392) Q Consensus 126 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~--~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~ 203 (392) .+-++.++-. .++.. . .. +.+.+....+..+++ +|- +.+....+--||+.++...+....-+.+...+. T Consensus 161 ~vt~~ei~~~---~~~~~-i--~l--P~g~~~e~~~~~d~l-~RiW~P~Prr~~e~DSpvra~l~~l~Ei~~lt~~i~aa 231 (629) T protein:vir:86 161 ALTPEEVRAS---EKKTI-I--EL--PTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANA 231 (629) T ss_pred eechHHhhhc---cCcee-e--Ec--CCCCcceeeCCCceE-EEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHH Confidence 5555555422 22221 1 11 112333444555554 443 334445677899999999998888887777776 Q ss_pred HHccCCcceEEeeCCCCCc------------------------hHHHHHHHH----HHHhccccCC--ceeecc------ Q lcl|Aclame:pro 204 LNSSLNVPGVLTVKGGGLL------------------------SDKDKASRS----RSFMKRSRSG--GPVVLD------ 247 (392) Q Consensus 204 ~~ng~~~~~i~~~~~~~~~------------------------~~~~~~~~~----~~~~~~~~~g--~~~vl~------ 247 (392) .+....-.|++.++...+- .++...-+. ..+...+.+. -++++. T Consensus 232 akSRL~gnGvlflP~e~slP~~~~p~~~n~pg~~~p~~~~~pa~~~l~~~l~q~a~tAi~De~S~aA~vPiia~~P~E~i 311 (629) T protein:vir:86 232 SKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELI 311 (629) T ss_pred HHHHHhhCceeeeccCcccCccCCCCCCCCCCcccccccccchHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechHHh Confidence 6666666677665432111 112222222 1222222222 233332 Q ss_pred CCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHc-CCcccccchH--HHHHHHHHHHHHHHHHHHHHHHHHHhhh Q lcl|Aclame:pro 248 DLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYI-GGQGDQQSSI--QQISGMYASALNRYLRPAISELEYKLSD 324 (392) Q Consensus 248 ~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~l-g~~~~~~~~~--~~~~~~~~~~l~p~l~~i~~~l~~~l~~ 324 (392) ++++.-.+.....+. -+.+++..++++|...-|||+.| |..++.+-+. +=...-++..|+|.+..|+++|++.+++ T Consensus 312 ~~i~hlkf~~ei~e~-aiktR~daI~RlA~glDippE~LLGlGsd~NHWsAWqI~dedvrlHI~P~l~~ic~AlT~~~Lr 390 (629) T protein:vir:86 312 KNVTHLKFDNQVTEV-AIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLR 390 (629) T ss_pred cCeeEEeecCchhHH-HHhhHHHHHHHHHhccCCchhhheeccCCccceEEEEecccceeeecchHHHHHHHHHHhhHHH Confidence 334444444443333 48999999999999999999966 4433443222 1123345678999999999999988764 Q ss_pred h----hccchhhhh---hcC----hHHHHHHHHHHHhCCccCHHHHHHHHHhC---CCC--Ccc------------cccc Q lcl|Aclame:pro 325 H----ISVNMRPAI---DPL----GDNYLSTISTATRWGALAENQATFVLQEA---GYI--PKD------------LPAP 376 (392) Q Consensus 325 ~----~~~d~~~~~---~~~----~~~~~~~~~~~~~~g~~t~nE~R~~l~~~---g~~--~~e------------~~~~ 376 (392) . .++|..... +.+ .-.+...+..++..|.+|-...|+.|+.. |+. ..| .|.+ T Consensus 391 p~Le~eGiDp~kYvvW~DaS~Lt~dPd~~deA~~a~drGAIt~eAlrk~lGf~eD~~yd~tt~E~~~~~a~d~V~~~P~L 470 (629) T protein:vir:86 391 TVLMREGIDPNAYVVWHDASQLTVDPDKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNL 470 (629) T ss_pred HHHHHhCCCHHHhEeeecCcccccCCCCcHHHHHHHHcCCcCHHHHHHHhcCccccccCCCchHHHHHHHHHhhhhCcch Confidence 2 344433221 111 11234556678889999999999987432 231 111 0111 Q ss_pred -cCCCCC--CCCCCCCCCC Q lcl|Aclame:pro 377 -ENTNKK--TTGQSNEPVP 392 (392) Q Consensus 377 -~~~~~~--~~gd~~~p~p 392 (392) ..+.+. .-++-..|+| T Consensus 471 i~~~a~l~~~~a~~~~P~~ 489 (629) T protein:vir:86 471 LPTLAVLIPELADVEFPTP 489 (629) T ss_pred hhhhhhhhhhhcccccCcc Confidence 001111 1123333444 No 156 >protein:vir:2341 Length: 488 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075278;genbank:gi:12657865;genbank:GeneID:920078 Probab=98.48 E-value=4.8e-07 Score=55.22 Aligned_cols=372 Identities=10% Similarity=0.037 Sum_probs=149.0 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhh---hhcchHHHHHHHHHHHhhhhCceeeec- Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARA---ALRNSDLFSIILQLSSDLAIVKINAEK- 76 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---al~~~~v~~~i~~ia~~ia~lp~~~~~- 76 (392) ++=.+.+.+......- .....++ .+.. .+ . ..+..+..+. -+.......+|+.++..+---.+.+-. T Consensus 12 ~i~~L~~~~~~~~~r~--~~~~~Yy-~g~~-~i-~----~~~~~~~~~~~~~~~~~n~~~~ivd~~a~~l~~~Gf~~~~~ 82 (488) T protein:vir:23 12 LRDQLLDAFENKQNEL--KSSKAYY-DAER-RP-D----AIGLAVPLDMRKYLAHVGYPRTYVDAIAERQELEGFRIPSA 82 (488) T ss_pred HHHHHHHHHHHHHHHH--HHHHHHH-hccc-ch-h----hcCcccchhhhhhhhhcchHHHHHHHHHHhhhccceeccCC Confidence 2222222221111000 0000000 0000 00 0 0000111110 011122233444444322111222211 Q ss_pred ----------chhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEeccc--------CCceeEEEEeccccceeeecC Q lcl|Aclame:pro 77 ----------KKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNA--------NGADMKWEYLRPSQVNTYYFE 138 (392) Q Consensus 77 ----------~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~--------~G~~~~l~~l~~~~v~~~~~~ 138 (392) .+....+.+--..-........+..+++.+|.||+++.+.. .|.+ .+.+++|..+.+..+. T Consensus 83 ~~~~~~~~~d~~~~~~l~~i~~~N~~~~~~~~~~~~a~i~G~a~~~v~~~~~~~~~~~~~~~~-~i~~~~p~~~~~~~d~ 161 (488) T protein:vir:23 83 NGEEPESGGENDPASELWDWWQANNLDIEATLGHTDALIYGTAYITISMPDPEVDFDVDPEVP-LIRVEPPTALYAEVDP 161 (488) T ss_pred cccccccccchhHHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccccCCCCCcc-eEEEeccceeEEEEec Confidence 11111111111111345566778888999999999876532 2333 3667788887777664 Q ss_pred CCceEEEEE-Ee---cCCccee-------------------------eEEEecceEEEecCCCccccccCCCHHHH-HHH Q lcl|Aclame:pro 139 YENGMYYNI-TF---DDPKIEP-------------------------ILQAPQSDLIHMKLLSIDGGKTGISPLYS-LRR 188 (392) Q Consensus 139 ~~~~~~~~~-~~---~~~~~~~-------------------------~~~~~~~~vih~~~~~~~~~~~G~s~l~~-~~~ 188 (392) ..+.+...+ .+ ++..... ...+..-.|++++++...+...|.|-+.- +.. T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~~~~~G~s~i~~~v~~ 241 (488) T protein:vir:23 162 RTRKVLYAIRAIYGADGNEIVSATLYLPDTTMTWLRAEGEWEAPTSTPHGLEMVPVIPISNRTRLSDLYGTSEISPELRS 241 (488) T ss_pred CCCceEEEEEEEEecCCCcEEEEEEEecCcEEEEEecCCceEeccccccCCCCcceEEeccccccCCcCCccchhhhHHH Confidence 332222111 00 0000000 11122233455655443344567776542 233 Q ss_pred HHHHHHHHHHHHHHHHHccCCcceEEe-eCCC-CCchHHHHHHHHHHHhccccCCceeeccCC--ceEEeccCChhhHHH Q lcl|Aclame:pro 189 ESKIQRASDRLTISSLNSSLNVPGVLT-VKGG-GLLSDKDKASRSRSFMKRSRSGGPVVLDDL--EEFTALEIKSNVAQL 264 (392) Q Consensus 189 ~i~~~~~~~~~~~~~~~ng~~~~~i~~-~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g--~~~~~l~~~~~d~~~ 264 (392) .++....+........+-.+.|..++. .... ....+.......+. ..++++.+++| .++.++..+..+ .+ T Consensus 242 l~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~g~~~~~~q~~~~~~~-~~ 315 (488) T protein:vir:23 242 VTDAAAQILMNMQGTANLMAIPQRLIFGAKPEELGINAETGQRMFDA-----YMARILAFEGGEGAHAEQFSAAELR-NF 315 (488) T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhCCCcccccccccccchhhhh-----hhhhhccCCCCCCceeEecCCCChH-HH Confidence 333333332222222222223333332 1110 01111111111111 12346666655 567776654332 37 Q ss_pred HHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------------h Q lcl|Aclame:pro 265 LSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISELEYKLSD-------------------H 325 (392) Q Consensus 265 ~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p~l~~i~~~l~~~l~~-------------------~ 325 (392) ++..+..+.+|+..-++|++.+|+...+.++..+++..+. .+.--+...+..+...|-. . T Consensus 316 ~~~l~~~i~~~~~~~~~p~~~~g~~~~n~~Sg~Al~~~~~-~l~~k~~~~~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~ 394 (488) T protein:vir:23 316 VDALDALDRKAASYSGLPPQYLSSSSDNPASAEAIKAAES-RLVKKVERKNKIFGGAWEQAMRLAYKMVKGGDIPTEYYR 394 (488) T ss_pred HHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcc Confidence 8888888999999999999999876543334433332222 1222222222222222210 0 Q ss_pred hccchhhhhhcChHHHHHHHHHHHhCC--ccCHHHHHHHHHhCCCCCcccccc-------------------------cC Q lcl|Aclame:pro 326 ISVNMRPAIDPLGDNYLSTISTATRWG--ALAENQATFVLQEAGYIPKDLPAP-------------------------EN 378 (392) Q Consensus 326 ~~~d~~~~~~~~~~~~~~~~~~~~~~g--~~t~nE~R~~l~~~g~~~~e~~~~-------------------------~~ 378 (392) +++.+..-.-.+..+.+..+.+++++| +++..-+++++ |+.+++..++ +. T Consensus 395 i~v~f~~~~~~s~~~~ada~~kl~~~g~~~~s~et~~~~l---~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (488) T protein:vir:23 395 METVWRDPSTPTYAAKADAAAKLFANGAGLIPRERGWVDM---GYTIVEREQMRQWLEQDQKQGLGLIGSLYGASTPEGK 471 (488) T ss_pred ceEEecCCCCCCHHHHHHHHHHHHhcccccCCHHHHHHhC---CCCchHHHHHHHHHHHHHHHHHHHHHHHhccCCCccc Confidence 111111111224445666777777765 67776666554 5544322111 11 Q ss_pred CCCCCCCCCCCCCC Q lcl|Aclame:pro 379 TNKKTTGQSNEPVP 392 (392) Q Consensus 379 ~~~~~~gd~~~p~p 392 (392) .+..+.|+...|.| T Consensus 472 ~~~~~~~~~~~~e~ 485 (488) T protein:vir:23 472 PGEAPVGEPPAPEP 485 (488) T ss_pred CCCCCCCCCCCCCC Confidence 12233444444555 No 157 >protein:vir:80959 Length: 499 # NCBI annotation: gp3 # Family: family:all:898 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468389;genbank:gi:157324963;genbank:GeneID:5601394 Probab=98.38 E-value=9.2e-07 Score=53.67 Aligned_cols=380 Identities=12% Similarity=-0.005 Sum_probs=173.2 Q ss_pred Ccchhhhhhcccccc------cccc--cccccccCcchhhhhh---hccCCCC-----------cccchhhhhcchHHHH Q lcl|Aclame:pro 1 MILPILNFINQTNDP------PEAG--SVQSYFPDGNDAQIME---SLLGDNN-----------EWVSARAALRNSDLFS 58 (392) Q Consensus 1 m~Mg~~n~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~---~~~~~~~-----------~~~~~~~al~~~~v~~ 58 (392) |.=||+++++..... .+.. ...-..+......+.. +..+... ... .+..+...-... T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~-~~~~~s~n~~~~ 79 (499) T protein:vir:80 1 MINQIIAGVKGVMRRMGLLKSLKDVTDHKKVNANDEDYKYIDMWKRLYQGNYAEWHNLNYEHNGNPV-NRRQLSMNLPKV 79 (499) T ss_pred ChhHHHHHHHHHHHHhccccchhhhhcCCCCcCCHHHHHHHHHHHHHhcCCcchhhccccccCCCcc-ccceeecchHHH Confidence 888887765543221 0000 0000011111111111 1111100 000 011223344455 Q ss_pred HHHHHHHhhhhCceeee--cchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeee Q lcl|Aclame:pro 59 IILQLSSDLAIVKINAE--KKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYY 136 (392) Q Consensus 59 ~i~~ia~~ia~lp~~~~--~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~ 136 (392) .++..|+-+-.=|..+. +......+.+=...-....-.+.++......|.+|+.+..+.+|++. +..++|.++-+.. T Consensus 80 iv~~~a~~l~~ep~~i~~~d~~~~e~l~~~~~~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~~-i~~v~a~~~~Pi~ 158 (499) T protein:vir:80 80 TAKYMSKLLFNEKVKINIDDETAEEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHDGNKNVK-VSFATADCMYPLS 158 (499) T ss_pred HHHHHHHhhhCCcceEeeCCHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCcEEEEEEECCCCcEE-EEEEcCCceEEEE Confidence 66777776655555433 22222222221212223444455666677899999999988888654 6777887776643 Q ss_pred cCCCceE---EEE------------------------EEe--------cCCcceeeEE----------------EecceE Q lcl|Aclame:pro 137 FEYENGM---YYN------------------------ITF--------DDPKIEPILQ----------------APQSDL 165 (392) Q Consensus 137 ~~~~~~~---~~~------------------------~~~--------~~~~~~~~~~----------------~~~~~v 165 (392) .+.+... +.. +++ .....|..+. +..-.+ T Consensus 159 ~d~~~~~~~~f~~~~~~~~~~y~~lE~h~~~~~~~~~y~I~n~~~~~~~~~~lG~~v~l~~~~~~~~~~~~~~~~~~p~f 238 (499) T protein:vir:80 159 NDSENVDECLIANSFHKNNKYYKLLEWNEWKGEKEEVYTVTTELYQSDDPNELGGKVSLKLLFNDIEPVVPLPSLTRPTF 238 (499) T ss_pred ecCCCeEEEEEEEEEeecCeEEEEEEEEEecccceeeEEEEEEEEeccCccccCcccchhhhccCcCCceeecCCCccce Confidence 3333211 000 000 0000010000 011113 Q ss_pred EEecCCCc----cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEE-----eeCCCCCchHHHHHHHHHHHhc Q lcl|Aclame:pro 166 IHMKLLSI----DGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVL-----TVKGGGLLSDKDKASRSRSFMK 236 (392) Q Consensus 166 ih~~~~~~----~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~-----~~~~~~~~~~~~~~~~~~~~~~ 236 (392) .|++.+-. .+...|.|.+.-+...++..+.......+-++.| ....++ ....+..... .. .+.. T Consensus 239 ~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v~~~~l~~~~~~~g~~--~~----~~~~ 311 (499) T protein:vir:80 239 IYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKLG-KKKVLVPSSFVKTAVNLDGST--TQ----YFDS 311 (499) T ss_pred EeecCCccccccCCCccCCchHhhHHHHHHHHHHHHHHHHHHHHhc-ccceecchhhhhccCCCCCCc--cc----CCCc Confidence 44443311 2334699999999999998888876666777654 333332 1111000000 00 0000 Q ss_pred cccCCceee---ccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHH---HHHHHH Q lcl|Aclame:pro 237 RSRSGGPVV---LDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYA---SALNRY 310 (392) Q Consensus 237 ~~~~g~~~v---l~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~---~~l~p~ 310 (392) .....+.+. -+++-.++.++....+-++.+..+...++|....|+++..+|...++..+..+...-.+ .++.-. T Consensus 312 ~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~fg~~~~g~~TAtei~s~~~~l~~~~~~~ 391 (499) T protein:vir:80 312 TDEAFFLYQGEQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVVSEKSETYQTKNSH 391 (499) T ss_pred ccceeeEeeccCCCCcCceeEecCcCChHHHHHHHHHHHHHHHHhcCCChhhcCCCcccchhHHHHHHHHHHHHHHHHHH Confidence 000001111 12333577788777777788999999999999999999999865443322222211111 112222 Q ss_pred HHHHHHHHHHHh------------h-------hhhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCc Q lcl|Aclame:pro 311 LRPAISELEYKL------------S-------DHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPK 371 (392) Q Consensus 311 l~~i~~~l~~~l------------~-------~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~ 371 (392) .+.++..|.+.+ . ..+.+++..-+..|.++.+....+++.+|+++.-.++..+ .|.... T Consensus 392 ~~~~~~~l~~l~~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~~~~Gi~S~et~l~~~--~~~~d~ 469 (499) T protein:vir:80 392 SQLIEQGIKEMIVSILEVGKLIKAYDGDTVELDTITVDFDDSIAQDEDTTINRYTTAKNQGMIPLKIALQRA--WNITEA 469 (499) T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhc--CCCChH Confidence 222222222110 0 0133334444445667778888899999999988765432 233222 Q ss_pred c----cccc--cC---CCC-CCCCCCCCCC Q lcl|Aclame:pro 372 D----LPAP--EN---TNK-KTTGQSNEPV 391 (392) Q Consensus 372 e----~~~~--~~---~~~-~~~gd~~~p~ 391 (392) + +.+. |. ++. ..+|..++.= T Consensus 470 ea~~el~~i~~E~~~~~~~~d~~g~~ge~e 499 (499) T protein:vir:80 470 EADEWAEMLAKEKQAEIPNNDMTGIFGEEE 499 (499) T ss_pred HHHHHHHHHHHHhhcCCCCCCccccCCCCC Confidence 2 1111 11 111 1122212111 No 158 >protein:vir:5839 Length: 533 # NCBI annotation: similar to portal vertex protein of head # Family: family:all:1036 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835625;genbank:gi:30044028 Probab=98.37 E-value=1e-06 Score=53.47 Aligned_cols=384 Identities=15% Similarity=0.104 Sum_probs=169.4 Q ss_pred Cc-chhhhhhcc---------c---ccccccccccccccCcch-----hhhhhhccCCCCc----cc--chhhhhcchHH Q lcl|Aclame:pro 1 MI-LPILNFINQ---------T---NDPPEAGSVQSYFPDGND-----AQIMESLLGDNNE----WV--SARAALRNSDL 56 (392) Q Consensus 1 m~-Mg~~n~~~~---------~---~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~----~~--~~~~al~~~~v 56 (392) |+ +.+|..... . ...+....-.+..+.... ......+.++... -+ -.+.++.+|.| T Consensus 1 ~~~~~~w~~~de~~~~~~~~~~~~~~~~p~~~dG~s~i~~~~~~~~~~~~~~~~~~gg~~~n~~eLI~~YR~ma~~~pEV 80 (533) T protein:vir:58 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLI 80 (533) T ss_pred CCCcchhhhhhHHHHHHHhhchhhcccCccCCCCCccccCCCCcchhhhhhhhhhhccccccHHHHHHHHHHhhccCcch Confidence 22 222211000 0 001111111122221111 1111112221111 01 12445678999 Q ss_pred HHHHHHHHHhhhhC-----ceeeecchh-------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEec-ccCCceeE Q lcl|Aclame:pro 57 FSIILQLSSDLAIV-----KINAEKKKN-------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWR-NANGADMK 123 (392) Q Consensus 57 ~~~i~~ia~~ia~l-----p~~~~~~~~-------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r-~~~G~~~~ 123 (392) .+||+.|++.+... |+.+.-.+. ..++.--|-...+ ..++..|...|..|..+.- +.++-+.+ T Consensus 81 d~AideIvneaiv~d~~~~pV~v~l~~~e~s~~iK~kI~~lldf~~~~----~~~fR~WYVDGriy~Hkiik~~k~GI~e 156 (533) T protein:vir:58 81 STVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNA----YPIIRNMIKYGDMFLHILEKGSDGTIEK 156 (533) T ss_pred hhHHHhhhceeeEecCCCceeEeecccccccHHHHHHHHHHhcchhhh----hHHHHhhhhcceeEEEeccCCcccchhh Confidence 99999999987543 222221110 0111112222333 3456677789999998863 24455779 Q ss_pred EEEeccccceeeecCCCceEEEEEEecC---CcceeeEEEecceEEEecCCCcc-ccccCCCHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 124 WEYLRPSQVNTYYFEYENGMYYNITFDD---PKIEPILQAPQSDLIHMKLLSID-GGKTGISPLYSLRRESKIQRASDRL 199 (392) Q Consensus 124 l~~l~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~vih~~~~~~~-~~~~G~s~l~~~~~~i~~~~~~~~~ 199 (392) |..|+|..++.+++..+...|+.+...+ ......+.++.+.|+|+..-..+ ...+++|-|..+.+.+....-+... T Consensus 157 lr~lDPr~i~~vr~~~t~~eyyvy~~~~~~~~s~~~~~kI~~daI~y~~SGl~d~~~~~iisyLhkAiKp~NQLkmiEDA 236 (533) T protein:vir:58 157 FQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDA 236 (533) T ss_pred heecCCeeeEEEEeeccceEEEeecccccccccCccccccchhheeeeeeccccCCCCceehhhhHHHHHHHHHHHHHHH Confidence 9999999999998887776666554221 12223478899999998753222 2346778788876655555444443 Q ss_pred HHHHHHccCCcc--eEEeeCC--CCCchHHHHHHH----HHHHhccccCCce----------eec----------cCCce Q lcl|Aclame:pro 200 TISSLNSSLNVP--GVLTVKG--GGLLSDKDKASR----SRSFMKRSRSGGP----------VVL----------DDLEE 251 (392) Q Consensus 200 ~~~~~~ng~~~~--~i~~~~~--~~~~~~~~~~~~----~~~~~~~~~~g~~----------~vl----------~~g~~ 251 (392) ..-+=-..+.-+ ..+.+.+ ..+.++ -.+.. ++...-..+.|.+ -.+ ..|.+ T Consensus 237 lVIYRisRAPeRRvFYIDVGNlpk~KAeq-Yl~~im~k~kNklvYDa~TGev~ddrk~m~~~sMlEDyWLpRReGgrgTE 315 (533) T protein:vir:58 237 LMLYRVVRSVDRRVFYVDVGNVPPDKINE-YLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVE 315 (533) T ss_pred HHHHhhcCChhheEEEEeecCCCccCHHH-HHHHHHHhcccceEEeccCCeEeeccchhhhhhhHhhhcccccCCCccce Confidence 322211111111 2233322 111121 11111 1111111222222 111 25677 Q ss_pred EEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hc- Q lcl|Aclame:pro 252 FTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSI--QQISGMYASALNRYLRPAISELEYKLSDH-IS- 327 (392) Q Consensus 252 ~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~--~~~~~~~~~~l~p~l~~i~~~l~~~l~~~-~~- 327 (392) ++.|... . +.-++-..+..+.+..+++||..-|+..+...... .-.+--+..||.-+-..+.+.|...|.-+ +- T Consensus 316 I~TLpGg-~-lgemeDV~YF~kkLy~ALnVP~sRl~~e~~fgr~~eItRDEiKF~KFI~rLR~rF~~ll~~qLilk~iit 393 (533) T protein:vir:58 316 IDILQGS-K-VDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGFFVEELERMVRMNKEFA 393 (533) T ss_pred eeecCCC-C-CCcHHHHHHHHHHHHHHhCCCeeecCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHhcccccccCcc Confidence 7777753 3 55567778889999999999999998654432221 22233366777777777777777666311 00 Q ss_pred -cchhhhhhcCh--HH------HHHHHHHHHhC-Cc------------cCHH--HHHHHHHh---CCCCCcccccccCCC Q lcl|Aclame:pro 328 -VNMRPAIDPLG--DN------YLSTISTATRW-GA------------LAEN--QATFVLQE---AGYIPKDLPAPENTN 380 (392) Q Consensus 328 -~d~~~~~~~~~--~~------~~~~~~~~~~~-g~------------~t~n--E~R~~l~~---~g~~~~e~~~~~~~~ 380 (392) -+++..+..|. .+ +..+++.+-+. ++ +|-+ +-.++... .|.-+.+... +++. T Consensus 394 ~eew~~~f~~Dn~f~ElKe~Eil~~Ri~~l~~~dpyvgk~yi~k~ILr~tdei~~q~e~ie~E~~~~~~~~~~~~-~e~~ 472 (533) T protein:vir:58 394 DQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFG-EETT 472 (533) T ss_pred hhheeeeeeccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCChhhhHHHHHHHHhhcCCCCCCCCcc-cccC Confidence 00000111110 11 11111111110 00 1110 01111111 2221111010 1111 Q ss_pred CC-CCC----------------CCCCCCC Q lcl|Aclame:pro 381 KK-TTG----------------QSNEPVP 392 (392) Q Consensus 381 ~~-~~g----------------d~~~p~p 392 (392) |. -.| ...+|.| T Consensus 473 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 501 (533) T protein:vir:58 473 PADFLGERGSPIESPRGRTEFDFGTEGGE 501 (533) T ss_pred CcccCccccCcccCCCChhhHhcccCCcc Confidence 11 011 1111222 No 159 >protein:vir:103219 Length: 201 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277473;genbank:gi:71834115;genbank:GeneID:3562330 Probab=98.35 E-value=4.3e-08 Score=60.94 Aligned_cols=172 Identities=14% Similarity=0.097 Sum_probs=91.7 Q ss_pred EEeeCC---CCCchHHH-HHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCC Q lcl|Aclame:pro 213 VLTVKG---GGLLSDKD-KASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGG 288 (392) Q Consensus 213 i~~~~~---~~~~~~~~-~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~ 288 (392) |+++++ .....+.. ++++........+.+.+.+..++-+|++++.+...+ .+......+.||++-|||...|-+ T Consensus 1 V~k~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ld~~~e~~e~~~~~lsGl--~d~l~~~~~~iaa~s~iP~t~LfG 78 (201) T protein:vir:10 1 MWKAKGLADLCDDSDGAARLRLAQVDNNSGVGQAIGIDADSEEYNVLNSDIGGI--DTFLSQKFDRIVALSGIHEIILKG 78 (201) T ss_pred CccchHHHHHhcCChHHHHHHHHHHHHhhhhhhhheeecCCcceeeeecCcCCh--HHHHHHHHHHHHhHhcCchhhhcC Confidence 555543 11112222 222222222233334455555667888888776644 467777888999999999997733 Q ss_pred -cccccc-hH-HHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhhccchhhhhhcChHHH-------HHHHHHHHhC Q lcl|Aclame:pro 289 -QGDQQS-SI-QQISGMY-------ASALNRYLRPAISELEYKLSDHISVNMRPAIDPLGDNY-------LSTISTATRW 351 (392) Q Consensus 289 -~~~~~~-~~-~~~~~~~-------~~~l~p~l~~i~~~l~~~l~~~~~~d~~~~~~~~~~~~-------~~~~~~~~~~ 351 (392) ...+-| +. ...+.|| +..+.|.++.+-+-+. +.+.+.+.+..+..++.+++ ++.+..++.. T Consensus 79 ~sp~Glnatge~d~~nyyd~i~~~Qe~~l~p~le~l~~~~~--~~~~~~~~f~pL~~~s~kekAei~~~~a~a~~~~~~~ 156 (201) T protein:vir:10 79 KNVGGVSASQNTALETFYGYVDRKRKAELLPLLEFLLPFIV--TEQEWSVEFNPLSQVSDKDKSEILEKNVNSVAALIAA 156 (201) T ss_pred CCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCceEeeCCCCCCCHHHHHHHHHHHHHHHHHHHHc Confidence 222211 22 2233333 3445555554443221 12345555666666665554 4567788899 Q ss_pred CccCHHHHHHHHHhCC---CCCccc-----ccccCCCCCCCCCCC Q lcl|Aclame:pro 352 GALAENQATFVLQEAG---YIPKDL-----PAPENTNKKTTGQSN 388 (392) Q Consensus 352 g~~t~nE~R~~l~~~g---~~~~e~-----~~~~~~~~~~~gd~~ 388 (392) |+++++|+|+.|...| +.+++. ...+..+|...+..+ T Consensus 157 g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~e~~dp~~~~~~~ 201 (201) T protein:vir:10 157 GIIDADEARDTLRAISTEVKIGEGSIQTEVVINESEDPLDVSANN 201 (201) T ss_pred CCCCHHHHHHHHHhcCCcCCCCCCCCCccccccccCCCCCCCCCC Confidence 9999999999986644 333221 111222222222222 No 160 >protein:vir:99072 Length: 479 # NCBI annotation: gp27 # Family: family:all:524 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655892;genbank:gi:109521464;genbank:GeneID:4158037 Probab=98.33 E-value=1.3e-06 Score=52.85 Aligned_cols=367 Identities=8% Similarity=-0.034 Sum_probs=153.2 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhh----cchHHHHHHHHHHHhhhhCceeeec Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAAL----RNSDLFSIILQLSSDLAIVKINAEK 76 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al----~~~~v~~~i~~ia~~ia~lp~~~~~ 76 (392) |+..+-....+... ...++- +.. .+......... .....+ .+....-+|+.++..+---.+.+-+ T Consensus 22 l~~~~~~~~~r~~~------~~~YY~-g~~-~i~~~~~~~~~---~~~~~~~~~~~~n~~~~iVd~~~~~l~~~gf~~~d 90 (479) T protein:vir:99 22 VFPKMNTECERLDD------FEAWTK-NGQ-EVPDLATRHKN---KEREVLQQLSRKPWMGLMVNSFAQQLIVDGYRKTG 90 (479) T ss_pred HHHHHHHHhHHHHH------HHHHHh-cCC-cccccccccCC---hhHHHHHHHhhcCcHHHHHHHHHhhcccccccCCC Confidence 22222111100000 000000 000 00000000000 000111 1112334555555433222233322 Q ss_pred chhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEec-----ccCCceeEEEEeccccceeeecCCCceE--EEEEEe Q lcl|Aclame:pro 77 KKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWR-----NANGADMKWEYLRPSQVNTYYFEYENGM--YYNITF 149 (392) Q Consensus 77 ~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r-----~~~G~~~~l~~l~~~~v~~~~~~~~~~~--~~~~~~ 149 (392) .+....+.+-...-........+..+++.+|.||+++.+ +..|.+ .+..++|..+.+.+++..... .+.+.. T Consensus 91 ~~~~~~~~~i~~~N~~d~~~~~~~~~a~~~G~af~~v~~~~~~~d~~g~~-~i~~~~p~~~~~iydd~~~~~~~~~~~~~ 169 (479) T protein:vir:99 91 TNENAKGWDTWRLNQMDKQQFWLNRAVLTFGYAFIKVTSGISPLDGTTVA-RIKCIDPRDAFAIWEDPYWDEWPKYLLER 169 (479) T ss_pred chhhHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCCCcCCCCce-EEEEechhheEEEecCCcccceeeEEEee Confidence 222211111100012234556678888999999998874 344544 466778888887765433211 111111 Q ss_pred cCC-----------------cce------eeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHc Q lcl|Aclame:pro 150 DDP-----------------KIE------PILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNS 206 (392) Q Consensus 150 ~~~-----------------~~~------~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~n 206 (392) ... ... ....+..-.|+++.++...+ ..|.|-+..+...++....+..-..+..+- T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~~-~~g~sd~e~v~~liDa~~~~~s~~~~~~~~ 248 (479) T protein:vir:99 170 QPNGQYWWWTEEDYSIFEFKQGKFIYRETVSHDYGHIPFVRYVNVMDLR-GVCYGDVEPLVTVAKAIDKTGLDILLVQHH 248 (479) T ss_pred cCceeEEEEecceEEEEEecCCceeeccccccCCCCcceEEeecCCCcC-cCCcchhHHHHHHHHHHHHHHHHHHHHHHH Confidence 100 000 00112334456666543322 358898888877777777666555555555 Q ss_pred cCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceee-ccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHH Q lcl|Aclame:pro 207 SLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVV-LDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSY 285 (392) Q Consensus 207 g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v-l~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~ 285 (392) .+.|..++.--......+.....+ . ...++++. -+++.++.++..... ..+++..+..+.+|+..=++|++. T Consensus 249 ~a~p~~~i~G~~~~~~~~~~~~~~-~-----~~~~~i~~~~~~~~~~~q~~~~~~-~~~~~~l~~~i~~i~~~t~~p~~~ 321 (479) T protein:vir:99 249 QSFQIRWATGLMLPEGANADQEKM-R-----FAQESMLISQNEKASFGAIPAAPL-DGLLNAYKESLLEFLALAQLPPHI 321 (479) T ss_pred hhchhhhhcCCCcccccccchhcc-c-----cccccceeecCCCceEEEecccch-HHHHHHHHHHHHHHhccCCCCHHH Confidence 556655544211111111101000 0 11123333 356778877764332 336778888889999999999999 Q ss_pred cCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------------hhccchhhhhhcChHHHHHHHHH Q lcl|Aclame:pro 286 IGGQGDQQSSIQQISGMYASALNRYLRPAISELEYKLSD------------------HISVNMRPAIDPLGDNYLSTIST 347 (392) Q Consensus 286 lg~~~~~~~~~~~~~~~~~~~l~p~l~~i~~~l~~~l~~------------------~~~~d~~~~~~~~~~~~~~~~~~ 347 (392) +|..++ .+..+++.. ...+.-.+...+..|...|-. .+.+.+....-.+..+.+..+.+ T Consensus 322 ~g~~~n--~Sg~Al~~~-~~~l~~ka~~~~~~f~~al~~~~~l~~~~~~~~~~~~~~~i~~~w~~~~~~s~~~~ad~~~k 398 (479) T protein:vir:99 322 AGQIVN--VAADALAAG-TRQTMQKLFEKQATWKASHNQTMRLVNKIEGRTEEATDLDFTITWQDVTIQSLAQFADAWAK 398 (479) T ss_pred cccccc--hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceeeeEEecCCCCCCHHHHHHHHHH Confidence 986432 222233221 122222222222222221110 01111111112355667778888 Q ss_pred HHhCCccCHHHHHHHHHhCCCCCcccccc--------------cCC-------------CCCCCCCCCCCCC Q lcl|Aclame:pro 348 ATRWGALAENQATFVLQEAGYIPKDLPAP--------------ENT-------------NKKTTGQSNEPVP 392 (392) Q Consensus 348 ~~~~g~~t~nE~R~~l~~~g~~~~e~~~~--------------~~~-------------~~~~~gd~~~p~p 392 (392) ++++|+++...+.+++ .|+.+.++..+ +.+ ++.+..++..+.| T Consensus 399 l~~ag~is~et~l~~l--~gv~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (479) T protein:vir:99 399 MVESLKIPAEGVWDMI--PNLDQSTVNGWKEIYDREGDFGKYMRKLQNGPDPAEQRGGPNGATNMQQANNKT 468 (479) T ss_pred HHhcCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccCCCCCCCCCCCCCCCC Confidence 8888887776555443 24433221110 000 0000111111112 No 161 >protein:vir:1634 Length: 409 # NCBI annotation: Structural protein # Family: family:all:524 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695055;genbank:gi:23455746;genbank:GeneID:955506 Probab=98.20 E-value=2.7e-06 Score=51.13 Aligned_cols=344 Identities=10% Similarity=-0.020 Sum_probs=145.4 Q ss_pred Ccchhhhhhccccc-ccccc-cccccccCcchhhhhhhccCCCCcccchhhh----hcchHHHHHHHHHHHhhhhCceee Q lcl|Aclame:pro 1 MILPILNFINQTND-PPEAG-SVQSYFPDGNDAQIMESLLGDNNEWVSARAA----LRNSDLFSIILQLSSDLAIVKINA 74 (392) Q Consensus 1 m~Mg~~n~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a----l~~~~v~~~i~~ia~~ia~lp~~~ 74 (392) |=.-+++.+.+.-. ...+. ....++ .+.. .+ ..-+..+.++.. +......-+|+-+|..+ -+.- T Consensus 1 ~~~~~i~~L~~~~~~~~~r~~~~~~yY-~g~~-----~~-~~~~~~~p~~~~~~~~~v~nw~~~iVds~a~rl---~~~G 70 (409) T protein:vir:16 1 MTEKGIGYLRFKLSVHKRRAEMRYEQY-AMKH-----VD-RFKGITIPQALSQQYRSILGWCAKGVDSLADRL---VFRE 70 (409) T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHH-hccC-----ch-hhcchhhhHHHHHHHhhhcChhHHHHHHhHhhc---cccc Confidence 33333332221100 00000 000000 0000 00 000001111000 00111222333333322 2222 Q ss_pred ecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEe--cCC Q lcl|Aclame:pro 75 EKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITF--DDP 152 (392) Q Consensus 75 ~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~--~~~ 152 (392) ++.+... +.+-...-........+..+.+.+|.+|+.+..+.+|.| .+.+++|..+...+|...+.+...+.+ .+. T Consensus 71 f~~~d~~-l~~i~~~N~ld~~~~~~~~~al~yG~sf~~v~~~~dg~~-~i~~~sP~~~~~i~D~~~~~~~~a~~~~~~d~ 148 (409) T protein:vir:16 71 FENDDFT-VNEIFEENNPDIFFDSTVLSALIASCSFTYISKGENDAV-RLQVIEATNATGIIDPITGLLTEGYAVLERDE 148 (409) T ss_pred ccCcchH-HHHHHHhcChhHHHHHHHHHHHHhCceeEEEecCCCCce-EEEEEcccceEEEeecccccceeeeEEEEecC Confidence 2221111 111111223344556777788999999999999888876 577888888888776654433221111 110 Q ss_pred cce------------------------eeEEEecceEEEecCCCccccccCCCH----HHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 153 KIE------------------------PILQAPQSDLIHMKLLSIDGGKTGISP----LYSLRRESKIQRASDRLTISSL 204 (392) Q Consensus 153 ~~~------------------------~~~~~~~~~vih~~~~~~~~~~~G~s~----l~~~~~~i~~~~~~~~~~~~~~ 204 (392) ..+ ..-.+..-.|++|.+....+...|.|- +..+.+.+.....-......++ T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~~~~~~~~G~seI~~~v~~l~da~~r~~~~~~~~~e~~ 228 (409) T protein:vir:16 149 NNNVVLEAHFLPDRTDYYYRDSRNNISIANPTGNPLLVPIIHRPDAVRPFGRSRITRSGMYWQSNAKRTLERADVTAEFY 228 (409) T ss_pred CCceEEEEEEecCcEEEEEecCccccceecCCCCcceEEecccccccccCCccccchhHHHHHHHHHHHHHHHHHHHHHh Confidence 000 001111223455554333334467774 4444444443333333344454 Q ss_pred HccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeecc-----CCceEEeccCChhhHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 205 NSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLD-----DLEEFTALEIKSNVAQLLSQTDWTSKQYAKVY 279 (392) Q Consensus 205 ~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~f 279 (392) .+ ....++.++.+....+..... .++++.++ ++.++.++..+.-+ .|++..+.....+|.+= T Consensus 229 a~--pqr~i~G~d~d~~~~~~~~~~----------~~~i~~~~~d~~g~~~~v~q~~~~~l~-~~~~~l~~~~~~~a~~s 295 (409) T protein:vir:16 229 SF--PQKYVTGLSDDAEPMETWKAT----------VSSMLQFTKDEDGDKPTLGQFTQPSMS-PFTEQLRTAAAGFAGET 295 (409) T ss_pred cC--hhheeEecCCCCCccchhhhh----------hhHhhccCCCCCCCCceEEecCCCChh-HHHHHHHHHHHHHhhhc Confidence 33 223444444332222211111 12233332 34567666554322 48999999999999999 Q ss_pred cccHHHcCCcccccchHHHHHHHH---HHHHHHHHHHHHHHHHHHh--hh--------------hhccchhhhhhcC--- Q lcl|Aclame:pro 280 GLPDSYIGGQGDQQSSIQQISGMY---ASALNRYLRPAISELEYKL--SD--------------HISVNMRPAIDPL--- 337 (392) Q Consensus 280 gVP~~~lg~~~~~~~~~~~~~~~~---~~~l~p~l~~i~~~l~~~l--~~--------------~~~~d~~~~~~~~--- 337 (392) ++|++.+|+.+.+-++.+++++-. .....-.-+.+.+.+.+.+ .- .++..+.....++ T Consensus 296 ~lP~~~lg~~~~NpsSa~Ai~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~~~~~~~~~~~~~~~~~v~W~~~~~~~~~s 375 (409) T protein:vir:16 296 GLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYLAACLRDDVPYLREQFSKTKPKWEPLFEADASM 375 (409) T ss_pred CCCHHHcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhccceEEecCCCCcchhh Confidence 999999998655434443333211 1111111222222222211 00 0111122222222 Q ss_pred hHHHHHHHHHHHhCC--ccCHHHHHHHHHhCCCCCcc Q lcl|Aclame:pro 338 GDNYLSTISTATRWG--ALAENQATFVLQEAGYIPKD 372 (392) Q Consensus 338 ~~~~~~~~~~~~~~g--~~t~nE~R~~l~~~g~~~~e 372 (392) ....+..+.+++++| ++..+-+++++ |+...| T Consensus 376 ~a~~aDa~~Kl~~a~~~~~~~~v~~~~~---g~~~~d 409 (409) T protein:vir:16 376 LSLIGDGAIKLNQAIPEFINKDTIRDLT---GIKGAE 409 (409) T ss_pred HHHHHHHHHHHHhhcccccchhHHHHhc---cCCCCC Confidence 234455666777765 23334445544 776555 No 162 >protein:vir:106027 Length: 629 # NCBI annotation: gp9 # Family: family:all:2798 # MgeID: mge:1505 # MgeName: Cooper # Cross-refs: genbank:acc:YP_654906;genbank:gi:109392362;genbank:GeneID:4157055 Probab=98.19 E-value=2.9e-06 Score=50.96 Aligned_cols=384 Identities=12% Similarity=0.049 Sum_probs=193.8 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhh-hhccCCC---Ccccchhhhhc-chHHHHHHHHHHHhhhhCceeee Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIM-ESLLGDN---NEWVSARAALR-NSDLFSIILQLSSDLAIVKINAE 75 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~al~-~~~v~~~i~~ia~~ia~lp~~~~ 75 (392) |.--=+...++....+.+.+...-.-...-...+ ..+.+.+ ...-..-.++. .+.+.-.+..+++++|++.+..- T Consensus 1 ma~~~lrv~rrpk~~p~~r~l~aasqp~~P~~~~~~~~~g~~~~~~WQ~eAW~~~d~VgElryyvgW~~ss~Sr~rL~as 80 (629) T protein:vir:10 1 MAASTLRVSRRPKGSPARRSLTAASQPMEPGRTPSRQVAGTVVRTSWQNEAWECMDLVGELRYYVGWRASSCSRVELIAS 80 (629) T ss_pred CCccceeEEecCCCccceeeeccccCCCCcchhhchhhhhhhhhhhhhHHHHHHHHhhhhHHHHhhhhhhhheeeeEEEe Confidence 4444343444433333221111111000000011 1111110 00001111222 46778888899999999988765 Q ss_pred cchhh----------------h----hcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCC----cee-EEEEeccc Q lcl|Aclame:pro 76 KKKNQ----------------G----IIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANG----ADM-KWEYLRPS 130 (392) Q Consensus 76 ~~~~~----------------~----~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G----~~~-~l~~l~~~ 130 (392) +-+.+ . ...-----+...++++.+..+|.+-|+.|++++....+ .+. .++.+... T Consensus 81 ~idpDtg~ptg~i~ed~p~~~~v~~~v~~iagG~lGqaqLlkr~~~~ltV~GE~~i~il~~~~~~pd~~~r~~W~vVt~~ 160 (629) T protein:vir:10 81 ELDPDTGKPTGGIRDDDPDGLRFLEIVKTMAGGPLGQAQLQKRAAECLTVPGEHRICLLDQGDKNPDGSVRHNWYVVTND 160 (629) T ss_pred eecCCCCCCccccccCchhHHHHHHHHHHhcCccchHHHHHHHHHhheeccCceEEEEeecCCCCCCcccccceeeecHH Confidence 42211 1 11123344677889999999999999999998743333 333 45555555 Q ss_pred cceeeecCCCceEEEEEEecCCcceeeEEEecceEE-EecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCC Q lcl|Aclame:pro 131 QVNTYYFEYENGMYYNITFDDPKIEPILQAPQSDLI-HMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLN 209 (392) Q Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi-h~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~ 209 (392) .+.. +.++... ....++ .+.......+++ .+=.+.+.....--||+.++...+....-+.+...+..+.... T Consensus 161 Ei~~---kg~g~~~--i~lpdg--~~he~~~~~D~l~RvW~P~Prr~~e~DSpvra~l~~lrEi~r~tk~i~~aakSRL~ 233 (629) T protein:vir:10 161 EVKN---KGAGKTD--IELPDG--TIHEYSKGRDVMFRVWNPRPRRAKEPDSPVRACLDSLREIIRTTKKIRNASKSRLI 233 (629) T ss_pred Hhcc---ccCceeE--EEcCCC--ceeeeeCCCeeEEEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHhHHHHHhHHh Confidence 5542 2223222 222221 112222333332 2223344445567899999999988888887777776666666 Q ss_pred cceEEeeCCCCC------------------------chHHHHHHHHHH----HhccccCC--ceeecc----CCceEEec Q lcl|Aclame:pro 210 VPGVLTVKGGGL------------------------LSDKDKASRSRS----FMKRSRSG--GPVVLD----DLEEFTAL 255 (392) Q Consensus 210 ~~~i~~~~~~~~------------------------~~~~~~~~~~~~----~~~~~~~g--~~~vl~----~g~~~~~l 255 (392) -.|++.++...+ ..+....-+.+. +...+.+. -++++. .--+++.+ T Consensus 234 gnGvlflP~e~slp~~~ap~~~~~Pg~~~p~~~g~aa~d~l~~~l~q~a~aAi~De~S~aA~vPiia~vP~E~l~~ikhL 313 (629) T protein:vir:10 234 GNGVVFLPQELSLPRATAPVADNQPGAPVPIVDGVAAADELSNLLFQTAAAAVDDEDSQAALIPLLATVPGEHLQKIFHL 313 (629) T ss_pred hCceeEeccCcccccccCCCCCCCCcccccccCCCcchHHHHHHHHHHHHhhhcCCCCccceeeeEEeechHHhcCeeee Confidence 666766543211 122233333222 22222222 233332 11244444 Q ss_pred cC--ChhhHHHHHHHHHHHHHHHHHhcccHHHcCCc-ccccchHH-H-HHHHHHHHHHHHHHHHHHHHHHHhhhh----h Q lcl|Aclame:pro 256 EI--KSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQ-GDQQSSIQ-Q-ISGMYASALNRYLRPAISELEYKLSDH----I 326 (392) Q Consensus 256 ~~--~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~-~~~~~~~~-~-~~~~~~~~l~p~l~~i~~~l~~~l~~~----~ 326 (392) .+ ...+. -+.+++..+.++|...-|||+.|=+. ++.+-+.. + ...-++..|+|.+..|+++|+..+++. . T Consensus 314 kf~~eite~-~iktR~daI~RlAmglDispErLLGlGsd~NHWsAWqI~dedvrlHI~P~l~~ic~Ait~~~Lrp~L~~e 392 (629) T protein:vir:10 314 KIGNEITEV-EIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVQLHIKPVMEVLCAAIYREVLVATLRAE 392 (629) T ss_pred eecCchhHH-HHhhHHHHHHHHHhccCCChhheeeccCCccceeeEEecccceeeecchHHHHHHHHHHhHHHHHHHHHh Confidence 44 33333 48899999999999999999976443 34432221 1 234456789999999999999887642 2 Q ss_pred ccchhhhh---hcCh----HHHHHHHHHHHhCCccCHHHHHHHHHh---CCCCCcccccc-------------------- Q lcl|Aclame:pro 327 SVNMRPAI---DPLG----DNYLSTISTATRWGALAENQATFVLQE---AGYIPKDLPAP-------------------- 376 (392) Q Consensus 327 ~~d~~~~~---~~~~----~~~~~~~~~~~~~g~~t~nE~R~~l~~---~g~~~~e~~~~-------------------- 376 (392) ++|-.... +.+. -++...+..+...|.+|-.+.|+.|+. .||.+.-.+.. T Consensus 393 GiDp~~Yvvw~DaS~Lt~dPd~~deA~~a~drGaIt~eAlRr~lG~~~dd~y~~~t~~~~q~~A~~~v~~~P~Li~~~ap 472 (629) T protein:vir:10 393 GIDPDRYVLWYDASGLTVDPDKTDEATAAKEQGAITHEAYRRYLGLADEDGYDLETLEGAQAWARDAIVADPSLIKVLAP 472 (629) T ss_pred CCCHHHhEeeecCcccccCCCCcHHHHHHHHcCCccHHHHHHHhccccccCCCcCCcHHHHHHHHHHhcCCCchhhhhhh Confidence 34432211 1110 113345667788999999999998753 23333221100 Q ss_pred --------cCCCC----CCCC-----------CCCCCCC Q lcl|Aclame:pro 377 --------ENTNK----KTTG-----------QSNEPVP 392 (392) Q Consensus 377 --------~~~~~----~~~g-----------d~~~p~p 392 (392) .++|+ .+.| +.++|.| T Consensus 473 ll~~~l~~i~~P~p~~a~~~~~~~~~~~E~~~~~~e~~~ 511 (629) T protein:vir:10 473 LLTDELAEIDWPEPPAALPPGEDDQADEEQDTTGSEPST 511 (629) T ss_pred hcCCccccccccCCCCcCCCCCcccCccccCCCCCCcCC Confidence 00110 0011 1111111 No 163 >protein:vir:9751 Length: 422 # NCBI annotation: putative structural protein # Family: family:all:524 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795513;genbank:gi:28876291;genbank:GeneID:1257832 Probab=98.16 E-value=3.3e-06 Score=50.63 Aligned_cols=352 Identities=12% Similarity=0.052 Sum_probs=146.2 Q ss_pred Cc-chh---hhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhh-hhc---chHHHHHHHHHHHhhhhCce Q lcl|Aclame:pro 1 MI-LPI---LNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARA-ALR---NSDLFSIILQLSSDLAIVKI 72 (392) Q Consensus 1 m~-Mg~---~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-al~---~~~v~~~i~~ia~~ia~lp~ 72 (392) |= |++ +..+.+....- .....++ .+.. .+ ..-+..+.++. .+. .....-+|+-+|..+-=--| T Consensus 1 m~~~~i~~L~~~~~~~~~r~--~~~~~yy-~g~~-----~~-~~~~~~~p~~~~~~~~~v~nw~~~~Vd~~a~rl~~~Gf 71 (422) T protein:vir:97 1 MNYMGMGYLRRKLALFKTGV--DKRYRYY-AMDD-----RD-DTRSIVMPNNVREMYRSVLEWTAKGVDSLADRIIFREF 71 (422) T ss_pred CChHHHHHHHHHHHHHHHHH--HHHHHHH-hcCC-----Ch-hhcCccccHHHHHHHHhhcchhHHHHHHHHhcccccee Confidence 21 111 11111110000 0000000 0000 00 00011111111 010 01112223333331111112 Q ss_pred eeecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEeccc-CCceeEEEEeccccceeeecCCCceEEEEEE-e- Q lcl|Aclame:pro 73 NAEKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNA-NGADMKWEYLRPSQVNTYYFEYENGMYYNIT-F- 149 (392) Q Consensus 73 ~~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~-~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~-~- 149 (392) ..-+.....++.+ |. .......+..+.+.+|.||+++.++. +|.| .+.+++|..+...+|...+.+...+. + T Consensus 72 ~~~d~~l~~~w~~-N~---ld~~~~~~~~~al~~G~sf~~v~~~~~~~~p-~i~~~sp~~~~~i~D~~~~~~~~a~~~~~ 146 (422) T protein:vir:97 72 TNDDFNAWEIFKA-NN---PDIFFDTAIQSALIASCCFVYIMPGAEDGLP-KMQVIEASKATGILDPTTFLLTEGYAILE 146 (422) T ss_pred eCCchhHHHHHHh-cC---hHHHHHHHHHHHHHhcceeEEEeeCCCCCee-EEEEechhhEEEEEeCCCCcceeeEEEEE Confidence 2111111122221 32 23344567778899999999998775 5665 58889999999888765544332111 1 Q ss_pred -cCC-cceeeEEEecc---------------------eEEEecCCCccccccCCCHH-HHHHHHHHHHHHHH---HHHHH Q lcl|Aclame:pro 150 -DDP-KIEPILQAPQS---------------------DLIHMKLLSIDGGKTGISPL-YSLRRESKIQRASD---RLTIS 202 (392) Q Consensus 150 -~~~-~~~~~~~~~~~---------------------~vih~~~~~~~~~~~G~s~l-~~~~~~i~~~~~~~---~~~~~ 202 (392) +.. .......++.. .|++|.+....+..+|.|.+ ..+...++..+... ..... T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~~e 226 (422) T protein:vir:97 147 SDSNGNPTLEAYFTDKDIWYYPKKGKPYNIKNPTGHPLLVPIIHRPDAVRPFGRSRITKAGMYHQKAAKRTLERAEVTAE 226 (422) T ss_pred ecCCCcEEEEEEEcCceEEEEcCCCccccccCCCCCcceEEecccCCCccccCccccchhHHHHHHHHHHHHHHHHHHHH Confidence 111 00001112222 33445443333445677754 23333333333222 22233 Q ss_pred HHHccCCcc-eEEeeCCCCCchHHHHHHHHHHHhccccCCceeecc-----CCceEEeccCChhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 203 SLNSSLNVP-GVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLD-----DLEEFTALEIKSNVAQLLSQTDWTSKQYA 276 (392) Q Consensus 203 ~~~ng~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia 276 (392) ++. .|. .++.++.+....+.... ..++++.++ ++.++.++..+.-+ .+++..+.....+| T Consensus 227 ~~a---~pqr~i~G~d~d~~~~~~~~~----------~~~~i~~~~~de~~~~~~v~q~~~~~l~-~~~~~l~~~~~~~a 292 (422) T protein:vir:97 227 FYS---FPQKYVLGMDPDAKPMEKWRA----------TVSTLLEISKDEDGDKPTVGQFTTASMA-PFMEHLKMYASLFA 292 (422) T ss_pred Hhc---chhhhhcccCcccccCchhhh----------hhhhhhccCCCCCCCcceeeecCCCChh-HHHHHHHHHHHHHh Confidence 333 233 33333322221111111 112344443 23567666654332 48999999999999 Q ss_pred HHhcccHHHcCCcccccchHHHHHHH---HHHHHHHHHHHHHHHHHHHh------hh----------hhccchhhhhhcC Q lcl|Aclame:pro 277 KVYGLPDSYIGGQGDQQSSIQQISGM---YASALNRYLRPAISELEYKL------SD----------HISVNMRPAIDPL 337 (392) Q Consensus 277 ~~fgVP~~~lg~~~~~~~~~~~~~~~---~~~~l~p~l~~i~~~l~~~l------~~----------~~~~d~~~~~~~~ 337 (392) .+=++|++.+|+.+++.++.++++.- ....+.---+.+.+.+.+.+ .. .+.+.+...++.+ T Consensus 293 ~~s~lP~~~lg~~~~NpsSa~Ai~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~~~~~~~~~~~~~~~~~~~w~p~~~~~ 372 (422) T protein:vir:97 293 GGSGLTLDDLGFPSDNPSSVESIKAAHENLRAAGRKAQRSFSSGFLNVAYIAVCLRDEFPYLRNQFMDTVIKWEPLFEAD 372 (422) T ss_pred cccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhccceEEEccCCCCC Confidence 99999999999866543444443321 11111222222222222211 00 0112222222334 Q ss_pred hHHH---HHHHHHHHhC--CccCHHHHHHHHHhCCCCCc--ccccccCCCCCCC Q lcl|Aclame:pro 338 GDNY---LSTISTATRW--GALAENQATFVLQEAGYIPK--DLPAPENTNKKTT 384 (392) Q Consensus 338 ~~~~---~~~~~~~~~~--g~~t~nE~R~~l~~~g~~~~--e~~~~~~~~~~~~ 384 (392) ..+. +..+.+++++ |++...-++++| |+... +.+..+... ..| T Consensus 373 ~~s~a~~aDa~~Kl~~a~~~~~~~~~~~~~l---g~~~~~~~~~~~~~~~-~d~ 422 (422) T protein:vir:97 373 ANMLTLVGDGAIKLNQAIPGFMDADVIRDLT---GVKGADKPIPAITEVT-TDG 422 (422) T ss_pred hHHHHHHHHHHHHHHhhccccccHHHHHHHc---CCCchhHHHHHHHhhh-ccC Confidence 3333 4445566666 677777777665 77543 344444332 122 No 164 >protein:vir:3028 Length: 500 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438141;genbank:gi:16271804;genbank:GeneID:929241 Probab=98.14 E-value=3.7e-06 Score=50.36 Aligned_cols=380 Identities=8% Similarity=0.044 Sum_probs=166.0 Q ss_pred chhhh----hhccccccccccc-------ccccccCcchhhh---hhhccCCCC-c---cc----chhhhhcchHHHHHH Q lcl|Aclame:pro 3 LPILN----FINQTNDPPEAGS-------VQSYFPDGNDAQI---MESLLGDNN-E---WV----SARAALRNSDLFSII 60 (392) Q Consensus 3 Mg~~n----~~~~~~~~~~~~~-------~~~~~~~~~~~~~---~~~~~~~~~-~---~~----~~~~al~~~~v~~~i 60 (392) ||+|+ ||++....-.... ..-..++.....+ ..++.+... . .. ..+..........++ T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~slnl~~~i~ 80 (500) T protein:vir:30 1 MGVIQKIKNLVTRSKYVMTTQSLTNITDHPKIAISKLEYDRITTNLKYYKSDWDSVLYLNTDGETKKRDLNHLPIARTAA 80 (500) T ss_pred CchHHHHHHHHHHHHHHhhcchhhhhhccccccCCHHHHHHHHHHHHHhcCCCCCcccccCCCCcccCceeecchHHHHH Confidence 88875 5544211100011 1111111111111 122221110 0 00 011122333344555 Q ss_pred HHHHHhhhhCcee--eecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecC Q lcl|Aclame:pro 61 LQLSSDLAIVKIN--AEKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFE 138 (392) Q Consensus 61 ~~ia~~ia~lp~~--~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~ 138 (392) +.+|+-+..=|.. +-+......+.+=-..-....-.+..+...+..|.+++.+..+. |.+ .+..++|..+-+.... T Consensus 81 ~~~A~lv~~e~~~i~~~d~~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~-~~~-~I~~v~ad~~~P~~~d 158 (500) T protein:vir:30 81 KKIASLVFNEQAEIKVDDDAANEFISETLKNDRFNKNFERYLESCLALGGLAMRPYVDG-DKV-RVAFVQAPVFLPLQSN 158 (500) T ss_pred HHHhhhhcCCcceEecCChHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCEEEEEEEeC-Cce-EEEEEcCCeeEEEEEc Confidence 6666655443432 22222222222211111223334455556666787877766553 333 3566777766553222 Q ss_pred CCce-----------------EEE----EEEecCCc----------------ceeeEE----------------EecceE Q lcl|Aclame:pro 139 YENG-----------------MYY----NITFDDPK----------------IEPILQ----------------APQSDL 165 (392) Q Consensus 139 ~~~~-----------------~~~----~~~~~~~~----------------~~~~~~----------------~~~~~v 165 (392) .++. .+| ++.+.++. .|..+. ++.--+ T Consensus 159 ~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~~~~~p~f 238 (500) T protein:vir:30 159 TQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEVYKDLKDEAKVTDVTRPIF 238 (500) T ss_pred CCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccccccCCcCcceEeccCCCccE Confidence 1111 110 00000000 000000 000112 Q ss_pred EEecCCCc----cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEE-----eeCCCCCchHH-HHHHH---HH Q lcl|Aclame:pro 166 IHMKLLSI----DGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVL-----TVKGGGLLSDK-DKASR---SR 232 (392) Q Consensus 166 ih~~~~~~----~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~-----~~~~~~~~~~~-~~~~~---~~ 232 (392) .|++.+.. .+...|.|.+..+...++..+.......+-++.|- ...++ ..+......+. ....+ .+ T Consensus 239 ~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~-~~i~v~~~~l~~~~~~~~g~~~~~~~~d~~~~ 317 (500) T protein:vir:30 239 TYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQ-RRVAVPESLTALTVRTTDGDVVPRPRFESDQN 317 (500) T ss_pred EEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCc-ceeeechHHhcccCCCCCccccCCcccCCCcc Confidence 34443211 12346999999999999988888777777776644 33322 21111000000 00000 00 Q ss_pred HHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHH------------- Q lcl|Aclame:pro 233 SFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQI------------- 299 (392) Q Consensus 233 ~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~------------- 299 (392) .+..... -.+++..++.++....+-++.+..+...++|+...|+++..+|...++..+..+. T Consensus 318 ~~~~~~~-----~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~g~~TAtei~s~~~~~~~t~~~ 392 (500) T protein:vir:30 318 VYIRMGG-----RDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFDGKSMKTATEIVSENSDTYQMRNS 392 (500) T ss_pred eEEEcCC-----CCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccCcCccccHHHHHHHHHHHHHHHHH Confidence 0100000 0123446788888888889999999999999999999999998654433222221 Q ss_pred -HHHHHHHHHHHHHHHHHHHHH-Hhh-------hhhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCC Q lcl|Aclame:pro 300 -SGMYASALNRYLRPAISELEY-KLS-------DHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIP 370 (392) Q Consensus 300 -~~~~~~~l~p~l~~i~~~l~~-~l~-------~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~ 370 (392) +..++.+|..+++.|.+-... .+. ..+.+++..-+..|.++....+.+++.+|+++.-+++..+ .|+.. T Consensus 393 ~~~~~~~al~~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~aGi~s~~~~i~~~--~g~~e 470 (500) T protein:vir:30 393 IVALVEQSLKELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELDYWIKVVNAGFGTREMAIQKV--LNVTE 470 (500) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHhc--CCCCH Confidence 112222222222222211110 010 1233444444456677778888999999999999887543 45554 Q ss_pred cccccc-cCCCCCCCCCCCCCCC Q lcl|Aclame:pro 371 KDLPAP-ENTNKKTTGQSNEPVP 392 (392) Q Consensus 371 ~e~~~~-~~~~~~~~gd~~~p~p 392 (392) .+..+. +........+.+++-| T Consensus 471 eea~~~l~~i~~E~~~~~~~~~~ 493 (500) T protein:vir:30 471 EKAQEIAAEINTGIVDEINQQRT 493 (500) T ss_pred HHHHHHHHHHHHhccccCCCCCc Confidence 432111 0000000011111112 No 165 >protein:vir:9815 Length: 500 # NCBI annotation: putative minor capsid protein # Family: family:all:898 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795577;genbank:gi:28876344;genbank:GeneID:1257866 Probab=98.14 E-value=3.7e-06 Score=50.36 Aligned_cols=380 Identities=8% Similarity=0.044 Sum_probs=166.0 Q ss_pred chhhh----hhccccccccccc-------ccccccCcchhhh---hhhccCCCC-c---cc----chhhhhcchHHHHHH Q lcl|Aclame:pro 3 LPILN----FINQTNDPPEAGS-------VQSYFPDGNDAQI---MESLLGDNN-E---WV----SARAALRNSDLFSII 60 (392) Q Consensus 3 Mg~~n----~~~~~~~~~~~~~-------~~~~~~~~~~~~~---~~~~~~~~~-~---~~----~~~~al~~~~v~~~i 60 (392) ||+|+ ||++....-.... ..-..++.....+ ..++.+... . .. ..+..........++ T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~slnl~~~i~ 80 (500) T protein:vir:98 1 MGVIQKIKNLVTRSKYVMTTQSLTNITDHPKIAISKLEYDRITTNLKYYKSDWDSVLYLNTDGETKKRDLNHLPIARTAA 80 (500) T ss_pred CchHHHHHHHHHHHHHHhhcchhhhhhccccccCCHHHHHHHHHHHHHhcCCCCCcccccCCCCcccCceeecchHHHHH Confidence 88875 5544211100011 1111111111111 122221110 0 00 011122333344555 Q ss_pred HHHHHhhhhCcee--eecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecC Q lcl|Aclame:pro 61 LQLSSDLAIVKIN--AEKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFE 138 (392) Q Consensus 61 ~~ia~~ia~lp~~--~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~ 138 (392) +.+|+-+..=|.. +-+......+.+=-..-....-.+..+...+..|.+++.+..+. |.+ .+..++|..+-+.... T Consensus 81 ~~~A~lv~~e~~~i~~~d~~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~-~~~-~I~~v~ad~~~P~~~d 158 (500) T protein:vir:98 81 KKIASLVFNEQAEIKVDDDAANEFISETLKNDRFNKNFERYLESCLALGGLAMRPYVDG-DKV-RVAFVQAPVFLPLQSN 158 (500) T ss_pred HHHhhhhcCCcceEecCChHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCEEEEEEEeC-Cce-EEEEEcCCeeEEEEEc Confidence 6666655443432 22222222222211111223334455556666787877766553 333 3566777766553222 Q ss_pred CCce-----------------EEE----EEEecCCc----------------ceeeEE----------------EecceE Q lcl|Aclame:pro 139 YENG-----------------MYY----NITFDDPK----------------IEPILQ----------------APQSDL 165 (392) Q Consensus 139 ~~~~-----------------~~~----~~~~~~~~----------------~~~~~~----------------~~~~~v 165 (392) .++. .+| ++.+.++. .|..+. ++.--+ T Consensus 159 ~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~~~~~p~f 238 (500) T protein:vir:98 159 TQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEVYKDLKDEAKVTDVTRPIF 238 (500) T ss_pred CCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccccccCCcCcceEeccCCCccE Confidence 1111 110 00000000 000000 000112 Q ss_pred EEecCCCc----cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEE-----eeCCCCCchHH-HHHHH---HH Q lcl|Aclame:pro 166 IHMKLLSI----DGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVL-----TVKGGGLLSDK-DKASR---SR 232 (392) Q Consensus 166 ih~~~~~~----~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~-----~~~~~~~~~~~-~~~~~---~~ 232 (392) .|++.+.. .+...|.|.+..+...++..+.......+-++.|- ...++ ..+......+. ....+ .+ T Consensus 239 ~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~-~~i~v~~~~l~~~~~~~~g~~~~~~~~d~~~~ 317 (500) T protein:vir:98 239 TYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQ-RRVAVPESLTALTVRTTDGDVVPRPRFESDQN 317 (500) T ss_pred EEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCc-ceeeechHHhcccCCCCCccccCCcccCCCcc Confidence 34443211 12346999999999999988888777777776644 33322 21111000000 00000 00 Q ss_pred HHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHH------------- Q lcl|Aclame:pro 233 SFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQI------------- 299 (392) Q Consensus 233 ~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~------------- 299 (392) .+..... -.+++..++.++....+-++.+..+...++|+...|+++..+|...++..+..+. T Consensus 318 ~~~~~~~-----~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~g~~TAtei~s~~~~~~~t~~~ 392 (500) T protein:vir:98 318 VYIRMGG-----RDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFDGKSMKTATEIVSENSDTYQMRNS 392 (500) T ss_pred eEEEcCC-----CCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccCcCccccHHHHHHHHHHHHHHHHH Confidence 0100000 0123446788888888889999999999999999999999998654433222221 Q ss_pred -HHHHHHHHHHHHHHHHHHHHH-Hhh-------hhhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCC Q lcl|Aclame:pro 300 -SGMYASALNRYLRPAISELEY-KLS-------DHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIP 370 (392) Q Consensus 300 -~~~~~~~l~p~l~~i~~~l~~-~l~-------~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~ 370 (392) +..++.+|..+++.|.+-... .+. ..+.+++..-+..|.++....+.+++.+|+++.-+++..+ .|+.. T Consensus 393 ~~~~~~~al~~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~aGi~s~~~~i~~~--~g~~e 470 (500) T protein:vir:98 393 IVALVEQSLKELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELDYWIKVVNAGFGTREMAIQKV--LNVTE 470 (500) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHhc--CCCCH Confidence 112222222222222211110 010 1233444444456677778888999999999999887543 45554 Q ss_pred cccccc-cCCCCCCCCCCCCCCC Q lcl|Aclame:pro 371 KDLPAP-ENTNKKTTGQSNEPVP 392 (392) Q Consensus 371 ~e~~~~-~~~~~~~~gd~~~p~p 392 (392) .+..+. +........+.+++-| T Consensus 471 eea~~~l~~i~~E~~~~~~~~~~ 493 (500) T protein:vir:98 471 EKAQEIAAEINTGIVDEINQQRT 493 (500) T ss_pred HHHHHHHHHHHHhccccCCCCCc Confidence 432111 0000000011111112 No 166 >protein:vir:38 Length: 496 # NCBI annotation: putative portal protein # Family: family:all:898 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463464;swissprot:trembl:q9t1c0;genbank:gi:16798786;uniprot:Q9T1C0;genbank:GeneID:922383 Probab=98.13 E-value=3.9e-06 Score=50.21 Aligned_cols=377 Identities=11% Similarity=0.010 Sum_probs=170.7 Q ss_pred Ccchhhhhhcccccc----ccccc----ccccccCcchhhhhh---hccCCC-----------CcccchhhhhcchHHHH Q lcl|Aclame:pro 1 MILPILNFINQTNDP----PEAGS----VQSYFPDGNDAQIME---SLLGDN-----------NEWVSARAALRNSDLFS 58 (392) Q Consensus 1 m~Mg~~n~~~~~~~~----~~~~~----~~~~~~~~~~~~~~~---~~~~~~-----------~~~~~~~~al~~~~v~~ 58 (392) |.=+|+.+|+.-... ..-.. .....++.....+.. .+.+.. +.... ...+...-... T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~yy~g~~~~~~~~~~~~~~~~~~-~~~~~~n~~k~ 79 (496) T protein:vir:38 1 MINQIIAGVKGVMRRMGLLKALKDVKDHKKVNANDEDYKYIDMWKRLYQGHYAEWHNLNYEHNGNPVN-RRQLSMNLPKV 79 (496) T ss_pred ChhHHHHHHHHHHHHhccchhhHHHHhcCCCcCCHHHHHHHHHHHHHhcCCCchhhcchhccCCCccc-cceeecchHHH Confidence 777777554332111 00000 000011111111111 111100 00000 11122344556 Q ss_pred HHHHHHHhhhhCceeee--cchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeee Q lcl|Aclame:pro 59 IILQLSSDLAIVKINAE--KKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYY 136 (392) Q Consensus 59 ~i~~ia~~ia~lp~~~~--~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~ 136 (392) +++..|+-+..=|+.+. +......+.+=...-....-.+.++.+...+|.+|+.+..+.+|.+. +..++|.++-+.. T Consensus 80 i~~~~a~~l~~~p~~i~~~d~~~~e~l~~~~~~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~~-i~~v~~~~~~P~~ 158 (496) T protein:vir:38 80 TAKYMSKLLFNEKVKINIDDKAAEEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHDGNKNVK-VSFATADCMYPLS 158 (496) T ss_pred HHHHHhhhhhCCcceEeeCChHHHHHHHHHHhccCHHHHHHHHHHHHhhhCcEEEEEEEcCCCcEE-EEEEcccceEEEE Confidence 67777777766565543 22222222221112234444566777888999999999988887754 6777777776644 Q ss_pred cCCCceE---EEE-----------E---E------------ec---CCcceeeEE-------------E---ecceEEEe Q lcl|Aclame:pro 137 FEYENGM---YYN-----------I---T------------FD---DPKIEPILQ-------------A---PQSDLIHM 168 (392) Q Consensus 137 ~~~~~~~---~~~-----------~---~------------~~---~~~~~~~~~-------------~---~~~~vih~ 168 (392) ...+... +.. . . +. ....+..+. + +.--+.|+ T Consensus 159 ~~~~~~~~~~f~~~~~~~~~~y~~le~h~~~~~~~~I~~~~y~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~f~~~ 238 (496) T protein:vir:38 159 NDSENVDECVIANSFHKNNKYYTLLEWNEWQGDVYTVTTELYQSDDPNELGTKVSLTLLFDDIEPVVPLPDFTRPTFIYI 238 (496) T ss_pred ecCCcEEEEEEEEEEEeCCeEEEEEEEEEEeCceEEEEEEEEecCCccccCccccccccccccccceeecCCCcceEEEe Confidence 4333221 100 0 0 00 000000000 0 11112333 Q ss_pred cCCC----ccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEe-----eCCCCCchHHHHHHHHHHHhcccc Q lcl|Aclame:pro 169 KLLS----IDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLT-----VKGGGLLSDKDKASRSRSFMKRSR 239 (392) Q Consensus 169 ~~~~----~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 239 (392) +.+- ......|.|.+..+...++..+.+.....+-++. +++..++. ...... .+. .. .+..... T Consensus 239 ~~~~~N~~~~~~p~G~Sd~~~~~~lid~ld~~~s~~~~~~~~-~~~~i~v~~~~l~~~~~~~-g~~-~~----~~~~~~~ 311 (496) T protein:vir:38 239 KPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKL-GKKKVLVPSSFVKTAVNLD-GST-TQ----YFDSTDE 311 (496) T ss_pred cCCcccccccCCcCCCchHhhHHHHHHHHHHHHHHHHHHHhh-cccceecchHHhhccCCCC-Ccc-cc----CCCCccc Confidence 3221 2233469999999999888887776666666665 34443331 100000 000 00 0000000 Q ss_pred ---CCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHH--------------H Q lcl|Aclame:pro 240 ---SGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISG--------------M 302 (392) Q Consensus 240 ---~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~--------------~ 302 (392) .....-.+++..++.++.....-++.+..+...++|+...|+|+..+|...++..+..+... . T Consensus 312 ~~~~~~~~~~~~~~~i~~~~~~i~~e~~~~~l~~~l~~i~~~~g~~~~~f~~~~~g~~tAtei~~~~~~l~~~~~~~~~~ 391 (496) T protein:vir:38 312 AFFLYQGDQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVVSEKSETYQTKNSHSQL 391 (496) T ss_pred eEEEeecCCCcccccceeeccccCHHHHHHHHHHHHHHHHHhhCCChhhcCCCccccchHHHHHHHHHHHHHHHHHHHHH Confidence 00011113344677777776677788999999999999999999999865443332222211 1 Q ss_pred HHHHHHHHHHHHHHHHHHHh-h-------hhhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcccc Q lcl|Aclame:pro 303 YASALNRYLRPAISELEYKL-S-------DHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLP 374 (392) Q Consensus 303 ~~~~l~p~l~~i~~~l~~~l-~-------~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~ 374 (392) ++..|..+++.+.+-.+... . ..+.+.+..-+..|..+.+..+.+++.+|+++.-.+++.+ .|+...+.. T Consensus 392 ~~~~l~~l~~~il~~~~~~~~~~g~~~~~~~i~v~f~d~i~~d~~~~~~~~~~~~~~GiiS~et~l~~~--~~~~d~ea~ 469 (496) T protein:vir:38 392 IEQGIKEMIVSILEVGKFIEAYSGEVVELDTITVDFDDSIAQDEDTTINRYTNAKNQGMIPLKIALQRA--WNITEAEAD 469 (496) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHhc--CCCChHHHH Confidence 22223333222222111100 0 0122222233344567777888888899999987765432 233322221 Q ss_pred ----cc--cCCCCC-------CCCCCC Q lcl|Aclame:pro 375 ----AP--ENTNKK-------TTGQSN 388 (392) Q Consensus 375 ----~~--~~~~~~-------~~gd~~ 388 (392) +. |.-... .+|+.+ T Consensus 470 ~el~ri~~E~~~~~~~~d~~~~~~~~e 496 (496) T protein:vir:38 470 EWAEMLAKEKQAEMPNNDMNGIFGEEE 496 (496) T ss_pred HHHHHHHHhhhccCccccccCCCCCCC Confidence 11 110011 122222 No 167 >protein:vir:79703 Length: 505 # NCBI annotation: minor structural protein gp61 # Family: family:all:898 # MgeID: mge:1873 # MgeName: LL-H # Cross-refs: genbank:acc:YP_001285880;genbank:gi:148750838;genbank:GeneID:5220405 Probab=98.07 E-value=5.3e-06 Score=49.51 Aligned_cols=373 Identities=9% Similarity=0.066 Sum_probs=166.7 Q ss_pred chhhh----hhccccccc-cccccc-------ccccCcchhhh---hhhccCCCCcccch---------hhhhcchHHHH Q lcl|Aclame:pro 3 LPILN----FINQTNDPP-EAGSVQ-------SYFPDGNDAQI---MESLLGDNNEWVSA---------RAALRNSDLFS 58 (392) Q Consensus 3 Mg~~n----~~~~~~~~~-~~~~~~-------~~~~~~~~~~~---~~~~~~~~~~~~~~---------~~al~~~~v~~ 58 (392) ||+|+ +|++..... ...... -..+......+ ..++.+.. ..+.. +.......... T Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~i~~~~~~Y~g~~-~~l~~~~~~~~~~~~~~~slnl~~~ 79 (505) T protein:vir:79 1 MAFWDTLKNLFRKGSAAVGMTKSLGQIIDDPRINLPADEVERIARDKRYYMDDF-KQVTHKNSYGDTQKHELQSVNVTKL 79 (505) T ss_pred CchHHHHHHHHHHhhhhhcchhhhhhhhcccCCCCCHHHHHHHHHHHHHhcCCC-ccccccccCCCccccceeecchHHH Confidence 88885 444422110 001111 11111111111 12221111 11111 11122233445 Q ss_pred HHHHHHHhhhhCceee--ecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeee Q lcl|Aclame:pro 59 IILQLSSDLAIVKINA--EKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYY 136 (392) Q Consensus 59 ~i~~ia~~ia~lp~~~--~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~ 136 (392) +++.+|+-+..=|..+ -+......+.+=...-....-.+..+.+.+..|.+++.+..+ .|. +.+..++|..+-+.. T Consensus 80 i~~~~A~ll~~e~~~i~~~d~~~~e~l~~i~~~n~f~~~~~~~~e~a~a~G~~~~k~~~D-~~~-~~i~~v~ad~~~P~~ 157 (505) T protein:vir:79 80 ASAKLASLIFNEQCQVTVSDETANDFLDDVFQQNDFYTTFEEKLEEWIALGSGCVRPYVD-SGK-IKLAWATADQVYPLQ 157 (505) T ss_pred HHHHHHhhhcCCCceeecCChHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCeEEEEEEe-CCc-eEEEEEcCCeeEEEE Confidence 5566666554434333 222222222221111122333455566667778888777655 343 345566666655532 Q ss_pred cCCCce------------------EEE----------EEEec--------CCcceee---------------EE---Eec Q lcl|Aclame:pro 137 FEYENG------------------MYY----------NITFD--------DPKIEPI---------------LQ---APQ 162 (392) Q Consensus 137 ~~~~~~------------------~~~----------~~~~~--------~~~~~~~---------------~~---~~~ 162 (392) .+.++. +|. .+++. ....|.. +. ++. T Consensus 158 ~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~ 237 (505) T protein:vir:79 158 ADTNQVNELAIASRTTEVENHRTIYYTLLEFHQWDHGDYVITNELYRSEAAETVGINVPLNSLEQYEGLEPQVKITGLKH 237 (505) T ss_pred EcCCCeEEEEEEEEEEEecCCcceEEEEEEEEEecCceEEEEEEEEecCCCCccCcccchhhcccccccCcceeecCCCc Confidence 111110 110 00000 0000100 01 111 Q ss_pred ceEEEecCCCcc----ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceE----EeeCCCC--CchHHHH---HH Q lcl|Aclame:pro 163 SDLIHMKLLSID----GGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGV----LTVKGGG--LLSDKDK---AS 229 (392) Q Consensus 163 ~~vih~~~~~~~----~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i----~~~~~~~--~~~~~~~---~~ 229 (392) -.+.|++.+.++ +...|.|.+..+...++..+.......+-++.|-..-.+ ++..... ...+... .. T Consensus 238 p~f~~~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~~~~~~~~~~~fd~ 317 (505) T protein:vir:79 238 PLFAFYRNKGANNKNFTSPMGMSLIDNSYTVIDAINRTHDQFVDEVKKGQRRLIVPAEWLKTGSSYGGQASETHPPMFDP 317 (505) T ss_pred ceEEEecCCcccccccCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhcccceeechHHhcccCCCCcccccccccCCCc Confidence 123455543222 234699999999999998888877777777765433122 2222111 1000000 00 Q ss_pred HHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHH---HHHH Q lcl|Aclame:pro 230 RSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGM---YASA 306 (392) Q Consensus 230 ~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~---~~~~ 306 (392) ....+..... -+++..++.++....+-++.+..+...++|+...|+++..+|...++..+..+...- ...+ T Consensus 318 ~~~~y~~~~~------~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~s~~~~l~~t 391 (505) T protein:vir:79 318 DETVYQAMYG------DASEVGFHDATSPIRVADYQATMDFFLREFENQTGLSQGTFTTSPSGIQTATEVVTNNSQTYQT 391 (505) T ss_pred cceeeeeccC------CCCCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCChhhcCCCccccchHHHHHHHHhHHHHH Confidence 0011111110 022346888888888888999999999999999999999998644433222222111 1112 Q ss_pred HHHHHHHHHHHHHHHh---h---h-------------------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHH Q lcl|Aclame:pro 307 LNRYLRPAISELEYKL---S---D-------------------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATF 361 (392) Q Consensus 307 l~p~l~~i~~~l~~~l---~---~-------------------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~ 361 (392) +.-....++..|...+ + . .+.+++..-+-.|.++.......++.+|+++.-+++. T Consensus 392 ~~~~~~~~~~al~~li~~i~~~~~~~~~~~~g~~~~~~~~~~~~i~v~f~d~i~~d~~~~~~~~~~~v~~Gi~s~e~~l~ 471 (505) T protein:vir:79 392 RSSYITQVEKTIKALTYAILELASVPSFYADGQARWTGDVDSLDITINFNDGVFVDQESKRAADLQAVQAQVMPKKQFLM 471 (505) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCceeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHH Confidence 2222222222222110 0 0 1223333444456677788888999999999988765 Q ss_pred HHHhCCCCCcc----cccccC-----CCC--CCCCC Q lcl|Aclame:pro 362 VLQEAGYIPKD----LPAPEN-----TNK--KTTGQ 386 (392) Q Consensus 362 ~l~~~g~~~~e----~~~~~~-----~~~--~~~gd 386 (392) . ..|+...+ ++++.. .|. .-||| T Consensus 472 ~--~~~~~eeea~~el~ri~~E~~~~~p~~~~~gg~ 505 (505) T protein:vir:79 472 R--NYGLDEEEADEWLAQIDAENSTAEPEFNQFGGD 505 (505) T ss_pred h--cCCCChHHHHHHHHHHHHhccccCCCchhccCC Confidence 4 24554433 222211 111 12333 No 168 >protein:vir:78907 Length: 518 # NCBI annotation: gp3 # Family: family:all:4147 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468843;genbank:gi:157325445;genbank:GeneID:5601904 Probab=98.00 E-value=7.4e-06 Score=48.70 Aligned_cols=378 Identities=9% Similarity=0.015 Sum_probs=159.0 Q ss_pred chhhhh--------hcccccccccccccc---cccCc-chhhhhhhccCCCCc----ccchhhhhcchHHHHHHHHHHHh Q lcl|Aclame:pro 3 LPILNF--------INQTNDPPEAGSVQS---YFPDG-NDAQIMESLLGDNNE----WVSARAALRNSDLFSIILQLSSD 66 (392) Q Consensus 3 Mg~~n~--------~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~----~~~~~~al~~~~v~~~i~~ia~~ 66 (392) ||||.