Query lcl|Aclame:protein:vir:5691|NCBI_annot:gpQ|genbank:acc:NP_839850;genbank:gi:30065705;genbank:GeneID:1260599 Match_columns 344 No_of_seqs 223 out of 1045 Neff 8.6 Searched_HMMs 1612 Date Sat Nov 30 22:16:10 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_1 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_1_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:5691 Length: 344 # 100.0 6E-113 4E-116 635.8 35.6 344 1-344 1-344 (344) 2 protein:vir:6058 Length: 344 # 100.0 1E-111 7E-115 628.8 36.0 344 1-344 1-344 (344) 3 protein:vir:2013 Length: 344 # 100.0 2E-111 1E-114 627.4 35.7 344 1-344 1-344 (344) 4 protein:vir:98567 Length: 340 100.0 3E-109 2E-112 615.8 34.8 340 1-343 1-340 (340) 5 protein:vir:79207 Length: 351 100.0 4E-108 2E-111 609.6 35.3 344 1-344 1-349 (351) 6 protein:vir:103971 Length: 376 100.0 6E-108 4E-111 608.4 34.3 344 1-344 26-374 (376) 7 protein:vir:1150 Length: 350 # 100.0 1E-107 7E-111 607.0 35.2 342 1-342 1-350 (350) 8 protein:vir:78191 Length: 351 100.0 1E-107 9E-111 606.2 35.1 344 1-344 1-349 (351) 9 protein:vir:79150 Length: 368 100.0 7E-105 4E-108 591.5 34.4 344 1-344 1-357 (368) 10 protein:vir:100328 Length: 346 100.0 3E-102 2E-105 577.3 35.0 341 1-343 1-346 (346) 11 protein:vir:267 Length: 348 # 100.0 2E-101 1E-104 572.3 34.2 336 1-344 1-345 (348) 12 protein:vir:78749 Length: 337 100.0 1.1E-98 7E-102 557.6 33.0 333 1-344 1-336 (337) 13 protein:vir:3780 Length: 345 # 100.0 4E-98 2E-101 554.5 33.5 334 1-341 1-345 (345) 14 protein:vir:3743 Length: 345 # 100.0 1.2E-96 8E-100 546.4 33.3 334 1-341 1-345 (345) 15 protein:vir:4194 Length: 540 # 100.0 5.9E-69 3.7E-72 394.6 30.0 318 25-344 1-371 (540) 16 protein:vir:4156 Length: 542 # 100.0 7.5E-68 4.7E-71 388.6 29.7 325 1-344 1-373 (542) 17 protein:vir:1884 Length: 424 # 100.0 8.5E-64 5.3E-67 366.4 28.9 328 1-344 20-358 (424) 18 protein:vir:189 Length: 424 # 100.0 1.7E-63 1E-66 364.7 29.0 327 1-344 17-358 (424) 19 protein:vir:63755 Length: 547 100.0 2E-62 1.2E-65 358.9 27.6 323 1-344 31-422 (547) 20 protein:vir:80644 Length: 551 100.0 1E-61 6.5E-65 354.9 30.5 329 1-344 18-426 (551) 21 protein:vir:100249 Length: 431 100.0 2E-61 1.2E-64 353.4 30.5 331 1-344 1-363 (431) 22 protein:vir:4509 Length: 424 # 100.0 7.3E-62 4.5E-65 355.8 28.0 325 1-344 17-356 (424) 23 protein:vir:100150 Length: 437 100.0 1.8E-61 1.1E-64 353.7 27.9 326 1-344 1-352 (437) 24 protein:vir:93610 Length: 454 100.0 2.7E-61 1.6E-64 352.7 27.6 323 1-344 4-349 (454) 25 protein:vir:80796 Length: 574 100.0 9.3E-61 5.8E-64 349.7 28.6 323 1-344 27-430 (574) 26 protein:vir:101648 Length: 518 100.0 2.6E-60 1.6E-63 347.3 29.8 323 1-344 1-348 (518) 27 protein:vir:4337 Length: 434 # 100.0 3.4E-60 2.1E-63 346.6 30.1 330 1-344 1-355 (434) 28 protein:vir:1380 Length: 422 # 100.0 1.9E-60 1.2E-63 348.0 27.9 325 1-344 1-354 (422) 29 protein:vir:3868 Length: 417 # 100.0 3.1E-60 1.9E-63 346.9 28.7 322 1-344 1-333 (417) 30 protein:vir:8100 Length: 466 # 100.0 1.6E-60 9.8E-64 348.4 27.0 334 1-344 1-386 (466) 31 protein:vir:7853 Length: 518 # 100.0 4.9E-60 3E-63 345.7 29.6 327 1-344 1-348 (518) 32 protein:vir:99452 Length: 651 100.0 1.9E-60 1.1E-63 348.1 25.3 332 1-344 1-460 (651) 33 protein:vir:102080 Length: 429 100.0 2.4E-60 1.5E-63 347.4 25.9 327 1-344 1-352 (429) 34 protein:vir:4454 Length: 414 # 100.0 4.7E-60 2.9E-63 345.9 27.4 323 1-344 1-341 (414) 35 protein:vir:5737 Length: 419 # 100.0 4.8E-60 3E-63 345.8 27.3 326 1-344 1-342 (419) 36 protein:vir:101647 Length: 460 100.0 1.1E-59 6.6E-63 343.9 29.1 337 1-344 1-392 (460) 37 protein:vir:10362 Length: 432 100.0 5.5E-60 3.4E-63 345.5 27.2 323 1-344 10-354 (432) 38 protein:vir:1326 Length: 457 # 100.0 4.5E-60 2.8E-63 345.9 26.3 329 1-344 1-357 (457) 39 protein:vir:102855 Length: 432 100.0 5.6E-60 3.5E-63 345.4 26.0 323 1-344 1-355 (432) 40 protein:vir:105002 Length: 432 100.0 5.6E-60 3.5E-63 345.4 26.0 323 1-344 1-355 (432) 41 protein:vir:107605 Length: 432 100.0 5.6E-60 3.5E-63 345.4 26.0 323 1-344 1-355 (432) 42 protein:vir:6240 Length: 457 # 100.0 1E-59 6.3E-63 344.0 27.2 328 1-344 1-357 (457) 43 protein:vir:81152 Length: 411 100.0 4.8E-60 3E-63 345.8 25.0 323 1-344 1-346 (411) 44 protein:vir:105064 Length: 421 100.0 7.5E-60 4.6E-63 344.7 25.3 325 1-344 1-344 (421) 45 protein:vir:79984 Length: 441 100.0 2.8E-59 1.7E-62 341.6 28.3 318 1-344 26-362 (441) 46 protein:vir:9408 Length: 441 # 100.0 2.8E-59 1.7E-62 341.6 28.3 318 1-344 26-362 (441) 47 protein:vir:98396 Length: 441 100.0 4.2E-59 2.6E-62 340.6 28.4 318 1-344 26-362 (441) 48 protein:vir:102118 Length: 409 100.0 2.5E-59 1.5E-62 341.9 27.1 324 1-344 1-344 (409) 49 protein:vir:95599 Length: 563 100.0 8.8E-59 5.5E-62 338.9 30.0 317 1-344 46-433 (563) 50 protein:vir:99312 Length: 563 100.0 8.8E-59 5.5E-62 338.9 30.0 317 1-344 46-433 (563) 51 protein:vir:94666 Length: 723 100.0 5.2E-59 3.2E-62 340.1 28.6 305 1-344 1-340 (723) 52 protein:vir:1082 Length: 359 # 100.0 4E-59 2.5E-62 340.7 27.3 315 1-344 1-329 (359) 53 protein:vir:81072 Length: 432 100.0 6.5E-59 4E-62 339.6 27.9 323 1-344 7-354 (432) 54 protein:vir:97060 Length: 432 100.0 4.7E-59 2.9E-62 340.3 26.9 323 1-344 10-354 (432) 55 protein:vir:80333 Length: 419 100.0 7.1E-59 4.4E-62 339.4 27.5 324 1-344 1-341 (419) 56 protein:vir:1431 Length: 419 # 100.0 6.4E-59 4E-62 339.6 27.1 323 1-344 1-341 (419) 57 protein:vir:8317 Length: 409 # 100.0 1.6E-58 9.6E-62 337.5 28.3 313 1-344 32-361 (409) 58 protein:vir:3153 Length: 467 # 100.0 2E-58 1.2E-61 336.9 28.5 282 62-344 1-368 (467) 59 protein:vir:96579 Length: 576 100.0 6.7E-58 4.2E-61 334.0 31.0 334 1-344 35-432 (576) 60 protein:vir:9702 Length: 406 # 100.0 1.4E-58 8.8E-62 337.7 26.6 316 1-344 1-330 (406) 61 protein:vir:483 Length: 413 # 100.0 3.3E-58 2.1E-61 335.7 28.1 321 1-344 1-340 (413) 62 protein:vir:1266 Length: 416 # 100.0 2.4E-58 1.5E-61 336.5 27.0 323 1-344 1-340 (416) 63 protein:vir:100691 Length: 535 100.0 7.8E-58 4.8E-61 333.7 29.1 335 1-344 13-421 (535) 64 protein:vir:93943 Length: 409 100.0 7.8E-58 4.9E-61 333.7 28.4 320 1-344 1-337 (409) 65 protein:vir:102727 Length: 945 100.0 2.1E-57 1.3E-60 331.3 27.9 332 1-344 76-445 (945) 66 protein:vir:81095 Length: 416 100.0 2.7E-57 1.7E-60 330.7 28.1 318 1-344 1-337 (416) 67 protein:vir:4598 Length: 416 # 100.0 2.7E-57 1.7E-60 330.7 28.1 318 1-344 1-337 (416) 68 protein:vir:94426 Length: 409 100.0 7.1E-57 4.4E-60 328.4 29.2 320 1-344 1-337 (409) 69 protein:vir:96980 Length: 409 100.0 1.3E-56 7.9E-60 327.0 28.7 320 1-344 1-337 (409) 70 protein:vir:98853 Length: 219 100.0 1.4E-57 8.9E-61 332.2 22.9 210 134-343 1-219 (219) 71 protein:vir:81218 Length: 423 100.0 1.4E-56 8.8E-60 326.8 28.3 325 1-344 1-358 (423) 72 protein:vir:8418 Length: 409 # 100.0 1.2E-56 7.3E-60 327.2 26.8 325 1-344 1-356 (409) 73 protein:vir:2683 Length: 412 # 100.0 6.3E-56 3.9E-59 323.2 29.7 324 1-344 1-340 (412) 74 protein:vir:4854 Length: 386 # 100.0 2.6E-55 1.6E-58 319.8 29.7 316 1-344 1-345 (386) 75 protein:vir:7407 Length: 392 # 100.0 1.2E-55 7.4E-59 321.7 27.5 324 1-344 3-338 (392) 76 protein:vir:100187 Length: 385 100.0 2.4E-55 1.5E-58 320.1 28.5 315 1-344 1-332 (385) 77 protein:vir:4828 Length: 382 # 100.0 1.1E-54 6.8E-58 316.4 28.4 311 1-344 1-342 (382) 78 protein:vir:1023 Length: 392 # 100.0 1E-54 6.5E-58 316.5 27.4 323 1-344 3-338 (392) 79 protein:vir:3989 Length: 392 # 100.0 1E-54 6.5E-58 316.5 27.4 323 1-344 3-338 (392) 80 protein:vir:3843 Length: 397 # 100.0 2E-54 1.3E-57 314.9 28.2 312 1-344 1-329 (397) 81 protein:vir:9359 Length: 348 # 100.0 2.3E-54 1.5E-57 314.6 28.5 270 52-344 1-276 (348) 82 protein:vir:100882 Length: 383 100.0 5.6E-54 3.4E-57 312.5 29.0 313 1-344 1-332 (383) 83 protein:vir:4995 Length: 384 # 100.0 3.9E-54 2.4E-57 313.4 26.9 326 1-344 1-339 (384) 84 protein:vir:78641 Length: 278 100.0 4.5E-53 2.8E-56 307.5 28.2 270 52-344 1-276 (278) 85 protein:vir:960 Length: 413 # 100.0 1.2E-52 7.2E-56 305.3 28.3 319 1-344 4-347 (413) 86 protein:vir:4952 Length: 386 # 100.0 2E-52 1.2E-55 304.0 28.2 308 1-344 1-331 (386) 87 protein:vir:79772 Length: 648 100.0 5.5E-52 3.4E-55 301.6 30.0 335 1-344 1-415 (648) 88 protein:vir:104259 Length: 403 100.0 1.4E-52 8.6E-56 304.9 25.0 320 1-344 1-335 (403) 89 protein:vir:95378 Length: 406 100.0 5.7E-51 3.6E-54 296.0 25.3 316 1-344 1-332 (406) 90 protein:vir:80134 Length: 403 100.0 1.7E-50 1.1E-53 293.4 23.8 311 1-344 1-329 (403) 91 protein:vir:6210 Length: 394 # 100.0 1.8E-49 1.1E-52 287.8 26.0 312 1-344 1-324 (394) 92 protein:vir:101289 Length: 395 100.0 1.1E-45 6.9E-49 267.1 25.4 305 1-344 1-318 (395) 93 protein:vir:100650 Length: 395 100.0 1.1E-45 6.9E-49 267.1 25.4 305 1-344 1-318 (395) 94 protein:vir:9507 Length: 395 # 100.0 1.1E-45 6.9E-49 267.1 25.4 305 1-344 1-318 (395) 95 protein:vir:95965 Length: 385 100.0 1.9E-44 1.2E-47 260.2 25.9 307 1-344 1-320 (385) 96 protein:vir:78310 Length: 376 100.0 6E-43 3.7E-46 252.1 24.8 309 1-344 1-320 (376) 97 protein:vir:9641 Length: 395 # 100.0 3.1E-41 1.9E-44 242.7 24.1 309 1-344 1-333 (395) 98 protein:vir:98643 Length: 395 100.0 2.2E-41 1.4E-44 243.5 22.5 315 1-344 1-330 (395) 99 protein:vir:4089 Length: 395 # 100.0 1.8E-40 1.1E-43 238.5 23.6 309 1-344 1-322 (395) 100 protein:vir:93867 Length: 378 100.0 1.8E-39 1.1E-42 233.1 20.5 289 1-344 1-304 (378) 101 protein:vir:1661 Length: 378 # 100.0 5.5E-39 3.4E-42 230.3 20.9 289 1-344 1-304 (378) 102 protein:vir:94002 Length: 378 100.0 7.4E-39 4.6E-42 229.6 21.5 289 1-344 1-304 (378) 103 protein:vir:858 Length: 378 # 100.0 1.5E-36 9.4E-40 217.0 21.1 286 1-344 1-304 (378) 104 protein:vir:94869 Length: 378 100.0 1.2E-36 7.6E-40 217.5 20.4 286 1-344 1-304 (378) 105 protein:vir:4698 Length: 251 # 100.0 3.8E-36 2.3E-39 214.8 19.3 231 1-254 1-251 (251) 106 protein:vir:5249 Length: 437 # 99.6 9.2E-16 5.7E-19 103.0 22.5 304 1-344 1-356 (437) 107 protein:vir:79647 Length: 435 99.2 1.1E-11 6.7E-15 80.7 19.9 303 1-344 5-363 (435) 108 protein:vir:94049 Length: 532 99.2 4E-11 2.5E-14 77.6 22.7 326 1-344 23-421 (532) 109 protein:vir:79511 Length: 448 99.1 2.1E-10 1.3E-13 73.6 22.7 316 1-344 1-379 (448) 110 protein:vir:77981 Length: 448 99.1 2.2E-10 1.3E-13 73.6 22.1 323 1-344 1-379 (448) 111 protein:vir:107742 Length: 537 99.1 4.1E-10 2.5E-13 72.0 23.3 318 1-344 25-434 (537) 112 protein:vir:103860 Length: 528 99.0 3E-09 1.9E-12 67.3 25.4 322 1-344 1-372 (528) 113 protein:vir:80040 Length: 461 99.0 8.6E-10 5.3E-13 70.3 21.8 316 1-344 1-387 (461) 114 protein:vir:108215 Length: 469 99.0 2.9E-09 1.8E-12 67.4 24.4 314 1-344 1-382 (469) 115 protein:vir:104338 Length: 422 98.9 1.1E-09 6.6E-13 69.8 20.4 295 1-344 1-351 (422) 116 protein:vir:99232 Length: 526 98.9 1.7E-08 1.1E-11 63.2 25.0 323 1-344 1-372 (526) 117 protein:vir:107662 Length: 427 98.8 2.8E-09 1.7E-12 67.5 19.1 294 23-344 1-352 (427) 118 protein:vir:79063 Length: 491 98.8 3.9E-08 2.4E-11 61.2 25.6 314 1-344 1-354 (491) 119 protein:vir:79233 Length: 526 98.8 4.2E-08 2.6E-11 61.0 25.8 322 1-344 1-372 (526) 120 protein:vir:99563 Length: 862 98.8 1.3E-08 7.8E-12 63.9 22.3 322 1-344 39-467 (862) 121 protein:vir:389 Length: 530 # 98.8 2.6E-09 1.6E-12 67.6 18.5 323 1-344 1-435 (530) 122 protein:vir:79538 Length: 502 98.7 1E-09 6.3E-13 69.9 13.9 317 1-344 11-424 (502) 123 protein:vir:1986 Length: 512 # 98.7 8.6E-08 5.3E-11 59.3 25.4 322 1-344 1-370 (512) 124 protein:vir:107880 Length: 491 98.7 4.7E-08 2.9E-11 60.7 22.7 311 1-344 1-354 (491) 125 protein:vir:98816 Length: 446 98.7 3.1E-08 1.9E-11 61.8 20.7 328 1-344 1-406 (446) 126 protein:vir:99853 Length: 488 98.7 1.1E-07 6.7E-11 58.8 23.3 311 1-344 1-346 (488) 127 protein:vir:96738 Length: 505 98.6 5.4E-09 3.4E-12 65.9 14.6 319 1-344 1-434 (505) 128 protein:vir:95542 Length: 548 98.5 6.1E-09 3.8E-12 65.6 13.1 319 1-344 1-428 (548) 129 protein:vir:3420 Length: 533 # 98.5 2.5E-08 1.5E-11 62.3 15.7 318 1-344 1-438 (533) 130 protein:vir:6382 Length: 553 # 98.4 9E-08 5.6E-11 59.2 16.8 321 1-344 1-472 (553) 131 protein:vir:96068 Length: 765 98.4 2.6E-07 1.6E-10 56.7 18.2 324 1-344 19-439 (765) 132 protein:vir:78161 Length: 355 98.1 3.2E-06 2E-09 50.7 19.8 224 112-344 1-252 (355) 133 protein:vir:10321 Length: 495 98.0 3.2E-06 2E-09 50.7 17.3 319 1-344 1-421 (495) 134 protein:vir:95254 Length: 488 97.7 2.5E-05 1.5E-08 45.8 19.9 313 1-344 1-402 (488) 135 protein:vir:9568 Length: 410 # 97.7 3.1E-05 1.9E-08 45.3 18.0 285 1-344 1-358 (410) 136 protein:vir:1634 Length: 409 # 97.4 6.5E-05 4E-08 43.5 17.9 282 35-344 1-382 (409) 137 protein:vir:9751 Length: 422 # 97.2 0.00013 8E-08 41.9 19.0 284 35-344 1-371 (422) 138 protein:vir:94742 Length: 409 97.1 0.00017 1.1E-07 41.2 20.8 289 35-344 1-371 (409) 139 protein:vir:105782 Length: 449 96.9 0.00026 1.6E-07 40.2 15.5 314 1-344 1-383 (449) 140 protein:vir:80680 Length: 441 96.6 0.00045 2.8E-07 38.9 22.9 289 1-344 31-374 (441) 141 protein:vir:4073 Length: 279 # 96.4 0.0002 1.2E-07 40.9 11.5 257 1-344 1-261 (279) 142 protein:vir:99522 Length: 470 95.9 0.0013 7.9E-07 36.5 22.0 290 1-344 59-400 (470) 143 protein:vir:98444 Length: 434 95.8 0.0014 9E-07 36.2 16.4 288 34-344 1-360 (434) 144 protein:vir:102426 Length: 631 95.6 0.0016 1E-06 35.9 12.9 333 1-344 1-422 (631) 145 protein:vir:5839 Length: 533 # 95.5 0.0019 1.2E-06 35.5 17.8 336 1-344 1-406 (533) 146 protein:vir:106716 Length: 698 95.1 0.0028 1.7E-06 34.6 16.2 319 1-344 1-461 (698) 147 protein:vir:7768 Length: 484 # 95.1 0.0029 1.8E-06 34.5 17.1 305 1-344 1-395 (484) 148 protein:vir:99916 Length: 504 94.7 0.0036 2.3E-06 34.0 19.9 307 1-344 29-408 (504) 149 protein:vir:8654 Length: 629 # 94.3 0.0047 2.9E-06 33.3 12.9 334 1-344 1-417 (629) 150 protein:vir:3609 Length: 452 # 93.8 0.0063 3.9E-06 32.7 23.7 285 1-344 50-380 (452) 151 protein:vir:99088 Length: 629 93.7 0.0067 4.1E-06 32.5 12.6 334 1-344 1-417 (629) 152 protein:vir:78589 Length: 695 93.5 0.0074 4.6E-06 32.3 17.6 318 1-344 1-461 (695) 153 protein:vir:106491 Length: 646 93.0 0.009 5.6E-06 31.8 13.0 333 1-344 1-396 (646) 154 protein:vir:8184 Length: 474 # 92.2 0.012 7.6E-06 31.1 20.0 316 1-344 12-405 (474) 155 protein:vir:2427 Length: 485 # 91.8 0.014 8.7E-06 30.8 20.8 300 1-344 40-396 (485) 156 protein:vir:107517 Length: 639 91.8 0.014 8.7E-06 30.7 13.8 336 1-344 1-422 (639) 157 protein:vir:97900 Length: 639 91.8 0.014 8.7E-06 30.7 13.8 336 1-344 1-422 (639) 158 protein:vir:95806 Length: 440 91.3 0.017 1E-05 30.3 21.9 299 1-344 21-374 (440) 159 protein:vir:97447 Length: 474 90.9 0.019 1.2E-05 30.1 22.1 288 1-344 54-400 (474) 160 protein:vir:94498 Length: 474 90.9 0.019 1.2E-05 30.1 22.1 288 1-344 54-400 (474) 161 protein:vir:93747 Length: 472 90.5 0.021 1.3E-05 29.8 23.1 284 1-344 57-397 (472) 162 protein:vir:2732 Length: 501 # 89.3 0.027 1.7E-05 29.2 20.7 302 1-344 67-420 (501) 163 protein:vir:96494 Length: 501 88.5 0.032 2E-05 28.8 21.4 303 1-344 67-420 (501) 164 protein:vir:101541 Length: 694 88.3 0.033 2.1E-05 28.7 17.8 314 1-344 1-460 (694) 165 protein:vir:38 Length: 496 # N 88.1 0.034 2.1E-05 28.6 18.7 297 1-344 55-430 (496) 166 protein:vir:96366 Length: 511 88.0 0.035 2.2E-05 28.6 21.5 302 1-344 74-431 (511) 167 protein:vir:78805 Length: 511 88.0 0.035 2.2E-05 28.6 21.5 302 1-344 74-431 (511) 168 protein:vir:9306 Length: 511 # 87.9 0.036 2.2E-05 28.5 22.5 302 1-344 74-431 (511) 169 protein:vir:104082 Length: 485 87.7 0.037 2.3E-05 28.4 15.2 294 1-344 40-396 (485) 170 protein:vir:3964 Length: 453 # 87.5 0.039 2.4E-05 28.3 24.7 286 1-344 50-381 (453) 171 protein:vir:733 Length: 453 # 87.4 0.039 2.4E-05 28.3 23.2 291 1-344 50-386 (453) 172 protein:vir:105889 Length: 474 87.3 0.04 2.5E-05 28.3 22.9 285 1-344 51-404 (474) 173 protein:vir:94101 Length: 474 87.3 0.04 2.5E-05 28.3 22.9 285 1-344 51-404 (474) 174 protein:vir:4898 Length: 502 # 86.5 0.045 2.8E-05 28.0 22.1 303 1-344 68-421 (502) 175 protein:vir:95113 Length: 474 85.9 0.049 3.1E-05 27.7 23.2 285 1-344 54-400 (474) 176 protein:vir:96266 Length: 474 84.4 0.061 3.8E-05 27.3 21.2 287 1-344 60-400 (474) 177 protein:vir:95899 Length: 474 84.4 0.061 3.8E-05 27.3 21.2 287 1-344 60-400 (474) 178 protein:vir:79043 Length: 479 84.1 0.063 3.9E-05 27.2 23.3 308 1-344 32-413 (479) 179 protein:vir:105292 Length: 478 84.1 0.063 3.9E-05 27.2 22.7 288 1-344 53-405 (478) 180 protein:vir:103951 Length: 511 84.0 0.064 4E-05 27.1 22.2 302 1-344 74-431 (511) 181 protein:vir:103219 Length: 201 83.7 0.029 1.8E-05 29.0 7.1 119 208-344 1-131 (201) 182 protein:vir:106639 Length: 481 83.2 0.07 4.4E-05 26.9 23.3 309 1-344 43-409 (481) 183 protein:vir:94805 Length: 492 82.2 0.079 4.9E-05 26.6 22.6 290 1-344 77-417 (492) 184 protein:vir:107112 Length: 478 81.9 0.082 5.1E-05 26.5 22.6 291 1-344 59-405 (478) 185 protein:vir:96240 Length: 511 81.7 0.083 5.2E-05 26.5 21.7 301 1-344 74-431 (511) 186 protein:vir:99781 Length: 511 81.6 0.084 5.2E-05 26.5 20.4 300 1-344 74-431 (511) 187 protein:vir:78537 Length: 480 81.5 0.085 5.3E-05 26.5 21.2 285 35-344 1-387 (480) 188 protein:vir:5961 Length: 503 # 80.7 0.092 5.7E-05 26.3 22.0 297 1-344 60-417 (503) 189 protein:vir:2341 Length: 488 # 80.5 0.094 5.8E-05 26.2 16.3 298 10-344 1-402 (488) 190 protein:vir:96839 Length: 474 80.2 0.097 6E-05 26.1 23.1 288 1-344 59-404 (474) 191 protein:vir:9871 Length: 429 # 80.0 0.099 6.1E-05 26.1 22.7 280 1-344 34-363 (429) 192 protein:vir:96179 Length: 468 79.6 0.1 6.4E-05 26.0 22.7 286 1-344 53-405 (468) 193 protein:vir:102950 Length: 471 79.6 0.1 6.4E-05 26.0 21.2 300 1-344 38-406 (471) 194 protein:vir:97336 Length: 492 79.3 0.11 6.6E-05 25.9 21.9 285 1-344 77-417 (492) 195 protein:vir:4223 Length: 486 # 78.2 0.12 7.3E-05 25.7 19.9 295 1-344 40-396 (486) 196 protein:vir:2500 Length: 501 # 77.8 0.12 7.5E-05 25.6 16.5 286 1-344 23-414 (501) 197 protein:vir:97171 Length: 512 77.5 0.12 7.7E-05 25.6 22.2 303 1-344 74-432 (512) 198 protein:vir:99072 Length: 479 76.8 0.13 8.2E-05 25.4 17.2 291 25-344 1-384 (479) 199 protein:vir:106027 Length: 629 75.5 0.15 9E-05 25.2 14.0 330 1-344 1-413 (629) 200 protein:vir:1236 Length: 483 # 75.1 0.15 9.4E-05 25.1 23.6 287 1-344 68-408 (483) 201 protein:vir:106571 Length: 499 71.9 0.19 0.00012 24.5 23.2 284 1-344 49-406 (499) 202 protein:vir:3648 Length: 695 # 71.1 0.2 0.00012 24.4 17.5 320 1-344 46-461 (695) 203 protein:vir:7987 Length: 456 # 69.3 0.22 0.00014 24.1 15.4 292 1-344 32-390 (456) 204 protein:vir:105461 Length: 470 67.7 0.25 0.00015 23.9 23.5 274 1-344 38-403 (470) 205 protein:vir:4782 Length: 522 # 67.1 0.26 0.00016 23.8 16.3 287 1-344 50-448 (522) 206 protein:vir:5665 Length: 511 # 63.5 0.32 0.0002 23.3 19.1 327 1-344 5-443 (511) 207 protein:vir:102602 Length: 456 55.5 0.48 0.0003 22.3 18.2 308 1-344 1-390 (456) 208 protein:vir:105819 Length: 456 55.5 0.48 0.0003 22.3 18.2 308 1-344 1-390 (456) 209 protein:vir:78227 Length: 480 49.9 0.63 0.00039 21.7 22.1 288 35-344 1-387 (480) 210 protein:vir:80959 Length: 499 49.4 0.64 0.0004 21.6 18.9 300 1-344 49-433 (499) 211 protein:vir:78907 Length: 518 41.0 0.95 0.00059 20.7 19.2 293 1-344 29-449 (518) 212 protein:vir:94709 Length: 522 38.6 1.1 0.00066 20.4 19.6 313 1-344 19-424 (522) 213 protein:vir:98265 Length: 524 28.4 1.8 0.0011 19.2 20.2 326 1-344 17-453 (524) 214 protein:vir:101806 Length: 516 28.1 1.8 0.0011 19.2 19.4 330 1-344 3-446 (516) 215 protein:vir:101189 Length: 516 28.1 1.8 0.0011 19.2 19.4 330 1-344 3-446 (516) 216 protein:vir:101418 Length: 569 25.9 2 0.0012 18.9 11.8 335 1-344 18-468 (569) 217 protein:vir:94546 Length: 506 21.4 2.6 0.0016 18.3 21.3 292 1-344 57-430 (506) 218 protein:vir:1587 Length: 508 # 21.0 2.7 0.0017 18.2 20.0 282 1-344 51-440 (508) 219 protein:vir:3361 Length: 535 # 20.1 2.8 0.0018 18.1 18.5 306 1-344 44-429 (535) No 1 >protein:vir:5691 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839850;genbank:gi:30065705;genbank:GeneID:1260599 Probab=100.00 E-value=6.2e-113 Score=635.75 Aligned_cols=344 Identities=100% Similarity=1.516 Sum_probs=336.7 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) |||||++++++..++++++++++++|+||||+||+++++++||+||+.||+||+|||++.+|++++++++||++||++|+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~s~i~~k~ 80 (344) T protein:vir:56 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) T ss_pred CCCCCCCCCchhhHHhhcCCCceEEEEcCCceeecCcchhhhHHHhhhcCccccCCCCHHHHHHHHhhhhhhCccceehh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCceeEEEcCCceEEEEecccE Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPGSV 160 (344) Q Consensus 81 n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eI 160 (344) |+++.+++|||++++..|++++.|++++||||++++||..|++++|+|+++.+|++..+++.||++..+++.+.|+++|| T Consensus 81 n~l~~~~~Pnp~~t~~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~v~~~~~~~~~~~~~~~g~~~~~~~~dI 160 (344) T protein:vir:56 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPGSV 160 (344) T ss_pred hhHHhhcCCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCceeEEeecCCEEEEEecCCeEEEEcCccE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccc Q lcl|Aclame:pro 161 FHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNL 240 (344) Q Consensus 161 ih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~ 240 (344) ||+|.+++.+++||+|||.++++++.++.++++|+++||+||+||++||+++++.+++|+++++|++|++++|++|++.+ T Consensus 161 iHir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~Il~~~d~~ls~e~~~~lk~~~~~~~g~~~~r~l 240 (344) T protein:vir:56 161 FHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNL 240 (344) T ss_pred EEECCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCCCCccce Confidence 99999999999999999999999999999999999999999999999999999899999999999999998888888888 Q ss_pred cccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 241 FLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRI 320 (344) Q Consensus 241 ~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~i 320 (344) ++..|+|+++|++++|++.+++|+||+|+++++++|||++|||||+++|+.++++++++|+|++.+.|+++||.|++++| T Consensus 241 ~l~~p~g~~~G~~~~pis~~~~d~qf~e~k~~s~~eIa~afrVPp~llGi~~~~t~~~~n~eq~~~~f~~~tL~Pl~~~i 320 (344) T protein:vir:56 241 FLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRI 320 (344) T ss_pred EEecCCCCccceeEEEcCCChHHHHHHHHHHhhHHHHHHHhCCCHHHhccCCCCCCccccHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999988888999999999999999999999999 Q ss_pred HHHHHhhCccceeccccccccCCC Q lcl|Aclame:pro 321 REINGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 321 e~ln~~L~~~~irf~~y~l~~d~g 344 (344) |++|+||+.+++||++|+|+.|+| T Consensus 321 e~~n~~l~~~~~~F~~y~l~~~~~ 344 (344) T protein:vir:56 321 REINGWIGQEVIRFKNYSLDTDNG 344 (344) T ss_pred HHHHhhhccccccCCCccccccCC Confidence 999999999999999999999999 No 2 >protein:vir:6058 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878199;genbank:gi:33438898;genbank:GeneID:1457733 Probab=100.00 E-value=1.2e-111 Score=628.78 Aligned_cols=344 Identities=99% Similarity=1.503 Sum_probs=336.8 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) |||||+++.++.+++.+++++++.+||||||+||+++++++||+||+.||+||+||+++.+|++++|++++|++||++|+ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~~~i~~k~ 80 (344) T protein:vir:60 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) T ss_pred CCcccCCCCCchHHhhcCCcCcEEEEEcCCceeecCCcchhHHHHhhhcCccccCCCCHHHHHHHHHhhhhhccchhhhh Confidence 99999999999988888888899999999999999999999999999999999999999999999999999999999999 Q ss_pred hhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCceeEEEcCCceEEEEecccE Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPGSV 160 (344) Q Consensus 81 n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eI 160 (344) |+++.+++|||++++.+|++++.|++++||||++++||..|+|++|+|+++.+|++..+++.||++..+++.+.|+++|| T Consensus 81 n~l~~~~~Pn~~~t~~~f~~~~~d~ll~Gnay~~i~rn~~G~~~~L~~l~~~~vr~~~~~~~~~~v~~~~~~~~~~~~eI 160 (344) T protein:vir:60 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPGSV 160 (344) T ss_pred hHHHhhccCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEcCcceEEEeecCCeEEEEccCCeEEEEcCccE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccc Q lcl|Aclame:pro 161 FHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNL 240 (344) Q Consensus 161 ih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~ 240 (344) ||+|.+++.+++||+|||.++++++.++.++++|+++||+||+||++||+++++.+++|+++++|++|++++|++|++.+ T Consensus 161 iHir~~~~~~~~yGlsp~~~a~~si~l~~~a~~~~~~~f~NG~~pg~il~~~~~~ls~e~~~~ik~~~~~~~g~~~~r~~ 240 (344) T protein:vir:60 161 FHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNL 240 (344) T ss_pred EEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHHHHHHHHHHHHHhcCCCCCcce Confidence 99999999999999999999999999999999999999999999999999999899999999999999999999999999 Q ss_pred cccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 241 FLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRI 320 (344) Q Consensus 241 ~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~i 320 (344) ++..|+|+++|++|+|++.+++|+||+|+++++++|||++|||||+++|+.++++++++|+|++.+.|+++||.|++++| T Consensus 241 ~l~~p~g~~~g~~~~pis~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~L~Pl~~~~ 320 (344) T protein:vir:60 241 FLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRI 320 (344) T ss_pred EEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhcccCCCCCccccHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999988888999999999999999999999999 Q ss_pred HHHHHhhCccceeccccccccCCC Q lcl|Aclame:pro 321 REINGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 321 e~ln~~L~~~~irf~~y~l~~d~g 344 (344) |+||+|||.+++||++|+|+.||+ T Consensus 321 e~ln~~lg~~~i~F~~~~l~~~d~ 344 (344) T protein:vir:60 321 REINGWLGQEVIRFKNYSLDTDNG 344 (344) T ss_pred HHHHHhcCCcccccCccccCCCCC Confidence 999999999999999999999999 No 3 >protein:vir:2013 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046757;genbank:gi:9630328;genbank:GeneID:1261529 Probab=100.00 E-value=2e-111 Score=627.42 Aligned_cols=344 Identities=99% Similarity=1.507 Sum_probs=336.7 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) |||||+++++++.++.+++++++++||||||+||+++++++||+||+.||+||+|||++.+|+++++++++|++||++|+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~~~i~~k~ 80 (344) T protein:vir:20 1 MSKKKGKTPQPAAKTMTASGPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) T ss_pred CCcccCCCCcchhhhhhccCCceEEEEcCCceEecCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhhhhCccceehh Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCceeEEEcCCceEEEEecccE Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPGSV 160 (344) Q Consensus 81 n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eI 160 (344) |+++.+++|||++++.+|++++.|++++||||++++||..|+|++|+|+++.+|++..+++.||++..++..+.|+++|| T Consensus 81 n~l~~~~~Pn~~lt~~~f~~~~~d~ll~Gnay~~i~rn~~G~~~~L~pl~~~~vr~~~~~~~~~~~~~~~~~~~~~~~eI 160 (344) T protein:vir:20 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPGSV 160 (344) T ss_pred hhHHHhccCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEcCCceeEeeecCCEEEEEccCCeEEEEcCccE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccc Q lcl|Aclame:pro 161 FHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNL 240 (344) Q Consensus 161 ih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~ 240 (344) ||+|.+++.+++||+|||.++++++.++.++++|+++||+||+||++||+++++.+++|+++++|++|++++|.+|++.+ T Consensus 161 iHir~~~~~~~~yGls~~~~a~~si~l~~~a~~~~~~~f~NGa~p~~Il~~~d~~l~~e~~~~ik~~~~~~~g~~n~r~l 240 (344) T protein:vir:20 161 FHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNL 240 (344) T ss_pred EEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHHHHHHHHHHHHHhcCCCCccce Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999898999 Q ss_pred cccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 241 FLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRI 320 (344) Q Consensus 241 ~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~i 320 (344) +|..|+|+++|++|+|++.+++|+||+|+++++++|||++|||||+++|+.++++++++|+|++.+.|+++||.|++++| T Consensus 241 ~l~~p~g~~~gi~~~pis~~~~d~qf~e~k~~s~~eIa~af~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~l~P~~~~~ 320 (344) T protein:vir:20 241 FLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRI 320 (344) T ss_pred EEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhccCCCCCCccccHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999988888999999999999999999999999 Q ss_pred HHHHHhhCccceeccccccccCCC Q lcl|Aclame:pro 321 REINGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 321 e~ln~~L~~~~irf~~y~l~~d~g 344 (344) |++|+|||.+++||+.|+|+.++- T Consensus 321 e~in~~lg~~~i~F~~~~l~~~d~ 344 (344) T protein:vir:20 321 REINGWLGQEVIRFKNYSLDTDND 344 (344) T ss_pred HHHHHhcCCcccccCccccccCCC Confidence 999999999999999999999988 No 4 >protein:vir:98567 Length: 340 # NCBI annotation: gp1 # Family: family:all:196 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958056;genbank:gi:41057353;genbank:GeneID:2744238 Probab=100.00 E-value=2.7e-109 Score=615.83 Aligned_cols=340 Identities=77% Similarity=1.273 Sum_probs=326.4 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) |||||+++.+. ..++++.++++||||||+||+++++++||+||+.||+||+|||++.+|++++++++||++||++|+ T Consensus 1 m~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~la~l~~a~~~h~s~i~~k~ 77 (340) T protein:vir:98 1 MSKRKPRKAVA---MTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKR 77 (340) T ss_pred CCCCCCCcccc---ccccCccceeEEEcCCceeecCcchhhhhhhhhhcCceecCCCCHHHHHHHHHhccccchhhhhhh Confidence 99888664332 233444568999999999999999999999999999999999999999999999999999999999 Q ss_pred hhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCceeEEEcCCceEEEEecccE Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPGSV 160 (344) Q Consensus 81 n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eI 160 (344) |+++.+++|||++++.+|++++.|++++||||++++||..|++++|+|+++.+|++..+++.||++..+++.+.|+++|| T Consensus 78 n~l~~~~~Pn~~lt~~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~~~~~~~~~~~~~~~~~~~~~eV 157 (340) T protein:vir:98 78 NVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVENFTQPHEFAPDTV 157 (340) T ss_pred hHHhhccCCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCceEEEcccCcEEEEEecCCeEEEEccccE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccc Q lcl|Aclame:pro 161 FHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNL 240 (344) Q Consensus 161 ih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~ 240 (344) ||+|.+++.+++||+|||.++++++.++.++++|+++||+||+||+|||+++++.+++++++++|++|++++|.+|++++ T Consensus 158 iHir~~~~~~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~NGa~pg~il~~~~~~ls~e~~~~lk~~~~~~~G~~n~~~~ 237 (340) T protein:vir:98 158 FHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNL 237 (340) T ss_pred EEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCccccCce Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 241 FLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRI 320 (344) Q Consensus 241 ~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~i 320 (344) +|+.++++++|++|+|++.+++|+||+|+++++++|||++|||||+++|+.++++++++|+|++.+.|+++||.|++++| T Consensus 238 ~vl~~~g~~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~Pl~~~i 317 (340) T protein:vir:98 238 FFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRF 317 (340) T ss_pred eEecCCCCccceEEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhcccCCCCCccccHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999988888999999999999999999999999 Q ss_pred HHHHHhhCccceeccccccccCC Q lcl|Aclame:pro 321 REINGWIGQEVIRFKNYSLDTDN 343 (344) Q Consensus 321 e~ln~~L~~~~irf~~y~l~~d~ 343 (344) |++|+||+.+++||++|.|.-.+ T Consensus 318 ee~n~~L~~e~~rF~~~~l~~~d 340 (340) T protein:vir:98 318 REVNDWLGMEVIRFKEYTLDNPE 340 (340) T ss_pred HHHHhcccccccccCccccccCC Confidence 99999999999999999999888 No 5 >protein:vir:79207 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111036;genbank:gi:134288763;genbank:GeneID:4960726 Probab=100.00 E-value=3.7e-108 Score=609.59 Aligned_cols=344 Identities=54% Similarity=0.989 Sum_probs=327.4 Q ss_pred CCCCCCCCCCcc-----hhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPA-----AKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSP 75 (344) Q Consensus 1 m~~~~~~~~~~~-----~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~ 75 (344) |||||++++... .++.+++..++.+||||||+||+++++++||++|+.||+||+|||++.+|+++++++++|++| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~~~~~h~~~ 80 (351) T protein:vir:79 1 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSSA 80 (351) T ss_pred CCCCCCCCCCCCCCCCchhhhhcccceeEEEEcCCceeecCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhHhhhhh Confidence 999998765443 233444456789999999999999999999999999999999999999999999999999999 Q ss_pred hhhcchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCceeEEEcCCceEEEE Q lcl|Aclame:pro 76 IYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAF 155 (344) Q Consensus 76 i~~k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (344) |++|+|+++.+++|||++++..|++++.|++++||||++++||..|++++|+|+++.+|++..+.+.||++..+++.+.| T Consensus 81 l~~k~n~l~~~~~Pnp~~t~~~f~~~v~d~ll~Gnay~~~~r~~~G~~~~L~~l~~~~v~~~~~~~~~~~~~~~g~~~~~ 160 (351) T protein:vir:79 81 LFFKANVLASTFRPHRWLSRHAFERWALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFSGFVYVNGWQERHEF 160 (351) T ss_pred hhhhhhHHhhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCCEEEEEEeCCcceeeeecCCeEEEEecCceEEEE Confidence 99999999999999999999989999999999999999999999999999999999999999999999999999999999 Q ss_pred ecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 156 APGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRN 235 (344) Q Consensus 156 ~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~ 235 (344) +++||||+|.+++.+++||+|||.++++++.++.++++|+++||+||+||++||+++++.+++|+++++|++|++++|.+ T Consensus 161 ~~~eIihir~~~~~~~~yGl~~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~il~~~~~~ls~e~~~~lk~~~~~~~G~~ 240 (351) T protein:vir:79 161 EPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTDAAQKQDDVDNMRDALKNAKGPG 240 (351) T ss_pred cCccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCcc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 236 NFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIP 315 (344) Q Consensus 236 n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P 315 (344) |+++++|+.++++++|++|+|++.+++|+||+|+++++++|||++|||||.++|+.++++++++|+|++.+.|+++||.| T Consensus 241 N~~~~~v~~~~g~~~gi~~~pl~~~~~d~ef~e~k~~s~~eI~~a~~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~l~P 320 (351) T protein:vir:79 241 NFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRP 320 (351) T ss_pred ccCceeEecCCCCccceEEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999888899999999999999999999 Q ss_pred HHHHHHHHHHhhCccceeccccccccCCC Q lcl|Aclame:pro 316 LQDRIREINGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 316 ~~~~ie~ln~~L~~~~irf~~y~l~~d~g 344 (344) ++++||++|+||+.++++|++|.|.-.+- T Consensus 321 l~~~ie~ln~~lg~~~~~F~~~~llr~d~ 349 (351) T protein:vir:79 321 LQARFAELNDWLGDEVVTFDDYEIPPAPV 349 (351) T ss_pred HHHHHHHHHhhcCcceeeeChhhhccccc Confidence 99999999999999999999998766555 No 6 >protein:vir:103971 Length: 376 # NCBI annotation: pbsx family phage portal protein # Family: family:all:196 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293752;genbank:gi:72537722;genbank:GeneID:3608098 Probab=100.00 E-value=6.1e-108 Score=608.38 Aligned_cols=344 Identities=54% Similarity=0.998 Sum_probs=328.2 Q ss_pred CCCCCCCCCCcchh-----hccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAK-----TMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSP 75 (344) Q Consensus 1 m~~~~~~~~~~~~~-----~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~ 75 (344) |||||+++++.... ..+++..++.+||||||+||+++++++||++|++||+||+|||++.+|+++++++++|++| T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fg~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~La~~~~~~~~h~s~ 105 (376) T protein:vir:10 26 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSSA 105 (376) T ss_pred chhccCCCcccchhhhhHhhhccCcceeEEEEcCCceeccCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhHHhhhh Confidence 99999887654432 2244445789999999999999999999999999999999999999999999999999999 Q ss_pred hhhcchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCceeEEEcCCceEEEE Q lcl|Aclame:pro 76 IYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAF 155 (344) Q Consensus 76 i~~k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (344) |++|+|+++.+++|||++++..|++++.|++++||||++++||..|+|++|+|+++.+|++..+++.|+++..+++.+.| T Consensus 106 l~~k~n~l~~~~~Pnp~lT~~~f~~~v~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~d~~~~~~~~~~~~~~~~ 185 (376) T protein:vir:10 106 LFFKANVLASTFRPHRWLSRHAFERWALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFNGFVYVNGWQERHEF 185 (376) T ss_pred HHHHhHHHHhccCCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCCEEEEEEeCCcceEEEeeCCeEEEEEcCCeEEEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 156 APGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRN 235 (344) Q Consensus 156 ~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~ 235 (344) +++||||+|.+++.+++||+|||.++++++.++.++++|+++||+||+||+|||+++|+.+++|+++++|++|++++|.+ T Consensus 186 ~~~eViHir~~~~~~~~yGls~~~~a~~si~l~~aa~~f~~~~f~NGa~pggIl~~~d~~l~~e~~~~lr~~~~~~~G~~ 265 (376) T protein:vir:10 186 EPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTDAAQKQDDVDNMRDALKNAKGPG 265 (376) T ss_pred ccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCcc Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999 Q ss_pred ccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 236 NFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIP 315 (344) Q Consensus 236 n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P 315 (344) |+++++|+.++|+++|++|+|++++++|+||+|+++++++|||++|||||.++|+.++++++|+|+|++.+.|+++||.| T Consensus 266 N~~~~~vl~~~g~~~Gi~~~pls~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~sn~eq~~~~f~~~~L~P 345 (376) T protein:vir:10 266 NFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRP 345 (376) T ss_pred ccCceeEecCCCCccceEEEEccCCHHHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999888889999999999999999999 Q ss_pred HHHHHHHHHHhhCccceeccccccccCCC Q lcl|Aclame:pro 316 LQDRIREINGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 316 ~~~~ie~ln~~L~~~~irf~~y~l~~d~g 344 (344) ++++||++|+||+.++++|++|.|.-.+- T Consensus 346 l~~~ieeln~~L~~~~~~F~~~~Llr~d~ 374 (376) T protein:vir:10 346 LQARFAELNDWLGEEVVRFDDYEIPPAPV 374 (376) T ss_pred HHHHHHHHHhhccccccccChhHhhcccc Confidence 99999999999999999999998876666 No 7 >protein:vir:1150 Length: 350 # NCBI annotation: predicted capsid packaging protein # Family: family:all:196 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490599;genbank:gi:17313219;genbank:GeneID:927315 Probab=100.00 E-value=1.1e-107 Score=607.04 Aligned_cols=342 Identities=50% Similarity=0.852 Sum_probs=326.4 Q ss_pred CCCCCCCCCCcc--------hhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPA--------AKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHH 72 (344) Q Consensus 1 m~~~~~~~~~~~--------~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~ 72 (344) ||||||+.++.. ++..+.+++++++||||||+||+++++++||+|||.||+||+|||++.+|+++++++++| T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~y~~~~~~~~~~~pp~~~~~la~~~~~~~~h 80 (350) T protein:vir:11 1 MSKRRSHRRQQPVTVQSAQEGEFIPRQGGRAEAFTFGDPMPVLDGRGILDYLECWPNGRWYEPPLSMEGLAKSVGSSVYL 80 (350) T ss_pred CCccccCCCcCccccCCcchhhhccccccceEEEEeCCceeecCcchhhHHHHHhhcCccccCCCCHHHHHHHHhhhhhh Confidence 999998765432 334455566789999999999999999999999999999999999999999999999999 Q ss_pred hhhhhhcchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCceeEEEcCCceE Q lcl|Aclame:pro 73 SSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEP 152 (344) Q Consensus 73 ~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~~~~~~~~~~~ 152 (344) ++||++|+|+++.+++|||++++..|++++.|++++||||++++||..|++++|+|+++.+|++..+++.||++..++.. T Consensus 81 ~~~l~~k~n~l~~~~~Pn~~~t~~~f~~~v~d~ll~Gnay~~~~rn~~G~~~~L~~l~~~~vr~~~~~~~~~~~~~~~~~ 160 (350) T protein:vir:11 81 QSGLKFKRNMLAKTFIPHRLLSRATFEQFSLDWLTFGSAYLEQPRSRLGTRMPLQAPLAKYMRRGTDLETFYQVRSWKDE 160 (350) T ss_pred ccchhhhhhhhhhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEEcCCCCEEEEEEeCCceeEeeecCCeEEEEeeCCeE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhh Q lcl|Aclame:pro 153 TAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSK 232 (344) Q Consensus 153 ~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~ 232 (344) +.|+++||||+|.+++.+++||+|||.++++++.++.++++|+++||+||+||+|||+++++.+++|+++++++.|++++ T Consensus 161 ~~~~~~eVihir~~~~~~~~yGls~~~~a~~si~l~~~a~~~~~~~f~NGa~~~gil~~~~~~ls~e~~~~l~~~~~~~~ 240 (350) T protein:vir:11 161 HEFEKGSVIQLREADINQEIYGVPEWFCALQSALLNESATLFRRKYYNNGSHAGFILYMTDAAQNEEDIDALRTALKTAK 240 (350) T ss_pred EEECcccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhc Confidence 99999999999999999999999999999999999999999999999999999999999998999999999999999999 Q ss_pred cccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHH Q lcl|Aclame:pro 233 GRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNE 312 (344) Q Consensus 233 g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~ 312 (344) |++|+++++|+.++|+++|++++|++++++|+||+|+++++++|||++|||||+++|+.++++++++|+|++.+.|+++| T Consensus 241 G~~N~~~~~v~~~~g~~~g~~~~pl~~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~ 320 (350) T protein:vir:11 241 GPGNFRNLFVYAPNGKKEGIQLIPVSEVAAKDEFGSIKNISRDDQLAGLRVYPQLMGVVPQNAGGFGSISDAAAVWASLE 320 (350) T ss_pred CccccCceeeecCCCCccceEEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcCCHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999999999 Q ss_pred HHHHHHHHHHHHHhhCccceeccccccccC Q lcl|Aclame:pro 313 LIPLQDRIREINGWIGQEVIRFKNYSLDTD 342 (344) Q Consensus 313 l~P~~~~ie~ln~~L~~~~irf~~y~l~~d 342 (344) |.|++++||++|+||+++++||++|.+.-= T Consensus 321 L~P~~~~ie~ln~~l~~~~~~F~~~~~~~l 350 (350) T protein:vir:11 321 LAPMQTRLQQVNEMIGEEVVRFAQFDAPGL 350 (350) T ss_pred HHHHHHHHHHHHhhcCccccccCcccccCC Confidence 999999999999999999999998876544 No 8 >protein:vir:78191 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111155;genbank:gi:134288732;genbank:GeneID:4960651 Probab=100.00 E-value=1.5e-107 Score=606.24 Aligned_cols=344 Identities=54% Similarity=0.996 Sum_probs=327.7 Q ss_pred CCCCCCCCCCcc-----hhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPA-----AKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSP 75 (344) Q Consensus 1 m~~~~~~~~~~~-----~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~ 75 (344) |||||++++... .++.+++..++.+||||||+||+++++++||++|+.||+||+|||++.+|+++++++++|++| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~~~~~h~~~ 80 (351) T protein:vir:78 1 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSSA 80 (351) T ss_pred CCCCCCCCCCCCCCCCchhhhhcccceeEEEEcCCceeecCcchhhhhhhhhccCceecCCCCHHHHHHHHhhhHhhhhh Confidence 999998765443 233444456789999999999999999999999999999999999999999999999999999 Q ss_pred hhhcchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCceeEEEcCCceEEEE Q lcl|Aclame:pro 76 IYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAF 155 (344) Q Consensus 76 i~~k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (344) |++|+|+++.+++|||+++++.|+++++|+|++||||++++||..|++++|+|+++.+|++..+.+.|+++..+++.+.| T Consensus 81 l~~k~n~l~~~~~Pn~~~t~~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~v~~~~~~~~~~~~~~~~~~~~~ 160 (351) T protein:vir:78 81 LFFKANVLASTFRPHRWLSRHAFERWALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFSGFVYVNGWQERHEF 160 (351) T ss_pred hhhhhhHHhhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCCEEEEEEecCcceEEeeeCCeEEEEecCCeEEEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 156 APGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRN 235 (344) Q Consensus 156 ~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~ 235 (344) +++||||+|.+++.+++||+|||.++++++.++.++++|+++||+||+||+|||+++++.+++|+++++|++|++++|.+ T Consensus 161 ~~~eVihir~~~~~~~~yGl~~~~~a~~si~l~~~a~~~~~~~f~NGa~pggIl~~~~~~ls~e~~~~lr~~~~~~~G~~ 240 (351) T protein:vir:78 161 APDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTDAAQKQDDVDNMRDALKNAKGPG 240 (351) T ss_pred ccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCcc Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999 Q ss_pred ccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 236 NFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIP 315 (344) Q Consensus 236 n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P 315 (344) |+++++|+.++++++|++++|++.+++|+||+|+++++++|||++|||||.++|+.++++++++|+|++.+.|+++||.| T Consensus 241 N~~~~~v~~~~g~~~g~k~~pls~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~P 320 (351) T protein:vir:78 241 NFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRP 320 (351) T ss_pred cccceeeecCCCCccceeEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999888889999999999999999999 Q ss_pred HHHHHHHHHHhhCccceeccccccccCCC Q lcl|Aclame:pro 316 LQDRIREINGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 316 ~~~~ie~ln~~L~~~~irf~~y~l~~d~g 344 (344) ++++||++|+||+.++|+|++|.|.-.+- T Consensus 321 ~~~~iee~n~~l~~~~~~F~~~~Llr~d~ 349 (351) T protein:vir:78 321 LQARFAELNDWLGDEVVRFDDYEIPPAPV 349 (351) T ss_pred HHHHHHHHHhhcCccceecChhhhccccc Confidence 99999999999999999999998876665 No 9 >protein:vir:79150 Length: 368 # NCBI annotation: bacteriophage gpQ # Family: family:all:196 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165254;genbank:gi:145708079;genbank:GeneID:5247161 Probab=100.00 E-value=7.2e-105 Score=591.51 Aligned_cols=344 Identities=59% Similarity=1.051 Sum_probs=326.3 Q ss_pred CCCCCCCCCCcch-------------hhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHh Q lcl|Aclame:pro 1 MSKKKGKTPQPAA-------------KTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLR 67 (344) Q Consensus 1 m~~~~~~~~~~~~-------------~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~ 67 (344) |||||+++.+..+ +..+++++++.+|+||||+||+++++++||++|+.+|+||+|||++.+|+++++ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~p~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~la~~~~ 80 (368) T protein:vir:79 1 MSRNKTRRAARAASAHVRTANTDAPTEHHTDRAAQAEVFSFGDPVEVLDRRELLDYVECMRMGQWYEPPMPWDGLARSFR 80 (368) T ss_pred CCccccccchhccCcccccccccCcchhhccccCceEEEEcCCceeecchhhHHHHHHHHhccchhccCcCHHHHHHHHh Confidence 9999988653322 122334556899999999999999999999999999999999999999999999 Q ss_pred hhhhhhhhhhhcchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCceeEEEc Q lcl|Aclame:pro 68 AAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVP 147 (344) Q Consensus 68 ~~~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~~~~~~ 147 (344) ++++|+++++.|+|++.++++|||++++..|++++.|++++||||++++||..|++++|+|+++.+|++..+++.||++. T Consensus 81 ~~~~h~~~~~~~~n~l~l~~~Pn~~~t~~~f~~l~~d~ll~Gnay~~~~r~~~G~~~~L~~l~~~~v~~~~~~~~~~~~~ 160 (368) T protein:vir:79 81 AAAHHSSAVYVKRNILVSTFIPHPLLSRATFERLVLDWQVFGNAYLERRENVLGGTIRLDTPLAKYVRRGLDLNTYFFVQ 160 (368) T ss_pred hccccchhhhhhcchhhhhcCCCcCCCHHHHHHHHHHHhhcCCeEEEEEEcCCCCEEEEEEeCcccceeeccCCEEEEEe Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999999 Q ss_pred CCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHH Q lcl|Aclame:pro 148 SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLREN 227 (344) Q Consensus 148 ~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~ 227 (344) .+++.++|+++||||+|.+++.+++||+|||.++++++.++.++++|+++||+||++|+|||+++++.+++|+++++|++ T Consensus 161 ~~~~~~~~~~~dIihir~~~~~~~~yGlsp~~~a~~si~l~~aa~~~~~~~~~NGa~~~gil~~~~~~l~~e~~~~lk~~ 240 (368) T protein:vir:79 161 NWQQPYTFAAGSVFHLQEPDINQEVYGLPEYLSALNATWLNESATLFRRRYYKNGSHAGFILYMTDAAQKQEDVDTLREA 240 (368) T ss_pred cCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999989999999999999 Q ss_pred HHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHH Q lcl|Aclame:pro 228 MVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKV 307 (344) Q Consensus 228 ~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~ 307 (344) |++++|.+|+++++|+.++++++|++|+|++.+++|+||+|+++++++|||++|||||.++|+.++++++++|+|++.+. T Consensus 241 ~~~~~G~~N~g~~~vl~~~g~~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~sn~e~~~~~ 320 (368) T protein:vir:79 241 MKSAKGPGNFRNLFMYAPNGKKDGIQLLPVSEVAAKDEFWNIKNVTRDDQLAAHRVPPQLMGIIPNNTGGFGDVEKAAMV 320 (368) T ss_pred HHHhcCCcccCceeEecCCCCccceeEEEcCCCHHHHHHHHHHHHhHHHHHHHhCCCHHHccccCCCCCccccHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999998888889999999999 Q ss_pred HHHHHHHHHHHHHHHHHHhhCccceeccccccccCCC Q lcl|Aclame:pro 308 FVRNELIPLQDRIREINGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 308 f~~~~l~P~~~~ie~ln~~L~~~~irf~~y~l~~d~g 344 (344) |+++||.|++++||++|+||+.+++||++|.|.-.+- T Consensus 321 f~~~~l~Pl~~~ie~ln~~l~~e~~rF~~~~l~~~D~ 357 (368) T protein:vir:79 321 FARNEVKPLQDRLLAINDWIGDEVVRFAPYALGGHDQ 357 (368) T ss_pred HHHHHHHHHHHHHHHHHhccCcceeeechhHhhcccc Confidence 9999999999999999999999999999998876555 No 10 >protein:vir:100328 Length: 346 # NCBI annotation: capsid portal protein Q # Family: family:all:196 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655469;genbank:gi:109289937;genbank:GeneID:4157371 Probab=100.00 E-value=2.8e-102 Score=577.30 Aligned_cols=341 Identities=52% Similarity=0.919 Sum_probs=317.8 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhh-ccchhhhccccHHHHHHHHhhhhhhhhhhhhc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECI-SNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVK 79 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k 79 (344) ||||+++..+... .+.+.+.+++||||||+||+++++++||+||+ .+|+||+||+++.+|+++++++++|++||++| T Consensus 1 m~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~la~l~~~~~~h~~~i~~k 78 (346) T protein:vir:10 1 MKKQLRKNLTQND--RLQPQAQTEIFSFGDPIPVLDRADILNYLECSAMYEKWYNPPMSFDGLAKSLRSSTHHESAIITK 78 (346) T ss_pred CCcccCCCCCccc--ccccccCeEEEecCCcceecCchhHHHHHHHhhcCCceEecCCCHHHHHHHHHhhhhcchhhhhh Confidence 9999876544432 23344568999999999999999999999998 48999999999999999999999999999999 Q ss_pred chhhHHhh-hcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCceeEE--EcCCceEEEEe Q lcl|Aclame:pro 80 RNILASTF-IPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWW--VPSFNEPTAFA 156 (344) Q Consensus 80 ~n~~~~~~-~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 156 (344) +|++..++ +|||++++..|++++.|++++||||++++||..|++++|+|+++.+|++..+.+.+++ ...+|+.+.|+ T Consensus 79 ~n~l~~l~~~Pn~~~t~~~f~~~~~d~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~~~~~~~~~g~~~~~~ 158 (346) T protein:vir:10 79 ANILLSTCEVDSRYLSRRDLSSFVKDYLVFGNAYFEVVRNRLGQVQRIESPLAKYVRKGLEAGQFYYVPQRFDHQEHEFA 158 (346) T ss_pred hhhHHHHHhCCCCCCCHHHHHHHHHHHHhcCCeEEEEEEcCCCcEEEEEEecCCceEEEEcCCeEEEEEEccCCeEEEEe Confidence 99999887 6999999999999999999999999999999999999999999999999887776433 34577889999 Q ss_pred cccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccc Q lcl|Aclame:pro 157 PGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNN 236 (344) Q Consensus 157 ~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n 236 (344) ++||||+|.+++.+++||+||+.++++++.++.++++|+++||+||+||++||+++++.+++|+++++|++|++++|++| T Consensus 159 ~~dIih~r~~~~~~~~~G~~~~~~a~~si~l~~~a~~~~~~~~~NG~~~~~il~~~d~~l~~e~~~~i~~~~~~~~g~~n 238 (346) T protein:vir:10 159 KGSIYHLLEPDINQDIYGLPQYLSALQSAWLNESATLFRRKYFLNGAHAGFVFYMSDASQKQEDVENIRQQLKQSKGVGN 238 (346) T ss_pred cccEEEecCCCCCCCeeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCHHHHHHHHHHHHHhcCccc Confidence 99999999999999999999999999999999999999999999999999999999989999999999999999999999 Q ss_pred cccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 237 FKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPL 316 (344) Q Consensus 237 ~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~ 316 (344) +++++|+.++++++|++++|++.+++|+||+|++++++++||++|||||.+||+.++++++++|+|++.+.|+++||+|+ T Consensus 239 ~~~~~vl~~~~~~~gi~~~pis~~~~d~qf~e~k~~~~~~I~~af~VPp~llG~~~~~~~~~s~~e~~~~~f~~~~l~P~ 318 (346) T protein:vir:10 239 FKNLFVHAPNGKKDGIQIIPIADVSAKDEFFNIKNVSRDDVLAAHRVPPQLMGIIPNNTGGFGNVADAAEVFFITEIEPL 318 (346) T ss_pred cCceeEecCCCCccceeEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999998888899999999999999999999 Q ss_pred HHHHHHHHHhhCccceecccccc-ccCC Q lcl|Aclame:pro 317 QDRIREINGWIGQEVIRFKNYSL-DTDN 343 (344) Q Consensus 317 ~~~ie~ln~~L~~~~irf~~y~l-~~d~ 343 (344) +++||++|+||+.++|||++|.| .+|+ T Consensus 319 ~~~iee~n~~L~~e~i~F~~~~ll~~~~ 346 (346) T protein:vir:10 319 QERLKEFNQWLGQEVIKFKPSKLLQRTQ 346 (346) T ss_pred HHHHHHHHhhcccceeeechhhhcccCC Confidence 99999999999999999999854 5666 No 11 >protein:vir:267 Length: 348 # NCBI annotation: putative capsid portal protein # Family: family:all:196 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536647;genbank:gi:17975125;genbank:GeneID:929081 Probab=100.00 E-value=2.3e-101 Score=572.27 Aligned_cols=336 Identities=32% Similarity=0.533 Sum_probs=306.8 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcC-CceeccCcchhhhhhhhhccc--hhhhccccHHHHHHHHhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFG-EPVPVLDRRDILDYVECISNG--RWYEPPVSFTGLAKSLRAAVHHSSPIY 77 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~p~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~~l~~~~~~~~~~~~~i~ 77 (344) |+++.+...+ +.+.+++++|||| ||+||+++++++||++|++|+ +||+||+++.+|+++++++++|++||+ T Consensus 1 ~~~~~~~~~~------~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~epp~~~~~La~l~~~n~~h~~~i~ 74 (348) T protein:vir:26 1 MTEQLIHSHT------TDGTESKSVYSFDPNPEPVDTNSWMTRYCELFYNDFDDYWEPPISLKGLAEIANANGYHGSLLK 74 (348) T ss_pred CCccccchhh------ccccCCceEEEecCCCeeecCcchHHHHHHHHhcCCCccccCCCCHHHHHHHHhhhhhhhhhHh Confidence 8865543222 2233457899999 899999999999999999876 899999999999999999999999999 Q ss_pred hcchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCceeEEEcCCceEEEEec Q lcl|Aclame:pro 78 VKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAP 157 (344) Q Consensus 78 ~k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (344) +|+|+++.+++|||++++..|++++.|++++||||++++||..|+|++|+|+++.+|++..+++ ||++..+++.+.|++ T Consensus 75 ~k~N~l~~~~~Pn~~~t~~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~~l~~~~v~~~~d~~-~~~~~~~g~~~~f~~ 153 (348) T protein:vir:26 75 ARANYVAGRFMNGGGLPMYKMNSACWDYFGLGMSAFVKIRSYLKNVIALEPLPMVHMRKRKNGD-FVQLLRNNEQKVFKA 153 (348) T ss_pred hhhhHHhhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEEcCCCcEEEEEEecCceeEeeecCc-EEEEEecCeEEEEcC Confidence 9999999999999999999999999999999999999999999999999999999999988765 666777888899999 Q ss_pred ccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhccccc Q lcl|Aclame:pro 158 GSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNF 237 (344) Q Consensus 158 ~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~ 237 (344) +||||+|.+++.+++||+|||.++++++.++.++++|+++||+||+||++||+++++.+++|+++++|++|++++|++|+ T Consensus 154 ~dIiHir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~Il~~~~~~ls~e~~~~lk~~~~~~~G~~n~ 233 (348) T protein:vir:26 154 KDVIFIPQYDPQQQIYGLPDYLGSIQSSLLNRDATLFRRRYYLNGAHMGFIFYATDPNLSEADEKALKEKIASSKGIGNF 233 (348) T ss_pred ccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCcccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 238 KNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQ 317 (344) Q Consensus 238 ~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~ 317 (344) ++++|+.|+|+++|++++|++++++|+||+|+++++++|||++|||||+++|+.++++++++|+|++.+.|+++||.|++ T Consensus 234 ~~~~vl~~~g~~~Gi~~~pis~~~~d~qf~e~k~~t~~dIa~af~VPp~llGi~~~~~~~~sn~e~~~~~f~~~~l~P~~ 313 (348) T protein:vir:26 234 RSMFVNIPNGKEKGIQLIPVGDIATKDEFERIKNITAQDIFVGHRFPAGMGGMLPQQGANVPDPLKVSQVYDFYEVIPVC 313 (348) T ss_pred cceeEEcCCCCccceeEEEccCChhHHHHHHHHHhhHHHHHHHhCCCHHHccccCCCCCccccHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999988889999999999999999999999 Q ss_pred HHHHH-HHHhhCc-cceeccccccc----cCCC Q lcl|Aclame:pro 318 DRIRE-INGWIGQ-EVIRFKNYSLD----TDNG 344 (344) Q Consensus 318 ~~ie~-ln~~L~~-~~irf~~y~l~----~d~g 344 (344) ++||+ ||++|+. +.++|+ |+|+ -++. T Consensus 314 ~~ie~~ln~~l~~~~~~~~~-fdl~~~~e~~~~ 345 (348) T protein:vir:26 314 KRFMDAVNNDPEIPDNLKLK-FNLNPGVESANG 345 (348) T ss_pred HHHHHHHhhhhCCCCccEEE-EecCcccccchh Confidence 99987 9999864 333333 2222 2222 No 12 >protein:vir:78749 Length: 337 # NCBI annotation: putative portal protein # Family: family:all:196 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285643;genbank:gi:148727149;genbank:GeneID:5220095 Probab=100.00 E-value=1.1e-98 Score=557.58 Aligned_cols=333 Identities=35% Similarity=0.602 Sum_probs=307.3 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhcc--chhhhccccHHHHHHHHhhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISN--GRWYEPPVSFTGLAKSLRAAVHHSSPIYV 78 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~l~~~~~~~~~~~~~i~~ 78 (344) |||+|+++.+.. +.+++++||||||+||+++++++||++|++| |+||+|||++.+|++++++++||++||++ T Consensus 1 m~~~~~~~~~~~------~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~La~l~~~~~~h~~~L~~ 74 (337) T protein:vir:78 1 MTKRQQQPAQAA------ASSPRPSVVFSMPEAIDPTAWMTDYTGVFYNPYGEYYQPPIDRKGLAKVARANAHHGAILMA 74 (337) T ss_pred CCCcccCccccc------ccCceeEEEecCcccccCcchhHhhhhhhhccCcceecCCCCHHHHHHHhhcchhhhhHHHh Confidence 999998754333 3345789999999999999999999999987 99999999999999999999999999999 Q ss_pred cchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCceeEEEcCCceEEEEecc Q lcl|Aclame:pro 79 KRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPG 158 (344) Q Consensus 79 k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (344) |+|.+..++.|. +++|++++.|++++||||++++||..|+|++|+|+++.+|++..+++.+| +..++..+.|+++ T Consensus 75 k~N~~~~~f~~~----~~~~~~~~~d~ll~GNay~~~~rn~~G~~~~L~pl~~~~v~~~~d~~~~~-~~~~~~~~~~~~~ 149 (337) T protein:vir:78 75 RRNMVAGRFTNQ----RATITAFVHNYLQFGDGGLLKLRNSFGQVVGLHPLSSVYLRRREDGCFVY-LQQGKPNLIYRPD 149 (337) T ss_pred hhccccccCcCc----HHHHHHHHHHHHhhCCeEEEEEECCCCcEEEEEEeCCceeEeeeCCeEEE-EEcCCceEEECCc Confidence 999888777664 57899999999999999999999999999999999999999988766554 5556778899999 Q ss_pred cEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccc Q lcl|Aclame:pro 159 SVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFK 238 (344) Q Consensus 159 eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~ 238 (344) ||||+|.+++.+++||+||+.++++++.++.++++|+++||+||+||++||+++++.+++++++++|++|++++|++|++ T Consensus 150 eIiHik~~~~~~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~NGa~p~~il~~~~~~l~~e~~~~lk~~~~~~~G~~n~~ 229 (337) T protein:vir:78 150 DVIWLAQYDPEQQVYGMPDYLGGLQSALLNQDATLFRRRYFLNGAHMGFIFYATDPNMDDDTEEEMKEMIANSKGVGNFR 229 (337) T ss_pred cEEEECCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeEEcCCCCCCHHHHHHHHHHHHHhcCccccc Confidence 99999999999999999999999999999999999999999999999999999998999999999999999999999999 Q ss_pred cccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhcccccc-ccccccHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 239 NLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPEN-VGSLGDIEKVAKVFVRNELIPLQ 317 (344) Q Consensus 239 ~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~-~~~~~n~e~~~~~f~~~~l~P~~ 317 (344) +++|+.|+|+++|++|+|++++++|+||+|+++++++|||++|||||+++|+.+++ +++++|+|++.+.|+++||.|++ T Consensus 230 ~~~v~~~~g~~~Gi~~~pis~~~~d~qfle~k~~s~~eIa~a~~VPp~llGi~~~~~~~~~~n~e~~~~~f~~~~L~P~~ 309 (337) T protein:vir:78 230 SMFVNIPDGKPDGIKLIPVGDIATKDEFAAIKGITAQDVLTAHRYPPALAGIIPTNGGGGLGDPEKYDATYARNEVLPLC 309 (337) T ss_pred ceEEEcCCCCccceeEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcccccCCCcCccccHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999998875 57889999999999999999999 Q ss_pred HHHHHHHHhhCccceeccccccccCCC Q lcl|Aclame:pro 318 DRIREINGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 318 ~~ie~ln~~L~~~~irf~~y~l~~d~g 344 (344) ++||+.+++++.++.+|..|++....+ T Consensus 310 ~~ie~~~n~~ll~~~~~~~f~~~~~~~ 336 (337) T protein:vir:78 310 ELVQDAINSAGLPRALWVTFRETIGAA 336 (337) T ss_pred HHHHHHHhhhcCChhhceecccccccc Confidence 999986666666667788888888888 No 13 >protein:vir:3780 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536820;genbank:gi:17981829;genbank:GeneID:929208 Probab=100.00 E-value=4e-98 Score=554.55 Aligned_cols=334 Identities=31% Similarity=0.487 Sum_probs=308.5 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhh--ccchhhhccccHHHHHHHHhhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECI--SNGRWYEPPVSFTGLAKSLRAAVHHSSPIYV 78 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~ 78 (344) |.+++++. ..++.+++..++++|||+||+++ +++||++|+ .+|+||+||+++.+|++++|++++|++||++ T Consensus 1 ~~~~~~~~---~~~~~~~~~~~~~~f~~~~~~~~----~~~~y~~~~~~~~~~~~epp~~~~~la~l~~~~~~h~~~i~~ 73 (345) T protein:vir:37 1 MKTNVKTD---NKKGIVIAPINDRTFSLNEISAS----PALDYVGIGFDENYNCYLPPVNRHALAKLPHQNAQHGGILHS 73 (345) T ss_pred CCCCcccc---chhhcccCcceeEEeecCCcccc----cchhhhhhhhcCCccccCCCCCHHHHHHHhhcccccccceee Confidence 87776653 22233344456899999999998 588999998 5899999999999999999999999999999 Q ss_pred cchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCceeEEEc-----CCceEE Q lcl|Aclame:pro 79 KRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVP-----SFNEPT 153 (344) Q Consensus 79 k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~~~~~~-----~~~~~~ 153 (344) |+|+++++++|||++++..|+++++|++++||||++++||..|+|++|+|+++.+|++..+++.++++. .++..+ T Consensus 74 k~n~l~~~~~Pn~~lt~~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~d~~~~~~~~~~~~~~~g~~~ 153 (345) T protein:vir:37 74 RANMVSSLYEGGKALSRMDMRALCLNLIQFGDVGLLKVRNGFGQVVRLVPLSSLYLRVRKDGGYSYLMKKSLYDTAQEIY 153 (345) T ss_pred echHHHhhccCCCCCCHHHHHHHHHHHHhcCCeEEEEEEcCCCcEEEEEEEcCceeEEEEeCCeeEEEEEeEecCCceEE Confidence 999999999999999999999999999999999999999999999999999999999999988766543 457889 Q ss_pred EEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhc Q lcl|Aclame:pro 154 AFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKG 233 (344) Q Consensus 154 ~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g 233 (344) .|+++||||+|.+++.+++||+|||.++++++.++.++++|+++||+||+||++||+++++.+++|+++++|++|++++| T Consensus 154 ~~~~~dVihir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NG~~p~~Il~~~d~~l~~e~~~~lk~~~~~~~g 233 (345) T protein:vir:37 154 RYDAKDIIFIKLYDPMQQVYGSPDYVGGIQSALLNSDATVFRRRYFSNGAHMGFILYSTDPDLTEEMEEEIARKISESKG 233 (345) T ss_pred EEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEecCCCCCHHHHHHHHHHHHHhcC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHH Q lcl|Aclame:pro 234 RNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNEL 313 (344) Q Consensus 234 ~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l 313 (344) ++|+++++|+.|+|+++|++++|++++++|+||+|++++++++||++|||||+++|+.++++++++|+|++.+.|+++|| T Consensus 234 ~~n~~~~~i~~p~g~~~G~~~~pls~~~~d~qf~e~k~~~~~dIa~a~~VPp~llGi~~~~~~~~~~~e~~~~~f~~~~l 313 (345) T protein:vir:37 234 VGNFRSMFVNIANGHPDGLKVIPIGDTGTKDEFANIKNISAQDVLTAHRFPAGLSGIIPTNTGGLGDPLKYREVYHYDEV 313 (345) T ss_pred cccccceEEEcCCCcccceEEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCccCCCCCCcccHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999 Q ss_pred HHHHHHHHHHHHhh----Cccceecccccccc Q lcl|Aclame:pro 314 IPLQDRIREINGWI----GQEVIRFKNYSLDT 341 (344) Q Consensus 314 ~P~~~~ie~ln~~L----~~~~irf~~y~l~~ 341 (344) .|++++||+.++++ +.++++|++|+|.= T Consensus 314 ~P~~~~ie~~ln~~~~~~~~~~i~F~~~~L~~ 345 (345) T protein:vir:37 314 MPLQEIIAETINQDPEIKNLLKIKFREQNFAK 345 (345) T ss_pred HHHHHHHHHHhhhhccCCCcceEEecchhhcC Confidence 99999999855555 44678999998877 No 14 >protein:vir:3743 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043484;genbank:gi:9628619;genbank:GeneID:1261113 Probab=100.00 E-value=1.2e-96 Score=546.37 Aligned_cols=334 Identities=31% Similarity=0.488 Sum_probs=306.7 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhh--ccchhhhccccHHHHHHHHhhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECI--SNGRWYEPPVSFTGLAKSLRAAVHHSSPIYV 78 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~ 78 (344) |+|.++...+ ...+....++.+|||++|+++ +++||.+|+ .+|+||+||+++.+|++++|+|+||++||++ T Consensus 1 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~y~~~~~~~~~~~~epp~~~~~la~~~~~~~~h~~~i~~ 73 (345) T protein:vir:37 1 MKTNVKTDNK---KGIVIAPINDRTFSLSEITAS----PALDYVGIGFDENYNCYLPPVNRHALAKLPHQNAQHGGILHS 73 (345) T ss_pred CCccccccch---hhhcCCCceEEEeecCCcccc----hhhcccceeeecCCccccCCCCHHHHHHHhhcchhhcchhhh Confidence 9888764322 223333346889999999874 789999998 4889999999999999999999999999999 Q ss_pred cchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCceeEEEc-----CCceEE Q lcl|Aclame:pro 79 KRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVP-----SFNEPT 153 (344) Q Consensus 79 k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~~~~~~-----~~~~~~ 153 (344) |+|+++.+++|||+++++.|++++.|++++||||++++||..|++++|+|+++.+|++..+++.+|++. .++..+ T Consensus 74 k~n~l~~~~~Pn~~~t~~~f~~~v~d~ll~Gnay~~i~rn~~G~~~~L~pl~~~~vr~~~d~~~~~~~~~~~~~~~g~~~ 153 (345) T protein:vir:37 74 RANMVSATYEGGKALSKMEMRALCLNLIQFGDVGLLKVRNGFGQVVRLVPLSSLYLRVHKDGGYSYLMKKSLYDTAQEIY 153 (345) T ss_pred hhhHHhhccCCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCCEEEEEEecCceeEEeecCCeeEEEeeeeeccCceEE Confidence 999999999999999999999999999999999999999999999999999999999999988776554 357889 Q ss_pred EEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhc Q lcl|Aclame:pro 154 AFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKG 233 (344) Q Consensus 154 ~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g 233 (344) +|+++||||+|.+++.+++||+|||.++++++.+++++++|+++||+||++|++||+++++.+++|+++++|++|++++| T Consensus 154 ~~~~~eViHir~~~~~~~~~Gl~~~~~a~~si~l~~~a~~~~~~~f~NGa~~~~Il~~t~~~l~~e~~~~lk~~~~~~~g 233 (345) T protein:vir:37 154 RYDAKDIIFIKLYDPMQQVYGSPDYVGGIQSALLNSDATVFRRRYFSNGAHMGFILYSTDPDLTEEMEEEIARKISESKG 233 (345) T ss_pred EEccccEEEEcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHHHHhcC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHH Q lcl|Aclame:pro 234 RNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNEL 313 (344) Q Consensus 234 ~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l 313 (344) ++|+++++|+.++|+++|++|+|++.+++|+||+++++++++|||++|||||.++|+.++++++++|+|++.+.|+++|| T Consensus 234 ~~n~~~~~i~~~~g~~~G~~~~pl~~~~~d~qf~e~k~~~~~dI~~a~~VPp~liGi~~~~t~~~s~~e~~~~~f~~~~l 313 (345) T protein:vir:37 234 VGNFRSMFVNIAGGHPDGLKVIPIGDTGTKDEFANIKNISAQDVLTAHRFPAGLSGIIPTNTGGLGDPLKYREVYHYDEV 313 (345) T ss_pred ccccCceeEecCCCCccceeEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhccccCCCCCcccHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999 Q ss_pred HHHHHHHHHHHHhh----Cccceecccccccc Q lcl|Aclame:pro 314 IPLQDRIREINGWI----GQEVIRFKNYSLDT 341 (344) Q Consensus 314 ~P~~~~ie~ln~~L----~~~~irf~~y~l~~ 341 (344) .|++++||+.++++ +...++|++|+|.= T Consensus 314 ~P~~~~ie~~ln~~~e~~~~~~i~F~~~~l~k 345 (345) T protein:vir:37 314 MPLQEIIAETINQDPEIKNLLKIKFREQNFAK 345 (345) T ss_pred HHHHHHHHHHhhhhhccCCcceEEECchhhcC Confidence 99999999844444 44668898888777 No 15 >protein:vir:4194 Length: 540 # NCBI annotation: putative portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071819;genbank:gi:11863102;genbank:GeneID:1257604 Probab=100.00 E-value=5.9e-69 Score=394.63 Aligned_cols=318 Identities=17% Similarity=0.196 Sum_probs=258.2 Q ss_pred EEEcCCceeccCcch------hhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcchhhHHh------------ Q lcl|Aclame:pro 25 AFTFGEPVPVLDRRD------ILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKRNILAST------------ 86 (344) Q Consensus 25 ~f~~~~p~~~~~~~~------~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~n~~~~~------------ 86 (344) +|++.-..+.+.... -...++....++||+||+++.+|+++++.+++|.+||..+++.++.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~La~~~~~n~~v~scI~~ia~~ia~~~~~i~~~~~~~~ 80 (540) T protein:vir:41 1 MFNYHLSIKSLEKYRAIKGDTDSQALKEDRFEEYVEPKVHPLVLLSLLQVNPYHASACSIKANDILRTGYLIDGDDGGVE 80 (540) T ss_pred CCCcccChhhccchhhhhccccccccccCCCCccccCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCceEecCccchh Confidence 333333322222110 01111222345799999999999999999999999999998877643 Q ss_pred -hhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCceeEEEcCC--------------- Q lcl|Aclame:pro 87 -FIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSF--------------- 149 (344) Q Consensus 87 -~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~~~~~~~~--------------- 149 (344) +.||+++++. ||+.++.|++++||||++++|+..|+|++|+|++|.+|++..++..|+++..+ T Consensus 81 ~~lpN~~~t~~~f~~~~v~dlll~Gnayv~i~r~~~G~~~~L~~i~~~~V~v~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 160 (540) T protein:vir:41 81 ELLRACRPSFEFILLQALEDLQVFNYCTLEVVRDDQGEPVRLDYIPAHTVRVHRDGSRYMQTWDGIHVTYFKDYRYEGEV 160 (540) T ss_pred hhccCCCCCHHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCcceEEeEcCceeEeeecCceeeeeeccccccee Confidence 5699999875 56788889999999999999999999999999999999998877766554322 Q ss_pred -----ceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHH----- Q lcl|Aclame:pro 150 -----NEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRN----- 219 (344) Q Consensus 150 -----~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e----- 219 (344) .....++++||||+|.+++.+++||+||+.+++.++.++.++++|+.+||+||++|++||++++...++. T Consensus 161 ~~~~g~~~~~~~~~eViHir~~~~~~~~~G~Spi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~giL~~~g~l~~e~~~~~~ 240 (540) T protein:vir:41 161 NPDNGEDQDGVGANEIIFIHLPSPICSYYGVPRYLSAAPSILAMQKIDEYNYAFFDNYTIPSYVITVTGEFEDEMELGSD 240 (540) T ss_pred eccccccceeecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCcccCchhccchH Confidence 2234688999999999999999999999999999999999999999999999999999999876543332 Q ss_pred ----HHHHHHHHHHH-hhc-ccccccccccC-CCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhcccc Q lcl|Aclame:pro 220 ----DIEMLRENMVK-SKG-RNNFKNLFLYA-PQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKP 292 (344) Q Consensus 220 ----~~~~l~~~~~~-~~g-~~n~~~~~vl~-~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~ 292 (344) .++.+++.|++ ++| .+|+++++|+. +++.++|++|+|++++++|+||+|++++++++||++|||||++||+.+ T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~nag~~~vLe~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~eIa~afgVPp~~lG~~~ 320 (540) T protein:vir:41 241 GEPTGRTVLQGLIEDNFKYLKEAPHTPLVFSIPGGDTVEVTFTPLNTSQKELSFREYAAEKKHDIAAAHMIDPYRLGITD 320 (540) T ss_pred HHHHHHHHHHHHHHHHhccccccccceEEEecCCCcccceeEEecccchhHHHHHHHHHHHHHHHHHHhCCCHHHcCccc Confidence 23556666654 344 47899999875 555678999999999999999999999999999999999999999987 Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 293 ENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 293 ~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) .++.+++|+|++.+.|+++||.|++++||+ ||++|..+. -.+++++|+.- T Consensus 321 ~~~~n~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~L~~~~--~~~~~i~f~~~ 371 (540) T protein:vir:41 321 VGPLGGNFAEVARRTYYESVVRPQQEIVSSVLTDFIQLKL--DPGARFVFNEE 371 (540) T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--CCceEEEecch Confidence 777889999999999999999999999986 999987653 23567777765 No 16 >protein:vir:4156 Length: 542 # NCBI annotation: portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046965;genbank:gi:9630535;genbank:GeneID:1261709 Probab=100.00 E-value=7.5e-68 Score=388.57 Aligned_cols=325 Identities=16% Similarity=0.163 Sum_probs=265.7 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) |=. ..+.+-|+.+|.++.....-...+.....++|++||+++.+|+++++.++.|.+||..++ T Consensus 1 ~~~-----------------~~~~i~s~~~~~~i~~~~~~s~~~~~~~~~~~~~pp~~~~~la~l~~~n~~v~scI~~ia 63 (542) T protein:vir:41 1 MFN-----------------YHLSIRSLEKYKAIKREEVESQALGETRFEEYVEPKVNPLVLLSLLQVNPYHASACSIKA 63 (542) T ss_pred Ccc-----------------ccccccccccchhhhhccccccccccccCCccccCCCCHHHHHHHHhhcHHHHHHHHHHH Confidence 100 012233344444443332222222233445799999999999999999999999999998 Q ss_pred hhhHH--------------hhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCceeEE Q lcl|Aclame:pro 81 NILAS--------------TFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWW 145 (344) Q Consensus 81 n~~~~--------------~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~~~~ 145 (344) +.++. .+.|||.+++. +|+.++.+++++||||++++||..|++++|+|+++.+|++..+++.++. T Consensus 64 ~~IA~l~~~~~~~~~~~l~~~lpN~~~s~~~f~~~~v~~lll~Gnayi~i~rd~~G~~~~L~~l~~~~v~v~~d~~~~~~ 143 (542) T protein:vir:41 64 NDIIRTGYILEGDDEGVVDEFIRACKPSFEYVLLRALEDLQVFNYCTLEVVRDDRGDPIRFEYIPSHTIRVHKDGSRYRQ 143 (542) T ss_pred HHHhhCceeeecccchhhhhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCcceEEEEcCCeeEe Confidence 77654 46799999875 5678888999999999999999999999999999999999887776544 Q ss_pred EcCCc--------------------eEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCC Q lcl|Aclame:pro 146 VPSFN--------------------EPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHA 205 (344) Q Consensus 146 ~~~~~--------------------~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p 205 (344) ...+. ....++++||||+|.+++.+++||+||+.+++.++.++.++++|+.++|+||++| T Consensus 144 ~~~~~~~~~~~~y~~~~~~~~~~g~~~~~~~~~eIiHir~~~~~~~~~Glspi~~~~~~i~~~~~~~~~~~~~f~Ng~~p 223 (542) T protein:vir:41 144 TWDGVNITHFKDYRYEGEINPETGEDQDSVGANELVFIHIPSPVCSYYGVPRYVSAAPAILAMQKIDEYNYAFFDNYTIP 223 (542) T ss_pred eecCCcceeEEeecccccccccccccccccCcccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCc Confidence 32221 1235778999999999989999999999999999999999999999999999999 Q ss_pred ceEEEecC---------CCCCHHHHHHHHHHHHH-hhcc-cccccccccC-CCCccccceeeeccCChhHHHHHHHHHhh Q lcl|Aclame:pro 206 GYIMYVTD---------AVQDRNDIEMLRENMVK-SKGR-NNFKNLFLYA-PQGKADGIKIIPLSEVATKDDFFNIKKAS 273 (344) Q Consensus 206 ~gil~~~~---------~~~~~e~~~~l~~~~~~-~~g~-~n~~~~~vl~-~~~~~~g~~~~pl~~~~~d~qf~e~~~~~ 273 (344) ++||++++ ..+++++.+++++.|++ +.|. +|+++++|+. +++.++|++|+|++++++|+||+|+++++ T Consensus 224 ~gIL~~~~~l~de~~~~~~~~~e~~~~lk~~~~~~~~g~~~n~gk~~vL~~~~~~~~g~~~~pl~~~~~d~qfle~~~~~ 303 (542) T protein:vir:41 224 SYVITVTGEFEDELEEDPDGNPTGRTVIQALIEDNFKHLKEAPHTPLVFSIPGGDTVKVTFTPLNTSQKELSFREYAAEK 303 (542) T ss_pred cEEEEeCCccccccccccccCHHHHHHHHHHHHHHHhhhhcccCceeEeeccCCcccceeEEEcCCChhHHHHHHHHHHH Confidence 99999864 35688999999999976 4554 7889998885 56667899999999999999999999999 Q ss_pred HHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 274 AADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 274 ~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +++||++|||||.+||+.++++.+++|+|++.+.|+++||.|+++.||+ ||++|..+.- .+++++|+.. T Consensus 304 ~~~Ia~afgVPp~~lG~~~~~t~n~sn~Eq~~~~f~~~tL~P~~~~ie~~ln~~L~~~~~--~~~~~~f~~~ 373 (542) T protein:vir:41 304 KYDIAAAHMIDPYRLGIADTGPLGGNFAEVTRRTYYESVVRPQQNIISSILTDFFQVKFN--PKTRFKFNDE 373 (542) T ss_pred HHHHHHHhCCCHHHhCcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC--CceEEEecch Confidence 9999999999999999987777788999999999999999999999986 9999877542 2466777766 No 17 >protein:vir:1884 Length: 424 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037664;genbank:gi:9634122;genbank:GeneID:1262519 Probab=100.00 E-value=8.5e-64 Score=366.36 Aligned_cols=328 Identities=16% Similarity=0.187 Sum_probs=248.3 Q ss_pred CCCCC-CCCCCcchhhccccccceeEEEcCC-----ceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhh Q lcl|Aclame:pro 1 MSKKK-GKTPQPAAKTMTASAPKMEAFTFGE-----PVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSS 74 (344) Q Consensus 1 m~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~ 74 (344) +.... ++++..... .+....+.+..+.. ++.++...+++.|+....+. +-+.|+.++ +....... T Consensus 20 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~cv~~Ia~~-iA~lp~~~~------~~~~~~~~ 90 (424) T protein:vir:18 20 LQSWFVGGRLVTPNQ--GSQTGPVSAHGHLGDSSINDERILQISTVWRCVSLISTL-TACLPLDVF------ETDQNDNR 90 (424) T ss_pred HHhhhcccccccccc--cccccccccccccccccccHHHhhccHHHHHHHHHHHHh-hccCceEEE------EeecCCce Confidence 21111 111111111 11111122222211 22234455566666554443 334554332 11111110 Q ss_pred -hhhhcch-hhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCce-eEEEcCCc Q lcl|Aclame:pro 75 -PIYVKRN-ILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV-YWWVPSFN 150 (344) Q Consensus 75 -~i~~k~n-~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~-~~~~~~~~ 150 (344) .+...+. ..+....|||+++.. ||+.++.+++++||||++++|+..|++++|+|++|..|++..+++. +|.+..+| T Consensus 91 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~pl~~~~V~v~~~~~~~~y~~~~~g 170 (424) T protein:vir:18 91 KKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVISLLPLQSANMDVKLVGKKVVYRYQRDS 170 (424) T ss_pred eeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCcceEEEEcCCeEEEEEEeCC Confidence 0111110 112234799999875 5678888999999999999999999999999999999998776654 57778888 Q ss_pred eEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 151 EPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVK 230 (344) Q Consensus 151 ~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~ 230 (344) +.+.|+++||||+|.+++ ++++|+||+..++.++.++.++++|..++|+||++|++||++++..+++++++++++.|++ T Consensus 171 ~~~~~~~~eIih~r~~~~-dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~~~~~~~~ 249 (424) T protein:vir:18 171 EYADFSQKEIFHLKGFGF-TGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGEKVLTEQQRSQVEENFKE 249 (424) T ss_pred eEEEeccccEEEecCcCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCCcCCCHHHHHHHHHHHHH Confidence 889999999999998874 7899999999999999999999999999999999999999998878899999999999998 Q ss_pred hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHH Q lcl|Aclame:pro 231 SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVR 310 (344) Q Consensus 231 ~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~ 310 (344) ..|+.|+++++|+ +.|++|+|++++++|+||+|++++++++||++|||||++||+..+++.+++|+|++.+.|++ T Consensus 250 ~~~g~nag~~~vl-----~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~eq~~~~f~~ 324 (424) T protein:vir:18 250 IAGGPVKKRLWIL-----EAGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIEQQNLGFLQ 324 (424) T ss_pred HhCCcccCCceec-----cCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccccHHHHHHHHHH Confidence 8888999999998 56899999999999999999999999999999999999999987777778999999999999 Q ss_pred HHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 311 NELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 311 ~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +||.|++++||+ ||.+|.....+ ..|+++||-- T Consensus 325 ~tl~P~~~~ie~~l~~~L~~~~~~-~~~~~~fd~~ 358 (424) T protein:vir:18 325 YTLQPYISRWENSIQRWLIPAKDV-GRIHAEHNLD 358 (424) T ss_pred HHHHHHHHHHHHHHHhhcCCcccc-CCeEEEEech Confidence 999999999986 99999765433 4566777643 No 18 >protein:vir:189 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037699;genbank:gi:9634156;genbank:GeneID:1262529 Probab=100.00 E-value=1.7e-63 Score=364.74 Aligned_cols=327 Identities=17% Similarity=0.192 Sum_probs=249.1 Q ss_pred CCC----CCCCCCCcchhhccccccceeEEEcCCcee-----ccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhh Q lcl|Aclame:pro 1 MSK----KKGKTPQPAAKTMTASAPKMEAFTFGEPVP-----VLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVH 71 (344) Q Consensus 1 m~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ 71 (344) +++ .+++++..... .+ ....+.+.++....+ .+....++.|+.+..+. +-+.|+.++ +.... T Consensus 17 ~~~~~~~f~~~~~~~~~~-~~-~~~~~~~~~~~~~~~v~~~~al~~~~v~~cv~~Ia~~-iA~lp~~vy------~~~~~ 87 (424) T protein:vir:18 17 WARLKSWFVGGRLVTPNQ-GS-QTGPVSAHGYLGDSSINDERILQISTVWRCVSLISTL-TACLPLDVF------ETDQN 87 (424) T ss_pred HHHHHhhccccccccccc-hh-hccccccccccccccccHHHhhccHHHHHHHHHHHHh-hccCceEEE------EeccC Confidence 111 11111111111 11 111122333322222 34444566666555543 334454432 11111 Q ss_pred hhhhhhhcchh---hHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc-eeEEE Q lcl|Aclame:pro 72 HSSPIYVKRNI---LASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED-VYWWV 146 (344) Q Consensus 72 ~~~~i~~k~n~---~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~-~~~~~ 146 (344) ... .....++ .+....|||+++.. ||+.++.+++++||||++++|+..|++++|+|++|.+|++..+++ .+|.+ T Consensus 88 ~~~-~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~y~~ 166 (424) T protein:vir:18 88 DNR-KKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVISLLPLQSANMDVKLVGKKVVYRY 166 (424) T ss_pred Cce-eeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCcceEEEEcCCeEEEEE Confidence 000 0001111 22335799999875 567888999999999999999999999999999999999877655 45777 Q ss_pred cCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHH Q lcl|Aclame:pro 147 PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRE 226 (344) Q Consensus 147 ~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~ 226 (344) ..+|....|+++||||+|.++ .++++|+||+..+++++.++.++++|..++|+||++|++||++++..+++++++++++ T Consensus 167 ~~~g~~~~~~~~eVihir~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l~~e~~~~~~~ 245 (424) T protein:vir:18 167 QRDSEYADFSQKEIFHLKGFG-FTGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGEKVLTEQQRSQVEE 245 (424) T ss_pred EeCCeEEEeccccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCcCCCHHHHHHHHH Confidence 888888999999999999887 4789999999999999999999999999999999999999999877789999999999 Q ss_pred HHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHH Q lcl|Aclame:pro 227 NMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAK 306 (344) Q Consensus 227 ~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~ 306 (344) .|++..|+.|+++++|+ ++|++|+|++++++|+||+|++++++++||++|||||++||+..+++.+++|+|++.+ T Consensus 246 ~~~~~~~~~nag~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~eq~~~ 320 (424) T protein:vir:18 246 NFKEIAGGPVKKRLWIL-----EAGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIEQQNL 320 (424) T ss_pred HHHHHhCCcccCCceec-----cCCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCCCcccccccHHHHHH Confidence 99998888999999998 5689999999999999999999999999999999999999998877777899999999 Q ss_pred HHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 307 VFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 307 ~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) .|+++||.|++++||+ ||++|..+..+ +.++++||-- T Consensus 321 ~f~~~tl~P~~~~ie~~ln~~L~~~~~~-~~~~~~fd~~ 358 (424) T protein:vir:18 321 GFLQYTLQPYISRWENSIQRWLIPSKDV-GRLHAEHNLD 358 (424) T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcccc-CCeEEEEech Confidence 9999999999999986 99999765433 4566777643 No 19 >protein:vir:63755 Length: 547 # NCBI annotation: gp14 # Family: family:all:2446 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547619;genbank:GeneID:3783506 Probab=100.00 E-value=2e-62 Score=358.86 Aligned_cols=323 Identities=14% Similarity=0.154 Sum_probs=241.5 Q ss_pred CCCCCCCCCCcchhhcccc--ccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTAS--APKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYV 78 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~--~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~ 78 (344) |.++....-.++...++.+ .+.+..-. +-.-+.....+.||.++..|.+.+..++.+++||.. T Consensus 31 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~---------------~~~g~~~~~~~~~~~~l~~l~~~~~~npiv~~~I~~ 95 (547) T protein:vir:63 31 IQQREQEQISKAMNNKEVAYSQPVIGSMS---------------ANPGFKTKPSIRNNQDLHGVLKKFGGNIILNAIINT 95 (547) T ss_pred hhhhhHHHHHHhhcccchhhhchhhheee---------------cccccccCCccCChhHHHHHHHHhhcCHHHHHHHHH Confidence 2222111111110000100 00000011 111111112334556666666666677777777766 Q ss_pred cchhhHH---------------------------------------hhhcCCCC------CHHHHHHHHHHHHhcCCceE Q lcl|Aclame:pro 79 KRNILAS---------------------------------------TFIPHPWL------SQQDFSRFVLDFLVFGNAFL 113 (344) Q Consensus 79 k~n~~~~---------------------------------------~~~pnp~~------~~~~~~~~~~d~ll~Gnay~ 113 (344) +.+.++. ...||+++ ..+||+.++.++|++||+|+ T Consensus 96 ~a~~ia~~~~~~~~~~~~~~~~ir~k~~~~~~~~~~~~~~~~l~~~l~~pn~~~~p~~~s~~~f~~~lv~d~ll~Gn~~~ 175 (547) T protein:vir:63 96 RSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSFSSFVKKIVRDTYMYDQVNF 175 (547) T ss_pred HHHHHhhhhhhhhhhccCCCceeEecccccccChhhHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHHHHHHhhCCEEE Confidence 6543331 23455542 34678899999999999999 Q ss_pred EEeeCCCCceEEEEEeCcceeeccccCc--------eeEEEcCCceEEEEecccEEEecCCC---CCCCcccccchhhhH Q lcl|Aclame:pro 114 EKRYSTTGKVIRLETSPAKYTRRGVEED--------VYWWVPSFNEPTAFAPGSVFHLLEPD---INQELYGLPEYLSAL 182 (344) Q Consensus 114 ~~~r~~~G~~~~L~pl~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~eIih~~~~~---~~~~~~G~sp~~~~~ 182 (344) +++|+..|+|++|+||+|.+|++..+.+ +|+++..++....|+++||||+|... +..+.||+||+.