- ++.......-..+.. ...+. ............++. .+. ..-+..+-...+++.+|+- T Consensus 1 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~l~~~i~~~~A~l 79 (518) T protein:vir:78 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVH-DKLMNSGTGNEIVVVAAEY 79 (518) T ss_pred CcchhhHHHHHHHhhcCCCCccchhccHHHhhhcccchhhhhhhhhhhhhcccCCCCccc-cccccCChHHHHHHHHHHh Confidence 999853 332222110001100 00000 000000000001111 111 1122333455677777777 Q ss_pred hhhCceee--ec---chhhhhcccCCccC---CHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecC Q lcl|Aclame:pro 67 LAIVKINA--EK---KKNQGIIDNPSTNA---NKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFE 138 (392) Q Consensus 67 ia~lp~~~--~~---~~~~~~~~~PN~~~---t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~ 138 (392) |..=+..+ .. .+.......-+... ....-++..+.+.+-.|.+++.+..+ +|++ .+..+++..+-+.... T Consensus 80 l~~e~~~i~v~~~~~~d~e~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d-~~~~-~i~~v~ad~~~P~~~~ 157 (518) T protein:vir:78 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQFWIDFKN 157 (518) T ss_pred hcCCCceEEecCccccCcHHHHHHHHHHHHhccHHHHHHHHHHHhhccCceEEEEEEE-CCee-EEEEEcCCeeEEEeec Confidence 75544433 11 11111111111111 11222233444555667666655433 4553 4556666665553211 Q ss_pred C---------------CceEEEEEEe------------------------cCCcce---eeEE----------------- Q lcl|Aclame:pro 139 Y---------------ENGMYYNITF------------------------DDPKIE---PILQ----------------- 159 (392) Q Consensus 139 ~---------------~~~~~~~~~~------------------------~~~~~~---~~~~----------------- 159 (392) . .+.+|....+ ++...+ .... T Consensus 158 g~~~~~~f~~~~~~~~k~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~l~~~~~~~~~~e~ 237 (518) T protein:vir:78 158 NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLN 237 (518) T ss_pred CcEEEEEEEEEeecCCcceeEEEEEeeccccccceeecccceeEEEEEeeecCcccccccccccccccccccccccCccc Confidence 0 0111110000 000000 0000 Q ss_pred --E----ecceEEEecCCCcc----ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEe-----eCCC-CCch Q lcl|Aclame:pro 160 --A----PQSDLIHMKLLSID----GGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLT-----VKGG-GLLS 223 (392) Q Consensus 160 --~----~~~~vih~~~~~~~----~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~-----~~~~-~~~~ 223 (392) + +.--+.|++...++ +...|+|.+..+...+...+........-|+. +.+..++. .... .... T Consensus 238 ~~~~tg~~~~~~~~~~n~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~-g~~~i~v~~~~l~~~~~~~~~~ 316 (518) T protein:vir:78 238 HSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEK-TKTKIAASERMFRKKVNKSTDK 316 (518) T ss_pred eeeccCCccceEEeeccccccccccCCCcCcchHhhhhHHHHHHHHHHHHHHHHHHh-CCceeeechhHhccCCCCCCCc Confidence 0 00112333432211 23459999999999999998888777777776 44444432 1111 0000 Q ss_pred HH-HHHHHHHHHhccccCCceeeccCCc----eEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc-cchH- Q lcl|Aclame:pro 224 DK-DKASRSRSFMKRSRSGGPVVLDDLE----EFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-QSSI- 296 (392) Q Consensus 224 ~~-~~~~~~~~~~~~~~~g~~~vl~~g~----~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-~~~~- 296 (392) .. ....-.+.|.... .-.++|. .++.++....+.++.+..+...+.|....|+++..+|..+.. ++++ T Consensus 317 ~~~~fd~~~~~y~~i~-----~~~~~~~~~~~~i~~~~~~Ir~e~~~~~~~~~l~~~~~~~G~s~~tfg~~~~~~TATei 391 (518) T protein:vir:78 317 EEWSMNVDEDYFMQFK-----GTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEI 391 (518) T ss_pred cccccCCCCceEEEec-----CcCCCCCccccceeeeecccChHHHHHHHHHHHHHHHHhhCCChhhcCcccccccHHHH Confidence 00 0000000011000 0011222 377888888888999999999999999999999999753222 2211 Q ss_pred -HHHHHH------HHHHHHHHHHHHHHHHHHHhhh--------------hhccchhhhhhcChHHHHHHHHHHHhCCccC Q lcl|Aclame:pro 297 -QQISGM------YASALNRYLRPAISELEYKLSD--------------HISVNMRPAIDPLGDNYLSTISTATRWGALA 355 (392) Q Consensus 297 -~~~~~~------~~~~l~p~l~~i~~~l~~~l~~--------------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t 355 (392) ...... .+..++..++.+...+...+.- .+.+++..-+-.|..+.+..+..++.+|+++ T Consensus 392 ~s~~~~~~~t~~~~~~~~e~al~~l~~~i~~l~~~~~~~~~~~~~~~~~~v~i~f~D~i~~D~~~~~~~~~~~v~aGimS 471 (518) T protein:vir:78 392 WSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMS 471 (518) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccCCCceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCCC Confidence 111111 1122222222222222211110 1334444455567788888889999999999 Q ss_pred HHHHHHHHHhCCCCCcc----cccccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 356 ENQATFVLQEAGYIPKD----LPAPENTNKKTTGQSNEPVP 392 (392) Q Consensus 356 ~nE~R~~l~~~g~~~~e----~~~~~~~~~~~~gd~~~p~p 392 (392) +.++-+++ ..++...+ +.++.... ..++.++|-| T Consensus 472 ~e~~i~~~-~~~~~deea~~e~~ri~~E~--~~~~~~~p~~ 509 (518) T protein:vir:78 472 VEEKVKLI-HPKWEDEEIQAEVKRIYLEN--AIGEVPDPEA 509 (518) T ss_pred HHHHHHHh-CCCCCHHHHHHHHHHHHHHh--cccCCCCCcc Confidence 98865543 12333221 11111000 0011112221 No 169 >protein:vir:97900 Length: 639 # NCBI annotation: gp8 # Family: family:all:2798 # MgeID: mge:1482 # MgeName: Orion # Cross-refs: genbank:acc:YP_655104;genbank:gi:109391854;genbank:GeneID:4157263 Probab=98.00 E-value=7.5e-06 Score=48.69 Aligned_cols=386 Identities=11% Similarity=0.052 Sum_probs=193.1 Q ss_pred Ccchhhhhhcccccccccccccccc----cCcchhhhhhhccCCC---Ccccchhhhh-cchHHHHHHHHHHHhhhhCce Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYF----PDGNDAQIMESLLGDN---NEWVSARAAL-RNSDLFSIILQLSSDLAIVKI 72 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~al-~~~~v~~~i~~ia~~ia~lp~ 72 (392) |.--=+...++....+.....+.-+ +...-+..+......+ ......-.+. ..+.+.-.+..|++++|++.+ T Consensus 1 ma~~~lr~~rrpk~~p~~~rr~~ltaAsq~~~~p~~~~kt~~~~~ar~~WQ~eAW~~~d~v~Elry~vgW~~~s~sr~rL 80 (639) T protein:vir:97 1 MAATSLRVVRRPKGSAPAARRRSLTAASQLITDPQKQMKTSLMGTARNEWQSEAWDFSESIGELSYYVSWRANSCSRTTL 80 (639) T ss_pred CCccceeeeecCCCCCcchhhHHHhhhhhccCCcccchhhhccccchhhhhhhhhhhhhhhhhHHHHhhhhhhhhceeee Confidence 4444333444432222111111000 0000011111111111 0000111112 247788899999999999988 Q ss_pred eeecchhh-h--------------------hcccCCccCCHHHHHHHHHHHHHHhCCeeEEEe-cccCCc------ee-E Q lcl|Aclame:pro 73 NAEKKKNQ-G--------------------IIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRW-RNANGA------DM-K 123 (392) Q Consensus 73 ~~~~~~~~-~--------------------~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~-r~~~G~------~~-~ 123 (392) ..-+-+.+ . ...-----+...++++.+..+|.+-|++|+.++ |..++. +. + T Consensus 81 ~as~idpDtg~PtG~V~~E~d~~~~~v~~~v~~iagG~lGqa~llkr~~~~ltV~GE~wi~~l~r~~k~~~~~~~~~~~~ 160 (639) T protein:vir:97 81 IPSAIDPDTGLPTGEVDIEEDPDAQTVADYVKGIADGPLGQAALIKRAVECMTVVGEVWIAVLIRQEKDPVTGLAAPRAR 160 (639) T ss_pred EeeeeccccCCCCCccccccccCcchHHHHHHhhcCccchHHHHHHHHHhheecccceEEEEEEecCccccCcccccccc Confidence 76542211 1 011123346778899999999999999998765 344332 23 3 Q ss_pred EEEeccccceeeecCCCceEEEEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 124 WEYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISS 203 (392) Q Consensus 124 l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~ 203 (392) ++.+....+.. ..++..-...- ++..+. +.-..+-++.+=.+.+.....--||+.++...+....-+.+...+. T Consensus 161 W~vvs~~Ei~~---~~~~~~~i~lP-dG~~he--~~~~~d~l~RvW~P~prr~~e~dSpvra~l~~l~Ei~~~t~~i~aa 234 (639) T protein:vir:97 161 WYAVTREEIKS---KAGETAEISLP-DGKTHE--FNRDLDSLVRIWNPRPRKASQATSPVRACLETLREIERTTRKIKNA 234 (639) T ss_pred eeeeeHHHhcc---cCCCeeEeecC-CCCCcc--ccCCCceEEEEeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHH Confidence 44555555542 22232222111 111111 1111222333323444445577899999999998888887777776 Q ss_pred HHccCCcceEEeeCCCCC---------------------------chHHHHHHHHHHH----hccccCC--ceeecc--- Q lcl|Aclame:pro 204 LNSSLNVPGVLTVKGGGL---------------------------LSDKDKASRSRSF----MKRSRSG--GPVVLD--- 247 (392) Q Consensus 204 ~~ng~~~~~i~~~~~~~~---------------------------~~~~~~~~~~~~~----~~~~~~g--~~~vl~--- 247 (392) .+....-.|++.++...+ ..+.....+.+.. ...+.+. -++++. T Consensus 235 akSRl~gnGvlfvP~els~p~~~~p~~~~~~~~pg~~v~~~~~~~a~d~l~~~l~qaa~tai~De~S~aA~vPiia~~p~ 314 (639) T protein:vir:97 235 AKSRVMNNGVLFVPAEMSLPAAQAPIPAGQAQIPGAPVPEVSGVPASEQLATMIYQASVAAMEDENSQAAYIPLVASVAA 314 (639) T ss_pred HHHHHhhCceeeeccccCCCCccccccccccccCcccccccCCccchHHHHHHHHHHHHhhhcCCCCccceeeeeEeech Confidence 666666667766554211 1222333333222 2222222 233332 Q ss_pred -CCceEEeccCCh-hhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchH--HHHHHHHHHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 248 -DLEEFTALEIKS-NVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSI--QQISGMYASALNRYLRPAISELEYKLS 323 (392) Q Consensus 248 -~g~~~~~l~~~~-~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~--~~~~~~~~~~l~p~l~~i~~~l~~~l~ 323 (392) ..-+++.+.+.. -+.--+.+++..++++|...-|||+.|=+.++.+-+. +=...-++..|+|.+..|+++|++.++ T Consensus 315 E~l~~ikhl~f~~ei~e~aiktR~daI~RlA~glDi~pE~LLGl~d~NHWsAWqI~dedvrlHI~P~l~~icdAlT~~~L 394 (639) T protein:vir:97 315 EHLEKVQHIKFGNEVTEVEIKTRIDAITRLAMGLDVSPERLLGMSKGNHWSAWAIGDEDVQLHIKPVMDLICQAIYNDIL 394 (639) T ss_pred HHhcCeeeeeecCchhHHHHhhHHHHHHHHHhccCCchhheeecccccceEEEEecccceeeecchhHHHHHHHHHhhHH Confidence 122445555432 2333488999999999999999999774445543222 112344567899999999999999876 Q ss_pred h----hhccchhhhh---hcC----hHHHHHHHHHHHhCCccCHHHHHHHHHhC---CCCCcc---cc--------cccC Q lcl|Aclame:pro 324 D----HISVNMRPAI---DPL----GDNYLSTISTATRWGALAENQATFVLQEA---GYIPKD---LP--------APEN 378 (392) Q Consensus 324 ~----~~~~d~~~~~---~~~----~~~~~~~~~~~~~~g~~t~nE~R~~l~~~---g~~~~e---~~--------~~~~ 378 (392) + ..++|..... +.+ .-.+...+..++..|.+|-.-.|+.|+.. ||.-.. .+ .... T Consensus 395 rp~Le~eGvDp~kYvvW~DaS~Lt~dPd~~deA~qa~drGAIt~eAlR~~lG~~edd~yd~~t~e~~~~~A~~~V~~~P~ 474 (639) T protein:vir:97 395 TPLLAREGIDPTKYILWYDASGLTSDPDLSDEAVEAHDRGAITSAALRRLLNVGEDSGYDLTTLDGCREFAADVVTKNPE 474 (639) T ss_pred HHHHHHhCCCHHHhEeeecCcccccCCCCcHHHHHHHHcCCccHHHHHHHhccccccCCCCCCcHHHHHHHHHHhcCCcc Confidence 4 2344433221 111 11233556677889999999889887421 222110 00 0000 Q ss_pred ----CCCCC-CCCCC--CCCC Q lcl|Aclame:pro 379 ----TNKKT-TGQSN--EPVP 392 (392) Q Consensus 379 ----~~~~~-~gd~~--~p~p 392 (392) +.|.- .+.++ -|.| T Consensus 475 li~~~apl~~P~lq~~e~ptp 495 (639) T protein:vir:97 475 LIAMYAPLLSSQLAGIEFPQP 495 (639) T ss_pred hhhhhhhccCccceecccCCC Confidence 01111 11111 2223 No 170 >protein:vir:107517 Length: 639 # NCBI annotation: gp8 # Family: family:all:2798 # MgeID: mge:1481 # MgeName: PG1 # Cross-refs: genbank:acc:NP_943786;genbank:gi:38638411;genbank:GeneID:2657197 Probab=98.00 E-value=7.5e-06 Score=48.69 Aligned_cols=386 Identities=11% Similarity=0.052 Sum_probs=193.1 Q ss_pred Ccchhhhhhcccccccccccccccc----cCcchhhhhhhccCCC---Ccccchhhhh-cchHHHHHHHHHHHhhhhCce Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYF----PDGNDAQIMESLLGDN---NEWVSARAAL-RNSDLFSIILQLSSDLAIVKI 72 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~al-~~~~v~~~i~~ia~~ia~lp~ 72 (392) |.--=+...++....+.....+.-+ +...-+..+......+ ......-.+. ..+.+.-.+..|++++|++.+ T Consensus 1 ma~~~lr~~rrpk~~p~~~rr~~ltaAsq~~~~p~~~~kt~~~~~ar~~WQ~eAW~~~d~v~Elry~vgW~~~s~sr~rL 80 (639) T protein:vir:10 1 MAATSLRVVRRPKGSAPAARRRSLTAASQLITDPQKQMKTSLMGTARNEWQSEAWDFSESIGELSYYVSWRANSCSRTTL 80 (639) T ss_pred CCccceeeeecCCCCCcchhhHHHhhhhhccCCcccchhhhccccchhhhhhhhhhhhhhhhhHHHHhhhhhhhhceeee Confidence 4444333444432222111111000 0000011111111111 0000111112 247788899999999999988 Q ss_pred eeecchhh-h--------------------hcccCCccCCHHHHHHHHHHHHHHhCCeeEEEe-cccCCc------ee-E Q lcl|Aclame:pro 73 NAEKKKNQ-G--------------------IIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRW-RNANGA------DM-K 123 (392) Q Consensus 73 ~~~~~~~~-~--------------------~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~-r~~~G~------~~-~ 123 (392) ..-+-+.+ . ...-----+...++++.+..+|.+-|++|+.++ |..++. +. + T Consensus 81 ~as~idpDtg~PtG~V~~E~d~~~~~v~~~v~~iagG~lGqa~llkr~~~~ltV~GE~wi~~l~r~~k~~~~~~~~~~~~ 160 (639) T protein:vir:10 81 IPSAIDPDTGLPTGEVDIEEDPDAQTVADYVKGIADGPLGQAALIKRAVECMTVVGEVWIAVLIRQEKDPVTGLAAPRAR 160 (639) T ss_pred EeeeeccccCCCCCccccccccCcchHHHHHHhhcCccchHHHHHHHHHhheecccceEEEEEEecCccccCcccccccc Confidence 76542211 1 011123346778899999999999999998765 344332 23 3 Q ss_pred EEEeccccceeeecCCCceEEEEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 124 WEYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISS 203 (392) Q Consensus 124 l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~ 203 (392) ++.+....+.. ..++..-...- ++..+. +.-..+-++.+=.+.+.....--||+.++...+....-+.+...+. T Consensus 161 W~vvs~~Ei~~---~~~~~~~i~lP-dG~~he--~~~~~d~l~RvW~P~prr~~e~dSpvra~l~~l~Ei~~~t~~i~aa 234 (639) T protein:vir:10 161 WYAVTREEIKS---KAGETAEISLP-DGKTHE--FNRDLDSLVRIWNPRPRKASQATSPVRACLETLREIERTTRKIKNA 234 (639) T ss_pred eeeeeHHHhcc---cCCCeeEeecC-CCCCcc--ccCCCceEEEEeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHH Confidence 44555555542 22232222111 111111 1111222333323444445577899999999998888887777776 Q ss_pred HHccCCcceEEeeCCCCC---------------------------chHHHHHHHHHHH----hccccCC--ceeecc--- Q lcl|Aclame:pro 204 LNSSLNVPGVLTVKGGGL---------------------------LSDKDKASRSRSF----MKRSRSG--GPVVLD--- 247 (392) Q Consensus 204 ~~ng~~~~~i~~~~~~~~---------------------------~~~~~~~~~~~~~----~~~~~~g--~~~vl~--- 247 (392) .+....-.|++.++...+ ..+.....+.+.. ...+.+. -++++. T Consensus 235 akSRl~gnGvlfvP~els~p~~~~p~~~~~~~~pg~~v~~~~~~~a~d~l~~~l~qaa~tai~De~S~aA~vPiia~~p~ 314 (639) T protein:vir:10 235 AKSRVMNNGVLFVPAEMSLPAAQAPIPAGQAQIPGAPVPEVSGVPASEQLATMIYQASVAAMEDENSQAAYIPLVASVAA 314 (639) T ss_pred HHHHHhhCceeeeccccCCCCccccccccccccCcccccccCCccchHHHHHHHHHHHHhhhcCCCCccceeeeeEeech Confidence 666666667766554211 1222333333222 2222222 233332 Q ss_pred -CCceEEeccCCh-hhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchH--HHHHHHHHHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 248 -DLEEFTALEIKS-NVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSI--QQISGMYASALNRYLRPAISELEYKLS 323 (392) Q Consensus 248 -~g~~~~~l~~~~-~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~--~~~~~~~~~~l~p~l~~i~~~l~~~l~ 323 (392) ..-+++.+.+.. -+.--+.+++..++++|...-|||+.|=+.++.+-+. +=...-++..|+|.+..|+++|++.++ T Consensus 315 E~l~~ikhl~f~~ei~e~aiktR~daI~RlA~glDi~pE~LLGl~d~NHWsAWqI~dedvrlHI~P~l~~icdAlT~~~L 394 (639) T protein:vir:10 315 EHLEKVQHIKFGNEVTEVEIKTRIDAITRLAMGLDVSPERLLGMSKGNHWSAWAIGDEDVQLHIKPVMDLICQAIYNDIL 394 (639) T ss_pred HHhcCeeeeeecCchhHHHHhhHHHHHHHHHhccCCchhheeecccccceEEEEecccceeeecchhHHHHHHHHHhhHH Confidence 122445555432 2333488999999999999999999774445543222 112344567899999999999999876 Q ss_pred h----hhccchhhhh---hcC----hHHHHHHHHHHHhCCccCHHHHHHHHHhC---CCCCcc---cc--------cccC Q lcl|Aclame:pro 324 D----HISVNMRPAI---DPL----GDNYLSTISTATRWGALAENQATFVLQEA---GYIPKD---LP--------APEN 378 (392) Q Consensus 324 ~----~~~~d~~~~~---~~~----~~~~~~~~~~~~~~g~~t~nE~R~~l~~~---g~~~~e---~~--------~~~~ 378 (392) + ..++|..... +.+ .-.+...+..++..|.+|-.-.|+.|+.. ||.-.. .+ .... T Consensus 395 rp~Le~eGvDp~kYvvW~DaS~Lt~dPd~~deA~qa~drGAIt~eAlR~~lG~~edd~yd~~t~e~~~~~A~~~V~~~P~ 474 (639) T protein:vir:10 395 TPLLAREGIDPTKYILWYDASGLTSDPDLSDEAVEAHDRGAITSAALRRLLNVGEDSGYDLTTLDGCREFAADVVTKNPE 474 (639) T ss_pred HHHHHHhCCCHHHhEeeecCcccccCCCCcHHHHHHHHcCCccHHHHHHHhccccccCCCCCCcHHHHHHHHHHhcCCcc Confidence 4 2344433221 111 11233556677889999999889887421 222110 00 0000 Q ss_pred ----CCCCC-CCCCC--CCCC Q lcl|Aclame:pro 379 ----TNKKT-TGQSN--EPVP 392 (392) Q Consensus 379 ----~~~~~-~gd~~--~p~p 392 (392) +.|.- .+.++ -|.| T Consensus 475 li~~~apl~~P~lq~~e~ptp 495 (639) T protein:vir:10 475 LIAMYAPLLSSQLAGIEFPQP 495 (639) T ss_pred hhhhhhhccCccceecccCCC Confidence 01111 11111 2223 No 171 >protein:vir:2500 Length: 501 # NCBI annotation: putative portal gp5 # Family: family:all:524 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569741;genbank:gi:18496891;genbank:GeneID:932330 Probab=97.97 E-value=8.6e-06 Score=48.35 Aligned_cols=361 Identities=9% Similarity=-0.002 Sum_probs=148.4 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhh-----hhcchHHHHHHHHHHHhhhhCceeee Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARA-----ALRNSDLFSIILQLSSDLAIVKINAE 75 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----al~~~~v~~~i~~ia~~ia~lp~~~~ 75 (392) ++-.+++........- ..+..++-..... ..+ +..+.++. .+.+....-+|+.++..+---.+.+- T Consensus 31 l~~~l~~~~~~~~~rl--~~l~~YY~G~~~~---~~~----~~~~~~~~~~~~~~~v~n~~~~ivd~~a~~l~~~gf~~~ 101 (501) T protein:vir:25 31 LVADMWRLHISERQWL--DRIYEYTKGLRGR---PEV----PEGASDEVKELAKLSVKNVLSLVRDSFAQNLSVVGYRNA 101 (501) T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHhcCCCc---hhc----cccCChhhhhhHhhhhcChHHHHHHHHHhhhcccceecC Confidence 2334444332211110 0000010000000 000 00011100 00011223344444433322233333 Q ss_pred cchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecC-CCc--eEEE-EEE-e- Q lcl|Aclame:pro 76 KKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFE-YEN--GMYY-NIT-F- 149 (392) Q Consensus 76 ~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~-~~~--~~~~-~~~-~- 149 (392) +.+....+.+-...-........+..+.+.+|.||+++.++..|. .+..++|..|.+.+++ ... ..+. .+. . T Consensus 102 d~~~~~~l~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~de~~~--~i~~~sp~~~~~iy~D~~~~~~~~~ai~~~~~~ 179 (501) T protein:vir:25 102 LAKENDPAWEMWQRNRMDARQAEVHRPALTYGASYVTVTPTDEGP--VFRTRSPRQILAVYADPSVDAWPQYALETWVAQ 179 (501) T ss_pred CccchHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCCCC--eEEEeccccEEEEEecCCCCcceeEEEEEEeec Confidence 332222222222112234455667888899999999999988884 3567788888765532 221 1111 100 0 Q ss_pred -cCCcceee----------------------------------------------EEEecceEEEecCCCccccccCCCH Q lcl|Aclame:pro 150 -DDPKIEPI----------------------------------------------LQAPQSDLIHMKLLSIDGGKTGISP 182 (392) Q Consensus 150 -~~~~~~~~----------------------------------------------~~~~~~~vih~~~~~~~~~~~G~s~ 182 (392) ........ ..+..-.|+|+.+.... ...|.|- T Consensus 180 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPiv~f~N~~~~-~~~g~sd 258 (501) T protein:vir:25 180 KDAKPHRRGVLYDDTYMYELDLGEVVLGDAGGGQATQQPVNVREVTDVIEHGATFEGKPVCPVVRFVNGRDA-DDMIVGE 258 (501) T ss_pred cccCcceeEEEecCeeEEEEecCceeeeeccccccccccccccccccccccccccCCccceeeEeccCcccc-Cccccch Confidence 00000000 01122245555543222 2347776 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCcceEEe-eCCCCCchHHHHHHHHHHHhccccCCceeecc-CCceEEeccCChh Q lcl|Aclame:pro 183 LYSLRRESKIQRASDRLTISSLNSSLNVPGVLT-VKGGGLLSDKDKASRSRSFMKRSRSGGPVVLD-DLEEFTALEIKSN 260 (392) Q Consensus 183 l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~-~g~~~~~l~~~~~ 260 (392) +..+...++..+.+........+-.+.|..++. ++.. ..+ . + + ...++++.++ ++.++.++... T Consensus 259 ie~v~~l~Da~~~~~s~~~~~~e~~a~p~~~i~G~~~~--~~~-~---~-~-----~~~~~i~~~~~~~~~~~q~~~~-- 324 (501) T protein:vir:25 259 VAPLILLQQAINSVNFDRLIVSRFGANPQRVISGWTGS--KAE-V---L-K-----ASALRVWTFEDPEVKAQAFPPA-- 324 (501) T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhccHHHHHhCCCCC--ccc-h---h-h-----hcccceeccCCCCceEEEeccc-- Confidence 666655555555544443333333334432222 2111 111 1 0 0 1234566665 46777766543 Q ss_pred hHH-HHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------------- Q lcl|Aclame:pro 261 VAQ-LLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISELEYKLSD--------------- 324 (392) Q Consensus 261 d~~-~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p~l~~i~~~l~~~l~~--------------- 324 (392) +++ +.+..+....+|+..-++|++.+|+.+++. +.++++.- ...+.-.+...+..|...|-. T Consensus 325 ~~~~~~~~l~~~i~~i~~~s~~P~~~~~~~~~N~-Sg~Al~~~-~~~l~~ka~~k~~~f~~~l~~~~rl~~~~~~~~~~~ 402 (501) T protein:vir:25 325 SVEPYNLILEEMLQHVAMVAQISPAQVTGKMINV-SAEALAAA-EANQQRKLAAKRESFGESWEQLLRLAAEMDDDPDTA 402 (501) T ss_pred ChHHHHHHHHHHHHHHHhhcCCChhhhccccCCh-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc Confidence 333 788899999999999999999998754433 33333221 122233333333333322211 Q ss_pred ---hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccccccc---------------------CCC Q lcl|Aclame:pro 325 ---HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAPE---------------------NTN 380 (392) Q Consensus 325 ---~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~~---------------------~~~ 380 (392) .+++.+..-...+..+.+..+.++.+.|+ +.-.... ...|+.+.++.++. +.. T Consensus 403 ~~~~i~v~w~~~~~~s~~~~ada~~kl~~~gi-s~et~~~--~~~g~~~~~ie~~~~~~~e~~~~~~~~~~~~~~~~~~~ 479 (501) T protein:vir:25 403 ADSGAEVLWRDTEARSFGAVVDGITKLASAGI-PIEHLLS--MVPGMTQQTIQAIKDSLRGGEVKSLVDKLLSNEPAPVP 479 (501) T ss_pred cceeeeEEecCCCCCCHHHHHHHHHHHHhcCC-CHHHHHH--HcCCCCHHHHHHHHHHHHHHhHHHHHHHhhccCcCCCC Confidence 01111222222355667777777777774 2222111 12344433221110 000 Q ss_pred CCCCCCCCCCCC Q lcl|Aclame:pro 381 KKTTGQSNEPVP 392 (392) Q Consensus 381 ~~~~gd~~~p~p 392 (392) +.+++.+.++.+ T Consensus 480 ~~~~~~~~~~~~ 491 (501) T protein:vir:25 480 PPPPQAAAQALN 491 (501) T ss_pred CCCCCCCccccc Confidence 111111111111 No 172 >protein:vir:2732 Length: 501 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695105;genbank:gi:23455874;genbank:GeneID:955614 Probab=97.96 E-value=9e-06 Score=48.26 Aligned_cols=375 Identities=11% Similarity=0.051 Sum_probs=164.7 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchh- Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN- 79 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~- 79 (392) ++-.+.+..+......- .....++-.... .+... ....... .+..-+.++-..-+++..+.-+-.-|+++.-.+. T Consensus 43 ~l~~~i~~~~~~~~~r~-~~l~~yY~g~~~-~i~~~-~~~~~~~-~~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~~~d~~ 118 (501) T protein:vir:27 43 LLKNFINHHKLRQAPRI-QELLDYARGENH-DVLQF-GRRKDRE-MADKRAVHNYGRMISKFKTGYLAGNPIRVEYDDND 118 (501) T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhcCCCc-ccccc-CccCccc-cccceeccchHHHHHHHHhhhhcccCeeEecCCcc Confidence 12222111110000000 000001100000 00000 0000000 0011122344555677777666666665543211 Q ss_pred -----hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCC-c-eEEE-EE-Ee- Q lcl|Aclame:pro 80 -----QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYE-N-GMYY-NI-TF- 149 (392) Q Consensus 80 -----~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~-~-~~~~-~~-~~- 149 (392) ...+.+=...-........+..+++.+|.+|+++.++.+|++. +..++|..+.+..+... + ..+. .+ .. T Consensus 119 ~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~vy~ded~~~~-i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~ 197 (501) T protein:vir:27 119 NNSQNDDTIKRIGRINDIDSHNRTLIRDLSQTGRAYEVIYRNEYDETR-IKRLNPLETFVIYDNSLEDNSIAAVRYYNRG 197 (501) T ss_pred chHHHHHHHHHHHHhcChhHHHHHHHHHHhhCCeEEEEEEeCCCCceE-EEEEccceeEEEecCCCCCceEEEEEEEEee Confidence 1112221222245566777888999999999999999888764 67788888888776532 2 1111 11 11 Q ss_pred -cCCcceeeEEEecceE------------------------EEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 150 -DDPKIEPILQAPQSDL------------------------IHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSL 204 (392) Q Consensus 150 -~~~~~~~~~~~~~~~v------------------------ih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~ 204 (392) ..........+..+.+ ++++. ...|.|.+..+...++....+.....+.+ T Consensus 198 ~~~~~~~~~~vyt~~~v~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----n~~g~sd~e~v~~liDa~d~~~S~~~~~~ 272 (501) T protein:vir:27 198 TLQNAKDVVEIYTNEHIYTLDASDDFNEISVTTHAFGTVPITEFLN-----NVDGIGDYETELYLIDLYDSAESDTANHM 272 (501) T ss_pred ecCCcEEEEEEEeCCeEEEEEeCCceeeccccccCCCcccEEEecC-----CCCCCCchhhhHHHHHHHHHHHHHHHHHH Confidence 1111111111222222 22221 13578888888888888877776666666 Q ss_pred HccCCcceEEeeCCCCCchHHHHHHHHH-HHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccH Q lcl|Aclame:pro 205 NSSLNVPGVLTVKGGGLLSDKDKASRSR-SFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPD 283 (392) Q Consensus 205 ~ng~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~ 283 (392) +-...|-.+++-.......+. ...... ........+.....+++.+++-++....+..+....+...+.|+..-++|. T Consensus 273 ~~~~~~~~v~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~ 351 (501) T protein:vir:27 273 SDMADAILAIYGDLALPKGMQ-ASDMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDIHIFTNIPD 351 (501) T ss_pred HHhcCceeeeecCccCCcccc-hhhhhhcCceeecccccccCCCCCcceeeeeccCCHHHHHHHHHHHHHHHHHHhCCcc Confidence 666666666554222211111 111111 111111112222334555666555544444566677888889999999987 Q ss_pred HHcCCcccccchHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhh------hhhccchhhhhhcChHHHHH Q lcl|Aclame:pro 284 SYIGGQGDQQSSIQQIS--------------GMYASALNRYLRPAISELEYKLS------DHISVNMRPAIDPLGDNYLS 343 (392) Q Consensus 284 ~~lg~~~~~~~~~~~~~--------------~~~~~~l~p~l~~i~~~l~~~l~------~~~~~d~~~~~~~~~~~~~~ 343 (392) ...+..+. +.+..+++ ..+...+.-.++.+.+.++..-. ..+.+.+..-+-.+..+.+. T Consensus 352 ~~~~~~~~-n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~v~f~~~~p~n~~e~ad 430 (501) T protein:vir:27 352 MSDTNFSG-NTSGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVNEFKDFDESLLKITFTPNLPKSLNEQVS 430 (501) T ss_pred cCcccccc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccceEEeCCCCCcCHHHHHH Confidence 65543221 22222222 22233333333333332221110 01222222222234455555 Q ss_pred HHHHHHhCCccCHHHHHHHHHhCCCCCc---cc-----------------------ccccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 344 TISTATRWGALAENQATFVLQEAGYIPK---DL-----------------------PAPENTNKKTTGQSNEPVP 392 (392) Q Consensus 344 ~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~-----------------------~~~~~~~~~~~gd~~~p~p 392 (392) .+.++ .|+++..-+.+++ |+..+ |+ ....+..+-.++|+.|+++ T Consensus 431 ~~~kl--~g~iS~et~l~~l---~~v~D~~~E~eri~~E~~e~~~~~~~~~~~~~~~~~~d~~~~~~~d~~e~~~ 500 (501) T protein:vir:27 431 ILTGL--GGQVSQETALSLS---GLVESPNEELDKINKEVSEIDFKGYSNDFNEHVGKYTDEVKETHTDDFERAY 500 (501) T ss_pred HHHHH--hccCcHHHHHHhC---CCCCCHHHHHHHHHHHHHhhhHhhhcCccccccccccCCCCCCccccccccC Confidence 55555 4666654443332 22211 11 1111222345577777777 No 173 >protein:vir:4073 Length: 279 # NCBI annotation: minor structural protein # Family: family:all:11744 # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043552;genbank:gi:9628686;genbank:GeneID:1261159 Probab=97.95 E-value=9.6e-08 Score=59.05 Aligned_cols=265 Identities=12% Similarity=0.091 Sum_probs=134.8 Q ss_pred hcchHHHHHHHHHHHhhhhCceeeecchhhhhcc--------cCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCcee Q lcl|Aclame:pro 51 LRNSDLFSIILQLSSDLAIVKINAEKKKNQGIID--------NPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADM 122 (392) Q Consensus 51 l~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~--------~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~ 122 (392) |+. -..+..|.+|+--.+.+.+...+.++- --|.+.+-..=++.++.+. +.|.-.-.+... |--. T Consensus 1 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~ 73 (279) T protein:vir:40 1 MSL----FNLSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFYWA-LQGKEVYRVWYG--GFKY 73 (279) T ss_pred Ccc----cccchhhcccceeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hccceeehhhhh--hHHH Confidence 110 123344566665566666655444321 2455556655566665533 444322111110 0000 Q ss_pred EEEEeccccceeeecCCCceEEEEEEecCCcceeeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 123 KWEYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTIS 202 (392) Q Consensus 123 ~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~ 202 (392) -...+.++...+... ......+++|-.++..+.++ .+|.-+- ....-++.+ .+...+ T Consensus 74 ~~~~~~~d~fn~~vr--------------~~~~~~vtVP~~Dv~IieNP-----lv~v~~e-e~~kM~~la---~nai~~ 130 (279) T protein:vir:40 74 YAQRVNADQFNIVVR--------------EPNRREVTIRTNDYEMLLNP-----FYGANPQ-RFGVMFGMA---SNGIGR 130 (279) T ss_pred HHhhcCcchhhhhee--------------cCCcceeEeecchhhhhhcc-----hheeccc-hhhHHHHHH---Hhhhhh Confidence 001111111111110 11233456666666544432 2443322 222223322 233444 Q ss_pred HHHccCCcceEEeeCCCCC---chHHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 203 SLNSSLNVPGVLTVKGGGL---LSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVY 279 (392) Q Consensus 203 ~~~ng~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~f 279 (392) -+.+.+...++++++-+.- ..|+.+.+..+....+++-+++.+++.|-+++++..+-..+ ..+-..+.+.+.+..+ T Consensus 131 KLD~~~qIk~fIKTd~d~glee~kekaR~rIk~mlalAk~~nGityid~~ddItQL~kDYSts-lk~die~lkS~l~Sq~ 209 (279) T protein:vir:40 131 RLDSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGS-LQNDANLAIEIALSEY 209 (279) T ss_pred hhcccceeeeEEecCcchhHHHHHHHHHHHHHHHHHHHHhcCCeeeecCCceeEeeccccccc-cHHHHHHHHHHHHhhc Confidence 4588888999999875422 22344445556666677678899999999999999865544 3566777888999999 Q ss_pred cccHHHcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhccchhhhhhcChHHHHHHHHHHHhCCccCHH Q lcl|Aclame:pro 280 GLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISELEY--KLSDHISVNMRPAIDPLGDNYLSTISTATRWGALAEN 357 (392) Q Consensus 280 gVP~~~lg~~~~~~~~~~~~~~~~~~~l~p~l~~i~~~l~~--~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~n 357 (392) |||..+|-+ .++.+++.+|+..++.|++++++..|.+ .++..+ +.+-.++|.+.-- T Consensus 210 GinekIL~G----sAtE~q~iAyy~rtVePILkQyek~liY~~E~fv~y------------------~ttta~gg~~~s~ 267 (279) T protein:vir:40 210 GMPRELLYG----QSNEVTIIAFAIQKVLPLLKQHDKNIIFNQENFVAY------------------ISTTAKGGAIESK 267 (279) T ss_pred CCchhhccc----cCchhhhhhHHHhhHHHHHHHhcccccchhhhhhhh------------------heecccCcccccc Confidence 999999944 4566789999999999999998774432 222110 0000001100000 Q ss_pred -HHHHHHHhCCCC Q lcl|Aclame:pro 358 -QATFVLQEAGYI 369 (392) Q Consensus 358 -E~R~~l~~~g~~ 369 (392) -.|.- .-.|-. T Consensus 268 ~~~~~~-~~~~~~ 279 (279) T protein:vir:40 268 SSKRDS-EPVGND 279 (279) T ss_pred cccccC-CCCCCC Confidence 00000 000000 No 174 >protein:vir:78227 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491663;genbank:gi:157786487;genbank:GeneID:5625705 Probab=97.94 E-value=9.8e-06 Score=48.03 Aligned_cols=371 Identities=11% Similarity=0.063 Sum_probs=150.6 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhh---hhcchHHHHHHHHHHHhhhhCceeeecc Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARA---ALRNSDLFSIILQLSSDLAIVKINAEKK 77 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---al~~~~v~~~i~~ia~~ia~lp~~~~~~ 77 (392) ++=.|.+.+.+....- .....++ .+.. .+ ...+..+..+. -+.......+|+..+..+--..+.+-+. T Consensus 7 ~i~~L~~~~~~~~~r~--~~l~~Yy-~G~~-~i-----~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~~~~d 77 (480) T protein:vir:78 7 HVERLQGLLARDLPNL--LEAEAYR-NGTR-RL-----KTIGIGAPPELAYLDVQPGWVATYLRTLSDRLDIEGFRISED 77 (480) T ss_pred HHHHHHHHHHHHHHHH--HHHHHHH-hccc-cc-----cccccccchhHhhhhhhcchHHHHHHHHHhhhccCceecCCC Confidence 2222222221111000 0000000 0000 00 00001111100 0111123344555554432223333221 Q ss_pred -hhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEec------ccCCceeEEEEeccccceeeecCCC--ceEEE-EE Q lcl|Aclame:pro 78 -KNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWR------NANGADMKWEYLRPSQVNTYYFEYE--NGMYY-NI 147 (392) Q Consensus 78 -~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r------~~~G~~~~l~~l~~~~v~~~~~~~~--~~~~~-~~ 147 (392) +....+.+-...-........+..+.+.+|.||+++.+ +.+|.+. +.+++|..+.+..+... ...+. .+ T Consensus 78 ~~~~~~l~~i~~~N~~d~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~g~~~-i~~~~p~~~~~~~D~~~~~~~~~~i~~ 156 (480) T protein:vir:78 78 SEGLEELWNWWQANDLDEESVLGHDDSLTFGRSYITVSHPDVESGDPAGIPL-IRVESPLYMYAELDPRNTRRVTRAVRL 156 (480) T ss_pred chhHHHHHHHHHhcCHHHHHHHHHHHHhhcCceEEEEecCccccCCCCCeeE-EEEEcccceEEEEcCCCccceEEEEEE Confidence 11111111111113345667788899999999998875 3455554 67888888888776431 11111 00 Q ss_pred Ee--cC-Ccce---------------------------e--eEEEecceEEEecCCCccccccCCCHHHH-HHHHHHHHH Q lcl|Aclame:pro 148 TF--DD-PKIE---------------------------P--ILQAPQSDLIHMKLLSIDGGKTGISPLYS-LRRESKIQR 194 (392) Q Consensus 148 ~~--~~-~~~~---------------------------~--~~~~~~~~vih~~~~~~~~~~~G~s~l~~-~~~~i~~~~ 194 (392) +. ++ +... . ...+..-.|+||.+....+...|.|-+.. +...++... T Consensus 157 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~n~~~~~~~~G~s~i~~~v~~l~Da~~ 236 (480) T protein:vir:78 157 YTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPVVPLTNDPRLGNRYGRSEISPELRKVTDAAS 236 (480) T ss_pred EEeecCCCceEEEEEEeCCeEEEEEecCCCccccccccccccCCCCCcceEEeecccccCCccCcccchhhHHHHHHHHH Confidence 00 00 0000 0 01123335566665544444567776653 444555444 Q ss_pred HHHHHHHHHHHccCCcceEEee-CCCCCchHHHHHHHHHHHhccccCCceeecc-CCceEEeccCChhhHHHHHHHHHHH Q lcl|Aclame:pro 195 ASDRLTISSLNSSLNVPGVLTV-KGGGLLSDKDKASRSRSFMKRSRSGGPVVLD-DLEEFTALEIKSNVAQLLSQTDWTS 272 (392) Q Consensus 195 ~~~~~~~~~~~ng~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~-~g~~~~~l~~~~~d~~~~e~~~~~~ 272 (392) .+........+-.+.|..++.- +......+. ........ .+.++.++ ++.++.++....-+ .+++..+..+ T Consensus 237 ~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~i 309 (480) T protein:vir:78 237 RTLMNLQSASQILGTPLRVISGVTTDELTNDG-ENTTLDIY-----YGRILTLASEAAKISEFKAAELR-NFAEEMEVFR 309 (480) T ss_pred HHHHHHHHHHHhhcchhhhhhcCCcccccccc-ccchhhhh-----hhhhccCCCCCceEEecCccCHH-HHHHHHHHHH Confidence 4433333333433445444431 111111110 00111111 12334443 45678777754322 2678888888 Q ss_pred HHHHHHhcccHHHcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------h------------hccchhhhh Q lcl|Aclame:pro 273 KQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISELEYKLSD------H------------ISVNMRPAI 334 (392) Q Consensus 273 ~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p~l~~i~~~l~~~l~~------~------------~~~d~~~~~ 334 (392) .+|+..=++|+..+|+.+.+.++..+.+..+ ..+.--+...+..+...|-. . +.+.+..-. T Consensus 310 ~~~~~~~~~p~~~~g~~~~n~~Sg~Alk~~~-~~l~~ka~~~~~~f~~~l~~~~~l~~~~~g~~~~~~~~~i~v~f~~~~ 388 (480) T protein:vir:78 310 KEAASITGLPPQYLSSSSENPASAEAIIATD-SRIVKMAERKGRIFGGAWERAMRIAMQIMGREVTEEYTRLETVWRDPS 388 (480) T ss_pred HHHhcccCCChHHhccccCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceeeeEEecCCC Confidence 9999999999999987544333444443322 22222223333322222211 0 111111111 Q ss_pred hcChHHHHHHHHHHHhCC--ccCHHHHHHHHHhCCCCCcccccccC------------CCC--------CCCCC------ Q lcl|Aclame:pro 335 DPLGDNYLSTISTATRWG--ALAENQATFVLQEAGYIPKDLPAPEN------------TNK--------KTTGQ------ 386 (392) Q Consensus 335 ~~~~~~~~~~~~~~~~~g--~~t~nE~R~~l~~~g~~~~e~~~~~~------------~~~--------~~~gd------ 386 (392) ..+..+.+..+.+++++| +++..-+++. .|+.++++.+++. +.. .+.++ T Consensus 389 ~~s~~~~ad~~~kl~~~g~~~~s~et~~~~---lg~~~d~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (480) T protein:vir:78 389 TPTVAAKADAVSKLYANGQGPIPKEQARID---LGYTATQREQMRDWDKQETEDMIDTLYSTTKAQADATPKPTVTETKT 465 (480) T ss_pred CCCHHHHHHHHHHHHHhccccCCHHHHHhc---CCCCHhHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCC Confidence 234445566677777655 5555544443 3555543322110 110 11111 Q ss_pred CCCCCC Q lcl|Aclame:pro 387 SNEPVP 392 (392) Q Consensus 387 ~~~p~p 392 (392) +.+..| T Consensus 466 ~~~~~~ 471 (480) T protein:vir:78 466 ETQTSP 471 (480) T ss_pred cccccc Confidence 111222 No 175 >protein:vir:95113 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240817;genbank:gi:66394677;genbank:GeneID:5133907 Probab=97.92 E-value=1.1e-05 Score=47.82 Aligned_cols=368 Identities=10% Similarity=0.017 Sum_probs=159.3 Q ss_pred hhhhhcccccccccc--------------------------------cccccccCcchhhhhhhcc-CCCCcc---cchh Q lcl|Aclame:pro 5 ILNFINQTNDPPEAG--------------------------------SVQSYFPDGNDAQIMESLL-GDNNEW---VSAR 48 (392) Q Consensus 5 ~~n~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~ 48 (392) +||.|+.....+... ....++. +.. .+..... ...+.. ..+. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~Yy~-g~~-~i~~r~~~~~~~~~~~~~~~~ 78 (474) T protein:vir:95 1 MFNIIRMPWDKPYGEEVVEQLKPQFETQEEMIIRLIDDHRKQLDKITVGQRYYD-KDN-DIVKQMKKVDVYGNIDYDKPD 78 (474) T ss_pred CcceeecCCCCchhhHHHHhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhc-ccC-chhcccccccccccccccccc Confidence 233333322211110 0000000 000 0000000 000000 0001 Q ss_pred hhhcchHHHHHHHHHHHhhhhCceeeecchh--hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEE Q lcl|Aclame:pro 49 AALRNSDLFSIILQLSSDLAIVKINAEKKKN--QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEY 126 (392) Q Consensus 49 ~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~ 126 (392) .-+.++-...+++..+.-+-.-|+++.-.+. ...+..=.. .........+......+|.+|+++..+.+|++. +.. T Consensus 79 ~ki~~n~~~~Ivd~~~~~l~g~p~~~~~~d~~~~~~l~~~~~-n~~~~~~~e~~~~~~~~G~~~~~v~~d~~~~~~-i~~ 156 (474) T protein:vir:95 79 WRITTNFHQNLVDQKVSYVASKPVTYSCEDESVLKIIHDVLD-TRWDNKLIDILTATSNKGIDWLQVYINENGEMK-LFR 156 (474) T ss_pred ceeccchHHHHHHHHHhhhccCCceeccCchHHHHHHHHHHh-ccHHHHHHHHHHHHhhcCcEEEEEEecCCCceE-EEE Confidence 1122334455666666666566665432221 111111000 123444556778888999999999888888764 777 Q ss_pred eccccceeeecCC-CceE-EEEEEecCCcceeeEEEecceEEEecCCC------------------------------cc Q lcl|Aclame:pro 127 LRPSQVNTYYFEY-ENGM-YYNITFDDPKIEPILQAPQSDLIHMKLLS------------------------------ID 174 (392) Q Consensus 127 l~~~~v~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~vih~~~~~------------------------------~~ 174 (392) ++|..+-+..+.. .+.+ .....+..........+..+.+.++.... .. T Consensus 157 ~~p~~~~~v~d~~~~~~~~~~i~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~ 236 (474) T protein:vir:95 157 VPAEQAIPIWVDKEREELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHIQSHFSNGNWGRVPFIAFK 236 (474) T ss_pred EcccceEEEEcCCCCCceEEEEEEEEEcCeeEEEEEeCCeEEEEEEcCCccccccccCcccccccccccCCCccceEeec Confidence 8888888776543 1221 11111111111111222233332221000 00 Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeeccCCceEEe Q lcl|Aclame:pro 175 GGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTA 254 (392) Q Consensus 175 ~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~ 254 (392) +...|.|-+..+...++..+.+.....+.++..+.|-.++.--.. ...+.... ....++++.++++.+.+. T Consensus 237 nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~-~~~~~~~~--------~~~~~~~i~~~~~~~~~~ 307 (474) T protein:vir:95 237 NNPEEVSDIWMYKSLIDAIDKRLSDAQNMFDESVELIYILKGYEG-QDLEEFMR--------GLKYYKAINVDGDGGVET 307 (474) T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCc-ccchhhhh--------hhhccceeeccCCCceeE Confidence 113478888888888887777766666666666667655542211 11111111 112244666666666665 Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHH--------------HHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 255 LEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISG--------------MYASALNRYLRPAISELEY 320 (392) Q Consensus 255 l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~--------------~~~~~l~p~l~~i~~~l~~ 320 (392) ++.......+....+...+.|+..-++|..-.+..+ ++.+..+.+. .+...+...++.|.+.+.. T Consensus 308 l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~-~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~g~ 386 (474) T protein:vir:95 308 IQVEVPVSSTKEYIDLMRAYIMEFGQGVDFQTDKFG-SAPSGIALKFLYGNLDLKANKLKNKATVAIQELIGFIIDFNNL 386 (474) T ss_pred EeecCCHHHHHHHHHHHHHHHHHHhCCccccccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC Confidence 555545556677788888999999999864332211 1222222222 2222222333222222211 Q ss_pred Hhh-hhhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCc---ccccc--------cCCCCCCCCCCC Q lcl|Aclame:pro 321 KLS-DHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPK---DLPAP--------ENTNKKTTGQSN 388 (392) Q Consensus 321 ~l~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~~--------~~~~~~~~gd~~ 388 (392) +.. ..+.+.+. +..+...++.++.+.+.|+++...+.+.+ |+..+ |+..+ ...+....++.+ T Consensus 387 ~~d~~~i~v~f~---~~~p~d~~e~a~~~~~~g~iS~et~i~~l---~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~d 460 (474) T protein:vir:95 387 KMDVKDIEISFN---FNRMMNDAEQSQIIAQSQYLSRETLVKSS---PLVDDYKAELERIEQEQMEYNKQLPNLDDGGAD 460 (474) T ss_pred CcccceeeEEec---cCCCcCHHHHHHHHHhcCCCchHHHHHhC---CCCCCHHHHHHHHHHHHHHHHhcccccccccCC Confidence 110 01111111 22344455666677788999987665543 44332 11111 111112221111 Q ss_pred ------CCCC Q lcl|Aclame:pro 389 ------EPVP 392 (392) Q Consensus 389 ------~p~p 392 (392) ++.+ T Consensus 461 ~~~~~~~~~~ 470 (474) T protein:vir:95 461 GAQQQERSND 470 (474) T ss_pred CCcCCCCCcc Confidence 1111 No 176 >protein:vir:97376 Length: 320 # NCBI annotation: putative portal protein # Family: family:all:11744 # MgeID: mge:1675 # MgeName: Q54 # Cross-refs: genbank:acc:YP_762589;genbank:gi:115304290;genbank:GeneID:5130579 Probab=97.91 E-value=3e-07 Score=56.37 Aligned_cols=309 Identities=13% Similarity=0.170 Sum_probs=148.7 Q ss_pred chhhhhhcccccccccc--cccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecchhh Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAG--SVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKNQ 80 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~ 80 (392) ||||||-++....++-. .++.- +-... .++.+... +.+.+-+|..||.. +..|+.... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~--------------~~~~~~~~~~~~~~-~~~~~~~~~ 60 (320) T protein:vir:97 1 MGIFNFKKRETLTPELKESIIRQV-TIEDE----SPFTGTTD--------------FNVRNEVAESIATY-LGAYKTSAK 60 (320) T ss_pred CCccccccccccChhHHhhhhhee-eeccC----CCcccccc--------------cchhhHHHHHHHHH-hhhhccccc Confidence 99999876654433211 11100 00000 11222211 12233334444321 112333332 Q ss_pred hhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEEecCCcc---eee Q lcl|Aclame:pro 81 GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKI---EPI 157 (392) Q Consensus 81 ~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~ 157 (392) .+- -..+--.|++.++.+.+.....|+++-.. .|+.+. +.+++.-- ... ..++..++.+ ..+ T Consensus 61 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~-~~~---~~~~~~D~FN~~V~mt 125 (320) T protein:vir:97 61 RLS----LLTNNPSFLRRLVKHALHNKTTYVYKSPT-YGWLIT------DSMTIEGL-RAR---LTFTLPDPFNSAVTMT 125 (320) T ss_pred eee----eeeCCHHHHHHHHHHhhcccceEEeeCCc-cceeee------cceeeeee-eee---EEEecCcccceeEEEE Confidence 221 11122368999999999888889887532 343221 12222100 000 0111111111 112 Q ss_pred EEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCC---CchHHHHHHHHHHH Q lcl|Aclame:pro 158 LQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGG---LLSDKDKASRSRSF 234 (392) Q Consensus 158 ~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~---~~~~~~~~~~~~~~ 234 (392) .++.+.+| .++..+|..+-.+..+. + .+.....+-+.|-+....+++.+-+. +-.|+......+.. T Consensus 126 vpfyD~~I-------Ldnpl~gv~tqe~gkM~-g---~a~~~v~kkL~~~~~IKafi~Tdid~GLee~kD~~~~kIk~mq 194 (320) T protein:vir:97 126 VPFYDVGI-------IDSPLVEVDTEEANKML-E---AAYSAVMKKLHNTGAIKAFISSDIDVGLEKMKEESDSKIKAML 194 (320) T ss_pred eeeechhh-------hhhhhcccChHHhhHHH-H---HHhhhhhhhccccceeEEEEecccchhHHHHHHHHHHHHHHHH Confidence 23333333 34456777666443332 2 23344566778888899999987652 22233333333333 Q ss_pred hccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 235 MKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPA 314 (392) Q Consensus 235 ~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p~l~~i 314 (392) .-+.--.+.-+++.|-+++++.....-+. ..-....++..+.-|+||..+|-++ ++..+.-+|+..++.|+|.++ T Consensus 195 ~~A~~~nG~T~i~~~dDI~Qi~pDYS~sn-~~D~~l~~t~alS~y~m~~~IL~Gs----Ate~~~Iaf~~~~V~PLL~Q~ 269 (320) T protein:vir:97 195 ATAELLSGYTYIQRGDDVTQMMPDYTTSN-VTDFAAMRTFAASQLSVSDKILDGS----ATDGEKVAVMFRFVEPILEQF 269 (320) T ss_pred HHHHHhcCcccccCCcceeeecccccccc-hhHHHHHHHHHHhhcCCchhhcccc----CCcceeeehhhHhHHHHHHHh Confidence 33332335778888989999886543332 2333445567788899999999553 344567789999999999996 Q ss_pred ---HHHHHHHhhhhhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcccccccCCCCCCCCCCCCC Q lcl|Aclame:pro 315 ---ISELEYKLSDHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAPENTNKKTTGQSNEP 390 (392) Q Consensus 315 ---~~~l~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~~~~~~~~~gd~~~p 390 (392) +-.|.+++... +.++-+..+|.+.-|.+ .||-....| +...|||-+.- T Consensus 270 ~~~Ek~Lvy~m~~E-----------------~FVs~mtTGG~l~S~~~------~~~~~~~~~-----~~~~~~~~~~~ 320 (320) T protein:vir:97 270 REYEPSLIYAMRDE-----------------FFVSFMTTGGMLNSNRV------DGWGKEKAP-----NESKGGDVGDV 320 (320) T ss_pred hhcCcceeeeeccc-----------------eeeeeeecCceeecccc------cccccccCC-----ccccCCcccCC Confidence 44454444221 11122222666655533 233221111 11233333332 No 177 >protein:vir:96494 Length: 501 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238488;genbank:gi:66391764;genbank:GeneID:5176916 Probab=97.90 E-value=1.2e-05 Score=47.53 Aligned_cols=375 Identities=12% Similarity=0.061 Sum_probs=161.5 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhc-cCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecch- Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESL-LGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKK- 78 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~- 78 (392) ++..+.+..+....+. -.....++-... ..+...- ..... .+..-+..+....+|+..+.-+-.-|+++.-.+ T Consensus 43 ~i~~~i~~~~~~~~~r-~~~~~~yY~g~~-~~i~~~~~~~~~~---~~~~ri~~n~~k~Ivd~~~~yl~g~p~~~~~~~~ 117 (501) T protein:vir:96 43 LLKNFINHHKLRQAPR-IQELLDYARGEN-HDVLKSGRRKDNE---MADKRAVHNYGRMISKFKTGYLAGNPIRVEYDDN 117 (501) T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhcCCC-CcccCccccCccc---cccceeecchHHHHHHHHhhhhcccCeeEeeCCc Confidence 2233222111110000 000001110000 0000000 00000 001112344455667776666655666653221 Q ss_pred -----hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCC-c-eEEE--EEEe Q lcl|Aclame:pro 79 -----NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYE-N-GMYY--NITF 149 (392) Q Consensus 79 -----~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~-~-~~~~--~~~~ 149 (392) ....+.+....-........+..+++.+|.+|+++.++.+|.+. +..++|..+.+..+... + .... ++.. T Consensus 118 ~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~dedg~~~-i~~~~p~~~~~v~d~~~~~~~~~~v~~~~~ 196 (501) T protein:vir:96 118 DDNSQNDDAIKRIGRINDLDSLNRTLIRDLSQTGRAYEVIYRSEYDETR-IKRLSPLETFVIYDNSLEDNSIAAVRYYNR 196 (501) T ss_pred cchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCeEEEEEEEcCCCceE-EEEEccceeEEEEcCCCCCceEEEEEEEEe Confidence 12223334434455667788888999999999999999888764 67788998888876532 2 2211 1111 Q ss_pred cC--CcceeeEEEecce------------------------EEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 150 DD--PKIEPILQAPQSD------------------------LIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISS 203 (392) Q Consensus 150 ~~--~~~~~~~~~~~~~------------------------vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~ 203 (392) .. +.......+.++. |++++. ...|.|.+..+...++....+.....+. T Consensus 197 ~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----n~~g~sd~e~v~~liDa~d~~~s~~~~~ 271 (501) T protein:vir:96 197 GTLQSAKDVVEIYTDEHIYTLDASDDFNEISVTTHAFGTVPITEYLN-----NIDGIGDYETELYLIDLYDSAESDTANH 271 (501) T ss_pred ecCCCcEEEEEEEcCCcEEEEeeCCCceeccccccCCCccceEEecC-----CccCCCchhhhHHHHHHHHHHHHHHHHH Confidence 11 1100111122222 233322 1257888888888888777777666777 Q ss_pred HHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccH Q lcl|Aclame:pro 204 LNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPD 283 (392) Q Consensus 204 ~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~ 283 (392) ++..+.|-.++.-.......+................+.....+.+.+++-++....+..+....+...+.|+..-++|. T Consensus 272 ~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~ 351 (501) T protein:vir:96 272 MSDMADAILAIYGDLALPKGMQASDMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDIHIFTNTPD 351 (501) T ss_pred HHHhcCceeeeecccccCcccchhhhhhcCeeeecccccccccccCcceeeEeccCCHHHHHHHHHHHHHHHHHHhCCcc Confidence 77767776666543222211111111111111111111112223444554444444444556777778888988889987 Q ss_pred HHcCCcccccchHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhh------hhhccchhhhhhcChHHHHH Q lcl|Aclame:pro 284 SYIGGQGDQQSSIQQISG--------------MYASALNRYLRPAISELEYKLS------DHISVNMRPAIDPLGDNYLS 343 (392) Q Consensus 284 ~~lg~~~~~~~~~~~~~~--------------~~~~~l~p~l~~i~~~l~~~l~------~~~~~d~~~~~~~~~~~~~~ 343 (392) .-.+..+. +.+..+++. .+...+.-.++.+...+...-. ..+++.+..-+..+..+.+. T Consensus 352 ~~~~~~~~-n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~n~~e~ad 430 (501) T protein:vir:96 352 MSDTNFSG-NTSGEALKYKLFGLDQDRVDTQSQFTKGLKRRYRLAARIGSLVNEFKDFDESLLKITFTPNLPKSLNEQVS 430 (501) T ss_pred cCcccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccceEEeCCCCCcCHHHHHH Confidence 66553322 222222221 2222222222222222221100 01222222223335556666 Q ss_pred HHHHHHhCCccCHHHHHHHHHhCCCCCc---ccccc-------------cCCCCCC---CCCCCCCCC Q lcl|Aclame:pro 344 TISTATRWGALAENQATFVLQEAGYIPK---DLPAP-------------ENTNKKT---TGQSNEPVP 392 (392) Q Consensus 344 ~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~~-------------~~~~~~~---~gd~~~p~p 392 (392) .+.++ .|+++..-+.+++ |+..+ |+-.+ ..+.+.. ..+..+.-+ T Consensus 431 ~~~kl--~g~iS~et~~~~l---~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 493 (501) T protein:vir:96 431 ILTGL--GGQVSQETALSLS---GLVESPNEELDKINKEMSEIDFKGYSNDFNEHVGKYTDEVKETHT 493 (501) T ss_pred HHHHH--hccCchHHHHHhC---CCCCCHHHHHHHHHHHHHHhhccccccchhhcccccCCcCCCCCC Confidence 66666 4677765444432 33221 11111 0011110 111111111 No 178 >protein:vir:4898 Length: 502 # NCBI annotation: gp502 # Family: family:all:125 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056676;genbank:gi:9635011;genbank:GeneID:1262662 Probab=97.88 E-value=1.3e-05 Score=47.41 Aligned_cols=379 Identities=13% Similarity=0.061 Sum_probs=167.1 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhc-cCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecch- Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESL-LGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKK- 78 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~- 78 (392) ++..+.+..+....+. -.....++-... ..+.... ...... +..-+.+.-....++..+.-+-.-|+++.-.+ T Consensus 44 ~i~~~i~~h~~~~~~r-l~~l~~yY~g~~-~~i~~~~~~~~~~~---~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~~~d~ 118 (502) T protein:vir:48 44 LLKNFINHHKLRQAPR-IQELLDYARGEN-HDVLKSGRRKDNEM---ADKRAVHNYGRMISKFKTGYLAGNPIRVEYDDN 118 (502) T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhcCCC-cccccccccccccc---ccceeecchHHHHHHHHhhhhcccCeeEecCCc Confidence 3333322111110000 000011110000 0000000 000000 00112233445566777776666677654321 Q ss_pred -----hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCC-c-eEEE--EEEe Q lcl|Aclame:pro 79 -----NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYE-N-GMYY--NITF 149 (392) Q Consensus 79 -----~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~-~-~~~~--~~~~ 149 (392) ....+.+....-........+..++..+|.||+++.++.+|.+. +..++|..+.+..+... + .+.. ++.. T Consensus 119 ~~~~~~~~~l~~~~~~N~~~~~~~~~~~~~~~~G~a~~~v~~dedg~~~-i~~~~p~~~~~vydd~~~~~~~~~ir~~~~ 197 (502) T protein:vir:48 119 EDNSQNDDAIKRIGRINDIDTHNRNLIRDLSQTGRAYEVIYRSEYDETR-IKRLSPLETFVIYDNSLEDNSIAAVRYYNR 197 (502) T ss_pred cchhHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCceE-EEEEcccceEEEEcCCCCCceEEEEEEEEE Confidence 11223333333355567788888999999999999999888754 67788888888776432 2 2211 1111 Q ss_pred --cCCcceeeEEEecceEEEecCCC----------c---------cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccC Q lcl|Aclame:pro 150 --DDPKIEPILQAPQSDLIHMKLLS----------I---------DGGKTGISPLYSLRRESKIQRASDRLTISSLNSSL 208 (392) Q Consensus 150 --~~~~~~~~~~~~~~~vih~~~~~----------~---------~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~ 208 (392) ..........+.++.+.++.... . .+...|.|-+..+...++....+.....+.++-.+ T Consensus 198 ~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~ 277 (502) T protein:vir:48 198 GTLQNAKDVVEIYTNQHIYTLDASDSFNEISVTPHAFGTVPITEFLNNADGIGDYETELYLIDLYDSAESDTANHMSDMA 277 (502) T ss_pred eecCCcEEEEEEEeCCeEEEEEeCCceeeccceecCCCccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhc Confidence 11111111122333333322110 0 01125888888888888888888777777777777 Q ss_pred CcceEEeeCCCCCchHHHHHHHHHH-HhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcC Q lcl|Aclame:pro 209 NVPGVLTVKGGGLLSDKDKASRSRS-FMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIG 287 (392) Q Consensus 209 ~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg 287 (392) .|-.++.-.......+. ....... .......+...-.+++.+++-++....+..+....+...+.|+..-++|....+ T Consensus 278 ~~~lv~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~~ 356 (502) T protein:vir:48 278 DAILAIYGDLALPQGMQ-ASDMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNKDIHVFTNTPDMSDN 356 (502) T ss_pred CceeeeecCcccccccc-hhhhhhcceeeccccccccccccCcceeEeeecCCHHHHHHHHHHHHHHHHHHhCCCCcCcc Confidence 77666654322222111 1111110 000000000111234455555554433444556678888899999999976554 Q ss_pred CcccccchHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhh------hhhccchhhhhhcChHHHHHHHHH Q lcl|Aclame:pro 288 GQGDQQSSIQQIS--------------GMYASALNRYLRPAISELEYKLS------DHISVNMRPAIDPLGDNYLSTIST 347 (392) Q Consensus 288 ~~~~~~~~~~~~~--------------~~~~~~l~p~l~~i~~~l~~~l~------~~~~~d~~~~~~~~~~~~~~~~~~ 347 (392) ..+. +.+..+++ ..+...+.-.++.+...+...-. ..+.+.+..-+..+..+.+..+.+ T Consensus 357 ~~~~-n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~d~~e~a~~~~k 435 (502) T protein:vir:48 357 HFSG-NASGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVNEFKDFDESRLKITFTPNLPKSLYEQVSILND 435 (502) T ss_pred cccc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccceEEeCCCCCcCHHHHHHHHHH Confidence 3222 22222322 22233333333333333221110 012222222333355566666666 Q ss_pred HHhCCccCHHHHHHHHHhCCCCCc---ccccc---------------------cCCC--CCCCCCCCCCCC Q lcl|Aclame:pro 348 ATRWGALAENQATFVLQEAGYIPK---DLPAP---------------------ENTN--KKTTGQSNEPVP 392 (392) Q Consensus 348 ~~~~g~~t~nE~R~~l~~~g~~~~---e~~~~---------------------~~~~--~~~~gd~~~p~p 392 (392) + .|+++..-+.+++ |+..+ |+-.+ ++.+ +-...++.+.+| T Consensus 436 l--~g~iS~et~l~~l---~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~d~~~e~~~~~~~~~~ 501 (502) T protein:vir:48 436 L--GGQVSQETALSLS---GLVENPTEELDKINEESSKIDFKGYPSYFYDNVGKYTDEVKETHTDDFERVY 501 (502) T ss_pred H--hccCcHHHHHHhC---CCCCCHHHHHHHHHHHHHhhhhhcccccccccccccCCCccCCCCcCcCCCC Confidence 6 4777765554443 43221 11110 0001 112233444455 No 179 >protein:vir:98883 Length: 517 # NCBI annotation: portal # Family: family:all:898 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164413;genbank:gi:56694903;genbank:GeneID:3197273 Probab=97.81 E-value=1.8e-05 Score=46.64 Aligned_cols=378 Identities=10% Similarity=0.021 Sum_probs=159.2 Q ss_pred chhh----hhhcccccccc-------cccccccccCcchhhhhhhccCCCCc--ccch---------hhhhcchHHHHHH Q lcl|Aclame:pro 3 LPIL----NFINQTNDPPE-------AGSVQSYFPDGNDAQIMESLLGDNNE--WVSA---------RAALRNSDLFSII 60 (392) Q Consensus 3 Mg~~----n~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---------~~al~~~~v~~~i 60 (392) ||+| +||++.....- .....-..+......+..+..-+.|. .+.. +..++..... T Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~w~~~Y~g~~~~~~~~~~~~~~~~~~~~sl~~~~--- 77 (517) T protein:vir:98 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRK--- 77 (517) T ss_pred CchHHHHHHHHHHHHHHhcccchhHhhcCCceecCHHHHHHHHHHHHHhcCCCcccccccccccccccceeecCcHH--- Confidence 7766 45554211100 01011111222222222111111111 1110 0111112222 Q ss_pred HHHHHhhhhC----c--eeeecchh-----------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeE Q lcl|Aclame:pro 61 LQLSSDLAIV----K--INAEKKKN-----------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMK 123 (392) Q Consensus 61 ~~ia~~ia~l----p--~~~~~~~~-----------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~ 123 (392) .||+.+|+| + +.+-+.+. ...+.+-=.........+..+...+..|.+++.+..+. |. +. T Consensus 78 -~i~~~~A~Ll~~e~~~i~v~d~~~~~~~~~~~~~~~e~l~~i~~~n~f~~~~~~~~e~a~a~G~~a~k~~~d~-~~-~~ 154 (517) T protein:vir:98 78 -LSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN-GE-IE 154 (517) T ss_pred -HHHHHhhhhhcCCcceEEecccccccccccchhHHHHHHHHHHHhccHHHHHHHHHHHHhhhCCEEEEEEEeC-Ce-eE Confidence 344444443 2 22221110 01111100011112222334445555677777665553 33 33 Q ss_pred EEEeccccceeeecCCCce------------------EEEEEE---------------e--------cCCcceee----- Q lcl|Aclame:pro 124 WEYLRPSQVNTYYFEYENG------------------MYYNIT---------------F--------DDPKIEPI----- 157 (392) Q Consensus 124 l~~l~~~~v~~~~~~~~~~------------------~~~~~~---------------~--------~~~~~~~~----- 157 (392) +..+++.++-+.....++. +|.... + .....|.. T Consensus 155 I~~v~ad~~~Pl~~~~~~v~~~ai~~~~~~~~~~~~~~Yt~lE~H~~~~~~~~~~~y~I~n~ly~s~~~~~lG~~v~L~~ 234 (517) T protein:vir:98 155 FSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEE 234 (517) T ss_pred EEEEcCCeeEEEEecCCCeEEEEEEEEEEEeecCCceEEEEEEEEecCceeccCCcEEEEEEEEecCCCccccccccccc Confidence 5556666554422111111 110000 0 00001111 Q ss_pred --------EEEe--c-ceEEEecCCCcc----ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCc Q lcl|Aclame:pro 158 --------LQAP--Q-SDLIHMKLLSID----GGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLL 222 (392) Q Consensus 158 --------~~~~--~-~~vih~~~~~~~----~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~ 222 (392) ..++ . --+.|++.+.++ +...|.|.+..+...+...+........-++.|-+ ..++ +...-. T Consensus 235 ~~e~l~~~~~~~g~~~Plf~y~~~p~~N~~~~~splG~S~~~~a~~~~d~lD~~~s~~~~e~~~g~~-~i~v--p~~~l~ 311 (517) T protein:vir:98 235 LYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQR-TVFV--SDVMLR 311 (517) T ss_pred cccCCCcceeECCCCcceEEEecCCcccccccCCCCCCchhhhhHHHHHHHHHHHHHHHHHHHhCCc-ceec--Chhhhc Confidence 1111 0 112245443222 23469999999999999888877767777776544 2222 211100 Q ss_pred --hHHHHHHHHHHHh-ccccCCceeec-cCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHH Q lcl|Aclame:pro 223 --SDKDKASRSRSFM-KRSRSGGPVVL-DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQ 298 (392) Q Consensus 223 --~~~~~~~~~~~~~-~~~~~g~~~vl-~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~ 298 (392) .+... .....+. ........+-. +++-.++.++....+-++.+..+...++|+...|+++..+|...+...+... T Consensus 312 ~~~~~~g-~~~~~~~d~~~~~y~~~~~~~~~~~i~~~~~~iR~e~~~~~~~~~L~~i~~~~Gls~~t~~~~~~~~kTATE 390 (517) T protein:vir:98 312 TVPDESG-MPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATE 390 (517) T ss_pred cccCCCC-cccCCCCCcccceeeeccCCCCCCceeeeccccchHHHHHHHHHHHHHHHHHhCCCcccccccccccccHHH Confidence 00000 0000000 00000000001 1223577788888888999999999999999999999999865443322221 Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHH------------hh-------hhhccchhhhhhcChHHHHHHHHHHHhCCccCH Q lcl|Aclame:pro 299 IS---GMYASALNRYLRPAISELEYK------------LS-------DHISVNMRPAIDPLGDNYLSTISTATRWGALAE 356 (392) Q Consensus 299 ~~---~~~~~~l~p~l~~i~~~l~~~------------l~-------~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~ 356 (392) .+ +-...++.-..+.++..|... +. ..+.+++..-+-.|.++....+..++.+|++++ T Consensus 391 i~s~~~~~~~t~~~~~~~~~~aL~~lv~~i~~l~~~~~~~~~~~~~~~~v~v~f~D~i~~D~~~~~~~~~~~v~aG~ms~ 470 (517) T protein:vir:98 391 IVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPT 470 (517) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEcCCCCCCCHHHHHHHHHHHHhcCCCCH Confidence 11 111122333333333333221 11 113445555556678888888999999999999 Q ss_pred HHHHHHHHhCCCCCccc----cccc--C--CCCCCCC-CCCCCCC Q lcl|Aclame:pro 357 NQATFVLQEAGYIPKDL----PAPE--N--TNKKTTG-QSNEPVP 392 (392) Q Consensus 357 nE~R~~l~~~g~~~~e~----~~~~--~--~~~~~~g-d~~~p~p 392 (392) -+++.++ .|+...+. ++.. + .+|.+.. ...++.| T Consensus 471 ~~~i~~~--~g~~eeeA~~e~~~i~~E~~~~~~~~~~~~~~~~~~ 513 (517) T protein:vir:98 471 VEAIQRI--FKVPKKTAEQWLEEIRKDQIELDPVTISQRAQKRMF 513 (517) T ss_pred HHHHHHh--CCCChHHHHHHHHHHHHhccccCCCCccccccCCCC Confidence 9987654 35554322 2221 1 1111110 1111222 No 180 >protein:vir:97447 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240744;genbank:gi:66396413;genbank:GeneID:5133803 Probab=97.81 E-value=1.8e-05 Score=46.62 Aligned_cols=365 Identities=10% Similarity=0.002 Sum_probs=160.9 Q ss_pred hhhhhcccccccccccccccccCc--chhhh------------------hhhccCCC-----------Ccc---cchhhh Q lcl|Aclame:pro 5 ILNFINQTNDPPEAGSVQSYFPDG--NDAQI------------------MESLLGDN-----------NEW---VSARAA 50 (392) Q Consensus 5 ~~n~~~~~~~~~~~~~~~~~~~~~--~~~~~------------------~~~~~~~~-----------~~~---~~~~~a 50 (392) +||+|+.....+.+..+-...... ..... .....+.. ... -.+..- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~k 80 (474) T protein:vir:97 1 MFNIIRMPWDKPYGEEVVEQLKPQFETQEEMIVRLIDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVHGNIDYDKPDWR 80 (474) T ss_pred CcccccccCCCchhhHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcccchhccccccccccCcce Confidence 233333322211110000000000 00000 00000000 000 000111 Q ss_pred hcchHHHHHHHHHHHhhhhCceeeecch--hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEec Q lcl|Aclame:pro 51 LRNSDLFSIILQLSSDLAIVKINAEKKK--NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLR 128 (392) Q Consensus 51 l~~~~v~~~i~~ia~~ia~lp~~~~~~~--~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~ 128 (392) +.++-....++..+.-+-.-|+++.-.+ ....+..=+. .........+..+.+.+|.+|+.+..+.+|++. +..++ T Consensus 81 i~~n~~k~Ivd~~~~~l~g~p~~~~~~d~~~~~~l~~~~~-n~~~~~~~e~~~~~~~~G~~~~~~~~d~~~~~~-i~~~~ 158 (474) T protein:vir:97 81 ITTNFHQNLVDQKVSYVASKPVTYSCEDENVLKVIHDVLD-TRWDNKLIDILTATSNKGIDWLQVYINENGEMK-LFRVP 158 (474) T ss_pred eecchHHHHHHHHHhhhhcCCceeccCcHHHHHHHHHHHh-ccHHHHHHHHHHHHhhcCceEEEEEecCCCeeE-EEEEc Confidence 2234455567777777766676653222 1222211111 123344455677888999999999998888754 67788 Q ss_pred cccceeeecCC-CceE-EEEEEecCCcceeeEEEecce-----------------------------------EEEecCC Q lcl|Aclame:pro 129 PSQVNTYYFEY-ENGM-YYNITFDDPKIEPILQAPQSD-----------------------------------LIHMKLL 171 (392) Q Consensus 129 ~~~v~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~-----------------------------------vih~~~~ 171 (392) |..+.+..+.. .+.+ +....+..........+.... |++++++ T Consensus 159 p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn 238 (474) T protein:vir:97 159 AEQAIPIWVDKEREELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHVQSHFSNGNWGRVPFIAFKNN 238 (474) T ss_pred ccceEEEEcCCCCCceEEEEEEEEecCeEEEEEEeCCeEEEEEEcCCccccccccCcCcccccccccCCCccceEEecCC Confidence 88888877643 1222 111111111111111122222 3333321 Q ss_pred CccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeeccCCce Q lcl|Aclame:pro 172 SIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEE 251 (392) Q Consensus 172 ~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~ 251 (392) ..|.|-+..+...++..+.+.....+.++..+.|-.+++--.. ...+..... ....+++.+++|.+ T Consensus 239 -----~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~~~~~lv~~g~~~-~~~~~~~~~--------~~~~~~i~~~~~~~ 304 (474) T protein:vir:97 239 -----PEEVSDIWMYKSIIDAIDKRLSDAQNMFDESVELIYILKGYEG-EDLEEFMRG--------LKYYKAINVDGDGG 304 (474) T ss_pred -----cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCc-ccchhhhhh--------hhccceeeccCCCc Confidence 2578888888888887777766666666666667665553221 111111111 11234566666655 Q ss_pred EEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHH--------------HHHHHHHHHHHHHHHH Q lcl|Aclame:pro 252 FTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISG--------------MYASALNRYLRPAISE 317 (392) Q Consensus 252 ~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~--------------~~~~~l~p~l~~i~~~ 317 (392) .+.++.......+.+..+...+.|...-++|..-.+..+ ++.+..+.+. .+...+...++.|.+. T Consensus 305 ~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~-~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~ 383 (474) T protein:vir:97 305 VETIQVEVPVSSTKEYIDLMRVYIMEFGQGVDFQTDKFG-SAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIIDF 383 (474) T ss_pred eeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 555554444445566677777888888888753332111 1222222222 2222233333322222 Q ss_pred HHHHhh-hhhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCc---cccc--------ccCCCCCCCC Q lcl|Aclame:pro 318 LEYKLS-DHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPK---DLPA--------PENTNKKTTG 385 (392) Q Consensus 318 l~~~l~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~--------~~~~~~~~~g 385 (392) +..