++. T Consensus 176 ~i~rd~~G~~~~L~~l~p~~V~~~~~~~g~~~~~~~~y~~~~~~~~~~~~~~~eiih~r~n~~~~~~~~~~G~Spi~~~~ 255 (547) T protein:vir:63 176 EKVFNRNQSMVRFVAKDPTTIFFATTADGKIPDNGNRFVQVIDQKIVATFNAREMAFAVRNPRSDIYATGYGYPELEIAL 255 (547) T ss_pred EEEECCCCcEEEEEEecCceeEEEECCccccccCceEEEEEcCCcEEEEeccccEEEecccCCCCcccccccccHHHHHH Confidence 9999999999999999999998764432 35666677778899999999998643 344778999999999 Q ss_pred HHHHHHHHHHHHHHHHHHccCCCceEEEecC-CCCCHHHHHHHHHHHHH-hhcccccccccccCCCCccccceeeeccCC Q lcl|Aclame:pro 183 NSAWLNESATLFRRKYYENGAHAGYIMYVTD-AVQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEV 260 (344) Q Consensus 183 ~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~-~~~~~e~~~~l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~ 260 (344) .+|.++.++++|+.+||+||++|+|||.+++ ..++++++++++++|++ +.|.+|+++++|+. ++|++|+|++++ T Consensus 256 ~~i~~~~~a~~~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lk~~~~~~~~G~~nagk~~vl~----~~g~~~~~l~~~ 331 (547) T protein:vir:63 256 KQFIAHENTEAFNDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQIPVVS----AEDVKFVNMTPS 331 (547) T ss_pred HHHHHHHHHHHHHHHHHHcCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhcCccccccccccc----CCCceEEEcCCC Confidence 9999999999999999999999999999874 45899999999999976 57889999986664 358999999999 Q ss_pred hhHHHHHHHHHhhHHHHHHHhcCChHHhcccccc--------ccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccc Q lcl|Aclame:pro 261 ATKDDFFNIKKASAADLLDAHRIPFQLMGGKPEN--------VGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEV 331 (344) Q Consensus 261 ~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~--------~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~ 331 (344) ++|+||+|++++++++||++|||||++||+...+ +.+++|++++.+.|++.||+|++.+||+ ||.+|..+. T Consensus 332 ~~d~qfle~~~~~~~~Ia~afgVPP~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~~~~~tL~P~~~~ie~~ln~~L~~~~ 411 (547) T protein:vir:63 332 ARDMEFEKWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGFIEDFINKHIVAEF 411 (547) T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc Confidence 9999999999999999999999999999986542 2478999999999999999999999986 999997653 Q ss_pred eeccccccccCCC Q lcl|Aclame:pro 332 IRFKNYSLDTDNG 344 (344) Q Consensus 332 irf~~y~l~~d~g 344 (344) . ..|+++|+.. T Consensus 412 -~-~~~~~~f~~~ 422 (547) T protein:vir:63 412 -G-DKYTFQFVGG 422 (547) T ss_pred -C-CceEEEeecc Confidence 2 3578888866 No 20 >protein:vir:80644 Length: 551 # NCBI annotation: gp23 # Family: family:all:2446 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468463;genbank:gi:157325038;genbank:GeneID:5601615 Probab=100.00 E-value=1e-61 Score=354.90 Aligned_cols=329 Identities=15% Similarity=0.164 Sum_probs=245.5 Q ss_pred CCCCCCC------------CCCcchhhccccccceeEEEcCCce-eccCcchhhhhhhhhccchhhhccccHHHHHHHHh Q lcl|Aclame:pro 1 MSKKKGK------------TPQPAAKTMTASAPKMEAFTFGEPV-PVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLR 67 (344) Q Consensus 1 m~~~~~~------------~~~~~~~~~~~~~~~~~~f~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~ 67 (344) |+-..+. ........+.... +..++ ..|. +.+... .....-..+.||.++..|.+.+. T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~-~~~a~--~~~~~~~~~~~------~~~~~r~~~~~~~~l~~~~~~~~ 88 (551) T protein:vir:80 18 KSDAVKHIEVDDNYSIAIQQREQEQISKAMNN-KEVAY--SQPVIGSMSAN------PGFKTKPSIRNNQDLHGVLKKFG 88 (551) T ss_pred hhhcccccccccceeeecccccHHHHHHhhcc-Cccee--ecccccceecC------cccccCccccChhHHHHHHHHhh Confidence 1110000 0001100011110 11111 1111 111111 11111123446666777777777 Q ss_pred hhhhhhhhhhhcchhhHH---------------------------------------hhhcCCCC-----C-HHHHHHHH Q lcl|Aclame:pro 68 AAVHHSSPIYVKRNILAS---------------------------------------TFIPHPWL-----S-QQDFSRFV 102 (344) Q Consensus 68 ~~~~~~~~i~~k~n~~~~---------------------------------------~~~pnp~~-----~-~~~~~~~~ 102 (344) .++.+++||..+++.++. ...||+++ + .+|++.++ T Consensus 89 ~npiv~~~I~~ia~~IA~~~~~~~~~~~g~~~~i~~kd~~~~~~~~~~~~~~~i~~~l~~pn~~~~p~~~s~~~f~~~lv 168 (551) T protein:vir:80 89 GNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSFSSFVKKIV 168 (551) T ss_pred cCHHHHHHHHHHHHHHhhhhhhhhhhcCCCCceEEecccCcccChhHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHH Confidence 888888888877765442 12466653 3 46788899 Q ss_pred HHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc--------eeEEEcCCceEEEEecccEEEecCC---CCCCC Q lcl|Aclame:pro 103 LDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--------VYWWVPSFNEPTAFAPGSVFHLLEP---DINQE 171 (344) Q Consensus 103 ~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~eIih~~~~---~~~~~ 171 (344) .+++++||+|++++|+..|+|++|+||+|.+|++..+.+ +|+++..++....|+++||||++.. ++.++ T Consensus 169 ~dlll~Gnay~~i~rd~~G~~~~L~~l~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~~eiiH~~~n~~~~~~~~ 248 (551) T protein:vir:80 169 RDTYMYDQVNFEKVFNRNQSMVRFVAKDPTTIFFATTADGKIPDNGNRFVQVIDQKIVATFNAREMAFAVRNPRSDIYAT 248 (551) T ss_pred HHHHhcCCEEEEEEECCCCcEEEEEEeCCceeEEEECCccccccCceEEEEEeCCcEEEEEcccceEEecccCCCCcccc Confidence 999999999999999999999999999999998765432 3556666777889999999999854 34457 Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecC-CCCCHHHHHHHHHHHHH-hhcccccccccccCCCCcc Q lcl|Aclame:pro 172 LYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTD-AVQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKA 249 (344) Q Consensus 172 ~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~-~~~~~e~~~~l~~~~~~-~~g~~n~~~~~vl~~~~~~ 249 (344) +||+||+.+++.+|.++.++++|+.+||+||++|+|||.+++ ..+++++++++|+.|++ +.|.+|+++++|+. + T Consensus 249 ~~G~spi~~a~~~i~~~~a~~~~~~~~f~Ng~~p~giL~~~~~~~lt~e~~~~lk~~~~~~~~G~~nag~~~vl~----~ 324 (551) T protein:vir:80 249 GYGYPELEIALKQFIAHENTEAFNDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQIPVVS----A 324 (551) T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEcCCCCCCHHHHHHHHHHHHHHhcCccccCcccccc----C Confidence 899999999999999999999999999999999999999864 45899999999999976 57789999986664 3 Q ss_pred ccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhcccccc--------ccccccHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 250 DGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPEN--------VGSLGDIEKVAKVFVRNELIPLQDRIR 321 (344) Q Consensus 250 ~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~--------~~~~~n~e~~~~~f~~~~l~P~~~~ie 321 (344) +|++|+|++++++|+||+|++++++++||++|||||++||+.... +.+++|++++...|++.||+||+.+|| T Consensus 325 ~g~~~~~l~~~~~D~qfle~~~~~~~~Ia~aFgVPp~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~f~~~tL~P~~~~ie 404 (551) T protein:vir:80 325 EDVKFVNMTPSARDMEFEKWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGFIE 404 (551) T ss_pred CCceEEEccCChhHHHHHHHHHHHHHHHHHHhcCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHH Confidence 589999999999999999999999999999999999999986543 237899999999999999999999998 Q ss_pred H-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 322 E-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 322 ~-ln~~L~~~~irf~~y~l~~d~g 344 (344) + ||++|..+. . ..|+++|+.. T Consensus 405 ~~ln~~L~~~~-~-~~~~f~f~~~ 426 (551) T protein:vir:80 405 DFINKHIVAEF-G-DKYTFQFVGG 426 (551) T ss_pred HHHHhhhcccc-C-CceEEEeecc Confidence 6 999997653 2 3578888877 No 21 >protein:vir:100249 Length: 431 # NCBI annotation: gp78 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355414;genbank:gi:77864704;genbank:GeneID:3725971 Probab=100.00 E-value=2e-61 Score=353.41 Aligned_cols=331 Identities=16% Similarity=0.167 Sum_probs=230.6 Q ss_pred CC---CCC-CCCCCcchhh--ccccccceeEEE-cCCceeccCcchhhhhhhhhc-cc------hhhhccccHHHHHHHH Q lcl|Aclame:pro 1 MS---KKK-GKTPQPAAKT--MTASAPKMEAFT-FGEPVPVLDRRDILDYVECIS-NG------RWYEPPVSFTGLAKSL 66 (344) Q Consensus 1 m~---~~~-~~~~~~~~~~--~~~~~~~~~~f~-~~~p~~~~~~~~~~~~~~~~~-~~------~~~~~p~~~~~l~~~~ 66 (344) |. .-+ ++.+..++.. .++........+ +|+-....+..++.+++.... .| .+...|.....+..+ T Consensus 1 Mgl~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~V~~ci~~I- 79 (431) T protein:vir:10 1 MGLFDFIRREKQPEAQARPHVEPSFQASTPTTSIPGETFEGLDDPRLKEYIRRGELNGGTGRETRALRNMAVLRCVTLI- 79 (431) T ss_pred CcchhhhhcCcccccccccccccccccccccccccccccccccchHHHHhhccCccCcceechhhhhccHHHHHHHHHH- Confidence 65 311 1111111100 000000001111 111100011111222221100 01 111111111111111 Q ss_pred hhhhhhhhhhhhc---------ch---hhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcce Q lcl|Aclame:pro 67 RAAVHHSSPIYVK---------RN---ILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKY 133 (344) Q Consensus 67 ~~~~~~~~~i~~k---------~n---~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~ 133 (344) ++...+.+++.+ .+ ..+...+|||+++.. ||+.++.++++.||+|++++|+. |.+++|+|+++.+ T Consensus 80 -a~~iA~lp~~v~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~-g~~~~L~pl~~~~ 157 (431) T protein:vir:10 80 -SGTIGMLPMNLISSDDSKQVLTDDPAHRLLKYKPNDWQTPMEFKSLMQLRALLDGESMARIVWSG-NRPIRLIPMDRGS 157 (431) T ss_pred -HHhhccCceEEEEecCceeeeccchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcC-CceEEEEEEcCce Confidence 011111111110 01 112335899999875 56778899999999999999995 8999999999999 Q ss_pred eecccc--CceeEE-EcCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEE Q lcl|Aclame:pro 134 TRRGVE--EDVYWW-VPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMY 210 (344) Q Consensus 134 ~~~~~~--~~~~~~-~~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~ 210 (344) |++..+ +..+|. ...+|..+.|+++||||+|.++ .++++|+||+..+.+++.++.++++|..++|+||++|+|||+ T Consensus 158 v~~~~~~~~~~~y~~~~~~g~~~~~~~~dViHir~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~ 236 (431) T protein:vir:10 158 AKGRLTSTWQIVYDYTTPTGDKIELPAREVFHLRDLS-IDGVSGVSRVKLSGNALELAEQAERAASRTFRTGVMAGGAIE 236 (431) T ss_pred eEEEEcCCCeEEEEEEeCCceEEEEchhhEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEe Confidence 987544 333443 4567788899999999999886 468999999999999999999999999999999999999999 Q ss_pred ecCCCCCHHHHHHHHHHHHH-hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhc Q lcl|Aclame:pro 211 VTDAVQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMG 289 (344) Q Consensus 211 ~~~~~~~~e~~~~l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG 289 (344) ++ +.+++|+.+++++.|++ +.|.+|+++++|+ ++|++|+|++++++|+||+|++++++++||++|||||++|| T Consensus 237 ~~-~~ls~e~~~~~~~~~~~~~~g~~n~g~~~vl-----~~g~~~~~l~~~~~d~q~le~r~~~~~~Ia~~fgVPp~~lg 310 (431) T protein:vir:10 237 VP-KELSDNAYGRMKASVQENHTGSENAGSWMLL-----EEGATAKQFSNTAASAQQIENRNHQIEEVARMYGVPRPLLM 310 (431) T ss_pred cC-CCCCHHHHHHHHHHHHHHhcCccccCCceec-----CCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhC Confidence 76 47899999999999965 5778999999998 56899999999999999999999999999999999999999 Q ss_pred cccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 290 GKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 290 ~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +. ++++++|+|++.+.|+++||.||+.+||+ +|++|..+..+ ..|+++||-- T Consensus 311 ~~--~~~t~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~~-~~~~~~fd~~ 363 (431) T protein:vir:10 311 MD--DTSWGSGIEQLAIFFIQYGLSHWFVSWEQAAARAFLPEKML-GQRQFKFNEG 363 (431) T ss_pred CC--CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhc-CCceEEEech Confidence 84 45789999999999999999999999986 99999765433 4566777644 No 22 >protein:vir:4509 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599035;genbank:gi:19548993;genbank:GeneID:935206 Probab=100.00 E-value=7.3e-62 Score=355.76 Aligned_cols=325 Identities=13% Similarity=0.162 Sum_probs=242.8 Q ss_pred CCCCC---CC-CCCcchhhccccccce-eEEEcC---CceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhh Q lcl|Aclame:pro 1 MSKKK---GK-TPQPAAKTMTASAPKM-EAFTFG---EPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHH 72 (344) Q Consensus 1 m~~~~---~~-~~~~~~~~~~~~~~~~-~~f~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~ 72 (344) |-.++ +| ...++.. .+...-.. ..+.-| .+..++...+++.|+....+. +-+.|+.++ +.+.- T Consensus 17 ~~~~~lf~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vs~~~al~~~~v~~cv~~Ia~~-iA~lp~~v~------~~~~~- 87 (424) T protein:vir:45 17 VLLDALFRSKSLENPSTP-ITGDAVDTDGLFRADVYVSPETAMKLAAVYSCIYVLSSS-LAQMPLHVM------RRHKG- 87 (424) T ss_pred HHHHhhccccCCCCCccc-cchhhhhhhccccCCceechHHhhccHHHHHHHHHHHHH-HhhCceEEE------EecCC- Confidence 33211 11 1111111 01100000 011111 223345566677776665543 445555432 11110 Q ss_pred hhhhhhcchhh--HHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCce-eEEEcC Q lcl|Aclame:pro 73 SSPIYVKRNIL--ASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV-YWWVPS 148 (344) Q Consensus 73 ~~~i~~k~n~~--~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~-~~~~~~ 148 (344) .....+...+ +....|||+|++. ||+.++.+++++||||+++.|+..|+|++|+|++|..+++..+++. +|.+.. T Consensus 88 -~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~i~~~~~~~~y~~~~ 166 (424) T protein:vir:45 88 -KVEPARDHPAFYLVHDEPNTWQTSYKWRELKQRHILGWGNGYTWVKRNRRGEVISLDCCMPWETTLMNTGGRYTYGLYN 166 (424) T ss_pred -ceeecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEecCceEEEEEcCCeEEEEEEe Confidence 1111111111 2234799999975 5677889999999999999999999999999999999998776664 466666 Q ss_pred CceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 149 FNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENM 228 (344) Q Consensus 149 ~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~ 228 (344) .+....|+++||||+|.+++ ++++|+||+..+.++|.++.++++|+.++|+||++|++||++++ .+++|+.+++++.| T Consensus 167 ~~~~~~~~~~eVih~r~~~~-d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~-~l~~e~~~~~~~~~ 244 (424) T protein:vir:45 167 EYGAFAISPDDMIHIRALGN-NQKMGLSPIMQHAETIGMGMSGQKYTESFFSGNARPAGIVSVKS-GLNKESWGWLKDQW 244 (424) T ss_pred cCceEEECcccEEEecCcCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCC-CCCHHHHHHHHHHH Confidence 66677899999999998875 68999999999999999999999999999999999999999875 68999999999999 Q ss_pred HHh-hcc-cccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHH Q lcl|Aclame:pro 229 VKS-KGR-NNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAK 306 (344) Q Consensus 229 ~~~-~g~-~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~ 306 (344) ++. .|. +|+++++|+ +.|++|+|++++++|+||+|++++++++||++|||||++||+. +.++++|+|++.+ T Consensus 245 ~~~~~g~~~n~g~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~--~~~t~sn~eq~~~ 317 (424) T protein:vir:45 245 QKASQALRRQENKTMLL-----PADLDYKALTVSPVDAQIIDMMKLNRSMIAGIFNIPAHMINDL--EKATFSNISAQAI 317 (424) T ss_pred HHHhccccccCCceeEc-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC--CCCCcccHHHHHH Confidence 764 553 689999998 5789999999999999999999999999999999999999985 4468999999999 Q ss_pred HHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 307 VFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 307 ~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) .|+++||.|+++.||+ +|.+|..+..+-.+|+++||-- T Consensus 318 ~f~~~tL~P~~~~ie~~ln~kLl~~~e~~~g~~i~fd~~ 356 (424) T protein:vir:45 318 QFVRYTMMPWVTNWEQELNRRLFTRAELAAGYYVRFNLT 356 (424) T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhhcCCcEEEeech Confidence 9999999999999985 9999977643434577777644 No 23 >protein:vir:100150 Length: 437 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneID:2744197 Probab=100.00 E-value=1.8e-61 Score=353.67 Aligned_cols=326 Identities=13% Similarity=0.125 Sum_probs=236.6 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhh--------hhccchhhhccccHHHH---HHHHhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVE--------CISNGRWYEPPVSFTGL---AKSLRAA 69 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~--------~~~~~~~~~~p~~~~~l---~~~~~~~ 69 (344) |.|.|.|.=....++....... -+|..+| .+.+.+. .+....+...|.....+ +..+..- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~g~--~~s~~~~-------~~~~~~~~~~~~~g~~v~~~~al~~~~v~~ci~~Ia~~ia~l 71 (437) T protein:vir:10 1 MKQGKQRALGRIKSSFLKWLGV--PISLTDG-------SFWSAWGGMGSSSGETVTADSALQLSAVWSCVRLIAETIATL 71 (437) T ss_pred CCcchhhhhhhhHHhhhhhcCC--cccCCch-------hHHHhhcccccCCCceechHhhhccHHHHHHHHHHHHHHhhC Confidence 9887766543332221111000 0111111 1111110 00011122222221111 1111111 Q ss_pred hhh--------hhhhhhcch-hhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeecccc Q lcl|Aclame:pro 70 VHH--------SSPIYVKRN-ILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVE 139 (344) Q Consensus 70 ~~~--------~~~i~~k~n-~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~ 139 (344) +.+ ...+...+. ..+...+|||+++.. ||+.++.+++++||||++++|+. |++++|+|++|..|++..+ T Consensus 72 p~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~-g~~~~L~~l~p~~v~i~~~ 150 (437) T protein:vir:10 72 PLNLYQTKPDGTRVLAKQHRLYTVIHSQPNAENTAAEFWEVIVASMLLWGNGYARKLRSA-GVLIGLELMLPQRTTVKRL 150 (437) T ss_pred ceeEEEEcCCCceeeccccHHHHHhhccCCcCCCHHHHHHHHHHHHhhcCCeEEEEEecC-CcEEEEEEEcCcceEEEEC Confidence 111 000000111 112335799999875 56778889999999999999995 9999999999999988664 Q ss_pred Cc--eeEEE-cCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCC Q lcl|Aclame:pro 140 ED--VYWWV-PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQ 216 (344) Q Consensus 140 ~~--~~~~~-~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~ 216 (344) .+ .+|.+ ..+|....|+++||||+|.++ .++++|+||+..+..++.++.++++|+.++|+||++|++||+++ +.+ T Consensus 151 ~~g~~~y~~~~~~g~~~~~~~~dIih~r~~~-~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~-~~l 228 (437) T protein:vir:10 151 TSGALQYTYRNVDGTVSTLAEDDVFHVRGFS-LDGLMGLTPIQYAREVLGNSTAANKTSASVFRNGLRPSGVLSTD-QIL 228 (437) T ss_pred CCCeEEEEEEecCceEEEEccccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcC-CCC Confidence 33 34443 456778899999999999886 57899999999999999999999999999999999999999976 568 Q ss_pred CHHHHHHHHHHHHH-hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccc Q lcl|Aclame:pro 217 DRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENV 295 (344) Q Consensus 217 ~~e~~~~l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~ 295 (344) ++++.+++++.|++ +.|.+|+++++|+ ++|++|+|++++++|+||+|++++++++||++|||||++||+..+++ T Consensus 229 ~~e~~~~~~~~~~~~~~g~~nag~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t 303 (437) T protein:vir:10 229 QKEKRAEIRTDLAEQFGGAMQAGKTMVL-----EAGMKYQAITMNPGDVQLLETRAFNIEEICRWYRVPPFMVGHSEKST 303 (437) T ss_pred CHHHHHHHHHHHHHHhcCccccCcceec-----cCCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcc Confidence 99999999999975 5788999999999 56899999999999999999999999999999999999999987777 Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 296 GSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 296 ~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) .+++|+|++.+.|+++||+|++..||+ ||.+|..+..+ ..+.++||-- T Consensus 304 ~~~sn~e~~~~~f~~~tl~P~~~~ie~~l~~kll~~~e~-~~~~~~fd~~ 352 (437) T protein:vir:10 304 SWGTGIEQQTLGFLTFTLRPWLTRIEQAARRSLLRPGER-DQFYAEFSVE 352 (437) T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc-CceEEEEech Confidence 778999999999999999999999985 99999765433 3455666544 No 24 >protein:vir:93610 Length: 454 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Probab=100.00 E-value=2.7e-61 Score=352.68 Aligned_cols=323 Identities=15% Similarity=0.164 Sum_probs=239.7 Q ss_pred CCCCCCCCCCcchhhccccccceeEE-----EcC---------CceeccCcchhhhhhhhhccchhhhccccHHHHHHHH Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAF-----TFG---------EPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSL 66 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f-----~~~---------~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 66 (344) +-++.++..........+.- ...| .|+ +|..+|...+++.|+....+. +-+.|+.++ T Consensus 4 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~g~~v~~~~al~~~~V~~~v~~Ia~~-iA~lp~~~~------ 74 (454) T protein:vir:93 4 LLRRTRKNQKSGRDVREAGW--TSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQD-IAKMRLRLM------ 74 (454) T ss_pred ccccCcccccccccccchhh--hhhhhhhhhhhcchhhcCcccChHHhhccHHHHHHHHHHHHh-hccCceEEE------ Confidence 44443332322222111100 0111 121 123345555666666655443 334555432 Q ss_pred hhhhhhhhhhhhcchhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccC--cee Q lcl|Aclame:pro 67 RAAVHHSSPIYVKRNILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEE--DVY 143 (344) Q Consensus 67 ~~~~~~~~~i~~k~n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~--~~~ 143 (344) +............+........|||+|+.. ||+.++.+++++||||++++|+..|++++|+|++|.+|++..+. ..+ T Consensus 75 ~~~~~g~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~ 154 (454) T protein:vir:93 75 QTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVF 154 (454) T ss_pred EeccCCccchhhhHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCcceEEEEcCCCcEE Confidence 211111110011111223345899999875 56778889999999999999999999999999999999876543 345 Q ss_pred EEEcCC-----ceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCH Q lcl|Aclame:pro 144 WWVPSF-----NEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDR 218 (344) Q Consensus 144 ~~~~~~-----~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~ 218 (344) |.+... +....|+++||||+|...+.+++||+||+..+..++.++.++++|..++|+||++|++||+++ +.+++ T Consensus 155 y~~~~~~~~~~~~~~~~~~~eViH~k~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~-~~l~~ 233 (454) T protein:vir:93 155 YRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIP-GSITE 233 (454) T ss_pred EEEEeccccccceeEEecCcceEEeccCCCCCCceeccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEecC-CCCCH Confidence 555432 346789999999999766788999999999999999999999999999999999999999986 46899 Q ss_pred HHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhcccccccccc Q lcl|Aclame:pro 219 NDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSL 298 (344) Q Consensus 219 e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~ 298 (344) ++.+++++.|++..++.|+++++|+ +.|++|+|++.+++|+||+|++++++++||++|||||++||+. +.+++ T Consensus 234 e~~~~~~~~~~~~~~g~n~g~~~vl-----~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~--~~~t~ 306 (454) T protein:vir:93 234 ENAKKLKSNWDSGYTGENAGKTAIL-----SNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVG--QPPSS 306 (454) T ss_pred HHHHHHHHHHHHHhcccccCCceec-----cCCceEEEcccChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCC--CCCcc Confidence 9999999999887777899999998 5689999999999999999999999999999999999999985 44689 Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 299 GDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 299 ~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +|+|++.+.|+++||.|++.+||+ +|.+|.... +++++||-- T Consensus 307 sn~e~~~~~f~~~~l~P~~~~ie~~ln~~L~~~~----~~~~~f~~~ 349 (454) T protein:vir:93 307 DNVEALEQQYYSQCLQTLIESIELLLDEALETGE----NESTEFDVT 349 (454) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----CcEEEeech Confidence 999999999999999999999986 999996532 233444322 No 25 >protein:vir:80796 Length: 574 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504121;genbank:gi:158079308;genbank:GeneID:5666445 Probab=100.00 E-value=9.3e-61 Score=349.69 Aligned_cols=323 Identities=15% Similarity=0.175 Sum_probs=239.5 Q ss_pred CCCCCCCCCCcchhhcc--------------ccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHH Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMT--------------ASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSL 66 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~--------------~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 66 (344) |.++..+++....+-.. .+.+.+.+..|... ......+.+|.++..+.+.+ T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~~~ 91 (574) T protein:vir:80 27 MHLREIDTNVVNNEPYSMESIEKGMNGKTTAYMQPIIGEMSVNPG---------------YKTKPSIRNSQDLHKTLKKF 91 (574) T ss_pred cccchhhhhhhhccCCCHHHHHHhHhhhcccccchhhhhcccccc---------------ccCcCccCCcccHHHHHHhh Confidence 76666444433211100 00011111122111 11112333444444444444 Q ss_pred hhhhhhhhhhhhcchhh-------------------------------------HHhh------hcCCCC-C-HHHHHHH Q lcl|Aclame:pro 67 RAAVHHSSPIYVKRNIL-------------------------------------ASTF------IPHPWL-S-QQDFSRF 101 (344) Q Consensus 67 ~~~~~~~~~i~~k~n~~-------------------------------------~~~~------~pnp~~-~-~~~~~~~ 101 (344) ..++.+..|+..+.+.+ +..+ .+||.+ + .+|++.+ T Consensus 92 ~~~~iv~~~i~~~~~~V~~~~~~i~~~ia~lp~~i~~kd~~~~~~~~~~~~~~~l~~ll~~~~~~~nP~~~s~~ef~~~l 171 (574) T protein:vir:80 92 GNNIILNAIINTRSNQVSMYCKPARNSETGVGYEIRLKDIEAEPTSHDIANIKRIESFLENTAQFRDPNRDNFTTFCKKL 171 (574) T ss_pred ccChhHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEeccCCCccchhhhhhhHHHHHHhccCCCCCCccccHHHHHHHH Confidence 44444433333322111 1111 245553 3 4688999 Q ss_pred HHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccC--------ceeEEEcCCceEEEEecccEEEecCCC---CCC Q lcl|Aclame:pro 102 VLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEE--------DVYWWVPSFNEPTAFAPGSVFHLLEPD---INQ 170 (344) Q Consensus 102 ~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~eIih~~~~~---~~~ 170 (344) +.+++++||+|++++|+..|+|++|+|++|.+|++..+. ..||++..++....|+++||||++... +.+ T Consensus 172 v~~lll~Gnayi~i~r~~~G~~~~L~pl~p~~V~v~~d~~~~~~~~~~~y~~~~~g~~~~~~~~~eiih~~~~~~~~~~~ 251 (574) T protein:vir:80 172 VRATYMYDQVNFEKVFDKDGNFIKFDTVDPTTIFLATNGEGKLIKNGERFVQVIDNRIVAKFNERELAFAVRNPRADIEV 251 (574) T ss_pred HHHHHhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCccccccCceEEEEEeCCceEEEEccccEEEEeccCCCCccc Confidence 999999999999999999999999999999999986543 347778888888999999999998543 345 Q ss_pred CcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecC-CCCCHHHHHHHHHHHHH-hhcccccccccccCCCCc Q lcl|Aclame:pro 171 ELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTD-AVQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGK 248 (344) Q Consensus 171 ~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~-~~~~~e~~~~l~~~~~~-~~g~~n~~~~~vl~~~~~ 248 (344) ++||+||+.+++.+|.++.++++|+.++|+||++|+|||.+++ ..+++++++++++.|++ +.|.+|+|+++|+. T Consensus 252 ~~~G~spi~~a~~~i~~~~~a~~~~~~~f~ng~~p~gil~~~~~~~ls~e~~~~lk~~~~~~~~G~~n~g~~~vl~---- 327 (574) T protein:vir:80 252 GQYGYPELEIALKQFIAHENTEVFNDRFFSHGGTTRGILHVKTGQQQSQQALDIFRREWRSSLAGINGSWQIPVVS---- 327 (574) T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceeec---- Confidence 7899999999999999999999999999999999999999864 45899999999999976 57779999976553 Q ss_pred cccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccc--------cccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 249 ADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENV--------GSLGDIEKVAKVFVRNELIPLQDRI 320 (344) Q Consensus 249 ~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~--------~~~~n~e~~~~~f~~~~l~P~~~~i 320 (344) ..|++|+|++++++|+||+|++++++++||++|||||++||+....+ .+++|+|++.+.|++.||.|++.+| T Consensus 328 ~~G~~~~~l~~s~~D~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~t~~gs~~~~~n~sn~E~~~~~f~~~tL~P~~~~i 407 (574) T protein:vir:80 328 AEDVKFVNMTPSANDMQFEKWLNYLINVISALYGIDPAEINFPNNGGATGSKGGSLNEGNSKEKMQASQNKGLQPLLRFI 407 (574) T ss_pred CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHH Confidence 35899999999999999999999999999999999999999876533 3568999999999999999999999 Q ss_pred HH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 321 RE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 321 e~-ln~~L~~~~irf~~y~l~~d~g 344 (344) |+ ||++|..+.. ..+.++|+.+ T Consensus 408 e~~ln~~Ll~~~~--~~~~~~f~~~ 430 (574) T protein:vir:80 408 EDTVNTYIVAEFG--EKYQFQFRGG 430 (574) T ss_pred HHHHHhhhhhhcC--CceEEEeccc Confidence 96 9999976542 3477888888 No 26 >protein:vir:101648 Length: 518 # NCBI annotation: gp11 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654766;genbank:gi:109302764;genbank:GeneID:4156082 Probab=100.00 E-value=2.6e-60 Score=347.28 Aligned_cols=323 Identities=13% Similarity=0.182 Sum_probs=234.5 Q ss_pred CCCCCCCCCCcchh-hccccccceeEEEcCCce---ecc-----------CcchhhhhhhhhccchhhhccccHHHHHHH Q lcl|Aclame:pro 1 MSKKKGKTPQPAAK-TMTASAPKMEAFTFGEPV---PVL-----------DRRDILDYVECISNGRWYEPPVSFTGLAKS 65 (344) Q Consensus 1 m~~~~~~~~~~~~~-~~~~~~~~~~~f~~~~p~---~~~-----------~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 65 (344) |=.-..+.....+. ...+.. -..|.+ .|. ++. ...+|+.|+....+. +-+.|+.+ T Consensus 1 ~~~~~~~~~~~p~~~e~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~V~acV~~IA~~-iA~lpl~l------ 70 (518) T protein:vir:10 1 MLLANGQTLSAPAMAELSPQM--QDSYYY-APAVGMQLERQFSLYGGIYKNQPWVRTVIAKRAQA-LARLPVKC------ 70 (518) T ss_pred CcccCceeecCchhhhhhhhh--hccccc-ccccceecccccchhhHHHhhhHHHHHHHHHHHHh-hccCceEE------ Confidence 65555443332221 111111 112222 121 110 011222333222221 11222211 Q ss_pred HhhhhhhhhhhhhcchhhHHhhhcCCCCCH-HHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc--- Q lcl|Aclame:pro 66 LRAAVHHSSPIYVKRNILASTFIPHPWLSQ-QDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--- 141 (344) Q Consensus 66 ~~~~~~~~~~i~~k~n~~~~~~~pnp~~~~-~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~--- 141 (344) ++.+...... ...+........|||+|+. +||+.++.+++++||||++++|+..|+|++|+|++|..|++..+.+ T Consensus 71 ~~~~~~~~~~-~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~v~v~~~~~~~~ 149 (518) T protein:vir:10 71 MFTSGDTETE-ESDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKRNSRTGR 149 (518) T ss_pred EEEcCCCcee-ccchHHHHHHcCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCCceEEEEcCCCCE Confidence 1111111100 0111222344589999987 5677888999999999999999999999999999999998865532 Q ss_pred eeEEEcC----CceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCC Q lcl|Aclame:pro 142 VYWWVPS----FNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQD 217 (344) Q Consensus 142 ~~~~~~~----~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~ 217 (344) .+|.+.. ++..+.|+++||||+|.+++++.++|+||+.++.++|.++.++++|+.++|+||++|+|||+++ ..++ T Consensus 150 ~~y~~~~~~~~~~~~~~~~~~eViHir~~s~dg~~~G~spi~~a~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~-~~ls 228 (518) T protein:vir:10 150 YEYYFQAGAGVGTQLVSFADDEVVPIRFFNPDGLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHE-KRLS 228 (518) T ss_pred EEEEEEecCCccceEEEecCCcEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecC-CCCC Confidence 3344432 3456789999999999998776678999999999999999999999999999999999999876 5689 Q ss_pred HHHHHHHHHHHHH-hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhcccccccc Q lcl|Aclame:pro 218 RNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVG 296 (344) Q Consensus 218 ~e~~~~l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~ 296 (344) +++++++++.|++ +.|.+|+++++|+ ++|++|+|++++++|+||+|++++++++||++|||||++||+. +.+ T Consensus 229 ~e~~~~~k~~~~~~~~G~~nag~v~vL-----~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~lg~~--~~~ 301 (518) T protein:vir:10 229 EAAQQRLREQFDRAHSGSSNTGKTMVV-----EEGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHIL--DRA 301 (518) T ss_pred HHHHHHHHHHHHHHhcCccccCcceEc-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccC--CCC Confidence 9999999999976 5677999999999 5789999999999999999999999999999999999999986 346 Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 297 SLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 297 ~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +++|+|++.+.|+++||.|++.+||+ ||++|..+.. ..|.++||-- T Consensus 302 t~sn~eq~~~~f~~~tL~P~l~~ie~~ln~~L~~~~~--~~~~~~fd~~ 348 (518) T protein:vir:10 302 TFSNISAQMRAFYRDTMAIPIARIQSAMDKYVGQYWV--RKNRMKFDID 348 (518) T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--CCceEEEech Confidence 89999999999999999999999985 9999987543 2455666533 No 27 >protein:vir:4337 Length: 434 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061500;genbank:gi:9635589;genbank:GeneID:1262858 Probab=100.00 E-value=3.4e-60 Score=346.58 Aligned_cols=330 Identities=15% Similarity=0.167 Sum_probs=241.7 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhh-hh-hccc------hhhhccccHHH---HHHHHhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYV-EC-ISNG------RWYEPPVSFTG---LAKSLRAA 69 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~-~~-~~~~------~~~~~p~~~~~---l~~~~~~~ 69 (344) |+.-=.+.-.++.... +...|.++.+.-.++..++...+ .. ...| .+...|..+.. ++.....- T Consensus 1 ~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~v~~~~al~~~~V~~~i~~ia~~ia~l 75 (434) T protein:vir:43 1 MSKSLGKVLSSATSAP-----RSSLFGWGGKTIRLTDGAFWSQFLGRESSSGKKVTVDKAMKLSAVWACVRLISTSVAGL 75 (434) T ss_pred Cccchhhhhhhccccc-----chhhhcccccccccCchHHHHHHhcCCccCCceechhhhhccHHHHHHHHHHHHhhhhC Confidence 8776655333332211 11233443332222222221111 00 0011 12222221111 12111111 Q ss_pred hhh-------hhhhhhcchhh--HHhhhcCCCCCH-HHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeecccc Q lcl|Aclame:pro 70 VHH-------SSPIYVKRNIL--ASTFIPHPWLSQ-QDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVE 139 (344) Q Consensus 70 ~~~-------~~~i~~k~n~~--~~~~~pnp~~~~-~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~ 139 (344) +.+ +.....+...+ +...+|||+++. +||+.++.+++++||+|+++.|+ .|+|++|+|++|..|++..+ T Consensus 76 p~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~~~-~G~~~~L~~l~p~~v~~~~~ 154 (434) T protein:vir:43 76 PLGVYERKADGSRVDARSFPLYDVVHNSPNDDMTAFQFWQAMVASMLLWGNAYAEIRRA-AGRPAALDFLLPSRVDLECD 154 (434) T ss_pred ceEEEEEcCCCccccccccHHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCcceEEEEc Confidence 111 00000011112 223579999886 56778889999999999999887 69999999999999987765 Q ss_pred Cc--e-eEEEcCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCC Q lcl|Aclame:pro 140 ED--V-YWWVPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQ 216 (344) Q Consensus 140 ~~--~-~~~~~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~ 216 (344) .+ . |++...+|..+.|+++||||+|.++ .++++|+||+..++.++.++.++++|+.++|+||++|++||+++ +.+ T Consensus 155 ~~g~~~y~~~~~~g~~~~~~~~eVih~~~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~-~~l 232 (434) T protein:vir:43 155 ENGRLKYFYTTKKGARREIERTNMLHIPAFT-LDGRIGLSAIRYGVDVFGSVMSAEDAANGTFKNGLLPTVAFKVD-RIL 232 (434) T ss_pred CCCeEEEEEEecCceEEEEccccEEEecCcC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEecC-CCC Confidence 44 2 4445567888999999999999875 57899999999999999999999999999999999999999976 578 Q ss_pred CHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhcccccccc Q lcl|Aclame:pro 217 DRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVG 296 (344) Q Consensus 217 ~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~ 296 (344) ++++.+++|+.|+++.|..|+++++|+ ++|++|+|++.++.|+||+|++++++++||++|||||++||+...++. T Consensus 233 ~~e~~~~~r~~~~~~~g~~nag~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~ 307 (434) T protein:vir:43 233 QPAQREEFREYVKSVSGAMNSGRSPVL-----EQGITPETIGINPVDAQLLETREHGVIEICRWFGVPPWMIGQTDKGSN 307 (434) T ss_pred CHHHHHHHHHHHHHhcCccccCCcccc-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCcc Confidence 999999999999999999999999998 568999999999999999999999999999999999999999776667 Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 297 SLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 297 ~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +++|+|++.+.|+++||.|++.+||+ +|.+|.....+ ..|.++||-- T Consensus 308 ~~s~~e~~~~~f~~~~L~P~~~~ie~~ln~kL~~~~~~-~~~~~~fd~~ 355 (434) T protein:vir:43 308 WGTGLEQQMLAFLTFSISSITNQIQQCVNKRLLTAPER-IRYYAEFSLE 355 (434) T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhh-cCceEEEech Confidence 78999999999999999999999986 99999765433 4577777754 No 28 >protein:vir:1380 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612832;genbank:gi:20065966;genbank:GeneID:935782 Probab=100.00 E-value=1.9e-60 Score=347.96 Aligned_cols=325 Identities=13% Similarity=0.157 Sum_probs=239.7 Q ss_pred CCCCCC---CCC-Ccchhhccccccce-----eEEE-cCCc-------eeccCcchhhhhhhhhccchhhhccccHHHHH Q lcl|Aclame:pro 1 MSKKKG---KTP-QPAAKTMTASAPKM-----EAFT-FGEP-------VPVLDRRDILDYVECISNGRWYEPPVSFTGLA 63 (344) Q Consensus 1 m~~~~~---~~~-~~~~~~~~~~~~~~-----~~f~-~~~p-------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 63 (344) |..... |+. .+...........+ ..+. ||.+ ...+...+++.|+.+..+. +-+.|+.++. T Consensus 1 MG~f~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~al~~~~v~~ci~~ia~~-iA~lp~~~~~-- 77 (422) T protein:vir:13 1 MGFLRGLFNKKNNNDEKRSNYDEDIGIDISDSNFWEKFGIKLNFSVRGKRALKENTVYVCTKIRAES-IGKLSLKIYK-- 77 (422) T ss_pred CchhhhhhhccCCccchhhhhhhccccccCcchhhhhccccCCcccchhhhhccHHHHHHHHHHHHh-hhhCceEEEe-- Confidence 443321 111 11110000000000 0010 1111 1113333444444443322 2334443321 Q ss_pred HHHhhhhhhhhhhhhcchhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc- Q lcl|Aclame:pro 64 KSLRAAVHHSSPIYVKRNILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED- 141 (344) Q Consensus 64 ~~~~~~~~~~~~i~~k~n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~- 141 (344) ... ....... .-+...+|||++++. ||+.++.+++++||||++++|+..|+|++|+|++|..|++..+.+ T Consensus 78 ----~~~---~~~~~~~-~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~~~~~~~~ 149 (422) T protein:vir:13 78 ----DKE---EYKEHEL-YYLLRYKPNPLMSSINFWKCLETQRTLKGNAYAYIERDRKGKIIGLYPINSDNVTKIIDDDN 149 (422) T ss_pred ----cCc---ccccchH-HHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEcCCc Confidence 000 0000011 112335799999875 567888999999999999999999999999999999999876543 Q ss_pred -------eeEEE-cCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecC Q lcl|Aclame:pro 142 -------VYWWV-PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTD 213 (344) Q Consensus 142 -------~~~~~-~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~ 213 (344) .+|.+ ..+|....++++||||++.+.+.++++|+||+..+.+++.++.++++++.++|+||++|+|||+++ T Consensus 150 ~~~~~~~~~y~~~~~~g~~~~~~~~eiih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~- 228 (422) T protein:vir:13 150 FLSSLSKVWYVVTDKNGKEHKLLPDEMLHFIGDITLDGLIGIKPLDYLRCTIENGRATQEFINKFFKNGLSIKGIVQYV- 228 (422) T ss_pred ceeccceEEEEEEeCCCeEEEEcccceEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeC- Confidence 23333 456788899999999999877789999999999999999999999999999999999999999986 Q ss_pred CCCCHHHHHHHHHHHHH-hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhcccc Q lcl|Aclame:pro 214 AVQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKP 292 (344) Q Consensus 214 ~~~~~e~~~~l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~ 292 (344) +.+++++.+++++.|++ +.|.+|+++++|+ +.|++|+|++.+++|+||+|++++++++||++|||||+++|+. T Consensus 229 ~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl-----~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVpp~~lg~~- 302 (422) T protein:vir:13 229 GDLDEKAKKIFKKEFESMSNGLENAHSISLL-----PFGYQFQPISLSMADAQFLENSKLTKRELAATFGMKSYHLNDL- 302 (422) T ss_pred CCCCHHHHHHHHHHHHHHhcCccccCCceec-----CCCceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC- Confidence 47899999999999976 4677899999998 5689999999999999999999999999999999999999975 Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 293 ENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 293 ~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +.++++|+|++.+.|+++||.|++++||+ +|.+|..+..+..+|+++||-. T Consensus 303 -~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~i~fd~~ 354 (422) T protein:vir:13 303 -ERATFNNLTEQQKDFYVTTLQSSLTVYEQEIQDKLFSQYETLQDVKAEFNVD 354 (422) T ss_pred -CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhcCCceEEeech Confidence 44689999999999999999999999986 9999988765556788888755 No 29 >protein:vir:3868 Length: 417 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680485;swissprot:trembl:q8ltc2;genbank:gi:22296525;interpro:IPR006427;interpro:IPR006944;uniprot:Q8LTC2;genbank:GeneID:951699 Probab=100.00 E-value=3.1e-60 Score=346.86 Aligned_cols=322 Identities=15% Similarity=0.143 Sum_probs=240.9 Q ss_pred CCCCCCCCCCcchhhccc-cccceeEEEcCC-c--eeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTA-SAPKMEAFTFGE-P--VPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPI 76 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~-p--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i 76 (344) |+..+++.......-... ..+.. ..++.+ . ...|...+++.|+....+. .-+.|+.++. .... ... T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~Al~~~~V~~cv~~ia~~-iA~lp~~~~~------~~~~--~~~ 70 (417) T protein:vir:38 1 MKLFRGLATEVDPHWADHLLDSGV-IPSFRGGYLGISALRNSDVLTAVSIVSGD-VSRFPLVITD------SSTD--EVI 70 (417) T ss_pred CccccccccCCCccchhhhccccc-ccccCCceechhhcccHHHHHHHHHHHHh-hccCeeEEEE------cCCc--cee Confidence 998765433222111000 01111 112222 1 1244566677776665543 3345554321 1100 001 Q ss_pred hhcchhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCC-CceEEEEEeCcceeecccc--CceeEEE--cCCc Q lcl|Aclame:pro 77 YVKRNILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTT-GKVIRLETSPAKYTRRGVE--EDVYWWV--PSFN 150 (344) Q Consensus 77 ~~k~n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~-G~~~~L~pl~~~~~~~~~~--~~~~~~~--~~~~ 150 (344) ....-..+...+|||++++. ||+.++.+++++||||++++|+.. |.|..|+|++|..|++... +..+|.+ ..++ T Consensus 71 ~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~y~~i~r~~~g~~~~~l~~l~p~~v~v~~~~~~~~~y~~~~~~~~ 150 (417) T protein:vir:38 71 DLANIEYLMNTKVNKRLSAYQWKFPMMVNAILTGNAYSRIVRDPITNEPAMFEFYAPSQTQVDTSDPDNIIYRFTPYNSS 150 (417) T ss_pred ccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCEEEEEEEeCCceEEEEEcCCCeEEEEEEEcCCc Confidence 11111122335799999875 567888999999999999999864 6799999999999987543 3334444 3455 Q ss_pred eEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 151 EPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVK 230 (344) Q Consensus 151 ~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~ 230 (344) ....++++||||+|.++ .++++|+||+.++.++|.++.++++|+.++|+||++|++||.++ +.+++++.+++|++|++ T Consensus 151 ~~~~~~~~dviH~r~~~-~d~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~-~~l~~e~~~~~~~~~~~ 228 (417) T protein:vir:38 151 MQKVCGFEDVIHWKFFS-YDTIMGRSPLLSLGDEIGLQESGVSTLQKFFKSGLKGSIIKAKE-SRLSAEARQKIREDFER 228 (417) T ss_pred EEEEecCcceEEecCCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeC-CCCCHHHHHHHHHHHHH Confidence 66789999999999875 57899999999999999999999999999999999999999865 57899999999999988 Q ss_pred hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHH Q lcl|Aclame:pro 231 SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVR 310 (344) Q Consensus 231 ~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~ 310 (344) ..++.|+++++|+ +.|++|+|++++++|+||+|++++++++||++|||||++||. .++++|++++.+.|++ T Consensus 229 ~~~g~n~g~~~vl-----~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~----~~~~s~~e~~~~~~~~ 299 (417) T protein:vir:38 229 AQAGADAGSPIIV-----DATMDYQPLEVDTNVLNLINSNNYSTAQIAKALRVPAYRLAQ----NSPNQSVKQLADDYIR 299 (417) T ss_pred HhcccccCCceec-----cCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHhCC----CCcchhHHHHHHHHHH Confidence 7777899999998 568999999999999999999999999999999999999983 4578999999999999 Q ss_pred HHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 311 NELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 311 ~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +||.|+++.||+ ||.+|.....+ ..|+++||-- T Consensus 300 ~tl~P~~~~ie~~l~~~Ll~~~~~-~~~~~~fd~~ 333 (417) T protein:vir:38 300 NDLPFYFEPITSEFELKLLDDAQR-HQYCIGFDTK 333 (417) T ss_pred HHHHHHHHHHHHHHHhhhcChhhc-ccceEEechh Confidence 999999999985 99999876544 3567777643 No 30 >protein:vir:8100 Length: 466 # NCBI annotation: gp4 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817681;genbank:gi:29566112;genbank:GeneID:1259306 Probab=100.00 E-value=1.6e-60 Score=348.44 Aligned_cols=334 Identities=14% Similarity=0.109 Sum_probs=232.7 Q ss_pred CCCCC---CCCCCc---chhhccc------cccceeEEEcCCceec--cCcchhh----hhhhhhccchhhhccccHHHH Q lcl|Aclame:pro 1 MSKKK---GKTPQP---AAKTMTA------SAPKMEAFTFGEPVPV--LDRRDIL----DYVECISNGRWYEPPVSFTGL 62 (344) Q Consensus 1 m~~~~---~~~~~~---~~~~~~~------~~~~~~~f~~~~p~~~--~~~~~~~----~~~~~~~~~~~~~~p~~~~~l 62 (344) |+--- ++...+ +.....+ ....-..++|++|... +.+.+.. ++. ......+...|.....+ T Consensus 1 M~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~-~v~~~~a~~~~~v~~~i 79 (466) T protein:vir:81 1 MRLIDRLLSTRGAAPRMSIDDYAQMLNEFAFNGIGYGFGGGVPRIQQTLAGPSTELAPDTFV-GLATQAYQANGPVFACM 79 (466) T ss_pred CchhHHHhhccCcccccchhhhhhhhhhhhccccccccccccHHHHHhhccccccccCcccc-ccchhhhhccHHHHHHH Confidence 44211 111111 0000000 0011123555555321 1111100 010 01111122222222221 Q ss_pred HHHHhhhhhhhhhhhhcc------------hhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCC--------C Q lcl|Aclame:pro 63 AKSLRAAVHHSSPIYVKR------------NILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTT--------G 121 (344) Q Consensus 63 ~~~~~~~~~~~~~i~~k~------------n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~--------G 121 (344) ..+... ..+.++..++ ........|||+++.. ||+.++.+++++||||++++|+.. | T Consensus 80 ~~Ia~~--ia~lp~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~g~l~~~~~g 157 (466) T protein:vir:81 80 LVRQLV--FSSVRFRWQRLRDGKPSDTFGSRDLQILETPWKGGTTQDMLSRMIQDADLAGNSYWTIVDGEFVRMRPDWVD 157 (466) T ss_pred HHHHHh--hccCceEEEEecCCceeeccccHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEecCccccccccCc Confidence 111111 1111111111 1112334899999875 567888999999999999999765 5 Q ss_pred ceEEEEEeCcceeeccccCce----eEEEcC-----CceEEEEecccEEEecCC-CCCCCcccccchhhhHHHHHHHHHH Q lcl|Aclame:pro 122 KVIRLETSPAKYTRRGVEEDV----YWWVPS-----FNEPTAFAPGSVFHLLEP-DINQELYGLPEYLSALNSAWLNESA 191 (344) Q Consensus 122 ~~~~L~pl~~~~~~~~~~~~~----~~~~~~-----~~~~~~~~~~eIih~~~~-~~~~~~~G~sp~~~~~~~i~~~~~a 191 (344) .+++|+|+++..|++..+.+. +|.+.. +++...|+++||||||.+ ++.+++||+||+.+++++|.++.++ T Consensus 158 ~~~~l~~l~~~~v~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~dviHir~~~~~~d~~~G~s~i~~~~~~i~~~~a~ 237 (466) T protein:vir:81 158 VVVEERMVRGGRGELGGGQLGWRKVGYLYTEGGRQSGNESVGFLAEDVVHFAPIPDPLASYRGMSWLTPILREIRADQAM 237 (466) T ss_pred ceeEEEEecCcceEEEEcCCCceEEEEEEEecCcccccceeeeccccEEEEcCCCCcccccccccHHHHHHHHHHHHHHH Confidence 589999999999988765442 233332 235678999999999965 5788999999999999999999999 Q ss_pred HHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHH-hhcccccccccccCCCCccccceeeeccCChhHHHHHHHH Q lcl|Aclame:pro 192 TLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIK 270 (344) Q Consensus 192 ~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~ 270 (344) ++|+.++|+||++|+|||+++ +.+++|+++++++.|++ +.|.+|+++++|+ +.|++|+|++.+++|+||+|++ T Consensus 238 ~~~~~~~f~ng~~p~gil~~~-~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl-----~~g~~~~~l~~~~~d~q~le~~ 311 (466) T protein:vir:81 238 SKHQAKFFDNGATVNLVIKHN-PMADPAAVKKWADEVNSKHAGVDNAWKNLNL-----YPGADADVVGSNLQEIDFKNVR 311 (466) T ss_pred HHHHHHHHhcCCCcceEEecC-CCCCHHHHHHHHHHHHHHhcCccccccceEc-----CCCceEEEccCChhHHHHHHHH Confidence 999999999999999999865 57899999999999975 5778999999998 5689999999999999999999 Q ss_pred HhhHHHHHHHhcCChHHhccccc-cccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 271 KASAADLLDAHRIPFQLMGGKPE-NVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 271 ~~~~~~I~~~fgVPp~llG~~~~-~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) ++++++||++|||||++||+..+ +.+|++|+|++.+.|+++||.|++++||+ ||++|.....+. .++++||.- T Consensus 312 ~~~~~~Ia~~fgVPp~~lG~~~~~~~st~sn~eq~~~~f~~~tl~P~~~~ie~~l~~~L~~~~~~~-~~~~~f~~~ 386 (466) T protein:vir:81 312 GGGETRIAAAAGVPPVIVGLSEGLAAATYSNYGQARRRLADGTAHPLWQNLSGCIGHVMPDMGPDV-RLWYDADDV 386 (466) T ss_pred HHHHHHHHHHhCCCHHHcccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCc-ceEEEecch Confidence 99999999999999999998764 56899999999999999999999999996 999997643332 255666644 No 31 >protein:vir:7853 Length: 518 # NCBI annotation: gp10 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817460;genbank:gi:29565889;genbank:GeneID:1259085 Probab=100.00 E-value=4.9e-60 Score=345.74 Aligned_cols=327 Identities=14% Similarity=0.178 Sum_probs=233.3 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHH---HHHHHhhhhhh----- Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTG---LAKSLRAAVHH----- 72 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---l~~~~~~~~~~----- 72 (344) |=.-........+.+... +.+.-.-++.|..-.. +..... +..+.|.+.|..+.. +++.+...+.+ T Consensus 1 ~~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~~g~~---~~~~~~-~~~~~~~~~~~V~acV~~IA~~iA~lp~~l~~~~ 74 (518) T protein:vir:78 1 MLLANGQTLSAPAMAELS--PQMQDSYYYAPAVGMQ---LERQFS-LYGGIYKNQPWVRTVIAKRAQALARLPVKCMFTS 74 (518) T ss_pred CcccCceeeccchhhhhh--hhhhhcccccceecee---cccccc-hhhHHhhhhHHHHHHHHHHHHhhccCceEEEEEc Confidence 655544433322211111 1111111122221111 100000 011112222222211 22222111111 Q ss_pred ---hhhhhhcchhhHHhhhcCCCCCH-HHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---eeEE Q lcl|Aclame:pro 73 ---SSPIYVKRNILASTFIPHPWLSQ-QDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---VYWW 145 (344) Q Consensus 73 ---~~~i~~k~n~~~~~~~pnp~~~~-~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---~~~~ 145 (344) .... ..+........|||+|+. +||+.++.++++.||+|++++|+..|++++|+|++|.+|++..+.+ .+|+ T Consensus 75 ~~~~~~~-~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~Vtv~~~~~~~~~~y~ 153 (518) T protein:vir:78 75 GDTETEE-HDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKRNSRTGRYEYY 153 (518) T ss_pred CCccccc-cchHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEECCCceEEEEcCCCCEEEEE Confidence 0000 001122345589999986 5678888999999999999999999999999999999998865532 2343 Q ss_pred EcC----CceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHH Q lcl|Aclame:pro 146 VPS----FNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDI 221 (344) Q Consensus 146 ~~~----~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~ 221 (344) +.. ++..+.|+++||||+|.++++...+|+||+.++.+++.++.++++|+.++|+||++|++||+++ +.+++++. T Consensus 154 ~~~~~~~~~~~~~~~~~eIiHir~~~~dg~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~Ng~~p~gvl~~~-~~ls~e~~ 232 (518) T protein:vir:78 154 FQAGAGVGTQLVSFADDEVVPIRFFNPDGLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHE-KRLSPEAQ 232 (518) T ss_pred EEecCCccceeEEecCCcEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecC-CCCCHHHH Confidence 332 3456789999999999998766678999999999999999999999999999999999999876 56899999 Q ss_pred HHHHHHHHH-hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhcccccccccccc Q lcl|Aclame:pro 222 EMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGD 300 (344) Q Consensus 222 ~~l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n 300 (344) +++++.|++ +.|.+|+++++|+ +.|++|+|++++++|+||+|++++++++||++|||||++||+.. .++++| T Consensus 233 ~~~k~~~~~~~~G~~nag~~~vL-----~~G~~~~~l~~~~~d~q~le~r~~~~~eIa~afgVPp~~lg~~~--~st~sn 305 (518) T protein:vir:78 233 QRLREQFDRAHAGSSNTGKTMVV-----EEGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILD--RATFSN 305 (518) T ss_pred HHHHHHHHHHhcCcccCCceeEc-----CCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCC--CCCchh Confidence 999999975 5677899999999 56899999999999999999999999999999999999999863 468999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 301 IEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 301 ~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +|++.+.|+++||.|++.+||+ ||++|.....+ .|.++||-- T Consensus 306 ~e~~~~~f~~~tL~P~~~~ie~eln~~L~~~~~~--~~~~~fd~~ 348 (518) T protein:vir:78 306 ISAQMRAFYRDTMAIPIARIQSAMDKYVGQYWVR--KNRMKFDID 348 (518) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC--cceEEeech Confidence 9999999999999999999986 99999765432 455666532 No 32 >protein:vir:99452 Length: 651 # NCBI annotation: hypothetical protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919077;genbank:gi:119757035;genbank:GeneID:4606105 Probab=100.00 E-value=1.9e-60 Score=348.06 Aligned_cols=332 Identities=16% Similarity=0.198 Sum_probs=256.1 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) |+-+|++..+..-++.. +...+-+--.|++- .+. .-.......+++||+++..|+++.+.++.|.+||..++ T Consensus 1 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~p~~~~~~L~~~~e~~~~~~~~i~~~~ 72 (651) T protein:vir:99 1 MTDTTGETQETKVHVEG---LGGEADLAKSPNST----QIP-DHRIQSHNVGVNPPYNPDRLAAFLELNETLATGIRKKS 72 (651) T ss_pred CCCccceeeeeEEEeec---cccccccccccccc----ccc-hhhhcccCCCCCCCCCHHHHHHHHhcChHHHHHHHHHh Confidence 99888776655544332 22222222233221 110 01122334589999999999999999999999999998 Q ss_pred hhhHHh---hh-----------------------------------cCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCC Q lcl|Aclame:pro 81 NILAST---FI-----------------------------------PHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTG 121 (344) Q Consensus 81 n~~~~~---~~-----------------------------------pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G 121 (344) +.++.. +. .|+.++.. +++.++.|++.+||+|++++|+..| T Consensus 73 ~~iag~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~~t~~~i~~~~~~Dle~tGna~ieiIrn~~g 152 (651) T protein:vir:99 73 RYEVGFGFDLVPAQGVDGDDASDAQREVARNFWRGRSSRWQTGPNQAKTPATPERVKELARQDYHGVGWLALEMLTDIEG 152 (651) T ss_pred hhhhccCceeeecccCCCCccchHHHHHHHHHhhccchhhcccccccCCCCCHHHHHHHHHHHHHHHhhHhhhhhhcCcc Confidence 876642 11 13444554 4566778999999999999999999 Q ss_pred ceEEEEEeCcceeeccccCc----------------------------------eeE----------------------- Q lcl|Aclame:pro 122 KVIRLETSPAKYTRRGVEED----------------------------------VYW----------------------- 144 (344) Q Consensus 122 ~~~~L~pl~~~~~~~~~~~~----------------------------------~~~----------------------- 144 (344) +|++|+++++..+|...+.. .|+ T Consensus 153 ~pv~L~~lp~~~~Rv~~~~~~~~~~~~~ll~~~pn~~~~~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~ 232 (651) T protein:vir:99 153 RPVGLAYVPARTVRVRRPQNRFDQPRHPEEGRYVDGDVADIASRGYVQIRNGNRRYFGEAGDRYRGQEVVIDESGDEPTI 232 (651) T ss_pred chhhhhhcChhheeeecccccccchhhhhhhcccccccchhHHHHHHHHHhcCcceEEEeeccccceeeeeccCCcceeE Confidence 99999999998776432210 000 Q ss_pred ----------------------EEcCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHcc Q lcl|Aclame:pro 145 ----------------------WVPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENG 202 (344) Q Consensus 145 ----------------------~~~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng 202 (344) .....+....++++||||+|.+++.+++||+||+..++.++.++.++++|+.++|+|| T Consensus 233 ~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~eViHir~~~~~~g~~G~spl~~a~~~i~~a~~a~~~~~~~f~NG 312 (651) T protein:vir:99 233 RYREDEESEREPIFVDRETGDVTTGDANGLENRPANELIFIPNPSILEDDYGVPDWVSAIRTISADEAAKDYNRDFFDND 312 (651) T ss_pred EeccCcceeeeeecccceeeeEEEcCCCceeEecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 0111122345788999999999988999999999999999999999999999999999 Q ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCC------ccccceeeeccCCh-hHHHHHHHHHhhHH Q lcl|Aclame:pro 203 AHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQG------KADGIKIIPLSEVA-TKDDFFNIKKASAA 275 (344) Q Consensus 203 ~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~------~~~g~~~~pl~~~~-~d~qf~e~~~~~~~ 275 (344) ++|++||+++++.+++++++++++.|++.. +|+++++||..++ .+.|++|+||++++ +|+||+|+++++++ T Consensus 313 ~~p~gil~~~~~~ls~e~~~~lr~~~~~~~--~nagk~~vL~~~~~~~~~~~~~g~~~~pls~~~~~D~qfle~r~~~~~ 390 (651) T protein:vir:99 313 TIPRMVIKVTGGELSEESKRDLRQMLNGLR--EESHRAVVLEVEKFQSQLDEDVEIELEPMGQGISEEMDFRQFREKNEH 390 (651) T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHHHh--ccCCceEEeecccccccccccCCceEEEcCcCchhhHHHHHHHHHHHH Confidence 999999999988899999999999998754 4788888886532 34599999999987 59999999999999 Q ss_pred HHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccc--cccccCCC Q lcl|Aclame:pro 276 DLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKN--YSLDTDNG 344 (344) Q Consensus 276 ~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~--y~l~~d~g 344 (344) +||++|||||++||+. +.++++|+|++.+.|+++||.|++.+||+ ||.+|..+..+..+ ++++|+.- T Consensus 391 eIa~afgVPp~~lG~~--~~~~~sn~E~~~~~f~~~tL~P~~~~ie~eln~kLl~~~e~~~~~~i~~ef~~~ 460 (651) T protein:vir:99 391 EIAKVLEVPPVKIGVT--DSANRSNSDQQDKDFALEVIQPEQHTFAEWLYQIIHQQALGVTDWTIEYELRGA 460 (651) T ss_pred HHHHHhCCCHHHhccC--CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccCceEEEEeccc Confidence 9999999999999986 34689999999999999999999999996 99999776544333 35566543 No 33 >protein:vir:102080 Length: 429 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512313;genbank:gi:89152482;genbank:GeneID:3953073 Probab=100.00 E-value=2.4e-60 Score=347.43 Aligned_cols=327 Identities=15% Similarity=0.193 Sum_probs=239.7 Q ss_pred CCCCCC------CCCCcchhhccccccce-eEEEcCC------ceeccCcchhhhhhhhhccchhhhccccHHHHHHHHh Q lcl|Aclame:pro 1 MSKKKG------KTPQPAAKTMTASAPKM-EAFTFGE------PVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLR 67 (344) Q Consensus 1 m~~~~~------~~~~~~~~~~~~~~~~~-~~f~~~~------p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~ 67 (344) |+.-++ |...+ ....+...... ..+.... +...+...+++.|+.+..+. +-+.|+.++ + T Consensus 1 M~~~~~~f~~~~r~~~~-~~~~~~~~~~~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~-ia~l~~~~~------~ 72 (429) T protein:vir:10 1 MDSVKKFFNFEKRQTSQ-VIELNKDDEKLLEWLGISPSTISVKGKNALKVATVFACIKILSES-VSKLPLKIY------Q 72 (429) T ss_pred CchhhhhhcccccCccc-ccccCCChHHHHHHhcCCCCcceechhhhhccHHHHHHHHHHHHh-hccCceEEE------E Confidence 554432 21111 11111111100 0111000 11122333344444333322 222332211 1 Q ss_pred hhhhhhhhhhhcch-hhHHhhhcCCCCCH-HHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---- Q lcl|Aclame:pro 68 AAVHHSSPIYVKRN-ILASTFIPHPWLSQ-QDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---- 141 (344) Q Consensus 68 ~~~~~~~~i~~k~n-~~~~~~~pnp~~~~-~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---- 141 (344) ....... ...++. .-+...+|||++++ +||+.++.+++++||||++++|+..|++++|+|+++..|++..+.. T Consensus 73 ~~~~~~~-~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~~~~~ 151 (429) T protein:vir:10 73 EDEYGIQ-RGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLN 151 (429) T ss_pred ecCCcee-eccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCccccc Confidence 1100000 000100 11222479999987 5667888999999999999999999999999999999998765432 Q ss_pred ----eeEEEcCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCC Q lcl|Aclame:pro 142 ----VYWWVPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQD 217 (344) Q Consensus 142 ----~~~~~~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~ 217 (344) .+|.+..+|..+.|+++||||+|.+.+.++++|+||+..+..++.++.++++|+.++|+||++|++||+++ ..++ T Consensus 152 ~~~~~~~~~~~~g~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~-~~l~ 230 (429) T protein:vir:10 152 SKTKMWYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYV-GDLN 230 (429) T ss_pred ccceEEEEEccCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcC-CCCC Confidence 35777788888999999999999887889999999999999999999999999999999999999999976 4689 Q ss_pred HHHHHHHHHHHHH-hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhcccccccc Q lcl|Aclame:pro 218 RNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVG 296 (344) Q Consensus 218 ~e~~~~l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~ 296 (344) +++.+++++.|++ +.|..|+++++|+ +.|++|+|++.+++|+||+|++++++++||++|||||.+||+. +.+ T Consensus 231 ~e~~~~~~~~~~~~~~g~~n~~~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~--~~~ 303 (429) T protein:vir:10 231 EDAKKVFRENFESMSSGLQNSHRIALM-----PVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDL--SKA 303 (429) T ss_pred HHHHHHHHHHHHHHhccccccCceeec-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC--CCC Confidence 9999999999976 5667999999998 5689999999999999999999999999999999999999975 446 Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 297 SLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 297 ~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +++|++++.+.|++.+|.|++..||+ +|++|..+..+-.+|+++||-- T Consensus 304 ~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~kl~~~~~~~~g~~~~fd~~ 352 (429) T protein:vir:10 304 TLNNIEQQQQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVD 352 (429) T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeech Confidence 89999999999999999999999986 9999977655555677777643 No 34 >protein:vir:4454 Length: 414 # NCBI annotation: Portal Protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700377;genbank:gi:23505449;genbank:GeneID:955656 Probab=100.00 E-value=4.7e-60 Score=345.86 Aligned_cols=323 Identities=14% Similarity=0.188 Sum_probs=236.9 Q ss_pred CCCCC---CCCCCcchhhccccccceeEEE-----cCC----ceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhh Q lcl|Aclame:pro 1 MSKKK---GKTPQPAAKTMTASAPKMEAFT-----FGE----PVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRA 68 (344) Q Consensus 1 m~~~~---~~~~~~~~~~~~~~~~~~~~f~-----~~~----p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 68 (344) |..-+ +|+.... .+....-...+. +.. ++..+...+++.|+.++.+. +-+.|+.++.. T Consensus 1 Mg~f~~lf~r~~~~~---~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~Ia~~-ia~~p~~~~~~------ 70 (414) T protein:vir:44 1 MVFFSGLFQRKSDAP---VTTPAELADAIGLSYDTYTGKQISSQRAMRLTAVFSCVRVLAES-VGMLPCNLYHL------ 70 (414) T ss_pred CchhhhhhccCccCc---ccchhhHhHhhccCccccCCceechhhhhccHHHHHHHHHHHHH-hccCceEEEEe------ Confidence 66543 2211111 111110011111 111 12233444556666555443 33444433211 Q ss_pred hhhhhhhhhhcchhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc--eeE- Q lcl|Aclame:pro 69 AVHHSSPIYVKRNILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--VYW- 144 (344) Q Consensus 69 ~~~~~~~i~~k~n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~--~~~- 144 (344) +...........-..+...+|||+++.. ||+.++.+++++||||++++|+ .|+|++|+|++|..|.+..+.. .+| T Consensus 71 ~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gna~~~i~~~-~g~~~~L~~l~~~~v~~~~~~~~~~~y~ 149 (414) T protein:vir:44 71 NGSLKQRATGERLHKLISTHPNGYMTPQEFWELVVTCLCLRGNFYAYKVKA-FGEVAELLPVDPGCVVPKLNSSWEPVYQ 149 (414) T ss_pred cCCceeecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCceEEEEECCCCcEEEE Confidence 1100000000000122335799999875 5677888999999999999987 5999999999999998765433 334 Q ss_pred EEcCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHH Q lcl|Aclame:pro 145 WVPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEML 224 (344) Q Consensus 145 ~~~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l 224 (344) ....+|....|+++||||+|.++ .+++||+||+..+.+++.++.++++|..++|+||++|++||+++ +.+++|+.+++ T Consensus 150 ~~~~~g~~~~~~~~evih~~~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~-~~l~~e~~~~~ 227 (414) T protein:vir:44 150 VTFPDGSTDVLSQEDIWHVRTLT-LDGLVGLNPIAYAREAISLAAATEEHGARLFSNGAVTSGVLRTE-QTLSDQAYERL 227 (414) T ss_pred EEecCceEEEEccccEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeC-CCCCHHHHHHH Confidence 44456778899999999999875 57899999999999999999999999999999999999999976 46899999999 Q ss_pred HHHHHH-hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHH Q lcl|Aclame:pro 225 RENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEK 303 (344) Q Consensus 225 ~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~ 303 (344) +++|++ +.|.+|+++++++ +.|++|+|++.+++|+||+|.+++++++||++|||||++||+. +.++++|+|+ T Consensus 228 ~~~~~~~~~g~~n~~~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~~--~~~t~~n~e~ 300 (414) T protein:vir:44 228 KKDFEERHTGLGNAHRPMIL-----EMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNT--DRATFNNIEE 300 (414) T ss_pred HHHHHHHhcCccccCcceec-----CCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHhCCC--CCCCcccHHH Confidence 999965 5677999999998 5689999999999999999999999999999999999999985 4578999999 Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 304 VAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 304 ~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +.+.|+++||.|+++.||+ ||.+|..+..+ ..|.++||-- T Consensus 301 ~~~~~~~~~l~P~~~~ie~~ln~~L~~~~~~-~~~~i~fd~~ 341 (414) T protein:vir:44 301 LGLGFINYSLVPYLTRIEQRINTGLVRKSKQ-GVFYAKFNAG 341 (414) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcccc-CceEEEEech Confidence 9999999999999999986 99999776433 4566666543 No 35 >protein:vir:5737 Length: 419 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892048;genbank:gi:33770511;goa:Q7Y412;interpro:IPR006427;interpro:IPR006944;uniprot:Q7Y412;genbank:GeneID:1732929;interpro:IPR010994 Probab=100.00 E-value=4.8e-60 Score=345.80 Aligned_cols=326 Identities=11% Similarity=0.105 Sum_probs=238.8 Q ss_pred CCCCCCCCCCcchh-hcccccc-ceeE-EEc----CCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAK-TMTASAP-KMEA-FTF----GEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHS 73 (344) Q Consensus 1 m~~~~~~~~~~~~~-~~~~~~~-~~~~-f~~----~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~ 73 (344) |...+.-+..+... ....... .... .+. -.++.++...+++.|+....+. +-+.|+.+ ++.+.... T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~ia~~-ia~lp~~~------~~~~~~g~ 73 (419) T protein:vir:57 1 MFIPQFWKGRPSENRVNWQVVPGGMRSSSSQAGVIITPETALALSAVRACVTLLAES-VAQLPCVL------YRRTENGG 73 (419) T ss_pred CcchhhhccCCccccccccccccccccccccCCceechHHhhccHHHHHHHHHHHHh-hccCceEE------EEEcCCCc Confidence 77655322222211 1111000 0000 000 0122234444455555444332 22344432 11111110 Q ss_pred hhhhhcch-hhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCce--eEEEcCC Q lcl|Aclame:pro 74 SPIYVKRN-ILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV--YWWVPSF 149 (344) Q Consensus 74 ~~i~~k~n-~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~--~~~~~~~ 149 (344) ..+...+. .-+...+|||+++.. ||+.++.+++++||||++++|+..|+|++|+|++|..|++..+.+. ||.+... T Consensus 74 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~pl~~~~v~v~~~~~g~~~y~~~~~ 153 (419) T protein:vir:57 74 REIAFDHPLHDLIRYQPNRKDTAFEYHEQTQGVLGLEGNSYSLIDRNGRGDITELIPINPHKVIVLKGPDGMPYYDIPSI 153 (419) T ss_pred eeccccchHHHHHhhccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCcceEEEECCCceEEEEEcCC Confidence 00001111 112234799999875 5678889999999999999999999999999999999998776543 5666555 Q ss_pred ceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEec---CCCCCHHHHHHHHH Q lcl|Aclame:pro 150 NEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVT---DAVQDRNDIEMLRE 226 (344) Q Consensus 150 ~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~---~~~~~~e~~~~l~~ 226 (344) + ..+++++|||+|.++ .+++||+||+..+..++.++.++++|+.++|+||++|++||+++ ++.+++++++++++ T Consensus 154 ~--~~~~~~~vih~r~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~e~~~~~~~ 230 (419) T protein:vir:57 154 G--EILPMRMVHHIKSFS-LDGYIGTSPIQTNPDVLGLGIAVEQHAAQVFARGTTMSGVIERPFEAKAIASQAAVDAILA 230 (419) T ss_pred c--eEEchhhEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEecCcCCcccCHHHHHHHHH Confidence 5 468999999999885 56899999999999999999999999999999999999999975 34678999999999 Q ss_pred HHHH-hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHH Q lcl|Aclame:pro 227 NMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVA 305 (344) Q Consensus 227 ~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~ 305 (344) .|.+ +.|.+|+++++|+ +.|++|+|++.+++|+||+|++++++++||++|||||.+||+. +.++++|+|++. T Consensus 231 ~~~~~~~g~~nag~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~--~~~t~sn~e~~~ 303 (419) T protein:vir:57 231 KWTERYGGVRNAFSVGML-----QEGMTYKQLSQDNEKAQLLQSRQYTVNEVCRLYKVPPHMIQDL--QKSTNNNIEHQG 303 (419) T ss_pred HHHHHhccccccccceec-----CCCceEEEcCCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCC--CCCccccHHHHH Confidence 9965 5677899999998 5689999999999999999999999999999999999999975 446899999999 Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 306 KVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 306 ~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +.|+++||.|++..||+ +|++|..+..+ .+|.++||-- T Consensus 304 ~~f~~~~l~P~~~~ie~~l~~~ll~~~~~-~~~~i~fd~~ 342 (419) T protein:vir:57 304 LQYVIYTMLAILKRHESAMMRDLLLPSER-RDFYIEFNVS 342 (419) T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcccc-CCeEEEEech Confidence 99999999999999986 99998766544 4677777654 No 36 >protein:vir:101647 Length: 460 # NCBI annotation: phage portal protein # Family: family:all:26542 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112492;genbank:gi:53793592;uniprot:Q5ZGG1;genbank:GeneID:3101755 Probab=100.00 E-value=1.1e-59 Score=343.90 Aligned_cols=337 Identities=13% Similarity=0.106 Sum_probs=252.3 Q ss_pred CCCCCCCCCCcchhhcccccc---c--eeEEEcC--Cc-----eeccCcchhhhhhhhhccchhhhccccHHHHH----- Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAP---K--MEAFTFG--EP-----VPVLDRRDILDYVECISNGRWYEPPVSFTGLA----- 63 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~---~--~~~f~~~--~p-----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~----- 63 (344) |...-+|.-..++....+..+ . -..++.. .. ...+...+++.|+....+. ..+.|+.++... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~v~~~v~~ia~~-iA~lp~~v~~~~~~g~~ 79 (460) T protein:vir:10 1 MANRIIRALRELTGLDNKFNDAFIKYIGQTFTKYDNNGKTYLEQGYNINPDVYSCISQMAAK-TVAVPYTIKVVKDTKAY 79 (460) T ss_pred CchhHHHHHhhhhccCCCchHHHHHhhccccCCCccchhhhhHHHHhcchHHHHHHHHHHHh-hhhCceEEEeccCCccc Confidence 777666544333221111100 0 0111111 11 1133445667777665543 456666543211 Q ss_pred --------------HHHhhhhhhhhhhhhcch--hhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCC----CCc Q lcl|Aclame:pro 64 --------------KSLRAAVHHSSPIYVKRN--ILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYST----TGK 122 (344) Q Consensus 64 --------------~~~~~~~~~~~~i~~k~n--~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~----~G~ 122 (344) ...+....|.-....+.+ ......+|||+|+.. ||+.++.+++++||||++++|+. .|. T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~~~~~G~ 159 (460) T protein:vir:10 80 QQLNNLNISTKGLYSFTQSLQKNRLDTKAFSETEKAFPLESPNPTQTWADIYSLYKTYMRLNGNCYFYLMSPDDGINAGV 159 (460) T ss_pred hhhhhhhhhhhhhHHHHHHhhcchhhhcccchhHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCccCce Confidence 111111122111111111 122345799999875 56778889999999999999964 478 Q ss_pred eEEEEEeCcceeeccccCce----------eEEEcCCceEEEEecccEEEecCCCCC-----CCcccccchhhhHHHHHH Q lcl|Aclame:pro 123 VIRLETSPAKYTRRGVEEDV----------YWWVPSFNEPTAFAPGSVFHLLEPDIN-----QELYGLPEYLSALNSAWL 187 (344) Q Consensus 123 ~~~L~pl~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~eIih~~~~~~~-----~~~~G~sp~~~~~~~i~~ 187 (344) |++|+|++|..|++..+.+. +|.+..++....|+++||||+|.+++. +++||+||+..+++++.+ T Consensus 160 ~~~L~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~evih~r~~~~~~~~~~~~~~G~sp~~~~~~~i~~ 239 (460) T protein:vir:10 160 PSQMYVLPAHLIKIVLKDDINLLSTDSPIKSYMLIQGDQFIEFNEDEVIHTKYANPNFDLQGSHLYGMSPIRAILRNINS 239 (460) T ss_pred eEEEEEEcCceEEEEEcCCCceeeeeeeeeEEEEecCceeEEecccceEEEecCCCCcccccCccccccHHHHHHHHHHH Confidence 99999999999998766542 345566788899999999999987665 468999999999999999 Q ss_pred HHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHH-hhcccccccccccCCCCccccceeeeccCChhHHHH Q lcl|Aclame:pro 188 NESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDF 266 (344) Q Consensus 188 ~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf 266 (344) +.++++|+.++|+||+.|++|+. +++.+++++++++++.|++ +.|.+|+++++++ ++|++|+|++++++|+|| T Consensus 240 ~~~~~~~~~~~f~ng~~~~~i~~-~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl-----~~g~~~~~l~~~~~d~q~ 313 (460) T protein:vir:10 240 QNSTIDNNVKTMQNGGVFGFIHG-GSTGLTQPQADSLKQRLTEMDKSPDRLSQIAGA-----SGEIAFTKISLNTDELKP 313 (460) T ss_pred HHHHHHHHHHHHhcCCCcceeee-cCCCCCHHHHHHHHHHHHHHhcCccccCCceec-----CCCceEEEccCChhHHHH Confidence 99999999999999999999886 4568999999999999976 4677899999998 568999999999999999 Q ss_pred HHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 267 FNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 267 ~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +|++++++++||++|||||++||+..+++++++|+|++.+.|+++||.|++..||+ ||.+|.++..+...|.++||-. T Consensus 314 ~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~kl~~~~~~~~~~~i~~d~~ 392 (460) T protein:vir:10 314 FDYLKYDQKAICNALGWSDKLLNNNEGGGLNTGNLEEERKRVVTDNIQPDLVILKQAFDKKFIKRFKGYENAVIEWDIS 392 (460) T ss_pred HHHHHHHHHHHHHHhCCCHHHhCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCceEEeecc Confidence 99999999999999999999999987777889999999999999999999999985 9999988765556677777644 No 37 >protein:vir:10362 Length: 432 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858954;genbank:gi:32128419;genbank:GeneID:2648396 Probab=100.00 E-value=5.5e-60 Score=345.47 Aligned_cols=323 Identities=13% Similarity=0.130 Sum_probs=229.9 Q ss_pred CCCCCCCCCCcchhhccc---ccc-ceeEEEcCC----------ceeccCcchhhhhhhhhccchhhhccccHHHHHHHH Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTA---SAP-KMEAFTFGE----------PVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSL 66 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~---~~~-~~~~f~~~~----------p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 66 (344) |++.|.--..+.+.+... ..+ ......++. +..++...+++.|+....+. +-+.|+.++ T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~v~~~~al~~~~V~~~i~~Ia~~-ia~lp~~~y------ 82 (432) T protein:vir:10 10 LGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQA-IAAMPLTMY------ 82 (432) T ss_pred hhhhHhhcCCccccccccccccccCcchhhhhcccccccCcccchhhhhcchHHHHHHHHHHHh-hhhCceeEE------ Confidence 333222211111111100 000 000000110 01122233334444333222 223333221 Q ss_pred hhhhhhhhhhhhcchhh--HHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc-- Q lcl|Aclame:pro 67 RAAVHHSSPIYVKRNIL--ASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED-- 141 (344) Q Consensus 67 ~~~~~~~~~i~~k~n~~--~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~-- 141 (344) +.... .....+...+ +....|||++++. ||+.++.+++++||||++++|+ .|++++|+|+++..|++..+.+ T Consensus 83 ~~~~~--g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~-~g~~~~L~~l~~~~v~v~~~~~g~ 159 (432) T protein:vir:10 83 MRTPD--GRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT-DGRIESLQYLANDRLTITTDTKGN 159 (432) T ss_pred EecCC--CcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCCceEEEEcCCCc Confidence 11100 0001111111 2335799999875 5677888999999999999997 5999999999999998876543 Q ss_pred eeE-EEcCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHH Q lcl|Aclame:pro 142 VYW-WVPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRND 220 (344) Q Consensus 142 ~~~-~~~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~ 220 (344) .+| ....+|..+.|+++||||+|.++ .++++|+||+..+.+++.++.++++|..++|+||++|++||+++ +.+++|+ T Consensus 160 ~~y~~~~~~g~~~~~~~~~iih~~~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~-~~l~~e~ 237 (432) T protein:vir:10 160 TAYRYRRTDGQMIDIPKQQIWKIMGYS-LDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQID-RFLTDDQ 237 (432) T ss_pred EEEEEEecCceEEEEcCccEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecC-CCCCHHH Confidence 334 34567888899999999999875 57899999999999999999999999999999999999999976 5689999 Q ss_pred HHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhcccccc-ccccc Q lcl|Aclame:pro 221 IEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPEN-VGSLG 299 (344) Q Consensus 221 ~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~-~~~~~ 299 (344) +++++++|. |..|+++++|+ +.|++|+|++++++|+||+|++++++++||++|||||++||+...+ .++++ T Consensus 238 ~~~~~~~~~---~~~nag~~~vl-----~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~t~~~~s 309 (432) T protein:vir:10 238 YDSFAKKVS---GSVEAGRAPLL-----EGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGS 309 (432) T ss_pred HHHHHHHHh---hhhhCCCceec-----CCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCcccccc Confidence 999998874 56788999998 5689999999999999999999999999999999999999987643 34568 Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 300 DIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 300 n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) |+|++.+.|+++||.||+++||+ ||++|..+..+ ..|+++||-- T Consensus 310 n~e~~~~~f~~~tl~P~~~~ie~~ln~kL~~~~~~-~~~~~~fd~~ 354 (432) T protein:vir:10 310 GIESQQLGFLSMTLSPWLRRIEQSIALNLLSPAER-RRYFADFDTS 354 (432) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccc-CceEEEeech Confidence 99999999999999999999986 99999776443 4577777654 No 38 >protein:vir:1326 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi:9631143;uniprot:Q9ZXB2;genbank:GeneID:2715872 Probab=100.00 E-value=4.5e-60 Score=345.94 Aligned_cols=329 Identities=17% Similarity=0.198 Sum_probs=236.7 Q ss_pred CCCCCC---CCCCcchhhc--cccccc-eeEEEcCCc---------eeccCcchhhhhhhhhccchhhhccccHHHHHHH Q lcl|Aclame:pro 1 MSKKKG---KTPQPAAKTM--TASAPK-MEAFTFGEP---------VPVLDRRDILDYVECISNGRWYEPPVSFTGLAKS 65 (344) Q Consensus 1 m~~~~~---~~~~~~~~~~--~~~~~~-~~~f~~~~p---------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 65 (344) |..-+. |...++.... ..-.+. ...+.|+.+ ..+|...+++.|+.+..+. +-+.|+.++ T Consensus 1 Mg~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~V~~~~al~~~~V~~~v~~Ia~~-iA~lp~~~~----- 74 (457) T protein:vir:13 1 MGFWSALFGRGHSPALDGIEARAWEPYDPSIYNLGAVAASGETVTPHDALQVSAVFASVRLLSET-IATLPLSTY----- 74 (457) T ss_pred CchhhhhhcccccccccccccccccccchHHHhhcccccCCceechHHhhccHHHHHHHHHHHHh-hccCceEEE----- Confidence 774331 1111110000 000000 011222211 1233445566666655543 334444432 Q ss_pred HhhhhhhhhhhhhcchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---- Q lcl|Aclame:pro 66 LRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---- 141 (344) Q Consensus 66 ~~~~~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---- 141 (344) +........+....-..+....||.++..+||+.++.+++++||||++++++ .|+|++|+|++|..|++..+.. T Consensus 75 -~~~~~~~~~~~~~~l~~~ln~~~n~~t~~~f~~~~~~~lll~Gna~~~i~~~-~g~~~~l~~l~p~~v~v~~~~~~~~~ 152 (457) T protein:vir:13 75 -SKRGGSRKEIVTPEWLDYPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWQ-GPNIVGLDVLDPTKIHVHMVMVDGLR 152 (457) T ss_pred -EecCCcccccccchHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEccCceEEEEecCCCcc Confidence 1111111111111111112233455556678899999999999999999877 5999999999999998754322 Q ss_pred --e--eEEEcCCceE---EEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCC Q lcl|Aclame:pro 142 --V--YWWVPSFNEP---TAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDA 214 (344) Q Consensus 142 --~--~~~~~~~~~~---~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~ 214 (344) . .|.+..++.. ..|+++||||+|.+++.++++|+||+..+..+|.++.++++|+.++|+||++|++||+++ + T Consensus 153 ~~~~~~y~~~~~~~~~~~~~~~~~diih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~-~ 231 (457) T protein:vir:13 153 RKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGSKFFANGAMPGAVVEVP-G 231 (457) T ss_pred ceeEEEEEEecCCceeeEEeeCccceEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcC-C Confidence 1 2444444433 468899999999999887899999999999999999999999999999999999999986 5 Q ss_pred CCCHHHHHHHHHHHHH-hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccc Q lcl|Aclame:pro 215 VQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPE 293 (344) Q Consensus 215 ~~~~e~~~~l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~ 293 (344) .+++++++++++.|++ +.|.+|+++++|+ +.|++|+|++++++|+||+|++++++++||++|||||++||+..+ T Consensus 232 ~ls~e~~~~~~~~~~~~~~g~~nag~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~ 306 (457) T protein:vir:13 232 TMSEEGLARAREAWRAANSGVDNAHRVALL-----TEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATN 306 (457) T ss_pred CCCHHHHHHHHHHHHHHhcCccccCcceec-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCC Confidence 7899999999999976 5678999999999 568999999999999999999999999999999999999999877 Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 294 NVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 294 ~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) ++.+++|+|++.+.|+++||.||+++||+ ||.+|..+..+ +.|+++||-- T Consensus 307 ~~~~~sn~eq~~~~f~~~tl~P~~~~ie~~ln~~L~~~~~~-~~~~i~fd~~ 357 (457) T protein:vir:13 307 STSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETAD-RFRFVKFNLD 357 (457) T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc-CceeEEeech Confidence 77777999999999999999999999996 99999776433 4455666533 No 39 >protein:vir:102855 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338135;genbank:gi:77020228;genbank:GeneID:3703764 Probab=100.00 E-value=5.6e-60 Score=345.44 Aligned_cols=323 Identities=16% Similarity=0.215 Sum_probs=236.5 Q ss_pred CCC----------CCCCCCCcchhhccccccceeEEEcCC--c-------eeccCcchhhhhhhhhccchhhhccccHHH Q lcl|Aclame:pro 1 MSK----------KKGKTPQPAAKTMTASAPKMEAFTFGE--P-------VPVLDRRDILDYVECISNGRWYEPPVSFTG 61 (344) Q Consensus 1 m~~----------~~~~~~~~~~~~~~~~~~~~~~f~~~~--p-------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 61 (344) |+- +|+..+... ..+...+. .+.+.+ + ...+...+++.|+....+. .-+.|+.++ T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~--~~~~~~~~--~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~-ia~lp~~~~- 74 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVI--ELNKDDEK--LLEWLGISPSTISVKGKNALKVATVFACIKILSES-VSKLPLKIY- 74 (432) T ss_pred CChHHHHHHhcCccccCccccc--ccCCchHH--HHHHhCCCcCccccchhhhhccHHHHHHHHHHHHh-hccCceEEE- Confidence 222 111111111 11110000 000110 0 1122233334444333221 222333221 Q ss_pred HHHHHhhhhhhhhhhhhcchhh--HHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccc Q lcl|Aclame:pro 62 LAKSLRAAVHHSSPIYVKRNIL--ASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGV 138 (344) Q Consensus 62 l~~~~~~~~~~~~~i~~k~n~~--~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~ 138 (344) +..... ....+...+ +...+|||++++. ||+.++.+++++||||++++|+..|++++|+|++|..|++.. T Consensus 75 -----~~~~~~--~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~ 147 (432) T protein:vir:10 75 -----QEDEYG--IQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYI 147 (432) T ss_pred -----EecCCc--eeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEE Confidence 000000 000011112 2235799999875 567888999999999999999999999999999999998765 Q ss_pred cC--------ceeEEEcCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEE Q lcl|Aclame:pro 139 EE--------DVYWWVPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMY 210 (344) Q Consensus 139 ~~--------~~~~~~~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~ 210 (344) +. ..+|.+..+|..+.|+++||||+|.+.+.++++|+||+..++.++.++.++++|+.++|+||++|++||+ T Consensus 148 d~~~~~~~~~~~~y~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~ 227 (432) T protein:vir:10 148 DDVGLLNSKTKMWYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQ 227 (432) T ss_pred cCcccccccceEEEEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEE Confidence 43 2367777888889999999999998777899999999999999999999999999999999999999998 Q ss_pred ecCCCCCHHHHHHHHHHHHH-hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhc Q lcl|Aclame:pro 211 VTDAVQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMG 289 (344) Q Consensus 211 ~~~~~~~~e~~~~l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG 289 (344) ++ +.+++++.+++++.|++ +.|.+|+++++|+ +.|++|+|++.+++|+||+|.+++++++||++|||||++|| T Consensus 228 ~~-~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg 301 (432) T protein:vir:10 228 YV-GDLNEDAKKVFRENFESMSSGLQNSHRIALM-----PVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLN 301 (432) T ss_pred cC-CCCCHHHHHHHHHHHHHHhcccccCCcceec-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhC Confidence 76 46899999999999976 5677899999998 56899999999999999999999999999999999999999 Q ss_pred cccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 290 GKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 290 ~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +. +.++++|+|++.+.|+++||.|++..||+ +|++|..+..+-.+++++||-- T Consensus 302 ~~--~~~~~s~~e~~~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~ 355 (432) T protein:vir:10 302 DL--SKATLNNIEQQQQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVD 355 (432) T ss_pred CC--CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeech Confidence 75 45689999999999999999999999986 9999976544434566666543 No 40 >protein:vir:105002 Length: 432 # NCBI annotation: putative phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459967;genbank:gi:85701382;genbank:GeneID:3882143 Probab=100.00 E-value=5.6e-60 Score=345.44 Aligned_cols=323 Identities=16% Similarity=0.215 Sum_probs=236.5 Q ss_pred CCC----------CCCCCCCcchhhccccccceeEEEcCC--c-------eeccCcchhhhhhhhhccchhhhccccHHH Q lcl|Aclame:pro 1 MSK----------KKGKTPQPAAKTMTASAPKMEAFTFGE--P-------VPVLDRRDILDYVECISNGRWYEPPVSFTG 61 (344) Q Consensus 1 m~~----------~~~~~~~~~~~~~~~~~~~~~~f~~~~--p-------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 61 (344) |+- +|+..+... ..+...+. .+.+.+ + ...+...+++.|+....+. .-+.|+.++ T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~--~~~~~~~~--~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~-ia~lp~~~~- 74 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVI--ELNKDDEK--LLEWLGISPSTISVKGKNALKVATVFACIKILSES-VSKLPLKIY- 74 (432) T ss_pred CChHHHHHHhcCccccCccccc--ccCCchHH--HHHHhCCCcCccccchhhhhccHHHHHHHHHHHHh-hccCceEEE- Confidence 222 111111111 11110000 000110 0 1122233334444333221 222333221 Q ss_pred HHHHHhhhhhhhhhhhhcchhh--HHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccc Q lcl|Aclame:pro 62 LAKSLRAAVHHSSPIYVKRNIL--ASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGV 138 (344) Q Consensus 62 l~~~~~~~~~~~~~i~~k~n~~--~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~ 138 (344) +..... ....+...+ +...+|||++++. ||+.++.+++++||||++++|+..|++++|+|++|..|++.. T Consensus 75 -----~~~~~~--~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~ 147 (432) T protein:vir:10 75 -----QEDEYG--IQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYI 147 (432) T ss_pred -----EecCCc--eeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEE Confidence 000000 000011112 2235799999875 567888999999999999999999999999999999998765 Q ss_pred cC--------ceeEEEcCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEE Q lcl|Aclame:pro 139 EE--------DVYWWVPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMY 210 (344) Q Consensus 139 ~~--------~~~~~~~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~ 210 (344) +. ..