+.. ..+.+.+. +..+...++.++.+.++|+++..-+.+++ |+..+ |+.. ....++..++ T Consensus 384 ~~~~~d~~~i~v~f~---~~~p~~~~e~a~~~~~~g~iS~et~l~~l---~~v~D~~~E~eri~~E~~~~~~~~~~~~~~ 457 (474) T protein:vir:97 384 NNLKTDVKDIEISFN---FNRMMNDAEQSQIIAQSQYLSRETLVKSS---PLVDDYKAELERIEQEQMEYNKQLPNLDDG 457 (474) T ss_pred hCCCcccceeeEEec---cCcccCHHHHHHHHHHcCCCCHHHHHHhC---CCCCCHHHHHHHHHHHHHHHHhhccccCCC Confidence 211110 11111111 22334455666677788999987666544 44332 1111 1233444444 Q ss_pred CCCCCCC Q lcl|Aclame:pro 386 QSNEPVP 392 (392) Q Consensus 386 d~~~p~p 392 (392) +++...+ T Consensus 458 ~~~~~~~ 464 (474) T protein:vir:97 458 GADGAQQ 464 (474) T ss_pred CCCCccc Confidence 4433333 No 181 >protein:vir:94498 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240672;genbank:gi:66396340;genbank:GeneID:5133762 Probab=97.81 E-value=1.8e-05 Score=46.62 Aligned_cols=365 Identities=10% Similarity=0.002 Sum_probs=160.9 Q ss_pred hhhhhcccccccccccccccccCc--chhhh------------------hhhccCCC-----------Ccc---cchhhh Q lcl|Aclame:pro 5 ILNFINQTNDPPEAGSVQSYFPDG--NDAQI------------------MESLLGDN-----------NEW---VSARAA 50 (392) Q Consensus 5 ~~n~~~~~~~~~~~~~~~~~~~~~--~~~~~------------------~~~~~~~~-----------~~~---~~~~~a 50 (392) +||+|+.....+.+..+-...... ..... .....+.. ... -.+..- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~k 80 (474) T protein:vir:94 1 MFNIIRMPWDKPYGEEVVEQLKPQFETQEEMIVRLIDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVHGNIDYDKPDWR 80 (474) T ss_pred CcccccccCCCchhhHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcccchhccccccccccCcce Confidence 233333322211110000000000 00000 00000000 000 000111 Q ss_pred hcchHHHHHHHHHHHhhhhCceeeecch--hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEec Q lcl|Aclame:pro 51 LRNSDLFSIILQLSSDLAIVKINAEKKK--NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLR 128 (392) Q Consensus 51 l~~~~v~~~i~~ia~~ia~lp~~~~~~~--~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~ 128 (392) +.++-....++..+.-+-.-|+++.-.+ ....+..=+. .........+..+.+.+|.+|+.+..+.+|++. +..++ T Consensus 81 i~~n~~k~Ivd~~~~~l~g~p~~~~~~d~~~~~~l~~~~~-n~~~~~~~e~~~~~~~~G~~~~~~~~d~~~~~~-i~~~~ 158 (474) T protein:vir:94 81 ITTNFHQNLVDQKVSYVASKPVTYSCEDENVLKVIHDVLD-TRWDNKLIDILTATSNKGIDWLQVYINENGEMK-LFRVP 158 (474) T ss_pred eecchHHHHHHHHHhhhhcCCceeccCcHHHHHHHHHHHh-ccHHHHHHHHHHHHhhcCceEEEEEecCCCeeE-EEEEc Confidence 2234455567777777766676653222 1222211111 123344455677888999999999998888754 67788 Q ss_pred cccceeeecCC-CceE-EEEEEecCCcceeeEEEecce-----------------------------------EEEecCC Q lcl|Aclame:pro 129 PSQVNTYYFEY-ENGM-YYNITFDDPKIEPILQAPQSD-----------------------------------LIHMKLL 171 (392) Q Consensus 129 ~~~v~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~-----------------------------------vih~~~~ 171 (392) |..+.+..+.. .+.+ +....+..........+.... |++++++ T Consensus 159 p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn 238 (474) T protein:vir:94 159 AEQAIPIWVDKEREELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHVQSHFSNGNWGRVPFIAFKNN 238 (474) T ss_pred ccceEEEEcCCCCCceEEEEEEEEecCeEEEEEEeCCeEEEEEEcCCccccccccCcCcccccccccCCCccceEEecCC Confidence 88888877643 1222 111111111111111122222 3333321 Q ss_pred CccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeeccCCce Q lcl|Aclame:pro 172 SIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEE 251 (392) Q Consensus 172 ~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~ 251 (392) ..|.|-+..+...++..+.+.....+.++..+.|-.+++--.. ...+..... ....+++.+++|.+ T Consensus 239 -----~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~~~~~lv~~g~~~-~~~~~~~~~--------~~~~~~i~~~~~~~ 304 (474) T protein:vir:94 239 -----PEEVSDIWMYKSIIDAIDKRLSDAQNMFDESVELIYILKGYEG-EDLEEFMRG--------LKYYKAINVDGDGG 304 (474) T ss_pred -----cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCc-ccchhhhhh--------hhccceeeccCCCc Confidence 2578888888888887777766666666666667665553221 111111111 11234566666655 Q ss_pred EEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHH--------------HHHHHHHHHHHHHHHH Q lcl|Aclame:pro 252 FTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISG--------------MYASALNRYLRPAISE 317 (392) Q Consensus 252 ~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~--------------~~~~~l~p~l~~i~~~ 317 (392) .+.++.......+.+..+...+.|...-++|..-.+..+ ++.+..+.+. .+...+...++.|.+. T Consensus 305 ~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~-~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~ 383 (474) T protein:vir:94 305 VETIQVEVPVSSTKEYIDLMRVYIMEFGQGVDFQTDKFG-SAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIIDF 383 (474) T ss_pred eeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 555554444445566677777888888888753332111 1222222222 2222233333322222 Q ss_pred HHHHhh-hhhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCc---cccc--------ccCCCCCCCC Q lcl|Aclame:pro 318 LEYKLS-DHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPK---DLPA--------PENTNKKTTG 385 (392) Q Consensus 318 l~~~l~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~--------~~~~~~~~~g 385 (392) +..+.. ..+.+.+. +..+...++.++.+.++|+++..-+.+++ |+..+ |+.. ....++..++ T Consensus 384 ~~~~~d~~~i~v~f~---~~~p~~~~e~a~~~~~~g~iS~et~l~~l---~~v~D~~~E~eri~~E~~~~~~~~~~~~~~ 457 (474) T protein:vir:94 384 NNLKTDVKDIEISFN---FNRMMNDAEQSQIIAQSQYLSRETLVKSS---PLVDDYKAELERIEQEQMEYNKQLPNLDDG 457 (474) T ss_pred hCCCcccceeeEEec---cCcccCHHHHHHHHHHcCCCCHHHHHHhC---CCCCCHHHHHHHHHHHHHHHHhhccccCCC Confidence 211110 11111111 22334455666677788999987666544 44332 1111 1233444444 Q ss_pred CCCCCCC Q lcl|Aclame:pro 386 QSNEPVP 392 (392) Q Consensus 386 d~~~p~p 392 (392) +++...+ T Consensus 458 ~~~~~~~ 464 (474) T protein:vir:94 458 GADGAQQ 464 (474) T ss_pred CCCCccc Confidence 4433333 No 182 >protein:vir:78537 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491582;genbank:gi:157786405;genbank:GeneID:5625689 Probab=97.75 E-value=2.3e-05 Score=46.04 Aligned_cols=371 Identities=12% Similarity=0.060 Sum_probs=149.9 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhh---hhcchHHHHHHHHHHHhhhhCceeeecc Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARA---ALRNSDLFSIILQLSSDLAIVKINAEKK 77 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---al~~~~v~~~i~~ia~~ia~lp~~~~~~ 77 (392) ++=.+.+.+.+....- .....++ .+.. .+ ...+..+..+. -+...-..-+|+..+..+---.+.+-+. T Consensus 7 ~i~~L~~~~~~~~~r~--~~~~~Yy-~G~~-----~i-~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~~~~d 77 (480) T protein:vir:78 7 HVERLQGLLARDLPNL--LEAEAYR-NGTR-----RL-KTIGIGAPPELAYLDVQPGWVATYLRTLSDRLDIEGFRISED 77 (480) T ss_pred HHHHHHHHHHHHHHHH--HHHHHHH-hccc-----cc-hhcccccchhhhhhhhhcchHHHHHHHHHhhhccCceecCCC Confidence 1111212111110000 0000000 0000 00 00000011100 0011122334444444332223333221 Q ss_pred -hhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEec------ccCCceeEEEEeccccceeeecCCC-c-eEEE-EE Q lcl|Aclame:pro 78 -KNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWR------NANGADMKWEYLRPSQVNTYYFEYE-N-GMYY-NI 147 (392) Q Consensus 78 -~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r------~~~G~~~~l~~l~~~~v~~~~~~~~-~-~~~~-~~ 147 (392) +....+.+-...-........+..+.+.+|.||+.+.+ +.+|.+ .+.+++|..+.+.++... + ..+. .+ T Consensus 78 ~~~~~~l~~i~~~N~~~~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~~~~-~i~~~~p~~~~~i~D~~~~~~~~~~i~~ 156 (480) T protein:vir:78 78 SEGLEELWNWWQANDLDEESVLGHDDSLTFGRAYITVSHPDVESGDPAGIP-LIRVESPLYMYAELDPRNTRRVTRAVRL 156 (480) T ss_pred chhHHHHHHHHHhcCHHHHHHHHHHHHhhcCceEEEeecCccccCCCCCee-EEEEEcccceEEEEcCCCccceEEEEEE Confidence 11111111111113445567788899999999998875 345655 477888888888776532 1 1111 11 Q ss_pred Ee--cCCc-ceee-----------------------------EEEecceEEEecCCCccccccCCCHHHH-HHHHHHHHH Q lcl|Aclame:pro 148 TF--DDPK-IEPI-----------------------------LQAPQSDLIHMKLLSIDGGKTGISPLYS-LRRESKIQR 194 (392) Q Consensus 148 ~~--~~~~-~~~~-----------------------------~~~~~~~vih~~~~~~~~~~~G~s~l~~-~~~~i~~~~ 194 (392) +. ++.. .... ..+..-.|+||.++...+...|.|-+.. +...++... T Consensus 157 ~~~~d~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~n~~~~~~~~G~sdi~~~i~~l~Da~~ 236 (480) T protein:vir:78 157 YTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPVVPLTNDPRLGNRYGRSEISPELRKVTDAAS 236 (480) T ss_pred EEeecCCcceEEEEEEeCCeEEEEEecCCCcccccccccccccCCCCcceEEeecccccCCccCccchhHHHHHHHHHHH Confidence 00 0000 0000 1122335566665544444567776653 444455444 Q ss_pred HHHHHHHHHHHccCCcceEEee-CCCCCchHHHHHHHHHHHhccccCCceeecc-CCceEEeccCChhhHHHHHHHHHHH Q lcl|Aclame:pro 195 ASDRLTISSLNSSLNVPGVLTV-KGGGLLSDKDKASRSRSFMKRSRSGGPVVLD-DLEEFTALEIKSNVAQLLSQTDWTS 272 (392) Q Consensus 195 ~~~~~~~~~~~ng~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~-~g~~~~~l~~~~~d~~~~e~~~~~~ 272 (392) .+........+-.+.|..++.- +......+..... ... ..+.++.++ ++.++.++..+.-+ .+++..+..+ T Consensus 237 ~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~i 309 (480) T protein:vir:78 237 RTLMNLQSASQILGTPLRVISGVTTDELTNDGENTT-LDI-----YYGRILTLASEAAKISEFKAAELR-NFAEEMEVFR 309 (480) T ss_pred HHHHHHHHHHHhhcchhhhhhCCCccccccccccch-hhh-----hhhhhccCCCCCceEEecCccCHH-HHHHHHHHHH Confidence 4433333333333445444431 1111011111111 111 113344444 45677776654333 3788888999 Q ss_pred HHHHHHhcccHHHcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------h-------hccchhhhh Q lcl|Aclame:pro 273 KQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISELEYKLSD-----------H-------ISVNMRPAI 334 (392) Q Consensus 273 ~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~~~~l~p~l~~i~~~l~~~l~~-----------~-------~~~d~~~~~ 334 (392) .+|+..-++|++.+|+.+.+.++..+++..+ ..+.--+...+..+...|.. . +.+.+..-. T Consensus 310 ~~~~~~~~~p~~~fg~~~~n~~Sg~Al~~~~-~~l~~k~~~~~~~f~~~l~~~~rl~~~~~~~~~~~~~~~i~v~w~~~~ 388 (480) T protein:vir:78 310 KEAASITGLPPQYLSSSSENPASAEAIIATD-SRIVKMAERKGRIFGGAWERAMRIAMQIMGREVTEEYTRLETVWRDPS 388 (480) T ss_pred HHHhcccCCCHHHhccccCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceeeeEEecCCC Confidence 9999999999999987543333333333222 22222223333322222210 0 111111111 Q ss_pred hcChHHHHHHHHHHHhCC--ccCHHHHHHHHHhCCCCCccccccc------------CCC-CCC-------CCCCCC--- Q lcl|Aclame:pro 335 DPLGDNYLSTISTATRWG--ALAENQATFVLQEAGYIPKDLPAPE------------NTN-KKT-------TGQSNE--- 389 (392) Q Consensus 335 ~~~~~~~~~~~~~~~~~g--~~t~nE~R~~l~~~g~~~~e~~~~~------------~~~-~~~-------~gd~~~--- 389 (392) ..+..+.+..+.+++.+| +++..-+++++ |+.++++.+++ .+. +.. .++.++ T Consensus 389 ~~s~~~~ad~~~kl~~~g~~~~s~et~~~~l---g~~~d~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (480) T protein:vir:78 389 TPTVAAKADAVSKLYANGQGPIPKEQARIDL---GYTATQREQMRDWDKQETEDMIDTLYSTTKAQADATPKPTVTETKT 465 (480) T ss_pred CCCHHHHHHHHHHHHHhcccCCCHHHHHhcC---CCCHhHHHHHHHHHHHHHHHHHHHhhccccCCCccccCCCCCCCCC Confidence 234455666677777655 55554444443 66554332211 011 111 111111 Q ss_pred ---CCC Q lcl|Aclame:pro 390 ---PVP 392 (392) Q Consensus 390 ---p~p 392 (392) .+| T Consensus 466 ~~~~~~ 471 (480) T protein:vir:78 466 ETQTSP 471 (480) T ss_pred ccCCCc Confidence 112 No 183 >protein:vir:5961 Length: 503 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690661;genbank:geneid:6329220;genbank:gi:22855055;interpro:IPR006428;uniprot:P54309;genbank:GeneID:955279 Probab=97.72 E-value=2.5e-05 Score=45.77 Aligned_cols=372 Identities=9% Similarity=0.069 Sum_probs=162.0 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhh---hhccCCCCccc----chhhhhcchHHHHHHHHHHHhhhhCcee Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIM---ESLLGDNNEWV----SARAALRNSDLFSIILQLSSDLAIVKIN 73 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~al~~~~v~~~i~~ia~~ia~lp~~ 73 (392) ++..+.+ ... ...-.....++.... .+. .......+..+ .+..-+.++-...+|+..+.-+-.=|++ T Consensus 33 ~i~~~i~---~~~-~~~~~~~~~YY~g~~--~i~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~yl~g~~~~ 106 (503) T protein:vir:59 33 MIQKLID---EHN-PEPLLKGVRYYMCEN--DIEKKRRTYYDAAGQQLVDDTKTNNRTSHAWHKLFVDQKTQYLVGEPVT 106 (503) T ss_pred HHHHHHH---hhc-HHHHHHHHHHhcccc--chhhccchhcccccccccccccccceeecchHHHHHHHHHhhhhcCCee Confidence 2222211 110 000000000110000 000 00000000000 0011122344566777777777666765 Q ss_pred eecch--hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCC-ceE-EE--EE Q lcl|Aclame:pro 74 AEKKK--NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYE-NGM-YY--NI 147 (392) Q Consensus 74 ~~~~~--~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~-~~~-~~--~~ 147 (392) +.-.+ ....+..=.. -........+..+.+.+|.+|+++..+.+|++. +..++|..+.+..+... +.+ .. ++ T Consensus 107 ~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~dg~~~-i~~~~p~~~~~i~d~~~~~~~~~~ir~~ 184 (503) T protein:vir:59 107 FTSDNKTLLEYVNELAD-DDFDDILNETVKNMSNKGIEYWHPFVDEEGEFD-YVIFPAEEMIVVYKDNTRRDILFALRYY 184 (503) T ss_pred eccCcHHHHHHHHHHHh-cCHHHHHHHHHHHHhhCCeEEEEEeecCCCceE-EEEEccceeEEEEeCCCCCceEEEEEEE Confidence 43222 1111111111 134555666888889999999999998888764 78888888887766532 211 11 11 Q ss_pred EecC--Cc-ceeeEEEecceEEEecCC----------------------------------CccccccCCCHHHHHHHHH Q lcl|Aclame:pro 148 TFDD--PK-IEPILQAPQSDLIHMKLL----------------------------------SIDGGKTGISPLYSLRRES 190 (392) Q Consensus 148 ~~~~--~~-~~~~~~~~~~~vih~~~~----------------------------------~~~~~~~G~s~l~~~~~~i 190 (392) .... +. ......+....+.++... ...+...|.|-+..+...+ T Consensus 185 ~~~~~~~~~~~~~evy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPiv~~~nn~~~~sd~~~~~~li 264 (503) T protein:vir:59 185 SYKGIMGEETQKAELYTDTHVYYYEKIDGVYQMDYSYGENNPRPHMTKGGQAIGWGRVPIIPFKNNEEMVSDLKFYKDLI 264 (503) T ss_pred EEecCCCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccceeecceeccCCccceEEecCCCCCCcchhhhHHHH Confidence 1111 00 001112222222222110 0001124788888888888 Q ss_pred HHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHH Q lcl|Aclame:pro 191 KIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDW 270 (392) Q Consensus 191 ~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~ 270 (392) +..+.+.....+.++..+.|-.+++--......+ ..... ..++++.++++.+.+.+........+....+. T Consensus 265 Da~d~~~s~~~~~~~~~~~~~~v~~g~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 335 (503) T protein:vir:59 265 DNYDSITSSTMDSFSDFQQIVYVLKNYDGENPKE-FTANL--------RYHSVIKVSGDGGVDTLRAEIPVDSAAKELER 335 (503) T ss_pred HHHHHHHHHHHHHHHHhcCCeeEeecCCccccch-hhhhh--------hcccceeccCCCcceeEeccCCHHHHHHHHHH Confidence 8777776666666677777766655322111111 11111 11234555554444444433333344455555 Q ss_pred HHHHHHHHhccc---HHHcCCcccccch----------HHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhccchh Q lcl|Aclame:pro 271 TSKQYAKVYGLP---DSYIGGQGDQQSS----------IQQISGMYASALNRYLRPAISELEYKLS------DHISVNMR 331 (392) Q Consensus 271 ~~~~Ia~~fgVP---~~~lg~~~~~~~~----------~~~~~~~~~~~l~p~l~~i~~~l~~~l~------~~~~~d~~ 331 (392) ..+.|...-++| ...+++..++.+- .+..+..+...|.-.++.+...+...-. ..+.+.+. T Consensus 336 l~~~i~~~s~~p~~~~~~~~~~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~i~i~f~ 415 (503) T protein:vir:59 336 IQDELYKSAQAVDNSPETIGGGATGPALENLYALLDLKANMAERKIRAGLRLFFWFFAEYLRNTGKGDFNPDKELTMTFT 415 (503) T ss_pred HHHHHHHHhcccCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccceeEEeC Confidence 555665555554 3333332221110 0112223344444444444444332211 11233333 Q ss_pred hhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCc---ccccc---------------cCCCCCCCCCCCCCCC Q lcl|Aclame:pro 332 PAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPK---DLPAP---------------ENTNKKTTGQSNEPVP 392 (392) Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~~---------------~~~~~~~~gd~~~p~p 392 (392) .-+..+..+.+..+.+++.+|+++...+.+++ |+..+ |+..+ ++......++++.|.| T Consensus 416 ~~~p~d~~~~~~~~~kl~~~GiiS~et~l~~l---~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (503) T protein:vir:59 416 RTRIQNDSEIVQSLVQGVTGGIMSKETAVARN---PFVQDPEEELARIEEEMNQYAEMQGNLLDDEGGDDDLEEDDPNA 491 (503) T ss_pred CCCCCCHHHHHHHHHHHHhCCCCchHHHHHhC---CCCCCHHHHHHHHHHHHHHHHhhhccccCccCCCCCCCcCCCCC Confidence 33445667788888999999999887766543 43321 21111 1111112223333444 No 184 >protein:vir:94101 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240229;genbank:gi:66395892;genbank:GeneID:5133270 Probab=97.69 E-value=2.8e-05 Score=45.53 Aligned_cols=367 Identities=12% Similarity=0.003 Sum_probs=167.4 Q ss_pred Ccchhhhhhccccccccc-------------ccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEA-------------GSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDL 67 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~i 67 (392) ++-.+.+........... ...+................-.. ..+..-+.++-....|+..+.-+ T Consensus 19 ~i~~~i~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ki~~n~~~~ivd~~~~yl 95 (474) T protein:vir:94 19 HIEALIESHKDDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRLD---VSVNNKLNNSFDSEIVDTRVGYL 95 (474) T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhcccccccc---cCcccccccchHHHHHHhHhhhe Confidence 333332211110000000 00000000000000000000000 00111122344555677777666 Q ss_pred hhCceeeecch----h---hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCC Q lcl|Aclame:pro 68 AIVKINAEKKK----N---QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYE 140 (392) Q Consensus 68 a~lp~~~~~~~----~---~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~ 140 (392) -+-|+++.-.+ . ...+.+=............+..++..+|.||.++..+.+|++ .+..++|..+.+..+..+ T Consensus 96 ~g~pv~~~~~~~~~~~e~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~-~~~~i~p~~~~~v~d~~~ 174 (474) T protein:vir:94 96 HGVPVTYDLDENAEKNEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYGARLAYIDTNGDI-RIKNIDPYNVIFVGDNIL 174 (474) T ss_pred eccceeEeeCCCCcchHHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCee-EEEEEcccceEEEEcCCC Confidence 66677653211 1 112222222224455667788889999999999988888875 577788888877766544 Q ss_pred ceEEEE--EEecCCcce----eeEEEecce--------------------------EEEecCCCccccccCCCHHHHHHH Q lcl|Aclame:pro 141 NGMYYN--ITFDDPKIE----PILQAPQSD--------------------------LIHMKLLSIDGGKTGISPLYSLRR 188 (392) Q Consensus 141 ~~~~~~--~~~~~~~~~----~~~~~~~~~--------------------------vih~~~~~~~~~~~G~s~l~~~~~ 188 (392) ...+.. +.......+ ....+.... |+++++ ...|.|-+..+.. T Consensus 175 ~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~sd~e~v~~ 249 (474) T protein:vir:94 175 EPTYSLRYFYEKDDDNGTDYVYAEFYDNAYYYVFRGEGIDALQEVGRYEHLFDYNPLFGVPN-----NKEMIGDAEKVIH 249 (474) T ss_pred ceEEEEEEEEEeeCCCceEEEEEEEEcCceEEEEeecCCCcccccccccCCCCccceEEecC-----CCCCCCchHHHHH Confidence 332211 111000000 001111222 223322 1247777887777 Q ss_pred HHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHH Q lcl|Aclame:pro 189 ESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQT 268 (392) Q Consensus 189 ~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~ 268 (392) .++....+..-..+.++..+.|-.+++--. ..++. .... ...|.+.+.+++.+++-+.....+..+.... T Consensus 250 liDa~d~~~S~~~~~~~~~~~~~l~i~g~~--~~~~~-~~~~-------~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 319 (474) T protein:vir:94 250 LIDAYDLTMSDASSEISQTRLAYLVLRGMG--MSEEM-IQET-------QKSGAFELFDKDMDVKYLTKDVNDTMIENHL 319 (474) T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhccCC--CCchh-hhhh-------hhcceeEecCCCCceeEEeccCCHHHHHHHH Confidence 777777666656666665556655554321 11111 1111 1134455556666766666554455567778 Q ss_pred HHHHHHHHHHhcccHHHcCCcccccchHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhh-------hhhc Q lcl|Aclame:pro 269 DWTSKQYAKVYGLPDSYIGGQGDQQSSIQQIS--------------GMYASALNRYLRPAISELEYKLS-------DHIS 327 (392) Q Consensus 269 ~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~--------------~~~~~~l~p~l~~i~~~l~~~l~-------~~~~ 327 (392) +...+.|...-++|..-.+..+. +.+..+.+ ..+...+.-.++.|...++.+-. ..++ T Consensus 320 ~~l~~~I~~~s~~p~~~~~~~~~-n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~~~~~~~~~~~i~ 398 (474) T protein:vir:94 320 DRIEKNIMRFAKSVNFNSDEFNG-NVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKGYNLDDDSYLNLI 398 (474) T ss_pred HHHHHHHHHHhCCcccccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccccce Confidence 88889999999998765432221 22222222 23344444444444444433211 1122 Q ss_pred cchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCc---cccc--------ccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 328 VNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPK---DLPA--------PENTNKKTTGQSNEPVP 392 (392) Q Consensus 328 ~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~--------~~~~~~~~~gd~~~p~p 392 (392) +.+..-+..+..+.+..+.++ .|+++..-+.+++ |+..+ |+.. .+..+...+|+.++-.+ T Consensus 399 ~~f~~~~p~d~~e~a~~~~kl--~g~iS~et~~~~l---~~v~d~~~E~eri~~E~~e~~~~~~~~~~~~~~~~~~ 469 (474) T protein:vir:94 399 FKFTRNIPVNKLEESQVLINL--KGQVSERTRLGQS---QLVDDVDYELDEMEKESLEFNDKLPDIDEGDANDKSQ 469 (474) T ss_pred EEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhC---CCCCCHHHHHHHHHHHHHHHHhhcccccCCCcCCCCc Confidence 223323334556677777776 4788887665544 44332 1111 11233333333333223 No 185 >protein:vir:105889 Length: 474 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004371;genbank:gi:122891826;genbank:GeneID:4712360 Probab=97.69 E-value=2.8e-05 Score=45.53 Aligned_cols=367 Identities=12% Similarity=0.003 Sum_probs=167.4 Q ss_pred Ccchhhhhhccccccccc-------------ccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEA-------------GSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDL 67 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~i 67 (392) ++-.+.+........... ...+................-.. ..+..-+.++-....|+..+.-+ T Consensus 19 ~i~~~i~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ki~~n~~~~ivd~~~~yl 95 (474) T protein:vir:10 19 HIEALIESHKDDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRLD---VSVNNKLNNSFDSEIVDTRVGYL 95 (474) T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhcccccccc---cCcccccccchHHHHHHhHhhhe Confidence 333332211110000000 00000000000000000000000 00111122344555677777666 Q ss_pred hhCceeeecch----h---hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCC Q lcl|Aclame:pro 68 AIVKINAEKKK----N---QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYE 140 (392) Q Consensus 68 a~lp~~~~~~~----~---~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~ 140 (392) -+-|+++.-.+ . ...+.+=............+..++..+|.||.++..+.+|++ .+..++|..+.+..+..+ T Consensus 96 ~g~pv~~~~~~~~~~~e~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~-~~~~i~p~~~~~v~d~~~ 174 (474) T protein:vir:10 96 HGVPVTYDLDENAEKNEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYGARLAYIDTNGDI-RIKNIDPYNVIFVGDNIL 174 (474) T ss_pred eccceeEeeCCCCcchHHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCee-EEEEEcccceEEEEcCCC Confidence 66677653211 1 112222222224455667788889999999999988888875 577788888877766544 Q ss_pred ceEEEE--EEecCCcce----eeEEEecce--------------------------EEEecCCCccccccCCCHHHHHHH Q lcl|Aclame:pro 141 NGMYYN--ITFDDPKIE----PILQAPQSD--------------------------LIHMKLLSIDGGKTGISPLYSLRR 188 (392) Q Consensus 141 ~~~~~~--~~~~~~~~~----~~~~~~~~~--------------------------vih~~~~~~~~~~~G~s~l~~~~~ 188 (392) ...+.. +.......+ ....+.... |+++++ ...|.|-+..+.. T Consensus 175 ~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~sd~e~v~~ 249 (474) T protein:vir:10 175 EPTYSLRYFYEKDDDNGTDYVYAEFYDNAYYYVFRGEGIDALQEVGRYEHLFDYNPLFGVPN-----NKEMIGDAEKVIH 249 (474) T ss_pred ceEEEEEEEEEeeCCCceEEEEEEEEcCceEEEEeecCCCcccccccccCCCCccceEEecC-----CCCCCCchHHHHH Confidence 332211 111000000 001111222 223322 1247777887777 Q ss_pred HHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHH Q lcl|Aclame:pro 189 ESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQT 268 (392) Q Consensus 189 ~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~ 268 (392) .++....+..-..+.++..+.|-.+++--. ..++. .... ...|.+.+.+++.+++-+.....+..+.... T Consensus 250 liDa~d~~~S~~~~~~~~~~~~~l~i~g~~--~~~~~-~~~~-------~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 319 (474) T protein:vir:10 250 LIDAYDLTMSDASSEISQTRLAYLVLRGMG--MSEEM-IQET-------QKSGAFELFDKDMDVKYLTKDVNDTMIENHL 319 (474) T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhccCC--CCchh-hhhh-------hhcceeEecCCCCceeEEeccCCHHHHHHHH Confidence 777777666656666665556655554321 11111 1111 1134455556666766666554455567778 Q ss_pred HHHHHHHHHHhcccHHHcCCcccccchHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhh-------hhhc Q lcl|Aclame:pro 269 DWTSKQYAKVYGLPDSYIGGQGDQQSSIQQIS--------------GMYASALNRYLRPAISELEYKLS-------DHIS 327 (392) Q Consensus 269 ~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~--------------~~~~~~l~p~l~~i~~~l~~~l~-------~~~~ 327 (392) +...+.|...-++|..-.+..+. +.+..+.+ ..+...+.-.++.|...++.+-. ..++ T Consensus 320 ~~l~~~I~~~s~~p~~~~~~~~~-n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~~~~~~~~~~~i~ 398 (474) T protein:vir:10 320 DRIEKNIMRFAKSVNFNSDEFNG-NVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKGYNLDDDSYLNLI 398 (474) T ss_pred HHHHHHHHHHhCCcccccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccccce Confidence 88889999999998765432221 22222222 23344444444444444433211 1122 Q ss_pred cchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCc---cccc--------ccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 328 VNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPK---DLPA--------PENTNKKTTGQSNEPVP 392 (392) Q Consensus 328 ~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~--------~~~~~~~~~gd~~~p~p 392 (392) +.+..-+..+..+.+..+.++ .|+++..-+.+++ |+..+ |+.. .+..+...+|+.++-.+ T Consensus 399 ~~f~~~~p~d~~e~a~~~~kl--~g~iS~et~~~~l---~~v~d~~~E~eri~~E~~e~~~~~~~~~~~~~~~~~~ 469 (474) T protein:vir:10 399 FKFTRNIPVNKLEESQVLINL--KGQVSERTRLGQS---QLVDDVDYELDEMEKESLEFNDKLPDIDEGDANDKSQ 469 (474) T ss_pred EEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhC---CCCCCHHHHHHHHHHHHHHHHhhcccccCCCcCCCCc Confidence 223323334556677777776 4788887665544 44332 1111 11233333333333223 No 186 >protein:vir:1587 Length: 508 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695169;swissprot:trembl:o03928;genbank:gi:23455800;interpro:IPR006432;uniprot:O03928;genbank:GeneID:955566 Probab=97.67 E-value=3e-05 Score=45.39 Aligned_cols=374 Identities=9% Similarity=0.051 Sum_probs=164.0 Q ss_pred chhhh----hhccccc----cccccccc--cc--ccCcchhhh---hhhccCCCC----ccc----chhhhhcchHHHHH Q lcl|Aclame:pro 3 LPILN----FINQTND----PPEAGSVQ--SY--FPDGNDAQI---MESLLGDNN----EWV----SARAALRNSDLFSI 59 (392) Q Consensus 3 Mg~~n----~~~~~~~----~~~~~~~~--~~--~~~~~~~~~---~~~~~~~~~----~~~----~~~~al~~~~v~~~ 59 (392) ||+|. +|++... ..+-..+. .. .+......+ ..++.+... ... ..+..........+ T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ri~~~~~~y~g~~~~~~~~~~~~~~~~~~~~sln~~~~i 80 (508) T protein:vir:15 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) T ss_pred CChHHHHHHHHHHHHHHhccccchHHhhcccccccCHHHHHHHHHHHHHhcCCCcccccccCCCCccccceeecchHHHH Confidence 77764 5544111 11111111 00 010111111 111111100 000 00111122334555 Q ss_pred HHHHHHhhhhCce--eeecch-hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeee Q lcl|Aclame:pro 60 ILQLSSDLAIVKI--NAEKKK-NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYY 136 (392) Q Consensus 60 i~~ia~~ia~lp~--~~~~~~-~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~ 136 (392) ++.+|+-+-.=|. .+-+.+ .+..+.+=-..-....-.+..+.+.+..|.+++.+..+.. . +.+..++|..+-+.. T Consensus 81 ~~~~A~lv~~e~~~i~v~~~~~~~e~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~-~-~~i~~v~ad~~~P~~ 158 (508) T protein:vir:15 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGN-H-IKIAWVRADQFYPLQ 158 (508) T ss_pred HHHHHhhhhCCCceEEeCCchHHHHHHHHHHHhccHHHHHHHHHHHHhhcCceEEEEEEeCC-e-eEEEEEcCCeeEEEE Confidence 5666665544343 332222 1122221111111223334455666677888877665533 2 345566666655432 Q ss_pred cCCCc------------------eEEEEE---E-------------ecC-C--cceeeEEEe------------------ Q lcl|Aclame:pro 137 FEYEN------------------GMYYNI---T-------------FDD-P--KIEPILQAP------------------ 161 (392) Q Consensus 137 ~~~~~------------------~~~~~~---~-------------~~~-~--~~~~~~~~~------------------ 161 (392) ...++ .+|... . +.. . ..|..+.+. T Consensus 159 ~d~~~~~~~af~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e~~~l~~~~~~~g~~ 238 (508) T protein:vir:15 159 SNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQ 238 (508) T ss_pred EcCCCeEEEEEEEEEEeecCCCceEEEEEEEEEEecCcceEEEEEEEecCCchhcCcccchhhcccccCCCcceEecCCC Confidence 11111 111100 0 000 0 001111000 Q ss_pred cceEEEecCCCcc----ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEe---eCCCCCchHHHHHHHHHHH Q lcl|Aclame:pro 162 QSDLIHMKLLSID----GGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLT---VKGGGLLSDKDKASRSRSF 234 (392) Q Consensus 162 ~~~vih~~~~~~~----~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~---~~~~~~~~~~~~~~~~~~~ 234 (392) .--..||+.+.++ +...|.|.+..+...++..+.......+-++ .+++..++. ++.+.... . . + T Consensus 239 ~p~f~y~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~l~~d~~~~-~---~----~ 309 (508) T protein:vir:15 239 RPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR-LGQKHIAVQPGMLRFDDEHK-P---T----F 309 (508) T ss_pred cceeEEecCCccccccCCCCcCCchHhhhHHHHHHHHHHHHHHHHHHH-hcccceeechHHhcCCCCCc-c---c----c Confidence 0112344432111 2346999999999999988888777777775 444444432 11111100 0 0 0 Q ss_pred hccccCCceee--ccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHH---HHHHHHH Q lcl|Aclame:pro 235 MKRSRSGGPVV--LDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGM---YASALNR 309 (392) Q Consensus 235 ~~~~~~g~~~v--l~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~---~~~~l~p 309 (392) ....+....+- -++|..++.++....+-++.+..+...+.|....|+++..+|...++..+..+.... ...++.- T Consensus 310 ~~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~~~~~~gls~~~f~~~~~~~~TAtei~s~~~~~~~t~~~ 389 (508) T protein:vir:15 310 DTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSS 389 (508) T ss_pred CCCCeeEEeccCCCCCCCceeEeecccChHHHHHHHHHHHHHHHHHhCCCchhcccccCccccHHHHHHHHHHHHHHHHH Confidence 00001001011 134456888888888888999999999999999999999998644433222222111 1111222 Q ss_pred HHHHHHHHHHHHh---h---h---------------------hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHH Q lcl|Aclame:pro 310 YLRPAISELEYKL---S---D---------------------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFV 362 (392) Q Consensus 310 ~l~~i~~~l~~~l---~---~---------------------~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~ 362 (392) ..+.++..|...+ + . .+.+++..-+-.|.++....+..++.+|++++-+++.. T Consensus 390 ~~~~~~~al~~lv~~il~l~~~~~~~~~g~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~v~aGi~s~e~~i~~ 469 (508) T protein:vir:15 390 YLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQR 469 (508) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccCCcceEEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHh Confidence 2222222222210 0 0 12233333445566777888889999999999887653 Q ss_pred HHhCCCCCcc----ccccc----------CCCCCCCCCCCC Q lcl|Aclame:pro 363 LQEAGYIPKD----LPAPE----------NTNKKTTGQSNE 389 (392) Q Consensus 363 l~~~g~~~~e----~~~~~----------~~~~~~~gd~~~ 389 (392) ..|+...+ ++++. +.-...+|+.+| T Consensus 470 --~~g~~deea~~el~ri~~E~~~~~~~~~~~~~~~g~~ge 508 (508) T protein:vir:15 470 --NYGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) T ss_pred --cCCCChHHHHHHHHHHHHhccccCccccccccCCCCCCC Confidence 24554432 22111 111123344555 No 187 >protein:vir:93747 Length: 472 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240454;genbank:gi:66396119;genbank:GeneID:5133516 Probab=97.65 E-value=3.2e-05 Score=45.20 Aligned_cols=366 Identities=11% Similarity=0.008 Sum_probs=154.0 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhh-hh---ccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeec Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIM-ES---LLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEK 76 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~ 76 (392) ++-.+.+....+...- .....++. +.. .++ .. .........-...-+..+-...+|+..+.-+-.-|+++.- T Consensus 28 ~i~~~i~~~~~~~~~~--~~~~~YY~-g~~-~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~ 103 (472) T protein:vir:93 28 MIVRYIKQHLEKLPEI--SIGQEYYE-QRP-DIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKH 103 (472) T ss_pred HHHHHHHHHHHHHHHH--HHHHHHhc-ccc-ccccccchhhccccccccccccccccchHHHHHHHHhhhhcccCeeecc Confidence 1111111111100000 00000000 000 000 00 0000000000011122344556677777666555655432 Q ss_pred ch--hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCC-Cc-eEEEEEEecCC Q lcl|Aclame:pro 77 KK--NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEY-EN-GMYYNITFDDP 152 (392) Q Consensus 77 ~~--~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~-~~-~~~~~~~~~~~ 152 (392) .+ ....+..=..+ ........+..+.+.+|.||+++..+.+|++. +..++|..+.+..+.. .+ ..+....+... T Consensus 104 ~d~~~~~~l~~~~~n-~~~~~~~~~~~~~~~~G~~~~~v~~d~d~~~~-i~~~~p~~~~~i~d~~~~~~~~~~ir~~~~~ 181 (472) T protein:vir:93 104 TDDEVVKRIDEVLGN-RFDDKLHSVLTGASNKGIEWLHPYLDEEGEFK-LFRVPAEQGIPIWTDKEHEELEAFIRMYKLE 181 (472) T ss_pred CChHHHHHHHHHHhc-cHHHHHHHHHHHHhhcCeEEEEEEECCCCceE-EEEEcccceEEEEcCCCCCceEEEEEEEEee Confidence 21 11111110001 23344455678889999999999988888764 7778998888887532 22 12111111100 Q ss_pred cceeeEEEecc-----------------------------------eEEEecCCCccccccCCCHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 153 KIEPILQAPQS-----------------------------------DLIHMKLLSIDGGKTGISPLYSLRRESKIQRASD 197 (392) Q Consensus 153 ~~~~~~~~~~~-----------------------------------~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~ 197 (392) .......+... .|++++++ ..|.|-+..+...++....+. T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn-----~~g~s~~e~v~~liDa~~~~~ 256 (472) T protein:vir:93 182 NETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNN-----DLEISDIFMYKTLIDAYNRRL 256 (472) T ss_pred cceeEEEEecCeEEEEEEecCeeeecccccccccccccccCCCCCcceEEecCC-----CCCCCchhhhHHHHHHHHHHH Confidence 00111111111 23333221 257888888888887777776 Q ss_pred HHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 198 RLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAK 277 (392) Q Consensus 198 ~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~ 277 (392) ....+.++..+.|-.+++--.. ....+..... ...+++.++++.+.+.+.....+..+....+...+.|+. T Consensus 257 s~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~ 327 (472) T protein:vir:93 257 SDLSNTFKDSNELTYVLTNYDD-QELPEFKRLL--------RYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIML 327 (472) T ss_pred HHHHHHHHHhcCceeEeecCCc-ccchhhHHHH--------hhccccccCCCCcceeEeecCCHHHHHHHHHHHHHHHHH Confidence 6666666777777666553211 1111111111 112344445554544444444556677778888889999 Q ss_pred HhcccHHHcCCcccccchHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhh-hhhccchhhhhhcChHHHH Q lcl|Aclame:pro 278 VYGLPDSYIGGQGDQQSSIQQISGM--------------YASALNRYLRPAISELEYKLS-DHISVNMRPAIDPLGDNYL 342 (392) Q Consensus 278 ~fgVP~~~lg~~~~~~~~~~~~~~~--------------~~~~l~p~l~~i~~~l~~~l~-~~~~~d~~~~~~~~~~~~~ 342 (392) .-++|..-.+..+. +.+..+.+.. +...+.-.++.+.+.+..+.. ..+.+.+..-+..+..+.+ T Consensus 328 ~s~~p~~~~~~~~~-n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~v~f~~~~p~~~~~~~ 406 (472) T protein:vir:93 328 FGQAVDFSSDKFGS-APSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQV 406 (472) T ss_pred HhCCCCCCcccccc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEeCCCCCCCHHHHH Confidence 99888655432221 2222233222 222222222222222211100 1122222222223445556 Q ss_pred HHHHHHHhCCccCHHHHHHHHHhCCCCCc---cccc--------ccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 343 STISTATRWGALAENQATFVLQEAGYIPK---DLPA--------PENTNKKTTGQSNEPVP 392 (392) Q Consensus 343 ~~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~--------~~~~~~~~~gd~~~p~p 392 (392) ..+.++ .|+++..-+.++ .|+..+ |+-. ...+...++++.+...+ T Consensus 407 ~~~~k~--~giis~et~l~~---l~~~~d~~~E~~ri~~E~~~~~~~~~~~~~~~~d~~~~ 462 (472) T protein:vir:93 407 QTAQQS--MGIVSHETVLEN---HPFVEDLQAELERIEQEQMEYNKQLPNLDDGGADGAQQ 462 (472) T ss_pred HHHHHH--hccCchHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHhccCcCcccCCCCCC Confidence 665555 577776554443 343322 1111 11122222222221111 No 188 >protein:vir:733 Length: 453 # NCBI annotation: minor structural protein 1 # Family: family:all:125 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108710;genbank:gi:13487832;genbank:GeneID:920851 Probab=97.64 E-value=3.4e-05 Score=45.06 Aligned_cols=379 Identities=12% Similarity=-0.003 Sum_probs=153.7 Q ss_pred Cc---chhhh--------------hhccccccccc-ccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHH Q lcl|Aclame:pro 1 MI---LPILN--------------FINQTNDPPEA-GSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQ 62 (392) Q Consensus 1 m~---Mg~~n--------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ 62 (392) |- -.+|. +++.......+ .....++. +.. .+........+. +..-+..+-....|+. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~~~~yy~-g~~-~i~~~~~~~~~~---~~~ki~~n~~~~ivd~ 75 (453) T protein:vir:73 1 MNLKPIKLMTYSRDEEITDKVVNDFMKKHQEEVERYEYLGNMYK-GIM-EISSQKAKDSWK---PDNRLTNNFAKYIVDT 75 (453) T ss_pred CccccceeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhc-ccc-chhcCCCCCccC---ccceeecchHHHHHHH Confidence 10 01110 11110000000 00000000 000 000000000000 0111122334445555 Q ss_pred HHHhhhhCceeeec--chhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCC Q lcl|Aclame:pro 63 LSSDLAIVKINAEK--KKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYE 140 (392) Q Consensus 63 ia~~ia~lp~~~~~--~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~ 140 (392) .+.-+-.-|+...- ......+..-............+..+.+.+|.+|+.+..+.+|.+. +..++|..+.+..+... T Consensus 76 ~~~~l~g~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~-i~~~~p~~~~~v~dd~~ 154 (453) T protein:vir:73 76 FVGYFNGIPIKKTHDDKSVLEAMQLFDNLNDMEDEESELAKIACVYGRAYELMYQNESTESE-VIYCSPLNVFMVYDDSI 154 (453) T ss_pred hhhhhcccCceeecCChHHHHHHHHHHHhcChhHHHHHHHHHHHhcCeEEEEEEeCCCCceE-EEEEcccceEEEEeCCC Confidence 55544444554322 1122222222222234445567788899999999999999898774 66778888877765543 Q ss_pred ce-E-EE-EEEecCCcceeeEEEecceEEEecCCC--------------------ccccccCCCHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 141 NG-M-YY-NITFDDPKIEPILQAPQSDLIHMKLLS--------------------IDGGKTGISPLYSLRRESKIQRASD 197 (392) Q Consensus 141 ~~-~-~~-~~~~~~~~~~~~~~~~~~~vih~~~~~--------------------~~~~~~G~s~l~~~~~~i~~~~~~~ 197 (392) +. . +. .+............+..+.++++.... ..+...|.|-+..+...++..+.+. T Consensus 155 ~~~~~~~i~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~liDa~~~~~ 234 (453) T protein:vir:73 155 KQKPLFAVYYGFDEEGNLSGTVYTLLETISITGKAGEVKFGESTYNVYSDLPIVEYNFNEERQSIFEPVHSLINSYNKVT 234 (453) T ss_pred CceeEEEEEEEEecCceEEEEEEeCCeEEEEEecCCceEEccceeccCCceeEEEecCCCCCCcchhhHHHHHHHHHHHH Confidence 22 1 11 111211111112223333333322110 0011257788888888887777776 Q ss_pred HHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 198 RLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAK 277 (392) Q Consensus 198 ~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~ 277 (392) ....+..+..+.|-.+++--..........+............+.....+.+.+++-++....+..+....+...+.|+. T Consensus 235 S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~ 314 (453) T protein:vir:73 235 SEKANDVEYFSDQYLVFLGAEVDEEDAKNIKDNRLINFFDKNSNGQGTNAAKVDVKFLDKPDSDVQTENLLNRLERSIFQ 314 (453) T ss_pred HHHHHHHHHhccceeeeecCCCCchhhhcccccccccccccccccccccccCceeEEeeecCCHHHHHHHHHHHHHHHHH Confidence 66666666666676666532111111111111111111112222233334555555555444445556667777888888 Q ss_pred HhcccHHHcCCcccccchHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhh----hhhccchhhhhhcChH Q lcl|Aclame:pro 278 VYGLPDSYIGGQGDQQSSIQQISG--------------MYASALNRYLRPAISELEYKLS----DHISVNMRPAIDPLGD 339 (392) Q Consensus 278 ~fgVP~~~lg~~~~~~~~~~~~~~--------------~~~~~l~p~l~~i~~~l~~~l~----~~~~~d~~~~~~~~~~ 339 (392) .-++|..-... .++.+..+.+. .+...+...++.+...+...-. ..+++.+..-+..+.. T Consensus 315 ~s~~p~~~~~~--~gn~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~i~v~f~~~~p~~~~ 392 (453) T protein:vir:73 315 FTMAANISDEN--FGNSSGVALAYKLQAMSNLALSFQRKFQSALNRRYSLWSSLSTNASNKDAWKDIEYTFTRNEPKDIK 392 (453) T ss_pred HhCCcccCccc--ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceEEeCCCCCCCHH Confidence 88887533221 12223223322 2222233322222221111100 1223333333334556 Q ss_pred HHHHHHHHHHhCCccCHHHHHHHHHhCCCCCc---ccccccC--CCCCCCCC-CCCCCC Q lcl|Aclame:pro 340 NYLSTISTATRWGALAENQATFVLQEAGYIPK---DLPAPEN--TNKKTTGQ-SNEPVP 392 (392) Q Consensus 340 ~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~~~~--~~~~~~gd-~~~p~p 392 (392) +.+..+.++. |+++..-+.++ .|+.++ |+-.++. .......+ ++-..| T Consensus 393 ~~a~~~~k~~--giis~et~~~~---~~~~~d~~~E~~ri~~E~~~~~~~~~~~~~~~~ 446 (453) T protein:vir:73 393 EQAETANILK--GITSEETALSV---ISVIPDVQAEMEKIKKKKLLQLSLTRTSNLVRM 446 (453) T ss_pred HHHHHHHHHh--ccCcHHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHHHHhccCCcc Confidence 6677776664 77776544443 344332 2211110 00000000 011111 No 189 >protein:vir:97336 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240606;genbank:gi:66396273;genbank:GeneID:5133692 Probab=97.57 E-value=4.3e-05 Score=44.50 Aligned_cols=366 Identities=11% Similarity=0.009 Sum_probs=155.3 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhh-hh---ccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeec Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIM-ES---LLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEK 76 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~ 76 (392) ++..+.+....+...- .....++. +.. .+. .. ..........+..-+.++-..-+|+..+.-+-.-|++..- T Consensus 48 ~i~~~i~~~~~~~~r~--~~l~~YY~-g~~-~i~~~~~~~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl~g~p~~~~~ 123 (492) T protein:vir:97 48 MIVRYIKQHLEKLPEI--SIGQEYYE-QRP-DIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKH 123 (492) T ss_pred HHHHHHHHHHHHHHHH--HHHHHHhc-ccC-ccccccccccccccccccccccccccchHHHHHHHHhhhhcccCceecc Confidence 2222221111110000 00000100 000 000 00 0000000000111122344555677777666556665432 Q ss_pred chh--hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCC-Cc-eEEEEEEecCC Q lcl|Aclame:pro 77 KKN--QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEY-EN-GMYYNITFDDP 152 (392) Q Consensus 77 ~~~--~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~-~~-~~~~~~~~~~~ 152 (392) .+. ...+..=..+ ........+..+++.+|.||.++..+.+|++. +..++|..+.+..+.. .+ ..+....+... T Consensus 124 ~d~~~~~~l~~~~~n-~~~~~~~~~~~~~~~~G~a~~~v~~d~dg~~~-~~~~~p~~~~~i~d~~~~~~~~~~vr~~~~~ 201 (492) T protein:vir:97 124 TDDEVVKRIDEVLGN-RFDDKLHSVLTGASNKGIEWLHPYLDEEGEFK-LFRVPAEQGIPIWTDKEHEELEAFIRMYKLE 201 (492) T ss_pred CchHHHHHHHHHHhc-cHHHHHHHHHHHHhhcCeEEEEEEecCCCceE-EEEEcccceEEEEcCCCCCceEEEEEEEeec Confidence 221 1111110001 22344456778889999999999998888754 7778999988887642 22 22211111111 Q ss_pred cceeeEEEecce-----------------------------------EEEecCCCccccccCCCHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 153 KIEPILQAPQSD-----------------------------------LIHMKLLSIDGGKTGISPLYSLRRESKIQRASD 197 (392) Q Consensus 153 ~~~~~~~~~~~~-----------------------------------vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~ 197 (392) .......+.... |++++++ ..|.|-+..+...++....+. T Consensus 202 ~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn-----~~g~sd~e~v~~liDa~d~~~ 276 (492) T protein:vir:97 202 NETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNN-----DLEISDIFMYKTLIDAYNRRL 276 (492) T ss_pred cceeEEEEecCeEEEEEEecCeeeecccccccccccccccCCCCCcceEEecCC-----CCCCCchHhHHHHHHHHHHHH Confidence 111111122222 2222221 247788888888888777776 Q ss_pred HHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 198 RLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAK 277 (392) Q Consensus 198 ~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~ 277 (392) .-..+.++..+.|-.+++--.... ..+..... ...+++.++++.+.+-+.....+..+....+...+.|+. T Consensus 277 S~~~~~~~~~~~~~l~~~g~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~I~~ 347 (492) T protein:vir:97 277 SDLSNTFKDSNELTYVLKNYDDQE-LPEFKRLL--------RYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIML 347 (492) T ss_pred HHHHHHHHHhccceeeeecCCccc-chhHHHHH--------hhccceecCCCCcceeEeccCCHHHHHHHHHHHHHHHHH Confidence 666666676666766655321111 11111111 112244455554444444443445566777888888888 Q ss_pred HhcccHHHcCCcccccchHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhh-hhhccchhhhhhcChHHHH Q lcl|Aclame:pro 278 VYGLPDSYIGGQGDQQSSIQQISGM--------------YASALNRYLRPAISELEYKLS-DHISVNMRPAIDPLGDNYL 342 (392) Q Consensus 278 ~fgVP~~~lg~~~~~~~~~~~~~~~--------------~~~~l~p~l~~i~~~l~~~l~-~~~~~d~~~~~~~~~~~~~ 342 (392) .-++|..-.+..+ ++.+..+.+.. +...+...++.|...+..+-. ..+.+.+..-+..+..+.+ T Consensus 348 ~s~~p~~~~~~~~-~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~i~v~f~~~~p~~~~e~a 426 (492) T protein:vir:97 348 FGQAVDFSSDKFG-SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQV 426 (492) T ss_pred HhCCCCCCccccc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeEEecCCCCCCHHHHH Confidence 8888865443211 12222333222 222222222222222211100 1122222222223455566 Q ss_pred HHHHHHHhCCccCHHHHHHHHHhCCCCCc---ccccc--------cCCCCCCCCCCCCCCC Q lcl|Aclame:pro 343 STISTATRWGALAENQATFVLQEAGYIPK---DLPAP--------ENTNKKTTGQSNEPVP 392 (392) Q Consensus 343 ~~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~~--------~~~~~~~~gd~~~p~p 392 (392) ..+.++ .|+++..-+.+++ |+..+ |+.++ ...+...+++.+..-+ T Consensus 427 ~~~~kl--~G~iS~et~l~~l---~~v~d~~~Eleri~~E~~~~~~~~~~~~~~~~~~~~~ 482 (492) T protein:vir:97 427 QTAQQS--MGIVSHETVLENH---PFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQ 482 (492) T ss_pred HHHHHH--hccCchHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHhhhccccCCCCCCcc Confidence 666665 5788876655443 44332 22111 1222222222222111 No 190 >protein:vir:106639 Length: 481 # NCBI annotation: ORF003 # Family: family:all:125 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239490;genbank:gi:66395218;genbank:GeneID:4555793 Probab=97.54 E-value=4.7e-05 Score=44.29 Aligned_cols=381 Identities=10% Similarity=0.053 Sum_probs=153.3 Q ss_pred Ccchhh-hhhcccccc--cccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeec- Q lcl|Aclame:pro 1 MILPIL-NFINQTNDP--PEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEK- 76 (392) Q Consensus 1 m~Mg~~-n~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~- 76 (392) |-...+ +++...... +.-.....++... ...+...-.......-.+...+.++-...+|+..+.-+-.-|+...- T Consensus 30 ~~~~~i~~~i~~~~~~~~~~~~~~~~yY~g~-~~~i~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~ 108 (481) T protein:vir:10 30 LKEENLRNFISRHQTEQVPRLEMLESYYLNR-NTDILAGERRLQKYGDKADHRAVHNYAKYVSRFIVGYLTGNPITITHQ 108 (481) T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcccccCccccccccccccceeecchHHHHHHHHHhhhccCCceEecC Confidence 111111 122211000 0000000000000 00000000000000000011123344566777777766666665432 Q ss_pred -chhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCc--eEEE--EEEecC Q lcl|Aclame:pro 77 -KKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYEN--GMYY--NITFDD 151 (392) Q Consensus 77 -~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~--~~~~--~~~~~~ 151 (392) ......+..-........+...+..+.+.+|.+|+.+..+.+|++ .+..++|..+.+..+.... .... ++...+ T Consensus 109 d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~~~~d~dg~~-~i~~~~p~~~~~v~d~~~~~~~~~~i~~~~~~~ 187 (481) T protein:vir:10 109 DNQTNDKIIELNDLNDADEVNSDLALNLSIYGRAYEIVYRDFEDRD-TFKVLDPKSTFVVYDQTLDKKVVAGVRYFEKQD 187 (481) T ss_pred ChhHHHHHHHHHHhcChhHHHHHHHHHHHhcCeEEEEEEeCCCCeE-EEEEEcccceEEEEcCCCCCceEEEEEEEEEee Confidence 222222222222234556778888899999999999999888876 4778899988887765432 1111 111111 Q ss_pred Cc---ceeeEEEecceEEEecCCC-----------c---------cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccC Q lcl|Aclame:pro 152 PK---IEPILQAPQSDLIHMKLLS-----------I---------DGGKTGISPLYSLRRESKIQRASDRLTISSLNSSL 208 (392) Q Consensus 152 ~~---~~~~~~~~~~~vih~~~~~-----------~---------~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~ 208 (392) .. ......+.++.+.|+.... + .+...|.|-+..+...++.......-..+.++-.+ T Consensus 188 ~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~~~~~~v~~lida~~~~~s~~~~~~~~~~ 267 (481) T protein:vir:10 188 KDKVPVQHVEVYTTDKIYYIEIKGGTYHRVEEVEHYYNDVPIIEYLNDQFKQGDFENVIALIDLYDSAQSDTANYMTDLN 267 (481) T ss_pred CCCceEEEEEEEecCeEEEEEecCCceeecccccccCCceeEEEeecCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhc Confidence 10 0111123333333332110 0 01124677777777777666555444444555555 Q ss_pred CcceEEeeCCCCCchHHHHHHHHH--HHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHc Q lcl|Aclame:pro 209 NVPGVLTVKGGGLLSDKDKASRSR--SFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYI 286 (392) Q Consensus 209 ~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~l 286 (392) .|-.++.-......++ ...+.. ....... ......+++.+++-+........+.+..+...+.|+..-++|.... T Consensus 268 ~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~ 344 (481) T protein:vir:10 268 DAMLAIIGNVDLDSED--AKAFRDANMIHLEPG-TNANGSEGKAEVKYVYKQYDVAGVEAYKKRLQNDIHKYTNTPDLND 344 (481) T ss_pred CceeEeecCcCCCccc--hhhhhhccceecccc-ccccCCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccc Confidence 5666654321111111 111111 0011000 0011112333444444333445567778888899999999998766 Q ss_pred CCcccccchHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhh-----hhccchhhhhhcChHHHHHHHHH Q lcl|Aclame:pro 287 GGQGDQQSSIQQISGM--------------YASALNRYLRPAISELEYKLSD-----HISVNMRPAIDPLGDNYLSTIST 347 (392) Q Consensus 287 g~~~~~~~~~~~~~~~--------------~~~~l~p~l~~i~~~l~~~l~~-----~~~~d~~~~~~~~~~~~~~~~~~ 347 (392) +..+. +.+..+.+.. +...+.-.++.+...++..-.. .+.+.+..-+..+..+.+..+.+ T Consensus 345 ~~~~~-n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~v~f~~~~~~~~~~~a~~~~k 423 (481) T protein:vir:10 345 EQFSG-VQSGESMKYKLFGLEQVRAIKERLFKKGLMKRYKLLLNNVNLTGLKQHNYAELTITFTPNLPKSMMESINAFNA 423 (481) T ss_pred ccccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccceeeEEeCCCCCcCHHHHHHHHHH Confidence 54322 2222222221 1111111111111111111000 12222222223345556666666 Q ss_pred HHhCCccCHHHHHHHHHhCCCCCc---cccccc--------CCCC----CCCCCCCCCCC Q lcl|Aclame:pro 348 ATRWGALAENQATFVLQEAGYIPK---DLPAPE--------NTNK----KTTGQSNEPVP 392 (392) Q Consensus 348 ~~~~g~~t~nE~R~~l~~~g~~~~---e~~~~~--------~~~~----~~~gd~~~p~p 392 (392) + .|+++...+.+++ |+..+ |+..+. ...+ ..+.+.+++-. T Consensus 424 l--~g~is~et~~~~l---~~i~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~dd 478 (481) T protein:vir:10 424 L--SGGVSESTRLSLL---DFIDNPKEELEKMQEEEAQREKQADKRGYGEAFENHLNVDD 478 (481) T ss_pred H--hccCChHHHHHhC---CCCCCHHHHHHHHHHHHHHHHhhhhhccCCccCCCCCCCCC Confidence 5 4777765544433 43322 211110 0000 00000000111 No 191 >protein:vir:4782 Length: 522 # NCBI annotation: putative minor capsid protein 1 # Family: family:all:898 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150162;swissprot:trembl:q94m49;genbank:gi:26553451;uniprot:Q94M49;genbank:GeneID:955983 Probab=97.50 E-value=5.4e-05 Score=43.97 Aligned_cols=381 Identities=9% Similarity=0.025 Sum_probs=163.3 Q ss_pred chhhh----hhccccccccccccccc-------ccCcchhhh---hhhccCCCC--------cccchhhhhcchHHHHHH Q lcl|Aclame:pro 3 LPILN----FINQTNDPPEAGSVQSY-------FPDGNDAQI---MESLLGDNN--------EWVSARAALRNSDLFSII 60 (392) Q Consensus 3 Mg~~n----~~~~~~~~~~~~~~~~~-------~~~~~~~~~---~~~~~~~~~--------~~~~~~~al~~~~v~~~i 60 (392) ||+|. ||++............- ........+ ..++.+... .....+..+.......++ T Consensus 1 m~~~~~~k~~~~k~~~~~~~~~~~~i~~~~~i~~~~~~~~~i~~~~~~y~g~~~~~~~~~~~~~~~~~~~~slnl~~~i~ 80 (522) T protein:vir:47 1 MSLFQKVKDFFSRGRYYMQTSNLNSILEHPKIAVTQEEYDRIKRNLVYYQSKWDDVQYKNTDGDIKSRPMNHLPIARTAS 80 (522) T ss_pred CchHHHHHHHHHHHHHHhhcccchhccccCCCCCCHHHHHHHHHHHHHhcCCcccccccccCcchhcccceecchHHHHH Confidence 88774 55543322111111110 011111111 112111100 000111222223344555 Q ss_pred HHHHHhhhhCceee--ecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecC Q lcl|Aclame:pro 61 LQLSSDLAIVKINA--EKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFE 138 (392) Q Consensus 61 ~~ia~~ia~lp~~~--~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~ 138 (392) +.+|+-|..=|..+ -+......+.+=-..-......+..+...+..|.+++.+..+. |. +.+..+++..+-+.... T Consensus 81 ~~~A~lv~~e~~~i~v~d~~~~~~l~~~l~~n~f~~~~~~~~e~a~a~G~~a~k~~~d~-~~-~~i~~v~ad~~~P~~~~ 158 (522) T protein:vir:47 81 KKIASLVYNEQATITTKNEILQKFLDDMLTNDRFNKNFERYLESCLALGGLAMRPYIDG-DK-VRVAFIQAPVFFPLESN 158 (522) T ss_pred HHHhhhhcCCcceeecCChHHHHHHHHHHhhcchHHHHHHHHHHhhccCCEEEEEEEcC-Cc-eEEEEEcCCceEEEEEc Confidence 56666554433332 2222222221111111223333444455555666666655442 32 23444455444432111 Q ss_pred CCc-----------------eEEEE-----------------------EEe-----cC---CcceeeE------------ Q lcl|Aclame:pro 139 YEN-----------------GMYYN-----------------------ITF-----DD---PKIEPIL------------ 158 (392) Q Consensus 139 ~~~-----------------~~~~~-----------------------~~~-----~~---~~~~~~~------------ 158 (392) ..+ ..+|. +++ .. ...|..+ T Consensus 159 ~~~~~e~a~~~~~~~~~~~~~~~yt~lE~he~~~~~~~~~~~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e~~~l~ 238 (522) T protein:vir:47 159 TQDVSSAAILTKTIKSEGRKNVYYTLVEFHEWVTADGQETGSTNDKKYYRITNELYRSDVNDVLGQRVNLSELDKYKNLE 238 (522) T ss_pred CCceEEEEEEEEEEeecccceeEEEEEEEeeecccccccccccccCCceEEEEEEeecCCCcccCccccccccccccCCC Confidence 110 00110 000 00 0001100 Q ss_pred ---EEe---cceEEEecCCCcc----ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceE----EeeCCCCCchH Q lcl|Aclame:pro 159 ---QAP---QSDLIHMKLLSID----GGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGV----LTVKGGGLLSD 224 (392) Q Consensus 159 ---~~~---~~~vih~~~~~~~----~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i----~~~~~~~~~~~ 224 (392) .++ .--+.||+.+.++ +...|+|.+..+...++..+........-++-|-..-.+ ++........+ T Consensus 239 ~~~~~~~~~~Plf~y~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~~g~ 318 (522) T protein:vir:47 239 PVTVFENLSRPLFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINRSYDEFMWEVRMGQRRVIVPEHLTQRQYQRPDGT 318 (522) T ss_pred CceEeCCCCcceEEEecCCcccccccCCCcCCchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCCCCcc Confidence 000 0112355433211 335699999999999988887776666666655432111 22211111110 Q ss_pred -HHHHHH---HHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHH- Q lcl|Aclame:pro 225 -KDKASR---SRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQI- 299 (392) Q Consensus 225 -~~~~~~---~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~- 299 (392) .....+ .+-|... +. -.+++-+++.++....+-++.+..+...+.|+...|+++..+|...+...+.... T Consensus 319 ~~~~~~fd~~~~~f~~~-~~----~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~i~~~~gls~~tf~~~~~~~kTAtEi~ 393 (522) T protein:vir:47 319 IDFRPRFDVEQNVYMQI-GG----SSMDAGGITDLTSPIRANDYILAISEGLKLFEMQIGVSSGMFTFDGQGMKTATEIV 393 (522) T ss_pred cccccccCcccceEeec-CC----CCCCCCcceeeccccChHHHHHHHHHHHHHHHHHhCCCccccCccccccccHHHHH Confidence 000000 0111111 00 0123445778888888889999999999999999999999998644432222111 Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHH-Hhh-------hhhccchhhhhhcChHHHHHHHHHHHhCCccCHHH Q lcl|Aclame:pro 300 -------------SGMYASALNRYLRPAISELEY-KLS-------DHISVNMRPAIDPLGDNYLSTISTATRWGALAENQ 358 (392) Q Consensus 300 -------------~~~~~~~l~p~l~~i~~~l~~-~l~-------~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE 358 (392) +..++.+|..++..+.+-.+. .+. ..+.+++..-+..|.++.......++.+|++++-+ T Consensus 394 s~~~~~~~t~~~~~~~~~~al~~lv~~i~~l~~~~~~~~~~~~~~~~i~v~f~D~i~~D~~~~~~~~~~~v~aG~~s~e~ 473 (522) T protein:vir:47 394 SENSDTYQMRSSIVALVEQSIKELCVSMCELGKAVGVYSGEIPELDDISVNLDDGVFTDRHAELDYWAKMVAAGFSTKKR 473 (522) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEEcCCCCCCCHHHHHHHHHHHHhcCCCCHHH Confidence 122233333333333322211 010 11334455555667788888888999999999998 Q ss_pred HHHHHHhCCCCCcc----ccccc--CC---C---CCCCCCCCCCCC Q lcl|Aclame:pro 359 ATFVLQEAGYIPKD----LPAPE--NT---N---KKTTGQSNEPVP 392 (392) Q Consensus 359 ~R~~l~~~g~~~~e----~~~~~--~~---~---~~~~gd~~~p~p 392 (392) ++..+ .|+...+ ++++. +. + ..-+|..++.-| T Consensus 474 ~i~~~--~g~~eeea~~el~ri~~E~~~~~~~~~~~~~~~~~~~~~ 517 (522) T protein:vir:47 474 AIGKT--LNISGVEAEKELNAINSELLPMNDAELAIYGMHDQNEEK 517 (522) T ss_pred HHHhc--CCCChHHHHHHHHHHHHhhccCCCCCCCCCCCCCccccc Confidence 87543 4554332 22211 10 1 111222222233 No 192 >protein:vir:79043 Length: 479 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110721;genbank:gi:134287338;genbank:GeneID:4955217 Probab=97.50 E-value=5.5e-05 Score=43.95 Aligned_cols=368 Identities=11% Similarity=0.033 Sum_probs=160.1 Q ss_pred Ccchh-------------hhhhccc---ccccccccccccccCcchhhhhhhccC-CCCcccc----hhhhhcchHHHHH Q lcl|Aclame:pro 1 MILPI-------------LNFINQT---NDPPEAGSVQSYFPDGNDAQIMESLLG-DNNEWVS----ARAALRNSDLFSI 59 (392) Q Consensus 1 m~Mg~-------------~n~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~al~~~~v~~~ 59 (392) |.-.+ ..++... ...+.-.....++.. ...-....... ....... +..-+.++-.... T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g-~~~i~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~~I 85 (479) T protein:vir:79 7 SETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYG-NTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLL 85 (479) T ss_pred cccceEeeccccCChhHHHHHHHHHHhhhhHHHHHHHHHHhcc-CCcccccccccccccccccccccCcceeecchHHHH Confidence 11111 1112111 110000011111110 00000000000 0000000 0111223445556 Q ss_pred HHHHHHhhhhCceeeecch--hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeec Q lcl|Aclame:pro 60 ILQLSSDLAIVKINAEKKK--NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYF 137 (392) Q Consensus 60 i~~ia~~ia~lp~~~~~~~--~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~ 137 (392) ++..+.-+-.-|+.+.-.+ ....+..=..+ ........+....+.+|.+|.++..+.+|++. +..++|..+.+..+ T Consensus 86 vd~~~~~l~g~p~~~~~~~~~~~~~~~~~~~n-~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~-i~~~~p~~~~~v~d 163 (479) T protein:vir:79 86 VDQKVGYSVGNPIVFNADDDNLTKLLNDLLGE-EFDDTITELYLNASNKGVEWLHPYINRKGEFK-YVIIPAEEAIPIWD 163 (479) T ss_pred HHHHHhhhhcCCceeccCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcCeEEEEEEeCCCCceE-EEEEccceeEEEEe Confidence 7777766666676553221 11121111111 33444566777888999999999888888765 77788888887765 Q ss_pred CCCc--eEEE--EEEec--CC-cceeeEEEecce--------------------------------------------EE Q lcl|Aclame:pro 138 EYEN--GMYY--NITFD--DP-KIEPILQAPQSD--------------------------------------------LI 166 (392) Q Consensus 138 ~~~~--~~~~--~~~~~--~~-~~~~~~~~~~~~--------------------------------------------vi 166 (392) .... .... .|... .+ .......+..+. |+ T Consensus 164 ~~~~~~~~~~ir~y~~~~~~~~~~~~~e~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv 243 (479) T protein:vir:79 164 SKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFI 243 (479) T ss_pred CCCCCceEEEEEEEEEeecCCceEEEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccccCCCcccEE Confidence 4321 1111 11111 10 001111122222 33 Q ss_pred EecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeec Q lcl|Aclame:pro 167 HMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVL 246 (392) Q Consensus 167 h~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl 246 (392) +++++ ..|.|-+..+...++....+.....+.++..+.|-.+++--.... .++... ....++++.+ T Consensus 244 ~~~nn-----~~g~sd~~~v~~liDa~d~~~S~~~~~~~~~~~~~~v~~g~~~~~-~~~~~~--------~~~~~~~i~~ 309 (479) T protein:vir:79 244 PFKNN-----EKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTS-LQEFID--------NIRYYKSIKV 309 (479) T ss_pred EecCC-----CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCccc-cccchh--------hhhhccceec Confidence 33321 247788888888888777776666666777777766655321111 111111 1123345566 Q ss_pred cCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHH--------------HHHHHHHHHHHH Q lcl|Aclame:pro 247 DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQIS--------------GMYASALNRYLR 312 (392) Q Consensus 247 ~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~--------------~~~~~~l~p~l~ 312 (392) +++.+++-+.....+..+....+...+.|+..-++|..-.+..+ +.+..+.+ ..+...+...++ T Consensus 310 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~g--n~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~ 387 (479) T protein:vir:79 310 DGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTG--DKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLW 387 (479) T ss_pred CCCCcceEEeccCCHHHHHHHHHHHHHHHHHHhCcccccccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 66555555554444455566777778888888888865443321 22222222 223333333333 Q ss_pred HHHHHHHHHhhh-----hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCc---cccccc-C----C Q lcl|Aclame:pro 313 PAISELEYKLSD-----HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPK---DLPAPE-N----T 379 (392) Q Consensus 313 ~i~~~l~~~l~~-----~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~~~-~----~ 379 (392) .+...+..+-.. .+.+.+..-+..+..+.+..+.++ .|+++...+.+++ |+..+ |+..+. + . T Consensus 388 li~~~~~~~~~~~~~~~~i~i~f~~~~p~~~~~~a~~~~kl--~g~iS~et~l~~l---~~v~d~~~E~~ri~~E~~~~~ 462 (479) T protein:vir:79 388 FVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNH---PWVEDVNDELERLKKQEDTQK 462 (479) T ss_pred HHHHHHhccCCCccccccceEEeCCCCCcCHHHHHHHHHHH--hccCcHHHHHHhC---CCCCCHHHHHHHHHHHHHHHH Confidence 333333222111 122222222333455666666665 5788877665544 44332 221110 0 0 Q ss_pred C-CCCCCCCCCCCC Q lcl|Aclame:pro 380 N-KKTTGQSNEPVP 392 (392) Q Consensus 380 ~-~~~~gd~~~p~p 392 (392) . ...-++..++.+ T Consensus 463 ~~~~~~~~~~~~~~ 476 (479) T protein:vir:79 463 EYDDLIPNNQDGVI 476 (479) T ss_pred HHHhccCcccCCCc Confidence 0 000111222222 No 193 >protein:vir:8184 Length: 474 # NCBI annotation: gp4 # Family: family:all:524 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817977;genbank:gi:29566411;genbank:GeneID:2700965 Probab=97.50 E-value=5.5e-05 Score=43.94 Aligned_cols=374 Identities=10% Similarity=0.012 Sum_probs=145.9 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhh---hhcchHHHHHHHHHHHhhhhCceeeecc Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARA---ALRNSDLFSIILQLSSDLAIVKINAEKK 77 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---al~~~~v~~~i~~ia~~ia~lp~~~~~~ 77 (392) .+=.|+..+.+....- .....++ .+... .. .-+..+.++- ........-||+.++..+---.|.+-+. T Consensus 19 ~~~~L~~~~~~~~~~~--~~~~~Yy-~G~~~--~~----~~~~~~p~~~r~~~~v~nw~~~~Vd~~a~rl~~~Gf~~~d~ 89 (474) T protein:vir:81 19 LINGLLAQIENLRWKN--LLRTSYY-ENKRT--IQ----YVGTLIPPQYFNLGLVLGWTGKAVDALARRCNLEGFVWPDG 89 (474) T ss_pred HHHHHHHHHHHHhhHH--HHHHHHh-ccCCC--hh----hccccccHHHHHHHhhcChHHHHHHHHHhhhcccceECCCC Confidence 1111111111110000 0000000 00000 00 0000011110 0001112334444444332223332221 Q ss_pred hhh-hhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCce-eEEEEeccccceeeecCCCceEEEEEE---ec-C Q lcl|Aclame:pro 78 KNQ-GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGAD-MKWEYLRPSQVNTYYFEYENGMYYNIT---FD-D 151 (392) Q Consensus 78 ~~~-~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~-~~l~~l~~~~v~~~~~~~~~~~~~~~~---~~-~ 151 (392) +.. .-+.+-...-........+..+.+.||.+|+.+....+|.+ ..+.+++|..+...+|...+.+...+. .+ + T Consensus 90 ~~~~~~l~~iw~~N~ld~~~~~~~~~al~~G~sf~~V~~~~d~~~~~~i~~~sp~~~~~~~D~~~~~~~~al~~~~~~~~ 169 (474) T protein:vir:81 90 DLDSLGGTEVVDDNHLLSEIDSAIVAAMQHGPAFLINTVGEDDEPEALIHVKDASEATGEWNRRRRGLNNLLSIIDKDKE 169 (474) T ss_pred CccchHHHHHHHhcChhHHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEeccceEEEEEeCCCCcceeeeEEEEEcCC Confidence 111 10111111112234455677788999999999998777765 456789999888877665443222111 00 0 Q ss_pred CcceeeEEEecc-------------------------eEEEecCCCccccccCCCHH----HHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 152 PKIEPILQAPQS-------------------------DLIHMKLLSIDGGKTGISPL----YSLRRESKIQRASDRLTIS 202 (392) Q Consensus 152 ~~~~~~~~~~~~-------------------------~vih~~~~~~~~~~~G~s~l----~~~~~~i~~~~~~~~~~~~ 202 (392) +.......+.++ .|+++.+...-+...|.|.+ ..+.+.+.....-...... T Consensus 170 g~~~~~~ly~~~~~~~~~~~~~~~~w~~~~~~~~~gvPvV~~~n~~~~~~~~G~s~i~e~v~~l~da~~r~~~~~~~~~e 249 (474) T protein:vir:81 170 GKVLSLALYLDNETVTAQRDKATLKWQVDRDEHVYGVPAQVLPYKPAPKRPFGQSRITKPMMGLQDAGVRELARREGHMD 249 (474) T ss_pred CcEEEEEEEeCCcEEEEEEcCccceeeeccCCCCCCcceEEecccccccCcCCccccchhHHHHHHHHHHHHHHHHHHHH Confidence 000000111111 23444433222333576644 3333333322222222333 Q ss_pred HHHccCCcceEEeeCCCC-CchHHH----HHH-HHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 203 SLNSSLNVPGVLTVKGGG-LLSDKD----KAS-RSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYA 276 (392) Q Consensus 203 ~~~ng~~~~~i~~~~~~~-~~~~~~----~~~-~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia 276 (392) |+.. ....++..+... ..++.. .+. ...-+.-..+..+-.....+.++.++..+.- .-|++..+..+..+| T Consensus 250 ~~a~--pqr~i~G~~~~~~~d~d~~~~~~~~~~~~~i~~~~~d~d~~~~~~~~~~~~q~~~a~l-~~~~~~l~~~~~~~a 326 (474) T protein:vir:81 250 VFSY--PEFWLLGADESALKNADGTIKSVWEARLGRIKGLPDDADADIPQLARADVKQFPAASP-DAHWSDINGLAKLFA 326 (474) T ss_pred Hhcc--hhheeecCChhhcccccccccchhhhhHHHHhcCCCcccccccccccccccccCCCCh-hHHHHHHHHHHHHHH Confidence 4332 123344333211 111111 111 1111111111111122223456666665432 237899999999999 Q ss_pred HHhcccHHHcCCcc-cccchHHHHHHHH---HHHHHHHHHHHHHHHHHHhh------hhh------------ccchhhhh Q lcl|Aclame:pro 277 KVYGLPDSYIGGQG-DQQSSIQQISGMY---ASALNRYLRPAISELEYKLS------DHI------------SVNMRPAI 334 (392) Q Consensus 277 ~~fgVP~~~lg~~~-~~~~~~~~~~~~~---~~~l~p~l~~i~~~l~~~l~------~~~------------~~d~~~~~ 334 (392) ..-|+|++.+|... .+.++.++.++-. .....-..+.+.+.+.+.+- ..+ +.-+.... T Consensus 327 ~~t~iP~~~lG~~~~~np~SaeAi~a~~~~l~~kae~k~~~fg~~l~~~~rla~~i~~~~~~~~~~~~~~~~~v~W~d~~ 406 (474) T protein:vir:81 327 REASLPDTAVAISGLSNPTSAESYDASQYELIAEAEGAVDDFTPALRKAFIRALAMKNKVAIDEIPDEWKSIDAKWRDPR 406 (474) T ss_pred hhhCCCHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccchhhccceeEecCCC Confidence 99999999999643 3334443433221 11122222223333322210 001 11111111 Q ss_pred hcChHHHHHHHHHHHhCCc--cCHHHHHHHHHhCCCCCccccccc-------------C-CCCCCCCCCCC Q lcl|Aclame:pro 335 DPLGDNYLSTISTATRWGA--LAENQATFVLQEAGYIPKDLPAPE-------------N-TNKKTTGQSNE 389 (392) Q Consensus 335 ~~~~~~~~~~~~~~~~~g~--~t~nE~R~~l~~~g~~~~e~~~~~-------------~-~~~~~~gd~~~ 389 (392) ..+....+..+.++.++|. ....-.++++ |+.+.++...+ . .....+|...| T Consensus 407 ~~s~a~~aDa~~Kl~~a~~~~~~~~~~~~~l---g~t~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~aq 474 (474) T protein:vir:81 407 YLSKSAQADAGMKQLAAVPWLAETEVGLELI---GLTPQQARRAMADKRRVQGRGTLQALIDRSNNGATAQ 474 (474) T ss_pred ccCHHHHHHHHHHHHhcccCCCcHHHHHhhc---CCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCC Confidence 2345566777778888763 3333345443 67665543211 1 12222222223 No 194 >protein:vir:1236 Length: 483 # NCBI annotation: similar to phage Spp1 gp6 (portal protein) # Family: family:all:125 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510935;genbank:gi:17426269;genbank:GeneID:927380 Probab=97.49 E-value=5.6e-05 Score=43.89 Aligned_cols=366 Identities=11% Similarity=0.015 Sum_probs=155.6 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhh-hh---ccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeec Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIM-ES---LLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEK 76 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~ 76 (392) ++-.+.+....+... -.....++. +.. .++ .. ..........+..-+.++-...+|+..+.-+-.-|+++.- T Consensus 39 ~i~~~i~~~~~~~~r--~~~l~~YY~-g~~-~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~~l~G~p~~~~~ 114 (483) T protein:vir:12 39 MIVRYIKQHLEKLPE--ISIGQEYYE-QRP-DIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKH 114 (483) T ss_pred HHHHHHHHHHHHHHH--HHHHHHHhc-ccc-ccccccccccccccccccccccccccchHHHHHHHHhhhhcccCceecc Confidence 222222111111000 000000000 000 000 00 0000000000111122344555677776666555665432 Q ss_pred chh--hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCC--CceEEEEEEecCC Q lcl|Aclame:pro 77 KKN--QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEY--ENGMYYNITFDDP 152 (392) Q Consensus 77 ~~~--~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~--~~~~~~~~~~~~~ 152 (392) .+. ...+..=..+ ........+..+.+.+|.+|+++..+.+|++. +..++|..+.+..+.. +...+....+... T Consensus 115 ~d~~~~~~l~~~~~n-~~~~~~~~~~~~~~~~G~~y~~v~~d~d~~~~-i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~ 192 (483) T protein:vir:12 115 TDDEVVKRIDEVLGN-RFDDKLHSVLTGASNKGIEWLHPYLDEEGEFK-LFRVPAEQGIPIWTDKEHEELEAFIRMYKLE 192 (483) T ss_pred CChHHHHHHHHHHhc-cHHHHHHHHHHHHhhCCeEEEEEEEcCCCceE-EEEEcccceEEEEcCCCCCceEEEEEEEEee Confidence 221 1111110001 22334455677888999999999999988764 7788999888876532 2222211111111 Q ss_pred cceeeEEEecceE-----------------------------------EEecCCCccccccCCCHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 153 KIEPILQAPQSDL-----------------------------------IHMKLLSIDGGKTGISPLYSLRRESKIQRASD 197 (392) Q Consensus 153 ~~~~~~~~~~~~v-----------------------------------ih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~ 197 (392) .......+....+ ++++. ...|.|-+..+...++..+.+. T Consensus 193 ~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----n~~g~sd~e~v~~liDa~d~~~ 267 (483) T protein:vir:12 193 NETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISDIFMYKTLIDAYNRRL 267 (483) T ss_pred cceEEEEEecCeEEEEEEeCCeeeecccccccccccccccCCCCccceEEecC-----CCCCCCchhhHHHHHHHHHHHH Confidence 1111111222222 22221 1247788888888887777766 Q ss_pred HHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 198 RLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAK 277 (392) Q Consensus 198 ~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~ 277 (392) ....+.++..+.|-.+++--.. ....+..... ...+++.++++.+.+-+.....+..+....+...+.|+. T Consensus 268 S~~~~~~~~~~~~~lv~~g~~~-~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~ 338 (483) T protein:vir:12 268 SDLSNTFKDSNELTYVLTNYDD-QELPEFKRLL--------RYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIML 338 (483) T ss_pred HHHHHHHHHhcCceeeeecCCc-ccchhHHHhh--------hhccccccCCCCcceEEeecCCHHHHHHHHHHHHHHHHH Confidence 6666666666677666553211 1111111111 112234444444444444444445566777778888888 Q ss_pred HhcccHHHcCCcccccchHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhh-hhhccchhhhhhcChHHHH Q lcl|Aclame:pro 278 VYGLPDSYIGGQGDQQSSIQQISG--------------MYASALNRYLRPAISELEYKLS-DHISVNMRPAIDPLGDNYL 342 (392) Q Consensus 278 ~fgVP~~~lg~~~~~~~~~~~~~~--------------~~~~~l~p~l~~i~~~l~~~l~-~~~~~d~~~~~~~~~~~~~ 342 (392) .-++|..-.+..+ ++.+..+.+. .+...+...++.+.+.+..+-. ..+.+.+..-+..+..+.+ T Consensus 339 ~s~~p~~~~~~~~-~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~li~~~~~~~~~~~~i~v~f~~~~p~~~~~~a 417 (483) T protein:vir:12 339 FGQAVDFSSDKFG-SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQV 417 (483) T ss_pred HhCCCCCCccccc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccceeeEEeCCCCCCCHHHHH Confidence 8888865443211 1222222222 2222233333333222211110 1122222223334556666 Q ss_pred HHHHHHHhCCccCHHHHHHHHHhCCCCCc---cccc--------ccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 343 STISTATRWGALAENQATFVLQEAGYIPK---DLPA--------PENTNKKTTGQSNEPVP 392 (392) Q Consensus 343 ~~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~--------~~~~~~~~~gd~~~p~p 392 (392) ..+.++ .|+++..-+.+++ |+..+ |+-+ ....+...++..+...+ T Consensus 418 ~~~~kl--~GiiS~et~~~~~---~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~d~~~~ 473 (483) T protein:vir:12 418 QTAQQS--MGIVSHETVLENH---PFVEDLQAELERIEQEQMEYNKQLPNLDDGGADGAQQ 473 (483) T ss_pred HHHHHH--hccCchHHHHHhC---CCCCCHHHHHHHHHHHHHHHHhhcccccccccCCccc Confidence 666666 5788876665543 44332 1111 11222222222221111 No 195 >protein:vir:96839 Length: 474 # NCBI annotation: ORF008 # Family: family:all:125 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240152;genbank:gi:66395815;genbank:GeneID:5133180 Probab=97.40 E-value=7.6e-05 Score=43.16 Aligned_cols=360 Identities=11% Similarity=0.035 Sum_probs=156.3 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhh-h---ccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeec Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIME-S---LLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEK 76 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~ 76 (392) ++=.+.+.++.+...- .....++. +.. .+.. . ..........+..-+.++-...+++..+.-+-.-|+...- T Consensus 30 ~i~~~i~~~~~~~~~~--~~~~~Yy~-g~~-~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~~l~g~p~~~~~ 105 (474) T protein:vir:96 30 MIIRLINDHKPKIDDI--TVGERYYN-HDP-DVLRLAPKLDNKGEIDPLKPDWRMFTNYHQNLVDQKVAYAVANPVTFSS 105 (474) T ss_pred HHHHHHHHHHHHHHHH--HHHHHHhc-cCC-cchhccchhcccccccccccchhcccchHHHHHHhhhhhhcccCceeec Confidence 2222222111100000 00000000 000 0000 0 0000000000111122344455666666666555655432 Q ss_pred ch--hh----hhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCC--CceEEEEEE Q lcl|Aclame:pro 77 KK--NQ----GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEY--ENGMYYNIT 148 (392) Q Consensus 77 ~~--~~----~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~--~~~~~~~~~ 148 (392) .+ .. .++. | ....-...+...+..+|.+|+.+..+.+|++. +..++|..+.+..+.. +........ T Consensus 106 ~d~~~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~~y~d~~~~~~-i~~~~p~~~~~v~d~~~~~~~~~~vr~ 179 (474) T protein:vir:96 106 DDDKSLKTIQEVLN--H---KWDDKLVDILTAASNKGIEWLQPYIDENGEFK-TFRVPAEQAIPIWTNKERDTLKAFIRY 179 (474) T ss_pred CchHHHHHHHHHHh--c---CHHHHHHHHHHHHHhcCeeEEEEEecCCCceE-EEEEcccceEEEEcCCCCCceEEEEEE Confidence 21 11 1222 1 22333455667788999999999888888765 7888999888887642 122111111 Q ss_pred ecCCcceeeEEEecce---------------------------------------EEEecCCCccccccCCCHHHHHHHH Q lcl|Aclame:pro 149 FDDPKIEPILQAPQSD---------------------------------------LIHMKLLSIDGGKTGISPLYSLRRE 189 (392) Q Consensus 149 ~~~~~~~~~~~~~~~~---------------------------------------vih~~~~~~~~~~~G~s~l~~~~~~ 189 (392) +..........+..+. +++++++ ..|.|-+...... T Consensus 180 ~~~~~~~~~~~yt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn-----~~g~sd~e~v~~l 254 (474) T protein:vir:96 180 YRLDGAERVEYWTDSDVTYYEYQDGILIPDYYHGEEHIQSHYYVGNKRVSWGRVPFIPFKNN-----PQEMSDLFMYKTI 254 (474) T ss_pred EeecCceEEEEEeCCeEEEEEecCCceeeccccccccccccccccccccCCCceeEEEeccC-----CCCCCcHHHHHHH Confidence 1111111111122222 2333221 2477888888888 Q ss_pred HHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeecc-CCceEEeccCChhhHHHHHHH Q lcl|Aclame:pro 190 SKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLD-DLEEFTALEIKSNVAQLLSQT 268 (392) Q Consensus 190 i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~-~g~~~~~l~~~~~d~~~~e~~ 268 (392) ++....+.....+.++..+.|-.+++--... ..+.... ....++++.++ +|.+++.++.......+.+.. T Consensus 255 iDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~-~~~~~~~--------~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 325 (474) T protein:vir:96 255 IDAMDKRLSDTQNTFDESTELIYILKGYEGQ-DLDEFMR--------NLKYYKAINVDGDGSGVDTIQIEVPVQSSKEYL 325 (474) T ss_pred HHHHHHHHHHHHHHHHHhccceeeeecCCcc-cccchhh--------hhhcCceEEecCCCCceeEEeecCChHHHHHHH Confidence 8887777766777777777776665532211 1111111 11123556654 455666665544445567777 Q ss_pred HHHHHHHHHHhcccHHHcCCcccccchHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhh-hhhccchhhh Q lcl|Aclame:pro 269 DWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGM--------------YASALNRYLRPAISELEYKLS-DHISVNMRPA 333 (392) Q Consensus 269 ~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~--------------~~~~l~p~l~~i~~~l~~~l~-~~~~~d~~~~ 333 (392) +...+.|+..-++|..-.+..+ ++.+..+.+.. +...+...++.|.+-+..... ..+.+.+. T Consensus 326 ~~l~~~i~~~s~~p~~~~~~~~-~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~~i~~~~~~~~~~~~i~i~f~-- 402 (474) T protein:vir:96 326 DMLRDYVIEFGQGVDFQQDKFG-NSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYKLNIKVQDVEITFN-- 402 (474) T ss_pred HHHHHHHHHHhCCccccccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEec-- Confidence 8888999999999876543222 22233333322 222222222222211110000 01111111 Q ss_pred hhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCc---ccccc--------cCCCCCCCCCCCCCCC Q lcl|Aclame:pro 334 IDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPK---DLPAP--------ENTNKKTTGQSNEPVP 392 (392) Q Consensus 334 ~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~~--------~~~~~~~~gd~~~p~p 392 (392) +..+....+.++.+.++|+++...+.+++ |+..+ |+-++ +..++. .++++.... T Consensus 403 -~~~p~~~~e~~~~~~~ag~iS~et~~~~~---~~v~d~~~E~~ri~~E~~e~~~~~~~~-~~~~~~~~~ 467 (474) T protein:vir:96 403 -FNVMVNELEQSQIGVQSQYLSKETVVTNH---PWVDDPVAELERIEQDNIDFNKQLPPL-EGDANGRAQ 467 (474) T ss_pred -cCCCcCHHHHHHHHHhcCCCchHHHHHhC---CCCCCHHHHHHHHHHHHHHHHhccccc-ccccccccC Confidence 12233344555667788999988777654 33222 11111 111111 111111111 No 196 >protein:vir:94805 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240531;genbank:gi:66396197;genbank:GeneID:5133585 Probab=97.34 E-value=9.1e-05 Score=42.73 Aligned_cols=367 Identities=9% Similarity=-0.012 Sum_probs=153.3 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhh-h---ccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeec Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIME-S---LLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEK 76 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~ 76 (392) ++..+.+........ -.....++. +.. .+.. . ..........+..-+.++-...+|+..+.-+-.-|++..- T Consensus 48 ~i~~~i~~~~~~~~r--~~~l~~YY~-g~~-~I~~~~~~~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl~G~p~~~~~ 123 (492) T protein:vir:94 48 MIVRYIKQHLEKLPE--ISIGQEYYE-QRP-DIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKH 123 (492) T ss_pred HHHHHHHHHHHHHHH--HHHHHHHhc-ccc-ccccccccccccccccccccccccccchHHHHHHHHHhhhcccCceecc Confidence 222222111110000 000001110 000 0000 0 0000000000111122344555677777666566665432 Q ss_pred ch--hh----hhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCC-Cc-eEEEEEE Q lcl|Aclame:pro 77 KK--NQ----GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEY-EN-GMYYNIT 148 (392) Q Consensus 77 ~~--~~----~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~-~~-~~~~~~~ 148 (392) .+ .. .++. | ........+..+.+.+|.+|+++..+.+|++. +..++|..+.+..+.. .+ ..+.... T Consensus 124 ~d~~~~~~l~~~~~--n---~~~~~~~~~~~~a~~~G~a~~~v~~d~dg~~~-~~~~~p~~~~~v~d~~~~~~~~a~ir~ 197 (492) T protein:vir:94 124 TDDEVVKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEFK-LFRVPAEQGIPIWTDKEHEELEAFIRM 197 (492) T ss_pred CchHHHHHHHHHHh--c---cHHHHHHHHHHHHhhCCeEEEEEEecCCCceE-EEEEcccceEEEEcCCCCCceEEEEEE Confidence 22 11 1221 2 23445566778889999999999988888764 7778998888876532 22 2221111 Q ss_pred ecCCcceeeEEEecceEEEecCC---------------------Ccc---------ccccCCCHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 149 FDDPKIEPILQAPQSDLIHMKLL---------------------SID---------GGKTGISPLYSLRRESKIQRASDR 198 (392) Q Consensus 149 ~~~~~~~~~~~~~~~~vih~~~~---------------------~~~---------~~~~G~s~l~~~~~~i~~~~~~~~ 198 (392) +..........+....+.++... .+. +...|.|-+..+...++..+.+.. T Consensus 198 ~~~~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~sd~e~v~~liDa~d~~~S 277 (492) T protein:vir:94 198 YKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLS 277 (492) T ss_pred EeeccceeEEEEecCeEEEEEEecCeeeeccccccccccccccccCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHH Confidence 11111111111122222222100 000 012478888888888888877776 Q ss_pred HHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 199 LTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKV 278 (392) Q Consensus 199 ~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~ 278 (392) -..+.++..+.|-.+++--.. ....+..... ...+++.++++.+.+-+........+....+...+.|+.. T Consensus 278 ~~~~~~~~~~~p~lv~~g~~~-~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~ 348 (492) T protein:vir:94 278 DLSNTFKDSNELTYVLKNYDD-QELPEFKRLL--------RYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLF 348 (492) T ss_pred HHHHHHHHhcCceeeeecCCc-ccchhhHHHH--------hhccceecCCCCcceeEeccCCHHHHHHHHHHHHHHHHHH Confidence 667777777777666553211 1111111111 1123444455444444433333344556667777788888 Q ss_pred hcccHHHcCCcccccchHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhh-hhhccchhhhhhcChHHHHH Q lcl|Aclame:pro 279 YGLPDSYIGGQGDQQSSIQQISGM--------------YASALNRYLRPAISELEYKLS-DHISVNMRPAIDPLGDNYLS 343 (392) Q Consensus 279 fgVP~~~lg~~~~~~~~~~~~~~~--------------~~~~l~p~l~~i~~~l~~~l~-~~~~~d~~~~~~~~~~~~~~ 343 (392) -++|..-.+..+ ++.+..+++.. +...+...++.+.+.+..+-. ..+.+.+..-+..+..+.+. T Consensus 349 s~~p~~~~~~~~-~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~~~~~i~v~f~~~~p~~~~e~~~ 427 (492) T protein:vir:94 349 GQAVDFSSDKFG-SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQ 427 (492) T ss_pred hCCcCCCccccc-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeEEecCCCCCCHHHHHH Confidence 887754332111 12222233221 222222222222222211100 11222222223334556666 Q ss_pred HHHHHHhCCccCHHHHHHHHHhCCCCCc---ccccc--------cCCCCCCCC-CCCCCCC Q lcl|Aclame:pro 344 TISTATRWGALAENQATFVLQEAGYIPK---DLPAP--------ENTNKKTTG-QSNEPVP 392 (392) Q Consensus 344 ~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~~--------~~~~~~~~g-d~~~p~p 392 (392) .+.++ .|+++..-+.+++ |+..+ |+-.+ ..++...++ ..+++.. T Consensus 428 ~~~kl--~giiS~et~~~~l---~~v~d~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~ 483 (492) T protein:vir:94 428 TAQQS--MGIVSHETVLENH---PFVEDLQAELERIEQEQMEYNKQLPNLDDGGADSAQQQ 483 (492) T ss_pred HHHHH--hccCchHHHHHhC---CCCCCHHHHHHHHHHHHHHHHhhccccccccCCCCccc Confidence 66665 4788876665544 44332 22111 112222111 1111111 No 197 >protein:vir:9871 Length: 429 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795633;genbank:gi:28876408;genbank:GeneID:1257942 Probab=97.33 E-value=9.3e-05 Score=42.70 Aligned_cols=361 Identities=10% Similarity=0.002 Sum_probs=162.8 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecch-- Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKK-- 78 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~-- 78 (392) ++..+.+.+......-. ....++. +.. .++....-.... ...-+.++-...+|+..+.-+-.-|+...-.+ T Consensus 5 ~l~~~i~~~~~~~~r~~--~l~~yy~-g~~-~il~~~~~~~~~---~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~~~~ 77 (429) T protein:vir:98 5 LLSELIQKHRSFNLSYS--AYKQLYE-GDH-AILQQKQKEQYK---PDNRLVVNFAKYIVDTFNGYFIGVPVQTSHENKQ 77 (429) T ss_pred HHHHHHHHHHHHHHHHH--HHHHHhc-ccc-ccccccccccCC---CcceeecchHHHHHHHHhhhhcccCceeecCChH Confidence 44444332222111000 0000110 000 000000000000 01112344556677777776666676643221 Q ss_pred hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCc--eEEE-EEEecCCcce Q lcl|Aclame:pro 79 NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYEN--GMYY-NITFDDPKIE 155 (392) Q Consensus 79 ~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~--~~~~-~~~~~~~~~~ 155 (392) ....+..-............+..+.+.+|.+|+++..+.+|++. +..++|..+.+..+.... ..+. .+........ T Consensus 78 ~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~-~~~~~p~~~~~v~dd~~~~~~~~~i~~~~~~~~~~ 156 (429) T protein:vir:98 78 VSNYLELLDGYNDQDDNNAELSKICSIYGHGYELVFNDENAEAG-ITYLTPLEAFIVYDDSIRQKPLFAVRYFYNKGGVL 156 (429) T ss_pred HHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEecCCCcEE-EEEEcccceEEEEeCCCCCceEEEEEEEEecCceE Confidence 22222222222234456677888899999999999999999764 677888888777654322 1211 1111111100 Q ss_pred eeE-------------------------EEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCc Q lcl|Aclame:pro 156 PIL-------------------------QAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNV 210 (392) Q Consensus 156 ~~~-------------------------~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~ 210 (392) ... .+..-.|+++++. ..|.|-+..+...++....+.....+.++..+.| T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~-----~~g~sd~e~v~~liD~~d~~~s~~~~~~~~~~~p 231 (429) T protein:vir:98 157 EGSYSDASNITYFKDGEKGIEIGESEPHPFDGVPMIEYVEN-----EERQSLLASVVTLINAFNKAISEKANDVEYFADA 231 (429) T ss_pred EEEEEeCceEEEEEecCCceEecccccccCCccceEEecCC-----CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCc Confidence 000 1112233443321 2578888888888888777776677667777777 Q ss_pred ceEEeeCCCCCchHHHHHHHHHHHhccccCCceeecc----CCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHc Q lcl|Aclame:pro 211 PGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLD----DLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYI 286 (392) Q Consensus 211 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~l 286 (392) -.+++--... ++... .. ..++++.++ ++.+.+.+........+.+..+...+.|+..-++|..-. T Consensus 232 ~~~i~g~~~~--~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~ 300 (429) T protein:vir:98 232 YLKILGAELD--DETLK-SL--------RDTRIINLKDTDAQQLTVEFLQKPDADATQEHLLDRLENLIFRTAMVANISD 300 (429) T ss_pred eeeeecCCCC--cchhh-hH--------hhCceeeccCCCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCc Confidence 7776632211 11111 11 111233332 223344444333333455667888889988888885433 Q ss_pred CCcccccchHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhh----hhhccchhhhhhcChHHHHHHHHHH Q lcl|Aclame:pro 287 GGQGDQQSSIQQISGMY--------------ASALNRYLRPAISELEYKLS----DHISVNMRPAIDPLGDNYLSTISTA 348 (392) Q Consensus 287 g~~~~~~~~~~~~~~~~--------------~~~l~p~l~~i~~~l~~~l~----~~~~~d~~~~~~~~~~~~~~~~~~~ 348 (392) +.. ++.+..+.+..+ ...+.-.++.+...++..-. ..+.+.+..-+..+..+.+..+.++ T Consensus 301 ~~~--gn~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~d~~~i~v~f~~~~p~~~~~~a~~~~kl 378 (429) T protein:vir:98 301 ESF--GTASGIALRYRLQAMDNLAKTKERKFMSGMNRRYKLIASYPTSKIGPKDWIGIKYKFTRNLPANLLEESQIAGNL 378 (429) T ss_pred ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccceEEeCCCCCcCHHHHHHHHHHH Confidence 221 222333333221 12222222222221111000 0122222222333455566666665 Q ss_pred HhCCccCHHHHHHHHHhCCCCCc---cccc--------ccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 349 TRWGALAENQATFVLQEAGYIPK---DLPA--------PENTNKKTTGQSNEPVP 392 (392) Q Consensus 349 ~~~g~~t~nE~R~~l~~~g~~~~---e~~~--------~~~~~~~~~gd~~~p~p 392 (392) +|+++..-+.++ .|+.++ |+.. .++......++.++..+ T Consensus 379 --~g~is~et~~~~---l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~ 428 (429) T protein:vir:98 379 --AGIVSEETQVGV---LSIVENPQKEIERKNSDKSTLISRQAGGLNGQNTTTIL 428 (429) T ss_pred --hccCchHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC Confidence 678887555444 355432 1111 11223334455555555 No 198 >protein:vir:95806 Length: 440 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950583;genbank:gi:119953778;genbank:GeneID:5076876 Probab=97.13 E-value=0.00016 Score=41.43 Aligned_cols=368 Identities=10% Similarity=-0.011 Sum_probs=157.9 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhh-hccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeee--cc Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIME-SLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAE--KK 77 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~--~~ 77 (392) |+-.|.+--+.+-. ....++-... ..+.. ......+.. ..-+.+.-..-.|+..+.-+-.-|+++. +. T Consensus 1 ~~~~~~~~~~~r~~-----~l~~yy~g~~-~~~~~~~~~~~~~~~---~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~~~ 71 (440) T protein:vir:95 1 MLAAFLGSQKQRLA-----ILASYAQGDN-FSILSGHRRLDDEKA---DYRVRHKWGGYISSFATGYVIGNPVSIGVMEG 71 (440) T ss_pred ChhhHHHHHHHHHH-----HHHHHhccCC-cccccccccccccCC---cceeecchHHHHHHhhhhheeccCceEeeCCC Confidence 44443321100000 0000110000 00000 000000000 0112223344455555555544455442 21 Q ss_pred hhh---hhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCc--eEEEEEEecCC Q lcl|Aclame:pro 78 KNQ---GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYEN--GMYYNITFDDP 152 (392) Q Consensus 78 ~~~---~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~--~~~~~~~~~~~ 152 (392) ... ..+.+-............+..+.+.+|.+|+++..+.+|++. +..++|..+.+..+.... ..+....+... T Consensus 72 ~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~~-i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~ 150 (440) T protein:vir:95 72 GSADQLSTIKDIEWQNDINALNSDLAFDASVYGRAYEYHFRDKDKVDR-VVLISPLEMFVIRDLTVEQNIIAAVHLPIYA 150 (440) T ss_pred ccHHHHHHHHHHHHhcCHhHHHHHHHHHHhhcCeEEEEEEecCCCceE-EEEEcccceEEEEcCCCCCceEEEEEEEEec Confidence 111 112111111233344556777888999999999998888764 677899999888776542 22211111111 Q ss_pred cceeeEEEecceE----------------------------EEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 153 KIEPILQAPQSDL----------------------------IHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSL 204 (392) Q Consensus 153 ~~~~~~~~~~~~v----------------------------ih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~ 204 (392) .......+..+.+ +++++ ...|.|-+..+...++..+.+.....+.. T Consensus 151 ~~~~~~vyt~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~sd~e~v~~lida~~~~~s~~~~~~ 225 (440) T protein:vir:95 151 DKVNMTVYTKDKVITYKPYSNNSVRLVVDDVKKHSYNDVPVVEWWN-----NRFRMGDYESEISLIDAYDAGQSDTANYM 225 (440) T ss_pred CceEEEEEeCCeEEEEEEecCCccceeecceeeccCceeeEEEeeC-----CCCCCCchhhhHHHHHHHHHHHHHHHHHH Confidence 1111112233333 33332 12477888888888877777766666666 Q ss_pred HccCCcceEEeeCCC-CCchHHHHHHHH-HHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhccc Q lcl|Aclame:pro 205 NSSLNVPGVLTVKGG-GLLSDKDKASRS-RSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLP 282 (392) Q Consensus 205 ~ng~~~~~i~~~~~~-~~~~~~~~~~~~-~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP 282 (392) +..+.|-.+++-... ....++...... ...............+++.+.+-+........+....+...+.|+..-++| T Consensus 226 ~~~~~~~~v~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~l~~~i~~~s~~p 305 (440) T protein:vir:95 226 SDLNDAMLLVKGDLDGIKLSPEDAAKMKDANMLFLKTGISTTGQQTTADASYIYKQYDVNGTEAYKNRLANDIHRFSRIP 305 (440) T ss_pred HHhhcceeeeecccccCCCCccchhhhhhccceecccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCc Confidence 777777666664221 111111111111 111111111111112333344444433334456677888889999999999 Q ss_pred HHHcCCcccccchHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhhh-----hhccchhhhhhcChHHHHH Q lcl|Aclame:pro 283 DSYIGGQGDQQSSIQQI--------------SGMYASALNRYLRPAISELEYKLSD-----HISVNMRPAIDPLGDNYLS 343 (392) Q Consensus 283 ~~~lg~~~~~~~~~~~~--------------~~~~~~~l~p~l~~i~~~l~~~l~~-----~~~~d~~~~~~~~~~~~~~ 343 (392) ..-.+..+.+ .+..+. +..+...+...++.+...+...-.. .+++.+..-...+..+.+. T Consensus 306 ~~~~~~~~~n-~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~v~i~f~~~~p~~~~~~ad 384 (440) T protein:vir:95 306 NLDDDRFNST-SSGIALLYKMIGLEQVRKDKETYFTKALRRRYELISNIHKAINGPVIEANKLTFTFHPNIPQDVWTEIK 384 (440) T ss_pred cccccccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccceEEeCCCCCCCHHHHHH Confidence 7655432211 122222 2223333333333333333222111 1222233333345566666 Q ss_pred HHHHHHhCCccCHHHHHHHHHhCCCCC--cccccc------------cCCCCCCC-CCCCC Q lcl|Aclame:pro 344 TISTATRWGALAENQATFVLQEAGYIP--KDLPAP------------ENTNKKTT-GQSNE 389 (392) Q Consensus 344 ~~~~~~~~g~~t~nE~R~~l~~~g~~~--~e~~~~------------~~~~~~~~-gd~~~ 389 (392) .+.++ .|+++..-+.++ .|+.. .|.-.+ +..+...+ |...| T Consensus 385 ~~~kl--~g~iS~et~~~~---l~~~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~e 440 (440) T protein:vir:95 385 AYIEA--GGEISQETLMEN---ASFTDYKTEHSRILKQGGSSDLEIGQIVGDADVGQADTE 440 (440) T ss_pred HHHHH--hccCcHHHHHHh---CCCCCcHHHHHHHHHHHHHhhhhHHhhccCCCCCCcCCC Confidence 66666 577876554443 34332 121110 01122233 33333 No 199 >protein:vir:99522 Length: 470 # NCBI annotation: putative protein # Family: family:all:125 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958533;genbank:gi:41179315;genbank:GeneID:2717160 Probab=97.12 E-value=0.00016 Score=41.37 Aligned_cols=372 Identities=8% Similarity=-0.022 Sum_probs=160.7 Q ss_pred chhhhhhccccccccccccc--ccccCcchhhh---------------hhhccCC------CCcccchhhhhcchHHHHH Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQ--SYFPDGNDAQI---------------MESLLGD------NNEWVSARAALRNSDLFSI 59 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~--~~~~~~~~~~~---------------~~~~~~~------~~~~~~~~~al~~~~v~~~ 59 (392) |..+|.=+-........... ..........+ .....+. .....-++.-+.++-...+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~l~~Yy~g~~~i~~~~~~~~~~~~ki~~n~~~~I 80 (470) T protein:vir:99 1 MKDINYGRDKVTGNSSFIFPKGEKLTSNELLGFIAYNETVLKPRYRENMKLYLGKHKILTAPEKETGADNRIVVNSAKYV 80 (470) T ss_pred CccccCCcccccCCceEEeCCCCCcCHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccCcccccCCcceeecchHHHH Confidence 55543221110000000000 00000000000 0000000 0000001111223344555 Q ss_pred HHHHHHhhhhCceeeecch---hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeee Q lcl|Aclame:pro 60 ILQLSSDLAIVKINAEKKK---NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYY 136 (392) Q Consensus 60 i~~ia~~ia~lp~~~~~~~---~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~ 136 (392) |+..+.-+-.-|++..-.+ ....+.+-............+....+.+|.+|+++..+.+|++ .+..++|..+.+.. T Consensus 81 vd~~~~~l~g~p~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~dg~~-~i~~~~p~~~~~i~ 159 (470) T protein:vir:99 81 VDVYNGYFCGIEPKLALLNDSSKIDEIARWNRQENFFDTINEISKQCDIFGRSIASIYQGEDARP-HLMYSSPNHAFIIY 159 (470) T ss_pred HHHHhhhhccCCeeEeeCCchhHHHHHHHHHHhcCHhHHHHHHHHHHHhcCeeEEEEEeCCCCeE-EEEEEccceeEEEE Confidence 6666665544565543221 1112222222335566677888899999999999999888886 47778999988877 Q ss_pred cCCCce--EE-EEEEecCCcce---eeEEEecceEEEecCC----------------------CccccccCCCHHHHHHH Q lcl|Aclame:pro 137 FEYENG--MY-YNITFDDPKIE---PILQAPQSDLIHMKLL----------------------SIDGGKTGISPLYSLRR 188 (392) Q Consensus 137 ~~~~~~--~~-~~~~~~~~~~~---~~~~~~~~~vih~~~~----------------------~~~~~~~G~s~l~~~~~ 188 (392) +..... .+ .++........ ....+..+.+.++... ...+...|.|-+..+.. T Consensus 160 d~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~ 239 (470) T protein:vir:99 160 DDTVQRQPLAFVHYQIDNSNNWTDAYGVIQYADKFYKFKGYDIEEDTNAAGYAINPYGLVPAVEFFENEERQGIFDSIKT 239 (470) T ss_pred cCCCCcceEEEEEEEEEecCCeeEEEEEEEecCeEEEEEecccccccccccccccCCCccceEeecCCCCCCcchHhHHH Confidence 664421 11 11111111000 0111222222222100 00012357888888888 Q ss_pred HHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH-HHHHHHHHHHhccccCCceeec-----cCCceEEeccCChhhH Q lcl|Aclame:pro 189 ESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD-KDKASRSRSFMKRSRSGGPVVL-----DDLEEFTALEIKSNVA 262 (392) Q Consensus 189 ~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~vl-----~~g~~~~~l~~~~~d~ 262 (392) .++....+.....+.++..+.|-.++.--.....++ +....+.. .+++.+ +++.+++.++...... T Consensus 240 liDa~~~~~s~~~~~~~~~~~~~~~i~g~~~~~~~~g~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~ 311 (470) T protein:vir:99 240 LINALDKVISQKANQVEYFDNAYMYMIGFKLPEDDEGNPKFDFKN--------NRVLYVSQLDPDTNPQIGFIAKPDADQ 311 (470) T ss_pred HHHHHHHHHHHHHHHHHHhcCceeeeecCCcccccccchhhhhhh--------cceeeecCCCCCCCCcceEEeecCChH Confidence 888777776666666777777766665422111111 11111110 122222 2344555555444445 Q ss_pred HHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhhh---- Q lcl|Aclame:pro 263 QLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISG--------------MYASALNRYLRPAISELEYKLSD---- 324 (392) Q Consensus 263 ~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~--------------~~~~~l~p~l~~i~~~l~~~l~~---- 324 (392) .+....+...+.|+..-++|....+..+. +.+..+.+. .+...|...++.+...+...-.. T Consensus 312 ~~~~~~~~l~~~i~~~s~~p~~~~~~~~~-n~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~ 390 (470) T protein:vir:99 312 MQENLIQHLTDFIFMMAMVPNIQDKNFAG-NSSGVALQYKLFAMKNKADSKERKFDKSLMQLYRIVLATLFNNKQDQELW 390 (470) T ss_pred HHHHHHHHHHHHHHHHhCCcccccccccc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccc Confidence 55667788889999999999765543222 222222222 22222222222222222211111 Q ss_pred -hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCC-CCc-cccccc------------CCCC-----CCC Q lcl|Aclame:pro 325 -HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGY-IPK-DLPAPE------------NTNK-----KTT 384 (392) Q Consensus 325 -~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~-~~~-e~~~~~------------~~~~-----~~~ 384 (392) .+.+.+..-+..+..+.+..+..+ .|+++...+.+++ |+ .|. |+-.++ ...+ ..+ T Consensus 391 ~~i~v~f~~~~p~~~~e~a~~~~kl--~giis~et~l~~l---~~vd~~~E~eri~~E~~~~~~~~~~~~~~~d~~~~d~ 465 (470) T protein:vir:99 391 SELDFKFTRNLPEDMASAIDNAKNA--EGIVSKKTQLGMI---PDIEPDAEMKQIAKEKADAIKQTQQLSMPIDILKRDN 465 (470) T ss_pred ccceEEeCCCCCcCHHHHHHHHHHH--hccCCHHHHHHhC---CCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCcCCCCC Confidence 122222223333455666666665 3788876655543 33 222 111110 0111 111 Q ss_pred CCCCC Q lcl|Aclame:pro 385 GQSNE 389 (392) Q Consensus 385 gd~~~ 389 (392) +++++ T Consensus 466 ~~ee~ 470 (470) T protein:vir:99 466 NAEEE 470 (470) T ss_pred CccCC Confidence 12222 No 200 >protein:vir:95899 Length: 474 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240382;genbank:gi:66396046;genbank:GeneID:5133410 Probab=96.83 E-value=0.00031 Score=39.82 Aligned_cols=371 Identities=10% Similarity=0.013 Sum_probs=155.6 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhc-cCCCCc--ccchhhhhcchHHHHHHHHHHHhhhhCceeeecc Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESL-LGDNNE--WVSARAALRNSDLFSIILQLSSDLAIVKINAEKK 77 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~ 77 (392) ++-.+.+....+...- .....++. +...-..... ....+. ..-+..-+.++-....++..+.-+-.-|+...-. T Consensus 31 ~i~~~i~~~~~~~~~~--~~l~~Yy~-g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~ 107 (474) T protein:vir:95 31 MIIRLINNHKQKLKDI--NVGQKYYD-KDNDINYQAYKQDLHGNIDYTKPDWRITTNFHQNLVDQKVSYVAGKPVTYAHD 107 (474) T ss_pred HHHHHHHHHHHHHHHH--HHHHHHhc-ccCccccccchhhhcccccccccccccccchHHHHHHhhhhhhcccCceeccC Confidence 3333332221110000 00000000 0000000000 000000 0000111122334455666666666666665322 Q ss_pred hh--hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCC-Cce-EEEEEEecCCc Q lcl|Aclame:pro 78 KN--QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEY-ENG-MYYNITFDDPK 153 (392) Q Consensus 78 ~~--~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~-~~~-~~~~~~~~~~~ 153 (392) +. ...+..=.. .........+..+++.+|.+|.++.++.+|.+ .+..++|..+-+..+.. .+. +.....+.... T Consensus 108 ~~~~~~~l~~~~~-n~~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~a~ir~~~~~~ 185 (474) T protein:vir:95 108 DDKVLDVIHQVLD-TRWDNKLIDILTAASNKGIDWLQVYINEDGEL-KLFRVPAEQAIPIWTDKEREQLNAFIRIFTFNG 185 (474) T ss_pred ChHHHHHHHHHHh-ccHHHHHHHHHHHHhhCCeEEEEeeeCCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEeecC Confidence 21 111110001 12444455677889999999999999888875 46778888888876542 122 11111111111 Q ss_pred ceeeEEEecceEEEecCCC---------------------c---------cccccCCCHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 154 IEPILQAPQSDLIHMKLLS---------------------I---------DGGKTGISPLYSLRRESKIQRASDRLTISS 203 (392) Q Consensus 154 ~~~~~~~~~~~vih~~~~~---------------------~---------~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~ 203 (392) ......+....+.++...+ . .+...|.|-+......++....+..-..+. T Consensus 186 ~~~~~vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~~~~d~e~v~~liDa~d~~~S~~~~~ 265 (474) T protein:vir:95 186 ETKVEYWTAETVTYYVYENGGLIPDFYYGDEHIQTHFSTGSWERVPFIAFKNNPEEVSDIWMYKSFVDAIDKRLSDVQNM 265 (474) T ss_pred eeEEEEEeCCeEEEEEEcCCceeeccccccccccCcccccCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHH Confidence 1111122233333322100 0 011347777877777777777666555666 Q ss_pred HHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccH Q lcl|Aclame:pro 204 LNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPD 283 (392) Q Consensus 204 ~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~ 283 (392) ++..+.|-.+++--.. ......... ....+++.++++.+.+-+.....+..+....+...+.|+..-++|. T Consensus 266 ~~~~~~p~lv~~g~~~-~~~~~~~~~--------~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~ 336 (474) T protein:vir:95 266 FDESVELIYILRGYEG-EDLSEFMEG--------LKYYKAINVSSDGGVETIQVEVPVASTKEYLDMMRAYIVEFGQGVD 336 (474) T ss_pred HHHhhcchhhhcCCCc-ccccchhhh--------hhccceeeccCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcC Confidence 6666666555442111 111111111 1123455566555555554444455566777778888999888886 Q ss_pred HHcCCcccccchHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhh-hhhccchhhhhhcChHHHHHHHHHH Q lcl|Aclame:pro 284 SYIGGQGDQQSSIQQISGM--------------YASALNRYLRPAISELEYKLS-DHISVNMRPAIDPLGDNYLSTISTA 348 (392) Q Consensus 284 ~~lg~~~~~~~~~~~~~~~--------------~~~~l~p~l~~i~~~l~~~l~-~~~~~d~~~~~~~~~~~~~~~~~~~ 348 (392) .-....+ ++.+..+.+.. +...+...++.|...+..... ..+.+.+. +..+....+.++.+ T Consensus 337 ~~~~~~~-~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~g~~~d~~~i~i~f~---~~~p~~~~e~a~~~ 412 (474) T protein:vir:95 337 FQTDKFG-SATSGIALKFLYTNLNLKANKLKNKANVALQELMQFILDFNKIKLDAKEIEITFN---FNVMVNDLEQSQIG 412 (474) T ss_pred ccccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEec---CCCccCHHHHHHHH Confidence 5432211 12222222221 222222222222221111100 01111111 22334455556666 Q ss_pred HhCCccCHHHHHHHHHhCCCCCc---ccccc--------cCCCCCCCCCC----CCCCC Q lcl|Aclame:pro 349 TRWGALAENQATFVLQEAGYIPK---DLPAP--------ENTNKKTTGQS----NEPVP 392 (392) Q Consensus 349 ~~~g~~t~nE~R~~l~~~g~~~~---e~~~~--------~~~~~~~~gd~----~~p~p 392 (392) .++|+++.--+.+++ |+..+ |+-.+ ..++...++.. ++--| T Consensus 413 ~~~giiS~et~~~~l---p~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (474) T protein:vir:95 413 AQSQYLSKETLVRHH---PWVDDPKAELERLDEEQLELNKQLPNLDDGGADGAQQQQQS 468 (474) T ss_pred HHcCCCChHHHHHhC---CCCCCHHHHHHHHHHHHHHHHhhccccccccCCCCCCcCCC Confidence 778999987766554 44332 11111 11222222111 11111 No 201 >protein:vir:96266 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240308;genbank:gi:66395972;genbank:GeneID:5133343 Probab=96.83 E-value=0.00031 Score=39.82 Aligned_cols=371 Identities=10% Similarity=0.013 Sum_probs=155.6 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhc-cCCCCc--ccchhhhhcchHHHHHHHHHHHhhhhCceeeecc Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESL-LGDNNE--WVSARAALRNSDLFSIILQLSSDLAIVKINAEKK 77 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~ 77 (392) ++-.+.+....+...- .....++. +...-..... ....+. ..-+..-+.++-....++..+.-+-.-|+...-. T Consensus 31 ~i~~~i~~~~~~~~~~--~~l~~Yy~-g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~ 107 (474) T protein:vir:96 31 MIIRLINNHKQKLKDI--NVGQKYYD-KDNDINYQAYKQDLHGNIDYTKPDWRITTNFHQNLVDQKVSYVAGKPVTYAHD 107 (474) T ss_pred HHHHHHHHHHHHHHHH--HHHHHHhc-ccCccccccchhhhcccccccccccccccchHHHHHHhhhhhhcccCceeccC Confidence 3333332221110000 00000000 0000000000 000000 0000111122334455666666666666665322 Q ss_pred hh--hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCC-Cce-EEEEEEecCCc Q lcl|Aclame:pro 78 KN--QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEY-ENG-MYYNITFDDPK 153 (392) Q Consensus 78 ~~--~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~-~~~-~~~~~~~~~~~ 153 (392) +. ...+..=.. .........+..+++.+|.+|.++.++.+|.+ .+..++|..+-+..+.. .+. +.....+.... T Consensus 108 ~~~~~~~l~~~~~-n~~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~a~ir~~~~~~ 185 (474) T protein:vir:96 108 DDKVLDVIHQVLD-TRWDNKLIDILTAASNKGIDWLQVYINEDGEL-KLFRVPAEQAIPIWTDKEREQLNAFIRIFTFNG 185 (474) T ss_pred ChHHHHHHHHHHh-ccHHHHHHHHHHHHhhCCeEEEEeeeCCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEeecC Confidence 21 111110001 12444455677889999999999999888875 46778888888876542 122 11111111111 Q ss_pred ceeeEEEecceEEEecCCC---------------------c---------cccccCCCHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 154 IEPILQAPQSDLIHMKLLS---------------------I---------DGGKTGISPLYSLRRESKIQRASDRLTISS 203 (392) Q Consensus 154 ~~~~~~~~~~~vih~~~~~---------------------~---------~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~ 203 (392) ......+....+.++...+ . .+...|.|-+......++....+..-..+. T Consensus 186 ~~~~~vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~~~~d~e~v~~liDa~d~~~S~~~~~ 265 (474) T protein:vir:96 186 ETKVEYWTAETVTYYVYENGGLIPDFYYGDEHIQTHFSTGSWERVPFIAFKNNPEEVSDIWMYKSFVDAIDKRLSDVQNM 265 (474) T ss_pred eeEEEEEeCCeEEEEEEcCCceeeccccccccccCcccccCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHH Confidence 1111122233333322100 0 011347777877777777777666555666 Q ss_pred HHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccH Q lcl|Aclame:pro 204 LNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPD 283 (392) Q Consensus 204 ~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~ 283 (392) ++..+.|-.+++--.. ......... ....+++.++++.+.+-+.....+..+....+...+.|+..-++|. T Consensus 266 ~~~~~~p~lv~~g~~~-~~~~~~~~~--------~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~ 336 (474) T protein:vir:96 266 FDESVELIYILRGYEG-EDLSEFMEG--------LKYYKAINVSSDGGVETIQVEVPVASTKEYLDMMRAYIVEFGQGVD 336 (474) T ss_pred HHHhhcchhhhcCCCc-ccccchhhh--------hhccceeeccCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcC Confidence 6666666555442111 111111111 1123455566555555554444455566777778888999888886 Q ss_pred HHcCCcccccchHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhh-hhhccchhhhhhcChHHHHHHHHHH Q lcl|Aclame:pro 284 SYIGGQGDQQSSIQQISGM--------------YASALNRYLRPAISELEYKLS-DHISVNMRPAIDPLGDNYLSTISTA 348 (392) Q Consensus 284 ~~lg~~~~~~~~~~~~~~~--------------~~~~l~p~l~~i~~~l~~~l~-~~~~~d~~~~~~~~~~~~~~~~~~~ 348 (392) .-....+ ++.+..+.+.. +...+...++.|...+..... ..+.+.+. +..+....+.++.+ T Consensus 337 ~~~~~~~-~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~g~~~d~~~i~i~f~---~~~p~~~~e~a~~~ 412 (474) T protein:vir:96 337 FQTDKFG-SATSGIALKFLYTNLNLKANKLKNKANVALQELMQFILDFNKIKLDAKEIEITFN---FNVMVNDLEQSQIG 412 (474) T ss_pred ccccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEec---CCCccCHHHHHHHH Confidence 5432211 12222222221 222222222222221111100 01111111 22334455556666 Q ss_pred HhCCccCHHHHHHHHHhCCCCCc---ccccc--------cCCCCCCCCCC----CCCCC Q lcl|Aclame:pro 349 TRWGALAENQATFVLQEAGYIPK---DLPAP--------ENTNKKTTGQS----NEPVP 392 (392) Q Consensus 349 ~~~g~~t~nE~R~~l~~~g~~~~---e~~~~--------~~~~~~~~gd~----~~p~p 392 (392) .++|+++.--+.+++ |+..+ |+-.+ ..++...++.. ++--| T Consensus 413 ~~~giiS~et~~~~l---p~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (474) T protein:vir:96 413 AQSQYLSKETLVRHH---PWVDDPKAELERLDEEQLELNKQLPNLDDGGADGAQQQQQS 468 (474) T ss_pred HHcCCCChHHHHHhC---CCCCCHHHHHHHHHHHHHHHHhhccccccccCCCCCCcCCC Confidence 778999987766554 44332 11111 11222222111 11111 No 202 >protein:vir:96179 Length: 468 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240075;genbank:gi:66395736;genbank:GeneID:5133166 Probab=96.83 E-value=0.00031 Score=39.79 Aligned_cols=374 Identities=10% Similarity=0.024 Sum_probs=153.5 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccC--CCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecc- Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLG--DNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKK- 77 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~- 77 (392) ++-.+.+....+.... .....++....+-........ .......+..-+.++-....++..+.-+-.-|+++.-. T Consensus 30 ~i~~~i~~~~~~~~~~--~~~~~yY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Iv~~~~~~l~g~p~~~~~~d 107 (468) T protein:vir:96 30 MILRLITKHKENVEDI--TVGERYYNHQPDVLFNAPKRNVKGEIDPFKPDWRMYTNYHQNLVDQKVAYAVANPVTYGTED 107 (468) T ss_pred HHHHHHHHHHHHHHHH--HHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHhhhccCCceeccCC Confidence 2222221111100000 000000000000000000000 00000001111223344455666555555556554321 Q ss_pred -hhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCC-Cce-EEEEEEecCCcc Q lcl|Aclame:pro 78 -KNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEY-ENG-MYYNITFDDPKI 154 (392) Q Consensus 78 -~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~-~~~-~~~~~~~~~~~~ 154 (392) .....+..=.. .........+..+...+|.+|+.+..+.+|.+ .+..++|..+.+..+.. .+. .+....+..... T Consensus 108 ~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~v~~~~~~~~~~~~ir~~~~~~~ 185 (468) T protein:vir:96 108 EKSLKTIQEVLN-HKWDDKLVDILTAASNKGVEWIQPYVDEQGEF-KTFRVPAEQAIPIWTNKERDELKAFIRLYELDGG 185 (468) T ss_pred hHHHHHHHHHHh-cCHHHHHHHHHHHHhhcCeEEEEEEEcCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEecCc Confidence 11111110000 13345556677888999999999888888865 46778888887776532 222 211111111111 Q ss_pred eeeEEEecceEEEecCCC----------------------------------ccccccCCCHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 155 EPILQAPQSDLIHMKLLS----------------------------------IDGGKTGISPLYSLRRESKIQRASDRLT 200 (392) Q Consensus 155 ~~~~~~~~~~vih~~~~~----------------------------------~~~~~~G~s~l~~~~~~i~~~~~~~~~~ 200 (392) .....+....+.|++... ..+...|.|-+..+...++....+.... T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPvv~~~n~~~g~sd~e~v~~liDa~d~~~S~~ 265 (468) T protein:vir:96 186 ERVEYWTANDVTFYELKDGQLIPDYYQGEEHVQAHYYVGNKSMSWNRVPFIPFKNNPQEVSDLFMYKTIIDAMDKRLSDT 265 (468) T ss_pred eEEEEEeCCeEEEEEEcCCceeecccccccccccceeeccccccCCcccEEEecCCCCCCCchHHHHHHHHHHHHHHHHH Confidence 111112222222221100 0011347787887777777777776666 Q ss_pred HHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeecc--CCceEEeccCChhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 201 ISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLD--DLEEFTALEIKSNVAQLLSQTDWTSKQYAKV 278 (392) Q Consensus 201 ~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~--~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~ 278 (392) .+.++..+.|-.+++--.. .......... ..++++.++ ++.+.+-+........+....+...+.|... T Consensus 266 ~~~~~~~~~p~lv~~g~~~-~~~~~~~~~~--------~~~~~i~~~~d~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~ 336 (468) T protein:vir:96 266 QNTFDEATELIYVLKGYEG-EDLEEFMYNL--------KYYKAINVDGDGSGGVDTIQIDVPVQSAKEYLDMLRDYVIEF 336 (468) T ss_pred HHHHHHhcCceeeeecCCc-cccchhhhhh--------hcCceEEecCCCCCcceEEeecCChHHHHHHHHHHHHHHHHH Confidence 6666766677655553211 1111111111 112334332 3333433443333444566777788888888 Q ss_pred hcccHHHcCCcccccchHHHHHHHHHHH---HHHHHHHHHHHHHHHh---hhhhccch-----hhhh-hcChHHHHHHHH Q lcl|Aclame:pro 279 YGLPDSYIGGQGDQQSSIQQISGMYASA---LNRYLRPAISELEYKL---SDHISVNM-----RPAI-DPLGDNYLSTIS 346 (392) Q Consensus 279 fgVP~~~lg~~~~~~~~~~~~~~~~~~~---l~p~l~~i~~~l~~~l---~~~~~~d~-----~~~~-~~~~~~~~~~~~ 346 (392) -++|..-.+.. .++.+..+.+..+... +.-.-..+.+.+.+.+ ....+.+. ...+ +..+....+.++ T Consensus 337 s~~p~~~~~~~-~~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~g~~~d~~~i~i~f~~~~p~d~~e~a~ 415 (468) T protein:vir:96 337 GQGVDFQQDKF-GNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYKLSIKVQDVEITFNFNVMVNELEQSQ 415 (468) T ss_pred hCccccccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEecCCCCcCHHHHHH Confidence 88886433221 1222333333221111 1111111112221111 11111111 0001 122333445566 Q ss_pred HHHhCCccCHHHHHHHHHhCCCCCc---ccccc--------cCCCCCCCCCCCCCC Q lcl|Aclame:pro 347 TATRWGALAENQATFVLQEAGYIPK---DLPAP--------ENTNKKTTGQSNEPV 391 (392) Q Consensus 347 ~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~~--------~~~~~~~~gd~~~p~ 391 (392) .+.++|+++.-.+.+.+ ++..+ |+.++ +..+...|++.++|- T Consensus 416 ~~~~~g~iS~et~i~~l---~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~ 468 (468) T protein:vir:96 416 IGVNSQYLSKETVVTNH---PWVDDPVAEMERIDQEELALPSIEEGLNGKENNEPT 468 (468) T ss_pred HHHhcCCCchHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC Confidence 67788999987776544 43322 22111 122445667777777 No 203 >protein:vir:9306 Length: 511 # NCBI annotation: phi Mu50B-like protein # Family: family:all:125 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803284;genbank:gi:29028594;genbank:GeneID:1258040 Probab=96.76 E-value=0.00035 Score=39.50 Aligned_cols=381 Identities=9% Similarity=0.025 Sum_probs=161.9 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecc--h Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKK--K 78 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~--~ 78 (392) -+..|.+.......+. -.....++. +........... .... -+..-+.++-....++..+.-+-.-|+++.-. . T Consensus 44 ~i~~~i~~~~~~~~~r-~~~l~~Yy~-g~~~il~~~~~~-~~~~-~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d~~ 119 (511) T protein:vir:93 44 EVSKYIEHHMDYQRPR-LKVLSDYYE-GKTKNLVELTRR-KEEY-MADNRVAHDYASYISDFINGYFLGNPIQYQDDDKD 119 (511) T ss_pred HHHHHHHHHHHhhHHH-HHHHHHHhc-ccCccccccCcC-cccc-cCcceeecchHHHHHHHHhhhhcccCeeeccCChH Confidence 1122211111100000 000000100 000000000000 0000 00001122334455666666665566655322 2 Q ss_pred hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCC--ceEEE-E-EEec--C- Q lcl|Aclame:pro 79 NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYE--NGMYY-N-ITFD--D- 151 (392) Q Consensus 79 ~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~--~~~~~-~-~~~~--~- 151 (392) ....+.+=+..-........+..+++.+|.||.++.++.+|.+. +..++|..+.+..+... ..++. . +... . T Consensus 120 ~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~ay~~vy~de~~~~~-i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~~~ 198 (511) T protein:vir:93 120 VLEVIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETR-LYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDK 198 (511) T ss_pred HHHHHHHHHhhcCHhHHHHHHHHHHHhcCeeEEEEEeCCCCceE-EEEEccceeEEEEcCCCCCceEEEEEEEEeeeccc Confidence 22222222222345556677888899999999999999888764 77889998888776542 22221 1 1110 0 Q ss_pred Ccce---eeEEEecceEEEecCCCc-------------------------cccccCCCHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 152 PKIE---PILQAPQSDLIHMKLLSI-------------------------DGGKTGISPLYSLRRESKIQRASDRLTISS 203 (392) Q Consensus 152 ~~~~---~~~~~~~~~vih~~~~~~-------------------------~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~ 203 (392) .... ....+.++.+.+++.... .+...|.|-+..+...++....+..-..+. T Consensus 199 ~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~gd~e~v~~liDa~d~~~S~~~~~ 278 (511) T protein:vir:93 199 TDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANY 278 (511) T ss_pred cccceEEEEEEEeCCcEEEEEecCCCccccccccccccccCCCccceEEecCCCCCCCchhhHHHHHHHHHHHHHHHHHH Confidence 0000 011233333333321100 001257788888888888777776666666 Q ss_pred HHccCCcceEEeeCCCCCchHHHHHHHHHHHhccc---cCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 204 LNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRS---RSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYG 280 (392) Q Consensus 204 ~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fg 280 (392) ++..+.|-.+++-.......+.............. -.+...-.+++.+++-++.......+....+...+.|+..-+ T Consensus 279 ~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~I~~~s~ 358 (511) T protein:vir:93 279 MSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTN 358 (511) T ss_pred HHHhhCcceeeecCcccCchhhcccccccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhC Confidence 77666676665532222211111000000000000 001112234555555555444445556777788888999989 Q ss_pred ccHHHcCCcccccchHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhh-------hhhccchhhhhhcChH Q lcl|Aclame:pro 281 LPDSYIGGQGDQQSSIQQIS--------------GMYASALNRYLRPAISELEYKLS-------DHISVNMRPAIDPLGD 339 (392) Q Consensus 281 VP~~~lg~~~~~~~~~~~~~--------------~~~~~~l~p~l~~i~~~l~~~l~-------~~~~~d~~~~~~~~~~ 339 (392) +|..-.+..+. +.+..+++ ..+...+...++.|...++.+-. ..+++.+..-+..+.. T Consensus 359 ~P~~~~~~~~~-n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~l~~~~~~~~~~d~~~i~~~f~~~~p~n~~ 437 (511) T protein:vir:93 359 TPNMKDDNFSG-TQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWSIDANKDFNTVRYVYNRNLPKSLI 437 (511) T ss_pred Ccccccccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccccceEEeCCCCCCCHH Confidence 98765533221 22222222 22333333333333333222111 0122222222233455 Q ss_pred HHHHHHHHHHhCCccCHHHHHHHHHhCCCCCc---cccccc------------CCCCCC-CCCCCCCCC Q lcl|Aclame:pro 340 NYLSTISTATRWGALAENQATFVLQEAGYIPK---DLPAPE------------NTNKKT-TGQSNEPVP 392 (392) Q Consensus 340 ~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~~~------------~~~~~~-~gd~~~p~p 392 (392) +.+..+.++ .|+++..-+.+++ |+.++ |+..+. .....+ +.++.++.+ T Consensus 438 e~~~~~~kl--~g~iS~et~~~~l---~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (511) T protein:vir:93 438 EELKAYIDS--GGKISQTTLMSLF---SFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDD 501 (511) T ss_pred HHHHHHHHH--hccCchHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCC Confidence 566666665 5788876665543 44332 221110 111111 122233333 No 204 >protein:vir:105292 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950666;genbank:gi:119967836;genbank:GeneID:4643171 Probab=96.68 E-value=0.00041 Score=39.14 Aligned_cols=366 Identities=10% Similarity=0.041 Sum_probs=147.5 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhcc-C-CCCcccc--hhhhhcchHHHHHHHHHHHhhhhCceeeec Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLL-G-DNNEWVS--ARAALRNSDLFSIILQLSSDLAIVKINAEK 76 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~--~~~al~~~~v~~~i~~ia~~ia~lp~~~~~ 76 (392) ++..+.+........ -.....++-. .. .+..... . ....... +..-+.++-...+++..+.-+-.-|+.+.- T Consensus 30 ~i~~~i~~~~~~~~~--~~~~~~yY~g-~~-~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~ 105 (478) T protein:vir:10 30 MILRLVREHKENIDN--ITMGERYYNH-HP-DILDAPPKRDVNGDYDETKPDWRMYTNYHQNLVDQKVAYAVANPVTFGV 105 (478) T ss_pred HHHHHHHHHHHHHHH--HHHHHHHhcC-CC-chhccccccccccccccccccceeccchHHHHHHHHHhhhccCCeeeec Confidence 333332211110000 0000000000 00 0000000 0 0000000 000122233445666666666555665432 Q ss_pred ch--hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCC-Cc-eEEEEEEecCC Q lcl|Aclame:pro 77 KK--NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEY-EN-GMYYNITFDDP 152 (392) Q Consensus 77 ~~--~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~-~~-~~~~~~~~~~~ 152 (392) .+ ....+..=.. .........+..+.+.+|.+|+.+..+.+|++ .+..++|..+.+..+.. .+ ..+....+... T Consensus 106 ~~d~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~~~~d~~g~~-~~~~~~p~~~~~i~d~~~~~~~~~~v~~~~~~ 183 (478) T protein:vir:10 106 DNDKALKQIQHTLN-HKWDDKLVDILTAASNKGIEWVQPYVDEEGEF-KTFRVPAEQAVPIWTNKERDELQAFIRVYELD 183 (478) T ss_pred CChHHHHHHHHHHh-cCHHHHHHHHHHHHHhcCeEEEEEEecCCCee-EEEEEcccceEEEEcCCCCCceEEEEEEEEec Confidence 21 1111111000 13455556677889999999999988888876 46778888888876542 22 22111111100 Q ss_pred cceeeEEEecc---------------------------------------eEEEecCCCccccccCCCHHHHHHHHHHHH Q lcl|Aclame:pro 153 KIEPILQAPQS---------------------------------------DLIHMKLLSIDGGKTGISPLYSLRRESKIQ 193 (392) Q Consensus 153 ~~~~~~~~~~~---------------------------------------~vih~~~~~~~~~~~G~s~l~~~~~~i~~~ 193 (392) .......+..+ .|+++++ ...|.|-+..+...++.. T Consensus 184 ~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~n-----~~~g~sd~~~v~~liDa~ 258 (478) T protein:vir:10 184 GAERVEYWTKDDVTYYELKEGQLIPDFYRSDDHIQPHYYQGNKLMSWGRVPFIPFKN-----NPQEVSDLFMYKTIIDAL 258 (478) T ss_pred CceEEEEEeCCeEEEEEEcCCeeeccccccccccccceecccccccCCccceEEecc-----CCCCCCcHHHHHHHHHHH Confidence 00111111122 2333332 135788888777777777 Q ss_pred HHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeec--cCCceEEeccCChhhHHHHHHHHHH Q lcl|Aclame:pro 194 RASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVL--DDLEEFTALEIKSNVAQLLSQTDWT 271 (392) Q Consensus 194 ~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl--~~g~~~~~l~~~~~d~~~~e~~~~~ 271 (392) ..+.....+.++..+.|-.+++--......+ ..... ..++++.+ ++|.+.+-+........+.+..+.. T Consensus 259 ~~~~S~~~~~~~~~~~p~~~~~g~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 329 (478) T protein:vir:10 259 DKRLSDTQNTFDESVELIYILKGYEGEDMKD-FMHNL--------KYYKAISVAGESGSGVDTIKVEVPIDSVKEYTKML 329 (478) T ss_pred HHHHHHHHHHHHHhhCceeeeecCCccccch-hhhhh--------hhcceEEecCCCCCcceEEeecCChHHHHHHHHHH Confidence 7766666666666666755544321111111 11111 11222322 2333433343333344556777777 Q ss_pred HHHHHHHhcccHHHcCCcccccchHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhh-hhhccchhhhhhc Q lcl|Aclame:pro 272 SKQYAKVYGLPDSYIGGQGDQQSSIQQISGM--------------YASALNRYLRPAISELEYKLS-DHISVNMRPAIDP 336 (392) Q Consensus 272 ~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~--------------~~~~l~p~l~~i~~~l~~~l~-~~~~~d~~~~~~~ 336 (392) .+.|...-++|..-.+..+ ++.+..+.+.. +...+...++.+.+.+..... ..+.+.+..-+.. T Consensus 330 ~~~i~~~s~~p~~~~~~~~-~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~g~~~~~~~i~i~f~~~~p~ 408 (478) T protein:vir:10 330 RDYIIEFGQGVDFQQDKFG-NSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYRLDVKVQDIEITFNFNVMV 408 (478) T ss_pred HHHHHHHhCccccCccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccceEEecCCCCC Confidence 8888888888765443221 12222233222 222222222222211110000 0112222222223 Q ss_pred ChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCc---ccccc--------cCCCCCCCCCCCCCCC Q lcl|Aclame:pro 337 LGDNYLSTISTATRWGALAENQATFVLQEAGYIPK---DLPAP--------ENTNKKTTGQSNEPVP 392 (392) Q Consensus 337 ~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~~--------~~~~~~~~gd~~~p~p 392 (392) +..+.+..+.++ +|+++...+.+++ |+..+ |+..+ +.......+...+.-+ T Consensus 409 d~~e~a~~~~kl--~g~iS~et~~~~l---~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~ 470 (478) T protein:vir:10 409 NELENSQIAMNS--TGLLSKETILSNH---AWVEDPVAEMERIEQENIELNQQLPDIEEGLNGEQQR 470 (478) T ss_pred CHHHHHHHHHHH--hCCCChHHHHHhC---CCCCCHHHHHHHHHHHHHHHHhhccccccccCCCCCC Confidence 455666666665 6788876665544 43322 11111 0111111111111111 No 205 >protein:vir:3964 Length: 453 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663672;genbank:gi:21716109;genbank:GeneID:951201 Probab=96.58 E-value=0.00049 Score=38.72 Aligned_cols=368 Identities=10% Similarity=0.009 Sum_probs=155.4 Q ss_pred Ccchhhh-hhccccccccc-ccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeec-- Q lcl|Aclame:pro 1 MILPILN-FINQTNDPPEA-GSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEK-- 76 (392) Q Consensus 1 m~Mg~~n-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~-- 76 (392) |...++. ++........+ .....++- +.. .+...-...... +..-+..+-....|+..+.-+-.-|+...- T Consensus 17 ~~~~~l~~~i~~~~~~~~r~~~~~~yy~-g~~-~i~~~~~~~~~~---~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~d 91 (453) T protein:vir:39 17 ITNEVVTKFMEKHRLEVARYEYLKNMYR-GIM-AIDAEPTKDLWK---PDNRLTVNFTKYIVDTFTGYFNGIPVKKSHSD 91 (453) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhh-ccC-chhcCCCccccC---ccceeecchHHHHHHHHhhhhcccCceeccCC Confidence 2222221 11111000000 00001110 000 000000000000 001122334455666666666556655432 Q ss_pred chhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCce-E-E-EEEEecCCc Q lcl|Aclame:pro 77 KKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENG-M-Y-YNITFDDPK 153 (392) Q Consensus 77 ~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~-~-~-~~~~~~~~~ 153 (392) +.....+.+-............+..+.+.+|.||+++..+.+|.+. +..++|..+.+..+..... + + ..++..... T Consensus 92 ~~~~~~l~~i~~~N~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~-i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~ 170 (453) T protein:vir:39 92 KETLSKLQEFDNLNDMEDEESELAKMACIYGRAFELLYQNEETQTN-VIYNTPENMFMVYDDTIKQEPLFAVRYGYDDDY 170 (453) T ss_pred hHHHHHHHHHHHhcChhHHHHHHHHHHhhcCeEEEEEEecCCCceE-EEEEcccceEEEecCCCCCeEEEEEEEEEeCCe Confidence 2222222222222244456677888899999999999999888764 6667888888877653321 1 1 111111111 Q ss_pred ceeeEEEecce-------------------------EEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccC Q lcl|Aclame:pro 154 IEPILQAPQSD-------------------------LIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSL 208 (392) Q Consensus 154 ~~~~~~~~~~~-------------------------vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~ 208 (392) ......+.++. |+++++ ...|.|-+..+...++..+.+..-..+.++..+ T Consensus 171 ~~~~~~yt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~~ 245 (453) T protein:vir:39 171 KLYGEVYTKETTYALNGTMGFYNMTEQAPNPFDDLPVVEFYF-----NEERMSIFESVISLVNAFNKAISEKANDVDYFS 245 (453) T ss_pred EEEEEEEeCCeEEEEEecCCceeeecccccCCCceeEEEecC-----CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh Confidence 11111122222 223322 124778888777777776666655666666666 Q ss_pred CcceEEeeCCCCCchHHHHHHHHH-HHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcC Q lcl|Aclame:pro 209 NVPGVLTVKGGGLLSDKDKASRSR-SFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIG 287 (392) Q Consensus 209 ~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg 287 (392) .|-.+++-... +++... .... ......+ ....+++.++.-++.......+.+..+...+.|+..-++|..-.+ T Consensus 246 ~p~~~~~g~~~--~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~lt~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~ 319 (453) T protein:vir:39 246 DQYLTFLGAAV--EEEDLK-NIRSNRVINYYG---ESSEAKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMVANISDE 319 (453) T ss_pred CceeeeecCCC--Cchhhh-hhhhcceeeecC---CCCCCCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccc Confidence 67666653221 111111 1111 0011000 001123333333433333445566777788888888888754332 Q ss_pred CcccccchHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhh----hhhccchhhhhhcChHHHHHHHHHHH Q lcl|Aclame:pro 288 GQGDQQSSIQQIS--------------GMYASALNRYLRPAISELEYKLS----DHISVNMRPAIDPLGDNYLSTISTAT 349 (392) Q Consensus 288 ~~~~~~~~~~~~~--------------~~~~~~l~p~l~~i~~~l~~~l~----~~~~~d~~~~~~~~~~~~~~~~~~~~ 349 (392) .. ++++..+.+ ..+...+...++.+.+.++..-. ..+.+.+..-+..+..+.+..+.++ T Consensus 320 ~~--gn~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~i~v~f~~~~p~~~~~~a~~~~kl- 396 (453) T protein:vir:39 320 SF--GSSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLYCELSTNVSNKEAWKDIEYTFTRNEPKDIKEQAETANIL- 396 (453) T ss_pred cc--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceEEeCCCCCcCHHHHHHHHHHH- Confidence 21 122222222 22333333333333332221100 1122223233333555666666665 Q ss_pred hCCccCHHHHHHHHHhCCCCCc---ccccc------------cCCCCCCCCCCCCCCC Q lcl|Aclame:pro 350 RWGALAENQATFVLQEAGYIPK---DLPAP------------ENTNKKTTGQSNEPVP 392 (392) Q Consensus 350 ~~g~~t~nE~R~~l~~~g~~~~---e~~~~------------~~~~~~~~gd~~~p~p 392 (392) +|+++..-+.+++ |+.++ |+..+ +..+..++.++..+.. T Consensus 397 -~g~is~et~l~~l---~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (453) T protein:vir:39 397 -MGITSQETALSVI---SVIPDVQAEMEKIKKEEASTAIFDKDKQPSEKGTDTVVPET 450 (453) T ss_pred -hccCChHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCc Confidence 6788876655543 44332 11111 1223333332222222 No 206 >protein:vir:102950 Length: 471 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945279;genbank:gi:39653714;interpro:IPR006428;uniprot:Q708N3;genbank:GeneID:2672864 Probab=96.39 E-value=0.00067 Score=37.98 Aligned_cols=370 Identities=11% Similarity=0.006 Sum_probs=151.5 Q ss_pred CcchhhhhhcccccccccccccccccCcch---h------hh-hhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhC Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGND---A------QI-MESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIV 70 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~---~------~~-~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~l 70 (392) ++-.+.+...++.. .-.....++....+ . .. .............+..-+.++-....++..+.-+-+- T Consensus 9 ~i~~~~~~~~~~~~--~~~~~~~Yy~g~hdi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~yl~G~ 86 (471) T protein:vir:10 9 IISSQMVKHGKFVS--QAAEAEKYYRNENDIKRKRKPADKKGAENEAKAEDNAFRNADNRISHNWHQLLLDQKKAYALTY 86 (471) T ss_pred HHHHHHHHHHHHHH--HHHHHHHHhccccccccccchhhhhcccccccccccccccccceeccchhHHHHHhhhhhhccc Confidence 22222111110000 00000000000000 0 00 0000000000000111122333445566666655555 Q ss_pred ceeeecchh--hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEeccc-CCceeEEEEeccccceeeecCCCc--eEEE Q lcl|Aclame:pro 71 KINAEKKKN--QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNA-NGADMKWEYLRPSQVNTYYFEYEN--GMYY 145 (392) Q Consensus 71 p~~~~~~~~--~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~-~G~~~~l~~l~~~~v~~~~~~~~~--~~~~ 145 (392) |+++.