+|.+..+|..+.|+++||||+|.+.+.++++|+||+..++.++.++.++++|+.++|+||++|++||+ T Consensus 148 d~~~~~~~~~~~~y~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~ 227 (432) T protein:vir:10 148 DDVGLLNSKTKMWYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQ 227 (432) T ss_pred cCcccccccceEEEEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEE Confidence 43 2367777888889999999999998777899999999999999999999999999999999999999998 Q ss_pred ecCCCCCHHHHHHHHHHHHH-hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhc Q lcl|Aclame:pro 211 VTDAVQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMG 289 (344) Q Consensus 211 ~~~~~~~~e~~~~l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG 289 (344) ++ +.+++++.+++++.|++ +.|.+|+++++|+ +.|++|+|++.+++|+||+|.+++++++||++|||||++|| T Consensus 228 ~~-~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg 301 (432) T protein:vir:10 228 YV-GDLNEDAKKVFRENFESMSSGLQNSHRIALM-----PVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLN 301 (432) T ss_pred cC-CCCCHHHHHHHHHHHHHHhcccccCCcceec-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhC Confidence 76 46899999999999976 5677899999998 56899999999999999999999999999999999999999 Q ss_pred cccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 290 GKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 290 ~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +. +.++++|+|++.+.|+++||.|++..||+ +|++|..+..+-.+++++||-- T Consensus 302 ~~--~~~~~s~~e~~~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~ 355 (432) T protein:vir:10 302 DL--SKATLNNIEQQQQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVD 355 (432) T ss_pred CC--CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeech Confidence 75 45689999999999999999999999986 9999976544434566666543 No 41 >protein:vir:107605 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338186;genbank:gi:77020175;genbank:GeneID:3703736 Probab=100.00 E-value=5.6e-60 Score=345.44 Aligned_cols=323 Identities=16% Similarity=0.215 Sum_probs=236.5 Q ss_pred CCC----------CCCCCCCcchhhccccccceeEEEcCC--c-------eeccCcchhhhhhhhhccchhhhccccHHH Q lcl|Aclame:pro 1 MSK----------KKGKTPQPAAKTMTASAPKMEAFTFGE--P-------VPVLDRRDILDYVECISNGRWYEPPVSFTG 61 (344) Q Consensus 1 m~~----------~~~~~~~~~~~~~~~~~~~~~~f~~~~--p-------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 61 (344) |+- +|+..+... ..+...+. .+.+.+ + ...+...+++.|+....+. .-+.|+.++ T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~--~~~~~~~~--~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~-ia~lp~~~~- 74 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVI--ELNKDDEK--LLEWLGISPSTISVKGKNALKVATVFACIKILSES-VSKLPLKIY- 74 (432) T ss_pred CChHHHHHHhcCccccCccccc--ccCCchHH--HHHHhCCCcCccccchhhhhccHHHHHHHHHHHHh-hccCceEEE- Confidence 222 111111111 11110000 000110 0 1122233334444333221 222333221 Q ss_pred HHHHHhhhhhhhhhhhhcchhh--HHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccc Q lcl|Aclame:pro 62 LAKSLRAAVHHSSPIYVKRNIL--ASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGV 138 (344) Q Consensus 62 l~~~~~~~~~~~~~i~~k~n~~--~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~ 138 (344) +..... ....+...+ +...+|||++++. ||+.++.+++++||||++++|+..|++++|+|++|..|++.. T Consensus 75 -----~~~~~~--~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~ 147 (432) T protein:vir:10 75 -----QEDEYG--IQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYI 147 (432) T ss_pred -----EecCCc--eeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEE Confidence 000000 000011112 2235799999875 567888999999999999999999999999999999998765 Q ss_pred cC--------ceeEEEcCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEE Q lcl|Aclame:pro 139 EE--------DVYWWVPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMY 210 (344) Q Consensus 139 ~~--------~~~~~~~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~ 210 (344) +. ..+|.+..+|..+.|+++||||+|.+.+.++++|+||+..++.++.++.++++|+.++|+||++|++||+ T Consensus 148 d~~~~~~~~~~~~y~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~ 227 (432) T protein:vir:10 148 DDVGLLNSKTKMWYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQ 227 (432) T ss_pred cCcccccccceEEEEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEE Confidence 43 2367777888889999999999998777899999999999999999999999999999999999999998 Q ss_pred ecCCCCCHHHHHHHHHHHHH-hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhc Q lcl|Aclame:pro 211 VTDAVQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMG 289 (344) Q Consensus 211 ~~~~~~~~e~~~~l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG 289 (344) ++ +.+++++.+++++.|++ +.|.+|+++++|+ +.|++|+|++.+++|+||+|.+++++++||++|||||++|| T Consensus 228 ~~-~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg 301 (432) T protein:vir:10 228 YV-GDLNEDAKKVFRENFESMSSGLQNSHRIALM-----PVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLN 301 (432) T ss_pred cC-CCCCHHHHHHHHHHHHHHhcccccCCcceec-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhC Confidence 76 46899999999999976 5677899999998 56899999999999999999999999999999999999999 Q ss_pred cccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 290 GKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 290 ~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +. +.++++|+|++.+.|+++||.|++..||+ +|++|..+..+-.+++++||-- T Consensus 302 ~~--~~~~~s~~e~~~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~ 355 (432) T protein:vir:10 302 DL--SKATLNNIEQQQQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVD 355 (432) T ss_pred CC--CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeech Confidence 75 45689999999999999999999999986 9999976544434566666543 No 42 >protein:vir:6240 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Probab=100.00 E-value=1e-59 Score=344.02 Aligned_cols=328 Identities=17% Similarity=0.205 Sum_probs=237.8 Q ss_pred CCCCC---CCCCCcchhhc--ccccc-ceeEEEcCCc---------eeccCcchhhhhhhhhccchhhhccccHHHHHHH Q lcl|Aclame:pro 1 MSKKK---GKTPQPAAKTM--TASAP-KMEAFTFGEP---------VPVLDRRDILDYVECISNGRWYEPPVSFTGLAKS 65 (344) Q Consensus 1 m~~~~---~~~~~~~~~~~--~~~~~-~~~~f~~~~p---------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 65 (344) |..-. +|...++.... ..-.+ ....+.|+.+ ..+|...+++.|+.+.... +-+.|+.++ T Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~ia~~-iA~lp~~~~----- 74 (457) T protein:vir:62 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSET-IATLPLSTY----- 74 (457) T ss_pred CchhhhhhccccccccccccccccccchhhhhhccccccCCceechHHhhccHHHHHHHHHHHHh-HhhCceEEE----- Confidence 66432 11111111000 00000 0112223322 1233445566666554442 334454432 Q ss_pred HhhhhhhhhhhhhcchhhHHhhhcCCCCCH-HHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc--- Q lcl|Aclame:pro 66 LRAAVHHSSPIYVKRNILASTFIPHPWLSQ-QDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--- 141 (344) Q Consensus 66 ~~~~~~~~~~i~~k~n~~~~~~~pnp~~~~-~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~--- 141 (344) +........+. ........-.||++++. +||+.++.+++++||||++++++ .|++.+|+|++|..|++..+.. T Consensus 75 -~~~~~~~~~~~-~~~~~~ll~~pn~~~t~~~f~~~~~~~l~l~Gna~~~i~~~-~g~~~~l~~l~p~~v~v~~~~~~~~ 151 (457) T protein:vir:62 75 -SKRGGTRKEID-TPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGL 151 (457) T ss_pred -EecCCcccccc-chHHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCcceEEEEeccCCc Confidence 11111111111 11112233467777765 67788999999999999999766 6999999999999988754321 Q ss_pred ---e--eEEEcCCce---EEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecC Q lcl|Aclame:pro 142 ---V--YWWVPSFNE---PTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTD 213 (344) Q Consensus 142 ---~--~~~~~~~~~---~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~ 213 (344) . .|.+...+. ...|+++||||+|.+++.+.++|+||+.+++.+|.++.++++|+.++|+||++|++||+++ T Consensus 152 ~~~~~~~y~~~~~g~~~~~~~~~~~eiih~r~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~- 230 (457) T protein:vir:62 152 RRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVP- 230 (457) T ss_pred cceeEEEEEEccCCceeEEEeeCccceEEecCCCCCCceecccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEcC- Confidence 1 233444433 2468999999999999887799999999999999999999999999999999999999986 Q ss_pred CCCCHHHHHHHHHHHHH-hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhcccc Q lcl|Aclame:pro 214 AVQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKP 292 (344) Q Consensus 214 ~~~~~e~~~~l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~ 292 (344) +.+++|+++++++.|++ +.|.+|+++++|+ +.|++|+|++++++|+||+|++++++++||++|||||++||+.. T Consensus 231 ~~ls~e~~~~~~~~~~~~~~G~~nag~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~ 305 (457) T protein:vir:62 231 GTMSEEGLARAREAWRAANSGVDNAHRVALL-----TEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDAT 305 (457) T ss_pred CCCCHHHHHHHHHHHHHHhcCccccCcceec-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCC Confidence 57899999999999976 5678999999999 56899999999999999999999999999999999999999987 Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 293 ENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 293 ~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +++.+++|+|++.+.|+++||.||+.+||+ ||++|..+..+ +.++++||-- T Consensus 306 ~~~~~~sn~eq~~~~f~~~~l~P~~~~ie~~ln~~L~~~~~~-~~~~i~fd~~ 357 (457) T protein:vir:62 306 NSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETAD-RFRFVKFNLD 357 (457) T ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccc-CceEEEeech Confidence 777777999999999999999999999986 99999876543 4566677643 No 43 >protein:vir:81152 Length: 411 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285809;genbank:gi:148747730;genbank:GeneID:5247195 Probab=100.00 E-value=4.8e-60 Score=345.79 Aligned_cols=323 Identities=17% Similarity=0.222 Sum_probs=239.5 Q ss_pred CCCCCCC----CCCcchhhccccccceeEEEcCC----ceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhh Q lcl|Aclame:pro 1 MSKKKGK----TPQPAAKTMTASAPKMEAFTFGE----PVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHH 72 (344) Q Consensus 1 m~~~~~~----~~~~~~~~~~~~~~~~~~f~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~ 72 (344) |+-..+. ++...+...+. +....+ +|. +...+...+++.|+....+. +-+.|+.++ +.+..+ T Consensus 1 MG~~~~~~~~~~~~~~~~~~~~--~~~~~~-~g~~~~~~~~al~~~~V~~~v~~Ia~~-iA~lp~~~~------~~~~~~ 70 (411) T protein:vir:81 1 MGWWSRLTRFFRPRNETVDMTN--PLLLQW-LGVDPDTPRNQLSEATYFACLKILSES-LGKLPLKMY------QKTERG 70 (411) T ss_pred CchHHHHHhhccCcccccccch--HHHHHH-hcCcccChhhhhccHHHHHHHHHHHHh-HhhCceeEE------EecCCc Confidence 5532211 00111111111 000000 111 12233344555565554442 334454432 111111 Q ss_pred hhhhhhcchhhH--HhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc-------- Q lcl|Aclame:pro 73 SSPIYVKRNILA--STFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED-------- 141 (344) Q Consensus 73 ~~~i~~k~n~~~--~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~-------- 141 (344) . ...+...+. ....|||++++. ||+.++.+++++||||++++|+ .|++.+|+|++|..|++..+.. T Consensus 71 ~--~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~-~g~~~~l~~l~~~~v~~~~~~~~~~~~~~~ 147 (411) T protein:vir:81 71 I--VKSDREELYNLLKLRPNPYMTSSVFWSTVEMNRNHYGNAYVWCQYS-GPQLQALWILPSQYVTIVVDDRGLLGEKNA 147 (411) T ss_pred e--eeecccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEec-CCceEEEEEECCceEEEEEcCcccccccce Confidence 1 111111222 235799999875 5677888999999999999999 5999999999999999876543 Q ss_pred eeEEE--cCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHH Q lcl|Aclame:pro 142 VYWWV--PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRN 219 (344) Q Consensus 142 ~~~~~--~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e 219 (344) .+|.+ ..+|..+.|+++||||+|.+.+.++++|+||+..+..++.++.++++|..++|+||++|+|||+++ +.++++ T Consensus 148 ~~~~~~~~~~g~~~~~~~~eiih~k~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~-~~l~~e 226 (411) T protein:vir:81 148 IWYRYNDPYDGKMYVFRNDEILHFKTSVTFDGITGLSVRDVLKHTVDGALESQKFMNNLYKTGLTGKAVLEYT-GDLNQE 226 (411) T ss_pred EEEEEEecCCceEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeC-CCCCHH Confidence 23333 346788899999999999776778999999999999999999999999999999999999999876 578999 Q ss_pred HHHHHHHHHHH-hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhcccccccccc Q lcl|Aclame:pro 220 DIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSL 298 (344) Q Consensus 220 ~~~~l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~ 298 (344) ++++++++|++ +.|.+|+++++++ ++|++|+|++.+++|+||+|++++++++||++|||||++||+.. .+++ T Consensus 227 ~~~~~~~~~~~~~~g~~n~g~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~--~~t~ 299 (411) T protein:vir:81 227 ARDRLVKGFEQFANGSKNAGKIIPV-----PLGMKLVPLDIKLTDSQFFELKKYTALQIAAAFGIKPNQINDYE--KSSY 299 (411) T ss_pred HHHHHHHHHHHHhcCccccCCceec-----CCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC--CCCc Confidence 99999999976 4677899999998 57899999999999999999999999999999999999999864 4689 Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 299 GDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 299 ~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +|+|++.+.|+++||.|++.+||+ +|++|..+..+-.+++++||-. T Consensus 300 ~n~e~~~~~f~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~~fd~~ 346 (411) T protein:vir:81 300 ASAEAQNLAFYVDTLLYVLKQYEEEITYKILSNDLISQGHYFKFNVN 346 (411) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhcCCCcEEEeech Confidence 999999999999999999999986 9999876544445677777655 No 44 >protein:vir:105064 Length: 421 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006584;genbank:gi:46402090;genbank:GeneID:2777930 Probab=100.00 E-value=7.5e-60 Score=344.74 Aligned_cols=325 Identities=13% Similarity=0.094 Sum_probs=238.4 Q ss_pred CCCCCCCCCCcchh---hccccc-ccee-EE-EcC---CceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAK---TMTASA-PKME-AF-TFG---EPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVH 71 (344) Q Consensus 1 m~~~~~~~~~~~~~---~~~~~~-~~~~-~f-~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ 71 (344) |-..+.-+....+. .....- .... .. ..| .++.++...+++.|+.+..+. +-+.|+.++ +.+.. T Consensus 1 m~~~~~~~~~~~~~s~~~~w~~~~~~~~~~~~~~g~~vt~~~al~~~~v~~~i~~Ia~~-iA~lp~~~~------~~~~~ 73 (421) T protein:vir:10 1 MFIPQMFEGKKRSVSGGGFWEAMLGGVRSSHSKAGVMITPETALALSAVRACVTLLAES-VAQLPVELY------RRDKN 73 (421) T ss_pred CCCcchhcccccccCcchhhHHHhhhhccCcccCCceechHHhhccHHHHHHHHHHHHh-hccCceEEE------EEcCC Confidence 44333222111111 110000 0000 00 001 112234455666666655543 334454332 11111 Q ss_pred hhhhhhhcch--hhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccC--ceeEEE Q lcl|Aclame:pro 72 HSSPIYVKRN--ILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEE--DVYWWV 146 (344) Q Consensus 72 ~~~~i~~k~n--~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~--~~~~~~ 146 (344) ... -..+-. ..+...+|||+++.. ||+.++.+++++||||++++|+..|+|++|+|++|..|++..+. ..||++ T Consensus 74 g~~-~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~v~~~~~g~~~y~~ 152 (421) T protein:vir:10 74 GGR-QRATDHPIYDLIHSQPNKKDTSFEYFEQQQGLLGLEGNCYSIIDRDGKGYPKELIPINPKKVIVLKGPDGMPYYEI 152 (421) T ss_pred Cce-eecccchHHHHHhhcccCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEecCceEEEEECCCceEEEEE Confidence 000 001111 122345799999874 67788899999999999999999999999999999999886554 356666 Q ss_pred cCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecC---CCCCHHHHHH Q lcl|Aclame:pro 147 PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTD---AVQDRNDIEM 223 (344) Q Consensus 147 ~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~---~~~~~e~~~~ 223 (344) ...|. .++++||||++.++ .++++|+||+..+..++.++.++++|+.++|+||++|+|||+++. +.+++|++++ T Consensus 153 ~~~g~--~~~~~eiih~~~~~-~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~e~~~~ 229 (421) T protein:vir:10 153 PEIGE--TLPMRMMHHVKVFS-LDGYIGSSPIQTNADVLGLNLAVEEHASAVFRRGATMSGVIERPKEAPAIKSQEKIDQ 229 (421) T ss_pred cCCCc--EEchhhEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCccCccCCHHHHHH Confidence 66664 58899999999876 578999999999999999999999999999999999999999764 2458999999 Q ss_pred HHHHHHH-hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHH Q lcl|Aclame:pro 224 LRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIE 302 (344) Q Consensus 224 l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e 302 (344) +++.|++ +.|.+|+++++|+ +.|++|++++.+++|+||+|.+++++++||++|||||++||+. +.++++|+| T Consensus 230 ~~~~~~~~~~g~~n~~~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~--~~~t~sn~e 302 (421) T protein:vir:10 230 LLAKWTDRYSGINNMFSVALL-----QEGMSYKQMSQDNEKAQLLQSRQWGVEEVCRLYKIPPHMVQML--AKATNNNIE 302 (421) T ss_pred HHHHHHHHhcCccccCcceec-----CCCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCC--cCCccccHH Confidence 9999976 5677899999998 5789999999999999999999999999999999999999985 456899999 Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 303 KVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 303 ~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) ++.+.|+++||.|++..||+ ||.+|..+..+ .++.++||-- T Consensus 303 ~~~~~f~~~tl~P~~~~ie~~ln~kL~~~~~~-~~~~v~fd~~ 344 (421) T protein:vir:10 303 HQGLQFVMYTLLAWLKRHEGALQRDLLLPSER-RDLYIEFNVS 344 (421) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCcccc-CCeEEEEech Confidence 99999999999999999985 99999776544 3566666644 No 45 >protein:vir:79984 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430000;genbank:gi:156604055;genbank:GeneID:5525444 Probab=100.00 E-value=2.8e-59 Score=341.62 Aligned_cols=318 Identities=14% Similarity=0.165 Sum_probs=229.6 Q ss_pred CCCCCCCCCCcch---hhccccccceeEEEcCC-----ceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAA---KTMTASAPKMEAFTFGE-----PVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHH 72 (344) Q Consensus 1 m~~~~~~~~~~~~---~~~~~~~~~~~~f~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~ 72 (344) |..-++...+..+ ...+........++-.. ++.+|...+++.|+....+. .-+.|+.++. .. T Consensus 26 ~~lf~~~e~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~~cv~~Ia~~-iA~lp~~~~~------~~--- 95 (441) T protein:vir:79 26 VGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASD-LARMPIRVTV------NG--- 95 (441) T ss_pred cccccccccccccCCCcchHHHHHHhcccCcccccccchhhhhccHHHHHHHHHHHHh-hccCceeeec------Cc--- Confidence 2221111111100 00000000001111111 12345556677777665543 4445554321 00 Q ss_pred hhhhhhcch-hhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc--eeEEEc- Q lcl|Aclame:pro 73 SSPIYVKRN-ILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--VYWWVP- 147 (344) Q Consensus 73 ~~~i~~k~n-~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~--~~~~~~- 147 (344) . +..++. ..+....|||++++. ||+.++.+++++||||++++|+..|+|++|+|++|..|++..+.+ .+|.+. T Consensus 96 -~-~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~g~~~~~~~~ 173 (441) T protein:vir:79 96 -Q-INYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQR 173 (441) T ss_pred -c-ccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEEEEEE Confidence 0 011111 112335799999875 567888999999999999999999999999999999998876543 333332 Q ss_pred ----CCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHH Q lcl|Aclame:pro 148 ----SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEM 223 (344) Q Consensus 148 ----~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~ 223 (344) ..+....++++||||+|.++ .++++|+||+.++.+++.++.++++|..++|+||++|+|||++++...+++++++ T Consensus 174 ~~~~~~~~~~~~~~~dvih~k~~~-~dg~~G~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~e~~e~ 252 (441) T protein:vir:79 174 IDSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDR 252 (441) T ss_pred eccCCceeEEEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCCCCCCHHHHHH Confidence 23456789999999999775 5789999999999999999999999999999999999999999877678999999 Q ss_pred HHHHHHH-hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHH Q lcl|Aclame:pro 224 LRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIE 302 (344) Q Consensus 224 l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e 302 (344) +|+.|++ +.|.+|+++++|+ ++|++|+|++.+++|+||+|++++++++||++|||||++||+.. .+ .+.+ T Consensus 253 ~r~~~~~~~~G~~nag~~~vl-----~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~---~~-~s~~ 323 (441) T protein:vir:79 253 AREEFHKSFSGTKQAGKVVVL-----DESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIET---AN-MSIT 323 (441) T ss_pred HHHHHHHHhcCccccCcceec-----CCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCC---CC-ccHH Confidence 9999966 5678999999998 57899999999999999999999999999999999999999632 22 3456 Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 303 KVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 303 ~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) ++...| .+||+|++.+||+ ||.+|.++ +..++++||-. T Consensus 324 q~~~~~-~~tl~P~~~~ie~eln~kl~~~---~~~~~~~fd~~ 362 (441) T protein:vir:79 324 DANLDY-LSTLKPYITCVCAELNFKFNDE---YVNREFKFDTT 362 (441) T ss_pred HHHHHH-HHHHHHHHHHHHHHHhhhcccc---ccCceEEeech Confidence 666655 5699999999985 99999764 35567777655 No 46 >protein:vir:9408 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803386;genbank:gi:29028698;genbank:GeneID:1258164 Probab=100.00 E-value=2.8e-59 Score=341.62 Aligned_cols=318 Identities=14% Similarity=0.165 Sum_probs=229.6 Q ss_pred CCCCCCCCCCcch---hhccccccceeEEEcCC-----ceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAA---KTMTASAPKMEAFTFGE-----PVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHH 72 (344) Q Consensus 1 m~~~~~~~~~~~~---~~~~~~~~~~~~f~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~ 72 (344) |..-++...+..+ ...+........++-.. ++.+|...+++.|+....+. .-+.|+.++. .. T Consensus 26 ~~lf~~~e~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~~cv~~Ia~~-iA~lp~~~~~------~~--- 95 (441) T protein:vir:94 26 VGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASD-LARMPIRVTV------NG--- 95 (441) T ss_pred cccccccccccccCCCcchHHHHHHhcccCcccccccchhhhhccHHHHHHHHHHHHh-hccCceeeec------Cc--- Confidence 2221111111100 00000000001111111 12345556677777665543 4445554321 00 Q ss_pred hhhhhhcch-hhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc--eeEEEc- Q lcl|Aclame:pro 73 SSPIYVKRN-ILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--VYWWVP- 147 (344) Q Consensus 73 ~~~i~~k~n-~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~--~~~~~~- 147 (344) . +..++. ..+....|||++++. ||+.++.+++++||||++++|+..|+|++|+|++|..|++..+.+ .+|.+. T Consensus 96 -~-~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~g~~~~~~~~ 173 (441) T protein:vir:94 96 -Q-INYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQR 173 (441) T ss_pred -c-ccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEEEEEE Confidence 0 011111 112335799999875 567888999999999999999999999999999999998876543 333332 Q ss_pred ----CCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHH Q lcl|Aclame:pro 148 ----SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEM 223 (344) Q Consensus 148 ----~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~ 223 (344) ..+....++++||||+|.++ .++++|+||+.++.+++.++.++++|..++|+||++|+|||++++...+++++++ T Consensus 174 ~~~~~~~~~~~~~~~dvih~k~~~-~dg~~G~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~e~~e~ 252 (441) T protein:vir:94 174 IDSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDR 252 (441) T ss_pred eccCCceeEEEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCCCCCCHHHHHH Confidence 23456789999999999775 5789999999999999999999999999999999999999999877678999999 Q ss_pred HHHHHHH-hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHH Q lcl|Aclame:pro 224 LRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIE 302 (344) Q Consensus 224 l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e 302 (344) +|+.|++ +.|.+|+++++|+ ++|++|+|++.+++|+||+|++++++++||++|||||++||+.. .+ .+.+ T Consensus 253 ~r~~~~~~~~G~~nag~~~vl-----~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~---~~-~s~~ 323 (441) T protein:vir:94 253 AREEFHKSFSGTKQAGKVVVL-----DESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIET---AN-MSIT 323 (441) T ss_pred HHHHHHHHhcCccccCcceec-----CCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCC---CC-ccHH Confidence 9999966 5678999999998 57899999999999999999999999999999999999999632 22 3456 Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 303 KVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 303 ~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) ++...| .+||+|++.+||+ ||.+|.++ +..++++||-. T Consensus 324 q~~~~~-~~tl~P~~~~ie~eln~kl~~~---~~~~~~~fd~~ 362 (441) T protein:vir:94 324 DANLDY-LSTLKPYITCVCAELNFKFNDE---YVNREFKFDTT 362 (441) T ss_pred HHHHHH-HHHHHHHHHHHHHHHhhhcccc---ccCceEEeech Confidence 666655 5699999999985 99999764 35567777655 No 47 >protein:vir:98396 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918929;genbank:gi:119443691;genbank:GeneID:4594558 Probab=100.00 E-value=4.2e-59 Score=340.62 Aligned_cols=318 Identities=14% Similarity=0.171 Sum_probs=231.5 Q ss_pred CCCCCCCCCCcch---hhccccccceeEEEcCC-----ceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAA---KTMTASAPKMEAFTFGE-----PVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHH 72 (344) Q Consensus 1 m~~~~~~~~~~~~---~~~~~~~~~~~~f~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~ 72 (344) |..-++...+..+ ...+.....+..++-.. ++..|...+++.|+.+..+. .-+.|+.++. ... T Consensus 26 ~~~f~~~e~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~acv~~Ia~~-iA~lpl~~~~------~~~-- 96 (441) T protein:vir:98 26 VGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASD-LARMPIRVTV------NGQ-- 96 (441) T ss_pred cccccccccccccCCCcchHHHHHHhhcccccCccccchhhhhccHHHHHHHHHHHHh-hccCceEEec------CCc-- Confidence 2221111111100 00000000011111111 22345566777777666553 4455654432 100 Q ss_pred hhhhhhcch-hhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc--eeEEEc- Q lcl|Aclame:pro 73 SSPIYVKRN-ILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--VYWWVP- 147 (344) Q Consensus 73 ~~~i~~k~n-~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~--~~~~~~- 147 (344) ....+. ..+....|||+|++. ||+.++.+++++||||++++|+..|+|++|+|++|..|++..+.+ .+|++. T Consensus 97 ---~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~ 173 (441) T protein:vir:98 97 ---INYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKLDARGRLYYFHQR 173 (441) T ss_pred ---ccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCceeEEEECCCCcEEEEEEE Confidence 000111 122345899999875 567888999999999999999999999999999999998765543 344332 Q ss_pred ----CCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHH Q lcl|Aclame:pro 148 ----SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEM 223 (344) Q Consensus 148 ----~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~ 223 (344) ..+....|+++||||+|.++ .++++|+||+..+.+++.++.++++|+.++|+||++|+|||++++...+++++++ T Consensus 174 ~~~~~~~~~~~~~~~dviHir~~~-~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil~~~~~~~~~e~~~~ 252 (441) T protein:vir:98 174 IDSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDR 252 (441) T ss_pred eccCcceeeEEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHH Confidence 23456789999999999875 5789999999999999999999999999999999999999999876668899999 Q ss_pred HHHHHHH-hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHH Q lcl|Aclame:pro 224 LRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIE 302 (344) Q Consensus 224 l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e 302 (344) +++.|++ +.|.+|+++++|+ ++|++|+|++.+++|+||+|++++++++||++|||||++||+.. .+ .+.+ T Consensus 253 ~~~~~~~~~~G~~nag~~~vl-----~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~---~~-~s~~ 323 (441) T protein:vir:98 253 AREEFHKSFSGTKQAGKVVVL-----DESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIET---AN-MSIT 323 (441) T ss_pred HHHHHHHHhcCccccCcceec-----CCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCC---CC-ccHH Confidence 9999976 5677999999999 57899999999999999999999999999999999999999632 22 3567 Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 303 KVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 303 ~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) ++...|. +||+|++.+||+ ||.+|.++ +..++++||-- T Consensus 324 q~~~~y~-~tl~P~~~~ie~~ln~~L~~~---~~~~~~~fd~~ 362 (441) T protein:vir:98 324 DANLDYL-STLKPYITCVCAELNFKFNDE---YVNREFKFDTT 362 (441) T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhhcccc---ccCceEEEech Confidence 7777666 599999999985 99999765 34566777655 No 48 >protein:vir:102118 Length: 409 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699943;genbank:gi:110804051;genbank:GeneID:4206661 Probab=100.00 E-value=2.5e-59 Score=341.89 Aligned_cols=324 Identities=14% Similarity=0.197 Sum_probs=238.6 Q ss_pred CCCCCCCCCCcchhhccccccceeEEE------cCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFT------FGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSS 74 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~------~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~ 74 (344) |=-+|..++........... -...+. .-++...+...+++.|+....+. +-+.|+.++. ...- T Consensus 1 m~f~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~-ia~lp~~~~~------~~~~--- 69 (409) T protein:vir:10 1 MLFRKGFKNQSQEISIDDKK-ILEWLGINPSETYVNGKSCLKQATVFGCIRILSDN-ISKLPIKIYQ------KKDG--- 69 (409) T ss_pred CcccccccCcCCCCCCChHH-HHHHhcCCcCcceechhhhhccHHHHHHHHHHHHh-hhhCceEEEE------ecCC--- Confidence 54333322222111111000 000010 11122234445555555544432 3234443321 1000 Q ss_pred hhhhcchh--hHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc--------e- Q lcl|Aclame:pro 75 PIYVKRNI--LASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--------V- 142 (344) Q Consensus 75 ~i~~k~n~--~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~--------~- 142 (344) ....+... .+....|||++++. ||+.++.+++++||||++++|+..|++++|+|++|.+|++..+.. . T Consensus 70 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~V~v~~~~~~~~~~~~~~~ 149 (409) T protein:vir:10 70 IKRVPDHYLEYLLKLRPNPYMSSSDFWKCIEVQRNIYGNAYVALDFKKNGEIKGLYPLKSDGMKIFVDDTGLLNSENNVW 149 (409) T ss_pred eeeccCchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCCceEEEEcCCccccccceEE Confidence 00011111 12335799999875 567888999999999999999999999999999999998765432 1 Q ss_pred eEEEcCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHH Q lcl|Aclame:pro 143 YWWVPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIE 222 (344) Q Consensus 143 ~~~~~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~ 222 (344) |.+....|....|+++||||+|.+++ ++++|+||+.++.+++.++.++++++.++|+||++|++||+++ +.+++++.+ T Consensus 150 y~~~~~~g~~~~~~~~evih~r~~~~-d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~-~~l~~e~~~ 227 (409) T protein:vir:10 150 YLYTDDLGQRHKFMSDEILHFKGLTA-DGLAGLSVIELLNHLIENGKSSETYLNNFFKNGLQVKGLVQYA-GDLNPEAEE 227 (409) T ss_pred EEEEeCCceeEEeccccEEEecCcCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcC-CCCCHHHHH Confidence 33344567788999999999998875 6899999999999999999999999999999999999999976 568999999 Q ss_pred HHHHHHHH-hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccH Q lcl|Aclame:pro 223 MLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDI 301 (344) Q Consensus 223 ~l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~ 301 (344) ++++.|++ +.|.+|+++++|+ +.|++|+|++.+++|+||+|++++++++||++|||||.+||+. +.++++|+ T Consensus 228 ~~~~~~~~~~~g~~n~~~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~--~~~~~~~~ 300 (409) T protein:vir:10 228 VFKENFERMSSGLKNAHRIAML-----PIGYKFEPISQKLVDAQFLENSQLTIRQIASVFGVKMHQLNDL--DRATHSNI 300 (409) T ss_pred HHHHHHHHHhccccccCCceec-----CCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHcCCC--CCCccccH Confidence 99999976 5677899999998 5689999999999999999999999999999999999999975 44689999 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 302 EKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 302 e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +++.+.|+++||.|++..||+ ||++|..+..+-.+|+++||-- T Consensus 301 e~~~~~f~~~~l~P~~~~ie~~ln~kL~~~~~~~~~~~~~fd~~ 344 (409) T protein:vir:10 301 TEQNREFYIDTLQSILNMYELEINYKLFLISEIKNGFYSKFNVD 344 (409) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhccCCcEEEEech Confidence 999999999999999999986 9999876543345577777644 No 49 >protein:vir:95599 Length: 563 # NCBI annotation: ORF014 # Family: family:all:2446 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240900;genbank:gi:66394963;genbank:GeneID:5132540 Probab=100.00 E-value=8.8e-59 Score=338.86 Aligned_cols=317 Identities=15% Similarity=0.136 Sum_probs=235.8 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) -+|.+.++....++.... .++.+. +....-.+.+||.++..+.+.+..++.+.+||..+. T Consensus 46 ~~~~~~~~~~a~~~~~~~---------------~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~ 105 (563) T protein:vir:95 46 LTKSLYGQQQAYAEPFIE---------------MMDTNP-----EFRDKRSYMKNEHNLHDVLKKFGNNPILNAIILTRS 105 (563) T ss_pred HHhhhccCCCcchhhhHh---------------hhcccc-----cccccccCCCCcccHHHHHHHhhcchHHHHHHHHHH Confidence 122111111111110000 000000 000111245566677677777777777777665555 Q ss_pred hhhHH-----------------------------------------hh--hcCCC--CCHHHHHHHHHHHHhcCCceEEE Q lcl|Aclame:pro 81 NILAS-----------------------------------------TF--IPHPW--LSQQDFSRFVLDFLVFGNAFLEK 115 (344) Q Consensus 81 n~~~~-----------------------------------------~~--~pnp~--~~~~~~~~~~~d~ll~Gnay~~~ 115 (344) +.++. .. .++|+ +.++||+.++.+++++||+|+++ T Consensus 106 ~~vA~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~ 185 (563) T protein:vir:95 106 NQVAMYCQPARYSEKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEK 185 (563) T ss_pred HHHHHHhhhhhhhcccccceeEEeecCCCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEE Confidence 43331 01 13333 33578889999999999999987 Q ss_pred e--eCCCCceEEEEEeCcceeeccccCc--------eeEEEcCCceEEEEecccEEEe-cCCC--CCCCcccccchhhhH Q lcl|Aclame:pro 116 R--YSTTGKVIRLETSPAKYTRRGVEED--------VYWWVPSFNEPTAFAPGSVFHL-LEPD--INQELYGLPEYLSAL 182 (344) Q Consensus 116 ~--r~~~G~~~~L~pl~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~eIih~-~~~~--~~~~~~G~sp~~~~~ 182 (344) + |+..|+|++|+|++|.+|++..+.+ .|+++..++....|+++||||+ +.+. +..++||+||+.+++ T Consensus 186 ~~~rd~~G~~~~L~pl~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~~evI~~~~~~~~d~~~~~~G~Spi~~a~ 265 (563) T protein:vir:95 186 VFNKNNKTKLEKFIAVDPSTIFYATDKKGKIIKGGKRFVQVVDKRVVASFTSRELAMGIRNPRTELSSSGYGLSEVEIAM 265 (563) T ss_pred EEEecCCCceEEEEEeCCceeEEEECCCCceeccceeEEEEeCCceeEEecCcceEEEeccCCCCcccCcccchHHHHHH Confidence 6 7888999999999999999865544 2455666777788999998755 4543 344789999999999 Q ss_pred HHHHHHHHHHHHHHHHHHccCCCceEEEecC-CCCCHHHHHHHHHHHHH-hhcccccccc-cccCCCCccccceeeeccC Q lcl|Aclame:pro 183 NSAWLNESATLFRRKYYENGAHAGYIMYVTD-AVQDRNDIEMLRENMVK-SKGRNNFKNL-FLYAPQGKADGIKIIPLSE 259 (344) Q Consensus 183 ~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~-~~~~~e~~~~l~~~~~~-~~g~~n~~~~-~vl~~~~~~~g~~~~pl~~ 259 (344) .+|.++.++++|+.++|+||++|+|||.+++ ..+++++++++++.|++ +.|.+|++++ +|+ ++|++|+|+++ T Consensus 266 ~~i~~~~~~~~~~~~~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl-----~~G~~~~~l~~ 340 (563) T protein:vir:95 266 KEFIAYNNTESFNDRFFSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSGINGSWQIPVVM-----ADDIKFVNMTP 340 (563) T ss_pred HHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceEEc-----CCCceEEeccC Confidence 9999999999999999999999999999875 45899999999999976 5678999986 666 56899999999 Q ss_pred ChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccc---------cccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCc Q lcl|Aclame:pro 260 VATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENV---------GSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQ 329 (344) Q Consensus 260 ~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~---------~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~ 329 (344) +++|+||+|++++++++||++|||||++||+....+ .+++|++++.+.|++.||.||+..||+ ||.+|.. T Consensus 341 ~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~ 420 (563) T protein:vir:95 341 TANDMQFEKWLNYLINIISALYGIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRFIEDLVNRHIIS 420 (563) T ss_pred ChhHHHHHHHHHHHHHHHHHHhCCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhch Confidence 999999999999999999999999999999865432 245789999999999999999999995 9999987 Q ss_pred cceeccccccccCCC Q lcl|Aclame:pro 330 EVIRFKNYSLDTDNG 344 (344) Q Consensus 330 ~~irf~~y~l~~d~g 344 (344) +. ...|.++|+.+ T Consensus 421 ~~--~~~~~~~f~r~ 433 (563) T protein:vir:95 421 EY--GDKYTFQFVGG 433 (563) T ss_pred hc--ccccEEEeccC Confidence 64 34577888888 No 50 >protein:vir:99312 Length: 563 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024471;genbank:gi:48696430;genbank:GeneID:2948040 Probab=100.00 E-value=8.8e-59 Score=338.86 Aligned_cols=317 Identities=15% Similarity=0.136 Sum_probs=235.8 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) -+|.+.++....++.... .++.+. +....-.+.+||.++..+.+.+..++.+.+||..+. T Consensus 46 ~~~~~~~~~~a~~~~~~~---------------~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~ 105 (563) T protein:vir:99 46 LTKSLYGQQQAYAEPFIE---------------MMDTNP-----EFRDKRSYMKNEHNLHDVLKKFGNNPILNAIILTRS 105 (563) T ss_pred HHhhhccCCCcchhhhHh---------------hhcccc-----cccccccCCCCcccHHHHHHHhhcchHHHHHHHHHH Confidence 122111111111110000 000000 000111245566677677777777777777665555 Q ss_pred hhhHH-----------------------------------------hh--hcCCC--CCHHHHHHHHHHHHhcCCceEEE Q lcl|Aclame:pro 81 NILAS-----------------------------------------TF--IPHPW--LSQQDFSRFVLDFLVFGNAFLEK 115 (344) Q Consensus 81 n~~~~-----------------------------------------~~--~pnp~--~~~~~~~~~~~d~ll~Gnay~~~ 115 (344) +.++. .. .++|+ +.++||+.++.+++++||+|+++ T Consensus 106 ~~vA~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~ 185 (563) T protein:vir:99 106 NQVAMYCQPARYSEKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEK 185 (563) T ss_pred HHHHHHhhhhhhhcccccceeEEeecCCCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEE Confidence 43331 01 13333 33578889999999999999987 Q ss_pred e--eCCCCceEEEEEeCcceeeccccCc--------eeEEEcCCceEEEEecccEEEe-cCCC--CCCCcccccchhhhH Q lcl|Aclame:pro 116 R--YSTTGKVIRLETSPAKYTRRGVEED--------VYWWVPSFNEPTAFAPGSVFHL-LEPD--INQELYGLPEYLSAL 182 (344) Q Consensus 116 ~--r~~~G~~~~L~pl~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~eIih~-~~~~--~~~~~~G~sp~~~~~ 182 (344) + |+..|+|++|+|++|.+|++..+.+ .|+++..++....|+++||||+ +.+. +..++||+||+.+++ T Consensus 186 ~~~rd~~G~~~~L~pl~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~~evI~~~~~~~~d~~~~~~G~Spi~~a~ 265 (563) T protein:vir:99 186 VFNKNNKTKLEKFIAVDPSTIFYATDKKGKIIKGGKRFVQVVDKRVVASFTSRELAMGIRNPRTELSSSGYGLSEVEIAM 265 (563) T ss_pred EEEecCCCceEEEEEeCCceeEEEECCCCceeccceeEEEEeCCceeEEecCcceEEEeccCCCCcccCcccchHHHHHH Confidence 6 7888999999999999999865544 2455666777788999998755 4543 344789999999999 Q ss_pred HHHHHHHHHHHHHHHHHHccCCCceEEEecC-CCCCHHHHHHHHHHHHH-hhcccccccc-cccCCCCccccceeeeccC Q lcl|Aclame:pro 183 NSAWLNESATLFRRKYYENGAHAGYIMYVTD-AVQDRNDIEMLRENMVK-SKGRNNFKNL-FLYAPQGKADGIKIIPLSE 259 (344) Q Consensus 183 ~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~-~~~~~e~~~~l~~~~~~-~~g~~n~~~~-~vl~~~~~~~g~~~~pl~~ 259 (344) .+|.++.++++|+.++|+||++|+|||.+++ ..+++++++++++.|++ +.|.+|++++ +|+ ++|++|+|+++ T Consensus 266 ~~i~~~~~~~~~~~~~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl-----~~G~~~~~l~~ 340 (563) T protein:vir:99 266 KEFIAYNNTESFNDRFFSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSGINGSWQIPVVM-----ADDIKFVNMTP 340 (563) T ss_pred HHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceEEc-----CCCceEEeccC Confidence 9999999999999999999999999999875 45899999999999976 5678999986 666 56899999999 Q ss_pred ChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccc---------cccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCc Q lcl|Aclame:pro 260 VATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENV---------GSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQ 329 (344) Q Consensus 260 ~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~---------~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~ 329 (344) +++|+||+|++++++++||++|||||++||+....+ .+++|++++.+.|++.||.||+..||+ ||.+|.. T Consensus 341 ~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~ 420 (563) T protein:vir:99 341 TANDMQFEKWLNYLINIISALYGIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRFIEDLVNRHIIS 420 (563) T ss_pred ChhHHHHHHHHHHHHHHHHHHhCCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhch Confidence 999999999999999999999999999999865432 245789999999999999999999995 9999987 Q ss_pred cceeccccccccCCC Q lcl|Aclame:pro 330 EVIRFKNYSLDTDNG 344 (344) Q Consensus 330 ~~irf~~y~l~~d~g 344 (344) +. ...|.++|+.+ T Consensus 421 ~~--~~~~~~~f~r~ 433 (563) T protein:vir:99 421 EY--GDKYTFQFVGG 433 (563) T ss_pred hc--ccccEEEeccC Confidence 64 34577888888 No 51 >protein:vir:94666 Length: 723 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579205;genbank:gi:93007441;genbank:GeneID:5076785 Probab=100.00 E-value=5.2e-59 Score=340.12 Aligned_cols=305 Identities=13% Similarity=0.091 Sum_probs=224.8 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceec-------------cCcchhhhhhhhhccchhhhccccHHHHHHHHh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPV-------------LDRRDILDYVECISNGRWYEPPVSFTGLAKSLR 67 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~-------------~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~ 67 (344) ||.-- ..+|+++.+ +....++.|+....+. +-+.|+.++ + T Consensus 1 ~~~~~--------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~V~acV~~Ia~~-iA~lpl~l~------~ 53 (723) T protein:vir:94 1 MTTFP--------------------SGAGGWNAWSADSVFGNGAKGWSNSAVAYRCISMLANN-AASVDLVVR------G 53 (723) T ss_pred Ccccc--------------------cCCCccccccccccccccHHHHhhhHHHHHHHHHHHHh-hccceeEEE------c Confidence 22111 111222221 2222333444333221 223333221 0 Q ss_pred hhhhhhhhhhhcchh-hHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCC---CCceEEEEEeCcceeeccccCc- Q lcl|Aclame:pro 68 AAVHHSSPIYVKRNI-LASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYST---TGKVIRLETSPAKYTRRGVEED- 141 (344) Q Consensus 68 ~~~~~~~~i~~k~n~-~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~---~G~~~~L~pl~~~~~~~~~~~~- 141 (344) .