-.+. ...+..=.. .........+...+..+|.+|.++.++. +|+ ..+..++|..+-+..+.... ..+. T Consensus 87 p~~~~~~~~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~g~-~~~~~~~p~~~~~i~d~~~~~~~~~~ 164 (471) T protein:vir:10 87 PPTFDVDDKKVNDMIVDVLG-DDYERISKQLCVNAGNAGIAWLHVWKDASDNS-FRYACVDSKEVIPIYSKSLDKKSIGV 164 (471) T ss_pred CceeccCChHHHHHHHHHHh-cCHHHHHHHHHHHHhhCCeEEEEEEeeCCCCe-eEEEEEcccceEEEEcCCCCCceEEE Confidence 665432221 111111000 1233445566788899999999998875 465 45778899988887765432 2211 Q ss_pred --EEEecC---Ccce-eeEEEecceEEEecCCC-------------------------------cc---------ccccC Q lcl|Aclame:pro 146 --NITFDD---PKIE-PILQAPQSDLIHMKLLS-------------------------------ID---------GGKTG 179 (392) Q Consensus 146 --~~~~~~---~~~~-~~~~~~~~~vih~~~~~-------------------------------~~---------~~~~G 179 (392) .+.... .... ....+....+.|+.... .. +...| T Consensus 165 ir~~~~~~~~~~~~~~~~~vy~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n~~~~ 244 (471) T protein:vir:10 165 LRVYSSIDETDGKNYTVYEYWNDKECSFYRHEKEKPLEELETFQAISLIDTMNGDRSSDNSFKHDFGLVPFIPFKNNEIE 244 (471) T ss_pred EEEEEeeccCCCceeEEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccccCCCCceeEEEeccCCCC Confidence 111110 0101 11122333333332110 00 01247 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeec-------cCCceE Q lcl|Aclame:pro 180 ISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVL-------DDLEEF 252 (392) Q Consensus 180 ~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl-------~~g~~~ 252 (392) .|-+......++....+.....+.++..+.|-.+++--......+ ...... .++.+.+ +.+++| T Consensus 245 ~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~-~~~~~~--------~~~~i~~~~~~~~~~~~~~~ 315 (471) T protein:vir:10 245 TNDLKPIKDLVDVYDKVFSGFVNDTDDVQEVIFVLTNYGGQDKQE-FLEDLK--------RYKMIKMDNDGMGDQSGVTT 315 (471) T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCccccch-hHHHhh--------cCCeEEecCCCCccCccceE Confidence 777887777777777776666666666666655555322211111 111111 1112222 123444 Q ss_pred EeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHH--------------HHHHHHHHHHHHHHHH Q lcl|Aclame:pro 253 TALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGM--------------YASALNRYLRPAISEL 318 (392) Q Consensus 253 ~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~--------------~~~~l~p~l~~i~~~l 318 (392) ..-.. ....+....+...+.|...-++|..-.... ++.+..+.+.. +...+.-.++.+.+.+ T Consensus 316 l~~~~--~~~~~~~~~~~l~~~I~~~s~tp~~~~~~~--gn~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~ 391 (471) T protein:vir:10 316 IAIDI--PTEARNLILERTKKQIFISGQGVNPETDKL--GNSSGVALKFLYSLLELKAGNMETQFRSGYATLVKMILKHL 391 (471) T ss_pred EeecC--ChHHHHHHHHHHHHHHHHHhCCcCCCcccc--cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 44333 333456667777788888888876533221 12222223222 2222222222222221 Q ss_pred HHHhhhhhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCc---cccc--------ccCCCCCCCCCC Q lcl|Aclame:pro 319 EYKLSDHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPK---DLPA--------PENTNKKTTGQS 387 (392) Q Consensus 319 ~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~--------~~~~~~~~~gd~ 387 (392) ...=...+.+.+...+..+..+.+..+.++ .|+++.--+.+++ |+..+ |+.. .+..+.+.++.. T Consensus 392 ~~~d~~~i~i~f~~~~p~n~~e~~~~~~kl--~g~iS~et~~~~~---p~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~ 466 (471) T protein:vir:10 392 GLSDKLKIKQTWTRNSINNDTEMAQVVSTL--ATITSRENVAKSN---PIVEDWQDELRLQKAEQEGRSEKLYDMEEVEH 466 (471) T ss_pred ccCCCceeEEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhC---CCCCCHHHHHHHHHHHHHHHHhcccccCCCCC Confidence 110001223333333344556666766665 5788877666543 44322 1111 122334443333 Q ss_pred CCCCC Q lcl|Aclame:pro 388 NEPVP 392 (392) Q Consensus 388 ~~p~p 392 (392) +.-+= T Consensus 467 ~~e~~ 471 (471) T protein:vir:10 467 ESEVE 471 (471) T ss_pred ccccC Confidence 32222 No 207 >protein:vir:94546 Length: 506 # NCBI annotation: minor head protein # Family: family:all:125 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223886;genbank:gi:62327098;genbank:GeneID:5075562 Probab=96.39 E-value=0.00067 Score=37.98 Aligned_cols=380 Identities=10% Similarity=-0.008 Sum_probs=151.6 Q ss_pred Ccchhhhhhccccccccc------cccccc----cc-Cc-chhhhhhhccCCCCc----------ccchhhhhcchHHHH Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEA------GSVQSY----FP-DG-NDAQIMESLLGDNNE----------WVSARAALRNSDLFS 58 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~------~~~~~~----~~-~~-~~~~~~~~~~~~~~~----------~~~~~~al~~~~v~~ 58 (392) |+--|.+.......-+.. ..+... .. .. ........+.+.... ...+..-+..+-... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~~i~~li~~~~~~~~~r~~~l~~YY~g~~~~i~~~~~~~~~~~~~~~ki~~n~~~~ 80 (506) T protein:vir:94 1 MDYDLTEHKQANLIYQESLENLTPNKIMKFITHHFNYQRPRLEMLDDYYQGYNLKILDKQSRRHEDGKADHRATHSFAKY 80 (506) T ss_pred CCcchhhhhcceeecccchhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccCCcceeecchHHH Confidence 544444322111000000 000000 00 00 000000011111000 000111223344555 Q ss_pred HHHHHHHhhhhCceeee--cchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeee Q lcl|Aclame:pro 59 IILQLSSDLAIVKINAE--KKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYY 136 (392) Q Consensus 59 ~i~~ia~~ia~lp~~~~--~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~ 136 (392) .|+..+.-+-.-|++.. +......+.+=+...........+..+++.+|.+|+++..+.+|++. +..++|..+.+.. T Consensus 81 Iv~~~~~~l~G~p~~~~~~d~~~~~~l~~~~~~N~~~~~~~~~~~~~~~~G~a~~~v~~ded~~~~-i~~~~p~~~~~v~ 159 (506) T protein:vir:94 81 IADFQTSYSVGNPINVKLPDDGSNSGFDTFNKANDVDAENYDLFLDMSRYGRAYEYVYRGEDNEEH-LAKLDPLDTFVIY 159 (506) T ss_pred HHHHhhhhhcccCceeecCcchHHHHHHHHHhccCHhHHHHHHHHHHHhcCeEEEEEEecCCCeeE-EEEEcccceEEEe Confidence 66666666555565532 22222222222222244445666778888999999999998888664 6678888888877 Q ss_pred cCCC--ceEEEE--EEe--c-CCcce----eeEEEecc-------------------------eEEEecCCCccccccCC Q lcl|Aclame:pro 137 FEYE--NGMYYN--ITF--D-DPKIE----PILQAPQS-------------------------DLIHMKLLSIDGGKTGI 180 (392) Q Consensus 137 ~~~~--~~~~~~--~~~--~-~~~~~----~~~~~~~~-------------------------~vih~~~~~~~~~~~G~ 180 (392) +... ..++.. +.. . ..... ....+... .|++++++ ..|. T Consensus 160 dd~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~yt~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~-----~~~~ 234 (506) T protein:vir:94 160 STDVDPKPIMAVRYHQIELVDDNQVSTINYVPETWTADTYTLYNPTPIMGKMQVDTTKPITTFPVVEFKNS-----NFRL 234 (506) T ss_pred cCCCCCceEEEEEEEeeeeccCCceeEEEEEEEEEeCceEEEeccccCccceeccccccCCccceEEecCC-----CCCC Confidence 6432 111111 000 0 00000 00011111 22333221 1356 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCC--------------------CCchH---HHHHHHH-HHHhc Q lcl|Aclame:pro 181 SPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGG--------------------GLLSD---KDKASRS-RSFMK 236 (392) Q Consensus 181 s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~--------------------~~~~~---~~~~~~~-~~~~~ 236 (392) |.+......++....+.....+..+..+.|-.+++-... ....+ ...+... ..... T Consensus 235 sd~e~~~~liDa~d~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (506) T protein:vir:94 235 GDFENVLPLIDLYDAAQSDTANYMTDLNEAMLIIQGDIDTLFEGSDMMNTIDPNDEDAMAKLAKDKLELIKEMKDANMLL 314 (506) T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCccccccchhccccccccccccccccccchhHHHhhhhhcCeee Confidence 666666666655555443333333322223222221000 00000 0010110 01111 Q ss_pred cccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHH--------------HHH Q lcl|Aclame:pro 237 RSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQI--------------SGM 302 (392) Q Consensus 237 ~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~--------------~~~ 302 (392) ....+.+...+.+.+++-+........+....+...+.|...-++|..-.+...+ +.+..+. +.. T Consensus 315 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~-n~Sg~Aik~~~~~l~~k~~~k~~~ 393 (506) T protein:vir:94 315 LKSGMTVNGTQTSVDAKYINKTYDVVGSEAYKKRVAGDIHKFSHTPDLTDENFAS-NSSGVAMQYKVLGTVELASTKRRM 393 (506) T ss_pred ecccccccCccccccceeeeecCCHHHHHHHHHHHHHHHHHHhCccccccccccc-cchHHHHHHHHHHHHHHHHHHHHH Confidence 1112222222344455555555555566777888889999999998743321111 1122222 233 Q ss_pred HHHHHHHHHHHHHHHHHHHhh------hhhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCc---cc Q lcl|Aclame:pro 303 YASALNRYLRPAISELEYKLS------DHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPK---DL 373 (392) Q Consensus 303 ~~~~l~p~l~~i~~~l~~~l~------~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~ 373 (392) +...+...++.|.+.+...=. ..+.+.+..-+..+..+.+..+.++ .|+++...+.+++ |+..+ |+ T Consensus 394 ~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~d~~e~a~~~~kl--~g~iS~et~~~~l---p~v~d~~~E~ 468 (506) T protein:vir:94 394 FERGLYARYQIISDIENSIHGDWTFDPQELTFTFRDNLPADNISQIKALVQA--GATLPQKYLYQQL---PGVTNPQDIV 468 (506) T ss_pred HHHHHHHHHHHHHHHHHhcCCccccccccceEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhC---CCCCCHHHHH Confidence 444444444444444332100 1122222333334455666666665 5899998777654 44332 11 Q ss_pred ccc-------cCCCCCCCCCCCCCCC Q lcl|Aclame:pro 374 PAP-------ENTNKKTTGQSNEPVP 392 (392) Q Consensus 374 ~~~-------~~~~~~~~gd~~~p~p 392 (392) -.+ +......+++..+-.+ T Consensus 469 ~ri~~E~~~~~~~~~~~~~~~~~~~~ 494 (506) T protein:vir:94 469 DMMKEQSANGDYSFDQNGVISNDGQT 494 (506) T ss_pred HHHHHHHHHHhhcchhhcCCCcccCc Confidence 111 0010011111111111 No 208 >protein:vir:97171 Length: 512 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239722;genbank:gi:66394876;genbank:GeneID:5130904 Probab=96.35 E-value=0.00071 Score=37.84 Aligned_cols=381 Identities=8% Similarity=-0.021 Sum_probs=161.6 Q ss_pred Ccc----hhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeec Q lcl|Aclame:pro 1 MIL----PILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEK 76 (392) Q Consensus 1 m~M----g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~ 76 (392) +-+ .|.+.......+. -.....++.. ... ++......... .-+..-+...-..-.++..+.-+-.-|+.+.- T Consensus 40 ~~~~~i~~~i~~~~~~~~~r-~~~l~~YY~g-~~~-i~~~~~~~~~~-~~~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~~ 115 (512) T protein:vir:97 40 QNINEVSKYIEHHMDYQRPR-LKVLSDYYEG-KTK-NLVELTRRKEE-YMADNRVAHDYASYISDFINGYFLGNPIQCQD 115 (512) T ss_pred hhHHHHHHHHHHHHHhhHHH-HHHHHHHhcc-cCc-cccccCccccc-ccCcceeecchHHHHHHHHhhhhcccCceecc Confidence 222 2222111110000 0001111110 000 00000000000 00001111233445666666666666766532 Q ss_pred ch--hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCC--ceEEE-EE-Ee- Q lcl|Aclame:pro 77 KK--NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYE--NGMYY-NI-TF- 149 (392) Q Consensus 77 ~~--~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~--~~~~~-~~-~~- 149 (392) .+ ....+..=+..-........+..+++.+|.+|+++.++.+|.+. +..++|..+.+..+... ..++. .+ .. T Consensus 116 ~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~ay~~vy~ded~~~~-i~~~~p~~~~~iyd~~~~~~~~~~vr~~~~~ 194 (512) T protein:vir:97 116 DDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETR-LYKSDAMSTFVIYDNTIERNSIAGVRYLRTK 194 (512) T ss_pred CChHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeEEEEEEeCCCCceE-EEEEcccceEEEEcCCCCCceEEEEEEEEee Confidence 22 22222222222344555667888899999999999999888754 77889998888876543 11211 11 11 Q ss_pred -cCC-cc---eeeEEEecceEEEecCCCc-------------------------cccccCCCHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 150 -DDP-KI---EPILQAPQSDLIHMKLLSI-------------------------DGGKTGISPLYSLRRESKIQRASDRL 199 (392) Q Consensus 150 -~~~-~~---~~~~~~~~~~vih~~~~~~-------------------------~~~~~G~s~l~~~~~~i~~~~~~~~~ 199 (392) ..+ .. .....+..+.+.++..... .+...|.|-+..+...++....+..- T Consensus 195 ~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~gd~e~v~~liDa~d~~~S~ 274 (512) T protein:vir:97 195 PIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESD 274 (512) T ss_pred eccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCcccceEeecCCCCCCCchhhhHHHHHHHHHHHHH Confidence 000 00 0111233334444321100 00124788888888888887777666 Q ss_pred HHHHHHccCCcceEEeeCCCCCchHHHH--HHHHHHHhcc--ccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 200 TISSLNSSLNVPGVLTVKGGGLLSDKDK--ASRSRSFMKR--SRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQY 275 (392) Q Consensus 200 ~~~~~~ng~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~--~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~I 275 (392) ..+.++..+.|-.+++-.......+-.. .......... .+.+...-.++|.+++-+........+....+...+.| T Consensus 275 ~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I 354 (512) T protein:vir:97 275 TANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYENRDTGIETEGSVDGGYIYKQYDVQGTEAYKDRLNSDI 354 (512) T ss_pred HHHHHHHhcCceeeeecCccCCchhhhhhhhcccccccccchhhcccccCCCCCcceEEEeecCCHHHHHHHHHHHHHHH Confidence 6666666666766665432222221111 0000000011 11111112345556655554444444566777778888 Q ss_pred HHHhcccHHHcCCcccccchHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhhh-------hhccchhhhh Q lcl|Aclame:pro 276 AKVYGLPDSYIGGQGDQQSSIQQISG--------------MYASALNRYLRPAISELEYKLSD-------HISVNMRPAI 334 (392) Q Consensus 276 a~~fgVP~~~lg~~~~~~~~~~~~~~--------------~~~~~l~p~l~~i~~~l~~~l~~-------~~~~d~~~~~ 334 (392) +..-++|..-.+..+ ++.+..+++. .+...+.-.++.|...+...-.. .+.+.+..-+ T Consensus 355 ~~~s~~p~~~~~~~~-gn~Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~~~f~~~~ 433 (512) T protein:vir:97 355 HMFTNTPNMKDDNFS-GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRNL 433 (512) T ss_pred HHHhCCcccCccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccceEEeCCCC Confidence 888888876554322 1222222221 22223333333332222211100 1122222222 Q ss_pred hcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCc---cccccc------------CCCCCC-CCCCCCCCC Q lcl|Aclame:pro 335 DPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPK---DLPAPE------------NTNKKT-TGQSNEPVP 392 (392) Q Consensus 335 ~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~~~------------~~~~~~-~gd~~~p~p 392 (392) ..+..+.+..+.++ .|+++..-+.+++ |+..+ |+..++ .....+ +++..++.+ T Consensus 434 p~~~~e~~~~~~kl--~giiS~et~~~~l---~~v~d~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (512) T protein:vir:97 434 PKSLIEELKAYIDS--GGKISQTTLMSLF---SFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDD 502 (512) T ss_pred CcCHHHHHHHHHHH--hccCchHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCC Confidence 23445555666655 4788886555544 44332 211110 111112 223333333 No 209 >protein:vir:96240 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239567;genbank:gi:66395299;genbank:GeneID:5132789 Probab=96.29 E-value=0.00078 Score=37.62 Aligned_cols=381 Identities=9% Similarity=0.009 Sum_probs=162.5 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecc--h Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKK--K 78 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~--~ 78 (392) -+..|.+.......+. -.....++. +........- ..... ..+..-+...-....++..+.-+-.-|+.+.-. . T Consensus 44 ~i~~~i~~~~~~~~~r-~~~l~~Yy~-g~~~i~~~~~-~~~~~-~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~~~~ 119 (511) T protein:vir:96 44 EVSKYIEHHMDYQRPR-LKVLSDYYE-GKTKNLVELT-RRKEE-YMADNRVAHDYASYISDFINGYFLGNPIQYQDDDKD 119 (511) T ss_pred HHHHHHHHHHHhhHHH-HHHHHHHhc-ccCccccccC-cCccc-ccCcceeecchHHHHHHHHHhhhccCCceeecCchH Confidence 1112211110000000 000000100 0000000000 00000 000011122334455666666666666665322 2 Q ss_pred hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCC--ceEEE-E-EEec--CC Q lcl|Aclame:pro 79 NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYE--NGMYY-N-ITFD--DP 152 (392) Q Consensus 79 ~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~--~~~~~-~-~~~~--~~ 152 (392) ....+.+-+..-........+..++..+|.+|.++.++.+|.+ .+..++|..+.+..+... ..++. + +... .+ T Consensus 120 ~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~a~~~vy~ded~~~-~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~d~ 198 (511) T protein:vir:96 120 VLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDK 198 (511) T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEEeeeccc Confidence 2222333333334555667788889999999999999888865 477788988888776532 12221 1 1110 00 Q ss_pred -cce---eeEEEecceEEEecCCC-------------------------ccccccCCCHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 153 -KIE---PILQAPQSDLIHMKLLS-------------------------IDGGKTGISPLYSLRRESKIQRASDRLTISS 203 (392) Q Consensus 153 -~~~---~~~~~~~~~vih~~~~~-------------------------~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~ 203 (392) ... ....+.++.+.++.... ..+...|.|-+..+...++....+..-..+. T Consensus 199 ~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~g~gd~e~v~~liDa~d~~~S~~~~~ 278 (511) T protein:vir:96 199 TDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANY 278 (511) T ss_pred cccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCCceeeEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHH Confidence 000 01122333333321100 0001257888888888888777776666666 Q ss_pred HHccCCcceEEeeCCCCCchHHHH--HHHHHHHhccc-cCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 204 LNSSLNVPGVLTVKGGGLLSDKDK--ASRSRSFMKRS-RSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYG 280 (392) Q Consensus 204 ~~ng~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~-~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fg 280 (392) ++..+.|-.+++-.......+-.. +.......... ..+...-.+++.+++-++.......+....+...+.|+..-+ T Consensus 279 ~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~ 358 (511) T protein:vir:96 279 MSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTN 358 (511) T ss_pred HHHhhCceeeeecCccCCchhhcccccccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhC Confidence 776666766665432222211110 00000000000 011111223455565555544455567777888899999999 Q ss_pred ccHHHcCCcccccchHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhhh-------hhccchhhhhhcChH Q lcl|Aclame:pro 281 LPDSYIGGQGDQQSSIQQIS--------------GMYASALNRYLRPAISELEYKLSD-------HISVNMRPAIDPLGD 339 (392) Q Consensus 281 VP~~~lg~~~~~~~~~~~~~--------------~~~~~~l~p~l~~i~~~l~~~l~~-------~~~~d~~~~~~~~~~ 339 (392) +|..-.+..+ ++.+..+++ ..+...+.-.++.|...+..+-.. .+.+.+..-+..+.. T Consensus 359 ~p~~~~~~~~-~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~~~f~~~~p~n~~ 437 (511) T protein:vir:96 359 TPNMKDDNFS-GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWSIDANKDFNTVRYVYNRNLPKSLI 437 (511) T ss_pred Cccccccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccccceEEeCCCCCCCHH Confidence 9886554322 122222222 223333333333333333221110 122222222233455 Q ss_pred HHHHHHHHHHhCCccCHHHHHHHHHhCCCCCc---cccccc------------CCCCC-CCCCCCCCCC Q lcl|Aclame:pro 340 NYLSTISTATRWGALAENQATFVLQEAGYIPK---DLPAPE------------NTNKK-TTGQSNEPVP 392 (392) Q Consensus 340 ~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~~~------------~~~~~-~~gd~~~p~p 392 (392) +.+..+.++ .|+++.-.+.+++ |+..+ |+..+. ..... .+.+..++.+ T Consensus 438 e~~~~~~kl--~G~iS~et~l~~l---~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (511) T protein:vir:96 438 EELKAYIDS--GGKISQTTLMSLF---SFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDD 501 (511) T ss_pred HHHHHHHHH--hccCChHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCC Confidence 566666665 6788876665543 43322 221110 01111 1122222222 No 210 >protein:vir:96366 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239644;genbank:gi:66395376;genbank:GeneID:5132842 Probab=95.89 E-value=0.0013 Score=36.41 Aligned_cols=381 Identities=9% Similarity=0.018 Sum_probs=157.5 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeec--ch Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEK--KK 78 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~--~~ 78 (392) -+..+.+.......+. -.....++. +....+... ....... -+..-+.+....-.++..+.-+-.-|+.+.- .. T Consensus 44 ~i~~~i~~~~~~~~~r-~~~l~~Yy~-g~~~il~~~-~~~~~~~-~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d~~ 119 (511) T protein:vir:96 44 EVSKYIEHHMDYQRPR-LKVLSDYYE-GKTKNLVEL-TRRKEEY-MADNRVAHDYASYISDFINGYFLGNPIQYQDDDKD 119 (511) T ss_pred HHHHHHHHHHHhhhHH-HHHHHHHhh-ccCcccccc-Ccccccc-cCcceeecchHHHHHHHHhhhhcccCceeecCchH Confidence 1111111110000000 000000100 000000000 0000000 0001112233444566666666556665432 22 Q ss_pred hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCC--ceEEE--EEEec--C- Q lcl|Aclame:pro 79 NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYE--NGMYY--NITFD--D- 151 (392) Q Consensus 79 ~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~--~~~~~--~~~~~--~- 151 (392) ....+..-+..-....+...+..+++.+|.+|.++.++.+|++ .+..++|..+.+..+... ..++. ++... . T Consensus 120 ~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~vy~d~dg~~-~i~~~~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~~ 198 (511) T protein:vir:96 120 VLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFIIYDNTVERNSIAGVRYLRTKPIDK 198 (511) T ss_pred HHHHHHHHHhhcChhHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEeeeccc Confidence 2222332222233445666788889999999999999988875 467788888888776543 22221 11110 0 Q ss_pred Ccce---eeEEEecceEEEecCCCc-------------------------cccccCCCHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 152 PKIE---PILQAPQSDLIHMKLLSI-------------------------DGGKTGISPLYSLRRESKIQRASDRLTISS 203 (392) Q Consensus 152 ~~~~---~~~~~~~~~vih~~~~~~-------------------------~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~ 203 (392) .... ....+.++.+.++...+. .+...|.|-+..+...++....+..-..+. T Consensus 199 ~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~gd~e~v~~liDa~~~~~S~~~~~ 278 (511) T protein:vir:96 199 TDEDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANY 278 (511) T ss_pred cccceEEEEEEEeCCcEEEEEecCCCcccccccccccccCcCcccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHH Confidence 0000 111234444444321100 011247788888888888777666555556 Q ss_pred HHccCCcceEEeeCCCCCchHHHHHHHHHHHhcccc---CCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 204 LNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSR---SGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYG 280 (392) Q Consensus 204 ~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fg 280 (392) ++..+.|-.+++-......++-.............. .+.-.-.+++.+.+-++.......+....+...+.|+..-+ T Consensus 279 ~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~ 358 (511) T protein:vir:96 279 MSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTN 358 (511) T ss_pred HHHhhcchhheecCccCCchhhcccccccceeccccceeccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhC Confidence 666666666555422222111110000000000000 00001112334444444333444556777788889999999 Q ss_pred ccHHHcCCcccccchHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhh-------hhhccchhhhhhcChH Q lcl|Aclame:pro 281 LPDSYIGGQGDQQSSIQQISG--------------MYASALNRYLRPAISELEYKLS-------DHISVNMRPAIDPLGD 339 (392) Q Consensus 281 VP~~~lg~~~~~~~~~~~~~~--------------~~~~~l~p~l~~i~~~l~~~l~-------~~~~~d~~~~~~~~~~ 339 (392) +|..-.+..+. +.+..+++. .+...+.-.++.|...+...-. ..+++.+..-+..+.. T Consensus 359 ~P~~~~~~~~~-n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~~~f~~~~p~n~~ 437 (511) T protein:vir:96 359 TPNMKDDNFSG-TQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLI 437 (511) T ss_pred Ccccccccccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccceEEeCCCCCcCHH Confidence 98765543221 222222222 2233333333333333222110 0122222222233445 Q ss_pred HHHHHHHHHHhCCccCHHHHHHHHHhCCCCCc---cccccc------------CCCCCC-CCCCCCCCC Q lcl|Aclame:pro 340 NYLSTISTATRWGALAENQATFVLQEAGYIPK---DLPAPE------------NTNKKT-TGQSNEPVP 392 (392) Q Consensus 340 ~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~~~------------~~~~~~-~gd~~~p~p 392 (392) +.+..+.++ .|+++..-+.+++ |+..+ |+..++ .....+ +.+..++.+ T Consensus 438 e~~d~~~kl--~G~iS~et~l~~l---~~v~d~~~El~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (511) T protein:vir:96 438 EELKAYIDS--GGKISQTTLMSLF---SFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDD 501 (511) T ss_pred HHHHHHHHH--hccCChHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCC Confidence 566666666 4788876555443 44332 221111 111111 222333334 No 211 >protein:vir:78805 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285356;genbank:gi:148717884;genbank:GeneID:5246936 Probab=95.89 E-value=0.0013 Score=36.41 Aligned_cols=381 Identities=9% Similarity=0.018 Sum_probs=157.5 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeec--ch Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEK--KK 78 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~--~~ 78 (392) -+..+.+.......+. -.....++. +....+... ....... -+..-+.+....-.++..+.-+-.-|+.+.- .. T Consensus 44 ~i~~~i~~~~~~~~~r-~~~l~~Yy~-g~~~il~~~-~~~~~~~-~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d~~ 119 (511) T protein:vir:78 44 EVSKYIEHHMDYQRPR-LKVLSDYYE-GKTKNLVEL-TRRKEEY-MADNRVAHDYASYISDFINGYFLGNPIQYQDDDKD 119 (511) T ss_pred HHHHHHHHHHHhhhHH-HHHHHHHhh-ccCcccccc-Ccccccc-cCcceeecchHHHHHHHHhhhhcccCceeecCchH Confidence 1111111110000000 000000100 000000000 0000000 0001112233444566666666556665432 22 Q ss_pred hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCC--ceEEE--EEEec--C- Q lcl|Aclame:pro 79 NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYE--NGMYY--NITFD--D- 151 (392) Q Consensus 79 ~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~--~~~~~--~~~~~--~- 151 (392) ....+..-+..-....+...+..+++.+|.+|.++.++.+|++ .+..++|..+.+..+... ..++. ++... . T Consensus 120 ~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~vy~d~dg~~-~i~~~~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~~ 198 (511) T protein:vir:78 120 VLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFIIYDNTVERNSIAGVRYLRTKPIDK 198 (511) T ss_pred HHHHHHHHHhhcChhHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEeeeccc Confidence 2222332222233445666788889999999999999988875 467788888888776543 22221 11110 0 Q ss_pred Ccce---eeEEEecceEEEecCCCc-------------------------cccccCCCHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 152 PKIE---PILQAPQSDLIHMKLLSI-------------------------DGGKTGISPLYSLRRESKIQRASDRLTISS 203 (392) Q Consensus 152 ~~~~---~~~~~~~~~vih~~~~~~-------------------------~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~ 203 (392) .... ....+.++.+.++...+. .+...|.|-+..+...++....+..-..+. T Consensus 199 ~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~gd~e~v~~liDa~~~~~S~~~~~ 278 (511) T protein:vir:78 199 TDEDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANY 278 (511) T ss_pred cccceEEEEEEEeCCcEEEEEecCCCcccccccccccccCcCcccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHH Confidence 0000 111234444444321100 011247788888888888777666555556 Q ss_pred HHccCCcceEEeeCCCCCchHHHHHHHHHHHhcccc---CCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 204 LNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSR---SGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYG 280 (392) Q Consensus 204 ~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fg 280 (392) ++..+.|-.+++-......++-.............. .+.-.-.+++.+.+-++.......+....+...+.|+..-+ T Consensus 279 ~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~ 358 (511) T protein:vir:78 279 MSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTN 358 (511) T ss_pred HHHhhcchhheecCccCCchhhcccccccceeccccceeccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhC Confidence 666666666555422222111110000000000000 00001112334444444333444556777788889999999 Q ss_pred ccHHHcCCcccccchHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhh-------hhhccchhhhhhcChH Q lcl|Aclame:pro 281 LPDSYIGGQGDQQSSIQQISG--------------MYASALNRYLRPAISELEYKLS-------DHISVNMRPAIDPLGD 339 (392) Q Consensus 281 VP~~~lg~~~~~~~~~~~~~~--------------~~~~~l~p~l~~i~~~l~~~l~-------~~~~~d~~~~~~~~~~ 339 (392) +|..-.+..+. +.+..+++. .+...+.-.++.|...+...-. ..+++.+..-+..+.. T Consensus 359 ~P~~~~~~~~~-n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~~~f~~~~p~n~~ 437 (511) T protein:vir:78 359 TPNMKDDNFSG-TQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLI 437 (511) T ss_pred Ccccccccccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccceEEeCCCCCcCHH Confidence 98765543221 222222222 2233333333333333222110 0122222222233445 Q ss_pred HHHHHHHHHHhCCccCHHHHHHHHHhCCCCCc---cccccc------------CCCCCC-CCCCCCCCC Q lcl|Aclame:pro 340 NYLSTISTATRWGALAENQATFVLQEAGYIPK---DLPAPE------------NTNKKT-TGQSNEPVP 392 (392) Q Consensus 340 ~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~~~------------~~~~~~-~gd~~~p~p 392 (392) +.+..+.++ .|+++..-+.+++ |+..+ |+..++ .....+ +.+..++.+ T Consensus 438 e~~d~~~kl--~G~iS~et~l~~l---~~v~d~~~El~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (511) T protein:vir:78 438 EELKAYIDS--GGKISQTTLMSLF---SFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDD 501 (511) T ss_pred HHHHHHHHH--hccCChHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCC Confidence 566666666 4788876555443 44332 221111 111111 222333334 No 212 >protein:vir:103951 Length: 511 # NCBI annotation: phage portal protein # Family: family:all:125 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873988;genbank:gi:118430763;genbank:GeneID:4525445 Probab=95.87 E-value=0.0013 Score=36.34 Aligned_cols=381 Identities=9% Similarity=-0.000 Sum_probs=159.8 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecch-- Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKK-- 78 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~-- 78 (392) -+..+.+.......+. -.....++. +........ ...... .-+..-+...-....++..+.-+-.-|+.+.-.+ T Consensus 44 ~i~~~i~~~~~~~~~r-~~~l~~Yy~-g~~~i~~~~-~~~~~~-~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d~~ 119 (511) T protein:vir:10 44 EVSKCIEHHMDYQRPR-LKVLSDYYE-GKTKNLVEL-TRRKEE-YMADNRVAHDYASYISDFINGYFLGNPIQYQDDDKD 119 (511) T ss_pred HHHHHHHHHHHhhHHH-HHHHHHHhc-ccCcccccc-Cccccc-ccCcceeecchHHHHHHHHhhhhcccCceeecCchH Confidence 1222222111110000 000001110 000000000 000000 0001111223344556666666656666653222 Q ss_pred hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCC--ceEEE-EE-Ee--cCC Q lcl|Aclame:pro 79 NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYE--NGMYY-NI-TF--DDP 152 (392) Q Consensus 79 ~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~--~~~~~-~~-~~--~~~ 152 (392) ....+..=+..-........+..++..+|.||.++.++.+|.+ .+..++|..+.+..+... ..++. .+ .. ... T Consensus 120 ~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~ay~~vy~dedg~~-~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~d~ 198 (511) T protein:vir:10 120 VLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYEIMIRNQDDET-RLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDK 198 (511) T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEEeeeccc Confidence 1122222222223444556677889999999999999888875 467788888888776543 11211 11 10 000 Q ss_pred -cce---eeEEEecceEEEecCCCc-------------------------cccccCCCHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 153 -KIE---PILQAPQSDLIHMKLLSI-------------------------DGGKTGISPLYSLRRESKIQRASDRLTISS 203 (392) Q Consensus 153 -~~~---~~~~~~~~~vih~~~~~~-------------------------~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~ 203 (392) ... ....+.++.+.++..... .+...|.|-+..+...++....+..-..+. T Consensus 199 ~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~f~nn~~g~gd~e~v~~liDa~d~~~S~~~~~ 278 (511) T protein:vir:10 199 TDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANY 278 (511) T ss_pred CccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCcceeEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHH Confidence 000 011223333333211000 001247888888888888777776666666 Q ss_pred HHccCCcceEEeeCCCCCchHHH--HHHHHHHHhccc-cCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 204 LNSSLNVPGVLTVKGGGLLSDKD--KASRSRSFMKRS-RSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYG 280 (392) Q Consensus 204 ~~ng~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~-~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fg 280 (392) ++..+.|-.+++-.......+-. .+.......... -.+...-.++|.+++-++....+..+....+...+.|+..-+ T Consensus 279 ~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~ 358 (511) T protein:vir:10 279 MSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTN 358 (511) T ss_pred HHHhhCceeeeeccccCCchhhccchhccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhC Confidence 67766676665542222211111 100000000000 011112234455666665544555566777888888999888 Q ss_pred ccHHHcCCcccccchHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhhh-------hhccchhhhhhcChH Q lcl|Aclame:pro 281 LPDSYIGGQGDQQSSIQQIS--------------GMYASALNRYLRPAISELEYKLSD-------HISVNMRPAIDPLGD 339 (392) Q Consensus 281 VP~~~lg~~~~~~~~~~~~~--------------~~~~~~l~p~l~~i~~~l~~~l~~-------~~~~d~~~~~~~~~~ 339 (392) +|..-.+..+ ++.+..+.+ ..+...+.-.++.|.+.+...-.. .+++.+..-+..+.. T Consensus 359 ~P~~~~~~~~-~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~i~f~~~~p~d~~ 437 (511) T protein:vir:10 359 TPNMKDDNFS-GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLI 437 (511) T ss_pred Cccccccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccceeeEEeCCCCCcCHH Confidence 8876543322 122222222 223333333333333333222110 122222233334555 Q ss_pred HHHHHHHHHHhCCccCHHHHHHHHHhCCCCCc---cccccc------------CCCCCCC-CCCCC------CCC Q lcl|Aclame:pro 340 NYLSTISTATRWGALAENQATFVLQEAGYIPK---DLPAPE------------NTNKKTT-GQSNE------PVP 392 (392) Q Consensus 340 ~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~~~------------~~~~~~~-gd~~~------p~p 392 (392) +.+..+.++ .|+++..-+.+++ |+..+ |+..++ +....++ .+..+ +.+ T Consensus 438 ~~~~~~~kl--~G~iS~et~~~~l---~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (511) T protein:vir:10 438 EELKAYIDS--GGKISQTTLMSLF---SFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDDTKDTV 507 (511) T ss_pred HHHHHHHHH--hccCcHHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcccCcc Confidence 666666666 4778876555543 43322 221110 0111111 11111 122 No 213 >protein:vir:106571 Length: 499 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958580;genbank:gi:41179240;genbank:GeneID:2717107 Probab=95.84 E-value=0.0014 Score=36.28 Aligned_cols=371 Identities=10% Similarity=0.030 Sum_probs=149.5 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecch-- Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKK-- 78 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~-- 78 (392) ++..+.+.+..+...- .....++.. .. .+...-..... -+..-+...-....|+..+.-+-.-|+...-.+ T Consensus 20 ~i~~~i~~~~~~~~~~--~~l~~Yy~g-~~-~i~~~~~~~~~---~~~~ki~~n~~~~Iv~~~~~~l~g~p~~~~~~~~~ 92 (499) T protein:vir:10 20 AINYAIRELQNRKKRL--DKLSDYYNG-KQ-EIEKHEFDNAT---VEAANVMVNHAKYITDMNVGFMTGNPVKYVAEKGK 92 (499) T ss_pred HHHHHHHHHHHHHHHH--HHHHHHhcc-cc-chhcCCcCcCC---CCcceeecchHHHHHHHHhhhhcccCceeecCChh Confidence 2333332222111100 001111110 00 00000000000 001111123344456666655545565543221 Q ss_pred hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCce----------------eEEEEeccccceeeecCCCce Q lcl|Aclame:pro 79 NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGAD----------------MKWEYLRPSQVNTYYFEYENG 142 (392) Q Consensus 79 ~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~----------------~~l~~l~~~~v~~~~~~~~~~ 142 (392) ....+.+-........+...+......+|.+|.++..+.+|.+ ..+..++|..+-+..+...+. T Consensus 93 ~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~p~~~~~v~~d~~~~ 172 (499) T protein:vir:10 93 NIDDILEVFNQIDIHKHDIELEKDLSVFGYGYELLYLKKTDPISVRDELGNEKLTPNTELKIEVIDPRATVVVCDDTVEH 172 (499) T ss_pred HHHHHHHHHhhcCHhHHHHHHHHHHHhcCceEEEEEecccccccccccccccccccccceEEEEEcccceEEEecCCCCc Confidence 1111211111223445677788889999999999988877743 346677777776665543321 Q ss_pred --EE-E-EEE-ecCCcce---eeEEEecceEEEecCC----------------Cc---------cccccCCCHHHHHHHH Q lcl|Aclame:pro 143 --MY-Y-NIT-FDDPKIE---PILQAPQSDLIHMKLL----------------SI---------DGGKTGISPLYSLRRE 189 (392) Q Consensus 143 --~~-~-~~~-~~~~~~~---~~~~~~~~~vih~~~~----------------~~---------~~~~~G~s~l~~~~~~ 189 (392) .+ . ++. .+..... ....+.++.+.++... ++ .+...|.|-+..+... T Consensus 173 ~~~~~i~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~d~e~v~~l 252 (499) T protein:vir:10 173 DPLFAVFTQEKKDLEGNTNGYSITVYMPQRIVEYRTKTTMEVSANDPIVYDGENLFGAVPIIEFRNNEERQGDFEQLISL 252 (499) T ss_pred ceEEEEEEEEEeecCCCceEEEEEEEeCCeEEEEEecCCccccCcceecccccCCCCccceEEecCCCCCCCchHhHHHH Confidence 11 1 111 1100000 1111223333322100 00 0112467778877778 Q ss_pred HHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceee--ccCCceEEeccCChhhHHHHHH Q lcl|Aclame:pro 190 SKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVV--LDDLEEFTALEIKSNVAQLLSQ 267 (392) Q Consensus 190 i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v--l~~g~~~~~l~~~~~d~~~~e~ 267 (392) ++..+.+.....+.++..+.|-.+++-.......+. .... ..+++.. .++|.+++.+........+... T Consensus 253 iD~~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~-~~~~--------~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 323 (499) T protein:vir:10 253 IDAYNLLQTDRISDKEAFVDALLVTFGFGLGDDKDD-IQRL--------KRGAIEAPPREEGADIEWLTKSFDETQVNLL 323 (499) T ss_pred HHHHHHHHHHHHHHHHHhcCceeeeecCccccccch-hhhh--------hhcceeccCCCCCCcceEEeccCCHHHHHHH Confidence 887777766666666777777766653221111111 1110 1122222 2455566555544444445666 Q ss_pred HHHHHHHHHHHhcccHH---HcCCcccccch----------HHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhccch Q lcl|Aclame:pro 268 TDWTSKQYAKVYGLPDS---YIGGQGDQQSS----------IQQISGMYASALNRYLRPAISELEYKLS----DHISVNM 330 (392) Q Consensus 268 ~~~~~~~Ia~~fgVP~~---~lg~~~~~~~~----------~~~~~~~~~~~l~p~l~~i~~~l~~~l~----~~~~~d~ 330 (392) .+...+.|...-++|.. -+++..++.+- .+..+..+...+.-.++.+...++..-. ..+++.+ T Consensus 324 ~~~l~~~I~~~s~~p~~~~~~~~gn~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~d~~~i~i~f 403 (499) T protein:vir:10 324 SQSIENDIHKISYVPNMNDEKFMGNVSGEAMKFKLFGLENLLSIKQRYFFDGLRRRLKLIQTIVNIKGANDDASGCKISL 403 (499) T ss_pred HHHHHHHHHHHhCcccCCchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceEEe Confidence 67777788777777742 22221111100 0111223333333333333333221100 0122222 Q ss_pred hhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCc---cccccc---------------CCCCCCC---CCCCC Q lcl|Aclame:pro 331 RPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPK---DLPAPE---------------NTNKKTT---GQSNE 389 (392) Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~~~---------------~~~~~~~---gd~~~ 389 (392) ..-+..+..+.+..+.++ .|+++..-+.+++ |+..+ |+.++. +..+..+ ++.+. T Consensus 404 ~~~~p~n~~e~~~~~~kl--~g~iS~et~~~~l---~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (499) T protein:vir:10 404 VANIPSNLSDVVNNVKNA--DGIIPRKYTYSWL---PDVDNPQDVIDEMNQQDAETIKKNQEALRGQDPDRLELEDKQDD 478 (499) T ss_pred CCCCCCCHHHHHHHHHHH--hccCChHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcc Confidence 222233455666666666 5777776554443 32211 111110 0111111 11111 Q ss_pred CCC Q lcl|Aclame:pro 390 PVP 392 (392) Q Consensus 390 p~p 392 (392) +-| T Consensus 479 ~~~ 481 (499) T protein:vir:10 479 SSE 481 (499) T ss_pred cCC Confidence 111 No 214 >protein:vir:99781 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004303;genbank:gi:122891757;genbank:GeneID:4712336 Probab=95.71 E-value=0.0016 Score=35.93 Aligned_cols=381 Identities=8% Similarity=0.017 Sum_probs=155.2 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecch-- Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKK-- 78 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~-- 78 (392) .+..|.+.......+. -.....++. +........ ....... -+..-+...-..-.++..+.-+-.-|+.+.-.+ T Consensus 44 ~i~~~i~~~~~~~~~r-~~~l~~Yy~-g~~~i~~~~-~~~~~~~-~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d~~ 119 (511) T protein:vir:99 44 EVSKYIEHHMDYQRPR-LKVLSDYYE-GKTKNLVEL-TRRKEEY-MADNRVAHDYASYISDFINGYFLGNPIQYQDDDKD 119 (511) T ss_pred HHHHHHHHHHHhhHHH-HHHHHHHhc-ccCcccccc-Ccccccc-cCcceeecchHHHHHHHHHhhhcccCceeecCchH Confidence 1222222211110000 000011110 000000000 0000000 000111223344455666665655666653222 Q ss_pred hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCC--ceEEE-E-EEe---cC Q lcl|Aclame:pro 79 NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYE--NGMYY-N-ITF---DD 151 (392) Q Consensus 79 ~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~--~~~~~-~-~~~---~~ 151 (392) ....+.+=+..-........+..++..+|.+|.++.++.+|++ .+..++|..+.+..+... ..++. . +.. .+ T Consensus 120 ~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~a~~~vy~ded~~~-~i~~~~p~~~~~vyd~~~~~~~~~~vr~~~~~~~~~ 198 (511) T protein:vir:99 120 VLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDK 198 (511) T ss_pred HHHHHHHHHhhcCHhHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEEeeeccc Confidence 2222222122223445566778889999999999999888875 477888888888776542 22111 1 110 00 Q ss_pred Ccce---eeEEEecceEEEecCCCc-------------------------cccccCCCHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 152 PKIE---PILQAPQSDLIHMKLLSI-------------------------DGGKTGISPLYSLRRESKIQRASDRLTISS 203 (392) Q Consensus 152 ~~~~---~~~~~~~~~vih~~~~~~-------------------------~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~ 203 (392) .... ....+.++.+.+++.... .+...|.|-+..+...++....+..-..+. T Consensus 199 ~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~ 278 (511) T protein:vir:99 199 TDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANY 278 (511) T ss_pred CccceEEEEEEEeCCcEEEEEecCCccccccccccccccCCCCccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHH Confidence 0000 011233333333321100 001247788888888887777766555555 Q ss_pred HHccCCcceEEeeCCCCCchHHHHHHHHHHHhcc---ccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 204 LNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKR---SRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYG 280 (392) Q Consensus 204 ~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fg 280 (392) ++..+.|-.+++-.......+............. ...+...-.++|.+++-++....+..+....+...+.|+..-+ T Consensus 279 ~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~ 358 (511) T protein:vir:99 279 MSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTN 358 (511) T ss_pred HHHhhchhhhhccCcccCchhhcccccccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhC Confidence 5555556555443222111111000000000000 0011112234555666555544445556777888889999999 Q ss_pred ccHHHcCCcccccchHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhh-------hhhccchhhhhhcChH Q lcl|Aclame:pro 281 LPDSYIGGQGDQQSSIQQISG--------------MYASALNRYLRPAISELEYKLS-------DHISVNMRPAIDPLGD 339 (392) Q Consensus 281 VP~~~lg~~~~~~~~~~~~~~--------------~~~~~l~p~l~~i~~~l~~~l~-------~~~~~d~~~~~~~~~~ 339 (392) +|..-.+..+ ++.+..+.+. .+...+.-.++.|...+...-. ..+++.+..-+..+.. T Consensus 359 ~P~~~~~~~~-gn~Sg~Alk~~~~~l~~ka~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~i~f~~~~p~n~~ 437 (511) T protein:vir:99 359 TPNMKDDNFS-GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDVSKDFNTVRYVYNRNLPKSLI 437 (511) T ss_pred Cccccccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccceEEeCCCCCcCHH Confidence 9886554322 1222222222 2222222222223222221110 0122222222223445 Q ss_pred HHHHHHHHHHhCCccCHHHHHHHHHhCCCCCc---ccccc------------cCCCCCCCC-CCCCCCC Q lcl|Aclame:pro 340 NYLSTISTATRWGALAENQATFVLQEAGYIPK---DLPAP------------ENTNKKTTG-QSNEPVP 392 (392) Q Consensus 340 ~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~~------------~~~~~~~~g-d~~~p~p 392 (392) +.+..+.++ .|+++.--+.+++ |+.++ |+..+ +.....+++ +..+..+ T Consensus 438 e~~~~~~kl--~GiiS~et~l~~l---~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (511) T protein:vir:99 438 EELKAYIDS--GGKISQTTLMSLF---SFFQDPELEVKKIEEDEKESIKKAQKNMYQDPRNINDDEQDD 501 (511) T ss_pred HHHHHHHHH--hccCCHHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCC Confidence 566666665 4788876665543 43322 11111 011111111 1111111 No 215 >protein:vir:107112 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950601;genbank:gi:119953681;genbank:GeneID:4643121 Probab=95.17 E-value=0.0026 Score=34.75 Aligned_cols=372 Identities=10% Similarity=0.042 Sum_probs=148.9 Q ss_pred CcchhhhhhcccccccccccccccccCcch---hhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecc Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGND---AQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKK 77 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~ 77 (392) .+-.+.+........ -.....++..... ............ ...+..-+.++-...+++..+.-+-.-|++..-. T Consensus 30 ~i~~~i~~~~~~~~r--~~~~~~Yy~g~~~i~~~~~~~~~~~~~~-~~~~~~ki~~n~~k~ivd~~~~yl~g~p~~~~~~ 106 (478) T protein:vir:10 30 MILRLVREHKENIDN--ITMGERYYNHHPDILDAPFKRDVNGDYD-ETKPDWRMYTNYHQNLVDQKVAYAVANPVTFGVD 106 (478) T ss_pred HHHHHHHHHHHHHHH--HHHHHHHhcccccccccchhhhcccccc-cccccceeccchHHHHHHHHhhhhcccCceeecC Confidence 222221111100000 0000000000000 000000000000 0000111223445566777776666666664322 Q ss_pred hh--hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCC-CceE-EEEEEecCCc Q lcl|Aclame:pro 78 KN--QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEY-ENGM-YYNITFDDPK 153 (392) Q Consensus 78 ~~--~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~-~~~~-~~~~~~~~~~ 153 (392) +. ...+..=. ..........+......+|.+|+.+..+.+|++ .+..++|..+.+..+.. .+.+ +....+.... T Consensus 107 ~~~~~~~l~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~~~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~ 184 (478) T protein:vir:10 107 NDKALKQIQHTL-NHKWDDKLVDILTAASNKGIEWVQPYVDEEGEF-KTFRVPAEQAVPIWTNKERDELQAFIRVYELDG 184 (478) T ss_pred ChHHHHHHHHHH-hccHHHHHHHHHHHHhhCCeEEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEeeeC Confidence 21 11111000 013445556677888999999999988888875 47778888887776532 2222 2111111111 Q ss_pred ceeeEEEecceEEEecCCC-------------------------c---------cccccCCCHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 154 IEPILQAPQSDLIHMKLLS-------------------------I---------DGGKTGISPLYSLRRESKIQRASDRL 199 (392) Q Consensus 154 ~~~~~~~~~~~vih~~~~~-------------------------~---------~~~~~G~s~l~~~~~~i~~~~~~~~~ 199 (392) ......+..+.|.+++... . .+...|.|-+..+...++....+... T Consensus 185 ~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liDa~~~~~S~ 264 (478) T protein:vir:10 185 AERVEYWTKDDVTFYELKEGQLIPDFYRSEDHIQPHYYQGNKLMSWGRVPFIPFKNNPQEVSDLFMYKTIIDALDKRLSD 264 (478) T ss_pred ceEEEEEeCCcEEEEEecCCeeeccccccccccccceecccccccCCcceEEEeccCCCCCCcHHHHHHHHHHHHHHHHH Confidence 1111112223332221100 0 01124778888888888877776655 Q ss_pred HHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeec--cCCceEEeccCChhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 200 TISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVL--DDLEEFTALEIKSNVAQLLSQTDWTSKQYAK 277 (392) Q Consensus 200 ~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl--~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~ 277 (392) ..+.++..+.|-.+++--.. ............ .+++.+ ++|.+.+-+........+.+..+...+.|+. T Consensus 265 ~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~ 335 (478) T protein:vir:10 265 TQNTFDESVELIYILKGYEG-EDMKDFMHNLKY--------YKAISVAGESGSGVDTIKVEVPIDSVKEYTKMLRDYIIE 335 (478) T ss_pred HHHHHHHhhCcceeeecCCc-ccccchhhhhhh--------CceeEecCCCCCcceEEeecCCHHHHHHHHHHHHHHHHH Confidence 56555655556555443211 111111111111 122322 2333444344444445567777888888988 Q ss_pred HhcccHHHcCCcccccchHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhh-hhhccchhhhhhcChHHHH Q lcl|Aclame:pro 278 VYGLPDSYIGGQGDQQSSIQQISGM--------------YASALNRYLRPAISELEYKLS-DHISVNMRPAIDPLGDNYL 342 (392) Q Consensus 278 ~fgVP~~~lg~~~~~~~~~~~~~~~--------------~~~~l~p~l~~i~~~l~~~l~-~~~~~d~~~~~~~~~~~~~ 342 (392) .-++|..-.+..+ ++.+..+++.. +...+.-.++.+.+.+..... ..+.+.+..-+..+..+.+ T Consensus 336 ~s~~p~~~~~~~~-~n~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~d~~~i~i~f~~~~p~~~~e~~ 414 (478) T protein:vir:10 336 FGQGVDFQQDKFG-NSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYRLDVRVQDIEITFNFNVMVNELENS 414 (478) T ss_pred HhCCcCcCccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccceEEeCCCCCCCHHHHH Confidence 8888864332211 12222233222 222222222222211111000 0122222222223445555 Q ss_pred HHHHHHHhCCccCHHHHHHHHHhCCCCCc---ccccc--------cCCCCCCCCCCCCCCC Q lcl|Aclame:pro 343 STISTATRWGALAENQATFVLQEAGYIPK---DLPAP--------ENTNKKTTGQSNEPVP 392 (392) Q Consensus 343 ~~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~~--------~~~~~~~~gd~~~p~p 392 (392) ..+..+ .|+++..-+.+++ |+..+ |+..+ ...+...++..++.-+ T Consensus 415 ~~~~~~--~g~iS~et~i~~~---~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~d~~~~ 470 (478) T protein:vir:10 415 QIAMNS--TGLLSKETILGNH---SWVQDPVAEMERIEQENIELNQQLPDIEEGLNDEQQR 470 (478) T ss_pred HHHHHH--hCCCChHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHhccccCCCCcccccc Confidence 555554 6788876554433 43321 11111 1122222222222222 No 216 >protein:vir:3609 Length: 452 # NCBI annotation: ORF32 # Family: family:all:125 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112695;genbank:gi:13786563;genbank:GeneID:921063 Probab=93.99 E-value=0.0057 Score=32.87 Aligned_cols=358 Identities=10% Similarity=0.013 Sum_probs=150.8 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeee--cch Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAE--KKK 78 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~--~~~ 78 (392) ++-.+.+..+....+ -.....++. +.. .+...-...... +..-+..+-....|+..+.-+-.-|+... +.. T Consensus 21 ~i~~~i~~~~~~~~r--~~~~~~Yy~-g~~-~i~~~~~~~~~~---~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~d~~ 93 (452) T protein:vir:36 21 VVTKFMEKHKLEVAR--YEYLKNMYL-GIM-AIDDEPAKDSWK---PDNRLAVNFTKYIVDTFTGYFNGIPVKKSHSDKE 93 (452) T ss_pred HHHHHHHHHHHHHHH--HHHHHHHhc-ccc-ccccCccccccC---ccceeecchHHHHHHHHhhhhcccCceeecCChh Confidence 222221111110000 000001100 000 000000000000 01112223344455655555544555442 222 Q ss_pred hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCc--eEEE-EEEecCCcce Q lcl|Aclame:pro 79 NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYEN--GMYY-NITFDDPKIE 155 (392) Q Consensus 79 ~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~--~~~~-~~~~~~~~~~ 155 (392) ....+.+-............+..+.+.+|.+|.++..+.+|++. +..++|..+.+..+.... ..+. .++....... T Consensus 94 ~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~-i~~~~p~~~~~v~d~~~~~~~~~~i~~~~~~~~~~ 172 (452) T protein:vir:36 94 ILTKLQEFDNLNDMEDEESELAKMACIYGRAFEFLYQDEDTQTN-VVYNSPENMFMVYDDTVKQEPLFAVRYGVDEDKKL 172 (452) T ss_pred HHHHHHHHHhhcChhHHHHHHHHHHHhcCeEEEEEEecCCCeeE-EEEEcccceEEEEcCCCCCceEEEEEEEEecCceE Confidence 22222222222244455667788889999999999998888764 677888888877665321 1211 1111111111 Q ss_pred eeEEEecce-------------------------EEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCc Q lcl|Aclame:pro 156 PILQAPQSD-------------------------LIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNV 210 (392) Q Consensus 156 ~~~~~~~~~-------------------------vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~ 210 (392) ....+..+. |+++++ ...|.|-+......++....+.....+.++..+.| T Consensus 173 ~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----~~~g~sd~e~v~~liDa~d~~~s~~~~~~~~~~~p 247 (452) T protein:vir:36 173 QGEVYTLLETIKISGENDEISFGEGTYNPYPDLPVVEFYF-----NEERMSIFESVISLVNAFNKAISEKANDVDYFSDQ 247 (452) T ss_pred EEEEEecCeEEEEEEcCCceEEecceeccCCcccEEEecC-----CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCc Confidence 111122222 222222 12477778777777777777766666666676777 Q ss_pred ceEEeeCCCCCchHHHHHHHHHHHhccccCCceeecc-----CCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHH Q lcl|Aclame:pro 211 PGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLD-----DLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSY 285 (392) Q Consensus 211 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~ 285 (392) -.++.-. ...++... .... ++++.++ .+.+++-+........+....+...+.|+..-++|..- T Consensus 248 ~~~~~g~--~~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~ 316 (452) T protein:vir:36 248 YLTFLGA--AVEEEDLK-NIRS--------NRVINYYADGEGKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMVANIS 316 (452) T ss_pred eeEeecC--CcCchhhh-hhhh--------cceEEecCCCCccCCcceeEeecCCHHHHHHHHHHHHHHHHHHhCccccC Confidence 6665532 11111111 1111 1222222 12233333333334455667778888898888888643 Q ss_pred cCCcccccchHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhh----hhhccchhhhhhcChHHHHHHHHH Q lcl|Aclame:pro 286 IGGQGDQQSSIQQIS--------------GMYASALNRYLRPAISELEYKLS----DHISVNMRPAIDPLGDNYLSTIST 347 (392) Q Consensus 286 lg~~~~~~~~~~~~~--------------~~~~~~l~p~l~~i~~~l~~~l~----~~~~~d~~~~~~~~~~~~~~~~~~ 347 (392) .+.. ++.+..+.+ ..+...+...++.|..-+...-. ..+.+.+..-+..+..+.+..+.+ T Consensus 317 ~~~~--gn~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~i~i~f~~~~p~d~~~~a~~~~k 394 (452) T protein:vir:36 317 DESF--GSSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLFCELSTNVSNKDSWKDIEYTFTRNEPKDIKEQAETANI 394 (452) T ss_pred cccc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceEEeCCCCCcCHHHHHHHHHH Confidence 3222 122222222 22233333333333322221100 112222222333355556666666 Q ss_pred HHhCCccCHHHHHHHHHhCCCCCc---ccccc------------------cCCCCCCCCCCCC Q lcl|Aclame:pro 348 ATRWGALAENQATFVLQEAGYIPK---DLPAP------------------ENTNKKTTGQSNE 389 (392) Q Consensus 348 ~~~~g~~t~nE~R~~l~~~g~~~~---e~~~~------------------~~~~~~~~gd~~~ 389 (392) + .|+++..-+.++ .|+..+ |+..+ ++.....+.+++| T Consensus 395 ~--~g~iS~et~~~~---~~~~~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e 452 (452) T protein:vir:36 395 L--MGITSQETALSV---ISVIPDVQAEMEKIKKEEASTAIFDKDKQPSEKGTDTVVSETNEE 452 (452) T ss_pred H--hccCChHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCcccccCccccCC Confidence 5 577776544443 343321 11110 1112222333444 No 217 >protein:vir:78083 Length: 537 # NCBI annotation: gp3 # Family: family:all:125 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468787;genbank:gi:157325368;genbank:GeneID:5601845 Probab=90.78 E-value=0.019 Score=30.01 Aligned_cols=368 Identities=12% Similarity=0.032 Sum_probs=146.3 Q ss_pred Ccch-hhh-hhcccc---cccccccccccccCcchhhhhhhc--cCCCCcc----cchhhhhcchHHHHHHHHHHHhhhh Q lcl|Aclame:pro 1 MILP-ILN-FINQTN---DPPEAGSVQSYFPDGNDAQIMESL--LGDNNEW----VSARAALRNSDLFSIILQLSSDLAI 69 (392) Q Consensus 1 m~Mg-~~n-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~al~~~~v~~~i~~ia~~ia~ 69 (392) |..+ ||. .+.+.. ..........++. +...-..... .+..+.. ..+..-+.+.-..-.++..+.-+-+ T Consensus 11 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~YY~-g~h~Il~r~~~~~~~~~~~~~d~~~~nnki~~nf~k~Ivd~~~~yl~G 89 (537) T protein:vir:78 11 DQLGGLLNTEITTYMASNHIKWAHIGENYYN-QENDIEKSRIFYMNDKGQLREDNYASNVKISHGFFTELVDQLAQYLLS 89 (537) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccchhhhcccccccccccccccccccccccccchHHHHHHHHhhhhcc Confidence 1111 110 010000 0000000011111 1100000000 0000000 0011112222233445555555555 Q ss_pred Cceeeecc--hhhh---hcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEE Q lcl|Aclame:pro 70 VKINAEKK--KNQG---IIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMY 144 (392) Q Consensus 70 lp~~~~~~--~~~~---~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~ 144 (392) -|++..-. +... .+..=+. .........+..++..+|.||.++..+.+|.+. +..++|..+-+..+..+.... T Consensus 90 ~Pv~~~~~d~~~~e~~~~l~~~~~-~~~~~~~~el~~~~s~~G~ay~~~y~de~~~~~-~~~i~p~~~~pv~d~~~~~~~ 167 (537) T protein:vir:78 90 NGVEVKVKDEDNTQLDEILQEYFD-EDFQATIDTLVTNASKKGFEGIFARTTSEGKLK-FQTVDGLTLIPVFDDYGVLKM 167 (537) T ss_pred cCceeecCcchhHHHHHHHHHHhh-ccHHHHHHHHHHHHhhcCeeEEEeeecCCCceE-EEEEccceeEEEEcCCCCcee Confidence 57665321 1111 1111111 122334456677888999999999999888654 677888887777665433211 Q ss_pred --EEEE--ecC---C---cceeeEEEecceEEEecCCC------------------------------------------ Q lcl|Aclame:pro 145 --YNIT--FDD---P---KIEPILQAPQSDLIHMKLLS------------------------------------------ 172 (392) Q Consensus 145 --~~~~--~~~---~---~~~~~~~~~~~~vih~~~~~------------------------------------------ 172 (392) ..+. ... . .......+.++.+.+++... T Consensus 168 ~~~~y~~~~~~~~~~~~~~~~~~evyt~~~i~~y~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 247 (537) T protein:vir:78 168 IIRWYSEIRYSTKQQSTETIWHADVWNEEAVCYYIQDDEGVSTTYKLDEAYNPNPAPHVLAIEESTDADFEDTDGYQVLG 247 (537) T ss_pred EEEEEeeeeccccccCcceEEEEEEEcCCcEEEEEecCCcccccccccccccccccceeeeccccccccccccccccccc Confidence 1110 000 0 00011123333333322100 Q ss_pred ----------ccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCc Q lcl|Aclame:pro 173 ----------IDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGG 242 (392) Q Consensus 173 ----------~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 242 (392) ..+...|.|-+......++....+.....+.++.-+.|-.++.--. ....++..+.... .+ T Consensus 248 ~~~g~iPvv~f~nn~~~~sd~e~v~~LiDayd~~~S~~an~~~~~~~~ilvi~g~~-~~~~~~~~~~l~~--------~~ 318 (537) T protein:vir:78 248 RSYSKFPFQLLYNNKDGMSDVKRVKSIIDDYDVMNCFLSNNLQDFSEAIYVVKGFS-GDSTDKLRQNIKA--------KK 318 (537) T ss_pred cCCcceeEEEeccCccCCCchhhhHHHHHHHHHHHHhhhhHHHHhcCceeeeecCC-CccchhHHHHHhh--------cC Confidence 0001247788888888888888887767777666555555544221 1222222221111 12 Q ss_pred eeec-cC--CceEEeccCChhhHHHHHHHHHHHHHHHHHh---cccHHHcCCcccccchHHHH--------------HHH Q lcl|Aclame:pro 243 PVVL-DD--LEEFTALEIKSNVAQLLSQTDWTSKQYAKVY---GLPDSYIGGQGDQQSSIQQI--------------SGM 302 (392) Q Consensus 243 ~~vl-~~--g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~f---gVP~~~lg~~~~~~~~~~~~--------------~~~ 302 (392) ++.+ ++ +++|.....+ +.......+...+.|...- ..+....|. .+..++ +.. T Consensus 319 ~i~v~~d~~~v~~l~~~~~--~~~~e~~ld~L~~~I~~~s~~~~~~~~~~gn-----~SGvAlk~~~~~l~~ka~~ke~~ 391 (537) T protein:vir:78 319 MIGVNGDNAGMEIQTVSIP--YEARKAKMDIDVENIYRSGMGFNSTAVGDGN-----VTNVVIKSRYTLLAMKARKMETS 391 (537) T ss_pred ceeecCCCCceeEEEecCC--HHHHHHHHHHHHHHHHHhcCCCCCccccccC-----CcHHHHHHHHhhHHHHHHHHHHH Confidence 2222 23 3555444432 2222333444445554433 333322221 122222 233 Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-----hhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcc----- Q lcl|Aclame:pro 303 YASALNRYLRPAISELEYKLSD-----HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKD----- 372 (392) Q Consensus 303 ~~~~l~p~l~~i~~~l~~~l~~-----~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e----- 372 (392) +...+.-.++.|.+.++.+-.. .+.+.+..-+-.+..+.+..+..+...|+++..-+.+.+ |+..+. T Consensus 392 f~~~l~~~~~~i~~~~~~~~~~~~d~~~i~i~f~~~~P~n~~e~a~~~~~l~~~giiS~eT~l~~~---p~vdd~e~ek~ 468 (537) T protein:vir:78 392 LRKVLRWCADMVVSDIALRGLGEYDSNDICFEIEPHVLANELDIATTRKTEAETEALKIGNIMTVA---PRIGDDETLKL 468 (537) T ss_pred HHHHHHHHHHHHHHHHhhcCCcccccceeeEEeccCCCCCHHHHHHHHHHHHhcCcchHHHHHHhC---CCCCCHHHHHH Confidence 4444444444444444322111 122233333334556777888888889998877554432 111100 Q ss_pred --------------------------cccccCCCCCCC-CCCCCCCC Q lcl|Aclame:pro 373 --------------------------LPAPENTNKKTT-GQSNEPVP 392 (392) Q Consensus 373 --------------------------~~~~~~~~~~~~-gd~~~p~p 392 (392) .+..+ +-..+ ++.++|.| T Consensus 469 ~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 513 (537) T protein:vir:78 469 IAEELDLDYNELKDALAEQDAQSLDVSPDVQ--AMLDGLPVNANQPP 513 (537) T ss_pred HHHHHHhhhhhhhhhhhhhcccccCcCcchh--hhcCCCCCCCCCCC Confidence 00000 00001 12222222 No 218 >protein:vir:102668 Length: 547 # NCBI annotation: Hypothetical protein # Family: family:all:481 # MgeID: mge:1624 # MgeName: VP2 # Cross-refs: genbank:acc:YP_024419;genbank:gi:48696640;genbank:GeneID:2948135 Probab=89.73 E-value=0.025 Score=29.40 Aligned_cols=330 Identities=12% Similarity=0.054 Sum_probs=142.3 Q ss_pred Ccch--hhhhhcccccc---ccccccccc---ccCcchhhhhhhccCCCCcc----cchhhhhcchHHHHHHHHHHHhhh Q lcl|Aclame:pro 1 MILP--ILNFINQTNDP---PEAGSVQSY---FPDGNDAQIMESLLGDNNEW----VSARAALRNSDLFSIILQLSSDLA 68 (392) Q Consensus 1 m~Mg--~~n~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~al~~~~v~~~i~~ia~~ia 68 (392) ++.. +++-....... .....+.+. ......+.+...+++.+.-+ +..........|..-.+.+.+.+ T Consensus 32 lP~~~~~~~~~~~~~~~~~~~~~~i~dst~~~a~~~Las~L~~~ltPp~~~WF~l~~~d~~~~~~~~v~~~L~~ve~~i- 110 (547) T protein:vir:10 32 MPMRSDFFSDLRSEGSINWNQNREVFDSTAGDGLETLSSSLHGSLTSPATKWFELAFRDKELNSDDECRKWLENATHDV- 110 (547) T ss_pred cccccccccCCCCCcccccccccccccchHHHHHHHHHHHHHHhhcCCCCcccccccCCccccchHHHHHHHHHHHHHH- Confidence 3332 33221111000 000000000 00000011111111111000 11111111122222222222222 Q ss_pred hCceeeecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccC-CceeEEEEeccccceeeecCCCceEEEEE Q lcl|Aclame:pro 69 IVKINAEKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNAN-GADMKWEYLRPSQVNTYYFEYENGMYYNI 147 (392) Q Consensus 69 ~lp~~~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~-G~~~~l~~l~~~~v~~~~~~~~~~~~~~~ 147 (392) ...+.+-|. +.=+..+..+|..+|++.+++..+.+ ...+.+..++...+.+..+..|.....+. T Consensus 111 -----------~~~l~~snf----~~~~~~~~~~L~~~G~a~l~~~~d~~~~~~~r~~~~pl~~~~v~~d~~G~v~~i~r 175 (547) T protein:vir:10 111 -----------YSALQDSNF----NLEANETYIDLCGYGNAIMVEEEDEDEEGSVVFQSSPIQDSYFEEDSRGQVVNFYR 175 (547) T ss_pred -----------HHHHHhcCc----HHHHHHHHHHHHhHCcEeEEeccCCCCCCceeEEEeecceEEEeeCCCcCeeeeee Confidence 111222232 22244566788899999999876532 22344555555555555554443211100 Q ss_pred --E----------------------------------------e--cCCc----------------------------ce Q lcl|Aclame:pro 148 --T----------------------------------------F--DDPK----------------------------IE 155 (392) Q Consensus 148 --~----------------------------------------~--~~~~----------------------------~~ 155 (392) . + .+.. .. T Consensus 176 ~~~~t~~qi~~~fg~~~l~~~v~~~~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~~p~~s~~~e~~~~~~~l 255 (547) T protein:vir:10 176 VFRWTPAQIYDRFGDEGTPEAIIKKAKEASNQAALKQEVVMCVFTRYDKKQNRNAGTVLAPTERPFGKKWILKEGAVQLG 255 (547) T ss_pred eeeccHHHHHHhcCcccCCHHHHHHHhcCCCcccceEEEEEEEeeccCCCCCccccceeeccccceeEEEEEecCceeee Confidence 0 0 0000 00 Q ss_pred eeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHh Q lcl|Aclame:pro 156 PILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFM 235 (392) Q Consensus 156 ~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 235 (392) ..-.+....++..|....+|-.||.||+..+...+...+.+.+...........|..++..++... . .+ T Consensus 256 ~esg~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~pp~~v~~~g~~~-~-------~~--- 324 (547) T protein:vir:10 256 EEGGYYEMPAYAIRWRKSAGSQWGFGPSHLALPDVLTANRYVELVLRSSEKVIDPAIMVTERGLIS-D-------ID--- 324 (547) T ss_pred ecCCcccCCeeeeeeeecCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceecccccccc-c-------ce--- Confidence 000011223555666666777899999999999999999998888887777777776544332211 1 00 Q ss_pred ccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchH-HHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 236 KRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSI-QQISGMYASALNRYLRPA 314 (392) Q Consensus 236 ~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~-~~~~~~~~~~l~p~l~~i 314 (392) ...|++.+.+..-.++++...+.-....+..+.....|-.+|=+....+-....-|..+ ..........|.|....+ T Consensus 325 --~~pgg~~~~~~~~~v~pl~~~~~~~~~~~~i~~~~~rI~~af~~d~~~~~~~~~~TAtEV~~r~~E~~~~LG~v~~rl 402 (547) T protein:vir:10 325 --LGASGLTVVRDMESMKPFESRARFDVSSIQLTDLRSAVRRIYYVDQLQMKDSPAMTATEVQVRYELMQRLLGPTLGRL 402 (547) T ss_pred --ecCCeeeecCCcccceeeecccchHHHHHHHHHHHHHHHHHhhhhhhhcCCCccccHHHHHHHHHHHHHHhhHHHHHH Confidence 11355666666667777765543333356677778889999887665443322223332 233445566778888777 Q ss_pred HHHHHHHhhhhhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCC---ccccc-------ccCCCCCCC Q lcl|Aclame:pro 315 ISELEYKLSDHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIP---KDLPA-------PENTNKKTT 384 (392) Q Consensus 315 ~~~l~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~---~e~~~-------~~~~~~~~~ 384 (392) .++|-.-|... .+..+.+ .|..| .++-. .+...++.- T Consensus 403 ~~E~l~Pli~r------------------~~~il~r---------------~g~lP~~p~~l~~~~~~~~~v~~is~Lar 449 (547) T protein:vir:10 403 ENDFLSPMIQR------------------TFNIRFR---------------AGKLGELPSKLLESGKAAMDIVYTGPLSR 449 (547) T ss_pred HHHHHHHHHHH------------------HHHHHHh---------------cCCCCCCchhhhccCcceEEEEeccHHHH Confidence 77764332110 1111222 22221 11100 000011000 Q ss_pred C-----------------CCCCCCC Q lcl|Aclame:pro 385 G-----------------QSNEPVP 392 (392) Q Consensus 385 g-----------------d~~~p~p 392 (392) + .--+.-| T Consensus 450 aq~~~~~~~i~~~~~~v~~laq~~P 474 (547) T protein:vir:10 450 AQKIDQAASIERWAGSTAQLAEINP 474 (547) T ss_pred HHHHHHHHHHHHHHHHHHHhhccCh Confidence 0 0001223 No 219 >protein:vir:94956 Length: 452 # NCBI annotation: putative phage structural protein # Family: family:all:584 # MgeID: mge:1538 # MgeName: Xp15 # Cross-refs: genbank:acc:YP_239276;genbank:gi:66392058;genbank:GeneID:5076601 Probab=87.97 E-value=0.035 Score=28.55 Aligned_cols=360 Identities=11% Similarity=0.015 Sum_probs=153.0 Q ss_pred chhh-------------hhhccc----ccc-cccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHH Q lcl|Aclame:pro 3 LPIL-------------NFINQT----NDP-PEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLS 64 (392) Q Consensus 3 Mg~~-------------n~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia 64 (392) |.+- .+++-. ..- .....+-++.+.-.. ..+.. .- ..|.-.+.+...++.++ T Consensus 1 m~V~~~hp~y~a~~~~W~~~rd~~~G~~~~r~~g~~YLpk~~~E~~-~~Y~~--------rl-~rA~~~n~~~~t~~~~~ 70 (452) T protein:vir:94 1 MPIETKHPEYLAYENDWIDCRVASLGQREVKKKGVRFLPKLSGQTD-DMYNA--------YK-QRALFYSITSKTLSALS 70 (452) T ss_pred CCCCCcCHHHHHHHHHHHHHHHHhcChHHHHcCCcccCCCCCCCCH-HHHHH--------HH-hhccCCchHHHHHHHHh Confidence 3321 001000 000 000000001000000 00000 00 01112355667777777 Q ss_pred HhhhhCceeeecchh-hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCC-ceeEEEEeccccceee-ecCCCc Q lcl|Aclame:pro 65 SDLAIVKINAEKKKN-QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANG-ADMKWEYLRPSQVNTY-YFEYEN 141 (392) Q Consensus 65 ~~ia~lp~~~~~~~~-~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G-~~~~l~~l~~~~v~~~-~~~~~~ 141 (392) ..+-+-|+.+.-.+. ..++. =-...+-.+|.+.++...+.+|-+++++..+..| +|. +..+.|..|-=+ .+..++ T Consensus 71 G~vf~k~p~~~~p~~l~~~~~-D~~G~~L~~~~~~~~~~~l~~G~~~ilVD~p~~g~rPy-~~~~~~~~Ii~W~~~~~g~ 148 (452) T protein:vir:94 71 GMVLDQPPVITHPDAMSKYFE-DQSGIQFYEVFTRAVEETLLMGRVGVFIDRPLTGGDPY-ISVYTTENILNWEEDEDGR 148 (452) T ss_pred chhhcCCceecccHHHHHHHh-cccCCCHHHHHHHHHHHHHhcCeEEEEEeeccCCCceE-EEEechhhhcCccccccCC Confidence 777666665422211 11111 1346788999999999999999999999877665 343 233333322111 111111 Q ss_pred eE------------------------EEEEEecCC----------ccee-----eEE-------EecceEEEecCCCccc Q lcl|Aclame:pro 142 GM------------------------YYNITFDDP----------KIEP-----ILQ-------APQSDLIHMKLLSIDG 175 (392) Q Consensus 142 ~~------------------------~~~~~~~~~----------~~~~-----~~~-------~~~~~vih~~~~~~~~ 175 (392) .. +.......+ ..+. ... +..=.++.+ +....+ T Consensus 149 l~~v~lre~~~~~d~~d~f~~~~~~~yRvL~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~-~~~~~~ 227 (452) T protein:vir:94 149 LLMVVLREFYTVRDTADRYVQNIRVRYRCLELVDGLLQITVHETQDGKVWELAKTSTIQNVGVTMDYIPFFCI-TPSGLS 227 (452) T ss_pred eeEEEEEEEEEEecCCCcccceeEEEEEEEEEeCCeEEEEEEEccCCceeeeccceeecCCCcccceeEEEEE-cCCCCC Confidence 10 000000000 0000 000 000011111 122335 Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeeccC-Cc--eE Q lcl|Aclame:pro 176 GKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDD-LE--EF 252 (392) Q Consensus 176 ~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~-g~--~~ 252 (392) +..|.+|+..++..-........-....+...+.|-.++.--.. .. ....|+ +.++.+++ |. +| T Consensus 228 ~~~~~pPLl~LA~ln~~hy~~~sd~~~~l~~~~~P~l~~~g~~~--~~--------~i~iG~---~~~~~lpe~~~~~~y 294 (452) T protein:vir:94 228 MTPAKPPMIDIVDINYSHYRTSADLEHGRHFTGLPTPWITGAES--QS--------TMHIGS---TKAWVIPEVAAKVGF 294 (452) T ss_pred CCCCccchHHHHHHHHHHhcchhHHHHHHHHcccceeEeecCcC--CC--------ceEecc---cccccCCCCCCcceE Confidence 56788898877664333333333344455566677666653221 11 112233 34577774 64 56 Q ss_pred EeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCC-cccccchHHH-H-HHHHHHHHHHHHHHHHHHHHHHhh---hh- Q lcl|Aclame:pro 253 TALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGG-QGDQQSSIQQ-I-SGMYASALNRYLRPAISELEYKLS---DH- 325 (392) Q Consensus 253 ~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~-~~~~~~~~~~-~-~~~~~~~l~p~l~~i~~~l~~~l~---~~- 325 (392) .+.+.+.-... .+..+...+++ ...|- .++-. +...++..+. . .+-..+.|.-+...+++.+++.|- .. T Consensus 295 ie~~g~~i~~~-~~~l~~le~~m-~~~Ga--~ll~~~~~~~~s~ea~~~~~~~~~s~L~~~a~~~e~al~~~l~~~a~w~ 370 (452) T protein:vir:94 295 LEFTGQGLQSL-EKALSEKQAQL-ASLSA--RLIDNSTRGSEATETVKLRYMSETASLKSVTRAVEALLNKAYSCIMDME 370 (452) T ss_pred EccCchhHHHH-HHHHHHHHHHH-HHHHH--HhhccCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc Confidence 66665544322 22222222222 22222 23321 1111222221 1 122347778888888888877662 11 Q ss_pred -------hccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcc---cccccCCCCCCCCCCCCCC-C Q lcl|Aclame:pro 326 -------ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKD---LPAPENTNKKTTGQSNEPV-P 392 (392) Q Consensus 326 -------~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e---~~~~~~~~~~~~gd~~~p~-p 392 (392) +..+.++............+-.++.+|.++....++.|.+.|+...+ .+..++++.......|+|. | T Consensus 371 g~~~~~~v~~n~dF~~~~~~~~~~~al~~~~~~G~is~~t~~~~L~~~gvl~~~~e~~~i~~E~~~~~~~~~~~~~~~ 448 (452) T protein:vir:94 371 SMGGTLNIKLNSAFLDSKLTAAELKAWVEAYLSGGISKEIYIHALKVGKVLPPPGESMGVIPDPPAPEPSPSNTPPNP 448 (452) T ss_pred CCCCceEEEeccccccccCCHHHHHHHHHHHhcCCCcHHHHHHHHHhCCCCCCccCHHHHHHHhhccCcccCCCCCCC Confidence 22222222222222344556678899999999999999888876321 1222222211111122211 1 No 220 >protein:vir:104500 Length: 537 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214665;genbank:gi:61806306;genbank:GeneID:3294555 Probab=87.25 E-value=0.04 Score=28.25 Aligned_cols=373 Identities=13% Similarity=0.117 Sum_probs=152.0 Q ss_pred Ccchhhhhhccccc-ccccccccccccCcchhhhhhhccC--------CCCcc------cc-hhhhhcchHHHHHHHHHH Q lcl|Aclame:pro 1 MILPILNFINQTND-PPEAGSVQSYFPDGNDAQIMESLLG--------DNNEW------VS-ARAALRNSDLFSIILQLS 64 (392) Q Consensus 1 m~Mg~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~------~~-~~~al~~~~v~~~i~~ia 64 (392) |+-.||.|--+... ..... +..++....+......+ ..+.. |. -+..+.+|.|..||+-|. T Consensus 1 ~~~~lfg~~i~~~~~~~~~~---s~~~~~~~dg~~~~~~~~~~g~~~~~e~~~~~~~eLI~~YR~ma~~pEvd~Av~eIV 77 (537) T protein:vir:10 1 MAQQLFGFSLQRAKKVPKGP---SFVQKDSLDGSQPIVGGGYFGYSVDFDGTIRNDHELITRYREMVLNPECDSAVDDVV 77 (537) T ss_pred CccccccceeecccccccCC---cccCCCcccccceeecccccccccccccccchHHHHHHHHHHHhhccchhhHHHHhh Confidence 88888876444322 21111 22222221111111111 11111 11 134556899999999999 Q ss_pred HhhhhCc-----eeee--cch------------hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEeccc---CCcee Q lcl|Aclame:pro 65 SDLAIVK-----INAE--KKK------------NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNA---NGADM 122 (392) Q Consensus 65 ~~ia~lp-----~~~~--~~~------------~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~---~G~~~ 122 (392) +.+.-.. +.+. ..+ -+.++.--|-...+++ ++.+|...|..|..++-+. +.-.. T Consensus 78 neaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll~F~~~~~e----~fR~WYVDgRi~fhKiid~k~pk~GI~ 153 (537) T protein:vir:10 78 NETICGNFDDVPISIDLHNLKQSEKIKKLIRSEFDEILRLLDFDNRAYE----IFRRWYVDGRLFFHKVIDPKKPRQGLV 153 (537) T ss_pred cceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhH----HHhhheeeeEEEEEEEEeCCCccccce Confidence 9876442 2221 100 0111222233344444 4556678899998886432 33488 Q ss_pred EEEEeccccceeeecC-----CCce-------EEE----EEEecC----CcceeeEEEecceEEEecCCCcc--ccccCC Q lcl|Aclame:pro 123 KWEYLRPSQVNTYYFE-----YENG-------MYY----NITFDD----PKIEPILQAPQSDLIHMKLLSID--GGKTGI 180 (392) Q Consensus 123 ~l~~l~~~~v~~~~~~-----~~~~-------~~~----~~~~~~----~~~~~~~~~~~~~vih~~~~~~~--~~~~G~ 180 (392) +|..|+|..+..+... .+.. ++. ++.++. ...+..+.++.+- |++-+.... +..+.+ T Consensus 154 ELr~lDPr~i~~vR~i~~~~~~~~~~~~~~~~v~~~~~eyf~ynp~g~~~~~~~~vkI~~dA-I~y~hSGl~d~n~~~i~ 232 (537) T protein:vir:10 154 ELRYVDPRKIRKVTEYEAKRPEALRTQDLNQQLTQQSASYFLYNPKGLKNSTNQGMKIAPDS-IAYCHSGIQDLNKNMVL 232 (537) T ss_pred eeeeeCCccceeeEeecccCCccceEEecceeeeecccceeeeccccccccCCCceeccHhh-eeeecccceeCCCCeee Confidence 9999999998665431 1111 100 011110 0112335566643 344332211 122446 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCch-----------------------------HHHHHHHH Q lcl|Aclame:pro 181 SPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLS-----------------------------DKDKASRS 231 (392) Q Consensus 181 s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~-----------------------------~~~~~~~~ 231 (392) |-|..+.+.+....-++....-+=-..+.-+=|.-++=+.... ++..-... T Consensus 233 syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev~ddrk~msMl 312 (537) T protein:vir:10 233 SHLHKAIKAVNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKNKAEQYLREVMGRYRNKLVYDANTGEIKDDKKFMSML 312 (537) T ss_pred eeehhhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhccceEEEeccCceecccchhhhhh Confidence 6676666665555544443322211111112222222111111 11111222 Q ss_pred HHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccccc--ch--HHHHHHHHHHHH Q lcl|Aclame:pro 232 RSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ--SS--IQQISGMYASAL 307 (392) Q Consensus 232 ~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~--~~--~~~~~~~~~~~l 307 (392) +.|+-..+.| +.|.+++.|..... +.-++-..+..+.+..+++||..-|+..+..+ .+ ..--+--+..|+ T Consensus 313 EDyWLPRReG-----grgTEItTLpGgqn-lgem~DV~YF~kKLy~aLnVP~SRl~~e~~f~~Gr~~EItRDEiKF~KFI 386 (537) T protein:vir:10 313 EDFWLPRREG-----GRGTEISTLPGGQN-LGELEDVKYFQKKLYKALNVPSSRLETETTFNIGRAAEITRDEVKFQKFI 386 (537) T ss_pred hhhcccccCC-----CcccceeeccccCC-cChHHHHHHHHHHHHHHhCCCccccCCCCcccccccchhhHHHHHHHHHH Confidence 2222222222 24566666665422 22345566777899999999999997543321 11 122233345555 Q ss_pred HHHHHHHHHHHHHHhhhhh--------------ccchhhhhhcCh--HH------HHHHHHHHHh-----CCccCH---- Q lcl|Aclame:pro 308 NRYLRPAISELEYKLSDHI--------------SVNMRPAIDPLG--DN------YLSTISTATR-----WGALAE---- 356 (392) Q Consensus 308 ~p~l~~i~~~l~~~l~~~~--------------~~d~~~~~~~~~--~~------~~~~~~~~~~-----~g~~t~---- 356 (392) .-+-..+...|...|-+.+ .-+++..+..|. .+ +..+++.+-+ +..++. T Consensus 387 ~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~s~dyi~ 466 (537) T protein:vir:10 387 ARLRKRFSELFVDLLKTQLILKGICSIEEWEEMKEHIQFDFIADNYFTELKEIEIRNERMNEVAQMDPYVGKYFSANYIR 466 (537) T ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHH Confidence 5555555555544332211 111111111111 11 1112222211 112222 Q ss_pred --------HHHHHH---HH---hCCCCC--cccccccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 357 --------NQATFV---LQ---EAGYIP--KDLPAPENTNKKTTGQSNEPVP 392 (392) Q Consensus 357 --------nE~R~~---l~---~~g~~~--~e~~~~~~~~~~~~gd~~~p~p 392 (392) .|+-+. +. ..|.-+ .+.-.++ .++..++|.| T Consensus 467 k~ILr~tDeeI~~~~k~I~~E~k~~~~~~p~~~~~~~-----~~~~~~~~~~ 513 (537) T protein:vir:10 467 TKVLKQTESEIKEIDKEIKQEIADGVIMDPQAMQAME-----MGIGDEEPVP 513 (537) T ss_pred HHHhccCHHHHHHHHHHHHHHhhCCCCCCcccccccc-----cCCCCcccCC Confidence 222221 11 133322 2111111 1112222222 No 221 >protein:vir:102330 Length: 451 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529555;genbank:gi:90592641;genbank:GeneID:3974462 Probab=86.57 E-value=0.045 Score=27.99 Aligned_cols=363 Identities=9% Similarity=-0.020 Sum_probs=144.6 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhh--hhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecch Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQI--MESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKK 78 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~ 78 (392) ++-.|.+....+...- .....++....+-.. .............+..-+.+.-..-.|+..+.-+-+-|+...-.+ T Consensus 5 ~i~~~i~~~~~~~~r~--~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~yl~G~p~~~~~~~ 82 (451) T protein:vir:10 5 KIRAIISADAARRQEI--LQAKSYYYNKNDILKKGVVVQNRDENPLRNADNRISHNFHEILVDEKASYMFTYPVLFDIDN 82 (451) T ss_pred HHHHHHHHHHHHHHHH--HHHHHHhcccCccccccccccccccccccccccccccchHHHHHHhhhhheecccceeecCC Confidence 3334333221111000 000001100000000 000000000000111112233455567777776666676543211 Q ss_pred ---hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCC-------ceeEEEEeccccceeeecCCC-ceEEE-- Q lcl|Aclame:pro 79 ---NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANG-------ADMKWEYLRPSQVNTYYFEYE-NGMYY-- 145 (392) Q Consensus 79 ---~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G-------~~~~l~~l~~~~v~~~~~~~~-~~~~~-- 145 (392) ....+..=. .-........+..+...+|.||.++.++.+. ....+..++|..+-+..+... +.+.. T Consensus 83 ~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~a~~~~y~de~~~~~~~~~~~~~~~~i~p~~~~~vydd~~~~~~~~~i 161 (451) T protein:vir:10 83 NKELNEKVTDVL-GNEFTRKAKNLAIEASNCGSAWLHYWIDEEYSGEQVTNQTFKYGVVNTEEIIPIYRNGIERELEAVI 161 (451) T ss_pred cHHHHHHHHHHh-ccCHHHHHHHHHHHHhhcCeEEEEEeecCCcccccccccceeEEEEcccceEEEEcCCCCCceEEEE Confidence 111111100 1134555666778889999999998877642 123466778888777664421 11111 Q ss_pred -EEEecCCcce--------eeEEEecceEEEecCCC------------------------ccccccCCCHHHHHHHHHHH Q lcl|Aclame:pro 146 -NITFDDPKIE--------PILQAPQSDLIHMKLLS------------------------IDGGKTGISPLYSLRRESKI 192 (392) Q Consensus 146 -~~~~~~~~~~--------~~~~~~~~~vih~~~~~------------------------~~~~~~G~s~l~~~~~~i~~ 192 (392) ++.......+ ....+.++.+.+++... ..+...|.|-+......++. T Consensus 162 r~~~~~~~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~~d~e~v~~liDa 241 (451) T protein:vir:10 162 RYYIQLEDVKGQIQKQAYTYVEFWTDKILDKYKFFGVSCCGSQIEHITVQHRFNSVPFVEFSNNIKKQSDLSKYKKILDL 241 (451) T ss_pred EEEEeeecccccccceEEEEEEEEeCCeEEEEEecccCccccccccccccCCCCeeeEEEeccCCCCCCchhhHHHHHHH Confidence 1111000000 01112333333322100 00012366777777777777 Q ss_pred HHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeecc-------CCceEEeccCChhhHHHH Q lcl|Aclame:pro 193 QRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLD-------DLEEFTALEIKSNVAQLL 265 (392) Q Consensus 193 ~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~-------~g~~~~~l~~~~~d~~~~ 265 (392) .+.+..-..+.++--+.|-.+++--.. ...++...... ..+++.+. ++++|..-.. ....+. T Consensus 242 ~~~~~S~~~~~~~~~~~~~l~~~g~~~-~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~~l~~~~--~~~~~~ 310 (451) T protein:vir:10 242 YDRVMSGFANDLEDIQQIIYILENFGG-EDTSEFLKELK--------RYKTIKTETDSEGDSGGLKTMQIEI--PTEARK 310 (451) T ss_pred HHHHHHHHHHHHHHhccceeeeecCCc-ccchhhHHHHh--------hCCeEEecCcCCccCCcceEEeecC--CHHHHH Confidence 776665556665655556555442111 11111111111 11222222 3345543333 334456 Q ss_pred HHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhhhccchh Q lcl|Aclame:pro 266 SQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGM--------------YASALNRYLRPAISELEYKLSDHISVNMR 331 (392) Q Consensus 266 e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~--------------~~~~l~p~l~~i~~~l~~~l~~~~~~d~~ 331 (392) +..+...+.|...-++|..--. ..++.+..+.+.. +...+.-.++.+...+...=...+.+.+. T Consensus 311 ~~~~~l~~~I~~~s~~p~~~~~--~~gn~Sg~Alk~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~d~~~i~i~f~ 388 (451) T protein:vir:10 311 IILEILKKQIYESGQGLQQDTE--NFGNASGVALKFFYRKLELKSGLLETEFRTSFDKLIKAILYFLGVTDYKKIQQTYT 388 (451) T ss_pred HHHHHHHHHHHHHhCccccccc--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccceeEEec Confidence 6777788888888888853111 1112222233222 22222222222222111000011222222 Q ss_pred hhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCc--c-ccc------------ccCCCCCCC Q lcl|Aclame:pro 332 PAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPK--D-LPA------------PENTNKKTT 384 (392) Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~--e-~~~------------~~~~~~~~~ 384 (392) .-+..+..+.+..+.++ .|+++..-+.++ .|+..+ + ... .+++++... T Consensus 389 ~~~p~n~~e~~~~~~kl--~g~iS~et~~~~---~p~v~d~~~e~~~~~ee~~~~~~~~~~~~~~~~~ 451 (451) T protein:vir:10 389 RNMMSNDLEDADIATKS--VGIIPTKIILRH---HPWVDDVEEAEKLYLEEKKIQASKVSDDYNNFTE 451 (451) T ss_pred CCCCCCHHHHHHHHHHH--hccCchHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCC Confidence 22333455566666666 477887655544 344322 1 111 112333222 No 222 >protein:vir:94709 Length: 522 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338118;genbank:gi:77118196;genbank:GeneID:3707732 Probab=85.37 E-value=0.053 Score=27.57 Aligned_cols=341 Identities=12% Similarity=0.020 Sum_probs=133.4 Q ss_pred Ccchhhhhhcccccccccccccccc---cCcchhhhhhhccCCCC---cccch-------hhhhcchHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYF---PDGNDAQIMESLLGDNN---EWVSA-------RAALRNSDLFSIILQLSSDL 67 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~-------~~al~~~~v~~~i~~ia~~i 67 (392) ++..+.. =...........+.+.. .....+.+...+++... ..++. ........|..-...+.+.+ T Consensus 38 lP~~~~~-~~~~~~~~~~~~~dst~~~a~~~Las~l~~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~ 116 (522) T protein:vir:94 38 IPSLFPK-ESDNSSTEYTTPWQAVGARCLNNLAAKLMLALFPQSPWMRLTVSEYEAKTLSQDSEAAARVDEGLAMVERVL 116 (522) T ss_pred cccccCC-CCCcccccccccccccHHHHHHHHHHHHHhhcCCCCcccccccchhhhhccCcccchhHHHHHHHHHHHHHH Confidence 3322210 00000000000111100 00000111111110000 00000 00000111211111111111 Q ss_pred hhCceeeecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceE--EE Q lcl|Aclame:pro 68 AIVKINAEKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGM--YY 145 (392) Q Consensus 68 a~lp~~~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~--~~ 145 (392) ...+.+-| .+.=+..+..+|..+|++.+++..+..|.+..+..+|-..+-+..|..|... +. T Consensus 117 ------------~~~~~~sn----f~~~~~~~~~~L~~~G~a~l~~~~~~~~~~~~~~~~pl~~y~v~~d~~G~vd~i~r 180 (522) T protein:vir:94 117 ------------MAYMETNS----FRVPLFEALKQLIVSGNCLLYIPEPEQGTYSPMRMYRLVSYVVQRDAFGNILQIVT 180 (522) T ss_pred ------------HHHHHhcC----cHHHHHHHHHHHHhhCcEeEeeeccCCCceeeEEEEEcceEEEeeCCCcCeEEEee Confidence 11112222 2333445677778899999998877766655554444455555544443321 11 Q ss_pred EEEe--------------------------------cCCcc-------ee-------eEEEecceEEEecCCCccccccC Q lcl|Aclame:pro 146 NITF--------------------------------DDPKI-------EP-------ILQAPQSDLIHMKLLSIDGGKTG 179 (392) Q Consensus 146 ~~~~--------------------------------~~~~~-------~~-------~~~~~~~~vih~~~~~~~~~~~G 179 (392) ...+ ..... +. ...+....++..|....++-.|| T Consensus 181 ~~~~~~~~l~~~~~~~~~~~~~~p~~~v~v~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~e~P~~~~Rw~~~~ge~YG 260 (522) T protein:vir:94 181 IDKVAFSALPEDVKSQLNADDYEPDTELEVYTHIYRQDDEYLRYEEVEGIEVTGTDGSYPLTACPYIPVRMVRLDGEDYG 260 (522) T ss_pred eeeccHHhcchHHHHHHhcccCCccceEEEEEEEEeeCCceeEEeeccCceecccCCCCccccCCceeeeeeecCCCccc Confidence 1110 00000 00 01123334555666566777899 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeec--cCCceEEeccC Q lcl|Aclame:pro 180 ISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVL--DDLEEFTALEI 257 (392) Q Consensus 180 ~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl--~~g~~~~~l~~ 257 (392) .||+..+...+...+.+.+...........|..++.-++.....+ . ....+ +.++- ++++...++.. T Consensus 261 rgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~~v~~~g~~~~~~-~--------~~~~~--g~~v~g~~~~v~~~~~~~ 329 (522) T protein:vir:94 261 RSYCEEYLGDLNSLETITEAITKMAKVASKVVGLVNPNGITQPRR-L--------NKAAT--GEFVAGRVEDINFLQLTK 329 (522) T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecccccccchh-e--------eccCC--ceeecCCcccceeeeccc Confidence 999999999999999999988888888888876655333222111 1 00111 11222 23344445443 Q ss_pred ChhhHH-HHHHHHHHHHHHHHHhcccHHHcCCcccccchH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hcc-chhhh Q lcl|Aclame:pro 258 KSNVAQ-LLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSI-QQISGMYASALNRYLRPAISELEYKLSDH-ISV-NMRPA 333 (392) Q Consensus 258 ~~~d~~-~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~-~~~~~~~~~~l~p~l~~i~~~l~~~l~~~-~~~-d~~~~ 333 (392) .+ +.+ ..+..+..+.+|-.+|-+.....-....-|..+ .....-....|.|++..+.++|-.-|... +.. .-... T Consensus 330 ~~-~~~~~~~~i~~~~~rI~~af~~~~~~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~ 408 (522) T protein:vir:94 330 GQ-DFTIAKSVADAIEQRLGWAFLLNSAVQRNAERVTAEEIRYVAGELEATLGGVYSVQSQELQLPIVRVLMNQLQSAGM 408 (522) T ss_pred cc-chhHHHHHHHHHHHHHHHHHhhhhhccCCCccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC Confidence 32 333 356667777888888866532111111112222 22334455667777777777765433211 000 00000 Q ss_pred hhcChHHHHHHHHHHHhCCccCHH-------HHHHHHHhCCCCCcccccccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 334 IDPLGDNYLSTISTATRWGALAEN-------QATFVLQEAGYIPKDLPAPENTNKKTTGQSNEPVP 392 (392) Q Consensus 334 ~~~~~~~~~~~~~~~~~~g~~t~n-------E~R~~l~~~g~~~~e~~~~~~~~~~~~gd~~~p~p 392 (392) +..-+.+ +++..+.|+= ++-.++...+ .+. +-...++ T Consensus 409 lP~~p~~-------~v~v~~~s~La~~qr~~~~~~l~~~~~----------~ia-----~l~P~~~ 452 (522) T protein:vir:94 409 IPDLPKE-------AVEPTVSTGLEALGRGQDLEKLTQAVN----------MMT-----GLQPLSQ 452 (522) T ss_pred CCCCCcc-------cEEeeEecHHHHHHHHHHHHHHHHHHH----------HHH-----hccchhh Confidence 0000000 0111111110 0111110000 000 0011122 No 223 >protein:vir:105461 Length: 470 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529871;genbank:gi:90592611;genbank:GeneID:3974525 Probab=84.37 E-value=0.061 Score=27.24 Aligned_cols=363 Identities=14% Similarity=0.079 Sum_probs=148.0 Q ss_pred Ccchhhhhhcccccc--cccccccccccCcchhhhhhhcc----CCCCcc---cchhhhhcchHHHHHHHHHHHhhhhCc Q lcl|Aclame:pro 1 MILPILNFINQTNDP--PEAGSVQSYFPDGNDAQIMESLL----GDNNEW---VSARAALRNSDLFSIILQLSSDLAIVK 71 (392) Q Consensus 1 m~Mg~~n~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~al~~~~v~~~i~~ia~~ia~lp 71 (392) -+..+.+........ +.-.....++.. ...-...... ...+.. -.+..-+.+.-...-|+..+.-+-+-| T Consensus 5 ~~~~~i~~~~~~~~~~~~~~~~~~~Yy~g-~~~I~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~G~p 83 (470) T protein:vir:10 5 ALKKLIQNTSTSRNDLINNYKQAVNYYEN-KTDITTRNNGKAKLNKEGKKDPLRSADNRIPSNFYQLLVDQEAGYVASVF 83 (470) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhccccchhcccccccccccccCCcccccchHHHHHHhhhhheeccc Confidence 111111111100000 000000000000 0000000000 000000 000111222333444555555555556 Q ss_pred eeeecchhh---hhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCC-c-eEEE- Q lcl|Aclame:pro 72 INAEKKKNQ---GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYE-N-GMYY- 145 (392) Q Consensus 72 ~~~~~~~~~---~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~-~-~~~~- 145 (392) +++.-.+.. .+..-=+ .....-...+..++..+|.+|.++..+.+|++ .+..++|..+-+..+... + .... T Consensus 84 ~~~~~~d~~~~~~l~~~~~--~~~~~~~~~l~~~~~~~G~a~~~~y~d~~~~~-~~~~~~p~~~~~v~d~~~~~~~~a~i 160 (470) T protein:vir:10 84 PDIDVGKDADNKKIIDVLG--DDRALTLNGLLVDSSNAGRAWLHYWIDEDGNF-RYGIIQPDQITPIYATTLDNKLLGIL 160 (470) T ss_pred eeeecCchHHHHHHHHHHh--hhHHHHHHHHHHHHhhcCeeEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEEE Confidence 654322211 1111011 12233344567788899999999999998875 467788888888876532 1 1111 Q ss_pred -EEEecCCcce----eeEEEecceE---------------------------------------------EEecCCCccc Q lcl|Aclame:pro 146 -NITFDDPKIE----PILQAPQSDL---------------------------------------------IHMKLLSIDG 175 (392) Q Consensus 146 -~~~~~~~~~~----~~~~~~~~~v---------------------------------------------ih~~~~~~~~ 175 (392) ++...+.... ....+....+ +|++++ T Consensus 161 r~y~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn---- 236 (470) T protein:vir:10 161 RSYKQLDPDSGKYFTVHEYWTDKEAQFFRTNATDSTVIEPYNIITSYDLSAGYETGQSNTLKHNFGRVPFIEFSKN---- 236 (470) T ss_pred EEEEeeecCCceEEEEEEEEcCCcEEEEEeecCcceeccccccccccccccccccccccccccCCCeeeEEEeecC---- Confidence 1111110000 0111222222 333322 Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeec-------cC Q lcl|Aclame:pro 176 GKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVL-------DD 248 (392) Q Consensus 176 ~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl-------~~ 248 (392) ..|.|-+......++....+.....+.++.-+.|-.+++--...... +...... ..+.+.+ +. T Consensus 237 -~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lvl~g~~~~~~~-~~~~~~~--------~~~~i~~~~~~~~~~~ 306 (470) T protein:vir:10 237 -KYRLPELNKYKGLIDAYDDIYNGFINDLDDVQTVILVLTNYGGADLH-QFMNDLR--------KYKSIKINNTGNGDNS 306 (470) T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCcceeeecCCccccc-hhhhhhh--------hcCeEeccCCCCCcCc Confidence 24778888888888887777766677667666676666532221111 1111111 1112222 22 Q ss_pred CceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHHHH--------------HHHHHHHHHHHHH Q lcl|Aclame:pro 249 LEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISG--------------MYASALNRYLRPA 314 (392) Q Consensus 249 g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~--------------~~~~~l~p~l~~i 314 (392) +++|..-..+ ...+....+...+.|+..-++|..-... .++.+..+.+. .+...+.-.++.| T Consensus 307 ~~~~lt~~~~--~~~~~~~~~~L~~~I~~~s~~p~~~~~~--~gn~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i 382 (470) T protein:vir:10 307 GVDKLQIDIP--VEARDDALKITRKNIFLFGQGIDPANFE--SSNASGVAIKMLYSHLELKAAKTQTYFEHAINELVRAI 382 (470) T ss_pred eeEEEeecCC--hHHHHHHHHHHHHHHHHHhCCCCCCccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 3455443333 3344566677778888877777532221 12222222222 2233333333333 Q ss_pred HHHHHHHhh--hhhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCc---ccccc-----------cC Q lcl|Aclame:pro 315 ISELEYKLS--DHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPK---DLPAP-----------EN 378 (392) Q Consensus 315 ~~~l~~~l~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~---e~~~~-----------~~ 378 (392) .+.++..=. ..+.+.+..-+..+..+.+..+..+ +|+++.--+.+.+ |+..+ |+.++ .+ T Consensus 383 ~~~l~~~~~d~~~i~i~f~~~~p~d~~e~~~~~~~~--~g~iS~et~l~~~---p~v~D~~~E~eri~~E~~e~~~~~~~ 457 (470) T protein:vir:10 383 MRYLNFSDADKRHISQHWTRTKVEDSLTKAQIVSTV--ANYSSKEAVAKAN---PIVDDWQQELKDLAKDKEENDPYSNQ 457 (470) T ss_pred HHHhcccCcccceeeEEeccCCCCCHHHHHHHHHHH--hccCcHHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHhhcc Confidence 322221100 1122223333334556666666665 5788876555443 44322 11111 11 Q ss_pred CCCC-CCCCCCCC Q lcl|Aclame:pro 379 TNKK-TTGQSNEP 390 (392) Q Consensus 379 ~~~~-~~gd~~~p 390 (392) .+.. ++|...+- T Consensus 458 ~~~~~~~~~dde~ 470 (470) T protein:vir:10 458 ADELNGKGVNDEQ 470 (470) T ss_pred ccccCCCCCCCCC Confidence 1111 11222222 No 224 >protein:vir:78393 Length: 489 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1851 # MgeName: SETP3 # Cross-refs: genbank:acc:YP_001110831;genbank:gi:134288592;genbank:GeneID:5179656 Probab=81.54 E-value=0.085 Score=26.46 Aligned_cols=374 Identities=9% Similarity=-0.034 Sum_probs=155.6 Q ss_pred Ccchhh--hhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeec-c Q lcl|Aclame:pro 1 MILPIL--NFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEK-K 77 (392) Q Consensus 1 m~Mg~~--n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~-~ 77 (392) ++.+-+ +.+........+..+-.+-+......-.... - ..|.-.+.+...++.++..+-+-|..+.- . T Consensus 22 ~~~W~~ird~~~G~~~~~~r~~yl~~~~~~~~e~~Y~~r--------l-~rA~~~n~~~~tl~~l~G~vfrk~p~~~~p~ 92 (489) T protein:vir:78 22 APKWQKVRHALAGELVSYLRNVGLNEPDKAYGEARQAEY--------E-AGGIVYNFTRRTLSGMVGSVMRKEPEINIPK 92 (489) T ss_pred HHHHHHHHHHhcCcccccccCCCCCCCCCCCChHHHHHH--------H-hccccCChHHHHHHHHhchhhcCCcceeccH Confidence 111111 1111110000000000000000000000000 0 01112345666777777767666654421 1 Q ss_pred hhhhhcccCC-ccCCHHHHHHHHHHHHHHhCCeeEEEecccCC------------ceeEEEEeccccceeee-------- Q lcl|Aclame:pro 78 KNQGIIDNPS-TNANKHGFWQSMFAQLLLGGEAFAYRWRNANG------------ADMKWEYLRPSQVNTYY-------- 136 (392) Q Consensus 78 ~~~~~~~~PN-~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G------------~~~~l~~l~~~~v~~~~-------- 136 (392) ....++..-. ...+-.+|.+.++...+.+|-+++++..+..| +|. +..+.|..|-=+. T Consensus 93 ~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~T~ade~~~~~rPy-~~~~~~~~IinW~~~~v~G~~ 171 (489) T protein:vir:78 93 ELEYLLKNADGSGVGLIQHAQDTLMEIDSVGRGGLLVDAPETGAATAAEQNAGLLNPT-IAFYTTENIVNWRLTRVGSVN 171 (489) T ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeeCCCCCcCHHHHHHhcCCcE-EEEechhhhcCceeeeeCCcc Confidence 1222333222 34688899999999999999999998865544 122 3333333221110 Q ss_pred -----------------cCCCceEEEEEE--------------e--c-CCcce-eeEEE---------ecceEEEecCCC Q lcl|Aclame:pro 137 -----------------FEYENGMYYNIT--------------F--D-DPKIE-PILQA---------PQSDLIHMKLLS 172 (392) Q Consensus 137 -----------------~~~~~~~~~~~~--------------~--~-~~~~~-~~~~~---------~~~~vih~~~~~ 172 (392) +.++......+. + . ++... ....+ ..=.++.+- .. T Consensus 172 ~Lt~v~lrE~~~~~d~~~~f~~~~~~q~RvL~~~~~g~~~~~~~r~~~~g~~~~~~~~~~~~~g~~~l~~IPfv~~~-~~ 250 (489) T protein:vir:78 172 RVTMVVLRETWEYNEPGNEFETKYGEQYRVLDIDSDGNYRQRLFRFDAEGGAQEDVVEIYPDLGESLRGVIPFTFIG-AT 250 (489) T ss_pred ceeEEEEEEeEEeecCCCCccceeEEEEEEEecCCCcceEEEEEEeecCCcccceeeEEeccCCCCccCeeeEEEEe-cC Confidence 001110000000 0 0 00000 00000 000111111 12 Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceeeccCCceE Q lcl|Aclame:pro 173 IDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEF 252 (392) Q Consensus 173 ~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~ 252 (392) ..++..|.+|+..++..-...-....-....+-..+.|-.++.--..........-....-..|+ +..+.|+.+.++ T Consensus 251 ~~~~~~~~pPLl~LA~lni~Hy~~ssd~~~~l~~~~~P~l~i~G~d~~~~~~~~~~~~~~i~~g~---~~~~~lp~~~~~ 327 (489) T protein:vir:78 251 NNDATIDDAPLLPLAELNIGHYRNSADNEESSFVVGQPTLFIYPGENLTPQAFKEANPNGIKFGS---RRGHNLGYGGSA 327 (489) T ss_pred CCCCCCCcCchHHHHHHHHHHhhhhhHHHHHHHHcccceeeeecCccCCcccccccCccceeeCC---cccccCCCCCCc Confidence 33455678888877654333333333344455566677776653211111100000001112232 234666666544 Q ss_pred EeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHH-HHHHHHHHHHHHHHHHHHHHHHhh---hhh-- Q lcl|Aclame:pro 253 TALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQI-SGMYASALNRYLRPAISELEYKLS---DHI-- 326 (392) Q Consensus 253 ~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~-~~~~~~~l~p~l~~i~~~l~~~l~---~~~-- 326 (392) .-+..++..+. .+.++....+.+ ..| ..++.-....+...... ...-.+.|.-+...+++.+++.|- ..+ T Consensus 328 ~~ie~~~~~~~-r~~l~~le~qm~-~lG--a~l~~~~~~~Ta~~~~~~~~~~~S~L~~~a~~~e~al~~~l~~~a~w~G~ 403 (489) T protein:vir:78 328 QLIQAGENNLA-RQNMLDKEQQAI-QIG--AQLITPTQQITAQSARIQRGADTSVMATIARNVSQAYTDALRWVAVMLGK 403 (489) T ss_pred ceeccCcchHH-HHHHHHHHHHHH-HHh--hhhccCCcchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCC Confidence 44433333332 122221111111 122 22332111112111122 233456778888888888887762 111 Q ss_pred ------cc--chhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccc----ccccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 327 ------SV--NMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDL----PAPENTNKKTTGQSNEPVP 392 (392) Q Consensus 327 ------~~--d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~----~~~~~~~~~~~gd~~~p~p 392 (392) .+ +.++....-.......+-.++++|.++....++.|.+.|+..... -++++-++..+++-+.++| T Consensus 404 ~~~~~~~i~~n~dF~~~~~d~~~~~al~~~~~~G~is~~t~~~~L~~~gv~d~~~e~~~~ei~~~~~~~~~~~~g~~~ 481 (489) T protein:vir:78 404 PEDTEVEFRLNMDFFLEPMTAQDRAAWMADINAGLLPATAYYAALRKAGVTDWTDADIKDAVADQPLPVATEVQGEIP 481 (489) T ss_pred CCCCceEEEeecccCcccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccHHHHHHHHhhcCCCcccCCcccCC Confidence 11 222222222223456667778899999999999998888764221 1223344445555666777 No 225 >protein:vir:101806 Length: 516 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238883;genbank:gi:66391958;genbank:GeneID:3416633 Probab=76.03 E-value=0.14 Score=25.26 Aligned_cols=374 Identities=10% Similarity=0.122 Sum_probs=151.2 Q ss_pred chhhhhhcc----cc---cccccccccccccCcchhh---------------hhhhccCCCCcccc-------hhhhhcc Q lcl|Aclame:pro 3 LPILNFINQ----TN---DPPEAGSVQSYFPDGNDAQ---------------IMESLLGDNNEWVS-------ARAALRN 53 (392) Q Consensus 3 Mg~~n~~~~----~~---~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~-------~~~al~~ 53 (392) |.++.+|+- .. .........+..++..+.+ ++..+.+..+..-+ -+..+.+ T Consensus 1 ~~~~~lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~ 80 (516) T protein:vir:10 1 MKFLDLFKFWDRVDQNEYDERLKLGHESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGTKDLINTYRQLINN 80 (516) T ss_pred CCchHhcccccchhhhHHhhhhcCCcCcccCCCCCCCceeeecCCCcccccceeeeeeccccccchHHHHHHHHHHHhhc Confidence 444333322 11 0000111122222222211 11111121221111 1344568 Q ss_pred hHHHHHHHHHHHhhhhCc-----eeee--cch------------hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEe Q lcl|Aclame:pro 54 SDLFSIILQLSSDLAIVK-----INAE--KKK------------NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRW 114 (392) Q Consensus 54 ~~v~~~i~~ia~~ia~lp-----~~~~--~~~------------~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~ 114 (392) |.|..||+.|.+.+.-.. +.+. +.+ -+.++.--|-...+++ ++.+|...|..|..++ T Consensus 81 pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~ik~kI~eeF~~Il~ll~F~~~~~~----~fR~WYVDgRi~fhKi 156 (516) T protein:vir:10 81 PEVERAVANIVNEAIVYERGHKVVSLDLDDTDFGSNVKEKILEEFDEVCRLLDASRKLDT----LFRRWYVDSRIFFHKI 156 (516) T ss_pred cchhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhH----HHhhhhhcceEEEEEE Confidence 999999999998875432 2211 000 0111222333344444 4556667898888754 Q ss_pred c-ccCCceeEEEEeccccceeeecC-----CCce------EEEEEE-------ecCC--cceeeEEEecceEEEec--CC Q lcl|Aclame:pro 115 R-NANGADMKWEYLRPSQVNTYYFE-----YENG------MYYNIT-------FDDP--KIEPILQAPQSDLIHMK--LL 171 (392) Q Consensus 115 r-~~~G~~~~l~~l~~~~v~~~~~~-----~~~~------~~~~~~-------~~~~--~~~~~~~~~~~~vih~~--~~ 171 (392) - +.+.-..+|..|+|..+..+..- .+.. .++.|. +.+. ..+..+.++.+-|.|.. .. T Consensus 157 id~~k~GI~Elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI~~dAI~y~hSGL~ 236 (516) T protein:vir:10 157 MPNPKKGIAELRRLDPRFMEYYREIVTSDIGGTTIVKGYREFFIYTTGNEGYSYNGRIFEPNTRIKIPRSAVVYASSGLM 236 (516) T ss_pred ecCccccceeeeeeCCcceeeEeeecccccccchhhhhhhheeeeccCccccccccceeCCCcceeechhheeeecccce Confidence 3 33445889999999988875422 1111 122221 1110 11134556666655544 12 Q ss_pred CccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCc----------------------------- Q lcl|Aclame:pro 172 SIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLL----------------------------- 222 (392) Q Consensus 172 ~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~----------------------------- 222 (392) +.++... +|-|..+.+.+....-++....-+=-..+.-+=|.-++=+..+ T Consensus 237 d~~~~~i-~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev~ 315 (516) T protein:vir:10 237 DCSDRGI-IGYLHNAVKPANQLKLLEDAMVIYRITRAPERRVFYIDVGNMNNRKATEYVNGIMQSLKNRVVYDSNTGTVK 315 (516) T ss_pred eCCCCce-eeeehhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCeec Confidence 2222222 4556665555554444443322221111111112222211111 Q ss_pred hHHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc-----cchH- Q lcl|Aclame:pro 223 SDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-----QSSI- 296 (392) Q Consensus 223 ~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-----~~~~- 296 (392) .++..-...+.|+-..+.| +.|.+++.|..... +.-++-..+..+.+..+++||..-|+..+.. .+++ T Consensus 316 ddrk~msMlEDyWLpRReG-----grgTEItTLpGgqn-lgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EI 389 (516) T protein:vir:10 316 NQKRNLSMTEDYWLMRRDG-----KSVTEVSSLPGAQT-MGDMDDVRWFNKKLYEALRIPLSRIPRDDGGMVIGGQDTAI 389 (516) T ss_pred cchhhhhhHhhhcccccCC-----CCccceeeccccCC-cChHHHHHHHHHHHHHHhCCCcccccCCCCceeeccccchh Confidence 1111122223333332322 24566666665422 2234556677789999999999999754331 1111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------------ccchhhhhhcCh--HH------HHHHHHHHH----- Q lcl|Aclame:pro 297 QQISGMYASALNRYLRPAISELEYKLSDHI--------------SVNMRPAIDPLG--DN------YLSTISTAT----- 349 (392) Q Consensus 297 ~~~~~~~~~~l~p~l~~i~~~l~~~l~~~~--------------~~d~~~~~~~~~--~~------~~~~~~~~~----- 349 (392) ..-+--+..++.-+-..+...|...|-+.+ .-+++..+..|. .+ +..+++.+- T Consensus 390 tRDEiKF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpy 469 (516) T protein:vir:10 390 TRDELDFRKFVVQLQHDFEEIFLDPLKTNLIYKRIITEDEWDEQINNIKVNFHQDSYYTELKDIETLRLRVDALSQIEPY 469 (516) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhh Confidence 222333555565555555555544432211 111111111111 11 112222221 Q ss_pred hCCccCHHHHHHHHHhCCCCCccccccc---------CCCCCCCCCCCC Q lcl|Aclame:pro 350 RWGALAENQATFVLQEAGYIPKDLPAPE---------NTNKKTTGQSNE 389 (392) Q Consensus 350 ~~g~~t~nE~R~~l~~~g~~~~e~~~~~---------~~~~~~~gd~~~ 389 (392) -+..++.+=+|+... .+.-.|+...+ ++-+.|...++- T Consensus 470 vGky~s~~yi~k~IL--r~tDeei~~e~k~I~~E~~~~~~~~p~~~~~f 516 (516) T protein:vir:10 470 VGKYVSHDYVMKNIL--QMTEEQIAQEEKQIEQEAGIKRFQNPENEDDF 516 (516) T ss_pred hccccchHHHHHHHh--cCCHhhHHHHHHHHHHhhhCCCCCCCCccccC Confidence 245566655544321 11112221111 111111111111 No 226 >protein:vir:101189 Length: 516 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932511;genbank:gi:37651637;genbank:GeneID:2610682 Probab=76.03 E-value=0.14 Score=25.26 Aligned_cols=374 Identities=10% Similarity=0.122 Sum_probs=151.2 Q ss_pred chhhhhhcc----cc---cccccccccccccCcchhh---------------hhhhccCCCCcccc-------hhhhhcc Q lcl|Aclame:pro 3 LPILNFINQ----TN---DPPEAGSVQSYFPDGNDAQ---------------IMESLLGDNNEWVS-------ARAALRN 53 (392) Q Consensus 3 Mg~~n~~~~----~~---~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~-------~~~al~~ 53 (392) |.++.+|+- .. .........+..++..+.+ ++..+.+..+..-+ -+..+.+ T Consensus 1 ~~~~~lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~ 80 (516) T protein:vir:10 1 MKFLDLFKFWDRVDQNEYDERLKLGHESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGTKDLINTYRQLINN 80 (516) T ss_pred CCchHhcccccchhhhHHhhhhcCCcCcccCCCCCCCceeeecCCCcccccceeeeeeccccccchHHHHHHHHHHHhhc Confidence 444333322 11 0000111122222222211 11111121221111 1344568 Q ss_pred hHHHHHHHHHHHhhhhCc-----eeee--cch------------hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEe Q lcl|Aclame:pro 54 SDLFSIILQLSSDLAIVK-----INAE--KKK------------NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRW 114 (392) Q Consensus 54 ~~v~~~i~~ia~~ia~lp-----~~~~--~~~------------~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~ 114 (392) |.|..||+.|.+.+.-.. +.+. +.+ -+.++.--|-...+++ ++.+|...|..|..++ T Consensus 81 pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~ik~kI~eeF~~Il~ll~F~~~~~~----~fR~WYVDgRi~fhKi 156 (516) T protein:vir:10 81 PEVERAVANIVNEAIVYERGHKVVSLDLDDTDFGSNVKEKILEEFDEVCRLLDASRKLDT----LFRRWYVDSRIFFHKI 156 (516) T ss_pred cchhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhH----HHhhhhhcceEEEEEE Confidence 999999999998875432 2211 000 0111222333344444 4556667898888754 Q ss_pred c-ccCCceeEEEEeccccceeeecC-----CCce------EEEEEE-------ecCC--cceeeEEEecceEEEec--CC Q lcl|Aclame:pro 115 R-NANGADMKWEYLRPSQVNTYYFE-----YENG------MYYNIT-------FDDP--KIEPILQAPQSDLIHMK--LL 171 (392) Q Consensus 115 r-~~~G~~~~l~~l~~~~v~~~~~~-----~~~~------~~~~~~-------~~~~--~~~~~~~~~~~~vih~~--~~ 171 (392) - +.+.-..+|..|+|..+..+..- .+.. .++.|. +.+. ..+..+.++.+-|.|.. .. T Consensus 157 id~~k~GI~Elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI~~dAI~y~hSGL~ 236 (516) T protein:vir:10 157 MPNPKKGIAELRRLDPRFMEYYREIVTSDIGGTTIVKGYREFFIYTTGNEGYSYNGRIFEPNTRIKIPRSAVVYASSGLM 236 (516) T ss_pred ecCccccceeeeeeCCcceeeEeeecccccccchhhhhhhheeeeccCccccccccceeCCCcceeechhheeeecccce Confidence 3 33445889999999988875422 1111 122221 1110 11134556666655544 12 Q ss_pred CccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCc----------------------------- Q lcl|Aclame:pro 172 SIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLL----------------------------- 222 (392) Q Consensus 172 ~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~----------------------------- 222 (392) +.++... +|-|..+.+.+....-++....-+=-..+.-+=|.-++=+..+ T Consensus 237 d~~~~~i-~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev~ 315 (516) T protein:vir:10 237 DCSDRGI-IGYLHNAVKPANQLKLLEDAMVIYRITRAPERRVFYIDVGNMNNRKATEYVNGIMQSLKNRVVYDSNTGTVK 315 (516) T ss_pred eCCCCce-eeeehhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCeec Confidence 2222222 4556665555554444443322221111111112222211111 Q ss_pred hHHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc-----cchH- Q lcl|Aclame:pro 223 SDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ-----QSSI- 296 (392) Q Consensus 223 ~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~-----~~~~- 296 (392) .++..-...+.|+-..+.| +.|.+++.|..... +.-++-..+..+.+..+++||..-|+..+.. .+++ T Consensus 316 ddrk~msMlEDyWLpRReG-----grgTEItTLpGgqn-lgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EI 389 (516) T protein:vir:10 316 NQKRNLSMTEDYWLMRRDG-----KSVTEVSSLPGAQT-MGDMDDVRWFNKKLYEALRIPLSRIPRDDGGMVIGGQDTAI 389 (516) T ss_pred cchhhhhhHhhhcccccCC-----CCccceeeccccCC-cChHHHHHHHHHHHHHHhCCCcccccCCCCceeeccccchh Confidence 1111122223333332322 24566666665422 2234556677789999999999999754331 1111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------------ccchhhhhhcCh--HH------HHHHHHHHH----- Q lcl|Aclame:pro 297 QQISGMYASALNRYLRPAISELEYKLSDHI--------------SVNMRPAIDPLG--DN------YLSTISTAT----- 349 (392) Q Consensus 297 ~~~~~~~~~~l~p~l~~i~~~l~~~l~~~~--------------~~d~~~~~~~~~--~~------~~~~~~~~~----- 349 (392) ..-+--+..++.-+-..+...|...|-+.+ .-+++..+..|. .+ +..+++.+- T Consensus 390 tRDEiKF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpy 469 (516) T protein:vir:10 390 TRDELDFRKFVVQLQHDFEEIFLDPLKTNLIYKRIITEDEWDEQINNIKVNFHQDSYYTELKDIETLRLRVDALSQIEPY 469 (516) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhh Confidence 222333555565555555555544432211 111111111111 11 112222221 Q ss_pred hCCccCHHHHHHHHHhCCCCCccccccc---------CCCCCCCCCCCC Q lcl|Aclame:pro 350 RWGALAENQATFVLQEAGYIPKDLPAPE---------NTNKKTTGQSNE 389 (392) Q Consensus 350 ~~g~~t~nE~R~~l~~~g~~~~e~~~~~---------~~~~~~~gd~~~ 389 (392) -+..++.+=+|+... .+.-.|+...+ ++-+.|...++- T Consensus 470 vGky~s~~yi~k~IL--r~tDeei~~e~k~I~~E~~~~~~~~p~~~~~f 516 (516) T protein:vir:10 470 VGKYVSHDYVMKNIL--QMTEEQIAQEEKQIEQEAGIKRFQNPENEDDF 516 (516) T ss_pred hccccchHHHHHHHh--cCCHhhHHHHHHHHHHhhhCCCCCCCCccccC Confidence 245566655544321 11112221111 111111111111 No 227 >protein:vir:97265 Length: 513 # NCBI annotation: hypothetical protein ORF013 # Family: family:all:584 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294521;genbank:gi:149408242;genbank:GeneID:5237130 Probab=72.29 E-value=0.18 Score=24.61 Aligned_cols=365 Identities=14% Similarity=0.074 Sum_probs=153.5 Q ss_pred Ccch-hhhhhcccccccccccccccccCcchhhhhhhccCC---------------CCc---ccch--hhhhcchHHHHH Q lcl|Aclame:pro 1 MILP-ILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGD---------------NNE---WVSA--RAALRNSDLFSI 59 (392) Q Consensus 1 m~Mg-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~---~~~~--~~al~~~~v~~~ 59 (392) |+-. +-+.-++ . ..+......+.......++ ... .+.. ..|.-.+.+... T Consensus 1 m~~~~~~~v~~~--------h-~~y~a~~~~W~~ird~~~G~~~~r~~g~~YLPk~~~E~~~~Y~~rl~rA~~~n~~~~t 71 (513) T protein:vir:97 1 MADKDPKSPATT--------S-GAYDQMLPRWHVIETLLGGTEAMREAGETYLPRHQEETDKGYQERLASAVLLNMVEQT 71 (513) T ss_pred CCCCCCCCCCcC--------C-HHHHHHHHHHHHHHHHhcChHHHHhhcccCCCCCCCCCHHHHHHHHhcccCCChHHHH Confidence 2211 0000000 0 0000000111111111100 000 0000 112224566777 Q ss_pred HHHHHHhhhhCceeeecchhh----hhcccCC-ccCCHHHHHHHHHHHHHHhCCeeEEEecccCCc-------------- Q lcl|Aclame:pro 60 ILQLSSDLAIVKINAEKKKNQ----GIIDNPS-TNANKHGFWQSMFAQLLLGGEAFAYRWRNANGA-------------- 120 (392) Q Consensus 60 i~~ia~~ia~lp~~~~~~~~~----~~~~~PN-~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~-------------- 120 (392) ++.++..+-+-|..+...... .++..-. ...+-.+|.+.++...+.+|-+++++.....+. T Consensus 72 l~~l~G~vf~k~p~~~~~~p~~~~~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~~~~T~Ade~~ 151 (513) T protein:vir:97 72 LDTLSGKPFSEPIKLNEDVPKAIEETILPDVDLQGNNLDVFARQWFREGMAKALCHVLIDMPRPAPREDGQPRTLADDRR 151 (513) T ss_pred HHHHhhhhhhcCcccCcCchHHHHHHHhhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEecCCCCCccchhHHhHHHHHh Confidence 788887777777766532222 2233322 446889999999999999999999986543321 Q ss_pred ----eeEEEEecccccee----------------------eecCCCceEEEEEEe-cCCcce-------------eeE-- Q lcl|Aclame:pro 121 ----DMKWEYLRPSQVNT----------------------YYFEYENGMYYNITF-DDPKIE-------------PIL-- 158 (392) Q Consensus 121 ----~~~l~~l~~~~v~~----------------------~~~~~~~~~~~~~~~-~~~~~~-------------~~~-- 158 (392) |. +..+.|..|-= ..|.++......+.. ..+... +.+ T Consensus 152 ~~~rPy-~~~~~~e~IinW~~~~v~G~~~L~~v~l~E~~~~~Dgf~~~~~~q~rvL~~g~~~v~r~~~~~~~~~~e~~~~ 230 (513) T protein:vir:97 152 EGLRPY-WVMIKPECLLFARSEVINGVEVLQHVRIIEHYMEQDGFAEVCKRRIRVLEPGLVQLWEPVKKSNAQKEEWALA 230 (513) T ss_pred hccCce-EEEecHhhhcCcceeccCcceeeeeEEEEEEEeecCCCcceEEEEEEEEeCceEEEEEeecCCCccccceEEe Confidence 11 23333332211 112212211111110 000000 000 Q ss_pred -----EEecceEEEecCCCccccccCCCHHHHHHH-HHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHH Q lcl|Aclame:pro 159 -----QAPQSDLIHMKLLSIDGGKTGISPLYSLRR-ESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSR 232 (392) Q Consensus 159 -----~~~~~~vih~~~~~~~~~~~G~s~l~~~~~-~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~ 232 (392) .+..=.++.+- ....++..|.+|+..++. .+........ ....+...+.|-.++.--.... .+ . T Consensus 231 ~~g~~~l~~IP~v~~~-~~~~~~~~~~pPLl~LA~ln~~hy~~~Sd-~~~il~~~~~P~l~~~G~~~~~-~~-------~ 300 (513) T protein:vir:97 231 DEWATGLNYVPLVTFY-ADRQGFMMGKPPLLDLAHLNVAHWQSASD-QRHILTVSRFPILACSGASGED-SD-------P 300 (513) T ss_pred cCCCCcCCceeEEEEe-cCCCCCCCCccchHHHHHHHHHHHhhhhh-HHHHHHhcccceeeeecCCcCC-CC-------c Confidence 01111111121 123355678888887765 3444433333 3444556667777765221110 00 0 Q ss_pred HHhccccCCceeeccC-C--ceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcc-cccchHHHH-HHHHHHHH Q lcl|Aclame:pro 233 SFMKRSRSGGPVVLDD-L--EEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQG-DQQSSIQQI-SGMYASAL 307 (392) Q Consensus 233 ~~~~~~~~g~~~vl~~-g--~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~-~~~~~~~~~-~~~~~~~l 307 (392) -..|+ ..++.+++ | ++|.+.+.+.-... .+..+....++ +..|. .++.... ..+...... ..-..+.| T Consensus 301 i~iG~---~~~~~lpe~~~~~~yie~~g~~i~~~-~~~l~~le~qm-~~~Ga--~ll~~~~~~~Ta~a~~~~~~~~~S~L 373 (513) T protein:vir:97 301 VVVGP---NKVLYNPDPAGRFYYVEHTGQAIAAG-RTDLKDLEEQM-AGYGA--EFLKRKTGGQTATARALDSAEATSDL 373 (513) T ss_pred eEeec---cccccCCCCCCcceeeccCchhHHHH-HHHHHHHHHHH-HHHHH--HhhccCCccccHHHHHHHHHHHHHHH Confidence 11232 34566764 4 45556665543332 23333333333 33332 3343221 112111122 22334667 Q ss_pred HHHHHHHHHHHHHHhh---hh-------hccchhhhhh--cChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcccc- Q lcl|Aclame:pro 308 NRYLRPAISELEYKLS---DH-------ISVNMRPAID--PLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLP- 374 (392) Q Consensus 308 ~p~l~~i~~~l~~~l~---~~-------~~~d~~~~~~--~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~- 374 (392) .-+...+++.+++.|- .. ..+.+...|. .........+-.++..|.++....++.|.+.|+.+.++- T Consensus 374 ~~~a~~le~al~~~l~~~a~wlg~~~~~~~v~in~dF~~~~~~~~~~~al~~a~~~G~is~~t~~~~L~r~gvl~~d~d~ 453 (513) T protein:vir:97 374 SAMTGLFEDALAQALDITADWLRLGPNGGTVELVKDYDLEEMDAPGLQALQVAREKRDISRKTYLNGLRLRGVLPEDFDE 453 (513) T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCccEEEeccccCcccCCHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCCccCCH Confidence 7777888888877662 11 2222222222 222334566778889999999999998888787542211 Q ss_pred c------ccC-----------CC-----CCCCCCCCCCCC Q lcl|Aclame:pro 375 A------PEN-----------TN-----KKTTGQSNEPVP 392 (392) Q Consensus 375 ~------~~~-----------~~-----~~~~gd~~~p~p 392 (392) . .+. ++ |-.+++.+.--| T Consensus 454 ~~~~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 493 (513) T protein:vir:97 454 DEDWEELMEEISEAMGRAGLDLDPAQKNPPEGGEGEGEGE 493 (513) T ss_pred HHHHHHHHHhhhhccCCCCccccccCCCCCCCCCCCCCCC Confidence 0 000 00 001111111111 No 228 >protein:vir:102239 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655205;genbank:gi:109522785;genbank:GeneID:4157478 Probab=63.65 E-value=0.31 Score=23.35 Aligned_cols=362 Identities=11% Similarity=0.011 Sum_probs=166.8 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecch---- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKK---- 78 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~---- 78 (392) |+- .+ ..+.+.- +++..-.+..+ .|++..--+.-+..---++-.+.-+++...+...+ T Consensus 1 ~~~----~~-------~~~~~~~------~~~~g~~~~p~-~v~~~d~~Rl~aY~l~~~~y~n~~~~~~~~lrg~~~~~~ 62 (527) T protein:vir:10 1 MGQ----DK-------RQYGSTQ------QLRAGEANFPN-AVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQ 62 (527) T ss_pred CCc----cc-------cccCCCc------CcCCccccCcc-cCCHHHHHHHHHHHHHHHHhcCchhheeeecCCcccccc Confidence 442 11 0111110 01000000001 13322222222111122222232222222211111 Q ss_pred -------hhhhcccCC--------------------------ccCCHHHHHHHHHHHHHHhCCeeEEEeccc---CCcee Q lcl|Aclame:pro 79 -------NQGIIDNPS--------------------------TNANKHGFWQSMFAQLLLGGEAFAYRWRNA---NGADM 122 (392) Q Consensus 79 -------~~~~~~~PN--------------------------~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~---~G~~~ 122 (392) ...++.+++ .........++...+.++.|.+...+..|. .|.-+ T Consensus 63 r~~~~ps~~~~~~~~~~~~~~g~~~~~~~~~e~v~~~lr~~~~~e~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~~R~ 142 (527) T protein:vir:10 63 RPIYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRL 142 (527) T ss_pred ceeeehhhHHhhCCcceeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccCCCcCCCc Confidence 000111100 001223344455556677788887777663 23334 Q ss_pred EEEEeccccceeeecCCCceEEEEEE---------------------------------------------e-----cC- Q lcl|Aclame:pro 123 KWEYLRPSQVNTYYFEYENGMYYNIT---------------------------------------------F-----DD- 151 (392) Q Consensus 123 ~l~~l~~~~v~~~~~~~~~~~~~~~~---------------------------------------------~-----~~- 151 (392) .+..++|..+.+..+.++......+. + ++ T Consensus 143 ~v~~~DP~~~f~~ed~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~yt~~~w~lg~w~d~ 222 (527) T protein:vir:10 143 SLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDR 222 (527) T ss_pred eEeecCcceeeeeecCCCCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcceeeeeceeeccccccc Confidence 56666655555544433211110000 0 00 Q ss_pred ------------Ccce-----eeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEE Q lcl|Aclame:pro 152 ------------PKIE-----PILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVL 214 (392) Q Consensus 152 ------------~~~~-----~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~ 214 (392) ...+ ....+.-=.|+|++..+..+...|.|-|.-+...+...+....-.....+=+|.|-.++ T Consensus 223 ~e~p~~~~~~~~~~~~~~l~~lp~pi~fiPvV~~~t~p~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~~sG~Pi~~~ 302 (527) T protein:vir:10 223 PESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYAT 302 (527) T ss_pred cccccchhhhhhhcCceeeecccCCCCccceEeecCCCccccccChhhHhHHHHHHHHHhhhhhHHHHHHHHhCCceeee Confidence 0000 00112223457888776667778999998777777766666555555555566665554 Q ss_pred eeCCCCCchHHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccc Q lcl|Aclame:pro 215 TVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQS 294 (392) Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~ 294 (392) +.-. ..+..- +... -.-..|.++-|+++.++..++..+.-..+....+...+.|+.+=++|..-+|..+.... T Consensus 303 tg~~---~vd~~G-~~~~---~~VgPG~iweL~e~ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~~PavA~G~vD~s~~ 375 (527) T protein:vir:10 303 DSAP---PRDSRG-NMVP---WTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVA 375 (527) T ss_pred cccc---cccccC-CcCc---cccCCceeEecCCCcceeeccchhhhHHHHHHHHHHHHHHHHhhcCCeeeeccccCCcC Confidence 3211 111100 0000 01123456778999999999987655556777888889999999999999995433221 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-H--------------HHHhhh-------hh------ccchhhhhhcChHHHHHHHH Q lcl|Aclame:pro 295 SIQQISGMYASALNRYLRPAISE-L--------------EYKLSD-------HI------SVNMRPAIDPLGDNYLSTIS 346 (392) Q Consensus 295 ~~~~~~~~~~~~l~p~l~~i~~~-l--------------~~~l~~-------~~------~~d~~~~~~~~~~~~~~~~~ 346 (392) -.... .+-.+.|++....+. + ...|.- .+ ...+...+-.|.+...+.+. T Consensus 376 ~SG~A---LeL~L~PLlar~~rk~L~~~~Vqrq~~~~~~~~~L~aye~v~~~d~~~~~~v~ivf~p~lP~D~~avie~v~ 452 (527) T protein:vir:10 376 ESGIA---LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLL 452 (527) T ss_pred cHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcccCCCccccceEEEecccCCCCHHHHHHHHH Confidence 11111 112233433322111 1 111111 11 12222333446677788899 Q ss_pred HHHhCCccCHHHHHHHHHhCCCC--Cc-cccc-----------------------ccC--CCCCCCCCCCCCCC Q lcl|Aclame:pro 347 TATRWGALAENQATFVLQEAGYI--PK-DLPA-----------------------PEN--TNKKTTGQSNEPVP 392 (392) Q Consensus 347 ~~~~~g~~t~nE~R~~l~~~g~~--~~-e~~~-----------------------~~~--~~~~~~gd~~~p~p 392 (392) +++++|++++-=|=++|...|+. |. |..+ +++ .+-...-|+.+|+| T Consensus 453 tL~~aGiiS~etAv~~L~~~~g~eD~E~E~~~I~~era~~a~a~a~a~~~~~a~~~~~~g~~~~~~d~~~~~~~ 526 (527) T protein:vir:10 453 ELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNGQP 526 (527) T ss_pred HHHHcCchhHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhHHhhhhcCchhhhhccccCCCCCCcccccCCCC Confidence 99999999998887778777652 21 1111 111 11222346667888 No 229 >protein:vir:104892 Length: 558 # NCBI annotation: T4-like capsid assembly protein # Family: family:all:1036 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214363;genbank:gi:61806003;genbank:GeneID:3294412 Probab=63.55 E-value=0.32 Score=23.33 Aligned_cols=377 Identities=14% Similarity=0.139 Sum_probs=144.6 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhh--------hhccCCCCcccc-------hhhhhcchHHHHHHHHHHH Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIM--------ESLLGDNNEWVS-------ARAALRNSDLFSIILQLSS 65 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-------~~~al~~~~v~~~i~~ia~ 65 (392) =||||+ +...... . ....+..++..+.+.- ..+.+..+..-+ -+..+.+|.|..||+.|.+ T Consensus 3 ~lfgf~--~~~~~~~-~-~~~~s~~~p~~ddg~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVn 78 (558) T protein:vir:10 3 KLFGFS--IEETQKK-S-TSIISPVPKNNEDGVDNFISSGFYGQYVDIEGAYRSEYDLIRRYREMALHPEADGAIEDVVN 78 (558) T ss_pred chhcch--hhhhhhh-c-cCCccccCCCccccccceeccceeeeeecccchhhhHHHHHHHHHHHhhccchhhHHHHhhc Confidence 356653 3221111 1 1111222222222221 111111111111 1344568999999999998 Q ss_pred hhhhC-----ceeee--cch------------hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecc---cCCceeE Q lcl|Aclame:pro 66 DLAIV-----KINAE--KKK------------NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRN---ANGADMK 123 (392) Q Consensus 66 ~ia~l-----p~~~~--~~~------------~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~---~~G~~~~ 123 (392) .+.-. |+.+. ..+ -+.++.--|-...+++ ++.+|...|..|..++-+ .+.-..+ T Consensus 79 eaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll~F~~~~~e----~fR~WYVDgRiyfHKiid~k~pk~GI~E 154 (558) T protein:vir:10 79 EAIVSDLYDSPVEVELSNLNASNTLKKKIREEFRYIKEMMDFDKKSHE----IFRNWYVDGRVFYLKVIDTKNPQEGIQD 154 (558) T ss_pred ceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhH----HHhhheeeeEEEEEEEEeCCCcccccee Confidence 87543 22111 000 0111222333344444 455667889999888643 2334889 Q ss_pred EEEeccccceeeecCC---------------Cc-------eEEEEEEecCC---------cceeeEEEecceEEEecCCC Q lcl|Aclame:pro 124 WEYLRPSQVNTYYFEY---------------EN-------GMYYNITFDDP---------KIEPILQAPQSDLIHMKLLS 172 (392) Q Consensus 124 l~~l~~~~v~~~~~~~---------------~~-------~~~~~~~~~~~---------~~~~~~~~~~~~vih~~~~~ 172 (392) |..|+|..+..+..-. .+ ..|+.|..... ..+..+.++.+-| ++-+.. T Consensus 155 Lr~lDPr~i~~Vr~i~~~~~~~~~~~~~~~~~~~~~~~~~~eyy~Y~~~~~~~~~~~~~~~~~~~vkI~~dAI-~y~hSG 233 (558) T protein:vir:10 155 LRYIDPLKIKFIRQEKRKPGNQDPAIRVRSEQDVVPNPEFEEFYIYTPKVQHPTGMVGQMGGKNSIKIAKDSI-TMCTSG 233 (558) T ss_pred eeeeCcccceeeeeeccccccccceeeeecccceeeccceeEeeeecCCcccccccceeecCCCceeechhhe-eeeccc Confidence 9999999986643320 01 11121111100 0112234444433 333322 Q ss_pred ccccc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCch--------------------------- Q lcl|Aclame:pro 173 IDGGK--TGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLS--------------------------- 223 (392) Q Consensus 173 ~~~~~--~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~--------------------------- 223 (392) ..+.. .=+|-|..+.+.+....-++....-+=-..+.-+=|.-++=+.... T Consensus 234 L~d~~~~~i~syLhkAIKp~NQLkmlEDAlVIYRitRAPERRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev 313 (558) T protein:vir:10 234 LVDRNKNRVLSYLHKAIKALNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKVKAEQYLKEVMSRYRNKLVYDANTGEV 313 (558) T ss_pred ceecCCCeeeecchHhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhccceEEEeccCcee Confidence 21111 1134455555544444433332222111111111122222111111 Q ss_pred --HHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccccc--chH--H Q lcl|Aclame:pro 224 --DKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ--SSI--Q 297 (392) Q Consensus 224 --~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~--~~~--~ 297 (392) ++..-...+.|+-..+.| +.|.+++.|..... +-=++-..+..+.+..+++||..-|+..+..+ .+. . T Consensus 314 ~ddrk~msMlEDyWLpRReG-----grgTEItTLpGgqn-Lgem~DV~YF~kKLy~aLnVP~SRl~~e~~f~~Gr~~EIt 387 (558) T protein:vir:10 314 RDDRKFMSMMEDFWLPRREG-----GRGTEITTLPGGQN-LGELSDVDYFQKKLYRALGVPESRIAAEGGFNLGRSSEIL 387 (558) T ss_pred cccchhhhhHhhhcccccCC-----CCccceeeccccCC-cchHHHHHHHHHHHHHHhCCCccccCCCCcccccccchhh Confidence 111112222222222222 24566666665432 22245556777899999999999997543221 111 1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------------ccchhhhhhcCh--HH------HHHHHHHHHh----- Q lcl|Aclame:pro 298 QISGMYASALNRYLRPAISELEYKLSDHI--------------SVNMRPAIDPLG--DN------YLSTISTATR----- 350 (392) Q Consensus 298 ~~~~~~~~~l~p~l~~i~~~l~~~l~~~~--------------~~d~~~~~~~~~--~~------~~~~~~~~~~----- 350 (392) --+--+..|+.-+-..+...|...|-+.+ .-+++..+..|. .+ +..++..+-+ T Consensus 388 RDEiKF~KFI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyv 467 (558) T protein:vir:10 388 RDELKFAKFVGRLRKRFAAMFNDMLKTQLVLKNIVTPEDWKTMEDHIQYDFLYDNQFAELKESELMEGRLGMLATIEPYI 467 (558) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhh Confidence 22333455555555555555444332211 111111111111 11 1112222111 Q ss_pred CCccCHH------------HHHHH---HH---hCCCC--CcccccccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 351 WGALAEN------------QATFV---LQ---EAGYI--PKDLPAPENTNKKTTGQSNEPVP 392 (392) Q Consensus 351 ~g~~t~n------------E~R~~---l~---~~g~~--~~e~~~~~~~~~~~~gd~~~p~p 392 (392) +..++.+ |+-+. +. ..|.- |++.--+.+.+-.++||+..|.+ T Consensus 468 Gky~S~dyi~k~ILr~tDeeI~~~~kqI~~E~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 529 (558) T protein:vir:10 468 GKYYSTEYVRKRVLRQTDMEIEEIDTQIEDEIQKGIIPDPSQIDPITGEPLPQEGDPAMEGM 529 (558) T ss_pred ccccchHHHHHHHhccCHHHHHHHHHHHHHHHhCCCCCCccccChhhccccCccCCchhccC Confidence 1222322 22221 11 24432 33221121111112222222111 No 230 >protein:vir:96783 Length: 488 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1629 # MgeName: phiHSIC # Cross-refs: genbank:acc:YP_224240;genbank:gi:62362375;genbank:GeneID:3345722 Probab=63.49 E-value=0.32 Score=23.32 Aligned_cols=370 Identities=10% Similarity=0.002 Sum_probs=152.0 Q ss_pred Cc-------------------chhhhhhcccccccccccccccccC-----cchhhhhhhccCCCC--cccchhhhhcch Q lcl|Aclame:pro 1 MI-------------------LPILNFINQTNDPPEAGSVQSYFPD-----GNDAQIMESLLGDNN--EWVSARAALRNS 54 (392) Q Consensus 1 m~-------------------Mg~~n~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~al~~~ 54 (392) |+ ++.-.-++.+. ..+-++... -.+...-......+- .....+.|.-.+ T Consensus 14 m~V~~~hp~y~a~~~~W~~~~d~g~~~~k~~g-----~~YLPk~~~~~~~~~~d~~y~~~~~~~~~~y~~~~~~rA~~~n 88 (488) T protein:vir:96 14 MLTPIYHPDYLVNAPQWLRNLDCVMDNIKRKK-----QTYLPNLGAIPPEAKTDPKVTALAAKIEKDWEDLTWRLANYVN 88 (488) T ss_pred ecccccCHHHHHHhhhhhHhhhhhhHHHHHhh-----hhcCCCCCCccccccCcchhhhhhccchhhhHhhhhhccccCc Confidence 22 11111111000 000000000 000000000000000 000001233346 Q ss_pred HHHHHHHHHHHhhhhCceeeecch---hhhhcccCC-ccCCHHHHHHHHHHHHHHhCCeeEEEecccCCc---------- Q lcl|Aclame:pro 55 DLFSIILQLSSDLAIVKINAEKKK---NQGIIDNPS-TNANKHGFWQSMFAQLLLGGEAFAYRWRNANGA---------- 120 (392) Q Consensus 55 ~v~~~i~~ia~~ia~lp~~~~~~~---~~~~~~~PN-~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~---------- 120 (392) +...+++.++..+-+-|+.+.... ...++..-. ...+-.+|.+.++...+.+|-+++++.....+. T Consensus 89 ~~~~tl~~l~G~vfrk~p~~~~~~~~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~T~ade~~~~~ 168 (488) T protein:vir:96 89 IVNPTMNAITGAVMRREPEFDTMDNPVLIGLRDNIDGKGNGIDQECKQALNALQWGSRCGWLVRSHPESATMADWNKGKK 168 (488) T ss_pred hhHHHHHHhcchhhccCceeccCCcHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEecCCCcCCHHHHHHhcC Confidence 677788888887877777664332 223333322 346888999999999999999999987654321 Q ss_pred -eeEEEEeccccce----------------------eeecCCC--ce-EEEEEEecCC-----------cceeeE----- Q lcl|Aclame:pro 121 -DMKWEYLRPSQVN----------------------TYYFEYE--NG-MYYNITFDDP-----------KIEPIL----- 158 (392) Q Consensus 121 -~~~l~~l~~~~v~----------------------~~~~~~~--~~-~~~~~~~~~~-----------~~~~~~----- 158 (392) |. +..+.|..|- ...|..+ .. .+..+...++ ...+.+ T Consensus 169 rPy-~~~~~a~~IinW~~~~v~G~~~L~~v~lrE~~~~~D~~~~~~~~~~~~~~l~~g~~~v~~~~~~~~~~e~~~~~~g 247 (488) T protein:vir:96 169 LPT-AAFYDALHIIDWEVEYIDGEEKLTYLSLLEDYQERDGGTYVSKQRLINHRLVDGLCEFQEVTDDEYSDEWTPVLIN 247 (488) T ss_pred CcE-EEEechhhhcCcceeccCCceeeEEEEEEEEEEeccCCCcccceEEEEEEEECcEEEEEEEecCCcccceEeecCC Confidence 11 2222221110 0111111 01 1111111110 000000 Q ss_pred --EEecceEEEecCCCccccccCCCHHHHHHH-HHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHh Q lcl|Aclame:pro 159 --QAPQSDLIHMKLLSIDGGKTGISPLYSLRR-ESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFM 235 (392) Q Consensus 159 --~~~~~~vih~~~~~~~~~~~G~s~l~~~~~-~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 235 (392) .+..=.++++-. ...++..|.+|+..++. .+.-......+.. .+-..+.|..++...+.......... .. T Consensus 248 ~~~l~~IP~v~~~~-~~~~~~~~~pPLldLA~lnl~Hy~~ssd~~~-il~~~~~p~lv~~~~~~~~~~~~~~~-----~~ 320 (488) T protein:vir:96 248 SKQSDTIPFFLASS-QSNEWCIDSTPLTSLAEISLSIYVMNAYSNK-AMILANEAKWMVDMGDMNKTMASEMN-----PL 320 (488) T ss_pred CcccCeeEEEEEec-CCCCCCCCCCchHHHHHHHHHHHhhhhHHHH-HHHhcCCceeeeccCCCCcccccccc-----cc Confidence 011112233321 23455678888877655 4555555555533 34466667666654331111111110 01 Q ss_pred ccccCCc-eeeccCC-ceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHH-HHHHHHHHHHHHH Q lcl|Aclame:pro 236 KRSRSGG-PVVLDDL-EEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQI-SGMYASALNRYLR 312 (392) Q Consensus 236 ~~~~~g~-~~vl~~g-~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~-~~~~~~~l~p~l~ 312 (392) +..-.++ +...+.| ++|.+.+.+.--.+-++.++....++.+ .++......+...... ...-.+.|.-+.. T Consensus 321 g~~~~~~~~~~~~~g~~~~~e~~~~~l~~~~l~~l~~qm~~~Ga------~l~~~~~~~Ta~~~~~~~~~~~S~L~~~a~ 394 (488) T protein:vir:96 321 GFTLAGRMPYYVKNGDVKVIQAQFSPETENKVEKLFEQAVKVGA------SLFTQQSNETATGAAIRSGSSTASMATLGN 394 (488) T ss_pred eeeecccccccccCCceeecCCchhHHHHHHHHHHHHHHHHHhH------hhccCCCcchHHHHHHHHHHhhHHHHHHHH Confidence 2211111 2333444 4666655432211222222222222222 2332111112111122 2234567788888 Q ss_pred HHHHHHHHHhh---hh------------hccchhhhhh--cChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccccc Q lcl|Aclame:pro 313 PAISELEYKLS---DH------------ISVNMRPAID--PLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPA 375 (392) Q Consensus 313 ~i~~~l~~~l~---~~------------~~~d~~~~~~--~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~ 375 (392) .+++.+++.|- .. ..+++...+. .........+-.++.+|.++....++.|.+.|+...+... T Consensus 395 ~le~al~~~l~~~A~w~g~~~~~~~~~~~~~~in~dF~~~~ld~~~~~al~~~~~~G~Is~~t~~~~L~~~gvl~~d~~~ 474 (488) T protein:vir:96 395 NVEDTVRNMLRFIMRYFEGTNLYVNPDELVFKLNRDYFDVEVNPQMLQVAYAAMMEGNLPQVSWFELLKRARVVRGDMSK 474 (488) T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcCccceEEEeccCCCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCcCCccCCH Confidence 88888887662 11 2232222221 1112345677788899999999999999888887433221 Q ss_pred ccCCCCCCCCCCCC Q lcl|Aclame:pro 376 PENTNKKTTGQSNE 389 (392) Q Consensus 376 ~~~~~~~~~gd~~~ 389 (392) -+....