+ .-+..++.. -+...+|||+++.. ||+.++.++++.||+|++++|+. .|.|++|+|+++..+.+....+ T Consensus 54 ~~----~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~r~~~g~p~~l~~l~~~~~~v~~~~~~ 129 (723) T protein:vir:94 54 PD----GELDELHPLSQLWNVMPNRAMPAQVLKALSMTRLQLDGQCHLWLNYNGRTPAGVPDEIWYVYDRVTTIVATRAA 129 (723) T ss_pred CC----CccchhhHHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCccccceeEEEEecCcceEEeecCCC Confidence 00 001111111 12234799999875 56777889999999999999764 5899999999997665533221 Q ss_pred --------eeEE-EcCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEec Q lcl|Aclame:pro 142 --------VYWW-VPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVT 212 (344) Q Consensus 142 --------~~~~-~~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~ 212 (344) ..|. ...+|....++++||||+|.+++.+++||+||+..++++|.++.++++|+.++|+||++|+|||+++ T Consensus 130 ~~~~~~~~~~y~~~~~~G~~~~~~~~dIiHir~~~~~dg~~G~Spi~~a~~~i~~~~aa~~~~~~~f~NG~~p~giL~~~ 209 (723) T protein:vir:94 130 DAVPQAQIIGYVIERTDGVRVPVLADEMLWLRFSDPYDPLAVMAPWKAARAAVDADFYAATWQRQSFKNGARPGGVVNLG 209 (723) T ss_pred ccceeeeeeEEEEEecCceeEEecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcC Confidence 1122 2356778899999999999999899999999999999999999999999999999999999999864 Q ss_pred CCCCCHHHHHHHHHHHHH-hhcccccccccccCCCC-----ccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChH Q lcl|Aclame:pro 213 DAVQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQG-----KADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQ 286 (344) Q Consensus 213 ~~~~~~e~~~~l~~~~~~-~~g~~n~~~~~vl~~~~-----~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~ 286 (344) .+++++.++++++|++ +.|..|+|+++|+.+++ .++|++|+|++++++|+||+|++++++++||++|||||+ T Consensus 210 --~l~~e~~~~~~~~~~~~~~G~~Nagk~~vL~g~~~~~~vl~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~ 287 (723) T protein:vir:94 210 --DMDEQTFTKTVAAFRSQVEGVQNAGRHLLIAGQGSDGGAAGKGATFTSLSMSPAEMDYINSRMHSAEEVMLAFGIRKD 287 (723) T ss_pred --CCCHHHHHHHHHHHHHHhhchhhcCcceeecccccccccccCCceEEEccCCHHHHHHHHHHHHhHHHHHHHhCCChh Confidence 4899999999999975 57889999999996533 356999999999999999999999999999999999999 Q ss_pred HhccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 287 LMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 287 llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +||. .++++|++++.+.|+++||.|++++||+ ||.+|.++. .. .++++||.- T Consensus 288 ~i~~----~st~sN~e~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~-g~-~~~~~f~~~ 340 (723) T protein:vir:94 288 ALLG----GSTYENQAEAKAAVWTETLIPQMEVMASITDLQLLPDI-GW-TVEWDFNSV 340 (723) T ss_pred HcCC----CCCcccHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccc-cC-ceEEeecch Confidence 9963 4678999999999999999999999996 999997653 11 245566542 No 52 >protein:vir:1082 Length: 359 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076736;genbank:gi:13095846;genbank:GeneID:920394 Probab=100.00 E-value=4e-59 Score=340.73 Aligned_cols=315 Identities=14% Similarity=0.142 Sum_probs=235.4 Q ss_pred CCCCC--CCCCCcchhhcccc---ccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhh Q lcl|Aclame:pro 1 MSKKK--GKTPQPAAKTMTAS---APKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSP 75 (344) Q Consensus 1 m~~~~--~~~~~~~~~~~~~~---~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~ 75 (344) |+-.. +++......+-... ......-..-++..++...+++.|+....+. +-+.|+ T Consensus 1 M~~~~~f~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~av~~cv~~ia~~-ia~~p~------------------ 61 (359) T protein:vir:10 1 MSILNPFERRSSITPNNYYPFMVQNGSIVPNSLVDATEALKNSDLYAVTSLISSD-IAGTRF------------------ 61 (359) T ss_pred CcccchhhccccCCCCcchhhhhccccccCCcccCHHHhhcchHHHHHHHHHHHh-hhcCcc------------------ Confidence 88753 22222221111000 0000000011122233334444444333221 112221 Q ss_pred hhhcchhhHHhhhcCCCCCH-HHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCce-eEEEc--CCce Q lcl|Aclame:pro 76 IYVKRNILASTFIPHPWLSQ-QDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV-YWWVP--SFNE 151 (344) Q Consensus 76 i~~k~n~~~~~~~pnp~~~~-~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~-~~~~~--~~~~ 151 (344) ...+.......+|||+|+. +||+.++.+++++||||++++|+..|+|.+|+|+++..|++..+.+. +|.+. .++. T Consensus 62 -~~~~~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~g~~~~l~~l~~~~v~i~~~~~~~~y~~~~~~~~~ 140 (359) T protein:vir:10 62 -IGNQVFTSVLNNPSHLTNAFSFWQTAILNLLLNGNVFLAILKGDNSLMKELRLIPSNAITIDLTDDTLTYEVNQFDDYP 140 (359) T ss_pred -ccchHHHHHhhcccccCCHHHHHHHHHHhccccCceEEEEEECCCCeEEEEEEeCCceEEEEEcCCeEEEEEEecCCce Confidence 1111223344579999987 45678888999999999999999999999999999999998665553 45443 4577 Q ss_pred EEEEecccEEEecCCC----CCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHH Q lcl|Aclame:pro 152 PTAFAPGSVFHLLEPD----INQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLREN 227 (344) Q Consensus 152 ~~~~~~~eIih~~~~~----~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~ 227 (344) ...|+++||||+|.++ +.++++|+||+.++.+++.++.++++|..++|+||++|+|||+++.+.++++++++++++ T Consensus 141 ~~~~~~~evih~~~~~~~~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l~~e~~~~~~~~ 220 (359) T protein:vir:10 141 SAKYNASEMIHVKIMAYGVDTLHNLVGHSPLESLTSEIGQQKEANRLSLSTLKGALNPTSVVKVPQGTLSSEAKDSIRKE 220 (359) T ss_pred EEEEcccceEEeccCCCCCCccCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHH Confidence 8899999999999765 347899999999999999999999999999999999999999988778999999999999 Q ss_pred HHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHH Q lcl|Aclame:pro 228 MVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKV 307 (344) Q Consensus 228 ~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~ 307 (344) |++.+|++|+|+++|+ ++|++|+|++++++|+||+|++++++++||++|||||++||...+..+++++++++... T Consensus 221 ~~~~~~~~n~g~~~vl-----~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~e~~~~~ 295 (359) T protein:vir:10 221 FEKANGGNNSGRVMVL-----DQSADFSTVSINADVANYLNSMNWGRTQIAKAFGVSDSYLNGTGDQQSSLDQIKDLYVN 295 (359) T ss_pred HHHHhCccccCCceec-----CCCcceeeecCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCcccccHHHHHHHHHH Confidence 9988899999999999 56899999999999999999999999999999999999999877777889999999999 Q ss_pred HHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 308 FVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 308 f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) |+..+|.|+.+.|++ ++..+..+ ..+.+++|.. T Consensus 296 ~l~~~l~p~~~~l~~~l~~~~~~~----~~~~~~~d~~ 329 (359) T protein:vir:10 296 ALNRFIEPLISELRIKCDSSIGVD----MSPITDYSNS 329 (359) T ss_pred HHHHHHHHHHHHHHHHhhhhhccc----chhhhhcCHH Confidence 999999999888875 66655332 1344555555 No 53 >protein:vir:81072 Length: 432 # NCBI annotation: p07 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285677;genbank:gi:148727185;genbank:GeneID:5247117 Probab=100.00 E-value=6.5e-59 Score=339.59 Aligned_cols=323 Identities=12% Similarity=0.105 Sum_probs=231.2 Q ss_pred CCCCCCCCCC---cchhhccc--cccce--eEEEcCC----------ceeccCcchhhhhhhhhccchhhhccccHHHHH Q lcl|Aclame:pro 1 MSKKKGKTPQ---PAAKTMTA--SAPKM--EAFTFGE----------PVPVLDRRDILDYVECISNGRWYEPPVSFTGLA 63 (344) Q Consensus 1 m~~~~~~~~~---~~~~~~~~--~~~~~--~~f~~~~----------p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 63 (344) |..-.+.+.. +++..... ....+ ....++. ++..+...+++.|+....+. +-+.|+.++ T Consensus 7 mg~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~V~~~i~~Ia~~-ia~lp~~~y--- 82 (432) T protein:vir:81 7 LGLFGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQA-IAAMPLTMY--- 82 (432) T ss_pred cchhhhhhhhcccccccccccccccccCccchhhhcccccccCcccchHhhhccHHHHHHHHHHHHh-hhhCceeeE--- Confidence 3333321110 00000000 00000 0011111 11223334444454443332 223333321 Q ss_pred HHHhhhhhhhhhhhhc-ch-hhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccC Q lcl|Aclame:pro 64 KSLRAAVHHSSPIYVK-RN-ILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEE 140 (344) Q Consensus 64 ~~~~~~~~~~~~i~~k-~n-~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~ 140 (344) +.... .....+ +. .-+....|||+++.. ||+.++.+++++||||++++|+ .|++++|+|+++..|++..+. T Consensus 83 ---~~~~~--g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnayv~i~~~-~g~~~~L~~l~~~~v~v~~~~ 156 (432) T protein:vir:81 83 ---MRTPD--GRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT-DGRIESLQYLANDRLTITTDP 156 (432) T ss_pred ---EecCC--cceecccchHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCCceEEEECC Confidence 11100 000101 11 112345799999875 5678888999999999999997 499999999999999887654 Q ss_pred c--eeEE-EcCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCC Q lcl|Aclame:pro 141 D--VYWW-VPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQD 217 (344) Q Consensus 141 ~--~~~~-~~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~ 217 (344) + .+|. ...+|..+.++++||||+|.++ .+++||+||+..+..+|.++.++++|..++|+||++|++||+++ +.++ T Consensus 157 ~g~~~y~~~~~~g~~~~~~~~~iih~r~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~-~~l~ 234 (432) T protein:vir:81 157 KGNTAYRYRRTDGQMIDIPKQQIWKIMGYS-LDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQID-RFLT 234 (432) T ss_pred CCcEEEEEEecCceEEEEccccEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecC-CCCC Confidence 3 3444 4567888899999999999875 56899999999999999999999999999999999999999976 5789 Q ss_pred HHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhcccccc-cc Q lcl|Aclame:pro 218 RNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPEN-VG 296 (344) Q Consensus 218 ~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~-~~ 296 (344) +++++++++.|+ |..|+++++++ +.|++|+|++++++|+||+|++++++++||++|||||++||+...+ .+ T Consensus 235 ~e~~~~~~~~~~---~~~nag~~~vl-----~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~ 306 (432) T protein:vir:81 235 DDQYDSFAKKVS---GSVEAGRAPLL-----EGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTS 306 (432) T ss_pred HHHHHHHHHHHh---hhhcCCCceec-----CCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCcccc Confidence 999999998874 56788999998 5689999999999999999999999999999999999999987643 34 Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 297 SLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 297 ~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +++|+||+.+.|+++||.||+.+||+ +|.+|..+..+ ..|+++||-- T Consensus 307 ~~sn~eq~~~~f~~~tl~P~~~~ie~~l~~kLl~~~~~-~~~~~~fd~~ 354 (432) T protein:vir:81 307 WGSGIESQQLGFLTMTLSPWLRRIEQSIALNLLSPAER-RRYFADFDTS 354 (432) T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc-CceEEEeech Confidence 56899999999999999999999986 99999776443 4577777653 No 54 >protein:vir:97060 Length: 432 # NCBI annotation: putative head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453563;genbank:gi:84662598;genbank:GeneID:5142475 Probab=100.00 E-value=4.7e-59 Score=340.34 Aligned_cols=323 Identities=12% Similarity=0.117 Sum_probs=229.9 Q ss_pred CCCCCCCCCCcchhhcc---cccc-ceeEEEcCC----------ceeccCcchhhhhhhhhccchhhhccccHHHHHHHH Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMT---ASAP-KMEAFTFGE----------PVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSL 66 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~---~~~~-~~~~f~~~~----------p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 66 (344) |++.|.--..+.+.+.. +..+ ....-.++. ++.++....++.|+....+. +-+.|+.++ T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~a~~~~aV~~~v~~Ia~~-ia~lp~~~y------ 82 (432) T protein:vir:97 10 LGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQA-VAAMPLMMY------ 82 (432) T ss_pred hhhhHhhcCCccccccccccccccCchhhhhhcccccccCcccchHhhhcchHHHHHHHHHHHh-hccCceEEE------ Confidence 33322221111111000 0000 000000111 11122333344444433332 223333221 Q ss_pred hhhhhhhhhhhhcchh--hHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccC--c Q lcl|Aclame:pro 67 RAAVHHSSPIYVKRNI--LASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEE--D 141 (344) Q Consensus 67 ~~~~~~~~~i~~k~n~--~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~--~ 141 (344) +.... .....+... .+...+|||++++. ||+.++.+++++||||++++|+ .|++.+|+|++|..|++..+. . T Consensus 83 ~~~~~--g~~~~~~~pl~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~-~g~~~~L~~l~p~~v~v~~~~~g~ 159 (432) T protein:vir:97 83 MRTPD--GRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT-DGRIESLQYLANDRLTITTDTKGN 159 (432) T ss_pred EecCC--CcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCcceEEEEcCCCc Confidence 11110 001111111 12335799999875 5677888999999999999998 499999999999999876543 3 Q ss_pred eeEEE-cCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHH Q lcl|Aclame:pro 142 VYWWV-PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRND 220 (344) Q Consensus 142 ~~~~~-~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~ 220 (344) .+|.+ ..+|+.+.++++||||+|.++ .++++|+||+..+.+++.++.++++|..++|+||++|++||+++ +.+++|+ T Consensus 160 ~~y~~~~~~g~~~~~~~~~iih~r~~~-~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil~~~-~~l~~e~ 237 (432) T protein:vir:97 160 TAYRYRRTDGQMIDIPRQQIWKIMGYS-LDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQID-RFLTDDQ 237 (432) T ss_pred EEEEEEecCceEEEEccccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeEecC-CCCCHHH Confidence 34444 456788899999999999875 47899999999999999999999999999999999999999976 5689999 Q ss_pred HHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhcccccc-ccccc Q lcl|Aclame:pro 221 IEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPEN-VGSLG 299 (344) Q Consensus 221 ~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~-~~~~~ 299 (344) ++++++.|. |..|+++++|+ ++|++|+|++++++|+||+|++++++++||++|||||++||+...+ .++++ T Consensus 238 ~~~~~~~~~---~~~nag~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~~s 309 (432) T protein:vir:97 238 YDSFSKKVS---GSVEAGRAPLL-----EGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGS 309 (432) T ss_pred HHHHHHHHh---hhhcCCCceec-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCcccccch Confidence 999888774 56788999998 5689999999999999999999999999999999999999987543 34568 Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 300 DIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 300 n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) |+|++.+.|+++||.||++.||+ ||++|.....+ ..|+++||.- T Consensus 310 ~~e~~~~~f~~~tl~P~~~~ie~~ln~kLl~~~e~-~~~~~~fd~~ 354 (432) T protein:vir:97 310 GIESQQLGFLTMTLSPWLRRIEQSIALNLLTPAER-RRYFADFDTS 354 (432) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccc-CceEEEeech Confidence 99999999999999999999986 99998765433 4577777754 No 55 >protein:vir:80333 Length: 419 # NCBI annotation: gp4, phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111083;genbank:gi:134288632;genbank:GeneID:4960580 Probab=100.00 E-value=7.1e-59 Score=339.39 Aligned_cols=324 Identities=16% Similarity=0.181 Sum_probs=239.1 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcC---------CceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFG---------EPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVH 71 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~---------~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ 71 (344) |-..|.+.+.....+. ....-+..+-.+ .+..+|...+++.|+.+..+. +-+.|+.++. .+.. T Consensus 1 m~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~s~~~~~v~~~~al~~~~v~~cv~~ia~~-ia~lp~~~~~------~~~~ 72 (419) T protein:vir:80 1 MFFSRQLLSNLGQTQP-GSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAES-IAQLPVELYE------RSGD 72 (419) T ss_pred CCcccccccccCcCCC-CcchhhHHhhcccccccCcccChHHhhccHHHHHHHHHHHHh-hccCceEEEE------ecCC Confidence 7755433222221111 111111111011 112234455666666665543 3355554321 1111 Q ss_pred hhhhhhhcchhhHHhhhcCCCCCH-HHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCce--eEEEcC Q lcl|Aclame:pro 72 HSSPIYVKRNILASTFIPHPWLSQ-QDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV--YWWVPS 148 (344) Q Consensus 72 ~~~~i~~k~n~~~~~~~pnp~~~~-~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~--~~~~~~ 148 (344) ....+....-.-+...+|||+++. +||+.++.+++++||||++++|+..|+|++|+|++|..|++..+.+. +|++.+ T Consensus 73 ~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~i~~~~v~i~~~~~~~~~y~~~~ 152 (419) T protein:vir:80 73 DRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAG 152 (419) T ss_pred CcccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEECCCceEEEEEcC Confidence 000000000112234589999986 56778889999999999999999999999999999999998776653 344432 Q ss_pred CceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecC---CCCCHHHHHHHH Q lcl|Aclame:pro 149 FNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTD---AVQDRNDIEMLR 225 (344) Q Consensus 149 ~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~---~~~~~e~~~~l~ 225 (344) . ..+++++|+|++.++ .+++||+||+..+..++.++.++++|..++|+||++|++||+++. +..++++.++++ T Consensus 153 ~---~~~~~~~i~h~~~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~~ 228 (419) T protein:vir:80 153 A---DPLPQRLVHHVRWMS-INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRIT 228 (419) T ss_pred c---cccchhheEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCHHHHHHHH Confidence 2 248899999999875 578999999999999999999999999999999999999999864 345899999999 Q ss_pred HHHHH-hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHH Q lcl|Aclame:pro 226 ENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKV 304 (344) Q Consensus 226 ~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~ 304 (344) +.|++ +.|.+|+++++++ +.|++|+|++.+++|+||+|++++++++||++|||||.+||+. +.++++|+|++ T Consensus 229 ~~~~~~~~g~~n~g~~~vl-----~~g~~~~~l~~s~~d~q~~e~~~~~~~~Ia~~fgVPp~llg~~--~~~t~~n~e~~ 301 (419) T protein:vir:80 229 DGWNAKFGGSGNAKKVALL-----QEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNEL--ERATFSNIEHQ 301 (419) T ss_pred HHHHHHhcCccccCCceec-----CCCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCC--CCCCcccHHHH Confidence 99965 5778899999998 5689999999999999999999999999999999999999975 45789999999 Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 305 AKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 305 ~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) .+.|+++||.|+++.||+ ||.+|.....+ ..|.++||-- T Consensus 302 ~~~f~~~~l~P~~~~ie~~l~~kll~~~~~-~~~~i~fd~~ 341 (419) T protein:vir:80 302 SLQFVIYTLLPWVKRHEQAKTRDLLLPSER-KQYFIEYNLA 341 (419) T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCcccc-CCeEEEEech Confidence 999999999999999985 99998765443 4677777644 No 56 >protein:vir:1431 Length: 419 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536360;genbank:gi:17975165;genbank:GeneID:929165 Probab=100.00 E-value=6.4e-59 Score=339.61 Aligned_cols=323 Identities=15% Similarity=0.160 Sum_probs=236.9 Q ss_pred CCCCCCCCCCcchhhcccccccee-EEEc--------CCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKME-AFTF--------GEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVH 71 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~-~f~~--------~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ 71 (344) |=-.++..+.......+.. .-.. +|.. -.++.+|..++++.|+.+..+. +-+.|+.++. .+.. T Consensus 1 ~~~~r~~~~~~~~~~~~~~-~~~~~~~g~~~s~~~~~vt~~~al~~~~v~~~v~~ia~~-iA~lp~~~~~------~~~~ 72 (419) T protein:vir:14 1 MFFSRQLLSNLGQTQMSAG-GWVSALLGSSRSDSGQVVTPASALALTVLQNCVTLLAES-IAQLPIELYE------RSGE 72 (419) T ss_pred CcccccccccccccccCcc-hhhHHhhcCCCccCCcccchHHhhccHHHHHHHHHHHHh-hccCceEEEE------ecCC Confidence 4333322111111111110 0000 1100 0112244555666666665553 3345554321 1111 Q ss_pred h-hhhhhhcchhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc--eeEEEc Q lcl|Aclame:pro 72 H-SSPIYVKRNILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--VYWWVP 147 (344) Q Consensus 72 ~-~~~i~~k~n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~--~~~~~~ 147 (344) . ..+..... .-+...+|||+++.. ||+.++.+++++||||+++.|+..|+|++|+|++|..|++..+.+ .+|++. T Consensus 73 ~~~~~~~~~l-~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~l~pl~~~~v~v~~~~~~~~~y~~~ 151 (419) T protein:vir:14 73 DRKPATDHPL-YSILKYEPNSWQTPFEYQEQSQVAVGLRGNSYSFIDRDSDGVIQGLYPLDNEAVTVMRGSDLKPVYRVR 151 (419) T ss_pred ccccccccHH-HHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEECCCceEEEEEc Confidence 0 01111110 112235799999875 567888999999999999999999999999999999998876554 344444 Q ss_pred CCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecC---CCCCHHHHHHH Q lcl|Aclame:pro 148 SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTD---AVQDRNDIEML 224 (344) Q Consensus 148 ~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~---~~~~~e~~~~l 224 (344) ... .++.++|+|+|.++ .++++|+||+..+.+++.++.++++|+.++|+||++|+|||+++. +..++++++++ T Consensus 152 ~~~---~~~~~~i~h~~~~~-~dg~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~~~ 227 (419) T protein:vir:14 152 GSD---PMPQRLVHHVRWMS-INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPKDAPALKDQASVDRI 227 (419) T ss_pred cCc---ccchhheeEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEecCCCCcccCHHHHHHH Confidence 332 37889999999876 578999999999999999999999999999999999999999864 23479999999 Q ss_pred HHHHHH-hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHH Q lcl|Aclame:pro 225 RENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEK 303 (344) Q Consensus 225 ~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~ 303 (344) ++.|++ +.|.+|+++++++ +.|++|+|++.+++|+||+|++++++++||++|||||++||+. +.++++|+|+ T Consensus 228 ~~~~~~~~~g~~nag~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVpp~~lg~~--~~~t~s~~E~ 300 (419) T protein:vir:14 228 TDGWNAKFGGSGNAKKVALL-----QEGMTFRPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNEL--ERATFSNIEH 300 (419) T ss_pred HHHHHHHhcCccccCCceec-----CCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCC--CCCCcccHHH Confidence 999965 5778999999998 5689999999999999999999999999999999999999975 4578999999 Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 304 VAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 304 ~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +.+.|+++||.|++++||+ ||.+|..+..+ ..|.++||-- T Consensus 301 ~~~~f~~~~L~P~~~~ie~~l~~kll~~~~~-~~~~i~fd~~ 341 (419) T protein:vir:14 301 QSLQFVIYTLLPWVKRHEQAKTRDLLLPSER-KQYFIEYNLA 341 (419) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcccc-CCeEEEEech Confidence 9999999999999999985 99999776544 5677777643 No 57 >protein:vir:8317 Length: 409 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817885;genbank:gi:29566318;genbank:GeneID:1259513 Probab=100.00 E-value=1.6e-58 Score=337.51 Aligned_cols=313 Identities=15% Similarity=0.132 Sum_probs=221.0 Q ss_pred CCCCCCCCCCcchhhcccccc-ce----eEEEcCCceec-----cCcchhhhhhhhhccchhhhccccHHHHHHHHhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAP-KM----EAFTFGEPVPV-----LDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAV 70 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~-~~----~~f~~~~p~~~-----~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 70 (344) |.+.++....+...+.+.... .. ..++....+++ +....++.|+.+..+. +-+.|+.++ +... T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~t~~~~~~~~~v~acV~~Ia~~-iA~lpl~~~------~~~~ 104 (409) T protein:vir:83 32 MVEFRGPEEEPEARALPWIRPTAWSGYPESWATPSWGSAQDKLRTLIDVAWACIDLNASV-LSSMPIYRM------RNGR 104 (409) T ss_pred eeeccCCCcchhhhhcccccccccccccccccccCccccchhhHhhhHHHHHHHHHHHHh-hccCceEEe------eCCc Confidence 555444433333222211110 00 01111111111 1122334444443332 223343221 1000 Q ss_pred hhhhhhhhcchhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEE-eeCCCCceEEEEEeCcceeeccccCce--eEEE Q lcl|Aclame:pro 71 HHSSPIYVKRNILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEK-RYSTTGKVIRLETSPAKYTRRGVEEDV--YWWV 146 (344) Q Consensus 71 ~~~~~i~~k~n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~-~r~~~G~~~~L~pl~~~~~~~~~~~~~--~~~~ 146 (344) . .... ..+....||++|++. |++.++.++++ ||+|+++ .|+..|.|++|+|++|..|++..+.+. +|++ T Consensus 105 ----~-~~~~-~~ll~~~PN~~~t~~~f~~~l~~~lll-Gnay~~~i~r~~~G~~~~L~pl~p~~v~v~~~~~g~~~y~~ 177 (409) T protein:vir:83 105 ----I-IDSV-AWMSNPDPEVYTSWQEFAKQLFWDFQL-GEAFVLPMAHGSDGYPIRFRVVPPWLVNVELKKGARREYRI 177 (409) T ss_pred ----c-ccch-hhhcccCCCCCCCHHHHHHHHHHHHhh-CCcEEEEEEECCCCcEEEEEEECCcceEEEEcCCceEEEEE Confidence 0 0001 112345799999975 56677778777 9999985 589999999999999999887665553 4444 Q ss_pred cCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHH Q lcl|Aclame:pro 147 PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRE 226 (344) Q Consensus 147 ~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~ 226 (344) .. ...++||||+|.+++.+++||+||+..+++++.++.++++|+.++|+||++|+|||+++ +.+++|+++++++ T Consensus 178 ~~-----~~~~~eiiHir~~~~~~~~~G~spi~~~~~~i~~~~a~~~~~~~~f~nga~p~gil~~~-~~ls~e~~~~~~~ 251 (409) T protein:vir:83 178 GG-----LNVTDEILHIRYQGNTADAHGHGPLESAAPRQVVIGLLQKYVQNLAETGGVPLYWLGVE-RRLSETEAVDLMD 251 (409) T ss_pred cc-----ccCccceEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEeecC-CCCCHHHHHHHHH Confidence 32 23468999999988889999999999999999999999999999999999999999875 5789999999999 Q ss_pred HHHHhhcccccccccccCCCCcccccee-eeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccc-cccccccHHHH Q lcl|Aclame:pro 227 NMVKSKGRNNFKNLFLYAPQGKADGIKI-IPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPE-NVGSLGDIEKV 304 (344) Q Consensus 227 ~~~~~~g~~n~~~~~vl~~~~~~~g~~~-~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~-~~~~~~n~e~~ 304 (344) .|++.. .+|+++++++. +|+++ ++++++++|+||+|++++++++||++|||||++||+..+ +..+|+|+|++ T Consensus 252 ~~~~~~-~~nag~~~il~-----~g~~~~~~~~~s~~d~q~le~r~~~~~eIa~~fgVPp~llg~~~~~~~~tysn~eq~ 325 (409) T protein:vir:83 252 RWIESR-SKYAGHPALVT-----GGATLNQAKSMSAQDLSLMELTQFNEARIAILLGVPPFLVGLPGATGSLTYSNIEQL 325 (409) T ss_pred HHHHhh-CCccCccceec-----CCcccccccCCCHHHHHHHHHHHhhHHHHHHHhCCCHHHccCCCCccccccccHHHH Confidence 997654 45889888884 45665 689999999999999999999999999999999998654 34579999999 Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 305 AKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 305 ~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) .+.|++.||.||+++||+ ||++|..+ +++++|+.- T Consensus 326 ~~~f~~~tL~P~~~~ie~~l~~~Ll~~-----~~~~~f~~~ 361 (409) T protein:vir:83 326 FSFHDRSSLRPKATAVMAALDRWALPS-----PQHLELNRD 361 (409) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCC-----CcEEEeehh Confidence 999999999999999996 99998653 122334322 No 58 >protein:vir:3153 Length: 467 # NCBI annotation: capsid protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665924;genbank:gi:22091110;genbank:GeneID:951257 Probab=100.00 E-value=2e-58 Score=336.93 Aligned_cols=282 Identities=15% Similarity=0.182 Sum_probs=225.5 Q ss_pred HHHHHhhhhhhhhhhhhcchh-----------------------------hHHhhhcCCCCC---------HHHHHHHHH Q lcl|Aclame:pro 62 LAKSLRAAVHHSSPIYVKRNI-----------------------------LASTFIPHPWLS---------QQDFSRFVL 103 (344) Q Consensus 62 l~~~~~~~~~~~~~i~~k~n~-----------------------------~~~~~~pnp~~~---------~~~~~~~~~ 103 (344) |..+.+.++.+.+||...++. .+....||+.++ .++|+.++. T Consensus 1 l~~l~~~n~~v~~ci~~ia~~ia~~p~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~pn~~~~~~~~~~~t~~~~~~~~~~ 80 (467) T protein:vir:31 1 MAELLEHNETHAKCVHAKSRYVAGFGINIIPHPEAEDPDRDGEQYERVWDFWFGDDSNWQVGPMESERATATNVLQTAWT 80 (467) T ss_pred ChhhhhcCHHHHHHHHHHHHhhhcCCeEEEEccCcccccchhhhhhhHHHHhhccCCCccccchhhHhhHHHHHHHHHHH Confidence 333333333333333332222 122335666553 246778899 Q ss_pred HHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCceeEEEc--------------------------------CCce Q lcl|Aclame:pro 104 DFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVP--------------------------------SFNE 151 (344) Q Consensus 104 d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~~~~~~--------------------------------~~~~ 151 (344) +++++||||++++||..|+|++|+|+++.+|++..+...|+... ..+. T Consensus 81 ~l~l~Gn~~i~~~r~~~G~~~~l~~l~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (467) T protein:vir:31 81 DYEAIGWLTIEILTQTDGTPTGLAYVPGHTIRKRMDERGFVQLLEEKEKYFGVAGDRYQTNGNGDLDPVFVDADDGSTGT 160 (467) T ss_pred HHHhcCCeEEEEEECCCCcEEEEEEeCCceeEeeeecceeEeecCCceeeEEeccccceeecccceeeeeeeeccccccc Confidence 99999999999999999999999999999999876654332111 1244 Q ss_pred EEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHh Q lcl|Aclame:pro 152 PTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKS 231 (344) Q Consensus 152 ~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~ 231 (344) .+.++++||||+|.+++.+++||+||+.+++.++.++.++++|+.++|+||++|+|||.++++.+++++++++++.|++. T Consensus 161 ~~~~~~~diih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~~~~~~~~~ 240 (467) T protein:vir:31 161 SVSNPANELIFKRNHSPLYPHYGAPDIIPAVKTIRGDSAAQDYNIDFFENDGVPRIAIIVKGAELTEKGREEMRNLIEDN 240 (467) T ss_pred eeEeccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHHHHHHHHHHHHhh Confidence 56799999999999998999999999999999999999999999999999999999999988889999999999999753 Q ss_pred h------------cccccccccccCCCCc--cccceeeeccC-ChhHHHHHHHHHhhHHHHHHHhcCChHHhcccccccc Q lcl|Aclame:pro 232 K------------GRNNFKNLFLYAPQGK--ADGIKIIPLSE-VATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVG 296 (344) Q Consensus 232 ~------------g~~n~~~~~vl~~~~~--~~g~~~~pl~~-~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~ 296 (344) . |..|+++++++..+.+ ..+++++|++. +++|+||++++++++++||++|||||.+||+..+ ++ T Consensus 241 ~~~~~~~~~~~~~g~~n~~~~~~l~~g~~~~~~~~~~~~ls~~~~~d~qf~e~~~~~~~~Ia~~fgVpp~~lG~~~~-~~ 319 (467) T protein:vir:31 241 NEDNHRTAFIETEKIVQNEDYLNLADGADRSDVEIRLEPLTVGIDEEASFLEFRGRNEHDILKVHDVPPVIAGVVES-GA 319 (467) T ss_pred hcchhhhhhhhhcccccccccccccCCCcccccceeEEeccccChhhHHHHHHHHHHHHHHHHHhCCCHHHcccCCC-CC Confidence 2 5678999999877654 56788999975 6789999999999999999999999999998643 34 Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 297 SLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 297 ~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +++|+|++.+.|++.+|.|+++.|++ ||.+|.....+..+|+++|+-- T Consensus 320 ~~s~~e~~~~~f~~~~l~P~~~~ie~~ln~~l~~~~~~~~~~~i~f~~~ 368 (467) T protein:vir:31 320 FSTDAEEQRKEFAEETIQPKQHDFGELLYELVHKQGLDAPDWTIEFELA 368 (467) T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhccCCceEEEecc Confidence 45789999999999999999999986 9999977655556666666654 No 59 >protein:vir:96579 Length: 576 # NCBI annotation: ORF012 # Family: family:all:2446 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238542;genbank:gi:66391267;genbank:GeneID:5130361 Probab=100.00 E-value=6.7e-58 Score=334.02 Aligned_cols=334 Identities=14% Similarity=0.126 Sum_probs=224.9 Q ss_pred CCCCCCC-----CCCcchhhccccccceeEEEcC-----CceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhh-- Q lcl|Aclame:pro 1 MSKKKGK-----TPQPAAKTMTASAPKMEAFTFG-----EPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRA-- 68 (344) Q Consensus 1 m~~~~~~-----~~~~~~~~~~~~~~~~~~f~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~-- 68 (344) |+.-..+ +...+ +.++...|-+...+-+ .|.+.-...++.+++..+.+..++..+|++ ++..... T Consensus 35 ~~~~~~~~~~~~~~~~~-~~~a~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~npiv~~~I~~--ia~~vA~~~ 111 (576) T protein:vir:96 35 IRNIEEKSKELNKSLYG-KQQAYAEPFLEVMDTNPEFRTKRSYMKNSDNLHDVLKQFGNNPILNAIILT--RSNQVAMYC 111 (576) T ss_pred HHHhhhhhhhhccccCC-ccchhhcceeeeeecCCCccccCcchhhhhhhHHHHHHhhcCHHHHHHHHH--HHHHHHhhh Confidence 2111100 00000 0000011100001111 111111111222233222222232222222 1110000 Q ss_pred -----hh-hhhhhhhhc-----------------chhhHH-hhhcCCCC-C-HHHHHHHHHHHHhcCCceEEEee--CCC Q lcl|Aclame:pro 69 -----AV-HHSSPIYVK-----------------RNILAS-TFIPHPWL-S-QQDFSRFVLDFLVFGNAFLEKRY--STT 120 (344) Q Consensus 69 -----~~-~~~~~i~~k-----------------~n~~~~-~~~pnp~~-~-~~~~~~~~~d~ll~Gnay~~~~r--~~~ 120 (344) .. ..+-.+..| .+.+.. ...+||.+ + .+||+.++.+++++||||+++++ ++. T Consensus 112 ~~~~~~~~~~~~~i~lk~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~dlll~Gna~~~i~~~rd~~ 191 (576) T protein:vir:96 112 QPSRYNERGLGFEVRMRDLDAEPGKKEKEEIKRIENFILNTGRDKDIDRDSFQSFCRKIVRDTYTYDQVNFEKVFNKKNA 191 (576) T ss_pred hhhhhccccccceeEEecCcCccchhhhHhhhhHHhhHhhccCCCCCccccHHHHHHHHHHHHHhcCCeEEEEEEecCCC Confidence 00 000000000 011111 11244542 4 56889999999999999999985 456 Q ss_pred CceEEEEEeCcceeeccccCce--------eEEEcCCceEEEEecccEEEec-CCCC--CCCcccccchhhhHHHHHHHH Q lcl|Aclame:pro 121 GKVIRLETSPAKYTRRGVEEDV--------YWWVPSFNEPTAFAPGSVFHLL-EPDI--NQELYGLPEYLSALNSAWLNE 189 (344) Q Consensus 121 G~~~~L~pl~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~eIih~~-~~~~--~~~~~G~sp~~~~~~~i~~~~ 189 (344) |++++|+|++|.+|++..+.+. |+++..++....|+++||||++ .+.+ ..+.||+||+.+++.+|.++. T Consensus 192 g~~~~L~pl~p~~V~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~ 271 (576) T protein:vir:96 192 TTMDKFIAVDPSTIFYATDKNGKIIKGGKRFVQVINKKVVASFTSREMAMGIRNPRTELSSSGYGLSEVEIAMKQFIAYN 271 (576) T ss_pred CceEEEEEeCCceeEEEECCCCceeeeeeEEEEecCCceEEEecccceEEEeecCCCCcccCcccccHHHHHHHHHHHHH Confidence 8899999999999998766542 3445566777889999998765 4432 347899999999999999999 Q ss_pred HHHHHHHHHHHccCCCceEEEecC-CCCCHHHHHHHHHHHHH-hhcccccccc-cccCCCCccccceeeeccCChhHHHH Q lcl|Aclame:pro 190 SATLFRRKYYENGAHAGYIMYVTD-AVQDRNDIEMLRENMVK-SKGRNNFKNL-FLYAPQGKADGIKIIPLSEVATKDDF 266 (344) Q Consensus 190 ~a~~~~~~~f~Ng~~p~gil~~~~-~~~~~e~~~~l~~~~~~-~~g~~n~~~~-~vl~~~~~~~g~~~~pl~~~~~d~qf 266 (344) ++++|+.++|+||++|+|||++++ ..+++++++++++.|++ +.|.+|++++ +|+ ++|++|+|++++++|+|| T Consensus 272 ~~~~~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lr~~~~~~~~G~~nag~~p~vl-----~~G~~~~~ls~~~~d~qf 346 (576) T protein:vir:96 272 NTETFNDRFFSHGGTTRGILQIKSEQQQSQRALENFKREWKSSFSGINGSWQVPVVM-----ADDIKFVNMTPTANDMQF 346 (576) T ss_pred HHHHHHHHHHhccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceeec-----CCCceEEeccCChhhHHH Confidence 999999999999999999999875 46899999999999976 5778999985 677 568999999999999999 Q ss_pred HHHHHhhHHHHHHHhcCChHHhccccccc---------cccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccc Q lcl|Aclame:pro 267 FNIKKASAADLLDAHRIPFQLMGGKPENV---------GSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKN 336 (344) Q Consensus 267 ~e~~~~~~~~I~~~fgVPp~llG~~~~~~---------~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~ 336 (344) +|++++++++||++|||||++||+....+ .+++|+|++.+.|+++||.||+.+||+ ||.+|..+. ... T Consensus 347 le~~~~~~~~Ia~afgVPp~~lG~~~~~~~~g~~~~~s~t~sn~e~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~--~~~ 424 (576) T protein:vir:96 347 EKWLTYLINIISALYGIDPAEIGFPNRGGATGGKGGNTLNEADPGKKQQQSQNKGLQPLLRFIEDLINTHIISEY--SDK 424 (576) T ss_pred HHHHHHhHHHHHHHhCCCHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhc--cCc Confidence 99999999999999999999999875432 367999999999999999999999996 999998764 355 Q ss_pred cccccCCC Q lcl|Aclame:pro 337 YSLDTDNG 344 (344) Q Consensus 337 y~l~~d~g 344 (344) |.++|+.+ T Consensus 425 ~~~~f~r~ 432 (576) T protein:vir:96 425 YVFQFVGG 432 (576) T ss_pred eEEEeccC Confidence 78888888 No 60 >protein:vir:9702 Length: 406 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795464;genbank:gi:28876227;genbank:GeneID:1257772 Probab=100.00 E-value=1.4e-58 Score=337.73 Aligned_cols=316 Identities=14% Similarity=0.111 Sum_probs=237.9 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCce------eccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPV------PVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSS 74 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~ 74 (344) |+-.+++.......+. ....+..+++. .+|...+++.|+....+. +-+.|+-.+ +.+.. T Consensus 1 m~~f~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~Al~~~~V~~~i~~Ia~~-iA~lp~~~~------~~~g~--- 65 (406) T protein:vir:97 1 MSFFQPLGTSKVSYDD-----YISSVLAGDVSQKYLGVSALKNSDILTATSIIAGD-IARFPLVKK------DVNGD--- 65 (406) T ss_pred CccccccCCCCCCcch-----HHHHHhcCCCCcccccchhhccHHHHHHHHHHHHh-hhhCeeEEE------ecCcc--- Confidence 9988877654432111 11122222221 133445555555444332 223333111 11110 Q ss_pred hhhhcch-hhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCC-CCceEEEEEeCcceeeccccC--ceeEEE--c Q lcl|Aclame:pro 75 PIYVKRN-ILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYST-TGKVIRLETSPAKYTRRGVEE--DVYWWV--P 147 (344) Q Consensus 75 ~i~~k~n-~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~-~G~~~~L~pl~~~~~~~~~~~--~~~~~~--~ 147 (344) .+. .+. ..+....|||++++. ||+.++.++++.||||++++|+. .|++.+|+|++|..|++..+. ..+|.+ . T Consensus 66 ~~~-~~~~~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gnay~~i~r~~~~g~~~~L~~i~p~~v~v~~~~~~~~~y~~~~~ 144 (406) T protein:vir:97 66 IIH-DEDINYLLNVKSTSNASARTWKFAMAVNAILTGNSFSRILRDPKTNQALQFQFYRPSETTVEETDNHEIVYTFTDM 144 (406) T ss_pred ccc-cchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCCeEEEEEEECCCeeEEEEcCCceEEEEEEec Confidence 000 011 122335799999875 56778899999999999999985 689999999999999876543 345554 3 Q ss_pred CCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHH Q lcl|Aclame:pro 148 SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLREN 227 (344) Q Consensus 148 ~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~ 227 (344) .++..+.++++||||+|.++ .++++|+||+.++..++.++.++++|+.++|+||++|++|+. ++..+++++++++++. T Consensus 145 ~~~~~~~~~~~evih~r~~~-~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~~i~~-~~~~l~~e~~~~~~~~ 222 (406) T protein:vir:97 145 LTAKQVKCFAHDVIHWKFFS-HDTILGRSPLLSLGDEIDLQTGGINTLIKFFKDGFSSGILTM-KGAQLSGDARQRARQE 222 (406) T ss_pred CCceEEEEccccEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEe-cCCCCCHHHHHHHHHH Confidence 56788899999999999775 678999999999999999999999999999999999987765 6678999999999999 Q ss_pred HHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHH Q lcl|Aclame:pro 228 MVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKV 307 (344) Q Consensus 228 ~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~ 307 (344) |++..+++|+++++|+ ++|++|+||+.+++|+||+|++++++++||++|||||.+||+ .++++|++++.+. T Consensus 223 ~~~~~~g~n~g~~~vl-----~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~----~~~~~~~e~~~~~ 293 (406) T protein:vir:97 223 FEKMREGSVGGSPLVF-----DSTMEYTPLEIDTNVLQLITSNNFSTAQIAKALRVPSYKLGV----NSPNQSVAQLMED 293 (406) T ss_pred HHHHhcccccCceeec-----CCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHcCC----CCCcchHHHHHHH Confidence 9988877899999998 568999999999999999999999999999999999999985 3467899999999 Q ss_pred HHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 308 FVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 308 f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) |++.||.|+++.||+ +|.+|.....+ ..|+++||-- T Consensus 294 f~~~~l~P~~~~ie~~l~~kll~~~~~-~~~~i~fd~~ 330 (406) T protein:vir:97 294 YVTNDLPFYFDAITSELGLKTLNDKDR-RLYHIEFDTR 330 (406) T ss_pred HHHHHHHHHHHHHHHHHhhhhcChhhc-cceeEEEecC Confidence 999999999999986 99999765432 3455666533 No 61 >protein:vir:483 Length: 413 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543090;swissprot:trembl:q8w629;genbank:gi:18249902;uniprot:Q8W629;genbank:GeneID:929685 Probab=100.00 E-value=3.3e-58 Score=335.71 Aligned_cols=321 Identities=15% Similarity=0.218 Sum_probs=234.2 Q ss_pred CC---CCCCCCCCcchhhccccccceeEE-----EcCC----ceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhh Q lcl|Aclame:pro 1 MS---KKKGKTPQPAAKTMTASAPKMEAF-----TFGE----PVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRA 68 (344) Q Consensus 1 m~---~~~~~~~~~~~~~~~~~~~~~~~f-----~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 68 (344) |- ..++|...+... ...-...| ++.. ++..+...+++.|+....+. .-+.|+.++ +. T Consensus 1 ~~f~~~f~r~~~~~~~~----~~~~~~~~~~~~~~~~g~~v~~~~~l~~~~v~~~i~~Ia~~-iA~~p~~~~------~~ 69 (413) T protein:vir:48 1 MFFSGLFQRKSDAPVTT----PAELAEAIGLSYDTYTGKRISSQRAMRLTAVYSCVRVLAES-VGMLPCSLY------KI 69 (413) T ss_pred CccchhhccCccCCccc----hHHHHHhhhcCcccccCceechhhhhccHHHHHHHHHHHHh-hhhCceEEE------Ee Confidence 43 222222222111 00001111 1111 11223334455555444432 223333321 11 Q ss_pred hhhhh-hhhhhcchhhHHhhhcCCCCCH-HHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCce--eE Q lcl|Aclame:pro 69 AVHHS-SPIYVKRNILASTFIPHPWLSQ-QDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV--YW 144 (344) Q Consensus 69 ~~~~~-~~i~~k~n~~~~~~~pnp~~~~-~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~--~~ 144 (344) +.... .+...... -+....|||++++ +||+.++.++++.||||++++|+ .|+|++|+|+++..|++..+.+. +| T Consensus 70 ~~~~~~~~~~~~~~-~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~-~g~~~~L~~l~~~~v~~~~~~~~~~~y 147 (413) T protein:vir:48 70 SGTLKTRVVDERLH-KLVSAKPNGYMTPQEFWELVIVCLCLRGNFYAYKVKA-LGEVVELLPIDPGCVEPKLNSQWQPVY 147 (413) T ss_pred cCCcceeecccHHH-HHHHhhccCCCCHHHHHHHHHHHHhhcCceEEEEEeC-CCcEEEEEEEcCceEEEEEcCCceEEE Confidence 11100 00000001 1223579999987 56677888999999999999987 59999999999999997666542 33 Q ss_pred -EEcCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHH Q lcl|Aclame:pro 145 -WVPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEM 223 (344) Q Consensus 145 -~~~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~ 223 (344) ....+|....|+++||||+|.++. ++++|+||+..+..++.++.++.+|+.++|+||++|++||+++ +.+++|+.++ T Consensus 148 ~~~~~~g~~~~~~~~evih~~~~~~-d~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~-~~~~~e~~~~ 225 (413) T protein:vir:48 148 QVTFPDGSVDVLTQDEIWHVRTLTL-DGLVGLNPIAYAREAISLAAATEEHGARLFGNGAVTSGVLRTE-QKLTPDAYER 225 (413) T ss_pred EEEecCceEEEEccccEEEecCcCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeC-CCCCHHHHHH Confidence 344567788899999999998864 6899999999999999999999999999999999999999986 4689999999 Q ss_pred HHHHHHH-hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHH Q lcl|Aclame:pro 224 LRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIE 302 (344) Q Consensus 224 l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e 302 (344) +++.|++ +.|.+|+++++|+ +.|++|+|++.+++|+||+|.+++++++||++|||||++||+. +.++++|+| T Consensus 226 ~~~~~~~~~~g~~n~g~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~--~~~t~~n~e 298 (413) T protein:vir:48 226 LKKDFEERHTGLGNAHRPMIL-----EMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNT--DRATFNNIE 298 (413) T ss_pred HHHHHHHHhcCccccCcceec-----CCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC--cCCCcccHH Confidence 9999976 4677999999998 5689999999999999999999999999999999999999975 457899999 Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 303 KVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 303 ~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) ++.+.|+++||.|++++||+ ||++|..+..+ .