+..++-+= T Consensus 475 e~~~~~ie~~g~~~ 488 (488) T protein:vir:96 475 EEFDEHIAELGFGM 488 (488) T ss_pred HHHHHHHhhcCCCC Confidence 11111111100000 No 231 >protein:vir:101494 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655388;genbank:gi:109522576;genbank:GeneID:4157566 Probab=63.42 E-value=0.32 Score=23.32 Aligned_cols=362 Identities=11% Similarity=0.009 Sum_probs=166.7 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeecch---- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKK---- 78 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~---- 78 (392) |+- .+ ..+.+.- +++..-.+..+ .|++..--+.-+..---++-.+.-+++...+...+ T Consensus 1 ~~~----~~-------~~~~~~~------~~~~g~~~~p~-~v~~~d~~Rl~aY~l~~~~y~n~~~~~~~~lrg~~~~~~ 62 (527) T protein:vir:10 1 MGQ----DK-------RQYGSTQ------QLRAGEANFPN-AVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQ 62 (527) T ss_pred CCc----cc-------cccCCCc------CcCCccccCcc-cCCHHHHHHHHHHHHHHHHhcCchhheeeecCCcccccc Confidence 442 11 0111110 01000000001 13322222222111122222232222222211111 Q ss_pred -------hhhhcccCC--------------------------ccCCHHHHHHHHHHHHHHhCCeeEEEeccc---CCcee Q lcl|Aclame:pro 79 -------NQGIIDNPS--------------------------TNANKHGFWQSMFAQLLLGGEAFAYRWRNA---NGADM 122 (392) Q Consensus 79 -------~~~~~~~PN--------------------------~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~---~G~~~ 122 (392) ...++.+++ .........++...+.++.|.+...+..|. .|.-+ T Consensus 63 r~~~~ps~~~~~~~~~~~~~~g~~~~~~~~~e~v~~~lr~~~~~e~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~~R~ 142 (527) T protein:vir:10 63 RPIYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIKVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRL 142 (527) T ss_pred ceeeehhhHHhhCCcceeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccCCCcCCCc Confidence 000111100 001223344455556677788887777663 23334 Q ss_pred EEEEeccccceeeecCCCceEEEEEE---------------------------------------------e-----cC- Q lcl|Aclame:pro 123 KWEYLRPSQVNTYYFEYENGMYYNIT---------------------------------------------F-----DD- 151 (392) Q Consensus 123 ~l~~l~~~~v~~~~~~~~~~~~~~~~---------------------------------------------~-----~~- 151 (392) .+..++|..+.+..+.++......+. + ++ T Consensus 143 ~v~~~DP~~~f~~ed~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~yt~~~w~lg~w~d~ 222 (527) T protein:vir:10 143 SLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDR 222 (527) T ss_pred eEeecCcceeeeeecCCCCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcceeeeeceeeccccccc Confidence 56666655555544433211110000 0 00 Q ss_pred ------------Ccce-----eeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEE Q lcl|Aclame:pro 152 ------------PKIE-----PILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVL 214 (392) Q Consensus 152 ------------~~~~-----~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~ 214 (392) ...+ ....+.-=.|+|++..+..+...|.|-|.-+...+...+....-.....+=+|.|-.++ T Consensus 223 ~e~p~~~~~~~~~~~~~~l~~lp~pi~fiPvV~~~t~p~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~~sG~Pi~~~ 302 (527) T protein:vir:10 223 PESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYAT 302 (527) T ss_pred cccccchhhhhhhcCceeeecccCCCCccceEeecCCCccccccChhhHhHHHHHHHHHhhhhhHHHHHHHHhCCceeee Confidence 0000 00112223457888776667778999998777777766666555555555566665554 Q ss_pred eeCCCCCchHHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccc Q lcl|Aclame:pro 215 TVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQS 294 (392) Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~ 294 (392) +.-. ..+..- +... -.-..|.++-|+++.++..++..+.-..+........+.|+.+=++|..-+|..+.... T Consensus 303 tg~~---~vd~~G-~~~~---~~VgPG~iweL~e~ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~~PavA~G~vD~s~~ 375 (527) T protein:vir:10 303 DSAP---PRDSRG-NMVP---WTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMTKAEEAMQQTKGIPDIAVGVVDAAVA 375 (527) T ss_pred cccc---cccccC-CcCc---cccCCceeEecCCCcceeeccchhhhHHHHHHHHHHHHHHHHhhcCCeeeeccccCCcC Confidence 3211 111100 0000 01123456778999999999987655556777888889999999999999995433221 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-H--------------HHHhhh-------hh------ccchhhhhhcChHHHHHHHH Q lcl|Aclame:pro 295 SIQQISGMYASALNRYLRPAISE-L--------------EYKLSD-------HI------SVNMRPAIDPLGDNYLSTIS 346 (392) Q Consensus 295 ~~~~~~~~~~~~l~p~l~~i~~~-l--------------~~~l~~-------~~------~~d~~~~~~~~~~~~~~~~~ 346 (392) -.... .+-.+.|++..-.+. + ...|.- .+ ...+...+-.|.+...+.+. T Consensus 376 ~SG~A---LeL~L~PLlar~~rk~L~~~~vqrq~~~~~~~~~L~aye~v~~~d~~~~~~v~ivf~p~lP~D~~avie~v~ 452 (527) T protein:vir:10 376 ESGIA---LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNSEKRFNQLL 452 (527) T ss_pred cHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcccCCCccccceEEEecccCCCCHHHHHHHHH Confidence 11111 112233433322111 1 111111 11 12222333446677788899 Q ss_pred HHHhCCccCHHHHHHHHHhCCCC--Cc-cccc-----------------------ccC--CCCCCCCCCCCCCC Q lcl|Aclame:pro 347 TATRWGALAENQATFVLQEAGYI--PK-DLPA-----------------------PEN--TNKKTTGQSNEPVP 392 (392) Q Consensus 347 ~~~~~g~~t~nE~R~~l~~~g~~--~~-e~~~-----------------------~~~--~~~~~~gd~~~p~p 392 (392) +++++|++++-=|=++|...|+. |. |..+ +++ .+-...-|+.+|+| T Consensus 453 tL~~aGi~S~~tAv~~L~~~~g~eD~E~E~~~I~~era~~a~a~a~A~~~~~a~~~~~~g~~~~~~d~~~~~~~ 526 (527) T protein:vir:10 453 QLWEAGLIPAKKLTEELSKIMGFELTEEDFKQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNGQP 526 (527) T ss_pred HHHHcCchhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhHHhhhhcCchhhhhccccCCCCCCcccccCCCC Confidence 99999999998887778777652 21 1100 111 11222346667888 No 232 >protein:vir:80453 Length: 535 # NCBI annotation: BcepGomrgp05 # Family: family:all:584 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210225;genbank:gi:146329917;genbank:GeneID:5123562 Probab=59.16 E-value=0.4 Score=22.78 Aligned_cols=368 Identities=9% Similarity=0.002 Sum_probs=146.2 Q ss_pred Cc--------------chhh--hhhccccccc-ccccccccccCcch-----hhhhhhccCCCCcccchhhhhcchHHHH Q lcl|Aclame:pro 1 MI--------------LPIL--NFINQTNDPP-EAGSVQSYFPDGND-----AQIMESLLGDNNEWVSARAALRNSDLFS 58 (392) Q Consensus 1 m~--------------Mg~~--n~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~al~~~~v~~ 58 (392) |+ .+-+ +.+.....-. ....+-++.+ ..+ ...+.. .- ..|.-.+.+.. T Consensus 32 m~dV~~~hp~y~a~~~~W~~ird~~~G~~~~r~~g~~YLP~~~-~~~~~~E~~~~Y~~--------rl-~rA~~~n~~~~ 101 (535) T protein:vir:80 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPS-VDSRDEEQRRRYET--------YL-QRAIFYNVTAR 101 (535) T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHhcChHHHHhcccccCCCCC-cccCCcCCHHHHHH--------HH-hhccCCChhHH Confidence 32 1110 1111100000 0000000000 000 000000 00 11222345556 Q ss_pred HHHHHHHhhhhCceeee-cchhhhhcccCC-ccCCHHHHHHHHHHHHHHhCCeeEEEecccCCcee------------EE Q lcl|Aclame:pro 59 IILQLSSDLAIVKINAE-KKKNQGIIDNPS-TNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADM------------KW 124 (392) Q Consensus 59 ~i~~ia~~ia~lp~~~~-~~~~~~~~~~PN-~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~------------~l 124 (392) .++.++..+-+-|..+. ......++..-. ...+-.+|.+.++...+.+|-+++++.....|... .+ T Consensus 102 tl~~l~G~vfrk~p~~~~p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~iLVD~P~~~~~~t~ade~~~~~rPy~ 181 (535) T protein:vir:80 102 TLDGMMGQVFSRDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTI 181 (535) T ss_pred HHHHHhchhhcCCcceeccHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeecCCCCcccHHHHHhcCCCcEE Confidence 66666666555554332 111222332222 33588899999999999999999998755443210 12 Q ss_pred EEecccc-----------------------ceeeecCCCceEEEEEEe----------------cCCc---ce--ee--- Q lcl|Aclame:pro 125 EYLRPSQ-----------------------VNTYYFEYENGMYYNITF----------------DDPK---IE--PI--- 157 (392) Q Consensus 125 ~~l~~~~-----------------------v~~~~~~~~~~~~~~~~~----------------~~~~---~~--~~--- 157 (392) ..+.|.. +....+.++......+.. .... .. +. T Consensus 182 ~~y~ae~IinW~~~~v~G~~~Lt~v~lrE~~~~~dd~f~~~~~~q~RvL~~~~~G~y~v~~~~~~~~~~~~~~~~~~~~~ 261 (535) T protein:vir:80 182 TLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPT 261 (535) T ss_pred EEechhhccCccccccCCccceeEEEEEEEEEecCCCcccceeEEEEEEEecCCceEEEEEEEeecCCccccccceeecc Confidence 2222211 111111111111111100 0000 00 00 Q ss_pred ----EEEecceEEEecCCCccccccCCCHHHHHHHH-HHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHH Q lcl|Aclame:pro 158 ----LQAPQSDLIHMKLLSIDGGKTGISPLYSLRRE-SKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSR 232 (392) Q Consensus 158 ----~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~-i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~ 232 (392) ..+..=.++++- ....++..|.+|+..++.. +........ ....+...+.|-.+++--.....++ ...... T Consensus 262 ~~g~~~l~~IPfv~~~-~~~~~~~~~~pPLl~LA~lni~Hy~~ssd-~~~il~~~~~P~l~i~G~~~~~~~~--~~~~~~ 337 (535) T protein:vir:80 262 DGNGNPFKEIPFQFIG-PLDNNADIDHPPLLDLCEVNIGHYRNSAD-YEEMAFVAGQPTAFFTGLTKDWVED--VFKDFK 337 (535) T ss_pred cCCCcccCeeEEEEee-cCCCCCCCCccchHHHHHHHHHHhhchhH-HHHHHHHhcCceeeeecCchhhhhc--CCCCcc Confidence 011111222221 2234556788888777654 333333333 3444455666766666321111000 000000 Q ss_pred HHhccccCCceeeccCCce--EEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcC-CcccccchHHHHH-HHHHHHHH Q lcl|Aclame:pro 233 SFMKRSRSGGPVVLDDLEE--FTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIG-GQGDQQSSIQQIS-GMYASALN 308 (392) Q Consensus 233 ~~~~~~~~g~~~vl~~g~~--~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg-~~~~~~~~~~~~~-~~~~~~l~ 308 (392) -..|+ ...+.+++|.+ |.+++.+.-..+.++.+ .+++++ .| ..++. .....+......+ +--.+.|. T Consensus 338 i~iG~---~~~~~lP~~~~~~~~e~~~~~~a~~~l~~~---e~qM~~-lG--a~ll~~~~~~~Ta~~a~~~~~~~~S~L~ 408 (535) T protein:vir:80 338 VHLGS---RAIIPLPQGATAGILQITPNSVPFEAMTHK---ESQMIA-MG--ANLLVKSGGNRTFGEAQQEEASEQSILS 408 (535) T ss_pred eEecC---cccccCCCCCCcceeeeccchhHHHHHHHH---HHHHHH-HH--HHhhccCcccccHHHHHHHHHHHhHHHH Confidence 12232 23566776654 44554443333333333 222222 22 11121 1112222222221 22245577 Q ss_pred HHHHHHHHHHHHHhh---hhhc-----------cchhhhhh-cChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccc Q lcl|Aclame:pro 309 RYLRPAISELEYKLS---DHIS-----------VNMRPAID-PLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDL 373 (392) Q Consensus 309 p~l~~i~~~l~~~l~---~~~~-----------~d~~~~~~-~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~ 373 (392) -+...+++.+++.|- ..++ .+.++... .+.+ ....+-.++++|.++....++.|.+.|+...+. T Consensus 409 ~~a~~le~al~~aL~~~A~w~G~~~~~~~~~i~~n~dF~~~~ld~~-~~~all~~~~~G~Is~et~~~~L~r~gvl~~~~ 487 (535) T protein:vir:80 409 ACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPN-ERAELILEWQQGAITFKEMRAGLRRAGVASEDD 487 (535) T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccCCCceEEEeccccccccCCHH-HHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccc Confidence 777888888876652 1111 11111111 2333 445566888899999999999998888764222 Q ss_pred cc------c--c--C--------CCCCCCCCCCCCCC Q lcl|Aclame:pro 374 PA------P--E--N--------TNKKTTGQSNEPVP 392 (392) Q Consensus 374 ~~------~--~--~--------~~~~~~gd~~~p~p 392 (392) .. . | + .++-.+|+...|.= T Consensus 488 ~~eee~~ri~~E~~~~~~~~g~~~d~~~~g~~~~~~~ 524 (535) T protein:vir:80 488 AKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLN 524 (535) T ss_pred chHHHHHHHHhhhhhccccCCCCCCCCCCCCCcCccc Confidence 11 1 1 1 11112222222222 No 233 >protein:vir:3361 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523332;genbank:gi:17570823;genbank:GeneID:927409 Probab=59.13 E-value=0.4 Score=22.77 Aligned_cols=343 Identities=13% Similarity=0.062 Sum_probs=127.2 Q ss_pred Ccchhhhhhcccccccccc---cccccc---cCcchhhhhhhccCCCCc---ccchhhhh-------cchHHHHHHHHHH Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAG---SVQSYF---PDGNDAQIMESLLGDNNE---WVSARAAL-------RNSDLFSIILQLS 64 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~al-------~~~~v~~~i~~ia 64 (392) .+. +| .......... .+.+.. .....+.+...+++.... .++..... ....|..-.+.+. T Consensus 40 lP~-~~---~~~~~~~~~~~~~~~dst~~~a~~~Laa~l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~l~~ve 115 (535) T protein:vir:33 40 IPS-LF---PKESDNESTDYTTPWQAVGARGLNNLASKLMLALFPMQSWMKLTISEYEAKQLVGDPDGLAKVDEGLSMVE 115 (535) T ss_pred ccc-cc---CCCCCcccccccccccccHHHHHHHHHHHHHHhhcCCCcccccccChHHHhccccCcchHHHHHHHHHHHH Confidence 221 11 1100000000 000000 000000011111111000 01110000 0011111111111 Q ss_pred HhhhhCceeeecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCC-ceeEEEEeccccceeeecCCCc-- Q lcl|Aclame:pro 65 SDLAIVKINAEKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANG-ADMKWEYLRPSQVNTYYFEYEN-- 141 (392) Q Consensus 65 ~~ia~lp~~~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G-~~~~l~~l~~~~v~~~~~~~~~-- 141 (392) +.+ ...+.+=| .+.=+..+..+|..+|++.+++..+..+ .....+|+ ..+-+..|..|. T Consensus 116 ~~~------------~~~~~~sn----f~~~~~~~~~~L~~~G~a~l~~~~~~~~~~~f~~~pl--~~~~v~~d~~G~vd 177 (535) T protein:vir:33 116 RII------------MNYIESNS----YRVTLFECLKQLIVAGNALLYLPEPEGSYNPMKLYRL--SSYVVQRDAYGNVL 177 (535) T ss_pred HHH------------HHHHHhcC----cHHHHHHHHHHHHhhCceeEEeecCCCCceeeEEEEc--CeeEEeeCCCCCee Confidence 111 11122233 2333345567777899999988755322 22333333 333333332221 Q ss_pred -----------------------------------------------eEEEEEEecCCcc-e--eeEEEecceEEEecCC Q lcl|Aclame:pro 142 -----------------------------------------------GMYYNITFDDPKI-E--PILQAPQSDLIHMKLL 171 (392) Q Consensus 142 -----------------------------------------------~~~~~~~~~~~~~-~--~~~~~~~~~vih~~~~ 171 (392) ....++...+... + ....+....++..|.. T Consensus 178 ~i~r~~~~t~~ql~~~~~~~~~~~~~~k~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~Rw~ 257 (535) T protein:vir:33 178 QIVTRDQIAFGALPEDVRSAVEKSGGEKKMDEMVDVYTHVYLDEESGDYLKYEEVEDVEIDGSDATYPTDAMPYIPVRMV 257 (535) T ss_pred EEEeeEeecHHHHHHHhhhhhcccccccccccCCeEEEEEEeeCCCCcEEEEEEEeCccccccccccccccCCceeeeee Confidence 1111111111000 0 1112333455666666 Q ss_pred CccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceee--ccCC Q lcl|Aclame:pro 172 SIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVV--LDDL 249 (392) Q Consensus 172 ~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v--l~~g 249 (392) ..++-.||.||+..+...+...+.+.+...........|..++.-++.....+ .. .+.. +.++ -.++ T Consensus 258 ~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~lv~~~g~~~~~~-~~-------~~~~---g~~v~g~~~~ 326 (535) T protein:vir:33 258 RIDGESYGRSYCEEYLGDLRSLENLQEAIVKMSMISAKVIGLVNPAGITQPRR-LT-------KAQT---GDFVPGRRED 326 (535) T ss_pred ecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeccccccchhh-cc-------cCCc---eeeecCCccc Confidence 67777899999999999999999998888888888887876654332221111 00 1111 1122 2344 Q ss_pred ceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-c Q lcl|Aclame:pro 250 EEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSI-QQISGMYASALNRYLRPAISELEYKLSDHI-S 327 (392) Q Consensus 250 ~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~-~~~~~~~~~~l~p~l~~i~~~l~~~l~~~~-~ 327 (392) +...++...+.-.-..+..+..+.+|-.+|-+.....-....-|..+ .....-....|.|.+..+.++|-.-|...+ . T Consensus 327 v~~~~~~~~~~~~~~~~~i~~~~~~I~~af~~~~~~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~ 406 (535) T protein:vir:33 327 IDFLQLEKQADFTVAKAVSDQIEARLSYAFMLNSAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLK 406 (535) T ss_pred ceeeecccccchhHHHHHHHHHHHHHHHHHhhhhcccCCCccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH Confidence 45555554433233456667777888888855421111111112222 223344556677777777776654332210 0 Q ss_pred c-chhhhhhcChHHHHHHHHHHHhCCccCH-------HHHHHHHHhCCCCCcccccccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 328 V-NMRPAIDPLGDNYLSTISTATRWGALAE-------NQATFVLQEAGYIPKDLPAPENTNKKTTGQSNEPVP 392 (392) Q Consensus 328 ~-d~~~~~~~~~~~~~~~~~~~~~~g~~t~-------nE~R~~l~~~g~~~~e~~~~~~~~~~~~gd~~~p~p 392 (392) . .-...+..-+.+ +++..+.|+ .++-.++...+. .-.+.| +..|.. --+ T Consensus 407 il~r~g~lP~~p~~-------~v~~~yis~La~aqr~~~~~~l~~~~~~-------la~~~P-~~~d~~-id~ 463 (535) T protein:vir:33 407 QLQATSQIPELPKE-------AVEPTISTGLEAIGRGQDLDKLERCISA-------WAALAP-MQGDPD-INL 463 (535) T ss_pred HHHhcCCCCCCCcc-------ceeEEEecHHHHHHHHHHHHHHHHHHHH-------HHhhCh-hhhhcc-CCH Confidence 0 000000000000 001111111 111111111010 001111 000000 001 No 234 >protein:vir:1538 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052106;swissprot:trembl:q9t110;genbank:gi:9634032;uniprot:Q9T110;genbank:GeneID:1262384 Probab=57.07 E-value=0.44 Score=22.53 Aligned_cols=343 Identities=13% Similarity=0.059 Sum_probs=126.9 Q ss_pred CcchhhhhhcccccccccccccccccC------cchhhhhhhccCCCCc---ccchhhh-------hcchHHHHHHHHHH Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPD------GNDAQIMESLLGDNNE---WVSARAA-------LRNSDLFSIILQLS 64 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~---~~~~~~a-------l~~~~v~~~i~~ia 64 (392) .+. +| ..............+-+. ...+.+...+++.... .++.... .....|..-.+.+. T Consensus 40 lP~-~~---~~~~~~~~~~~~~~~dst~~~a~~~Laa~l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve 115 (535) T protein:vir:15 40 IPS-LF---PKESDNESTDYTTPWQAVGARGLNNLASKLMLALFPMQSWMKLTISEYEAKQLVGDPDGLAKVDEGLSMVE 115 (535) T ss_pred ccc-cc---CCCCCcccccccccccccHHHHHHHHHHHHHHhhcCCCcccccccChHHHhccCCCcchHHHHHHHHHHHH Confidence 221 11 110000000000000000 0000011111110000 0010000 00111222222111 Q ss_pred HhhhhCceeeecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCC-ceeEEEEeccccceeeecCCC--- Q lcl|Aclame:pro 65 SDLAIVKINAEKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANG-ADMKWEYLRPSQVNTYYFEYE--- 140 (392) Q Consensus 65 ~~ia~lp~~~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G-~~~~l~~l~~~~v~~~~~~~~--- 140 (392) +.+ ...+.+=| .+.=+..+..+|..+|++.+++..+..+ .+...+|+ ..+.+..+..| T Consensus 116 ~~~------------~~~l~~sn----f~~~~~~~~~~L~~~G~a~l~~~~~~~~~~~f~~~pl--~~~~v~~d~~G~vd 177 (535) T protein:vir:15 116 RII------------MNYIESNS----YRVTLFECLKQLIVAGNALLYLPEPEGSYNPMKLYRL--SSYVVQRDAYGNVL 177 (535) T ss_pred HHH------------HHHHHhcC----cHHHHHHHHHHHHhhCceeEEeecCCCCceeeEEEEc--CeeEEeeCCCCCee Confidence 111 11122223 2333445667777899998887654332 23333444 22333222222 Q ss_pred ----------------------------------------------ceEEEEEEecCCcc-e--eeEEEecceEEEecCC Q lcl|Aclame:pro 141 ----------------------------------------------NGMYYNITFDDPKI-E--PILQAPQSDLIHMKLL 171 (392) Q Consensus 141 ----------------------------------------------~~~~~~~~~~~~~~-~--~~~~~~~~~vih~~~~ 171 (392) +...++....+... + ....+....++..|.. T Consensus 178 ~i~r~~~~t~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~v~~~~~~~~~~~~~e~~g~~~~~~~~~~~~~~~P~i~~Rw~ 257 (535) T protein:vir:15 178 QIVTRDQIAFGALPEDVRSAVEKAGGEKKMDEMVDVYTHVYLDEESGDYLKYEEVEDVEIDGSDATYPTDAMPYIPVRMV 257 (535) T ss_pred EEEEeEeecHHHHHHHHhHhhhccccccCCCCceeEEEEEEEecCCCcEEEEEEeeCccccccccccccccCCceeeeee Confidence 11111111111111 0 1112333455666666 Q ss_pred CccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceee--ccCC Q lcl|Aclame:pro 172 SIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVV--LDDL 249 (392) Q Consensus 172 ~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v--l~~g 249 (392) ..++-.||.||+..+...+...+.+.+...........|..++.-++.....+ .. .+.. +.++ -.++ T Consensus 258 ~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~lv~~~g~~~~~~-l~-------~~~~---g~~v~g~~~~ 326 (535) T protein:vir:15 258 RIDGESYGRSYCEEYLGDLRSLENLQEAIVKMSMISAKVIGLVNPAGITQPRR-LT-------KAQT---GDFVPGRRED 326 (535) T ss_pred ecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeecccccccchh-cc-------cCCc---eeeecCCccc Confidence 67777899999999999999999998888888888887876654332222111 00 0110 1122 2344 Q ss_pred ceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-c Q lcl|Aclame:pro 250 EEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSI-QQISGMYASALNRYLRPAISELEYKLSDHI-S 327 (392) Q Consensus 250 ~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~-~~~~~~~~~~l~p~l~~i~~~l~~~l~~~~-~ 327 (392) +...++...+.-.-..+..+..+.+|-.+|-+.....-....-|..+ .....-....|.|.+..+.++|-.-|...+ . T Consensus 327 v~~~~~~~~~~~~~~~~~i~~~~~~I~~af~~~~~~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~ 406 (535) T protein:vir:15 327 IDFLQLEKQADFTVAKAVSDQIEARLSYAFMLNSAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLK 406 (535) T ss_pred ceeeecccccchhHHHHHHHHHHHHHHHHHhhhhcccCCCccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH Confidence 45555554433223456667777888888855421111111112222 223344556677777777776654332210 0 Q ss_pred c-chhhhhhcChHHHHHHHHHHHhCCccCH-------HHHHHHHHhCCCCCcccccccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 328 V-NMRPAIDPLGDNYLSTISTATRWGALAE-------NQATFVLQEAGYIPKDLPAPENTNKKTTGQSNEPVP 392 (392) Q Consensus 328 ~-d~~~~~~~~~~~~~~~~~~~~~~g~~t~-------nE~R~~l~~~g~~~~e~~~~~~~~~~~~gd~~~p~p 392 (392) . .-...+..-+.+ +++..+.|+ .++-.++...+. .-.+.| +..|.. --+ T Consensus 407 il~r~g~lP~~p~~-------~v~~~yis~La~aqr~~~~~~l~~~~~~-------la~~~P-~~ld~~-id~ 463 (535) T protein:vir:15 407 QLQATSQIPELPKE-------AVEPTISTGLEAIGRGQDLDKLERCISA-------WAALAP-MQGDPD-INL 463 (535) T ss_pred HHHhcCCCCCCCcc-------ceeEEEecHHHHHHHHHHHHHHHHHHHH-------HHhcCh-hhhhcc-CCH Confidence 0 000000000000 001111111 111111111010 001111 000000 001 No 235 >protein:vir:103765 Length: 549 # NCBI annotation: hypothetical protein # Family: family:all:481 # MgeID: mge:1645 # MgeName: BcepC6B # Cross-refs: genbank:acc:YP_024925;genbank:gi:48697195;genbank:GeneID:2846089 Probab=56.96 E-value=0.44 Score=22.51 Aligned_cols=336 Identities=11% Similarity=-0.044 Sum_probs=130.5 Q ss_pred Ccch--hh--hhhcccccc-ccccccccc---ccCcchhhhhhhccCCCC----cccchhhhhcchHHHHHHHHHHHhhh Q lcl|Aclame:pro 1 MILP--IL--NFINQTNDP-PEAGSVQSY---FPDGNDAQIMESLLGDNN----EWVSARAALRNSDLFSIILQLSSDLA 68 (392) Q Consensus 1 m~Mg--~~--n~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~al~~~~v~~~i~~ia~~ia 68 (392) +++. |+ ..-...... .....+.+. ......+.+...+++.+. ..+..........|..-++.+...+- T Consensus 38 lP~~~~~~~~~~~~~~~~~~~~~~~~dstg~~a~~~LAs~l~~~ltpp~~~wF~l~~~~~~~~e~~~v~~~l~~ve~~~~ 117 (549) T protein:vir:10 38 MPRLDKFGQLPRPDSEKGRERSQKMFDSTAPLALRNFVAAMDSMITPATQLWHRLKTGNDALNEIASVKAYLQGVVRTLF 117 (549) T ss_pred ccccccccccCCCCCCcccccccccccchHHHHHHHHHHHHHhhccCCCCccccccCCccchhhhhHHHHHHHHHHHHHH Confidence 3332 11 111110000 000000000 000000000000000000 00000000011111111111111110 Q ss_pred hCceeeecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceEEEEEE Q lcl|Aclame:pro 69 IVKINAEKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNIT 148 (392) Q Consensus 69 ~lp~~~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~~~~~~ 148 (392) .+ ....+-|. +.=+..+..+|..+|++.+++..+. +..+.+..+|...+-+..|..|.....+.. T Consensus 118 ~~----------~~~~~snf----~~~~~~~~~~L~~~Gta~l~~~~~~-~~~~~f~~~pl~~~~v~~d~~G~vd~i~r~ 182 (549) T protein:vir:10 118 AA----------RYRWQGGF----VTQMGATYQSIGLFGPGALMIEHDV-GKGIVYRNVPMQRLWFAENNSGLIDKTHVQ 182 (549) T ss_pred HH----------HhhhhcCh----HHHHHHHHHHHHhhcceeeEEeecC-CCeeEEEEEEcCeEEEeeCCCCCeEEEEEE Confidence 00 00011222 2223456678889999999987553 334555555555666655555443221100 Q ss_pred -----------ecC-------------Ccce----------------------------eeE------E-----EecceE Q lcl|Aclame:pro 149 -----------FDD-------------PKIE----------------------------PIL------Q-----APQSDL 165 (392) Q Consensus 149 -----------~~~-------------~~~~----------------------------~~~------~-----~~~~~v 165 (392) +.. .... ... . +....+ T Consensus 183 ~~~t~~ql~~~fg~~~l~~~v~~~~~~~~~~~~~v~~~V~pr~~~~~~~~~~~~~pf~sv~~e~~~~~il~esg~~e~P~ 262 (549) T protein:vir:10 183 WELTLRQAAQRFGRENLSPSMQSTLEKDPEKSAIFYHAVEPRADRDPRKLDGRNMQFASYWLDEGRDRIVQNSGFRTFPF 262 (549) T ss_pred eecCHHHHHHhcCcccCCHHHHHHhhcCCCceEEEEEEeecCCCCCccccccccCceEEEEEEecCCEeeccCCcccCCc Confidence 000 0000 000 0 111222 Q ss_pred EEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceee Q lcl|Aclame:pro 166 IHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVV 245 (392) Q Consensus 166 ih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v 245 (392) +-.|....+|-.||.||+..+...+...+.+.+...........|...+..++.....+ . .-|..+. ... T Consensus 263 ~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~~v~~~g~~~~~~--l------~pgg~~~--~~~ 332 (549) T protein:vir:10 263 AIGRFYVGTDDVYGGSPAYDAMPDVRMANDMAKTNIRGAQKLVDPPLLANEDGVLDGFD--L------RSGALNW--GGL 332 (549) T ss_pred ceeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeccccccccce--e------ccCCccc--ccc Confidence 33344445666899999999999999999998888888888777777654333222111 0 1111111 111 Q ss_pred -ccCCceEEeccCChhhHH-HHHHHHHHHHHHHHHhcccHH-HcCCcccccchH-HHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 246 -LDDLEEFTALEIKSNVAQ-LLSQTDWTSKQYAKVYGLPDS-YIGGQGDQQSSI-QQISGMYASALNRYLRPAISELEYK 321 (392) Q Consensus 246 -l~~g~~~~~l~~~~~d~~-~~e~~~~~~~~Ia~~fgVP~~-~lg~~~~~~~~~-~~~~~~~~~~l~p~l~~i~~~l~~~ 321 (392) -.+...++|+... .+.+ ..+..+..+.+|-.+|-+... ++-....-|..+ ..........|.|....+.++|-.- T Consensus 333 ~~~~~~~~~pl~~~-~~~~~~~~~i~~~~~rI~~af~~d~~~~~~~~~~~TAtEV~~r~~E~~~~LGpv~~rl~~E~l~P 411 (549) T protein:vir:10 333 NDKGEEMVKPLLTG-KQAQIGIEFAQDTRQTINQWFYVTLFQILVDSGDMTATEVLQRAQEKGVLLAPTLGRTQSELLGP 411 (549) T ss_pred CCCCccceeeeccc-cchhHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH Confidence 1223456776554 3333 345567777899999987763 331222223332 2334455577788888777766332 Q ss_pred hhhhhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccccc------ccCCCCCCC----------- Q lcl|Aclame:pro 322 LSDHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPA------PENTNKKTT----------- 384 (392) Q Consensus 322 l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~------~~~~~~~~~----------- 384 (392) |.. -.+..+.+.|.+ +-.|.++.. .+...++.- T Consensus 412 li~------------------R~~~il~r~g~l------------P~~p~~l~~~~~~~~i~yis~La~aq~~~~~~~i~ 461 (549) T protein:vir:10 412 MIA------------------REVDILAEAGQL------------PDMPQELIDAGADVDVEYDSPLNKAMRAGEGAAIL 461 (549) T ss_pred HHH------------------HHHHHHHhcCCC------------CCCChhhhcCCceeEEEeecHHHHHHHHHHHHHHH Confidence 211 111122222221 111111100 000000000 Q ss_pred ------CCCCCCCC Q lcl|Aclame:pro 385 ------GQSNEPVP 392 (392) Q Consensus 385 ------gd~~~p~p 392 (392) |.--+--| T Consensus 462 ~~~~~~~~laq~~P 475 (549) T protein:vir:10 462 QWLQQLGIVSQFDP 475 (549) T ss_pred HHHHHHHHHhccCh Confidence 00000112 No 236 >protein:vir:100598 Length: 516 # NCBI annotation: gp20 head portal vertex protein # Family: family:all:1036 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656382;genbank:gi:109290133;genbank:GeneID:4156576 Probab=53.57 E-value=0.53 Score=22.12 Aligned_cols=374 Identities=10% Similarity=0.124 Sum_probs=145.3 Q ss_pred chhhhhhccc-------ccccccccccccccCcchh---------------hhhhhccCCCCcc------cc-hhhhhcc Q lcl|Aclame:pro 3 LPILNFINQT-------NDPPEAGSVQSYFPDGNDA---------------QIMESLLGDNNEW------VS-ARAALRN 53 (392) Q Consensus 3 Mg~~n~~~~~-------~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~------~~-~~~al~~ 53 (392) |.++.+|+-- ..........+..++..+. +++..+.+..+.. |+ -+..+.+ T Consensus 1 ~~~~~lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~DGa~~i~~~~~~~~~~g~~~~~~d~~~~~~~~~~LI~~YR~ma~~ 80 (516) T protein:vir:10 1 MKFLDLFKFWDRVDQNEYDERLKQGHESIATPKKDDGATEIEAREGESSYNALMQQFFGIDNNISGTKDLINTYRQLTNN 80 (516) T ss_pred CCchHhcccccchhhHHHHhhhcCCCCcccCCCCccCceeeecCcccccccceeeeeecccCccccHHHHHHHHHHhhhc Confidence 4333332210 0001111112222222221 1112222222211 11 1345568 Q ss_pred hHHHHHHHHHHHhhhhC-----ceeeecchh--------------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEe Q lcl|Aclame:pro 54 SDLFSIILQLSSDLAIV-----KINAEKKKN--------------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRW 114 (392) Q Consensus 54 ~~v~~~i~~ia~~ia~l-----p~~~~~~~~--------------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~ 114 (392) |.|..||+.|.+.+.-. |+.+.=.+. +.++.--|-...+++ ++..|...|..|..++ T Consensus 81 pEvd~Av~eIvneaiv~d~~~~pV~l~l~~~e~s~sik~kI~eeF~~Il~ll~F~~~~~~----~fR~WYVDgRi~fhKi 156 (516) T protein:vir:10 81 PEVERAVANIVNEAVVYEKGHKVVSLDLDDTEFSSSIKDKILEEFDEICRLLDASRKLDT----LFRRWYIDSRIFFHKI 156 (516) T ss_pred cchhHHHHHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhH----HHHhhhhcceEEEEEE Confidence 99999999999887544 222210000 111222333344444 4556667898888755 Q ss_pred c-ccCCceeEEEEeccccceeeecC-----CC------ceEEEEEE-------ecCC--cceeeEEEecceEEEecCCCc Q lcl|Aclame:pro 115 R-NANGADMKWEYLRPSQVNTYYFE-----YE------NGMYYNIT-------FDDP--KIEPILQAPQSDLIHMKLLSI 173 (392) Q Consensus 115 r-~~~G~~~~l~~l~~~~v~~~~~~-----~~------~~~~~~~~-------~~~~--~~~~~~~~~~~~vih~~~~~~ 173 (392) - +.+.-..+|..|+|..+..+..- .+ ...++.|. +.+. ..+..+.++.+-|.+ -+.+. T Consensus 157 id~~k~GI~elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI~~daI~y-~hSGl 235 (516) T protein:vir:10 157 MPNPKEGIVELRRLDPRHVEYYREIVTSDVGGTSVVKGYREFFVYTTGNEGYAYNGRLFEPNTRIKIPRSAIVY-AHSGL 235 (516) T ss_pred ecCcccceeeeeeeCCcceeeEEeeecccCcchhhhhceeeeeeeecCccceeccccccCCCCceecchhheee-eecCc Confidence 3 33445889999999998876422 11 11122221 1110 111224445444433 33222 Q ss_pred cccc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCc----------------------------- Q lcl|Aclame:pro 174 DGGK--TGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLL----------------------------- 222 (392) Q Consensus 174 ~~~~--~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~----------------------------- 222 (392) .+.. .=+|-|..+.+.+....-++....-+=-..+.-+=|.-++=+..+ T Consensus 236 ~d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYl~~iM~k~KNklvYDa~TGev~ 315 (516) T protein:vir:10 236 QDCSDRGIVGYLHNAVKPANQLKLLEDALVIYRITRAPERRVFYIDVGNMPNRKATEYVNGIMQSLKNRVVYDSNTGTVK 315 (516) T ss_pred ccCCCCceeceehhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCeec Confidence 2111 113445555444444333333222211111111112222211111 Q ss_pred hHHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccccc----chHH- Q lcl|Aclame:pro 223 SDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ----SSIQ- 297 (392) Q Consensus 223 ~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~----~~~~- 297 (392) .++..-...+.|+-..+.| +.|.+++.|..... +.-++-..+..+.+..+++||..-|+..+..+ .+.+ T Consensus 316 ddrk~msMlEDyWLpRReG-----grgTEItTLpGgqn-lgem~DV~YF~kkLy~aLnVP~SRl~~e~~~~~~~Gr~~EI 389 (516) T protein:vir:10 316 NQKRNLSMTEDYWLMRRDG-----KSVTEVTSLPGAQT-MGEMDDVRWFNKKLYEALRIPLSRMPRDDGGMVIGGQDMAI 389 (516) T ss_pred cchhhhhhHhhhcccccCC-----CcccceeeccccCC-cChHHHHHHHHHHHHHHhCCCcccccCCCCceeeccccchh Confidence 1111112222233222222 25666666665422 22245566777899999999999997543311 1112 Q ss_pred -HHHHHHHHHHHHHHHHHHH----HHHHHhh-hh---------hccchhhhhhcCh--HH------HHHHHHHHH----- Q lcl|Aclame:pro 298 -QISGMYASALNRYLRPAIS----ELEYKLS-DH---------ISVNMRPAIDPLG--DN------YLSTISTAT----- 349 (392) Q Consensus 298 -~~~~~~~~~l~p~l~~i~~----~l~~~l~-~~---------~~~d~~~~~~~~~--~~------~~~~~~~~~----- 349 (392) .-+--+..++.-+-..+.. .|...|. +. +.-+++..+..|. .+ +..+++.+- T Consensus 390 tRDEiKF~KFI~rLR~rFs~lF~~~L~~qLilKgIit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpy 469 (516) T protein:vir:10 390 TRDELDFRKFIVQLQHNFEEIFLDPLKTNLIYKKIILESEWEEQINNIKVNFHQDSYYTELKDIETLRQRVDALSQIEPY 469 (516) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhh Confidence 1233345555555444333 3333331 11 1111111111111 11 112222221 Q ss_pred hCCccCHHHHHHHHHhCCCCCccccccc---------CCCCCCCCCCCC Q lcl|Aclame:pro 350 RWGALAENQATFVLQEAGYIPKDLPAPE---------NTNKKTTGQSNE 389 (392) Q Consensus 350 ~~g~~t~nE~R~~l~~~g~~~~e~~~~~---------~~~~~~~gd~~~ 389 (392) -+..++.+=+|+... .+.-.|+...+ +.-+.|...++- T Consensus 470 vGky~s~~yi~k~IL--r~tDeei~~~~k~I~~E~~~~~~~~p~~e~~f 516 (516) T protein:vir:10 470 VGKYVSHDYVMKNIL--QMTDEQIAQEEKQIEKEANVKRFQNPENEDDF 516 (516) T ss_pred hccccchHHHHHHHh--cCCHhHHHHHHHHHHHhhhCCCCCCCCccccC Confidence 245566655544321 11112221111 011111111111 No 237 >protein:vir:9922 Length: 489 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795684;genbank:gi:28876464;genbank:GeneID:1257980 Probab=50.79 E-value=0.6 Score=21.80 Aligned_cols=376 Identities=14% Similarity=0.073 Sum_probs=143.0 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhhhCceeeec--ch Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEK--KK 78 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~--~~ 78 (392) =+..+.+.+...... .-.....++. +...-........... +..-+..+-..-+|+..+.-+-.-|++..- .. T Consensus 19 ~~~~~i~~~~~~~~~-r~~~~~~yy~-g~~~i~~~~~~~~~~~---~~~ki~~n~~~~iv~~~~~~l~g~~~~~~~~d~~ 93 (489) T protein:vir:99 19 QLKNYISRFKAEQLE-RLKELKRYYL-GDNNIKYRPAKTDKYA---ADNRIASDFAKYITVFEQGYMLGVPVEYKNENKD 93 (489) T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhc-ccCccccccccccccC---CcceeecchHHHHHHHHhhhhccCCceeecCChh Confidence 111222111111000 0000111110 0000000000000000 001122344555666666666555665432 22 Q ss_pred hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEec----ccCCceeEEEEeccccceeeecCCC-c-eEEEE--EEec Q lcl|Aclame:pro 79 NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWR----NANGADMKWEYLRPSQVNTYYFEYE-N-GMYYN--ITFD 150 (392) Q Consensus 79 ~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r----~~~G~~~~l~~l~~~~v~~~~~~~~-~-~~~~~--~~~~ 150 (392) ....+.+=........+...+..+.+.+|.+|..+.. +.+|+ ..+..++|..+.+..+... + ..+.. +... T Consensus 94 ~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~~~~~d~~~~-~~i~~~~p~~~~~v~dd~~~~~~~~~i~~~~~~ 172 (489) T protein:vir:99 94 LQAAIDLMSVRNNEDYHNVKIKTDLSIYGRAYELLTVEKIDDKKTE-VKLYQLPAEQTFVIYDDTYQRNSLMAVHFYDID 172 (489) T ss_pred HHHHHHHHHhhcChhHHHHHHHHHHhhCCeEEEEEeeccCcCCCcc-eEEEEEcccceEEEEcCCCCCceEEEEEEEEEe Confidence 2222222111223345567778888999999987653 33443 4477788888877766433 1 22111 1111 Q ss_pred CC--cc-eeeEEEecce----------------------------EEEecCCCccccccCCCHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 151 DP--KI-EPILQAPQSD----------------------------LIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRL 199 (392) Q Consensus 151 ~~--~~-~~~~~~~~~~----------------------------vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~ 199 (392) .. .. .....+.++. |+|++++ ..|.|.+..+...++....+... T Consensus 173 ~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~-----~~~~s~~~~v~~liDa~d~~~s~ 247 (489) T protein:vir:99 173 YGSGKRKQIIKAYTSDTIYTYEDYNLETKGMRLKDYEGHFFKGVPVNEYANN-----EERTGAYESVLDNIDAYDLSQSE 247 (489) T ss_pred cCCCceEEEEEEEeCCcEEEEEecCCCcccceecccccccCCceeEEEeecC-----CCCCCchhhhHHHHHHHHHHHHH Confidence 10 00 0111122222 3333321 24667777666666666555444 Q ss_pred HHHHHHccCCcceEEeeCCCCCchHHH-HHHHHHH------HhccccCCceeeccCC-------ceEEeccCChhhHHHH Q lcl|Aclame:pro 200 TISSLNSSLNVPGVLTVKGGGLLSDKD-KASRSRS------FMKRSRSGGPVVLDDL-------EEFTALEIKSNVAQLL 265 (392) Q Consensus 200 ~~~~~~ng~~~~~i~~~~~~~~~~~~~-~~~~~~~------~~~~~~~g~~~vl~~g-------~~~~~l~~~~~d~~~~ 265 (392) ..+.....+.|-.+++-......+... ....... .......++++.++.+ .+.+-+.....+..+. T Consensus 248 ~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (489) T protein:vir:99 248 LANFQQDSVNALLVIAGNAYTGADENDYLDDGRLNPNGRLAISIGFKKAQVLILDDNPNPNGVKPQAYFLKKEYDTAGSE 327 (489) T ss_pred HHHHHHHhhhhhhhhccCCcccccchhhhhhcccccccccccccccccceeeeeccccCccccccceeeeeecCChHHHH Confidence 444444444444444321111111111 1111100 0011112334444332 2233333332333445 Q ss_pred HHHHHHHHHHHHHhcccHHHcCCcccccchHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhh-------- Q lcl|Aclame:pro 266 SQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQIS--------------GMYASALNRYLRPAISELEYKLS-------- 323 (392) Q Consensus 266 e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~--------------~~~~~~l~p~l~~i~~~l~~~l~-------- 323 (392) ...+...+.|...-++|..-..... ++.+..+.+ ..+...+.-.++.+.+.+...-. T Consensus 328 ~~~~~l~~~i~~~s~~p~~~~~~~~-~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~~ 406 (489) T protein:vir:99 328 AYKNRLVADILRFTFTPDTQDMKFS-GVQSGESMKYKLMASDNYREKQERLFKKGLMRRLRLAANIWAIKGNEATTYSLV 406 (489) T ss_pred HHHHHHHHHHHHHhCCccccccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccc Confidence 5667778888888888853321111 122222222 22333333333333333221100 Q ss_pred hhhccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCcc----ccccc-------C-CCCCCCC---CCC Q lcl|Aclame:pro 324 DHISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKD----LPAPE-------N-TNKKTTG---QSN 388 (392) Q Consensus 324 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e----~~~~~-------~-~~~~~~g---d~~ 388 (392) .++.+.+..-+-.+..+.+..+.++ .|+++...+.+++ .++...+ +.++. . ..+...| ++. T Consensus 407 ~~i~v~f~~~~p~d~~~~~~~~~kl--~giis~et~~~~l--~~v~~~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~ 482 (489) T protein:vir:99 407 NDTSIVFTPNLPQNDNEIVTAAQNL--YGIVSDQTIFEIL--NTVTGVDAEAELKRLKEEADKKQSLPEPRLVGDASGQE 482 (489) T ss_pred ccceEEeCCCCCcCHHHHHHHHHHH--hccCCHHHHHHhc--CCCCchhHHHHHHHHHHHHHHHhccccccccCCCCCCc Confidence 0122222222223455566666665 4788887776654 1222211 11110 0 1111111 122 Q ss_pred CCCC Q lcl|Aclame:pro 389 EPVP 392 (392) Q Consensus 389 ~p~p 392 (392) +|.| T Consensus 483 ~~~~ 486 (489) T protein:vir:99 483 EPTA 486 (489) T ss_pred CCCC Confidence 2333 No 238 >protein:vir:81017 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469501;genbank:gi:157311458;genbank:GeneID:5602316 Probab=47.50 E-value=0.7 Score=21.43 Aligned_cols=373 Identities=10% Similarity=0.086 Sum_probs=143.7 Q ss_pred Ccchhhhhhcc-cccccccccccccccCcchhhh-----------------hhhccCCCCcc------cc-hhhhhcchH Q lcl|Aclame:pro 1 MILPILNFINQ-TNDPPEAGSVQSYFPDGNDAQI-----------------MESLLGDNNEW------VS-ARAALRNSD 55 (392) Q Consensus 1 m~Mg~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~------~~-~~~al~~~~ 55 (392) =.|.+|-.+.. +....-.....+..++..+.+. ...+.+..+.. +. -+..+.+|. T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~s~~~P~~~dGa~~i~~~~~~~~~~~gg~~~~~~~~e~~~~~~~eLI~~YR~ma~~pE 85 (521) T protein:vir:81 6 KMLARWADFDNDKYEEQIKDKAESIAAPKNNDGATEVEINDNLPASAWNSLTQQFYSTDQKISTTKQLVNTYRGLMNNHE 85 (521) T ss_pred hhhHhhcCchhhhHHhhhccCccccccCCCCCCceEecccCCCcceeecceeeeecccccchhhHHHHHHHHHHHhhccc Confidence 22333321111 1111101111222222211111 11111111111 11 134456899 Q ss_pred HHHHHHHHHHhhhhCc-----eeeecch--------------hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecc Q lcl|Aclame:pro 56 LFSIILQLSSDLAIVK-----INAEKKK--------------NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRN 116 (392) Q Consensus 56 v~~~i~~ia~~ia~lp-----~~~~~~~--------------~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~ 116 (392) |..||+-|.+.+.-.. +.+.=.+ -+.++.--|-...+++ ++.+|...|..|..++-+ T Consensus 86 vd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~----~fR~WYVDgRi~fhkiid 161 (521) T protein:vir:81 86 VENAVQNIVNDAIVFEEGHEVVSLNLEATGFSESVKERIHEEFKDLLNTIQFDRRGQD----MFRRWYVDSRIFFHKIIG 161 (521) T ss_pred hhhHHHHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhH----HHhhhhhcceEEEEEEEc Confidence 9999999998875442 2221000 0111222233334443 455667899999988743 Q ss_pred --cCCceeEEEEeccccceeeecCC-----Cc------eEEEEEEecCC---------cceeeEEEecceEEEecCCCcc Q lcl|Aclame:pro 117 --ANGADMKWEYLRPSQVNTYYFEY-----EN------GMYYNITFDDP---------KIEPILQAPQSDLIHMKLLSID 174 (392) Q Consensus 117 --~~G~~~~l~~l~~~~v~~~~~~~-----~~------~~~~~~~~~~~---------~~~~~~~~~~~~vih~~~~~~~ 174 (392) .+.-..+|..|+|..+..+.... +. ..++.|...+. ..+..+.++.+-|.+. +.+.. T Consensus 162 ~~pk~GI~Elr~lDPr~i~~vr~i~k~~~~~~~v~~~~~e~f~Y~~~~~~~~~~g~~~~~~~~vkI~~dAI~y~-hSGl~ 240 (521) T protein:vir:81 162 KNPKDGIVELRQLDPRNLEYVREIITEDTPEGKIYKATKEYFIYTVGNSSYCAGGQVFSPNSRVKIPRSAITYA-HSGLM 240 (521) T ss_pred CCccccceeeeeeCCcceeeeeeecccccCccceecceeeeeeeecCCccccccceeecCCcceeechhheeee-eccce Confidence 33458899999999888764221 11 11222211100 1112344454444333 22222 Q ss_pred ccc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH---HHHHHHHHHHhc----------ccc Q lcl|Aclame:pro 175 GGK--TGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD---KDKASRSRSFMK----------RSR 239 (392) Q Consensus 175 ~~~--~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~----------~~~ 239 (392) +.. .=+|-|..+.+.+....-++....-+=-..+.-+=|.-++=+..+.. +-.+.....+.. ..+ T Consensus 241 d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlpk~KAeqYl~~im~k~kNklvYDa~TGev~d 320 (521) T protein:vir:81 241 DCDDKYIIGYLHRAVKPANQLKLLEDAMVVYRITRAPERRVFFIDTGNMNNRKAAQHMNSVAQSFKNRVVYDASTGKLKN 320 (521) T ss_pred eCCCCeeeecchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEeecccccccc Confidence 211 11344555555554444444333222111111122222222211111 111122222211 011 Q ss_pred CCc-eeec----------cCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccccc-----ch-HHHHHHH Q lcl|Aclame:pro 240 SGG-PVVL----------DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ-----SS-IQQISGM 302 (392) Q Consensus 240 ~g~-~~vl----------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~-----~~-~~~~~~~ 302 (392) ..+ ...+ +.|.+++.|..... +.-++-..+..+.+..+++||..-|+.+++.. ++ ..--+-- T Consensus 321 drk~msMlEDyWLpRReGgrgTEItTLpGgqn-lgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiK 399 (521) T protein:vir:81 321 QQANLSMTEDYWLQRRDGKAITDVTTLPGASG-MSDIDDIRYFNRKLYEALRVPLSRSNLSDANMVIGGDGSEITRDELE 399 (521) T ss_pred cccccchhhhhcccccCCCcccceeecccCCC-CChHHHHHHHHHHHHHHhCCccccccCCCCcceeccccchhhHHHHH Confidence 111 1111 24566666655322 22245566777899999999999996433211 11 1222333 Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh--------------ccchhhhhhcCh--HH------HHHHHHHHHh-----CCccC Q lcl|Aclame:pro 303 YASALNRYLRPAISELEYKLSDHI--------------SVNMRPAIDPLG--DN------YLSTISTATR-----WGALA 355 (392) Q Consensus 303 ~~~~l~p~l~~i~~~l~~~l~~~~--------------~~d~~~~~~~~~--~~------~~~~~~~~~~-----~g~~t 355 (392) +..++.-+-..+...|...|-+.+ .-+++..+..|. .+ +..+++.+-+ +..++ T Consensus 400 F~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s 479 (521) T protein:vir:81 400 FSKFIRTRQSQFSEVLRDPLKYNLILKNVITEDDWDREINNIKVVFHRDSYYTEVKDAEILERRIGLIERITPYIGKYFS 479 (521) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEEeecchHHHHHHHHHHHHHHHHHHHhhhhhccccc Confidence 455555555555555544332211 001111111111 11 1122222211 22333 Q ss_pred HHHHHHH-HH-----------------hCCCCCcccccccCC Q lcl|Aclame:pro 356 ENQATFV-LQ-----------------EAGYIPKDLPAPENT 379 (392) Q Consensus 356 ~nE~R~~-l~-----------------~~g~~~~e~~~~~~~ 379 (392) .+=+|+. |. ..|.-++.....++. T Consensus 480 ~dyi~k~ILr~tDeei~~~~k~I~~E~~~~~~~~p~~~~~~f 521 (521) T protein:vir:81 480 NQTVMRDILKYTDDQMDTEKKQIEEEANDPRFKQTPDEIEDF 521 (521) T ss_pred hHHHHHHHhccCHHHHHHHHHHHHHHhhCCCCCCCcccccCC Confidence 3333322 11 112211111111222 No 239 >protein:vir:98265 Length: 524 # NCBI annotation: gp20 portal vertex of the head # Family: family:all:1036 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239198;genbank:gi:66391673;genbank:GeneID:3416367 Probab=44.97 E-value=0.79 Score=21.15 Aligned_cols=382 Identities=8% Similarity=0.064 Sum_probs=146.6 Q ss_pred Cc-chhhhhhc---c---c----ccccccccccccccCcchhhh-----------hhhc----cCCCCcccc-------- Q lcl|Aclame:pro 1 MI-LPILNFIN---Q---T----NDPPEAGSVQSYFPDGNDAQI-----------MESL----LGDNNEWVS-------- 46 (392) Q Consensus 1 m~-Mg~~n~~~---~---~----~~~~~~~~~~~~~~~~~~~~~-----------~~~~----~~~~~~~~~-------- 46 (392) |- |||+|.++ . . ..........+..++..+.+. ...+ .+.....+. T Consensus 1 ~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~y~~~e~~~~~~~eLI~~ 80 (524) T protein:vir:98 1 MNFLGFGNVLSFFKNFAREDEIELEQQLKNDTGSVAPPKNNDGAYEIETDLNNQKYAGVFQQFYSGQDPAIQNKEQLINT 80 (524) T ss_pred CCCcchhhHHHHhhhhhhhhhhhHhhhhcCCcccccCCCCCCCceeecCCCCcceecceeeeeccccccccchHHHHHHH Confidence 32 35555211 1 0 001111111222222222111 0000 000000011 Q ss_pred hhhhhcchHHHHHHHHHHHhhhhC-----ceeeecch--------------hhhhcccCCccCCHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 47 ARAALRNSDLFSIILQLSSDLAIV-----KINAEKKK--------------NQGIIDNPSTNANKHGFWQSMFAQLLLGG 107 (392) Q Consensus 47 ~~~al~~~~v~~~i~~ia~~ia~l-----p~~~~~~~--------------~~~~~~~PN~~~t~~~f~~~~~~~l~l~G 107 (392) -+..+.+|.|..||+-|.+.+.-. |+.+.=.+ -+.++.--|-...+++ ++..|...| T Consensus 81 YR~ma~~pEvd~Av~eIVneaIv~~~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~----~fR~WYVDg 156 (524) T protein:vir:98 81 YRGIMSYPEVENAVSEIIDDAIVNEQGKDIITMDLAKTNFSKAIQDKIVEEFDNVLNIYDFDNMGAR----LFRDWYVDS 156 (524) T ss_pred HHHHhhccchhhHHHhhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhH----HHhhhhhcc Confidence 134456899999999999887433 22221000 0111222233344444 455667899 Q ss_pred CeeEEEecccCCc--eeEEEEeccccceeee-----cCCCc-e------EEEEEEe-cC-----C---cceeeEEEecce Q lcl|Aclame:pro 108 EAFAYRWRNANGA--DMKWEYLRPSQVNTYY-----FEYEN-G------MYYNITF-DD-----P---KIEPILQAPQSD 164 (392) Q Consensus 108 ~a~~~i~r~~~G~--~~~l~~l~~~~v~~~~-----~~~~~-~------~~~~~~~-~~-----~---~~~~~~~~~~~~ 164 (392) ..|..++-+.+.. ..+|..|+|..+..+. +.+++ . -++.|.. .. + ..+..+.++.+- T Consensus 157 Ri~fhkiid~~~~kGI~ELr~lDPr~i~~vr~~~~~~~~~~~~v~~~~~e~f~Y~~~~~~~~~~g~~~~~~~~ikI~~dA 236 (524) T protein:vir:98 157 RIYFHKIMHKDESKGIRELRQLDPRCMELIRESITETLDGGVKVFRGYREFFVYSAPKAGYTYNGQIYQANQKIKIPRSA 236 (524) T ss_pred eeEEEEEEcCCCCcceeeeeeeCCccceeeeeccccccccchhhccceeeeeeeccCCCccccccceecCCCceeechhh Confidence 9999887443322 8899999999996653 11111 1 1111110 00 0 112346788888 Q ss_pred EEEecCCCc-cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH---HHHHHHHHHHhc---- Q lcl|Aclame:pro 165 LIHMKLLSI-DGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD---KDKASRSRSFMK---- 236 (392) Q Consensus 165 vih~~~~~~-~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~---- 236 (392) |.|...--. .+... +|-|..+.+.+....-++....-+=-..+.-+=|.-++=+..+.. +-.+.....+.. T Consensus 237 Ivy~hSGL~d~~~~i-isyLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvY 315 (524) T protein:vir:98 237 IVYAHSGLEDCSNNI-IGYLHRAVKPANQLRLLEDAMVIYRITRAPERRVFYIDVGQMGGNKATQYVNNIAQGLKNRVVY 315 (524) T ss_pred eeeeccCcccCCCCe-eeehhHhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEe Confidence 888753211 11111 344555554444444333332222111111122222222211111 111122122210 Q ss_pred ------cccCCce-eec----------cCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc----cch Q lcl|Aclame:pro 237 ------RSRSGGP-VVL----------DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ----QSS 295 (392) Q Consensus 237 ------~~~~g~~-~vl----------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~----~~~ 295 (392) ..+..+. ..+ +.|.+++.|..... +.-++-..+..+.+..+++||..-|+....+ .++ T Consensus 316 Da~TGevrddrk~msMlEDyWLpRReGgrgTEItTLpggqn-lgem~DV~YF~kkLy~aLnVP~sRl~~~~~~f~~Gr~~ 394 (524) T protein:vir:98 316 DARTGTVKNQQNNLSMTEDYWLMRRDGKAITEVSTLPGGQN-FSDMDDIKWFNRKLYEALRVPLSRMPRDDGGMQIGGGG 394 (524) T ss_pred eccCceeeccccccchhhhhcccccCCCCccceeeccccCC-cChHHHHHHHHHHHHHHhCCCceeccCCCCcccccccc Confidence 0111111 111 24566666665422 2224556677789999999999999643211 111 Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------------ccchhhhhhcCh--HH------HHHHHHHHHh-- Q lcl|Aclame:pro 296 -IQQISGMYASALNRYLRPAISELEYKLSDHI--------------SVNMRPAIDPLG--DN------YLSTISTATR-- 350 (392) Q Consensus 296 -~~~~~~~~~~~l~p~l~~i~~~l~~~l~~~~--------------~~d~~~~~~~~~--~~------~~~~~~~~~~-- 350 (392) ..--+--+..++.-+-..+...|...|-+.+ .-+++..+..|. .+ +..+++.+-+ T Consensus 395 EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~d 474 (524) T protein:vir:98 395 EITRDELKFSKFIRTLQIQFSPVLSDPLKTNLIAKKIITEDEWEENVSKISFVFQQDSYYAEVKDIEILERRLNLMSQVE 474 (524) T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEEeecchHHHHHHHHHHHHHHHHHHHhc Confidence 1222333455555555555555444332211 001111111111 11 1122222211 Q ss_pred ---CCccCHHHHHHHHHhCCCCCcccccc---------cCCCCCCCCCCCCC Q lcl|Aclame:pro 351 ---WGALAENQATFVLQEAGYIPKDLPAP---------ENTNKKTTGQSNEP 390 (392) Q Consensus 351 ---~g~~t~nE~R~~l~~~g~~~~e~~~~---------~~~~~~~~gd~~~p 390 (392) +..++.+=+|+... .+...|+-+. ++.-+.|..+.++- T Consensus 475 pyvGky~s~dyi~k~IL--r~tDeei~~~~k~I~~E~k~~~~~~p~~e~~~f 524 (524) T protein:vir:98 475 GVVGKYVSHKYIMKEIL--RMSDEDIDEQAKLIEEESKEERFKNPEAEEENF 524 (524) T ss_pred cccccccchHHHHHHHh--ccCHHHHHHHHHHHHHHHhCCCCcCCccccccC Confidence 22344443332211 0001111000 01111111111111 No 240 >protein:vir:5665 Length: 511 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899604;genbank:gi:34419591;genbank:GeneID:2546036 Probab=40.22 E-value=0.98 Score=20.63 Aligned_cols=375 Identities=10% Similarity=0.063 Sum_probs=154.5 Q ss_pred chhhhhhccccc-ccccccccccccCcchhhh----------------hhhccCCCCc-----ccc-hhhhhcchHHHHH Q lcl|Aclame:pro 3 LPILNFINQTND-PPEAGSVQSYFPDGNDAQI----------------MESLLGDNNE-----WVS-ARAALRNSDLFSI 59 (392) Q Consensus 3 Mg~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~-----~~~-~~~al~~~~v~~~ 59 (392) +.||........ ........+..++..+.+. ........+. -+. -+..+.+|.|..| T Consensus 1 ~~~w~~~de~~~~~~~~~~~~S~~~p~~~DGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~pEvd~A 80 (511) T protein:vir:56 1 MKFWTKEEEQDIQKIEKNPVRSFSAPDNVDGAKEIHTNLLAPQLGHAIIPSDAQSEGTIPVKELIKSYRALAEYHEVDDA 80 (511) T ss_pred CCCccchhhhhhhhhccCCcccccCCCCCCCceEEecccccceecceeccccccccCccchHHHHHHHHHHhhccchhhH Confidence 666643222111 1111111222222222221 0000011110 011 1344568999999 Q ss_pred HHHHHHhhhhC-----ceeeecchh--------------hhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCc Q lcl|Aclame:pro 60 ILQLSSDLAIV-----KINAEKKKN--------------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGA 120 (392) Q Consensus 60 i~~ia~~ia~l-----p~~~~~~~~--------------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~ 120 (392) |+.|.+.+.-. |+.+.=.+. +.++.--|-...+++ ++..|...|..|..++-+.+.- T Consensus 81 v~eIvne~iv~d~~~~pV~l~ld~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~----~fR~WYVDgRi~fHkiid~k~G 156 (511) T protein:vir:56 81 IQEIVDEAIVYENDKEVVWLNLDNTDFSENIKAKINEEFDRVVSLLQMRKHGYK----WFRKWYVDSRIYFHKILDKDNN 156 (511) T ss_pred HHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhH----HHhhhhhcceEEEEEEeccccc Confidence 99999987544 222210000 111222233344443 4556678899998887665555 Q ss_pred eeEEEEeccccceeeecC-----CC-----c-eEEEEEEecCCc----------ceeeEEEecceEEEecCCCc---ccc Q lcl|Aclame:pro 121 DMKWEYLRPSQVNTYYFE-----YE-----N-GMYYNITFDDPK----------IEPILQAPQSDLIHMKLLSI---DGG 176 (392) Q Consensus 121 ~~~l~~l~~~~v~~~~~~-----~~-----~-~~~~~~~~~~~~----------~~~~~~~~~~~vih~~~~~~---~~~ 176 (392) ..+|..|+|..+..+..- ++ + .-++.|...+.. ....+.++.+.|.|...--. .+. T Consensus 157 I~eLr~lDPr~i~~vr~i~~~~~~~~~v~~~~~ey~~Y~~~~~~~~~~~~~~~~~~~~vkI~~daI~y~hSGL~d~~~~~ 236 (511) T protein:vir:56 157 IIELRPLNPMKMELVREIQKETIDGVEVVKGTLEYYVYKQSDYKMPSWMSATNRAQTSFRIPKDAIVFAHSGLMRGCADD 236 (511) T ss_pred eeehhhcCcccchhhhhhhcccccccccccceeeeeEecCCCcccCcccccccccccceeechhheeeecccceeccCCC Confidence 889999999988775321 11 1 112222111100 12347788888866543211 122 Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCch-----------------------------HHHH Q lcl|Aclame:pro 177 KTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLS-----------------------------DKDK 227 (392) Q Consensus 177 ~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~-----------------------------~~~~ 227 (392) .+.+|-|..+.+.+....-++....-+=-..+.-.=|.-++=+..+. ++.. T Consensus 237 g~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYl~~iM~k~kNklVYDa~TGev~ddrk~ 316 (511) T protein:vir:56 237 PYIIGYLDRAIKPANQLKMLEDALVIYRLARAPERRVFYVDVGNLPTQKAQQYVNGIMQNVKNRVVYDTQTGQVKNTTNA 316 (511) T ss_pred CeeeccchhhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCceeccchhh Confidence 24567677776666655555443322211111111222222111111 1111 Q ss_pred HHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccc--cc----ch-HHHHH Q lcl|Aclame:pro 228 ASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGD--QQ----SS-IQQIS 300 (392) Q Consensus 228 ~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~--~~----~~-~~~~~ 300 (392) -...+.|+-..+.| +.|.+++.|..... +.-++-..+..+.+..+++||..-|+..+. +- ++ ..--+ T Consensus 317 msMlEDyWLpRReG-----grgTEItTLpGgqn-lgem~DV~YF~kKLy~aLnVP~SRl~~e~q~~~f~~Gr~~EItRDE 390 (511) T protein:vir:56 317 MSMLEDYYLPRREG-----SKGTEVSTLPGGQS-LGDIEDVLYFNRKLYKAMRIPTSRAASEDQTGGINFGQGAEITRDE 390 (511) T ss_pred hhhHhhhcccccCC-----CCccceeeccccCC-cChHHHHHHHHHHHHHHhCCCcccccCCCCccccccccchhhhHHH Confidence 12222333232222 24566666665422 223455667778999999999999974321 11 11 12223 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh--------------ccchhhhhhcCh--HH------HHHHHHHHHh-----CCc Q lcl|Aclame:pro 301 GMYASALNRYLRPAISELEYKLSDHI--------------SVNMRPAIDPLG--DN------YLSTISTATR-----WGA 353 (392) Q Consensus 301 ~~~~~~l~p~l~~i~~~l~~~l~~~~--------------~~d~~~~~~~~~--~~------~~~~~~~~~~-----~g~ 353 (392) --+..++.-+-..+...|...|-+.+ .-+++..+..|. .+ +..+++.+-+ +.. T Consensus 391 iKF~KFI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky 470 (511) T protein:vir:56 391 LKFTKFVKRLQTKFETVITDPLKHQLIVNNIITEEEWDANHEKLYVVFNQDSYFEEAKELEILNSRMNAMRDIQDYAGKY 470 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhcchhccc Confidence 33455565555555555544432211 111111111111 11 1122222221 233 Q ss_pred cCHHHHHHHHHhCCCCCcccccc------cCCCC-CCCCCCCC Q lcl|Aclame:pro 354 LAENQATFVLQEAGYIPKDLPAP------ENTNK-KTTGQSNE 389 (392) Q Consensus 354 ~t~nE~R~~l~~~g~~~~e~~~~------~~~~~-~~~gd~~~ 389 (392) ++.+=+++... .+...|+-.. |...| .+.-+++- T Consensus 471 ~S~~yi~k~IL--r~tDeei~~~~k~I~~E~k~~~~~~~e~~f 511 (511) T protein:vir:56 471 YSHKYIQKNIL--RLSDDQITAMQSEIDEEETNPRFQQDDQGF 511 (511) T ss_pred cchHHHHHHHh--ccCHHHHHHHHHHHHHhhcCCCCCCcccCC Confidence 44444433221 1111111110 00000 00000111 No 241 >protein:vir:6596 Length: 521 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891727;genbank:gi:33620636;genbank:GeneID:1725288 Probab=37.52 E-value=1.1 Score=20.33 Aligned_cols=373 Identities=10% Similarity=0.091 Sum_probs=143.1 Q ss_pred Ccchhhhhhcccc-cccccccccccccCcchhh-----------------hhhhccCCCCcc------cc-hhhhhcchH Q lcl|Aclame:pro 1 MILPILNFINQTN-DPPEAGSVQSYFPDGNDAQ-----------------IMESLLGDNNEW------VS-ARAALRNSD 55 (392) Q Consensus 1 m~Mg~~n~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~------~~-~~~al~~~~ 55 (392) =.|.+|-.+.... ...-.....+..++..+.+ +...+.+..+.. +. -+..+.+|. T Consensus 6 ~~~~~~~~~d~~~~~e~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~~~g~~~~~~~~e~~~~~~~eLI~~YR~ma~~pE 85 (521) T protein:vir:65 6 KMLARWADFDNDKYEEQIKDKAESIAAPKNNDGATEVEINDNSPASSWNSLTQQFYSTDQKISTTKQLVNTYRGLMNNHE 85 (521) T ss_pred hhhhhccCchhhHHHhhhccCCCcccCCCCCCCceeecccCCccccccccceeeeccccchhhhHHHHHHHHHHHhhccc Confidence 2233332111100 0000001111111111111 111111111110 11 123456899 Q ss_pred HHHHHHHHHHhhhhCc-----eeeecch--------------hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecc Q lcl|Aclame:pro 56 LFSIILQLSSDLAIVK-----INAEKKK--------------NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRN 116 (392) Q Consensus 56 v~~~i~~ia~~ia~lp-----~~~~~~~--------------~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~ 116 (392) |..||+-|.+.+.-.. +.+.=.+ -+.++.--|-...+++ ++.+|...|..|..++-+ T Consensus 86 vd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~----~fR~WYVDgRi~fhkiid 161 (521) T protein:vir:65 86 VENAVQNIVNDAIVFEEGHEVVSLNLEATGFSESVKERIHEEFKDLLNTIQFDRRGQD----MFRRWYVDSRIFFHKIIG 161 (521) T ss_pred hhhHHHHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhH----HHhhhhhcceeEEEEEEc Confidence 9999999998875432 2221000 0111222233344444 455667899999988743 Q ss_pred --cCCceeEEEEeccccceeeecC-----CCc------eEEEEEEecCC---------cceeeEEEecceEEEecCCCcc Q lcl|Aclame:pro 117 --ANGADMKWEYLRPSQVNTYYFE-----YEN------GMYYNITFDDP---------KIEPILQAPQSDLIHMKLLSID 174 (392) Q Consensus 117 --~~G~~~~l~~l~~~~v~~~~~~-----~~~------~~~~~~~~~~~---------~~~~~~~~~~~~vih~~~~~~~ 174 (392) .+.-..+|..|+|..+..+... .+. ..++.|...+. ..+..+.++.+-|.+. +.+.. T Consensus 162 ~~pk~GI~ELr~lDPr~i~~vr~i~k~~~~~~~v~~~~~e~f~Y~~~~~~~~~~g~~~~~~~~vkI~~dAI~y~-hSGl~ 240 (521) T protein:vir:65 162 KNPKDGIVELRQLDPRNLEYVREIITEDTPEGKIYKATKEYFIYTVGNSSYCAGGQVFSPNSRVKIPRSAITYA-HSGLM 240 (521) T ss_pred CCccccceeeeeeCCcceeeeeeecccccCCcceecceeeeeeeecCCcceeccceeecCCcceeechhheeee-eccce Confidence 3345889999999988876422 111 11222211010 1112344554444333 22222 Q ss_pred ccc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchH---HHHHHHHHHHhc----------ccc Q lcl|Aclame:pro 175 GGK--TGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD---KDKASRSRSFMK----------RSR 239 (392) Q Consensus 175 ~~~--~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~----------~~~ 239 (392) +.. .=+|-|..+.+.+....-++....-+=-..+.-+=|.-++=+..+.. +-.+.....+.. ..+ T Consensus 241 d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev~d 320 (521) T protein:vir:65 241 DCDDKYIIGYLHRAVKPANQLKLLEDAMVVYRITRAPERRVFFIDTGNMNNRKAAQHMNSVAQSFKNRVVYDASTGKLKN 320 (521) T ss_pred eCCCCeeeecchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEeecccccccc Confidence 111 11355555555554444444333222111111122222222211111 111122222211 011 Q ss_pred CCc-eeec----------cCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccccc-----ch-HHHHHHH Q lcl|Aclame:pro 240 SGG-PVVL----------DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ-----SS-IQQISGM 302 (392) Q Consensus 240 ~g~-~~vl----------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~-----~~-~~~~~~~ 302 (392) ..+ ...+ +.|.+++.|..... +.-++-..+..+.+..+++||..-++.++++. ++ ..--+-- T Consensus 321 drk~msMlEDyWLpRReGgrgTEItTLpGgqn-lgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~gr~~EItRDEiK 399 (521) T protein:vir:65 321 QQANLSMTEDYWLQRRDGKAITDVTTLPGASG-MSDIDDIRYFNRKLYEALRVPLSRSNLSDANMVIGGDGSEITRDELE 399 (521) T ss_pred cccccchhhhhcccccCCCCccceeecccCCC-cChHHHHHHHHHHHHHHhCCCceeccCCCCcceeccccchhhHHHHH Confidence 111 1111 24566666655322 22245566777899999999999986543321 11 1222333 Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh--------------ccchhhhhhcCh--HH------HHHHHHHHHh-----CCccC Q lcl|Aclame:pro 303 YASALNRYLRPAISELEYKLSDHI--------------SVNMRPAIDPLG--DN------YLSTISTATR-----WGALA 355 (392) Q Consensus 303 ~~~~l~p~l~~i~~~l~~~l~~~~--------------~~d~~~~~~~~~--~~------~~~~~~~~~~-----~g~~t 355 (392) +..++.-+-..+...|...|-+.+ .-+++..+..|. .+ +..+++.+-+ +..++ T Consensus 400 F~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~S 479 (521) T protein:vir:65 400 FSKFIRTLQSQFSEVLRDPLKYNLILKNVITEDDWDREINNIKVVFHRDSYYTEVKDAEILERRIGLIERITPYIGKYFS 479 (521) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccc Confidence 455555555555555544332211 001111111111 11 1122222211 22334 Q ss_pred HHHHHHH-HH-----------------hCCCCCcccccccCC Q lcl|Aclame:pro 356 ENQATFV-LQ-----------------EAGYIPKDLPAPENT 379 (392) Q Consensus 356 ~nE~R~~-l~-----------------~~g~~~~e~~~~~~~ 379 (392) .+=+|+. |. ..|.-++.-...++. T Consensus 480 ~dyi~k~ILr~tDeei~~~~k~I~~E~~~~~~~~p~~~~~~f 521 (521) T protein:vir:65 480 NQTVMRDILKYTDDQMDTEKKQIEEEANDPRFKQTPDEIEDF 521 (521) T ss_pred hHHHHHHHhccCHHHHHHHHHHHHHhhhCCCCCCCcccccCC Confidence 4433322 11 112221111111222 No 242 >protein:vir:108049 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595296;genbank:gi:161622602;genbank:GeneID:5783768 Probab=35.85 E-value=1.2 Score=20.14 Aligned_cols=378 Identities=11% Similarity=0.114 Sum_probs=146.9 Q ss_pred Cc-----chhhhhhcccccc----cccccccccccCcchhhhh-----------hh-----ccCCCCcc------cc-hh Q lcl|Aclame:pro 1 MI-----LPILNFINQTNDP----PEAGSVQSYFPDGNDAQIM-----------ES-----LLGDNNEW------VS-AR 48 (392) Q Consensus 1 m~-----Mg~~n~~~~~~~~----~~~~~~~~~~~~~~~~~~~-----------~~-----~~~~~~~~------~~-~~ 48 (392) |+ +.||.|+.+.... .......+..++..+.+.. .. +.+..+.. +. -+ T Consensus 1 ~~~~~~~~~lf~f~~~~de~~~~~~~~~~~~S~~~p~~~dGa~~I~~~~~~~~~~~~~q~~y~~~e~~~~~~~eLI~~YR 80 (524) T protein:vir:10 1 MANFNTILSFLKPWANEDEKEYKQQINNNLESVTAPKLDDGAREIETQEQNIPYNALMQQMFGSNEPEVKNTRELIDTYR 80 (524) T ss_pred CCchhhHHHHhhhhhcchhhhhhhhhccCCCccccCCCCCCceeeccCcccccchhhhhhhhhcccchhhhHHHHHHHHH Confidence 21 1222222221110 0001111222222221110 00 00011100 11 13 Q ss_pred hhhcchHHHHHHHHHHHhhhhC-----ceeeecchh--------------hhhcccCCccCCHHHHHHHHHHHHHHhCCe Q lcl|Aclame:pro 49 AALRNSDLFSIILQLSSDLAIV-----KINAEKKKN--------------QGIIDNPSTNANKHGFWQSMFAQLLLGGEA 109 (392) Q Consensus 49 ~al~~~~v~~~i~~ia~~ia~l-----p~~~~~~~~--------------~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a 109 (392) ..+.+|.|..||+.|.+.+.-. |+.+.=.+. +.++.--|-...+++ ++..|...|.. T Consensus 81 ~ma~~pEvd~Av~eIVneaiv~d~~~~pV~l~Ld~~~~s~siK~kI~eeF~~Il~ll~F~~~~~~----~fR~WYVDgRi 156 (524) T protein:vir:10 81 NLMNNYEVDNAVQEIVSDAIVYEDDKEVVALNLDGTDFSQSIKDKILAEFSEVLNLLNFQRKGTD----HFQRWYVDSRI 156 (524) T ss_pred HHhhccchhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhH----HHhhheeeceE Confidence 4456899999999999887543 222110000 111222233334443 45566788999 Q ss_pred eEEEecc---cCCceeEEEEeccccceeee-----cCCCc------eEEEEEEec------C---CcceeeEEEecceEE Q lcl|Aclame:pro 110 FAYRWRN---ANGADMKWEYLRPSQVNTYY-----FEYEN------GMYYNITFD------D---PKIEPILQAPQSDLI 166 (392) Q Consensus 110 ~~~i~r~---~~G~~~~l~~l~~~~v~~~~-----~~~~~------~~~~~~~~~------~---~~~~~~~~~~~~~vi 166 (392) |..++-+ .+.-..+|..|+|..+..+. ...+. ..++.|... + ...+..+.++.+-|. T Consensus 157 ~fHkiid~~~pk~GI~Elr~lDPr~i~~vr~i~~~~~~~~~vi~~~~e~f~Y~~~~~~~~~~~~~~~~~~~ikI~~dAIv 236 (524) T protein:vir:10 157 FFHKIINPKKMKDGVQELRRLDPRQVQYIREIVTRMEDGVKIVDGYREFFVYDTGHESYCADGRIYSAGTKVKIPRAAVV 236 (524) T ss_pred EEEEEeeCCCccccceeeeeeCCccceeeeeecccCcccchhhcchhhheeecCCCcccccCcceecCCcceecchhhee Confidence 9887533 33348899999999997632 11111 111111100 0 122345778888888 Q ss_pred EecCCCcc-ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCc----------------------- Q lcl|Aclame:pro 167 HMKLLSID-GGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLL----------------------- 222 (392) Q Consensus 167 h~~~~~~~-~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~----------------------- 222 (392) |...--.+ +...=+|-|..+.+.+....-++....-+=-..+.-+=|.-++=+..+ T Consensus 237 y~~SGL~d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnlPk~KAeqYl~~im~k~kNKlvYDa 316 (524) T protein:vir:10 237 YAHSGLLDCCGKNIIGYLQRAIKPANQLKLMEDAMVIYRITRAPDRRVFYIDTGNMPSRKAAAQMQHIMNTMKNRVVYDA 316 (524) T ss_pred eeccCcccCCCCceeccchHhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEec Confidence 87532111 111223445555555444444433322221111111112222211111 Q ss_pred ------hHHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc---- Q lcl|Aclame:pro 223 ------SDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ---- 292 (392) Q Consensus 223 ------~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~---- 292 (392) .++..-...+.|+-..+.| +.|.+++.|..... +.-++-..+..+.+..+++||..-|+.++++ T Consensus 317 ~TGev~ddrk~msMlEDyWLpRReG-----grgTEItTLpGgqn-lgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~f~~ 390 (524) T protein:vir:10 317 STGKIKNQQHNMSMTEDYWLQRRDG-----KAVTEVDTMPGATG-MSDMDDVLYFRTALYRALRIPESRIPSESNSGVMF 390 (524) T ss_pred cCCeeccchhhhhhHhhhcccccCC-----CCccceeeccccCC-cChHHHHHHHHHHHHHHhCCCchhccCCCCccccc Confidence 1111122223333333322 24566666665422 2234556677789999999999999643221 Q ss_pred -cch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------------ccchhhhhhcCh--HH------HHHHHHHH Q lcl|Aclame:pro 293 -QSS-IQQISGMYASALNRYLRPAISELEYKLSDHI--------------SVNMRPAIDPLG--DN------YLSTISTA 348 (392) Q Consensus 293 -~~~-~~~~~~~~~~~l~p~l~~i~~~l~~~l~~~~--------------~~d~~~~~~~~~--~~------~~~~~~~~ 348 (392) .++ ..--+--+..++.-+-..+...|...|-+.+ .-+++..+..|. .+ +..+++.+ T Consensus 391 gr~~EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l 470 (524) T protein:vir:10 391 DAGTAITRDELKFAKWIRQLQNKFEEIFLDPLKTNLILKKIITEDEWEREINNIKVTFNRDSYFSEMKDAEIMERRINML 470 (524) T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHH Confidence 111 1222333455555555555555544332211 111111111111 11 11222222 Q ss_pred Hh-----CCccCHHHHHHHHHhCCCCCcccccc---------cCCCCCCCCCCCCC Q lcl|Aclame:pro 349 TR-----WGALAENQATFVLQEAGYIPKDLPAP---------ENTNKKTTGQSNEP 390 (392) Q Consensus 349 ~~-----~g~~t~nE~R~~l~~~g~~~~e~~~~---------~~~~~~~~gd~~~p 390 (392) -+ +..++.+=+|+... .+.-.|+-.. +++-+.+..+.++- T Consensus 471 ~~~dpyvGky~s~~yi~k~IL--r~tDeei~~~~k~I~~E~k~~~~~~~~~~~~~f 524 (524) T protein:vir:10 471 TMAEPFIGKYISHQTAMKDFL--QMTDEEINQEAKQIEEESKEARFQNPDEEEEDF 524 (524) T ss_pred HHhhhhhcccchhHHHHHHHh--ccCHHHHHHHHHHHHHHhhcCCCCCCChhhhcC Confidence 11 22333333332211 0001111000 01111111111111 No 243 >protein:vir:94572 Length: 535 # NCBI annotation: Head-to-tail joining protein # Family: family:all:481 # MgeID: mge:1516 # MgeName: Berlin # Cross-refs: genbank:acc:YP_919010;genbank:gi:119637774;genbank:GeneID:5179332 Probab=35.12 E-value=1.2 Score=20.05 Aligned_cols=340 Identities=11% Similarity=0.025 Sum_probs=120.8 Q ss_pred Ccchhhhhhcccccccccccccccc---cCcchhhhhhhccCCCCc---ccchh---hhhcchHHHHHHHHHHHhhhhCc Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYF---PDGNDAQIMESLLGDNNE---WVSAR---AALRNSDLFSIILQLSSDLAIVK 71 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~---~al~~~~v~~~i~~ia~~ia~lp 71 (392) ++..+ .+-...........+.+.- .....+.+...+++.... .++.. .....+...+-++..=..+ T Consensus 41 lP~~~-~~~~~~~~~~~~~~~dst~~~a~~~Laa~l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~v---- 115 (535) T protein:vir:94 41 IPSLF-PKDSDNASTDYTTPWQAVGARGLNNLASKLMLALFPMQTWMKLTISEFEAKQLVAQPAELAKVEEGLSMV---- 115 (535) T ss_pred ccccC-CCCCCccccccCCcccccHHHHHHHHHHHHHhhhcCCCCccccccChhhhhccccchhHHHHHHHHHHHH---- Confidence 22211 1111111110000011000 000000011111110000 00000 0001111111111111111 Q ss_pred eeeecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEeccc-CCceeEEEEeccccceeeecCCCc--------- Q lcl|Aclame:pro 72 INAEKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNA-NGADMKWEYLRPSQVNTYYFEYEN--------- 141 (392) Q Consensus 72 ~~~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~-~G~~~~l~~l~~~~v~~~~~~~~~--------- 141 (392) .+.....+.+-|.+.. +..+..+|..+|++.+++..+. .+.....+|+. .+-+..|..|. T Consensus 116 ----e~~~~~~~~~snf~~~----~~~~~~~L~~~G~a~l~~~~~~~~~~~f~~~pl~--~y~v~~d~~G~vd~i~r~~~ 185 (535) T protein:vir:94 116 ----ERILMNYIESNSYRVT----LFETLKQLVVAGNALLYIPEPEGTYNPMKLYRLS--SYVVQRDAFGTVLQIVTLDK 185 (535) T ss_pred ----HHHHHHHHHhcCcHHH----HHHHHHHHHhhCcEeEeeccCcCcccceEEEEcC--eEEEeeCCCCCeEEEEeeee Confidence 0001111222332222 3345566777888888875432 22223333332 22222222211 Q ss_pred ---------------------------------------eEEEEEEecCCcc-e--eeEEEecceEEEecCCCccccccC Q lcl|Aclame:pro 142 ---------------------------------------GMYYNITFDDPKI-E--PILQAPQSDLIHMKLLSIDGGKTG 179 (392) Q Consensus 142 ---------------------------------------~~~~~~~~~~~~~-~--~~~~~~~~~vih~~~~~~~~~~~G 179 (392) ....++..++... + ....+....++..|....+|-.|| T Consensus 186 ~~~~~l~~~~~~~~~~~~~~~~~~~v~v~~~v~~~~~~~~~~~~~e~~g~~~~~~~~~~g~~~~P~~~~Rw~~~~ge~YG 265 (535) T protein:vir:94 186 TAYAALPEDVRNSMDSSQEHKGDEMIDVYTHIYLDEESGEYLKYEEIDGVEVEGTDASYPVDACPYIPVRMVRIDGESYG 265 (535) T ss_pred ccHHHhhHHHHHHHHhccccCCCceeEEEEEEEeeCCCCcEEEEEEecCeeeccccccCccccCCceeeeeeecCCCccc Confidence 1111111111000 0 011233445566666667777899 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCce-eeccCCceEEeccCC Q lcl|Aclame:pro 180 ISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGP-VVLDDLEEFTALEIK 258 (392) Q Consensus 180 ~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~vl~~g~~~~~l~~~ 258 (392) .||+..+...+...+.+.+.......-...|..++.-++. ..... .....+ |.+ .-..++....++... T Consensus 266 rgp~~~~l~D~k~L~~l~~~~l~~~~~a~~~~~lv~p~g~-~~~~~--------~~~~~~-g~~v~g~~~~v~~~~~~~~ 335 (535) T protein:vir:94 266 RSYCEEYLGDLRSLENLQEAIVKMSMISAKVIGLVNPAGI-TQVRR--------LTKAQT-GDFVSGRPEDISFLQLEKA 335 (535) T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccc-cchhh--------cccCCC-ceeecCCcccceeeecccc Confidence 9999999999998888877776666665555444332221 11111 111111 111 112344455555544 Q ss_pred hhhHHHHHHHHHHHHHHHHHhcccHHHcCCccc--ccchH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hcc-chhhh Q lcl|Aclame:pro 259 SNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGD--QQSSI-QQISGMYASALNRYLRPAISELEYKLSDH-ISV-NMRPA 333 (392) Q Consensus 259 ~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~--~~~~~-~~~~~~~~~~l~p~l~~i~~~l~~~l~~~-~~~-d~~~~ 333 (392) +.-.-..+..+..+.+|-.+|=+.. +...+. -|..+ ..........|.|.+..+.++|-.-|... +.. .-... T Consensus 336 ~~~~~~~~~i~~~~~rI~~af~~~~--~~~~d~~rvTAtEV~~r~~E~~~~LGpv~~rl~~ElL~Pli~r~~~il~r~g~ 413 (535) T protein:vir:94 336 ADFSVARAVSEQIEGRLSYAFMLNS--AVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPMVRVLLKQLQATNQ 413 (535) T ss_pred cchhHHHHHHHHHHHHHHHHHhHhh--hccCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhCCC Confidence 3323335666777788888884332 211111 12222 22334455667777777777765433211 100 00000 Q ss_pred hhcChHHHHHHHHHHHhCCccCHH-------HHHHHHHhCCCCCcccccccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 334 IDPLGDNYLSTISTATRWGALAEN-------QATFVLQEAGYIPKDLPAPENTNKKTTGQSNEPVP 392 (392) Q Consensus 334 ~~~~~~~~~~~~~~~~~~g~~t~n-------E~R~~l~~~g~~~~e~~~~~~~~~~~~gd~~~p~p 392 (392) +..-+.+. ++..+.|+= ++-.++.. ...+ .+-.| T Consensus 414 lP~~p~~~-------v~~~~vs~la~l~r~~~~~~l~~~-------------~~~l-----aq~~P 454 (535) T protein:vir:94 414 IPELPKEA-------VEPTISTGMEALGRGQDLDKLERC-------------IAAW-----SALAP 454 (535) T ss_pred CCCCChhh-------ccceEeehHHHHHHHHHHHHHHHH-------------HHHH-----HhhCh Confidence 10001110 111111110 11011100 0001 11225 No 244 >protein:vir:95149 Length: 501 # NCBI annotation: hypothetical protein ORF007 # Family: family:all:584 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293414;genbank:gi:148912835;genbank:GeneID:5228224 Probab=34.11 E-value=1.3 Score=19.94 Aligned_cols=370 Identities=12% Similarity=0.065 Sum_probs=144.2 Q ss_pred Ccc-hh-----------hhhhccccc----cc-ccccccccccCcchhhhhhhccCCCCcccch--hhhhcchHHHHHHH Q lcl|Aclame:pro 1 MIL-PI-----------LNFINQTND----PP-EAGSVQSYFPDGNDAQIMESLLGDNNEWVSA--RAALRNSDLFSIIL 61 (392) Q Consensus 1 m~M-g~-----------~n~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~al~~~~v~~~i~ 61 (392) |+- .. |.+++-.-. -. ....+-++.. .... ...+...+.. ..|.-.+++.+.++ T Consensus 1 m~~V~~~hp~y~~~~~~W~~ird~~~G~~~~r~~g~~YLP~~~-~e~~------~~e~~~~Y~~rl~rA~~~n~~~~t~~ 73 (501) T protein:vir:95 1 MPNVSFIRPELGKLLPLYYLIRDAIAGEPTVKGARTTYLPMPN-AEDQ------SKENKARYEAYLKRAVFYNVARRTLF 73 (501) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcChHHHHhcccccCcCCC-CCCC------cccchHHHHHHhhccccCchHHHHHH Confidence 220 00 000100000 00 0000000000 0000 0000000000 01112234455555 Q ss_pred HHHHhhhhCceeee-cchhhhhcccCC-ccCCHHHHHHHHHHHHHHhCCeeEEEecccCCc---------------eeEE Q lcl|Aclame:pro 62 QLSSDLAIVKINAE-KKKNQGIIDNPS-TNANKHGFWQSMFAQLLLGGEAFAYRWRNANGA---------------DMKW 124 (392) Q Consensus 62 ~ia~~ia~lp~~~~-~~~~~~~~~~PN-~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~---------------~~~l 124 (392) .+...+-+-|..+. ......++..-. ...+-.+|.+.++...+.+|-+++++.....+. |. + T Consensus 74 ~l~G~vf~k~p~~~~p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~t~a~~~~~~~rPy-~ 152 (501) T protein:vir:95 74 GLVGQVFMRDPVVKVPALLNPLVANATGSGINLTQLAKRAVSLNLAYSRAGLLVDYPTTEAEGGASIADLEAGRIRPT-L 152 (501) T ss_pred HHhhhhhcCCcceeCcHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeecCCCCcccccHHHHHhccCCcE-E Confidence 55555544444442 111122222222 335888999999999999999999997543321 11 3 Q ss_pred EEeccccceee----------------------ecC-CCceE----------------EEEEEecCCcce---------- Q lcl|Aclame:pro 125 EYLRPSQVNTY----------------------YFE-YENGM----------------YYNITFDDPKIE---------- 155 (392) Q Consensus 125 ~~l~~~~v~~~----------------------~~~-~~~~~----------------~~~~~~~~~~~~---------- 155 (392) ..+.|..|-=+ .++ ++... +..+.....+.. T Consensus 153 ~~~~~~~IinW~~~~v~g~~~l~~v~l~E~~~~~d~~f~~~~~~q~RvL~~~~~g~~~~~v~r~~~~~~~~~~~~~~~~~ 232 (501) T protein:vir:95 153 YVYSPTEIINWRTTDRGAEEVLSLVVLFETWCAADDGFEMKTSGQFRVLRLDEEGYYVHEIWREPQPTKADGSKIPKGNY 232 (501) T ss_pred EEecHhhhcCcceeccCCceeeeEEEEEEEEeecCCCcccceeEEEEEEeeCCCceEEEEEEEecCCcccCcceecCCcc Confidence 33333222110 000 01000 000110000000 Q ss_pred ----ee-------EEEecceEEEecCCCccccccCCCHHHHHHHH-HHHHHHHHHHHHHHHHccCCcceEEeeCCCCCch Q lcl|Aclame:pro 156 ----PI-------LQAPQSDLIHMKLLSIDGGKTGISPLYSLRRE-SKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLS 223 (392) Q Consensus 156 ----~~-------~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~-i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~ 223 (392) .. ..+..=.++++ +....++..|.+|+..++.. +........ ....+...+.|-.+++--.....+ T Consensus 233 ~~~~~~~~~~~g~~~l~~IPfv~~-~~~~~~~~~~~pPLl~lA~lni~hy~~ssd-~~~~l~~~~~P~l~i~G~~~~~~~ 310 (501) T protein:vir:95 233 QQYVVYKPTDAQGKRLTEIPFMFI-GSENNDSNPDNPNFYDLASLNMAHYRNSAD-YEESCYIVGQPTPVLIGLTEEWVT 310 (501) T ss_pred cccceeeeeccCCCcCCeeeEEEE-ecCCCCCCCCccchHHHHHHHHHHHhhhhH-HHHHHHHcccceeeeeCCcccccc Confidence 00 00000011111 12233455677888777643 333333233 333445566676666532111000 Q ss_pred HHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccc-ccchHHHHH-H Q lcl|Aclame:pro 224 DKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGD-QQSSIQQIS-G 301 (392) Q Consensus 224 ~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~-~~~~~~~~~-~ 301 (392) . .. ...-..|+ ...+.++.|.++.=+..++.-+. .+.++....++.. .| ..++..... .+......+ . T Consensus 311 ~-~~--~~~i~~G~---~~~~~lP~~~~~~~ie~~~~~i~-~~~l~~l~~~m~~-~G--a~ll~~~~~~~Ta~~~~~~~~ 380 (501) T protein:vir:95 311 N-VL--KGSVNFGS---RGGIPLPVGADAKLLQASENTML-KEAMDTKERQMVA-LG--AKLVEQKEVQRTATEAELEAA 380 (501) T ss_pred c-CC--CCceeecc---cccccCCCCCceeEEecChhhHH-HHHHHHHHHHHHH-HH--HhhccCCccchhHHHHHHHHH Confidence 0 00 00111232 23567776655544444443333 2333333333322 23 234422211 111111222 2 Q ss_pred HHHHHHHHHHHHHHHHHHHHhh---hhh-------ccchhhhhh--cChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCC Q lcl|Aclame:pro 302 MYASALNRYLRPAISELEYKLS---DHI-------SVNMRPAID--PLGDNYLSTISTATRWGALAENQATFVLQEAGYI 369 (392) Q Consensus 302 ~~~~~l~p~l~~i~~~l~~~l~---~~~-------~~d~~~~~~--~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~ 369 (392) --.+.|.-+...+++.+++.|- ..+ .+.+...+. .........+-.++.+|.++....++.|.+.|++ T Consensus 381 ~~~S~L~~~a~~le~al~~~l~~~a~w~g~~~~~~~v~i~~df~~~~~~~~~~~al~~~~~~G~is~~t~~~~L~~~~v~ 460 (501) T protein:vir:95 381 SEGSTLSSATKNVSAAFEWALKWAARWVGQADSGVKFELNTDFDIARMTPDERRSLVEEWQKGAITFEEMRTGLRKAGVA 460 (501) T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEecccccccCCHHHHHHHHHHHhCCCCcHHHHHHHHHhCCCC Confidence 2345677788888888887662 111 222222221 1123345667788899999999999999888877 Q ss_pred Cccccc-----------------ccCCC-CCCCCCC--CCC Q lcl|Aclame:pro 370 PKDLPA-----------------PENTN-KKTTGQS--NEP 390 (392) Q Consensus 370 ~~e~~~-----------------~~~~~-~~~~gd~--~~p 390 (392) +.+.-. +.+.+ .-+||+. |.. T Consensus 461 ~~~~~~e~e~i~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 501 (501) T protein:vir:95 461 TEDDSKAKEKIAKDTAEAMALATPANVPGDGSGGDNVGNSE 501 (501) T ss_pred ChhHHHHHHHHHhhhcCcccccccCCCCCCCcccccccCCC Confidence 532110 00111 1122222 111 No 245 >protein:vir:8883 Length: 543 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:161 # MgeName: gh-1 # Cross-refs: genbank:acc:NP_813772;genbank:gi:29366727;genbank:GeneID:1258836 Probab=33.11 E-value=1.4 Score=19.82 Aligned_cols=339 Identities=14% Similarity=0.024 Sum_probs=127.1 Q ss_pred Ccchhhhhhcccccccccccccccc---cCcchhhhhhhccCCCCc---ccchhhh-------hcchHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYF---PDGNDAQIMESLLGDNNE---WVSARAA-------LRNSDLFSIILQLSSDL 67 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~a-------l~~~~v~~~i~~ia~~i 67 (392) ++..+ ..-...........+.+.. .....+.+...+++.... .++.... .....|..-.+.+.+.+ T Consensus 40 lP~~~-~~~~~~~~~~~~~~~dst~~~a~~~Laa~l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~ 118 (543) T protein:vir:88 40 IPSLF-PKDSDNSSTDYTTPWQAVGARGLNNLSAKVMLALFPLQSWMKLKVSEWQAKQLVSDPSQLAVVEQGLGMVERIL 118 (543) T ss_pred ccccC-CCCCCcccccccccccchHHHHHHHHHHHHHHhhcCCCcccccccChHHHhcccCChhhHHHHHHHHHHHHHHH Confidence 44321 1000000000000000000 000000111111111000 0111110 00111222222211111 Q ss_pred hhCceeeecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCC----ceeEEEEeccccceeeecCCCc-- Q lcl|Aclame:pro 68 AIVKINAEKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANG----ADMKWEYLRPSQVNTYYFEYEN-- 141 (392) Q Consensus 68 a~lp~~~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G----~~~~l~~l~~~~v~~~~~~~~~-- 141 (392) ...+.+=|.+ .=+..+..+|..+|++.+++..+... .+...+|+... .+..+..|. T Consensus 119 ------------~~~~~~snf~----~~~~~~~~~L~~~G~a~ly~~~~~~~~~~~~~~~~~pl~~y--~v~~d~~G~v~ 180 (543) T protein:vir:88 119 ------------MSYMEANSYR----VTLFELIRQLALAGTALIYLPPPDASSNSYNPMKLYTLHNH--VVQRDAFGNVL 180 (543) T ss_pred ------------HHHHHhcCcH----HHHHHHHHHHHhhCceeeeeccCccccceecceEEeEcceE--EEeeCCCCCee Confidence 1122233322 22344566677889998887644321 12333444222 121111111 Q ss_pred --------------------------------eEEEEEEec--C-Cc-------ce-------eeEEEecceEEEecCCC Q lcl|Aclame:pro 142 --------------------------------GMYYNITFD--D-PK-------IE-------PILQAPQSDLIHMKLLS 172 (392) Q Consensus 142 --------------------------------~~~~~~~~~--~-~~-------~~-------~~~~~~~~~vih~~~~~ 172 (392) ..++...+. + .. .+ ....+....++..|... T Consensus 181 ~i~r~~~~~~~~l~~~~~~~v~~~~~~~p~~~~~v~~~V~pr~~~~~~~~~~~~~~~~v~~~~~~~~~~e~P~i~~Rw~~ 260 (543) T protein:vir:88 181 QIVTLDKVAYAALPEDVRNSLSGGQEYKPEQELEVYTHIYIDDESGDFLSYQEIEGVEVDGSDGQYPQDALPWIAVRWTK 260 (543) T ss_pred eeeeeeeccHHHHhHHhhHHHHHHhhcCCccceEEEEEEEeecCCCcccccccccCeeeecCCCccccccCCceeeeeee Confidence 111111110 0 00 00 01112334556666666 Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceee--ccCCc Q lcl|Aclame:pro 173 IDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVV--LDDLE 250 (392) Q Consensus 173 ~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v--l~~g~ 250 (392) .+|-.||.||+..+...+...+.+.+...........|..++..++.....+ . ..+.. +.++ ..++. T Consensus 261 ~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~pp~~v~~~g~~~~~~-~-------~~~~~---g~~v~g~~~~v 329 (543) T protein:vir:88 261 RDGEHYGRSHVEEYLGDLNSLESLNEAMIKFAMISSKVVGLVNPNGITQVRR-L-------VKAQT---GDFVAGRKADI 329 (543) T ss_pred cCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeccccccchhh-c-------ccCCC---ceeecCCCCcc Confidence 7777899999999999999999998888888888888876654332221111 1 01111 1122 23444 Q ss_pred eEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hcc Q lcl|Aclame:pro 251 EFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSI-QQISGMYASALNRYLRPAISELEYKLSDH-ISV 328 (392) Q Consensus 251 ~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~-~~~~~~~~~~l~p~l~~i~~~l~~~l~~~-~~~ 328 (392) ...++...++-.-..+..+..+.+|-.+|-+.....-....-|..+ ..........|.|.+..+.++|-.-|... +.+ T Consensus 330 ~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~~~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~i 409 (543) T protein:vir:88 330 EFLQLEKTADFTVAKSVADAIEARLSYVFMLNSAVQRSGERVTAEEIRYVASELEDTLGGVYSILSQELQLPIVRVLLNQ 409 (543) T ss_pred eeeecccccchhHHHHHHHHHHHHHHHHHhhhhhccCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH Confidence 5555554433333456667778888888866532111111112222 22334455667777777777775433211 100 Q ss_pred c-hhhhhhcChHHHHHHHHHHHhCCccCH------HHHHHHHHhCCCCCcccccccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 329 N-MRPAIDPLGDNYLSTISTATRWGALAE------NQATFVLQEAGYIPKDLPAPENTNKKTTGQSNEPVP 392 (392) Q Consensus 329 d-~~~~~~~~~~~~~~~~~~~~~~g~~t~------nE~R~~l~~~g~~~~e~~~~~~~~~~~~gd~~~p~p 392 (392) - -...+-.-+.+ .++..+.|. +...+.+. ....-...+ + .| T Consensus 410 l~r~g~lP~~p~~-------~v~~~~vs~l~~l~r~~~~~~l~---------~~~~~v~~~--~-----~p 457 (543) T protein:vir:88 410 LQATQQIPNLPQE-------AVEPTVTTGAEALGRGQDLDKLT---------QFLNAVATV--S-----QL 457 (543) T ss_pred HHhcCCCCCCchh-------ceeeeEEecHHHHHHHHHHHHHH---------HHHHHHHhc--c-----ch Confidence 0 00000000000 011111110 00000000 000001111 1 15 No 246 >protein:vir:103177 Length: 533 # NCBI annotation: gp131 # Family: family:all:1036 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717798;genbank:gi:113200635;genbank:GeneID:4239186 Probab=31.86 E-value=1.5 Score=19.67 Aligned_cols=377 Identities=13% Similarity=0.116 Sum_probs=147.7 Q ss_pred Ccchhhhhh-cccccccccccccccccCcchhhhhhhccC-CCCcc-------------cc-hhhhhcchHHHHHHHHHH Q lcl|Aclame:pro 1 MILPILNFI-NQTNDPPEAGSVQSYFPDGNDAQIMESLLG-DNNEW-------------VS-ARAALRNSDLFSIILQLS 64 (392) Q Consensus 1 m~Mg~~n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------------~~-~~~al~~~~v~~~i~~ia 64 (392) |. .||.|- ++....++.. +..++..+.+...-..+ ..+.+ |. -+..+.+|.|..||+-|. T Consensus 1 m~-~lfg~~i~~~~~~~~~~---s~~~~~~~dg~~~i~~~~~~~~~~~~e~~~~~~~eLI~~YR~ma~~pEvd~Av~eIV 76 (533) T protein:vir:10 1 MS-QLFGFSLERAKKAPKGP---SFVQKDNLDGSQPVSGGGYYGYTVDFDGQVRNEYQLISRYREMVLQPECDSAVDDIV 76 (533) T ss_pred Cc-cccccccccccccccCC---CCCCCCcccccceeecccccceeeecccccchHHHHHHHHHHHhhccchhhHHHHhh Confidence 21 233332 2222222222 22222221111111111 11111 11 134456899999999999 Q ss_pred HhhhhCc-----eeeecch--------------hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecc---cCCcee Q lcl|Aclame:pro 65 SDLAIVK-----INAEKKK--------------NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRN---ANGADM 122 (392) Q Consensus 65 ~~ia~lp-----~~~~~~~--------------~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~---~~G~~~ 122 (392) +.+.-.. +.+.=.. -+.++.--|-...+++ ++..|...|..|..++-+ .+.-.. T Consensus 77 neaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll~F~~~~~e----~fR~WYVDgRi~fHkiid~~~pk~GI~ 152 (533) T protein:vir:10 77 NETICGNFDDVPVSVELSNLKVSDKIKKLIREEFGEILRLLDFENRSYE----IFRRWYVDGRLFYHKVIDPDNPQGGLI 152 (533) T ss_pred cceeeecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhH----HHhhhhhcceEEEEEEecCCCccccce Confidence 8875442 2221000 0111222333344444 455667889999887543 334588 Q ss_pred EEEEeccccceeeecC-----CCc-------------eEEEEEEec--CCcceeeEEEecceEEEecCCCcccccc--CC Q lcl|Aclame:pro 123 KWEYLRPSQVNTYYFE-----YEN-------------GMYYNITFD--DPKIEPILQAPQSDLIHMKLLSIDGGKT--GI 180 (392) Q Consensus 123 ~l~~l~~~~v~~~~~~-----~~~-------------~~~~~~~~~--~~~~~~~~~~~~~~vih~~~~~~~~~~~--G~ 180 (392) +|..|+|..++.+... ++. .-|+.|... ....+..+.++.+-| ++-+.+..+... =+ T Consensus 153 ELr~lDPr~i~~vr~i~~~~~~~~~~~~~~~~v~~~~~eyf~Ynp~g~~~~~~~~vkI~~dAI-~y~hSGl~d~~~~~i~ 231 (533) T protein:vir:10 153 ELRYIDPRKIRKINETEQKRPEQLRGLPLNQQLSPKSAEYFLYDPKGLKNSTTQGLKIAPDSI-CYVHSGIMDLNKNMTL 231 (533) T ss_pred eeeeccccceeeeeeeeccCCCccceeecchhhhccceeeeeeccccccccCCCceecchhhe-eeeeccceeCCCCcee Confidence 9999999998884321 111 011111100 001123355666444 443332222111 13 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCch-----------------------------HHHHHHHH Q lcl|Aclame:pro 181 SPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLS-----------------------------DKDKASRS 231 (392) Q Consensus 181 s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~-----------------------------~~~~~~~~ 231 (392) |-|..+.+.+....-++....-+=-..+.-+=|.-++=+.... ++..-... T Consensus 232 syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev~ddrk~msMl 311 (533) T protein:vir:10 232 SHLHKAIKAVNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKNKAEQYLREVMGRYRNKLVYDANTGEIKDDKKFMSML 311 (533) T ss_pred ccchHhHHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhccceEEEeccCceecccchhhhhH Confidence 4455555544444433333222211111111222222111111 11111222 Q ss_pred HHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccccc---ch-HHHHHHHHHHHH Q lcl|Aclame:pro 232 RSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ---SS-IQQISGMYASAL 307 (392) Q Consensus 232 ~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~---~~-~~~~~~~~~~~l 307 (392) +.|+-..+.| +.|.+++.|..... +.-++-..+..+.+..+++||..-|+..+..+ ++ ..--+--+..|+ T Consensus 312 EDyWLPRReG-----grgTEItTLpGgqn-Lgem~DV~YF~kKLY~aLnVP~SRl~~e~~f~~Gr~~EItRDEiKF~KFI 385 (533) T protein:vir:10 312 EDFWLPRREG-----GRGTEITTLPGGQN-LGELEDVKYFQKKLYKSLNVPGSRLETETTFNVGRAAEITRDEVKFQKFV 385 (533) T ss_pred hhhcccccCC-----CCccceeeccccCC-cChHHHHHHHHHHHHHHhCCCccccCCCCcccccccchhhHHHHHHHHHH Confidence 2222222222 24566666665422 22345566777899999999999997543321 11 122233345555 Q ss_pred HHHHHHHHHHHHHHhhhhh--------------ccchhhhhhcCh--HH------HHHHHHHHHh-----CCccCHH--- Q lcl|Aclame:pro 308 NRYLRPAISELEYKLSDHI--------------SVNMRPAIDPLG--DN------YLSTISTATR-----WGALAEN--- 357 (392) Q Consensus 308 ~p~l~~i~~~l~~~l~~~~--------------~~d~~~~~~~~~--~~------~~~~~~~~~~-----~g~~t~n--- 357 (392) .-+-..+...|...|-+.+ .-+++..+..|. .+ +..+++.+-+ +..++.+ T Consensus 386 ~RLR~rFs~lF~~~Lk~qLiLKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~ 465 (533) T protein:vir:10 386 ARLRKRFSELFTDLLKTQLVLKGVISIEEWDQMKEHIQYDYIADNYFAELKEIEIRNERMNQVATMDPFVGKYFSVEYMR 465 (533) T ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEeeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHH Confidence 5555555555544332211 111111111111 11 1112222211 2222332 Q ss_pred ---------HHHHH---H---HhCCCCCccccccc-----CCCCCCCCCCCC-----CCC Q lcl|Aclame:pro 358 ---------QATFV---L---QEAGYIPKDLPAPE-----NTNKKTTGQSNE-----PVP 392 (392) Q Consensus 358 ---------E~R~~---l---~~~g~~~~e~~~~~-----~~~~~~~gd~~~-----p~p 392 (392) |+-+. + ...|.-++..-..+ ..|...|..+.+ |.| T Consensus 466 k~ILr~tDeei~~~~kqI~~E~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (533) T protein:vir:10 466 RQVLKQTDVEMKEIDKQIESEMESGIIADPAAEMDPAMAAGDPDAGGAPAEEVAPEGPDP 525 (533) T ss_pred HHHhccCHHHHHHHHHHHHHHHhCCCCCCCcchhhHHhcCCCCCcCCcccccCCCCCCCc Confidence 22221 1 12443322111111 122222322222 333 No 247 >protein:vir:95014 Length: 491 # NCBI annotation: structural protein # Family: family:all:584 # MgeID: mge:1547 # MgeName: KS7 # Cross-refs: genbank:acc:YP_224035;genbank:gi:62327322;genbank:GeneID:5176842 Probab=31.79 E-value=1.5 Score=19.66 Aligned_cols=372 Identities=9% Similarity=-0.036 Sum_probs=150.4 Q ss_pred Cc---------------------chhh--hhhcccccccccccccccccCcchhhhhhhccCCCCcccchhhhhcchHHH Q lcl|Aclame:pro 1 MI---------------------LPIL--NFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLF 57 (392) Q Consensus 1 m~---------------------Mg~~--n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~ 57 (392) |+ .+-+ +....-.....+..+-.+-+......-+... -..|.-.+.+. T Consensus 1 ~~~~~~~~~~V~~~hp~y~a~~~~W~~ird~~~G~~~~~~r~~yl~~~~~~~~e~~Y~~r---------l~rA~~~n~~~ 71 (491) T protein:vir:95 1 MLTANGQGSGVKTKHREWLHYAPKWQKVRHALAGDLVGYLRNVGLNEPDKAYGEARQAEY---------EAGGIVYNFTR 71 (491) T ss_pred CcccCCccCCCCccCHHHHHHHHHHHHHHHHhcCcchhhcccCCCcCCCCCCCHHHHHHH---------HhcccCCChHH Confidence 11 1110 1111100000000000000000000000000 01122234566 Q ss_pred HHHHHHHHhhhhCceeeec-chhhhhcccCC-ccCCHHHHHHHHHHHHHHhCCeeEEEecccCCc------------eeE Q lcl|Aclame:pro 58 SIILQLSSDLAIVKINAEK-KKNQGIIDNPS-TNANKHGFWQSMFAQLLLGGEAFAYRWRNANGA------------DMK 123 (392) Q Consensus 58 ~~i~~ia~~ia~lp~~~~~-~~~~~~~~~PN-~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~------------~~~ 123 (392) ..++.++..+-+-|..+-- .....++..-. ...+-.+|.+.++...+.+|-+++++..+..+- |. T Consensus 72 ~tl~~l~G~vfrk~p~~~~p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~T~Ade~~~~~rPy- 150 (491) T protein:vir:95 72 RTLSGMVGSVMRKEPEINIPKELEYLLKNADGSGVGLIQHAQDTLMEIDSVGRGGLLVDAPETAAATAAEQNAGLLNPT- 150 (491) T ss_pred HHHHHHhchhhcCCceeeccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCeEEEEEecCCCcccCHHHHHHhcCCcE- Confidence 7777777777776765521 11222333222 346888999999999999999999998654431 21 Q ss_pred EEEeccccceee-----------------e--------cCCCceEEEEEE---e------------cCCcce---eeE-- Q lcl|Aclame:pro 124 WEYLRPSQVNTY-----------------Y--------FEYENGMYYNIT---F------------DDPKIE---PIL-- 158 (392) Q Consensus 124 l~~l~~~~v~~~-----------------~--------~~~~~~~~~~~~---~------------~~~~~~---~~~-- 158 (392) +..+.|..|-=+ . +.++......|. . .+..++ ... T Consensus 151 ~~~~~~~~IinW~~~~v~g~~~L~~v~l~E~~~~~d~~~~f~~~~~~qyRvL~l~~~g~~~~~v~r~~~~g~~~~~~~~~ 230 (491) T protein:vir:95 151 IAFYTTENIVNWRLTRVGSVNRVTMVVLRETWEYHEPGNEFETKYGEQYRVLDIDTDGNYRQRLFRFDAEGGAQEEVVEI 230 (491) T ss_pred EEEechhhhcCceeeeeCCceeeeEEEEEEeEEeecCCCCcccceEEEEEEEeecCCCceEEEEEEEcCCCcceeeeeee Confidence 333333322110 0 011111000000 0 000000 000 Q ss_pred -------EEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHH Q lcl|Aclame:pro 159 -------QAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRS 231 (392) Q Consensus 159 -------~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~ 231 (392) .+..=.++.+- ....++..|.+|+..++..-...-....-....+...+.|-.++.--.....+....-... T Consensus 231 ~~~~g~~~l~~IPfv~~~-~~~~~~~~~~pPLl~LA~lni~Hy~~ssd~~~~l~~~~~P~l~~~G~d~~~~~~~~~~~~~ 309 (491) T protein:vir:95 231 YPDLGESLRGVIPFTFIG-ATNNDATIDDAPLLPLAELNIGHYRNSADNEESSFVVGQPTLFIYPGDNLTPQSFKEANPN 309 (491) T ss_pred eecCCCcccCeeEEEEEe-cCCCCCCCCcCchHHHHHHHHHHhhhhhHHHHHHHHcccceeeeecCcccCcchhhccCcc Confidence 00000111111 1233456688888877654333333333344455566677776653221111111100001 Q ss_pred HHHhccccCCceeeccCCceEEeccCChhhHH--HHHHHHHHHHHHHHHhcccHHHcCCcccccchHHHH-HHHHHHHHH Q lcl|Aclame:pro 232 RSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQ--LLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQI-SGMYASALN 308 (392) Q Consensus 232 ~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~--~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~-~~~~~~~l~ 308 (392) .-..|. +..+.|+.|.++.-+...+..+. .++-++....++ |- .++......+...... ...-.+.|. T Consensus 310 ~i~~g~---~~~~~lP~~~~~~~ie~~~~~~~~~~l~~~e~qm~~~----Ga--~l~~~~~~~Ta~~~~~~~~~~~S~L~ 380 (491) T protein:vir:95 310 GIKFGS---RCGHNLGYGGSAQLIQAGENNLARQNMLDKEQQAIQI----GA--QLITPSQQITAESARIQRGADTSVMA 380 (491) T ss_pred eeEecC---cCCcCCCCCCccceeecCcchHHHHHHHHHHHHHHHH----HH--HhccCCcchhHHHHHHHHHHhhHHHH Confidence 112222 22456666554444444333222 122222222222 21 2332111112111122 233456778 Q ss_pred HHHHHHHHHHHHHhh---hh--------h--ccchhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHHHhCCCCCccc-- Q lcl|Aclame:pro 309 RYLRPAISELEYKLS---DH--------I--SVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDL-- 373 (392) Q Consensus 309 p~l~~i~~~l~~~l~---~~--------~--~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~-- 373 (392) -+...+++.+++.|- .. + ..+.++............+-.++++|.++....++.|.+.|+...+. T Consensus 381 ~~a~~~e~al~~~l~~~a~w~G~~~~~~v~i~~n~dF~~~~~~~~~~~all~~~~~G~is~~t~~~~L~~~~vl~~~~e~ 460 (491) T protein:vir:95 381 TIARNVSQAYTDALRWVAMMLGKPEDSEVEFQLNMDFFLQPMTAQDRAAWMADINAGLLPATAYYAALRKAGVTDWTDED 460 (491) T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCceEEEeecccccccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccHHH Confidence 888888888887762 11 1 12222222222233456677788899999999999998878763221 Q ss_pred --ccccCCCCCCCCC--CCCCCC Q lcl|Aclame:pro 374 --PAPENTNKKTTGQ--SNEPVP 392 (392) Q Consensus 374 --~~~~~~~~~~~gd--~~~p~p 392 (392) .++++-++..++. ..--+| T Consensus 461 ~~~~ie~~~~~~~~~~~~~~~~~ 483 (491) T protein:vir:95 461 ILNAIEDAPLPSGAVTQVAGEIP 483 (491) T ss_pred HHHHHHhcCCCCCccccccccch Confidence 1222211111111 111112 No 248 >protein:vir:106999 Length: 564 # NCBI annotation: portal vertex protein gp20 # Family: family:all:1036 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195138;genbank:gi:58532915;interpro:IPR010823;uniprot:Q5GQN4;genbank:GeneID:3260496 Probab=30.55 E-value=1.6 Score=19.51 Aligned_cols=376 Identities=14% Similarity=0.166 Sum_probs=146.4 Q ss_pred CcchhhhhhcccccccccccccccccCcchhhhhhhccCC-------CCc--c------cc-hhhhhcchHHHHHHHHHH Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGD-------NNE--W------VS-ARAALRNSDLFSIILQLS 64 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~--~------~~-~~~al~~~~v~~~i~~ia 64 (392) |. .||.|-.......+ ..+..++..+.++-....+. .+. . +. -+..+.+|.|..||+.|. T Consensus 1 m~-~lfgf~i~~~~~~~---~~S~vpp~~~~~~~~i~~g~~g~~v~~~g~~~~~n~~eLI~~YR~ma~~pEVd~Av~eIV 76 (564) T protein:vir:10 1 MS-QLFGFLINEKEGQK---GQSPVPPNDEASVSTVAGGYFGTYVDTSGGQNSRNEYELIRRYRDMSLHPEVDSAIDEIV 76 (564) T ss_pred Cc-chhcceeeeeccCC---CCCcccCCcCCChhhhhccccceeeecccccchhhHHHHHHHHHHHhhccchhhHHHHhh Confidence 21 33444322222222 22233333222221111111 110 0 11 123456899999999999 Q ss_pred HhhhhC-----ceeee--cch------------hhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecc----cCCce Q lcl|Aclame:pro 65 SDLAIV-----KINAE--KKK------------NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRN----ANGAD 121 (392) Q Consensus 65 ~~ia~l-----p~~~~--~~~------------~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~----~~G~~ 121 (392) +.+.-. |+.+. +.+ -+.++.--|-...+++ ++.+|...|..|..++-+ ..| . T Consensus 77 neaIv~d~~~~pV~vdL~~~~~s~siK~kI~eEF~~Il~ll~F~~~~~e----~fR~WYVDgRi~fHkiid~~~pk~G-I 151 (564) T protein:vir:10 77 NEFVVNDGDDKPVEVDLQNLEIGSGVKKKIRDEFNRILRMMNFNVNAHE----IIRNWYVDGRSHYHKVIDLDNPKKG-I 151 (564) T ss_pred cceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhH----HHhhhhhcceEEEEEEeeCCChhhh-h Confidence 886432 22111 000 0111222333444444 455667889999887533 335 8 Q ss_pred eEEEEeccccceeeecCC------Cce---------------EEEEEEecCCc-------------ceeeEEEecceEEE Q lcl|Aclame:pro 122 MKWEYLRPSQVNTYYFEY------ENG---------------MYYNITFDDPK-------------IEPILQAPQSDLIH 167 (392) Q Consensus 122 ~~l~~l~~~~v~~~~~~~------~~~---------------~~~~~~~~~~~-------------~~~~~~~~~~~vih 167 (392) .+|..|+|..++.+...- +.. -++.|...... .+..+.++.+.|.| T Consensus 152 ~eLr~lDPr~i~~vr~i~~~~~~~~~~v~k~~~~~~~y~~~~Eyy~Ynp~~~~g~~~~~~~~~~~~~~~~ikI~~daI~y 231 (564) T protein:vir:10 152 LELRYIDSLKIRKVRQKLKDVDPNRKEIEKGTALQYDYGDFIEYYIYNPKGFAGNIPMVTGSMDWSNQEGIKIASDAIAQ 231 (564) T ss_pred hhhhhhcccceeeeeeeccccccccceeeeeeeeeccccccccceeeccccccCcccccccccccccccceeechhhcce Confidence 899999999777654211 111 11111111100 11235666666666 Q ss_pred ecC--CCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCch---------------------- Q lcl|Aclame:pro 168 MKL--LSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLS---------------------- 223 (392) Q Consensus 168 ~~~--~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~---------------------- 223 (392) ... .+.++. .=+|-|..+.+.+....-++....-+=-..+.-+=|.-++=+.... T Consensus 232 ~hSGL~d~~~~-~i~gyLhkAIKp~NQLkmlEDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa 310 (564) T protein:vir:10 232 STSGLMDLNKK-MTLSFLHKAIKSLNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKVKAEQYLRDVMSRYRNKLVYDG 310 (564) T ss_pred ecccceeCCCC-ceeccchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEec Confidence 542 111221 1234455555544444433332222111111111122222111111 Q ss_pred -------HHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccc---- Q lcl|Aclame:pro 224 -------DKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQ---- 292 (392) Q Consensus 224 -------~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~---- 292 (392) ++..-...+.|+-..+.| +.|.+++.|..... +-=++-..+..+.+..+++||..-|...+.+ T Consensus 311 ~TGevrddrk~msMlEDyWLPRReG-----grgTEItTLpGgqn-Lgem~DV~YF~kKLY~aLnVP~SRl~~e~~~f~~G 384 (564) T protein:vir:10 311 QTGEIRDDKKHMSMLEDFWLPRREG-----GRGTEITTLPGGQN-LGELKDVEYFKKKLYNSLNLPPSRLTDDNKAFNLG 384 (564) T ss_pred cCceecccchhhhhHhhhcccccCC-----CcccceeeccccCC-cchHHHHHHHHHHHHHHhCCCcccccCCCceeecc Confidence 111112222222222222 24566666665432 2224455677789999999999999754321 Q ss_pred cch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------------ccchhhhhhcCh--HH------HHHHHHHHH Q lcl|Aclame:pro 293 QSS-IQQISGMYASALNRYLRPAISELEYKLSDHI--------------SVNMRPAIDPLG--DN------YLSTISTAT 349 (392) Q Consensus 293 ~~~-~~~~~~~~~~~l~p~l~~i~~~l~~~l~~~~--------------~~d~~~~~~~~~--~~------~~~~~~~~~ 349 (392) .++ ..--+--+..||.-+-..+...|...|-+.+ .-+++..+..|. .+ +..++..+- T Consensus 385 r~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLiLKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~ 464 (564) T protein:vir:10 385 KSTEILRDELKFTKFIGRLRKRFAQLFHDILKTQLILKGIITPEDWDDMEEHIQYDFLFDNHFNELKEQEMQLQRVNLAT 464 (564) T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHH Confidence 111 1222333455555555555544444332110 001111111110 01 111111111 Q ss_pred h-----CCc------------cCHHHHHHH---HH---hCCC--CCcccccccCC-------CCC-------------CC Q lcl|Aclame:pro 350 R-----WGA------------LAENQATFV---LQ---EAGY--IPKDLPAPENT-------NKK-------------TT 384 (392) Q Consensus 350 ~-----~g~------------~t~nE~R~~---l~---~~g~--~~~e~~~~~~~-------~~~-------------~~ 384 (392) + +.. +|-.|+-+. +. ..|. .|.+.-.++++ +|. .. T Consensus 465 ~~dpyvGky~S~dyi~k~ILr~tDeei~~~~kqI~~E~k~~~~~~P~e~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 544 (564) T protein:vir:10 465 QMDPFVGKYFSTEYIRRKILMQTENEFKEIDKQMKSDIESGLAIDPIQVNMLDDMEKQNQAFAPELQAAQDDLAAEREIK 544 (564) T ss_pred HhhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCchhhhcCCCccCCCCcCCcchhhhccccccccChh Confidence 1 111 222222211 11 1232 23222111111 111 11 Q ss_pred --CCCCCCCC Q lcl|Aclame:pro 385 --GQSNEPVP 392 (392) Q Consensus 385 --gd~~~p~p 392 (392) +++.+|+| T Consensus 545 ~~~~a~~~~~ 554 (564) T protein:vir:10 545 KLNSAPKPPP 554 (564) T ss_pred hhccCCCCCC Confidence 23334444 No 249 >protein:vir:100039 Length: 522 # NCBI annotation: T7-like head-to-tail connector # Family: family:all:481 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214201;genbank:gi:61806424;genbank:GeneID:3294719 Probab=28.59 E-value=1.7 Score=19.27 Aligned_cols=339 Identities=12% Similarity=0.062 Sum_probs=130.8 Q ss_pred chhhhhhcccccccccccccccccCcchhhhhhhccC----CCC---cccchhhhhcchHHHHHHHHHHHhhhhC----- Q lcl|Aclame:pro 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLG----DNN---EWVSARAALRNSDLFSIILQLSSDLAIV----- 70 (392) Q Consensus 3 Mg~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~al~~~~v~~~i~~ia~~ia~l----- 70 (392) |.+...+.+.....+.. .+ .+..+...... ..+ ..-....-+-.++.-.|++.+|+.+-+. T Consensus 1 m~~~~r~~~L~~~R~~~--e~-----~w~e~~~~tlP~~~~~~~~~~~~~~~~~~~~dstg~~a~~~LAa~l~~~ltpp~ 73 (522) T protein:vir:10 1 MKARERYNQLTTARQMF--LD-----KAVECSELTLPYLIDDDISSRPNHKSLTVPWQSVGAKCCVTLAAKLMLAVLPPQ 73 (522) T ss_pred CchHHHHHHHHHHhhHH--HH-----HHHHHHHHhhhcccCCCCCCCcccccccccccchHHHHHHHHHHHHHHhhcCCC Confidence 77765444332222111 00 00111111110 000 0000111123456666777777766442 Q ss_pred -ceeeecchh---------------hhh-----------cccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeE Q lcl|Aclame:pro 71 -KINAEKKKN---------------QGI-----------IDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMK 123 (392) Q Consensus 71 -p~~~~~~~~---------------~~~-----------~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~ 123 (392) ||--..... +.+ +.+-| .+.=+..+..+|...|++.+++..+. .. T Consensus 74 ~~WF~l~~~d~~l~~~~~~~~~~~v~~~l~~ve~~~~~~l~~sn----f~~~~~~~~~~L~~~G~a~ly~~~~~----~~ 145 (522) T protein:vir:10 74 TSFFKLQVRDDKLGEELDPQIRSELDLSFSKMERMIMDYIAASN----DRVAVHQALKHLIVGGNALIFMGKDG----LK 145 (522) T ss_pred CccccccCChHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHhHCceeEEEcCCC----ce Confidence 332211100 011 12222 33334556677888999998764321 12 Q ss_pred EEEeccccceeeecCCCceE-------------------------------------EEEEEe--------------cCC Q lcl|Aclame:pro 124 WEYLRPSQVNTYYFEYENGM-------------------------------------YYNITF--------------DDP 152 (392) Q Consensus 124 l~~l~~~~v~~~~~~~~~~~-------------------------------------~~~~~~--------------~~~ 152 (392) .+|+. .+-+..|..|... ++...+ .+. T Consensus 146 ~~pl~--~y~v~~d~~G~vd~i~r~~~~t~~ql~~~fg~~~~~~~~~~~~~~~~~v~v~~~v~p~~~~~~~~~~~~~~~~ 223 (522) T protein:vir:10 146 TFPLT--RYVINRDGDGNVLEIVTKELISRKVLDIELPEPKPNTGIDESSTTNDDVTIYTYVKLDKSSGRWVWHQEAFDK 223 (522) T ss_pred EEEcc--eEEEeeCCCCCeeEEEeeeeccHHHHHHhcchhccchhhhcccCCCCceEEEEEEEeeccCCceEEEEccCCc Confidence 22321 2222222221111 111100 000 Q ss_pred cc-e--eeEEEecceEEEecCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHH Q lcl|Aclame:pro 153 KI-E--PILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKAS 229 (392) Q Consensus 153 ~~-~--~~~~~~~~~vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~ 229 (392) .. + ....+....++-.|....+|-.||.||+..+...+...+.+.+...........|..++.-++.....+ .. T Consensus 224 ~~~~~~s~~g~~~~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~~~~~~~a~~p~~lv~~~~~~~~~~-l~-- 300 (522) T protein:vir:10 224 IIPDSRSTAPKNASPWLPLRFNTVDGEDYGRGRVEEFLGDLKSLDGLSQSLIEGAAAASKVVFLVSPSSTTKPAT-IA-- 300 (522) T ss_pred cccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeecccccccccc-cc-- Confidence 00 0 001122223444455555677899999999999999999998888888888777776654333222111 00 Q ss_pred HHHHHhccccCCceeec--cCCceEEeccCChhhHH-HHHHHHHHHHHHHHHhcccHHHcCCcccc--cchH-HHHHHHH Q lcl|Aclame:pro 230 RSRSFMKRSRSGGPVVL--DDLEEFTALEIKSNVAQ-LLSQTDWTSKQYAKVYGLPDSYIGGQGDQ--QSSI-QQISGMY 303 (392) Q Consensus 230 ~~~~~~~~~~~g~~~vl--~~g~~~~~l~~~~~d~~-~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~--~~~~-~~~~~~~ 303 (392) .+. .+.++- .+++...+++. ..+.+ ..+..+..+..|..+|-+ +...+.. |..+ ....... T Consensus 301 -----~~~---~~~~v~g~~~~v~~~~~~~-~~d~~~~~~~i~~~~~ri~~aFl~----~~~~d~~rvTAtEV~~r~~E~ 367 (522) T protein:vir:10 301 -----KAG---NGAIVQGRPEDVAVIQVGK-TADFSTAANMATAIEKRLLEAFLV----MNVRNAERVTAEEVRLTQLEL 367 (522) T ss_pred -----CCC---CcceecCCCccceeecccc-cccchHHHHHHHHHHHHHHHHHhh----ccCCCCCCCCHHHHHHHHHHH Confidence 011 112222 22333343332 23333 345556667788887732 2221222 2222 1233445 Q ss_pred HHHHHHHHHHHHHHHHHHhhhh-hcc-chhhhhhcChHHH-----HHHHHHHHhCCccCHHHHHHHHHhCCCCCcccccc Q lcl|Aclame:pro 304 ASALNRYLRPAISELEYKLSDH-ISV-NMRPAIDPLGDNY-----LSTISTATRWGALAENQATFVLQEAGYIPKDLPAP 376 (392) Q Consensus 304 ~~~l~p~l~~i~~~l~~~l~~~-~~~-d~~~~~~~~~~~~-----~~~~~~~~~~g~~t~nE~R~~l~~~g~~~~e~~~~ 376 (392) ...|.|.+..+.++|-.-|... +.+ .-...+..-+.+. .+-++. +.++...+.+. ... T Consensus 368 ~~~LGpv~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~~~~~~v~~is~------Laraq~~~~l~---------~~~ 432 (522) T protein:vir:10 368 EQQLGGIFSLLVIEFLIPYLNRTLLVLQRSNQIPKLPKDIVRPTIVAGVNA------LGRGQDRESLT---------AFV 432 (522) T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccccccchhH------HHHHHHHHHHH---------HHH Confidence 5666777777766664322111 000 0000000000000 000000 11111111110 000 Q ss_pred cCCCCCCCCCCCCCC-C Q lcl|Aclame:pro 377 ENTNKKTTGQSNEPV-P 392 (392) Q Consensus 377 ~~~~~~~~gd~~~p~-p 392 (392) ..+..+- |+ +.+ + T Consensus 433 ~~i~~~~-~p--~~~~~ 446 (522) T protein:vir:10 433 GTIAQTL-GP--EALMQ 446 (522) T ss_pred HHHHHhh-Cc--hhhhh Confidence 0111111 10 000 1 No 250 >protein:vir:2198 Length: 536 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_041995;swissprot:sw:p03728;genbank:gi:9627467;goa:P03728;uniprot:P03728;genbank:GeneID:1261033 Probab=24.93 E-value=2.1 Score=18.80 Aligned_cols=340 Identities=11% Similarity=0.041 Sum_probs=122.6 Q ss_pred Ccchhhhhhcccccccccccccccc---cCcchhhhhhhccCCCC---cccchhh-------hhcchHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYF---PDGNDAQIMESLLGDNN---EWVSARA-------ALRNSDLFSIILQLSSDL 67 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~-------al~~~~v~~~i~~ia~~i 67 (392) +++.+ .+-...........+.+.- .....+.+...+++... ..++... ......|..-.+.+.+.+ T Consensus 39 lP~~~-~~~~~~~~~~~~~~~dst~~~a~~~Laa~l~~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~ 117 (536) T protein:vir:21 39 IPSLF-PKDSDNASTDYQTPWQAVGARGLNNLASKLMLALFPMQTWMRLTISEYEAKQLLSDPDGLAKVDEGLSMVERII 117 (536) T ss_pred ccccc-CCCCCcccccccccccccHHHHHHHHHHHHHHhhcCCCcccccccChhhhhccccchhhHHHHHHHHHHHHHHH Confidence 22221 1111111111111111110 00000111111111000 0000000 000111211222111111 Q ss_pred hhCceeeecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCceeEEEEeccccceeeecCCCceE---- Q lcl|Aclame:pro 68 AIVKINAEKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGM---- 143 (392) Q Consensus 68 a~lp~~~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~~l~~l~~~~v~~~~~~~~~~~---- 143 (392) ...+.+-|.+ .=+..+..+|..+|++.+++..+..+.+..+..+|...+-+..|..|... T Consensus 118 ------------~~~l~~snf~----~~~~~~~~~L~~~G~a~ly~~e~~~~~~~~f~~~pl~~~~v~~d~~G~vd~i~r 181 (536) T protein:vir:21 118 ------------MNYIESNSYR----VTLFEALKQLVVAGNVLLYLPEPEGSNYNPMKLYRLSSYVVQRDAFGNVLQMVT 181 (536) T ss_pred ------------HHHHHhcCcH----HHHHHHHHHHHhHCcEeEEEeeCCCCceeeEEEEEcCeEEEeeCCCCCeeEEee Confidence 1112233322 22335566777889999988755443333332233333333333322111 Q ss_pred -------------------------------EEEEEe--------------cCCcc---eeeEEEecceEEEecCCCccc Q lcl|Aclame:pro 144 -------------------------------YYNITF--------------DDPKI---EPILQAPQSDLIHMKLLSIDG 175 (392) Q Consensus 144 -------------------------------~~~~~~--------------~~~~~---~~~~~~~~~~vih~~~~~~~~ 175 (392) ++...+ ++... .....+....++..|....+| T Consensus 182 ~~~~t~~~l~~~fg~~~~~~~~~~~~~~~v~v~~~v~~~~~~~~~~~~~e~~g~~v~~~~g~~~f~~~P~i~~Rw~~~~g 261 (536) T protein:vir:21 182 RDQIAFGALPEDIRKAVEGQGGEKKADETIDVYTHIYLDEDSGEYLRYEEVEGMEVQGSDGTYPKEACPYIPIRMVRLDG 261 (536) T ss_pred eeeccHHHHHHhhhhhhcccccccccccceeEEEEEEEecCCCcEEEEeccCCeeeccccCccccccCCeeeeeeeecCC Confidence 010000 00000 011123334556666666777 Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCcee-eccCCceEEe Q lcl|Aclame:pro 176 GKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPV-VLDDLEEFTA 254 (392) Q Consensus 176 ~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-vl~~g~~~~~ 254 (392) -.||.||+..+...+...+.+.+.......-...|...+.-++ ...... .....+ |.++ -..++....+ T Consensus 262 e~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~~~~lv~p~g-~~~~~~--------~~~~~~-g~~v~g~~~~v~~~~ 331 (536) T protein:vir:21 262 ESYGRSYIEEYLGDLRSLENLQEAIVKMSMISSKVIGLVNPAG-ITQPRR--------LTKAQT-GDFVTGRPEDISFLQ 331 (536) T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCccc-ccchhh--------hccCCC-cceecCCcccceeee Confidence 7899999999999999888887777665555555444333221 111111 111111 1111 1123334455 Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hcc-chh Q lcl|Aclame:pro 255 LEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSI-QQISGMYASALNRYLRPAISELEYKLSDH-ISV-NMR 331 (392) Q Consensus 255 l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~-~~~~~~~~~~l~p~l~~i~~~l~~~l~~~-~~~-d~~ 331 (392) +...+.-.-..+..+..+.+|-.+|-+.....-....-|..+ ..........|.|.+..+.++|-.-|... +.. .-. T Consensus 332 ~~~~~~~~~~~~~i~~~~~rI~~af~~~~l~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~ 411 (536) T protein:vir:21 332 LEKQADFTVAKAVSDAIEARLSFAFMLNSAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQAT 411 (536) T ss_pred ccccccchHHHHHHHHHHHHHHHHHhhhhcccCCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhC Confidence 444333222356667777888888855421111111112222 22334455667777777777664433211 000 000 Q ss_pred hhhhcChHHHHHHHHHHHhCCccCH------H-HHHHHHHhCCCCCcccccccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 332 PAIDPLGDNYLSTISTATRWGALAE------N-QATFVLQEAGYIPKDLPAPENTNKKTTGQSNEPVP 392 (392) Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~g~~t~------n-E~R~~l~~~g~~~~e~~~~~~~~~~~~gd~~~p~p 392 (392) ..+..-+.+. ++..+.|. + ++-.++.. ...+ .+-.| T Consensus 412 g~lP~~p~~~-------v~~~~vs~l~~l~r~~~~~~l~~~----------~~~l--------a~~~P 454 (536) T protein:vir:21 412 QQIPELPKEA-------VEPTISTGLEAIGRGQDLDKLERC----------VTAW--------AALAP 454 (536) T ss_pred CCCCCCChhh-------ccceEEecHHHHHHHHHHHHHHHH----------HHHH--------Hhhch Confidence 0000001110 11111110 0 11111100 0001 11225 No 251 >protein:vir:10447 Length: 536 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:184 # MgeName: phiA1122 # Cross-refs: genbank:acc:NP_848294;genbank:gi:30387485;genbank:GeneID:1733984 Probab=24.50 E-value=2.2 Score=18.74 Aligned_cols=338 Identities=12% Similarity=0.024 Sum_probs=122.9 Q ss_pred Ccchhhhhhcccccccccccccccc---cCcchhhhhhhccCCCC---cccchhhh-------hcchHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYF---PDGNDAQIMESLLGDNN---EWVSARAA-------LRNSDLFSIILQLSSDL 67 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~a-------l~~~~v~~~i~~ia~~i 67 (392) +++.+ .+-...........+.+.- .....+.+...+++... ..++.... .....|..-.+.+.+.+ T Consensus 39 lP~~~-~~~~~~~~~~~~~~~dst~~~a~~~Laa~l~~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~ 117 (536) T protein:vir:10 39 IPSLF-PKDSDNASTDYQTPWQAVGARGLNNLASKLMLALFPMQTWMRLTISEYEAKQLLSDPDGLAKVDEGLSMVERII 117 (536) T ss_pred ccccc-CCCCCcccccccccccccHHHHHHHHHHHHHhhhcCCCcccccccChhhhhccccchhhHHHHHHHHHHHHHHH Confidence 22221 1111111111111111110 00001111111111000 00000000 00111211122111111 Q ss_pred hhCceeeecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEecccCCcee--EEEEeccccceeeecCCCceE-- Q lcl|Aclame:pro 68 AIVKINAEKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADM--KWEYLRPSQVNTYYFEYENGM-- 143 (392) Q Consensus 68 a~lp~~~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~~G~~~--~l~~l~~~~v~~~~~~~~~~~-- 143 (392) ...+.+-|.+ .=+..+..+|..+|++.+++..+..+.+. ..+|+ ..+-+..|..|... T Consensus 118 ------------~~~l~~snf~----~~~~~~~~~L~~~G~a~ly~~e~~~~~~~~~~~~pl--~~~~v~~d~~G~vd~i 179 (536) T protein:vir:10 118 ------------MNYIESNSYR----VTLFEALKQLVVAGNVLLYLPEPEGSNYNPMKLYRL--SSYVVQRDAFGNVLQM 179 (536) T ss_pred ------------HHHHHhcCcH----HHHHHHHHHHHhHCcEeEEEeeCCCCceeeEEEEEc--CeEEEeeCCCCCeeEE Confidence 1112233322 22335566777889999888655443333 33444 33333333322110 Q ss_pred -----------------------------------------------EEEEEecCCcc-e--eeEEEecceEEEecCCCc Q lcl|Aclame:pro 144 -----------------------------------------------YYNITFDDPKI-E--PILQAPQSDLIHMKLLSI 173 (392) Q Consensus 144 -----------------------------------------------~~~~~~~~~~~-~--~~~~~~~~~vih~~~~~~ 173 (392) .++...++... + ....+....++..|.... T Consensus 180 ~r~~~~t~~~l~~~fg~~~~~~~~~~~~~~~v~v~~~V~~~~~~~~~~~~~e~~g~~v~~~~g~~~f~~~P~i~~Rw~~~ 259 (536) T protein:vir:10 180 VTRDQIAFGALPEDIRKAVEGQGGEKKADETIDVYTHIYLDEASGEYLRYEEVEGMEVQGSDGTYPKEACPYIPIRMVRL 259 (536) T ss_pred eeeeeccHHHHHHhhhhhhcccccccCcccceEEEEEEEEecCCCcEEEEEeecCccccccccccccccCCceeeeeeec Confidence 11111111000 0 011233445566666667 Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCcee-eccCCceE Q lcl|Aclame:pro 174 DGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPV-VLDDLEEF 252 (392) Q Consensus 174 ~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-vl~~g~~~ 252 (392) +|-.||.||+..+...+...+.+.+.......-...|...+.-++ ...... .....+ |.++ -..++... T Consensus 260 ~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~~~~lv~p~g-~~~~~~--------~~~~~~-g~~v~g~~~~v~~ 329 (536) T protein:vir:10 260 DGESYGRSYIEEYLGDLRSLENLQEAIVKMSMISSKVIGLVNPAG-ITQPRR--------LTKAQT-GDFVTGRPEDISF 329 (536) T ss_pred CCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCccc-ccchhh--------hccCCC-cceecCCccccee Confidence 777899999999999999888887777665555555444333221 111111 111111 1111 11233344 Q ss_pred EeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hcc-c Q lcl|Aclame:pro 253 TALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSI-QQISGMYASALNRYLRPAISELEYKLSDH-ISV-N 329 (392) Q Consensus 253 ~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~-~~~~~~~~~~l~p~l~~i~~~l~~~l~~~-~~~-d 329 (392) .++...+.-.-..+..+..+.+|-.+|-+.....-....-|..+ ..........|.|.+..+.++|-.-|... +.. . T Consensus 330 ~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~l~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~ 409 (536) T protein:vir:10 330 LQLEKQADFTVAKAVSDAIEARLSFAFMLNSAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQ 409 (536) T ss_pred eeccccccchHHHHHHHHHHHHHHHHHhhhhcccCCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH Confidence 55444333222356667777888888855421111111112222 22334455667777777777664433211 000 0 Q ss_pred hhhhhhcChHHHHHHHHHHHhCCccCH------H-HHHHHHHhCCCCCcccccccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 330 MRPAIDPLGDNYLSTISTATRWGALAE------N-QATFVLQEAGYIPKDLPAPENTNKKTTGQSNEPVP 392 (392) Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~g~~t~------n-E~R~~l~~~g~~~~e~~~~~~~~~~~~gd~~~p~p 392 (392) -...+..-+.+. ++..+.|. + ++-.++.. ...+ .+-.| T Consensus 410 r~g~lP~~p~~~-------v~~~~vs~l~~l~r~~~~~~l~~~----------~~~l--------a~~~P 454 (536) T protein:vir:10 410 ATQQIPELPKEA-------VEPTISTGLEAIGRGQDLDKLERC----------VTAW--------AALAP 454 (536) T ss_pred hCCCCCCCChhh-------ccceEEecHHHHHHHHHHHHHHHH----------HHHH--------Hhhch Confidence 000010001110 11111110 0 11111100 0001 11225 No 252 >protein:vir:6896 Length: 523 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861872;genbank:gi:32453663;genbank:GeneID:1494298 Probab=24.22 E-value=2.2 Score=18.70 Aligned_cols=366 Identities=11% Similarity=0.093 Sum_probs=143.6 Q ss_pred chh-----hhhhccc-c---cccccccccccccCcchhhh-------hhh-----------ccCCCCcc------cc-hh Q lcl|Aclame:pro 3 LPI-----LNFINQT-N---DPPEAGSVQSYFPDGNDAQI-------MES-----------LLGDNNEW------VS-AR 48 (392) Q Consensus 3 Mg~-----~n~~~~~-~---~~~~~~~~~~~~~~~~~~~~-------~~~-----------~~~~~~~~------~~-~~ 48 (392) |.| |.|..+. . .........+..++..+.+. ... +.+..+.. +. -+ T Consensus 1 m~f~~~~lf~f~~~~de~~~~~~~~~~~~S~~~p~~dDGa~~i~~~~~~~~~~~~~~~q~~y~~~e~~~~~~~eLI~~YR 80 (523) T protein:vir:68 1 MKFNILSLFAPWAKMDERDYKDQEKENLESITSPKLDDGAKEYEVSENEAQQTYNAMFQRMFGSQEPGLKSTRELIDTYR 80 (523) T ss_pred CCCchhhhhhhhhhhhhhhhhhhhhccCCCccccCCCCcceeeeccccccccccchhhhhhhhccccccchHHHHHHHHH Confidence 333 2222221 1 01111112222222222110 000 11111110 11 13 Q ss_pred hhhcchHHHHHHHHHHHhhhhCc-----eeeecch--------------hhhhcccCCccCCHHHHHHHHHHHHHHhCCe Q lcl|Aclame:pro 49 AALRNSDLFSIILQLSSDLAIVK-----INAEKKK--------------NQGIIDNPSTNANKHGFWQSMFAQLLLGGEA 109 (392) Q Consensus 49 ~al~~~~v~~~i~~ia~~ia~lp-----~~~~~~~--------------~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a 109 (392) ..+.+|.|..||+-|.+.+.-.. +.+.=.. -+.++.--+-...+++ ++..|...|.. T Consensus 81 ~ma~~pEvd~Av~eIVneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~----~fR~WYVDgRi 156 (523) T protein:vir:68 81 NLMTNYEVDNAVSEIVSDAIVYEDDTEVVSINLDNTKFSPNIKSMMLDEFNEVLNHLSFQRKGSD----HFRRWYVDSRI 156 (523) T ss_pred HHhhccchhhHHHHhhcceeeecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhH----HHHhheeeeEE Confidence 44568999999999998875442 2211000 0111222333444444 45566788999 Q ss_pred eEEEecc---cCCceeEEEEeccccceeee-----cCCCc------eEEEEEEecC---------CcceeeEEEecceEE Q lcl|Aclame:pro 110 FAYRWRN---ANGADMKWEYLRPSQVNTYY-----FEYEN------GMYYNITFDD---------PKIEPILQAPQSDLI 166 (392) Q Consensus 110 ~~~i~r~---~~G~~~~l~~l~~~~v~~~~-----~~~~~------~~~~~~~~~~---------~~~~~~~~~~~~~vi 166 (392) |..++-+ .+.-..+|..|+|..+..+. ++.+. ..++.|.... ...+..+.++.+-|. T Consensus 157 ~fhKiid~k~pk~GI~Elr~lDPr~i~~vr~i~~~~~~g~~vi~~~~e~f~Y~~~~~~~~~~g~~~~~~~~ikI~~dAI~ 236 (523) T protein:vir:68 157 FFHKIIDPKRPKEGIKELRRLDPRQVQYVREVITTTEAGVKIVKGYKEYFIYDTSHESYACDGRIYEAGTKIKIPKAAIV 236 (523) T ss_pred EEEEEeeCCCccccceeeeeeCCcceeEEEeecCCCCcchhhhhhhhhheeeccccccccccccccCCCcceecchhhee Confidence 9888644 23348899999999987632 22211 1111111100 011234566666655 Q ss_pred EecCCCccccc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCch--------------------- Q lcl|Aclame:pro 167 HMKLLSIDGGK--TGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLS--------------------- 223 (392) Q Consensus 167 h~~~~~~~~~~--~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~--------------------- 223 (392) |.. .+..+.. .=+|-|..+.+.+....-++....-+=-..+.-+=|.-++=+..+. T Consensus 237 y~h-SGL~d~~~~~i~gyLhkAiKp~NQLkmlEDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNKlvYD 315 (523) T protein:vir:68 237 YAH-SGLVDCCGKNIIGYLHRAIKPANQLKLLEDAVVIYRITRAPDRRVWYVDTGNMPSRKAAEHMQHVMNTMKNRIAYD 315 (523) T ss_pred eee-ccceeCCCCceeccchhhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhhcceeEEe Confidence 544 2222211 1234455555544444433333222111111111222222111111 Q ss_pred --------HHHHHHHHHHHhccccCCceeeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCccc-cc- Q lcl|Aclame:pro 224 --------DKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGD-QQ- 293 (392) Q Consensus 224 --------~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~-~~- 293 (392) ++..-...+.|+-..+.| +.|.+++.|..... +.-++-..+..+.+..+++||..-|..... .+ T Consensus 316 a~TGev~ddrk~msMlEDyWLpRReG-----grgTEItTLpGgqn-lgem~DV~YF~kkLy~aLnVP~sRl~~~~~~f~~ 389 (523) T protein:vir:68 316 ATTGKIKNQQHIMSMTEDYWLQRRDG-----KAVTEVDTLPGADN-TGNMEDVRWFRNALYMALRIPITRIPSDQGGIQF 389 (523) T ss_pred ccCCeeccchhhhhhHhhhcccccCC-----CcccceeeccccCC-cChHHHHHHHHHHHHHHhCCcceeecCCCcceec Confidence 111112222233222222 24566666665422 222455667778999999999999954321 11 Q ss_pred --ch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------------ccchhhhhhcCh--HH------HHHHHHHH Q lcl|Aclame:pro 294 --SS-IQQISGMYASALNRYLRPAISELEYKLSDHI--------------SVNMRPAIDPLG--DN------YLSTISTA 348 (392) Q Consensus 294 --~~-~~~~~~~~~~~l~p~l~~i~~~l~~~l~~~~--------------~~d~~~~~~~~~--~~------~~~~~~~~ 348 (392) ++ ..--+--+..++.-+-..+...|...|-+.+ .-+++..+..|. .+ +..+++.+ T Consensus 390 Gr~~EItRDEikF~KFI~rLR~rFs~lf~~~Lk~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l 469 (523) T protein:vir:68 390 DAGTSITRDELSFGKFIRELQHKFEEIFLDPLKTNLILKGIITEDEWNDEINNIKIKFHRDSYFSELKDAEILERRINML 469 (523) T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEeeeecchHHHHHHHHHHHHHHHHH Confidence 11 1222333455555555555555544332211 111111111111 11 11222222 Q ss_pred Hh-----CCccCHHHHHHH-HH-----------------hCCCCCcccccccCC Q lcl|Aclame:pro 349 TR-----WGALAENQATFV-LQ-----------------EAGYIPKDLPAPENT 379 (392) Q Consensus 349 ~~-----~g~~t~nE~R~~-l~-----------------~~g~~~~e~~~~~~~ 379 (392) -+ +..++.+=+++. |. ..|.-++...+.++. T Consensus 470 ~~~dpyvGky~s~~yi~k~ILr~tDeei~~~~kqI~~E~k~~~~~~p~~e~~~f 523 (523) T protein:vir:68 470 QMAEPFIGKYISHRTAMKDILQMSDEEIEQEAKQIEEESKEARFQDPDQEQEDF 523 (523) T ss_pred HHhhhhhcccchhHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCCchhhhcC Confidence 11 223333333322 11 112222111111222 No 253 >protein:vir:105154 Length: 525 # NCBI annotation: conserved phage-related protein # Family: family:all:6660 # MgeID: mge:1466 # MgeName: C-St # Cross-refs: genbank:acc:YP_398597;genbank:gi:80159853;genbank:GeneID:3772992 Probab=21.31 E-value=2.6 Score=18.29 Aligned_cols=374 Identities=12% Similarity=0.117 Sum_probs=132.7 Q ss_pred Ccchhh-hhhcc-cccccccccccccccCcchhhhhhhccCCCCcccchhhhhc--chHHHHHHHHHHHhhhhCceeee- Q lcl|Aclame:pro 1 MILPIL-NFINQ-TNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALR--NSDLFSIILQLSSDLAIVKINAE- 75 (392) Q Consensus 1 m~Mg~~-n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~--~~~v~~~i~~ia~~ia~lp~~~~- 75 (392) .+-||. |.+.+ .-..........|+....... +.+ ++--++.. ...|+.-.+ -|-+||.--| T Consensus 45 f~~gfv~~~~~ng~i~~v~~~~l~~~f~npd~~~--~~i-------~~l~~y~yi~~~~v~ql~~----li~~lp~l~y~ 111 (525) T protein:vir:10 45 FIDGFVMDLCNNGKIKTVNLDTLQLWFNNPDKYI--NNI-------VNLLTYYYIIDGNVFQLYD----LIFSLPPLDYQ 111 (525) T ss_pred HHHHHHHHhhcCCceeeeeHHHHHhhhcChHHHH--HHH-------HHHHHHhhhhcchHHHHHH----HHHhcCCccee Confidence 233332 22221 111122222222221111000 000 00000111 112333333 3334443211 Q ss_pred ----c--chhhh----hcccCCccCCHHHHHHHHHHHHHHhCCee--------------------EEEecccCCceeEEE Q lcl|Aclame:pro 76 ----K--KKNQG----IIDNPSTNANKHGFWQSMFAQLLLGGEAF--------------------AYRWRNANGADMKWE 125 (392) Q Consensus 76 ----~--~~~~~----~~~~PN~~~t~~~f~~~~~~~l~l~G~a~--------------------~~i~r~~~G~~~~l~ 125 (392) . ++.+. ++..-....-..++-+.+..++...|--. ++..-..+|..+. T Consensus 112 i~~~~~~k~~~~~~s~~n~~l~k~i~hk~ltrdll~q~a~~gtlig~wlg~~~~py~~vf~~~kyvfp~~r~~g~~v~-- 189 (525) T protein:vir:10 112 IKVLKRDKDYKEDLSTINLYLEKKIQHKQLTRDLLVQLAHSGTLIGTWLGSKREPYFNVFNNLKYVFPYGRAKGKMVA-- 189 (525) T ss_pred ehhhhhccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhccCceeEeeecCCCCcchhhhhhhhhhccccccCCceEE-- Confidence 1 11111 11111111111122222333333333211 1111111222111 Q ss_pred Eeccccceeeec---------------CCCceEEEEEEecCCcceeeEEEecceEEEecCCCcc-ccccCCCHHHHHHHH Q lcl|Aclame:pro 126 YLRPSQVNTYYF---------------EYENGMYYNITFDDPKIEPILQAPQSDLIHMKLLSID-GGKTGISPLYSLRRE 189 (392) Q Consensus 126 ~l~~~~v~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~~~~~~~-~~~~G~s~l~~~~~~ 189 (392) +++-.+.+-..+ .....-+-.|.-.+...-....+|.+.++|.|...+. +..-|.|-+..+.-. T Consensus 190 vid~~~f~~~~~~~r~~~~~~lsp~i~~~~y~~~~~~~~~~~~~~r~i~LP~e~t~~lr~~tl~rnqrlG~s~vtp~l~d 269 (525) T protein:vir:10 190 VIDLQWFDEMSELERKLTFENLSPLITENKYKKWKEYNGENEDALRYIMLPISKTLVARIHTLSRNQRLGIPYGTQTLFD 269 (525) T ss_pred EEehHHhhhhhHHHHHHHHHhhchhhhhhhhhHHhhcccccchhheeeecccceeEEeeecccccCcccCcchhhhHHHH Confidence 111111111000 0000000011000101112357889999999854332 334488888777777 Q ss_pred HHHHHHHHHHHHHHHHccCCcceEEeeCCCC----CchHHHHHHH---HHHH--hccccCCceeec--cCCce--EEecc Q lcl|Aclame:pro 190 SKIQRASDRLTISSLNSSLNVPGVLTVKGGG----LLSDKDKASR---SRSF--MKRSRSGGPVVL--DDLEE--FTALE 256 (392) Q Consensus 190 i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~----~~~~~~~~~~---~~~~--~~~~~~g~~~vl--~~g~~--~~~l~ 256 (392) |.......+.......+-..|-.++++-+.. ...+...++. .+.. .+.+...+++++ +.=++ |-.+. T Consensus 270 I~hk~klrd~EqsIA~kii~a~avLk~gg~~gn~mk~p~~~kqkil~gVk~aleK~~kdK~Gi~vi~~Pdfa~~efp~ik 349 (525) T protein:vir:10 270 IQHKQKLRDLEQSIADKIIKAMAVLKFRGKDDNDSKVKESAKRKVLAGVKRALEKGVKDKNGIACIAMPDFATFEFPEIK 349 (525) T ss_pred HHHHHHHHHHHHHHHHHhhhhheeeeeccccCccccCchHHHHHHHHHHHHHHhcccccccCeEEEeccceeeccccccc Confidence 7666666555555555656677788874422 2223222111 1111 223333344442 32222 22222 Q ss_pred CChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhh---------h Q lcl|Aclame:pro 257 IKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQ-QISGMYASALNRYLRPAISELEYKLSDH---------I 326 (392) Q Consensus 257 ~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~-~~~~~~~~~l~p~l~~i~~~l~~~l~~~---------~ 326 (392) ....-.+- .-.+....+|-.++|++..++++...++.+.+ +..-||.. +.-+++.|++..+ +|+.- + T Consensus 350 ~~~~glDg-~K~d~I~~DI~~A~GlS~sL~nGdggNyAtaslnld~fykk-igVm~e~Iee~y~-kL~d~Vl~~~k~~ny 426 (525) T protein:vir:10 350 NGDKTLDP-KKYDSIDNDITNATGISQVLTNGTKGNYASAKLNLDVFYKK-IGVMLEIIEEIYN-QLIDIILGEEKGCNY 426 (525) T ss_pred CcccCCCc-hhhhhhhhhhhhhhccceeeecCCCCceeeeeeeHHHHHHH-HHHHHHHHHHHHH-HHHhhhcCcccCcce Confidence 21111110 12234457999999999999988766555544 45556554 7788899996665 44321 1 Q ss_pred ccchhhhhhcChHHHHHHHHHHHhCCccCHH-------------H--HHH----HHHhCCCCCcc--c-----ccccCCC Q lcl|Aclame:pro 327 SVNMRPAIDPLGDNYLSTISTATRWGALAEN-------------Q--ATF----VLQEAGYIPKD--L-----PAPENTN 380 (392) Q Consensus 327 ~~d~~~~~~~~~~~~~~~~~~~~~~g~~t~n-------------E--~R~----~l~~~g~~~~e--~-----~~~~~~~ 380 (392) -|+++.....+.++....+-++...|+...- | .|+ .|.+.-++|.. + +..-+-| T Consensus 427 ifnydkd~pi~~kkk~d~LIkL~d~g~s~k~vldl~gis~e~y~E~s~yEtE~lkl~EKi~pp~~~~v~SGk~~n~iG~P 506 (525) T protein:vir:10 427 IFQYNKDTPIEREKKLDTLIKLEAQGYSAKYVLDILGISSEEYFEESIYEIEKLKLREKIMPPLNTNVLSGKDGNDIGSP 506 (525) T ss_pred EEecCCCchhhhhhhhhhhhhhhccchhhhhhhhhhccCcchHHHHHHHHHHHHHHhhhccccccceeeeccccccccCC Confidence 2222111111222222233333333332211 1 011 12222222210 0 1111122 Q ss_pred CCCCCCCCCCCC Q lcl|Aclame:pro 381 KKTTGQSNEPVP 392 (392) Q Consensus 381 ~~~~gd~~~p~p 392 (392) ...+.+.++..= T Consensus 507 ~~dd~~~~dati 518 (525) T protein:vir:10 507 KLDDSDSSDATI 518 (525) T ss_pred ccCCCcchhhhh Confidence 222222222111 No 254 >protein:vir:99672 Length: 532 # NCBI annotation: Head-to-tail joining protein # Family: family:all:481 # MgeID: mge:1523 # MgeName: VP4 # Cross-refs: genbank:acc:YP_249587;genbank:gi:68299738;genbank:GeneID:3799987 Probab=20.46 E-value=2.8 Score=18.16 Aligned_cols=350 Identities=14% Similarity=0.066 Sum_probs=120.4 Q ss_pred Ccchhhhhhcccccccccccccccc---cCcchhhhhhhccCCCCcc----cchhhhhcc--------hHHHHHHHHHHH Q lcl|Aclame:pro 1 MILPILNFINQTNDPPEAGSVQSYF---PDGNDAQIMESLLGDNNEW----VSARAALRN--------SDLFSIILQLSS 65 (392) Q Consensus 1 m~Mg~~n~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~al~~--------~~v~~~i~~ia~ 65 (392) +++.+ ..-...........+.+.- .....+.+...+++.+.-+ ++.. .+.. ..|..-...+.+ T Consensus 40 lP~~~-~~~~~~~~~~~~~~~dst~~~a~~~LAa~L~~~ltpp~~~WF~l~~~d~-~l~~~~~~~~~~~~v~~~L~~ve~ 117 (532) T protein:vir:99 40 IPSVF-PSATADGSTSYTTPWQSIGARGLNNLASKLMLALFPVGSSFFKLNVSEL-EVKQSITSPEELTEIATGLAMVER 117 (532) T ss_pred hhccc-CCCCCcchhhccccccchHHHHHHHHHHHHHHhhcCCCCccccccCCHH-HHhccCCChhhHHHHHHHHHHHHH Confidence 44321 1111110000000000000 0000111111122211111 1111 1110 112111111111 Q ss_pred hhhhCceeeecchhhhhcccCCccCCHHHHHHHHHHHHHHhCCeeEEEeccc--CCce--eEEEEeccccceeeecCCCc Q lcl|Aclame:pro 66 DLAIVKINAEKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNA--NGAD--MKWEYLRPSQVNTYYFEYEN 141 (392) Q Consensus 66 ~ia~lp~~~~~~~~~~~~~~PN~~~t~~~f~~~~~~~l~l~G~a~~~i~r~~--~G~~--~~l~~l~~~~v~~~~~~~~~ 141 (392) .+ ...+.+-|. +.=+..+..+|..+|++.+++..+. .+.. ...+|+ ..+-+..|..|. T Consensus 118 ~~------------~~~~~~snf----~~~~~~~~~~L~~~G~a~l~~~~~~~~~~~~~~f~~~pl--~~y~v~~d~~G~ 179 (532) T protein:vir:99 118 IC------------MNYMESNSF----RPTLHAAIKQLLVAGNVLLYIPSTEQVEGQSNAPKLYKL--HNFVVERDAYDN 179 (532) T ss_pred HH------------HHHHHhcCc----HHHHHHHHHHHHhHCcEeEEecccccccCcccceEEEEc--CeEEEeeCCCCC Confidence 11 111222232 2333455666778899987764331 1222 222333 222222222221 Q ss_pred e------------------------------------------------EEEEEEecCCc--cee--eEEEecceEEEec Q lcl|Aclame:pro 142 G------------------------------------------------MYYNITFDDPK--IEP--ILQAPQSDLIHMK 169 (392) Q Consensus 142 ~------------------------------------------------~~~~~~~~~~~--~~~--~~~~~~~~vih~~ 169 (392) . .+..+....+. .+. ...+....++-.| T Consensus 180 v~~ivrr~~~~~~~l~e~~~~~~~~~~~~~~p~~~v~v~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~e~P~~~~R 259 (532) T protein:vir:99 180 VLQIVTEDKIARAALPEDVRKSLEDAQGDQNPSEEVTIYTHVYRDPEAMVFRSYQEIDGEIVAGTEGEYPLDSCPWIPVR 259 (532) T ss_pred eeeEeeeeeecHHhcChHHHHHhhccccccCCCcceEEEEEEEecCCCCeeEEEEeecCceecccccccccccCCceeee Confidence 1 01111110000 000 0112223444455 Q ss_pred CCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEeeCCCCCchHHHHHHHHHHHhccccCCceee--cc Q lcl|Aclame:pro 170 LLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVV--LD 247 (392) Q Consensus 170 ~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v--l~ 247 (392) ....+|-.||.||+..+...+...+.+.+...........|..++.-++... .... ....+ | .++ .. T Consensus 260 w~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~~~~lv~p~g~~~-~~~~--------~~~~~-g-~~v~g~~ 328 (532) T protein:vir:99 260 LIKMPNEDYGRSFVEEYLGDLKSLENLYEAIVKMSMISSKVLFFVNPNGVTQ-IRRV--------AKANT-G-DFVAGRK 328 (532) T ss_pred eeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeccccccc-hhhh--------ccCCC-c-ceecCCc Confidence 5556677899999999999999999888877777776666665544332211 1111 01111 1 111 12 Q ss_pred CCceEEeccCChhhHHHHHHHHHHHHHHHHHhcccHHHcCCcccccchH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhh- Q lcl|Aclame:pro 248 DLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSI-QQISGMYASALNRYLRPAISELEYKLSDH- 325 (392) Q Consensus 248 ~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~-~~~~~~~~~~l~p~l~~i~~~l~~~l~~~- 325 (392) +++...++...+.-.-..+..+..+.+|-.+|=+.....-+...-|..+ .....-....|.|.+..+.++|-.-|... T Consensus 329 ~~i~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~~~~~d~~r~TAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~r~ 408 (532) T protein:vir:99 329 QDVEVFQLEKYNDFQVAKATADDIEKRLSYAFMLNSAVQRGGDRVTAEEIRYVAGELEDTLGGVYSLLSQELQLPLVKIL 408 (532) T ss_pred ccceeeecccccchhHHHHHHHHHHHHHHHHHhhhhcccCCCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH Confidence 3334444443322222355666777888888844421111111112222 12334455667777777777765433211 Q ss_pred hcc-chhhhhhcChHHHHHHHHHHHhCCccCHHHHHHHH-HhCCCCCcccccccCCCCCCCCCCCCCCC Q lcl|Aclame:pro 326 ISV-NMRPAIDPLGDNYLSTISTATRWGALAENQATFVL-QEAGYIPKDLPAPENTNKKTTGQSNEPVP 392 (392) Q Consensus 326 ~~~-d~~~~~~~~~~~~~~~~~~~~~~g~~t~nE~R~~l-~~~g~~~~e~~~~~~~~~~~~gd~~~p~p 392 (392) +.+ .-...+..-+.+..... .......+.++...+.+ ...+ .+..+.+.-.+.--+ T Consensus 409 ~~il~r~g~lP~~p~~~~~~~-iv~~is~Laraq~~~~l~~~~~----------~laq~~p~~~d~id~ 466 (532) T protein:vir:99 409 LKELQATSKIPNLPKEAVEPA-IATGLEALGRGHDLNKLNVFID----------YMIKLAGLQDDDINL 466 (532) T ss_pred HHHHHhcCCCCCCChhhcccc-eeecchHHHHHHHHHHHHHHHH----------HHHhhcchhhhhCCH Confidence 000 00000100111110000 00000001111111111 0001 111111000000001 Done!