+|+++||-- T Consensus 299 ~~~~~f~~~~i~P~~~~ie~~l~~~L~~~~~~-~~~~~~fd~~ 340 (413) T protein:vir:48 299 ELGLGFINYSLVPYLTRIEQRINTGLVRESKQ-GKFYAKFNAG 340 (413) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcccc-CCeEEEEech Confidence 99999999999999999985 99999765433 4566666543 No 62 >protein:vir:1266 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690758;genbank:gi:22854998;genbank:GeneID:955213 Probab=100.00 E-value=2.4e-58 Score=336.51 Aligned_cols=323 Identities=16% Similarity=0.153 Sum_probs=235.4 Q ss_pred CCCCC--CCCCCcchhhccccccceeEEEcC--------CceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhh Q lcl|Aclame:pro 1 MSKKK--GKTPQPAAKTMTASAPKMEAFTFG--------EPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAV 70 (344) Q Consensus 1 m~~~~--~~~~~~~~~~~~~~~~~~~~f~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 70 (344) |=-+| +|+...+.........-...|+-. .+...+...+++.|+....+. +-+.|+.++ +... T Consensus 1 m~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~Ia~~-ia~l~~~~~------~~~~ 73 (416) T protein:vir:12 1 MLLERMFEKRSGSSDHEDGFNNILLNMFGGRKTASGERVSESNSLVQPDIFACVNVLSDD-IAKLPIHTY------KRTD 73 (416) T ss_pred CccchhcccccCccccCccchhHHHHhhcCcccccCceechhhhhccHHHHHHHHHHHHh-hhhCceEEE------EecC Confidence 54443 222222211110000001111100 001122233344444443332 223333221 1100 Q ss_pred hhhhhhhhcchhh--HHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccC---ceeE Q lcl|Aclame:pro 71 HHSSPIYVKRNIL--ASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEE---DVYW 144 (344) Q Consensus 71 ~~~~~i~~k~n~~--~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~---~~~~ 144 (344) ......+-+.+ +...+|||++++. ||+.++.+++++||||+++.|+..|+|.+|+|++|.+|++..+. ..|| T Consensus 74 --~~~~~~~~~~l~~~l~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~~ 151 (416) T protein:vir:12 74 --GGIERKPEHKSAHAVYARPNPYMTAFTWKKLMMTHVLTWGNAYSYIQFGSHGYPEALFPLRPDYTNAYVHPTTGMLWY 151 (416) T ss_pred --CccccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEeCCCcEEEE Confidence 00000011111 2345799999875 56788899999999999999999999999999999999865432 3477 Q ss_pred EEcCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHH Q lcl|Aclame:pro 145 WVPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEML 224 (344) Q Consensus 145 ~~~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l 224 (344) .+..+|..+.++++||||+|.+++ ++++|+||+.++.+++.++.++++|+.++|+||++|++||+++ +.+++|+++++ T Consensus 152 ~~~~~g~~~~~~~~eiih~~~~~~-~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~-~~~~~e~~~~~ 229 (416) T protein:vir:12 152 QTVLNGKAIELYDYEVLHFKGLST-DGIHGKSPIGVVREHIGAQAAATKYNAKLYKNEATPRGILKVP-AFLDEKPKENV 229 (416) T ss_pred EEecCCeEEEecCccEEEecCcCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEecC-CCCCHHHHHHH Confidence 788888899999999999998864 6899999999999999999999999999999999999999986 57899999999 Q ss_pred HHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHH Q lcl|Aclame:pro 225 RENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKV 304 (344) Q Consensus 225 ~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~ 304 (344) ++.|+... |+++++|+ ++|++|+|++++++|+||+|++++++++||++|||||+++|+. ..++++|+|++ T Consensus 230 ~~~~~~~~---~~~~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~--~~~t~sn~e~~ 299 (416) T protein:vir:12 230 RKEWKRVN---KVENIAII-----DYGLEYQSISMPLQEAQFVESMKFNKAQISMIYKVPLHKLNEL--DKATFSNIEHQ 299 (416) T ss_pred HHHHHHHh---cCCCeeec-----CCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCc--cCCCcccHHHH Confidence 99997654 45778888 5689999999999999999999999999999999999999975 45689999999 Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 305 AKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 305 ~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) .+.|+++||.|++..||+ +|++|..+..+-.+|+++||-- T Consensus 300 ~~~f~~~~l~P~~~~ie~~l~~~l~~~~~~~~g~~i~fd~~ 340 (416) T protein:vir:12 300 SIEYVRNTLQPWIVNFEQELNVKLFLDHDQKSGHYVKFNID 340 (416) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhhcCCceEEeech Confidence 999999999999999986 9999977654445577777644 No 63 >protein:vir:100691 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:2446 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164747;genbank:gi:56693160;genbank:GeneID:3197324 Probab=100.00 E-value=7.8e-58 Score=333.67 Aligned_cols=335 Identities=10% Similarity=0.070 Sum_probs=228.9 Q ss_pred CCCCCCCCC---------------CcchhhccccccceeEEEcCCceeccCcc------hhhhhhhhhccchhhhccccH Q lcl|Aclame:pro 1 MSKKKGKTP---------------QPAAKTMTASAPKMEAFTFGEPVPVLDRR------DILDYVECISNGRWYEPPVSF 59 (344) Q Consensus 1 m~~~~~~~~---------------~~~~~~~~~~~~~~~~f~~~~p~~~~~~~------~~~~~~~~~~~~~~~~~p~~~ 59 (344) |+.||.--- .+.+.........+. +..++|...-... ++-+++..+.+..++...++. T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~t 91 (535) T protein:vir:10 13 LSNKKSTSYIELGDYDKDIVNKAIRPGRASARDTVDGID-IADGNVAGQYSVASISDVLSTKKLLKAYADNDIVQAIIRT 91 (535) T ss_pred hhhhhhhhhHHHhhhhHHHHHhhhhhhhhhhhccccccc-cccCCcccccccCccccccCHHHHHHHhccChhHHHHHHH Confidence 666663210 001111111111111 2224442221110 111222222222222222211 Q ss_pred HHHHHHHh--------hhhhhhhhhhhcc------------hh---hHHhhhcCCCCCHH-----HHHHHHHHHHh-cCC Q lcl|Aclame:pro 60 TGLAKSLR--------AAVHHSSPIYVKR------------NI---LASTFIPHPWLSQQ-----DFSRFVLDFLV-FGN 110 (344) Q Consensus 60 ~~l~~~~~--------~~~~~~~~i~~k~------------n~---~~~~~~pnp~~~~~-----~~~~~~~d~ll-~Gn 110 (344) .++... +....+..+..|. ++ -+...+||+++++. +++.++.++++ .|| T Consensus 92 --~~~~va~~~~i~~~s~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~~~~~~~~~~~~~lv~d~l~~~g~ 169 (535) T protein:vir:10 92 --RTNQVLTYSNPSRYNRNGVGFKVELKDATKVMSKAQIKRAHEIEDFIYNTGSEYYEWRDTFPRLLTKIINDMYVQDQI 169 (535) T ss_pred --HHHHHHHHHHHHHHhcccCcceeEEEeccCCCcchhhhhhhHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHhhCCc Confidence 011000 0000011111110 11 12335799998763 34456667665 458 Q ss_pred ceEEEeeCCCCceEEEEEeCcceeeccccC------ceeEEEcCCceEEEEecccEEEecCCCC---CCCcccccchhhh Q lcl|Aclame:pro 111 AFLEKRYSTTGKVIRLETSPAKYTRRGVEE------DVYWWVPSFNEPTAFAPGSVFHLLEPDI---NQELYGLPEYLSA 181 (344) Q Consensus 111 ay~~~~r~~~G~~~~L~pl~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~eIih~~~~~~---~~~~~G~sp~~~~ 181 (344) +|++++|+..|+|++|+|++|..|++..+. ..||++..++....|+++||||++.++. .+++||+||+.++ T Consensus 170 ay~~i~r~~~G~~~~L~~l~p~~V~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~eiih~~~~~~~~~~~~~~G~Spi~~~ 249 (535) T protein:vir:10 170 NIERIFKNDSNELDHFNAVDASKVVISYSPRSKDQPRKFEQFVSETKSVKFSERNLTFINYWNLSDTDRRGYGYSPVEAS 249 (535) T ss_pred eEEEEEECCCCcEEEEEEeCCceeEEEEcCccccCceEEEEEecCceeEEECcccEEEEeccCCCCcccccccccHHHHH Confidence 999999999999999999999999876542 2467777788888999999999997543 3478899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCceEEEecC---CCCCHHHHHHHHHHHHH-hhcccccccccccCCCCccccceeeec Q lcl|Aclame:pro 182 LNSAWLNESATLFRRKYYENGAHAGYIMYVTD---AVQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPL 257 (344) Q Consensus 182 ~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~---~~~~~e~~~~l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl 257 (344) ..+|.++.++++|+.++|+||++|+|||++++ +.++++++++++++|++ +.|.+|+++++|+.+ .|++|+|+ T Consensus 250 ~~~i~~~~aa~~~~~~~f~ng~~p~giL~~~~~~~~~ls~e~~e~lk~~~~~~~~G~~nag~~~vl~~----~g~~~~~l 325 (535) T protein:vir:10 250 IPLIRAIYDTEQFNARFFSQGGTTRGILVIDQDGDAQANQMMLAGIRRQWTSQGSGLGGAWKIPILAA----KDAKFVNM 325 (535) T ss_pred HHHHHHHHHHHHHHHHHHhccCCccEEEEecCCCCcccCHHHHHHHHHHHHHHhcCcccccccccccC----CCceEEec Confidence 99999999999999999999999999999864 45899999999999976 577899999877742 58999999 Q ss_pred cCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccc----------cccccHHHHHHHHHHHHHHHHHHHHHH-HHHh Q lcl|Aclame:pro 258 SEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENV----------GSLGDIEKVAKVFVRNELIPLQDRIRE-INGW 326 (344) Q Consensus 258 ~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~----------~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~ 326 (344) +++++|+||+|++++++++||++|||||++||+..+.+ .+.+++|++...|++.||.||++.||+ ||++ T Consensus 326 ~~~~~D~qfle~~~~~~~eIa~afgVPp~~lG~~~~at~sn~~~~~~~~~~s~~E~~~~~~~~~~L~P~l~~ie~~ln~~ 405 (535) T protein:vir:10 326 TQNSRDMEFDKFLNFMIYDTAAIFQMQPEEINFPNNGGSTGKSGTKSVNEGSTAKAKLESSKDKGLTPLLSFIEQVINDK 405 (535) T ss_pred CCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh Confidence 99999999999999999999999999999999864321 223567888889999999999999996 9999 Q ss_pred hCccceeccccccccCCC Q lcl|Aclame:pro 327 IGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 327 L~~~~irf~~y~l~~d~g 344 (344) |..+.- ..|+|+|+.- T Consensus 406 Ll~~~~--~~~~f~f~~l 421 (535) T protein:vir:10 406 IMRYVD--TDYRFSFTLG 421 (535) T ss_pred cccccC--CeEEEEeccc Confidence 987542 3477788654 No 64 >protein:vir:93943 Length: 409 # NCBI annotation: ORF010 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239936;genbank:gi:66395598;genbank:GeneID:5131009 Probab=100.00 E-value=7.8e-58 Score=333.66 Aligned_cols=320 Identities=12% Similarity=0.129 Sum_probs=232.4 Q ss_pred CCCCCCCCCCcch-hhccccccceeEEEcCC----------ceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAA-KTMTASAPKMEAFTFGE----------PVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAA 69 (344) Q Consensus 1 m~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~----------p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~ 69 (344) |+|.+...+-.+. .+.....+....+.+.. +..++...+++.|+....+. +-+.|+.++. .. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~V~~ci~~Ia~~-ia~lp~~~~~------~~ 73 (409) T protein:vir:93 1 MAKENIVTRIKKKLIDNWIDQSTSKLYDFSPWKNRSFWGVINNTLETNETIFSAITKLSNS-MASLPLKMYE------DY 73 (409) T ss_pred CCccchhhhhhhhhhhhhhccccccccccccccCccccccchhhhhccHHHHHHHHHHHHh-hhhCceeEee------cc Confidence 9998866654442 11111111111222111 01112223333333332221 2223332210 00 Q ss_pred hhhhhhhhhcchhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---eeEE Q lcl|Aclame:pro 70 VHHSSPIYVKRNILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---VYWW 145 (344) Q Consensus 70 ~~~~~~i~~k~n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---~~~~ 145 (344) . ..... -..+...+|||++++. ||+.++.+++++||||+++.|+..|++++|+|++|..|++..+.+ .+|. T Consensus 74 ~----~~~~~-~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~~~~~~~~~~~~y~ 148 (409) T protein:vir:93 74 K----VVNTE-VSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYS 148 (409) T ss_pred c----cccch-HHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEE Confidence 0 00000 0113345799999875 567888999999999999999999999999999999998765433 3444 Q ss_pred E-cCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHH Q lcl|Aclame:pro 146 V-PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEML 224 (344) Q Consensus 146 ~-~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l 224 (344) + ..+|..+.|+++||||+|.+++.+++||+||+.++.+++.++.++++++ ++.++..+++|++ +++.+++++++++ T Consensus 149 ~~~~~g~~~~~~~~eVih~r~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~-~~~~l~~e~~~~~ 225 (409) T protein:vir:93 149 IHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLK-YGSNVGKEKRQQV 225 (409) T ss_pred EEcCCceEEEEccccEEEeCCCCCCCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCceEEe-cCCCCCHHHHHHH Confidence 4 4567788999999999999888899999999999999999999999884 5666666666665 5678999999999 Q ss_pred HHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHH Q lcl|Aclame:pro 225 RENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKV 304 (344) Q Consensus 225 ~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~ 304 (344) ++.|++.. +|.++++|+ ++|++|+|++++++|+||+|++++++++||++|||||++||+. ++++++|+|++ T Consensus 226 ~~~~~~~~--~~~g~~~vl-----~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~--~~~~~sn~e~~ 296 (409) T protein:vir:93 226 LEDFKQYY--EENGGILFQ-----EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNAR--SNTNFAKNEEL 296 (409) T ss_pred HHHHHHHh--hcCCCeeec-----CCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC--CCCCcccHHHH Confidence 99998754 366788888 5789999999999999999999999999999999999999974 56789999999 Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 305 AKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 305 ~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) .+.|++.||.|+++.||+ +|.+|..+..+-..+.++||-. T Consensus 297 ~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~~~~~~fd~~ 337 (409) T protein:vir:93 297 NRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVK 337 (409) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcccccCcceEEeech Confidence 999999999999999985 9999987654444566777654 No 65 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=100.00 E-value=2.1e-57 Score=331.31 Aligned_cols=332 Identities=12% Similarity=0.083 Sum_probs=228.6 Q ss_pred CCCCCCCCCCcchhhcccccc-ce-eEEEcCCceec----------cCcchhhhhhhhhccchhhhccccHHHHHHHHhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAP-KM-EAFTFGEPVPV----------LDRRDILDYVECISNGRWYEPPVSFTGLAKSLRA 68 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~-~~-~~f~~~~p~~~----------~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 68 (344) |+.+.+++..+.........+ +. .+-+..+|... +...+++.|+....+ ..-+.|+.++.-.+ . T Consensus 76 i~~pfkkk~~~~~~d~f~~s~es~s~vtsls~pdaf~~vnVs~~~AlknsaV~scI~~IA~-sIAsLPlklYrr~e---d 151 (945) T protein:vir:10 76 IIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPK-KLTSKELEIYKHIE---D 151 (945) T ss_pred ccccccccccchhhhhhhccCccceecccccCccceeeehhhhhhhhccHHHHHHHHHHHh-hhccCceEEEEecc---c Confidence 555555555543332211111 11 11122223111 112223333333222 12233332211000 0 Q ss_pred hhhhhhhhhhcchhhH--HhhhcCCCCCHH-----HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc Q lcl|Aclame:pro 69 AVHHSSPIYVKRNILA--STFIPHPWLSQQ-----DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED 141 (344) Q Consensus 69 ~~~~~~~i~~k~n~~~--~~~~pnp~~~~~-----~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~ 141 (344) ..........+.++.+ ..-+|||+|+.. +++.++.+++++||||++++||..|+|++|+|++|.+|++..+.+ T Consensus 152 G~~~~~~kk~~~~hpL~~LL~rPNp~mT~~eFwqsFl~~Lv~dLLL~GNAYieIiRd~~G~ii~L~pLdPs~Vti~~ddD 231 (945) T protein:vir:10 152 KHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSED 231 (945) T ss_pred CcccccccccccchHHHHHHhCCCcccChhHHHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEcCC Confidence 0000000011111111 123799999864 334567899999999999999999999999999999998765543 Q ss_pred --ee--EEE-cCCceEEEEecccEE-EecCCCCCCCc--ccccchhhhHHHHHHHHHHHHHHHHHHH-ccCCCceEEEec Q lcl|Aclame:pro 142 --VY--WWV-PSFNEPTAFAPGSVF-HLLEPDINQEL--YGLPEYLSALNSAWLNESATLFRRKYYE-NGAHAGYIMYVT 212 (344) Q Consensus 142 --~~--~~~-~~~~~~~~~~~~eIi-h~~~~~~~~~~--~G~sp~~~~~~~i~~~~~a~~~~~~~f~-Ng~~p~gil~~~ 212 (344) .+ |.. .+++....++++|+| |++.+++++.. ||+||+.++++++..+.++++|+.++|. ||++|+|||.++ T Consensus 232 G~~~y~Yv~~idG~~~~~v~a~DvIlhirn~s~DG~~~GyGlSPIeaa~~aI~~alAaek~aar~FskNGa~PsGILsvk 311 (945) T protein:vir:10 232 TGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIE 311 (945) T ss_pred CcEEEEEEEecCCceEEEecCCceEEEeccCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEec Confidence 22 332 344555678888865 66777765433 6999999999999999999999999995 789999999875 Q ss_pred C---------CCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcC Q lcl|Aclame:pro 213 D---------AVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRI 283 (344) Q Consensus 213 ~---------~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgV 283 (344) . +.+++++.+++|+.|++..++.|.+.++|+ ++|++|+|++.+++|+||+|++++++++||++||| T Consensus 312 g~~~~d~k~~~~LseEq~erlKe~wee~~sG~NnG~piVL-----deGmef~pLs~s~~DaQfLEsrkfs~eeIArAFGV 386 (945) T protein:vir:10 312 PPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILS-----GGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQV 386 (945) T ss_pred CccccccccccccCHHHHHHHHHHHHHHhCCcccccceec-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCC Confidence 3 457999999999999887777888888887 56899999999999999999999999999999999 Q ss_pred ChHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 284 PFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 284 Pp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) ||++||+. +.++++|++++.+.|++++|.|++..||+ +|++|.....+ ..++++|+.. T Consensus 387 PP~lLG~~--e~st~SNiEqq~~~Fv~~tL~Pil~~IEqeLNrkLl~~~eg-~~i~fdFd~l 445 (945) T protein:vir:10 387 SPQDVGIL--EGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNE-KDIKLWFKED 445 (945) T ss_pred CHHHcccC--CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-ceeEEEecch Confidence 99999985 44688999999999999999999999996 99988553222 3456677655 No 66 >protein:vir:81095 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429872;genbank:gi:156603925;genbank:GeneID:5525315 Probab=100.00 E-value=2.7e-57 Score=330.67 Aligned_cols=318 Identities=14% Similarity=0.163 Sum_probs=230.9 Q ss_pred CCCCCCCCCCcchh---hccccccceeEEEcCC-----ceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAK---TMTASAPKMEAFTFGE-----PVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHH 72 (344) Q Consensus 1 m~~~~~~~~~~~~~---~~~~~~~~~~~f~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~ 72 (344) |.--+++..+..+. ...........++-.. +..+|..++++.|+.+..+. .-+.|+.++. ... T Consensus 1 Mg~f~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~cv~~Ia~~-iA~~p~~~~~------~~~-- 71 (416) T protein:vir:81 1 MGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASD-LARMPIRVTV------NGQ-- 71 (416) T ss_pred CCcccccccccccCCCcchhHHHHHhccccccCccccchhhhhcchHHHHHHHHHHHh-hccCceEEec------Ccc-- Confidence 76654433222211 1111100001111111 22345566677777665543 3345543321 000 Q ss_pred hhhhhhcch-hhHHhhhcCCCCCH-HHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc--eeEEEc- Q lcl|Aclame:pro 73 SSPIYVKRN-ILASTFIPHPWLSQ-QDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--VYWWVP- 147 (344) Q Consensus 73 ~~~i~~k~n-~~~~~~~pnp~~~~-~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~--~~~~~~- 147 (344) ....+. ..+...+|||+|+. +||+.++.+++++||||++++|+..|+|++|+|++|..|++..+.. .+|.+. T Consensus 72 ---~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~ 148 (416) T protein:vir:81 72 ---INYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQR 148 (416) T ss_pred ---ccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEEEEEE Confidence 000111 11233579999987 4567888999999999999999999999999999999998766543 233221 Q ss_pred ----CCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHH Q lcl|Aclame:pro 148 ----SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEM 223 (344) Q Consensus 148 ----~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~ 223 (344) +.+....|+++||||+|.++ .++++|+||+.++.+++.++.++++|+.++|+||++|+|||++++...+++++++ T Consensus 149 ~~~~~~~~~~~~~~~evihir~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~ 227 (416) T protein:vir:81 149 IDSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDR 227 (416) T ss_pred ecCCCceeEEEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHH Confidence 23345789999999999775 5789999999999999999999999999999999999999999877778899999 Q ss_pred HHHHHHH-hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHH Q lcl|Aclame:pro 224 LRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIE 302 (344) Q Consensus 224 l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e 302 (344) +++.|++ +.|.+|+++++|+ +.|++|+|++.+++|+||+|++++++++||++|||||.++|+.. ++ .+.+ T Consensus 228 ~~~~~~~~~~g~~nag~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~---~~-~~~~ 298 (416) T protein:vir:81 228 AREEFHKSFSGTKQAGKVVVL-----DESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIET---AN-MSIT 298 (416) T ss_pred HHHHHHHHhcCccccCceeec-----CCCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCC---CC-ccHH Confidence 9999966 5677999999998 56899999999999999999999999999999999999999632 22 3556 Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 303 KVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 303 ~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) ++...| .+||+|++..||+ +|.+|..+ +.+++++||-- T Consensus 299 ~~~~~~-~~~l~P~~~~ie~~ln~~l~~~---~~~~~~~f~~~ 337 (416) T protein:vir:81 299 DANLDY-LSTLKPYITCVCAELNFKFNDE---YVNREFKFDTT 337 (416) T ss_pred HHHHHH-HHHHHHHHHHHHHHHhhhcccc---ccCceEEEech Confidence 665555 5699999999986 99999764 34566666544 No 67 >protein:vir:4598 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058443;genbank:gi:9635169;genbank:GeneID:1262702 Probab=100.00 E-value=2.7e-57 Score=330.67 Aligned_cols=318 Identities=14% Similarity=0.163 Sum_probs=230.9 Q ss_pred CCCCCCCCCCcchh---hccccccceeEEEcCC-----ceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAK---TMTASAPKMEAFTFGE-----PVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHH 72 (344) Q Consensus 1 m~~~~~~~~~~~~~---~~~~~~~~~~~f~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~ 72 (344) |.--+++..+..+. ...........++-.. +..+|..++++.|+.+..+. .-+.|+.++. ... T Consensus 1 Mg~f~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~cv~~Ia~~-iA~~p~~~~~------~~~-- 71 (416) T protein:vir:45 1 MGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASD-LARMPIRVTV------NGQ-- 71 (416) T ss_pred CCcccccccccccCCCcchhHHHHHhccccccCccccchhhhhcchHHHHHHHHHHHh-hccCceEEec------Ccc-- Confidence 76654433222211 1111100001111111 22345566677777665543 3345543321 000 Q ss_pred hhhhhhcch-hhHHhhhcCCCCCH-HHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc--eeEEEc- Q lcl|Aclame:pro 73 SSPIYVKRN-ILASTFIPHPWLSQ-QDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--VYWWVP- 147 (344) Q Consensus 73 ~~~i~~k~n-~~~~~~~pnp~~~~-~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~--~~~~~~- 147 (344) ....+. ..+...+|||+|+. +||+.++.+++++||||++++|+..|+|++|+|++|..|++..+.. .+|.+. T Consensus 72 ---~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~ 148 (416) T protein:vir:45 72 ---INYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQR 148 (416) T ss_pred ---ccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEEEEEE Confidence 000111 11233579999987 4567888999999999999999999999999999999998766543 233221 Q ss_pred ----CCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHH Q lcl|Aclame:pro 148 ----SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEM 223 (344) Q Consensus 148 ----~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~ 223 (344) +.+....|+++||||+|.++ .++++|+||+.++.+++.++.++++|+.++|+||++|+|||++++...+++++++ T Consensus 149 ~~~~~~~~~~~~~~~evihir~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~ 227 (416) T protein:vir:45 149 IDSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDR 227 (416) T ss_pred ecCCCceeEEEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHH Confidence 23345789999999999775 5789999999999999999999999999999999999999999877778899999 Q ss_pred HHHHHHH-hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHH Q lcl|Aclame:pro 224 LRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIE 302 (344) Q Consensus 224 l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e 302 (344) +++.|++ +.|.+|+++++|+ +.|++|+|++.+++|+||+|++++++++||++|||||.++|+.. ++ .+.+ T Consensus 228 ~~~~~~~~~~g~~nag~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~---~~-~~~~ 298 (416) T protein:vir:45 228 AREEFHKSFSGTKQAGKVVVL-----DESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIET---AN-MSIT 298 (416) T ss_pred HHHHHHHHhcCccccCceeec-----CCCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCC---CC-ccHH Confidence 9999966 5677999999998 56899999999999999999999999999999999999999632 22 3556 Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 303 KVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 303 ~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) ++...| .+||+|++..||+ +|.+|..+ +.+++++||-- T Consensus 299 ~~~~~~-~~~l~P~~~~ie~~ln~~l~~~---~~~~~~~f~~~ 337 (416) T protein:vir:45 299 DANLDY-LSTLKPYITCVCAELNFKFNDE---YVNREFKFDTT 337 (416) T ss_pred HHHHHH-HHHHHHHHHHHHHHHhhhcccc---ccCceEEEech Confidence 665555 5699999999986 99999764 34566666544 No 68 >protein:vir:94426 Length: 409 # NCBI annotation: ORF009 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240003;genbank:gi:66395665;genbank:GeneID:5133086 Probab=100.00 E-value=7.1e-57 Score=328.40 Aligned_cols=320 Identities=13% Similarity=0.135 Sum_probs=231.6 Q ss_pred CCCCCCCCCCcch---hhccccccceeEEEcCCc---e-----eccCcchhhhhhhhhccchhhhccccHHHHHHHHhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAA---KTMTASAPKMEAFTFGEP---V-----PVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAA 69 (344) Q Consensus 1 m~~~~~~~~~~~~---~~~~~~~~~~~~f~~~~p---~-----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~ 69 (344) |+|.+-..+-++. +.......++..|+...+ . ..+...+++.|+....+. +-+.|+.++ +.. T Consensus 1 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~v~~~i~~Ia~~-ia~lp~~~~------~~~ 73 (409) T protein:vir:94 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNS-MASLPLKMY------EDY 73 (409) T ss_pred CcccccchhhhhHHhhhhhcCCcccccccccccCccccccchhhhhccHHHHHHHHHHHHh-hhhCceeEe------ecc Confidence 9998865554443 111111111211221111 1 112223333443332221 223333221 100 Q ss_pred hhhhhhhhhcchhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---eeEE Q lcl|Aclame:pro 70 VHHSSPIYVKRNILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---VYWW 145 (344) Q Consensus 70 ~~~~~~i~~k~n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---~~~~ 145 (344) .. ..... ..+...+|||++++. ||+.++.+++++||||++++|+..|+|++|+|++|..|++..+.+ .+|. T Consensus 74 ~~----~~~~~-~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~ 148 (409) T protein:vir:94 74 KV----VNTEV-SDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYS 148 (409) T ss_pred cc----cchhH-HHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEE Confidence 00 00001 112345799999875 567788899999999999999999999999999999998765432 3444 Q ss_pred E-cCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHH Q lcl|Aclame:pro 146 V-PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEML 224 (344) Q Consensus 146 ~-~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l 224 (344) + ..+|..+.|+++||||+|.+++.+++||+||+..+.+++.++.+++.++ ++.++..+++++. .++.+++++.+++ T Consensus 149 ~~~~~g~~~~~~~~dvih~r~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~-~~~~l~~e~~~~~ 225 (409) T protein:vir:94 149 IHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLK-YGSNVGKEKRQQV 225 (409) T ss_pred EEcCCceEEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCeeEEe-cCCCCCHHHHHHH Confidence 4 4567788999999999999888899999999999999999999999984 5566656666665 5678999999999 Q ss_pred HHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHH Q lcl|Aclame:pro 225 RENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKV 304 (344) Q Consensus 225 ~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~ 304 (344) ++.|++..+ |.++++++ ++|++|+|++.+++|+||+|++++++++||++|||||++||+. +.++++|+|++ T Consensus 226 ~~~~~~~~~--~~g~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~--~~~~~sn~e~~ 296 (409) T protein:vir:94 226 LEDFKQYYE--ENGGILFQ-----EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNAR--SNTNFAKNEEL 296 (409) T ss_pred HHHHHHHhh--cCCCeeec-----CCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC--CCCCcccHHHH Confidence 999987543 67788888 5789999999999999999999999999999999999999974 45789999999 Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 305 AKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 305 ~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) .+.|+++||.|+++.||+ +|.+|..+..+-..+.++||-- T Consensus 297 ~~~f~~~~l~P~~~~ie~~ln~~Ll~~~~~~~~~~i~fd~~ 337 (409) T protein:vir:94 297 NRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVK 337 (409) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcccccCcceEEeech Confidence 999999999999999985 9999977643333566777654 No 69 >protein:vir:96980 Length: 409 # NCBI annotation: ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Probab=100.00 E-value=1.3e-56 Score=327.03 Aligned_cols=320 Identities=13% Similarity=0.133 Sum_probs=229.3 Q ss_pred CCCCCCCCCCcch---hhccccccceeEEEcCC--------ceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAA---KTMTASAPKMEAFTFGE--------PVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAA 69 (344) Q Consensus 1 m~~~~~~~~~~~~---~~~~~~~~~~~~f~~~~--------p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~ 69 (344) |+|-+-..+-++. +.......++..++... +..++...+++.|+....+. +-+.|+.++. .. T Consensus 1 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~V~~ci~~ia~~-ia~lp~~~~~------~~ 73 (409) T protein:vir:96 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNS-MASLPLKMYE------DY 73 (409) T ss_pred CccccchhhhhhHHhhhhhccccccccccccccCccccccchhhHhhhHHHHHHHHHHHHh-hhhCceEEee------cc Confidence 8877644443332 11111111111111100 01112223333343332221 2223332211 00 Q ss_pred hhhhhhhhhcchhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---eeEE Q lcl|Aclame:pro 70 VHHSSPIYVKRNILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---VYWW 145 (344) Q Consensus 70 ~~~~~~i~~k~n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---~~~~ 145 (344) .. .... -..+...+|||+++.. ||+.++.+++++||||++++|+..|++++|+|++|..|++..+.+ .+|. T Consensus 74 ~~----~~~~-l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~ 148 (409) T protein:vir:96 74 KV----VNTE-VSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYS 148 (409) T ss_pred cc----cchh-HHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEE Confidence 00 0000 0113445799999875 567888999999999999999999999999999999998875543 2444 Q ss_pred E-cCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHH Q lcl|Aclame:pro 146 V-PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEML 224 (344) Q Consensus 146 ~-~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l 224 (344) + ..++..+.|+++||||+|.+.+.+++||+||+..+.+++.++.+++.+. ++.++..+++++. +++.+++++++++ T Consensus 149 ~~~~~g~~~~~~~~evih~r~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~-~~~~l~~e~~~~~ 225 (409) T protein:vir:96 149 IHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLK-YGSNVSTEKRQQV 225 (409) T ss_pred EEcCCceEEEEccccEEEeCCCCCCCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCceeEEe-cCCCCCHHHHHHH Confidence 4 4567788999999999998878899999999999999999999998874 4455545555554 5678999999999 Q ss_pred HHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHH Q lcl|Aclame:pro 225 RENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKV 304 (344) Q Consensus 225 ~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~ 304 (344) ++.|++.. .|+++++++ ++|++|+|++++++|+||+|++++++++||++|||||++||+. +.++++|+|++ T Consensus 226 ~~~~~~~~--~n~g~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~--~~~~~s~~e~~ 296 (409) T protein:vir:96 226 LEDFKQYY--EENGGILFQ-----EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNAR--SNTNFAKNEEL 296 (409) T ss_pred HHHHHHHh--hcCCCeeec-----CCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC--CCCCcccHHHH Confidence 99998754 367788888 5799999999999999999999999999999999999999974 45789999999 Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 305 AKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 305 ~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) .+.|+++||.|++++||+ ||++|..+..+-.++.++||-- T Consensus 297 ~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~i~fd~~ 337 (409) T protein:vir:96 297 NRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVK 337 (409) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcccccCcceEEeech Confidence 999999999999999985 9999977544434566777654 No 70 >protein:vir:98853 Length: 219 # NCBI annotation: hypothetical protein # Family: family:all:196 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654729;genbank:gi:109302914;genbank:GeneID:4156058 Probab=100.00 E-value=1.4e-57 Score=332.22 Aligned_cols=210 Identities=35% Similarity=0.575 Sum_probs=193.1 Q ss_pred eeccccCceeEEEcC-----CceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceE Q lcl|Aclame:pro 134 TRRGVEEDVYWWVPS-----FNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYI 208 (344) Q Consensus 134 ~~~~~~~~~~~~~~~-----~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gi 208 (344) ||+..+++.+|.+.. +++.++++++||||+|.++|.+++||+||+.+++.++.++.++++|+.+||+||++|+|| T Consensus 1 ~r~~~dg~~~y~~~~~~~~~~g~~~~~~~~eilH~r~~~~~~~~~Glspi~~a~~~i~~~~aa~~~~~~~f~Ng~~p~gi 80 (219) T protein:vir:98 1 MRVCKDGNYKYLMKKSLYDTKSEIYEYNKNDVIFIKLYDPMQQVYGSPDYVGGITSALLNSDATIFRRRYYSNGAHMGFI 80 (219) T ss_pred CceeecCeEEEEEecceecCCceeEEeccccEEEecCCCCCCCcceecHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceE Confidence 888888887776653 377889999999999999999999999999999999999999999999999999999999 Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHh Q lcl|Aclame:pro 209 MYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLM 288 (344) Q Consensus 209 l~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~ll 288 (344) |+++++.++++++++++++|++++|++|+++++|+.++|+++|++|+|++++++|+||+|++++++++||++|||||++| T Consensus 81 l~~~~~~l~~e~~~~~~~~~~~~~g~~n~~~~~l~~~gg~~~G~~~~~~~~~~~d~qfle~rk~~~~eIa~~fgVPp~~l 160 (219) T protein:vir:98 81 LYSTDPDMTEEMEDEIAERIRDSKGVGNFRSMFVNIAGGHPDGLKVIPIGDTGQKDEFANIKNISAQDVLTSHRFPPGLS 160 (219) T ss_pred EEeCCCCCCHHHHHHHHHHHHHhcCcccccceeEecCCCCccceeEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHc Confidence 99998889999999999999989999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhh-Cc--cceeccccccccCC Q lcl|Aclame:pro 289 GGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWI-GQ--EVIRFKNYSLDTDN 343 (344) Q Consensus 289 G~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L-~~--~~irf~~y~l~~d~ 343 (344) |+..+++++|+|+|++.+.|+++||.||+++||+ ||+++ .. ..++|+.+.+.-.| T Consensus 161 G~~~~~~~~~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~~~~~~~~~~~F~~~~~~d~~ 219 (219) T protein:vir:98 161 GIIPVNTAGLGDPLKIREAYQADEVLPLQEIIAESINSDYEIKSALKVNFKQPEKRDKN 219 (219) T ss_pred ccccCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccEEeecCcccccCC Confidence 9988888999999999999999999999999996 98863 22 24678877766666 No 71 >protein:vir:81218 Length: 423 # NCBI annotation: gp3, phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456733;genbank:gi:157168376;interpro:IPR006427;interpro:IPR006944;uniprot:Q9MBK2;genbank:GeneID:5580341 Probab=100.00 E-value=1.4e-56 Score=326.76 Aligned_cols=325 Identities=12% Similarity=0.115 Sum_probs=227.6 Q ss_pred CCCCCCCCCCcchhhccccccceeEE--EcCCceecc----------CcchhhhhhhhhccchhhhccccHHHHHHHHhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAF--TFGEPVPVL----------DRRDILDYVECISNGRWYEPPVSFTGLAKSLRA 68 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f--~~~~p~~~~----------~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 68 (344) |+--++-...++.. ++.+.+..+ .++.+..+. ...+++.|+.+..+ .+-+.|+.++ +. T Consensus 1 Mg~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~-~ia~lp~~~~------~~ 70 (423) T protein:vir:81 1 MGFLQKLGLAPSVV---ATPEPIELVGPIFESLKLSTKNMTVEQIWEDQPHLRTVTTFIAR-NVASLQLQAF------ER 70 (423) T ss_pred CchhHhhccccccc---cCccccccccccccccccccchhhHHHHHHhhhHHHHHHHHHHH-hHhhCceEEE------EE Confidence 55444321111110 111111111 111111111 11122233333222 1223333221 11 Q ss_pred hhh--hhhhhhhcchhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCC--CCceEEEEEeCcceeeccccC--- Q lcl|Aclame:pro 69 AVH--HSSPIYVKRNILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYST--TGKVIRLETSPAKYTRRGVEE--- 140 (344) Q Consensus 69 ~~~--~~~~i~~k~n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~--~G~~~~L~pl~~~~~~~~~~~--- 140 (344) ... ...+.. +........|||+|+.. ||+.++.++++.||||+++.|+. .+.++.|+|+++..+++.... T Consensus 71 ~~dg~~~~~~~--~~~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~rd~~~~~~~~~l~p~~~~~v~~~~~~~~~ 148 (423) T protein:vir:81 71 VEDGGRERVRE--GHLARVCKLANSDMTMYDLLERTMFDLCLYDEFFWLLPGDLGVDTPTLDIRPIPVSWVQRRAYKDGW 148 (423) T ss_pred ecCCceeeecc--chHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcCcceEEEeecccceeeeeeccCCC Confidence 100 000000 01111224799999875 56778889999999999999975 356778899888877654332 Q ss_pred -ceeEEEc----CCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecC-- Q lcl|Aclame:pro 141 -DVYWWVP----SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTD-- 213 (344) Q Consensus 141 -~~~~~~~----~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~-- 213 (344) ..+|.+. .+|..+.++++||||+|.+++++.++|+||+..++.++.++.++++|+.++|+||++|++||+++. T Consensus 149 ~~~~Y~~~~~~~~~g~~~~~~~~evih~r~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gvi~~~~~~ 228 (423) T protein:vir:81 149 GSLDYIIIESGDNDGRSVKVPGERVIHRHGYNPKTMKRGKSPVQSLRDILGEQIEAAIFRAQMWRNGPRPGMVIMRDPES 228 (423) T ss_pred cceEEEEEEecCCCceEEEEcccceEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcc Confidence 2234332 357788999999999999998888899999999999999999999999999999999999998753 Q ss_pred --CCCCHHHHHHHHHHHHHh--hcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhc Q lcl|Aclame:pro 214 --AVQDRNDIEMLRENMVKS--KGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMG 289 (344) Q Consensus 214 --~~~~~e~~~~l~~~~~~~--~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG 289 (344) ..+++|+++++++.|++. .|.+|+|+++|+ +.|++|+|++++++|+||+|++++++++||++|||||++|| T Consensus 229 ~~~~l~~e~~~~~~~~~~~~~~~~~~n~g~~~vl-----~~g~~~~~l~~s~~d~q~~e~~~~~~~eIa~~fgVPp~~lg 303 (423) T protein:vir:81 229 KAGKWDAESRTRFMANLRASFSPKSSDVGGTLLL-----EDGMKAENFHTTSKDEQTVETTKLSLQTVAQVYGINPTMVG 303 (423) T ss_pred cCccCCHHHHHHHHHHHHHHhccccccCCcceec-----CCCceEEeccCChhhHHHHHHHHhhHHHHHHHhCCCHHHhc Confidence 347999999999999875 367899999999 56899999999999999999999999999999999999999 Q ss_pred cccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcccee-ccccccccCCC Q lcl|Aclame:pro 290 GKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIR-FKNYSLDTDNG 344 (344) Q Consensus 290 ~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~ir-f~~y~l~~d~g 344 (344) +. +.++++|+|++.+.|+++||.|+++.||+ ||.+|..+... -.+|.++||-- T Consensus 304 ~~--~~~t~sn~e~~~~~f~~~~L~P~~~~ie~~l~~~L~~~~~~~~~~~~~~fd~~ 358 (423) T protein:vir:81 304 QL--DNANYSNVREFRKALYGDNLGSWIRIIQDVMNLFLLPRVGIDNEKFYFEFNLE 358 (423) T ss_pred CC--CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCccccccCccEEEecch Confidence 85 34689999999999999999999999985 99999775421 13466666533 No 72 >protein:vir:8418 Length: 409 # NCBI annotation: gp13 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID:1260067 Probab=100.00 E-value=1.2e-56 Score=327.21 Aligned_cols=325 Identities=14% Similarity=0.145 Sum_probs=227.4 Q ss_pred CCCCCCCCCCcchhhccccccc----eeEEEcC-C---ceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPK----MEAFTFG-E---PVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHH 72 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~----~~~f~~~-~---p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~ 72 (344) |+.-.+--..+.++........ ...+++. + ++.++...+++.|+....+. .-+.|+.++.-.+.. T Consensus 1 Mgl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~v~~ia~~-iA~lp~~~~~~~~~~------ 73 (409) T protein:vir:84 1 MSLFTRIFSGPSEERTLTKISGIPSPAEDWAMHGDRPGANSAMTLGAFYACVTLLADT-VASLSIDAYRKKDNV------ 73 (409) T ss_pred CchhhhhhcCCCcccccccccccccccchhhccCcccchhhhhccHHHHHHHHHHHHh-hhhCceEEEEecCCc------ Confidence 6655421111111111110000 1111111 1 12233344555555444432 223444322110000 Q ss_pred hhhhhhcchhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEe-eCCCCceEEEEEeCcceeeccccCc---eeEE-- Q lcl|Aclame:pro 73 SSPIYVKRNILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKR-YSTTGKVIRLETSPAKYTRRGVEED---VYWW-- 145 (344) Q Consensus 73 ~~~i~~k~n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~-r~~~G~~~~L~pl~~~~~~~~~~~~---~~~~-- 145 (344) ........ -+....|||++++. ||+.++.+++++||+|+++. |+..|+|++|+|++|.+|++....+ .++. T Consensus 74 -~~~~~~l~-~lL~~~PN~~~t~~~f~~~l~~~l~l~Gn~~~~i~~~~~~g~~~~L~~l~p~~v~v~~~~~~~~~~~~~~ 151 (409) T protein:vir:84 74 -RIPVSPAP-KLLESTPYPGLTWFDWLWMLMESLAVTGNAFGYISARDEANRPTAIMPIHPDCIHVTDAKDEDGDWIEPV 151 (409) T ss_pred -ccccchHH-HHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEECCCCceEEEEEEcCceeEEEEcCCCcceEEEEE Confidence 00000001 12235799999875 56778889999999999885 7889999999999999988754322 2222 Q ss_pred EcCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHH Q lcl|Aclame:pro 146 VPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLR 225 (344) Q Consensus 146 ~~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~ 225 (344) +..+| ..|+++||||+|.+++.+.+||+||+..+..++.++.++++|+.++|+||++|+|||+++ +.+++|+.++++ T Consensus 152 ~~~~g--~~~~~~dvih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~-~~l~~e~~~~~~ 228 (409) T protein:vir:84 152 YRIDG--KVVPNHRIMHIKRYPVAGCALGMSPIEKAASAIGLGLAAERYGLRWFRDSANPSGILSSD-ADLTPDQVKQTQ 228 (409) T ss_pred ecCCc--eEEchhhEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecC-CCCCHHHHHHHH Confidence 22334 468999999999998887789999999999999999999999999999999999999976 578999999999 Q ss_pred HHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHH Q lcl|Aclame:pro 226 ENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVA 305 (344) Q Consensus 226 ~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~ 305 (344) +.|.+. ..|+++++|+ ++|++|++++.+++|+||+|.+++++++||++|||||++||+...++.+++|+|++. T Consensus 229 ~~~~~~--~~n~g~~~vl-----~~g~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~e~~~ 301 (409) T protein:vir:84 229 KQWIQS--HHNRRLPAVM-----SAGIKWQSVSITPNESQFLETRSFQRSEIAMWFRIPPHMIGDVEKSTSWGTGIEEQG 301 (409) T ss_pred HHHHHH--hccCCCeeec-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccchHHHHH Confidence 999654 3578889888 568999999999999999999999999999999999999999877777789999999 Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhCcc-ceeccccccccC--------------CC Q lcl|Aclame:pro 306 KVFVRNELIPLQDRIRE-INGWIGQE-VIRFKNYSLDTD--------------NG 344 (344) Q Consensus 306 ~~f~~~~l~P~~~~ie~-ln~~L~~~-~irf~~y~l~~d--------------~g 344 (344) +.|+++||.|+++.||+ ||++|... .|+|+--.|... .| T Consensus 302 ~~f~~~~l~P~~~~ie~~l~~~L~~g~~i~fd~~~l~~~d~~~~~~~~~~~~~~G 356 (409) T protein:vir:84 302 INFVRHTLLPWLRCIEQALDTFLPRGQFVKFNVDGLMRGDVTARFTAYQMGLQNG 356 (409) T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCeEEEechhhhccCHHHHHHHHHHHHhCC Confidence 99999999999999986 99988432 133322222111 11 No 73 >protein:vir:2683 Length: 412 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075502;genbank:gi:12719431;genbank:GeneID:920150 Probab=100.00 E-value=6.3e-56 Score=323.23 Aligned_cols=324 Identities=12% Similarity=0.133 Sum_probs=224.4 Q ss_pred CCCCCC---CCCCcc-hhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHH---HHHHHhhhhhhh Q lcl|Aclame:pro 1 MSKKKG---KTPQPA-AKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTG---LAKSLRAAVHHS 73 (344) Q Consensus 1 m~~~~~---~~~~~~-~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---l~~~~~~~~~~~ 73 (344) |+=-++ .++... ..+..-..+....+.|. ++.+. ++..+ ....+...|..... ++......+.+- T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~v-~~~~a~~~~~v~~~i~~ia~~iA~lp~~~ 72 (412) T protein:vir:26 1 MNVIAKENIVTRIKKKLIDNWIDQSTSKLYDFS---PWKNR----SFWGV-INNTLETNETIFSAITKLSNSMASLPLKM 72 (412) T ss_pred CccchhhhhhhhhhhhHhhhhhccccccccccc---ccCCc----ccccc-chhhhhccHHHHHHHHHHHHhHhhCceeE Confidence 543322 111111 00011000001111121 12111 01001 11112222222111 222222111110 Q ss_pred -hhhhhcch--hhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---eeEEE Q lcl|Aclame:pro 74 -SPIYVKRN--ILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---VYWWV 146 (344) Q Consensus 74 -~~i~~k~n--~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---~~~~~ 146 (344) .--..... ..+...+|||++++. ||+.++.+++++||||++++|+..|++++|+|++|..|++..+.+ .+|.+ T Consensus 73 ~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~~ 152 (412) T protein:vir:26 73 YEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSI 152 (412) T ss_pred eeccccccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEE Confidence 00000001 112345799999875 567888999999999999999999999999999999998876543 23444 Q ss_pred -cCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHH Q lcl|Aclame:pro 147 -PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLR 225 (344) Q Consensus 147 -~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~ 225 (344) ..++..+.|+++||||+|.+++.+++||+||+.++++++.++.++++++ ++.++..++++++ +++.++++++++++ T Consensus 153 ~~~~g~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~a~~~~~--~~~~~~~~~~i~~-~~~~l~~e~~~~~~ 229 (412) T protein:vir:26 153 HAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLK-YGSNVGKEKRQQVL 229 (412) T ss_pred EcCCceEEEEccccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCceEEe-cCCCCCHHHHHHHH Confidence 3457788899999999999888899999999999999999999999984 6666666676765 56789999999999 Q ss_pred HHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHH Q lcl|Aclame:pro 226 ENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVA 305 (344) Q Consensus 226 ~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~ 305 (344) +.|++..+ |.++++|+ ++|++|+|++++++|+||+|++++++++||++|||||.+||+. ++++++|+|++. T Consensus 230 ~~~~~~~~--~~g~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVPp~~lg~~--~~~~~sn~e~~~ 300 (412) T protein:vir:26 230 EDFKQYYE--ENGGILFQ-----EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNAR--SNTNFAKNEELN 300 (412) T ss_pred HHHHHHhh--cCCCeeec-----CCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC--CCCCcccHHHHH Confidence 99987543 66788888 5789999999999999999999999999999999999999974 457899999999 Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 306 KVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 306 ~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +.|+++||.|++.+||+ ||.+|..+..+-..+.++||-- T Consensus 301 ~~f~~~~l~P~~~~ie~~ln~kLl~~~~~~~~~~~~fd~~ 340 (412) T protein:vir:26 301 RFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVK 340 (412) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcccccCcceEEeech Confidence 99999999999999985 9999977654444566666644 No 74 >protein:vir:4854 Length: 386 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049394;genbank:gi:9632422;genbank:GeneID:1258515 Probab=100.00 E-value=2.6e-55 Score=319.80 Aligned_cols=316 Identities=10% Similarity=0.098 Sum_probs=227.7 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchh------hhccccHHHHHHHHhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRW------YEPPVSFTGLAKSLRAAVHHSS 74 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~------~~~p~~~~~l~~~~~~~~~~~~ 74 (344) |+--++.+..++.... .....+++.++.. ...+..+.+ -..|.....+..+.+.-+. - T Consensus 1 M~~f~~~~~~~~~~~~----~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~--~ 64 (386) T protein:vir:48 1 MPIFNITNLATESPPI----SQGGFFDITDPDF----------LSTLNGSEWVSAESALRNSDLFSIINQLSNDLAT--V 64 (386) T ss_pred Cccccccccccccccc----ccccccccccchh----------cccccCCceechhhhhcchHHHHHHHHHHHhhcc--C Confidence 8776654443332111 1112233333210 011111111 1122211221111111111 1 Q ss_pred hhhh-cchhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---eeEEEcCC Q lcl|Aclame:pro 75 PIYV-KRNILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---VYWWVPSF 149 (344) Q Consensus 75 ~i~~-k~n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---~~~~~~~~ 149 (344) ++.. ++.......+|||++++. |++.++.+++++||||++++|+..|++++|+|+++..|++..+.+ .+|.+... T Consensus 65 p~~~~~~~~~~l~~~pN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~ 144 (386) T protein:vir:48 65 KLTASRKQLQGIIDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNKDGIYYNITFD 144 (386) T ss_pred ceeeccchhHHHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEecCceeEEEEcCCCceEEEEEEec Confidence 1111 223334456899999875 567788899999999999999999999999999999998765532 35555432 Q ss_pred ----ceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHH Q lcl|Aclame:pro 150 ----NEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLR 225 (344) Q Consensus 150 ----~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~ 225 (344) +....|+++||||+|.+++++++||+||+..+..++.++.++++|+.++|+||++|++||++++ .+++++.++++ T Consensus 145 ~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~ii~~~~-~~~~e~~~~~~ 223 (386) T protein:vir:48 145 DPRIPPKQHVPQGDVLHFKLLSVDGGLTSVSPLMALSRELNIQKASDKLTLNSLKNALNANGILKIKG-GGLLDFKTKLS 223 (386) T ss_pred CccccceeEecCccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCC-CCCHHHHHHHH Confidence 4567899999999999998888999999999999999999999999999999999999999764 67889999999 Q ss_pred HHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHH Q lcl|Aclame:pro 226 ENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVA 305 (344) Q Consensus 226 ~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~ 305 (344) +.|.. +..|+++++|+ +.|++|+|++.+++|+||+|++++++++||++|||||.++|+ .++++|++++. T Consensus 224 ~~~~~--~~~n~g~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~----~~~~~~~e~~~ 292 (386) T protein:vir:48 224 RSRQA--MKQMQGGPLVL-----DDLEEFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPENVVGG----QGDQQSSLEMS 292 (386) T ss_pred HHHHH--hhcCCCCceec-----CCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCC----CCCcccHHHHH Confidence 88864 45688999998 568999999999999999999999999999999999999985 24678999999 Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhCcccee-------ccccccccC------CC Q lcl|Aclame:pro 306 KVFVRNELIPLQDRIRE-INGWIGQEVIR-------FKNYSLDTD------NG 344 (344) Q Consensus 306 ~~f~~~~l~P~~~~ie~-ln~~L~~~~ir-------f~~y~l~~d------~g 344 (344) +.|++.+|.|++..||+ ||.+|+.++.. .+.+.+.++ .| T Consensus 293 ~~~~~~~l~P~~~~ie~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~l~~~g 345 (386) T protein:vir:48 293 LDLYNKAVSRYLRPFLSELSQKLSCDVDADILPAVDPTGSNSVSRINSMVKSG 345 (386) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhhcchhhhhccChHHHHHHHHHHHhCC Confidence 99999999999999985 99999875411 111111111 11 No 75 >protein:vir:7407 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Probab=100.00 E-value=1.2e-55 Score=321.70 Aligned_cols=324 Identities=10% Similarity=0.033 Sum_probs=214.6 Q ss_pred CCCCCCCCCCcc-hhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhh-h Q lcl|Aclame:pro 1 MSKKKGKTPQPA-AKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIY-V 78 (344) Q Consensus 1 m~~~~~~~~~~~-~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~-~ 78 (344) |+-.+..++... ..+.+.. ..+..+....+.+... .+-.+.+....+...|.....+..+.+.-+ +.++. . T Consensus 3 m~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~g~~v~~~~al~~~~v~~~v~~ia~~ia--~lp~~~~ 75 (392) T protein:vir:74 3 LPILNFINQTNDPPEAGSVQ----SYFPDGNDAQIMESLL-GDNNEWVSARAALRNSDLFSIILQLSSDLA--IVKINAE 75 (392) T ss_pred chhhhhhhcccCcccccccc----cccccCchhhhhhhcc-CCCCcccchhhhhcchHHHHHHHHHHHhhc--cCceeec Confidence 444322222211 1111110 1111111111110000 000000011111122221111111111111 11111 1 Q ss_pred cchhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccC--c-eeEEEcCC----c Q lcl|Aclame:pro 79 KRNILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEE--D-VYWWVPSF----N 150 (344) Q Consensus 79 k~n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~--~-~~~~~~~~----~ 150 (344) ++........|||+++.. ||+.++.+++++||||++++|+..|++++|+|++|.+|++..+. + .+|.+... + T Consensus 76 ~~~~~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~~~~~~y~~~~~~~~~~ 155 (392) T protein:vir:74 76 KKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIE 155 (392) T ss_pred cchhhhhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEecCCccc Confidence 222333445799999875 56778889999999999999999999999999999999876543 2 34555432 3 Q ss_pred eEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCC-CCHHHHHHHHHHHH Q lcl|Aclame:pro 151 EPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAV-QDRNDIEMLRENMV 229 (344) Q Consensus 151 ~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~-~~~e~~~~l~~~~~ 229 (344) ....++++||||+|.+++++.+||+||+.++.+++.++.++++|+.++|+||++|++||++++.. .+++++++++ + T Consensus 156 ~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~~~~~~~~~~~~~~~---~ 232 (392) T protein:vir:74 156 PILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRS---R 232 (392) T ss_pred eeEEEcCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchHHHHHHHH---H Confidence 46789999999999998877799999999999999999999999999999999999999987643 3344443333 3 Q ss_pred HhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHH Q lcl|Aclame:pro 230 KSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFV 309 (344) Q Consensus 230 ~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~ 309 (344) ++.|..|+++++|+ ++|++|+|++.+++|+||+|++++++++||++|||||++||+..+ + .+.+++.++|+ T Consensus 233 ~~~~~~n~g~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~---~-~~~~e~~~~~~ 303 (392) T protein:vir:74 233 SFMKRSRSGGPVVL-----DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGD---Q-QSSIQQISGMY 303 (392) T ss_pred HHhccccCCCeeec-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC---c-ccHHHHHHHHH Confidence 45678899999998 568999999999999999999999999999999999999997432 2 24456788999 Q ss_pred HHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 310 RNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 310 ~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +++|.|+++.|++ +|.+|..++ +|+...+...++ T Consensus 304 ~~~l~p~~~~ie~~l~~~l~~~~-~~~~~~~~~~d~ 338 (392) T protein:vir:74 304 ASALNRYLRPAISELEYKLSDHI-SVNMRPAIDPLG 338 (392) T ss_pred HHHHHHHHHHHHHHHHHhccchh-cccchhhhcCCH Confidence 9999999999986 999998763 444322222222 No 76 >protein:vir:100187 Length: 385 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025029;genbank:gi:48697262;genbank:GeneID:2948285 Probab=100.00 E-value=2.4e-55 Score=320.07 Aligned_cols=315 Identities=12% Similarity=0.123 Sum_probs=223.5 Q ss_pred CCCCCCC--CCCcchhhccccccc-eeEEEcCCceecc------CcchhhhhhhhhccchhhhccccHHHHHHHHhhhhh Q lcl|Aclame:pro 1 MSKKKGK--TPQPAAKTMTASAPK-MEAFTFGEPVPVL------DRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVH 71 (344) Q Consensus 1 m~~~~~~--~~~~~~~~~~~~~~~-~~~f~~~~p~~~~------~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ 71 (344) |+...++ .+....+...+..+. ...+..+.+.+.. ...+++.|+....+. .-+.|+.++ T Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~-ia~~p~~v~----------- 68 (385) T protein:vir:10 1 MGLLTPRNFNKRKAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASD-VASAHFKTE----------- 68 (385) T ss_pred CccccchhcccccccccccccchhhhhhhccccCccccCHHHhhccHHHHHHHHHHHHH-HhhCceeee----------- Confidence 5533211 111111111111110 1112222211111 112222222222111 112222111 Q ss_pred hhhhhhhcchhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCce-eEE--Ec Q lcl|Aclame:pro 72 HSSPIYVKRNILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV-YWW--VP 147 (344) Q Consensus 72 ~~~~i~~k~n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~-~~~--~~ 147 (344) ++...-..-+|||+++.. ||+.++.+++++||||++++|+ +.+++|+++..++...+.+. +|. .. T Consensus 69 -------~~~~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~r~----~~~~~p~~~~~v~~~~~~~~~~~~~~~~ 137 (385) T protein:vir:10 69 -------NTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ----NLEHIPNSDVQINYLPGNMGIVYTVLES 137 (385) T ss_pred -------ccchhhhhhcCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcC----ceeEeecCCceEEEEEcCCceEEEEEEc Confidence 111111223799999875 5677888999999999999876 56799999998887666553 333 34 Q ss_pred CCceEEEEecccEEEecCCCC--CCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHH Q lcl|Aclame:pro 148 SFNEPTAFAPGSVFHLLEPDI--NQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLR 225 (344) Q Consensus 148 ~~~~~~~~~~~eIih~~~~~~--~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~ 225 (344) .++..+.|+++||||+|.+++ .+++||+||+.+++.++.++.++++|+.++|+||++|++||++++...+++++++++ T Consensus 138 ~~~~~~~~~~~eiihik~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~gil~~~~~~~~~e~~~~~~ 217 (385) T protein:vir:10 138 NDRPQMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAR 217 (385) T ss_pred CCceEEEEccccEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHH Confidence 566788999999999997654 568899999999999999999999999999999999999999987777899999999 Q ss_pred HHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHH-HHHHhhHHHHHHHhcCChHHhccccccccccccHHHH Q lcl|Aclame:pro 226 ENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFF-NIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKV 304 (344) Q Consensus 226 ~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~-e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~ 304 (344) +.|++..+++|+++++++ ++|++|+|++.++.|+||+ |++++++++||++|||||++||+...++++++|+|++ T Consensus 218 ~~~~~~~~~~n~~~~~vl-----~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~sn~eq~ 292 (385) T protein:vir:10 218 EEFEKANTGDNSGRLMVL-----PDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQI 292 (385) T ss_pred HHHHHHhCccccCCcccc-----CCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCcccccHHHH Confidence 999988888999999998 5689999999999999986 9999999999999999999999876677889999977 Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 305 AKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 305 ~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) ...| ..||.|+++.|++ +|.+|..+.++|+.-.|.-.+- T Consensus 293 ~~~~-~~~l~P~~~~ie~~l~~~l~~~~~~f~~~~ll~~d~ 332 (385) T protein:vir:10 293 KATY-LANLNSYVNPIVDELRLKMNAPDLELDIKDMLDVDD 332 (385) T ss_pred HHHH-HHHHHHHHHHHHHHHHHhhCCceEEeechhhhccCH Confidence 5555 5699999999985 9999977656665333221111 No 77 >protein:vir:4828 Length: 382 # NCBI annotation: ORF24 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID:1262630 Probab=100.00 E-value=1.1e-54 Score=316.39 Aligned_cols=311 Identities=10% Similarity=0.083 Sum_probs=221.8 Q ss_pred CCCCCCCCCCcchhhccccccce--eEE--EcCCcee-----ccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKM--EAF--TFGEPVP-----VLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVH 71 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~--~~f--~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ 71 (344) |+-.++....++.. ... ...+ ..| ++...+. .+...+++.|+.+..+. .-+.|+.+ T Consensus 1 Mg~f~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~v~~~~~l~~~~v~~~i~~ia~~-ia~~~~~~------------ 65 (382) T protein:vir:48 1 MPIFNLATESPPDN-QGG-FFDVVDSDFLASLKGNEWVSAETALRNSDLFSIINQLSND-LATVKLIT------------ 65 (382) T ss_pred CccccccccCCccc-ccc-cccchhhhccccccCCcccchHhhhccHHHHHHHHHHHHh-hccCceee------------ Confidence 87766554332211 100 0000 000 0000001 11112222222222111 11112111 Q ss_pred hhhhhhhcchhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccC--c-eeEEEc Q lcl|Aclame:pro 72 HSSPIYVKRNILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEE--D-VYWWVP 147 (344) Q Consensus 72 ~~~~i~~k~n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~--~-~~~~~~ 147 (344) .+........+|||++++. |++.++.+++++||||++++|+..|++++|+|++|.+|++..+. + .+|.+. T Consensus 66 ------~~~~~~~L~~~PN~~~t~~~f~~~l~~~l~l~Gna~~~i~rd~~G~~~~l~~i~~~~v~v~~~~~~~~~~y~~~ 139 (382) T protein:vir:48 66 ------SRKKLQGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNKDGIYYNIT 139 (382) T ss_pred ------ecchhhhhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCCeEEEEEE Confidence 1112223456899998875 56778889999999999999999999999999999999876543 2 355554 Q ss_pred CC----ceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHH Q lcl|Aclame:pro 148 SF----NEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEM 223 (344) Q Consensus 148 ~~----~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~ 223 (344) .+ +..+.|+++||||+|.+++.+.++|+||+.++..++.+..++++|+.++|+||++|++||++++ .+++++.++ T Consensus 140 ~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~-~~~~e~~~~ 218 (382) T protein:vir:48 140 FDDPRIPPKQHVPQNDVLHFRLLSVDGGMTSVSPLMALSRELDIQKASGNLTINSLKNALNANGILKIKG-GGLLDFKTK 218 (382) T ss_pred ecCccccceeEEcCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCC-CCChHHHHH Confidence 32 4567899999999999998888999999999999999999999999999999999999999875 578888888 Q ss_pred HHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHH Q lcl|Aclame:pro 224 LRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEK 303 (344) Q Consensus 224 l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~ 303 (344) +++.|.+ +..|+++++|+ ++|++|+|++.+++|+||+|++++++++||++|||||.+||+.. +.++.++ T Consensus 219 ~~~~~~~--~~~n~g~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVp~~~lg~~~----~~~~~~~ 287 (382) T protein:vir:48 219 LSRSRQA--MKQMQGGPLVL-----DDLEDFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPDNVVGGQG----DQQSSLE 287 (382) T ss_pred HHHHHHh--hccCCCCeeEc-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC----CcccHHH Confidence 8888865 45688999998 56899999999999999999999999999999999999999743 2346788 Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhCcccee-------ccccccccC------CC Q lcl|Aclame:pro 304 VAKVFVRNELIPLQDRIRE-INGWIGQEVIR-------FKNYSLDTD------NG 344 (344) Q Consensus 304 ~~~~f~~~~l~P~~~~ie~-ln~~L~~~~ir-------f~~y~l~~d------~g 344 (344) +.+.|++.+|.|+++.|++ +|.+|..+... ++.+.++++ .| T Consensus 288 ~~~~~~~~~l~p~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 342 (382) T protein:vir:48 288 MSSDLYSKAVSRYLRPFLSELSQKLSCDVDADIFPAVDPTGSNYISRINSLVKTG 342 (382) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhccchhHHHHHHHHHhhcC Confidence 8999999999999999975 99999776422 122222221 11 No 78 >protein:vir:1023 Length: 392 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076677;genbank:gi:13095786;genbank:GeneID:920364 Probab=100.00 E-value=1e-54 Score=316.53 Aligned_cols=323 Identities=10% Similarity=0.045 Sum_probs=214.5 Q ss_pred CCCCCCCCC-CcchhhccccccceeEEEcCCceeccCcchhhhh-hhhhccchhhhccccHHHHHHHHhhhhhhhhhhh- Q lcl|Aclame:pro 1 MSKKKGKTP-QPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDY-VECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIY- 77 (344) Q Consensus 1 m~~~~~~~~-~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~- 77 (344) |+-.+...+ .++.+....+ ..|..+....+.+. +.+. ...+....+...|.....+..+.+..+ +..+. T Consensus 3 m~~f~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia--~lp~~~ 74 (392) T protein:vir:10 3 LPILNFINQTNDPPEVGSVQ----SYFPDGNDAQIMES--LLGDNNEWVSARAALRNSDLFSIILQLSSDLA--IVKINA 74 (392) T ss_pred chhhhhhhcccccccccccc----cccccCchhhhhhh--hcCCCCceechHHhhccHHHHHHHHHHHHhhc--cCceee Confidence 554332211 1111111111 12222222111110 0000 000000111111221111111111111 11111 Q ss_pred hcchhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---eeEEEcC----C Q lcl|Aclame:pro 78 VKRNILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---VYWWVPS----F 149 (344) Q Consensus 78 ~k~n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---~~~~~~~----~ 149 (344) .++.......+|||+++.. ||+.++.+++++||||++++|+..|++++|+|+++.+|++..+.+ .+|.+.. + T Consensus 75 ~~~~~~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~~~~~~~~~y~~~~~~~~~ 154 (392) T protein:vir:10 75 EKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKI 154 (392) T ss_pred ccchhhhHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEecCccc Confidence 1222233445899999875 567788899999999999999999999999999999998765432 3455543 2 Q ss_pred ceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCC-CCHHHHHHHHHHH Q lcl|Aclame:pro 150 NEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAV-QDRNDIEMLRENM 228 (344) Q Consensus 150 ~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~-~~~e~~~~l~~~~ 228 (344) +....|+++||||+|.+++.+.+||+||+.++.+++.++.++++|+.++|+||++|+|||++++.. .+++++++++ T Consensus 155 ~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~~--- 231 (392) T protein:vir:10 155 EPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRS--- 231 (392) T ss_pred ceeEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchHHHHHHHH--- Confidence 346789999999999998877799999999999999999999999999999999999999987643 3344433333 Q ss_pred HHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHH Q lcl|Aclame:pro 229 VKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVF 308 (344) Q Consensus 229 ~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f 308 (344) +++.|..|+++++|+ +.|++|+|++.+++|+||+|++++++++||++|||||++||+..+ ..+.+++.+.| T Consensus 232 ~~~~~~~~~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~----~~~~~~~~~~f 302 (392) T protein:vir:10 232 RSFMKRSRSGGPVVL-----DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGD----QQSSIQQISGM 302 (392) T ss_pred HHHhccccCCCeeec-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC----cccHHHHHHHH Confidence 345677899999998 568999999999999999999999999999999999999997432 23446678899 Q ss_pred HHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 309 VRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 309 ~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +++||.|+++.|++ +|.+|..++ .|+...+...++ T Consensus 303 ~~~~l~P~~~~ie~~l~~~L~~~~-~~d~~~~~~~d~ 338 (392) T protein:vir:10 303 YASALNRYLRPAISELEYKLSDHI-SVNMRPAIDPLG 338 (392) T ss_pred HHHHHHHHHHHHHHHHHHhccccc-cccchhhhccCH Confidence 99999999999985 999998763 343221111111 No 79 >protein:vir:3989 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116497;genbank:gi:14251130;genbank:GeneID:921299 Probab=100.00 E-value=1e-54 Score=316.53 Aligned_cols=323 Identities=10% Similarity=0.045 Sum_probs=214.5 Q ss_pred CCCCCCCCC-CcchhhccccccceeEEEcCCceeccCcchhhhh-hhhhccchhhhccccHHHHHHHHhhhhhhhhhhh- Q lcl|Aclame:pro 1 MSKKKGKTP-QPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDY-VECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIY- 77 (344) Q Consensus 1 m~~~~~~~~-~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~- 77 (344) |+-.+...+ .++.+....+ ..|..+....+.+. +.+. ...+....+...|.....+..+.+..+ +..+. T Consensus 3 m~~f~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia--~lp~~~ 74 (392) T protein:vir:39 3 LPILNFINQTNDPPEVGSVQ----SYFPDGNDAQIMES--LLGDNNEWVSARAALRNSDLFSIILQLSSDLA--IVKINA 74 (392) T ss_pred chhhhhhhcccccccccccc----cccccCchhhhhhh--hcCCCCceechHHhhccHHHHHHHHHHHHhhc--cCceee Confidence 554332211 1111111111 12222222111110 0000 000000111111221111111111111 11111 Q ss_pred hcchhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---eeEEEcC----C Q lcl|Aclame:pro 78 VKRNILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---VYWWVPS----F 149 (344) Q Consensus 78 ~k~n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---~~~~~~~----~ 149 (344) .++.......+|||+++.. ||+.++.+++++||||++++|+..|++++|+|+++.+|++..+.+ .+|.+.. + T Consensus 75 ~~~~~~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~~~~~~~~~y~~~~~~~~~ 154 (392) T protein:vir:39 75 EKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKI 154 (392) T ss_pred ccchhhhHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEecCccc Confidence 1222233445899999875 567788899999999999999999999999999999998765432 3455543 2 Q ss_pred ceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCC-CCHHHHHHHHHHH Q lcl|Aclame:pro 150 NEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAV-QDRNDIEMLRENM 228 (344) Q Consensus 150 ~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~-~~~e~~~~l~~~~ 228 (344) +....|+++||||+|.+++.+.+||+||+.++.+++.++.++++|+.++|+||++|+|||++++.. .+++++++++ T Consensus 155 ~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~~--- 231 (392) T protein:vir:39 155 EPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRS--- 231 (392) T ss_pred ceeEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchHHHHHHHH--- Confidence 346789999999999998877799999999999999999999999999999999999999987643 3344433333 Q ss_pred HHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHH Q lcl|Aclame:pro 229 VKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVF 308 (344) Q Consensus 229 ~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f 308 (344) +++.|..|+++++|+ +.|++|+|++.+++|+||+|++++++++||++|||||++||+..+ ..+.+++.+.| T Consensus 232 ~~~~~~~~~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~----~~~~~~~~~~f 302 (392) T protein:vir:39 232 RSFMKRSRSGGPVVL-----DDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGD----QQSSIQQISGM 302 (392) T ss_pred HHHhccccCCCeeec-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC----cccHHHHHHHH Confidence 345677899999998 568999999999999999999999999999999999999997432 23446678899 Q ss_pred HHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 309 VRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 309 ~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +++||.|+++.|++ +|.+|..++ .|+...+...++ T Consensus 303 ~~~~l~P~~~~ie~~l~~~L~~~~-~~d~~~~~~~d~ 338 (392) T protein:vir:39 303 YASALNRYLRPAISELEYKLSDHI-SVNMRPAIDPLG 338 (392) T ss_pred HHHHHHHHHHHHHHHHHHhccccc-cccchhhhccCH Confidence 99999999999985 999998763 343221111111 No 80 >protein:vir:3843 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050149;swissprot:trembl:q9t1f8;genbank:gi:9633041;uniprot:Q9T1F8;genbank:GeneID:1262206 Probab=100.00 E-value=2e-54 Score=314.94 Aligned_cols=312 Identities=12% Similarity=0.098 Sum_probs=227.8 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCC-c-----eeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGE-P-----VPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSS 74 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-p-----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~ 74 (344) |+.-++.++.+......... -...|..++ . ..++...+++.|+....+. .-..|+ T Consensus 1 M~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~al~~~~V~~~v~~ia~~-ia~~p~----------------- 61 (397) T protein:vir:38 1 MPLLKLNKSHSQGFSLNDPD-WVNFLTGGEAQKYVSADTALKNSDIFSLIMQLSGD-LAMVRY----------------- 61 (397) T ss_pred CcchhhhhcccCcccCCchh-hhhhhcCCcCCceechHHhhccHHHHHHHHHHHHH-HhhCcc----------------- Confidence 88876544333222211110 001111111 1 1112233333333332221 111221 Q ss_pred hhhhcc-hhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---eeEEEc-- Q lcl|Aclame:pro 75 PIYVKR-NILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---VYWWVP-- 147 (344) Q Consensus 75 ~i~~k~-n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---~~~~~~-- 147 (344) ..++ ........|||++++. ||+.++.+++++||||++++|+..|++++|+|++|..|++..+.+ .+|.+. T Consensus 62 --~~~~~~~~~l~~~PN~~~s~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~l~~~~v~i~~~~~~~~~~y~~~~~ 139 (397) T protein:vir:38 62 --TSESDRSQSIISNPSVTANGYSFWQGMFAQLLLDGNCYAYRHKNTNGVDLSWEYLRPSQVQPMLLQDGSGLIYNINFD 139 (397) T ss_pred --cccccHHHHHHhcCCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEec Confidence 1111 1223455899998875 567888899999999999999999999999999999998765432 345443 Q ss_pred --CCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHH Q lcl|Aclame:pro 148 --SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLR 225 (344) Q Consensus 148 --~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~ 225 (344) .++..+.|+++||||++.+++.+.+||+||+.++..++.+..++++++.++|+||++|+++|+++. .+++++.++++ T Consensus 140 ~~~~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~-~~~~e~~~~~~ 218 (397) T protein:vir:38 140 EPAIGYMENVPAADVIHIRLLSKNGGKTGISPLSALINEQQIKDASNELTLKALKQSVTASAVLTIQK-GGLLDAETRIA 218 (397) T ss_pred cccccceeEecCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCC-CCCHHHHHHHH Confidence 245668899999999999998888999999999999999999999999999999999999999864 57889999999 Q ss_pred HHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHH Q lcl|Aclame:pro 226 ENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVA 305 (344) Q Consensus 226 ~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~ 305 (344) +.|+...++.|+++++|+ +.|++|+|++.+++|+||+|.+++++++||++|||||.+||+..+ +++|++++ T Consensus 219 ~~~~~~~~~~n~~~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~afgVp~~~lg~~~~---~~~~~e~~- 289 (397) T protein:vir:38 219 RSKEISKQIHNSDGPVVI-----DALEDYKPLEVKGNIASLLNQVDWTRDQIAKVYGVPDSYLNGQGD---QQSSITQI- 289 (397) T ss_pred HHHHHHhcccccCCceec-----CCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC---cccHHHHH- Confidence 999988888999999998 568999999999999999999999999999999999999997532 34677755 Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhCccceecc-ccccccCCC Q lcl|Aclame:pro 306 KVFVRNELIPLQDRIRE-INGWIGQEVIRFK-NYSLDTDNG 344 (344) Q Consensus 306 ~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~-~y~l~~d~g 344 (344) ..|++.||.|++..||+ ||.+|..+. .|+ .+.++.|.- T Consensus 290 ~~~~~~~l~P~~~~ie~~ln~~l~~~~-~~~~~~~~~~d~~ 329 (397) T protein:vir:38 290 SGQYAKSLNRYVQAIVGELNDKLHANI-SANIRFAIDAMGD 329 (397) T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChh-cccccccccCCHH Confidence 56888999999999985 999998764 221 111211111 No 81 >protein:vir:9359 Length: 348 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803337;genbank:gi:29028648;genbank:GeneID:1258089 Probab=100.00 E-value=2.3e-54 Score=314.60 Aligned_cols=270 Identities=11% Similarity=0.132 Sum_probs=214.7 Q ss_pred hhhccccHHHHHHHHhhhhhhhhhhhhcchhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeC Q lcl|Aclame:pro 52 WYEPPVSFTGLAKSLRAAVHHSSPIYVKRNILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSP 130 (344) Q Consensus 52 ~~~~p~~~~~l~~~~~~~~~~~~~i~~k~n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~ 130 (344) +-+.|+.++. ......+.+ .-+...+|||+++.. ||+.++.+++++||||++++|+..|+|++|+|++ T Consensus 1 ia~lp~~~~~------~~~~~~~~l-----~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~l~ 69 (348) T protein:vir:93 1 MASLPLKMYE------DYKVVNTEV-----SDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLN 69 (348) T ss_pred CcccceEeEe------cCcCcccHH-----HHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEc Confidence 3344554321 111101111 122335799999875 5677888999999999999999999999999999 Q ss_pred cceeeccccCc---eeEEE-cCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCc Q lcl|Aclame:pro 131 AKYTRRGVEED---VYWWV-PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAG 206 (344) Q Consensus 131 ~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~ 206 (344) |..|++..+.+ .+|.+ ..++..+.|+++||||+|.+++.+++||+||+.++..++.++.+++.++ ++.++..++ T Consensus 70 ~~~v~~~~~~~~~~~~y~~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~--~~~~~~~~~ 147 (348) T protein:vir:93 70 PDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDS 147 (348) T ss_pred CCceEEEEeCCCcEEEEEEEcCCCeEEEEccccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHH--HHhcCCCce Confidence 99998765543 23433 4557788999999999999888899999999999999999999999886 333444455 Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChH Q lcl|Aclame:pro 207 YIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQ 286 (344) Q Consensus 207 gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~ 286 (344) +++. .++.+++|++++++++|++.. +|+++++++ +.|++|+|++.+++|+||+|++++++++||++|||||. T Consensus 148 ~i~~-~~~~l~~e~~~~~~~~~~~~~--~n~~~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~ 219 (348) T protein:vir:93 148 FMLK-YGSNVSTEKRQQVLEDFKQYY--EENGGILFQ-----EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSI 219 (348) T ss_pred eEEe-cCCCCCHHHHHHHHHHHHHHh--hcCCCeeec-----CCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHH Confidence 5555 567899999999999998765 367888888 56899999999999999999999999999999999999 Q ss_pred HhccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 287 LMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 287 llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +||+. ++++++|+|++.+.|+++||.|+++.||+ ||.+|..+..+-.+++++||.- T Consensus 220 ~lg~~--~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~l~~~~~~~~g~~i~fd~~ 276 (348) T protein:vir:93 220 FLNAR--SNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVK 276 (348) T ss_pred HhCCC--CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccCcceEEeech Confidence 99964 45789999999999999999999999985 9999977643334566776654 No 82 >protein:vir:100882 Length: 383 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Probab=100.00 E-value=5.6e-54 Score=312.55 Aligned_cols=313 Identities=13% Similarity=0.136 Sum_probs=222.5 Q ss_pred CCCCCC---CCCCcchhhccccccc-eeEEEcCCce------eccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhh Q lcl|Aclame:pro 1 MSKKKG---KTPQPAAKTMTASAPK-MEAFTFGEPV------PVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAV 70 (344) Q Consensus 1 m~~~~~---~~~~~~~~~~~~~~~~-~~~f~~~~p~------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 70 (344) |..-.+ +++.+.... +..... ...+..+.+. .++...+++.|+..+ +......+ T Consensus 1 Mg~~~~~~~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~v~~~i~~i---------------a~~ia~~~ 64 (383) T protein:vir:10 1 MGLLTPKNFSKRNAKNMV-YPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRI---------------ASDVSSAH 64 (383) T ss_pred CCcccccccccccccccc-cccchhhhhhhccCccccccchhHhhcchHHHHHHHHH---------------HHhhccCc Confidence 444322 111111110 110000 1111111111 111112222222221 22111111 Q ss_pred hhhhhhhhc-chhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCce-eE--E Q lcl|Aclame:pro 71 HHSSPIYVK-RNILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV-YW--W 145 (344) Q Consensus 71 ~~~~~i~~k-~n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~-~~--~ 145 (344) +..+ +...-..-.|||+++.. ||+.++.++++.||||++++|+ +++++|+.+.+++...+.+. +| . T Consensus 65 -----~~~~~~~~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~~~----~~~~~p~~~~~v~~~~~~~~~~~~~~ 135 (383) T protein:vir:10 65 -----FKTENTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ----NLEHIPNSDVQINYLPGNMGIVYTVL 135 (383) T ss_pred -----eeecccchhhhhhCCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcC----ceeEeecCcceEEEEEcCCceEEEEE Confidence 1111 11122233799999875 5678889999999999999875 56788998888887665543 33 3 Q ss_pred EcCCceEEEEecccEEEecCCCC--CCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHH Q lcl|Aclame:pro 146 VPSFNEPTAFAPGSVFHLLEPDI--NQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEM 223 (344) Q Consensus 146 ~~~~~~~~~~~~~eIih~~~~~~--~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~ 223 (344) ...++..++|+++||||+|.+++ .+++||+||+.++..++.++.++++++.++|+||++|++||.+++...++++.++ T Consensus 136 ~~~~~~~~~~~~~evih~r~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~~~~e~~~~ 215 (383) T protein:vir:10 136 ESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLES 215 (383) T ss_pred EcCCceEEEEcccceEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHH Confidence 44567788999999999997644 4578999999999999999999999999999999999999999877778999999 Q ss_pred HHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHH-HHHHhhHHHHHHHhcCChHHhccccccccccccHH Q lcl|Aclame:pro 224 LRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFF-NIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIE 302 (344) Q Consensus 224 l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~-e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e 302 (344) +++.|++..+++|+++++|+ ++|++|+|++.+++|+||+ |++++++++||++|||||++||+...++++++|+| T Consensus 216 ~~~~~~~~~~~~n~~~~~vl-----~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~~~sn~e 290 (383) T protein:vir:10 216 AREEFEKANTGDNSGRLMVL-----PDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNID 290 (383) T ss_pred HHHHHHHHhCccccCCcccc-----CCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCCccccHH Confidence 99999988878999999999 5689999999999999985 99999999999999999999998766778899999 Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 303 KVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 303 ~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +++..|. .+|.|+++.||+ ++++|..+.++|+--.+...+- T Consensus 291 q~~~~~~-~~l~P~~~~ie~~l~~~l~~~~~~f~~~~l~~~d~ 332 (383) T protein:vir:10 291 QIKATYL-ANLNSYVNPIVDELRLKMNAPDLELDIKDMLDVDD 332 (383) T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhhCCceEEeechhhhccCH Confidence 9977655 699999999986 9999976656665333322222 No 83 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=100.00 E-value=3.9e-54 Score=313.40 Aligned_cols=326 Identities=11% Similarity=0.105 Sum_probs=227.0 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhh-c Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYV-K 79 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~-k 79 (344) |+..+++...+....... -..+...+|... +...-..++ ....+.+.|.....+..+.+.-+ +.++.. + T Consensus 1 Mglf~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~v---~~~~al~~~~V~~~i~~Ia~~ia--~l~~~~~~ 70 (384) T protein:vir:49 1 MPIFNITNLATESPPSNQ----DSFFDITDPEFL-DALNGSEWV---SAETALKNSDLFSIISQLSNDLA--TAKITTSR 70 (384) T ss_pred CccccccccCcccccccc----hhhccccchhhc-ccccCCcee---chhhhhccHHHHHHHHHHHHHHh--hCceeeec Confidence 887554322222111111 112222222110 000000111 00111122221111111111111 111111 1 Q ss_pred chhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---eeEEEcC----Cce Q lcl|Aclame:pro 80 RNILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---VYWWVPS----FNE 151 (344) Q Consensus 80 ~n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---~~~~~~~----~~~ 151 (344) +........|||+++.. |++.++.+++++||||++++|+..|+|++|+|++|.+|++..+.+ .+|.+.. .+. T Consensus 71 ~~~~~l~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~~~~~~~ 150 (384) T protein:vir:49 71 KQLQGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNQNGLYYNITFDDPRIPP 150 (384) T ss_pred chhhhhhhccCCCCCHHHHHHHHHHHhhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEecCccccc Confidence 22223346799999875 566788899999999999999999999999999999998765432 3555543 345 Q ss_pred EEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHh Q lcl|Aclame:pro 152 PTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKS 231 (344) Q Consensus 152 ~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~ 231 (344) .+.|+++||||+|.+++.+.++|+||+.++..++.++.++++++.++|+||++|++||++++...++++. ++..+.+ T Consensus 151 ~~~~~~~eVih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~---~~~~~~~ 227 (384) T protein:vir:49 151 KQHVPQGDILHFRLLSVDGGLTSVSPLMALGRELNIQKASDKLTLNALKNALNANGILKIKGGGLLDFKT---KQSRSRQ 227 (384) T ss_pred eeEecCccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCChHHHH---HHHHHHH Confidence 6889999999999998888899999999999999999999999999999999999999998755444333 3344456 Q ss_pred hcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHH Q lcl|Aclame:pro 232 KGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRN 311 (344) Q Consensus 232 ~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~ 311 (344) .|.+|+++++++ ++|++|+|++.+++|+||+|.+++++++||++|||||++||+..++.+++++++++...|++. T Consensus 228 ~~~~n~~~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~~~~~~~~i~~ 302 (384) T protein:vir:49 228 AMKQMQGGPLVL-----DDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESVVGGEGDKQSSLEMIYNIYFKAVSR 302 (384) T ss_pred hcccCCccceec-----CCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccccHHHHHHHHHHHHHH Confidence 778999999998 568999999999999999999999999999999999999998777778889999999999999 Q ss_pred HHHHHHHHHHH-HHHhhCccc---eeccccccccCCC Q lcl|Aclame:pro 312 ELIPLQDRIRE-INGWIGQEV---IRFKNYSLDTDNG 344 (344) Q Consensus 312 ~l~P~~~~ie~-ln~~L~~~~---irf~~y~l~~d~g 344 (344) +|.|+...|++ ++.+|..+. ++.+++.++|+-. T Consensus 303 ~l~pi~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 339 (384) T protein:vir:49 303 FLRPFVSELSKKLSCEVDADILPAVDPTGSNYIGLIN 339 (384) T ss_pred HHHHHHHHHHHHhchhhhhhhhhhhhccchHHHHHHH Confidence 99999999985 888875432 2334455555332 No 84 >protein:vir:78641 Length: 278 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429941;genbank:gi:156603995;genbank:GeneID:5525387 Probab=100.00 E-value=4.5e-53 Score=307.55 Aligned_cols=270 Identities=11% Similarity=0.133 Sum_probs=219.6 Q ss_pred hhhccccHHHHHHHHhhhhhhhhhhhhcchhhHHhhhcCCCCCH-HHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeC Q lcl|Aclame:pro 52 WYEPPVSFTGLAKSLRAAVHHSSPIYVKRNILASTFIPHPWLSQ-QDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSP 130 (344) Q Consensus 52 ~~~~p~~~~~l~~~~~~~~~~~~~i~~k~n~~~~~~~pnp~~~~-~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~ 130 (344) +-+.|+.++. .+....+.+ ..+...+|||++++ +||+.++.++++.||||++++|+..|++++|+|++ T Consensus 1 ia~l~~~~~~------~~~~~~~~l-----~~lL~~~PN~~~t~~~f~~~~~~~ll~~Gna~~~i~r~~~G~~~~l~~l~ 69 (278) T protein:vir:78 1 MASLPLKMYE------DYKVVNTEV-----SDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLN 69 (278) T ss_pred CccceeEEEe------cCcccccHH-----HHHHHhcCCCCCCHHHHHHHHHHHHhhcCCEEEEEEECCCCcEEEEEEEC Confidence 2233433221 111100011 11223579999987 55678888999999999999999999999999999 Q ss_pred cceeeccccCc---eeEEE-cCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCc Q lcl|Aclame:pro 131 AKYTRRGVEED---VYWWV-PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAG 206 (344) Q Consensus 131 ~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~ 206 (344) |..|++..+.+ .+|++ ..+|....|+++||||+|.+++.+++||+||+.++..++.++.++++++...+.|+ |+ T Consensus 70 ~~~v~v~~~~~~~~~~y~~~~~~g~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~~~--~~ 147 (278) T protein:vir:78 70 PDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DS 147 (278) T ss_pred CceeEEEEcCCCceEEEEEEcCCceEEEEccccEEEECCCCCCCCeeeccHHHHHHHHHHHHHHHHHHHHHHhcCC--Cc Confidence 99999876543 24444 35667889999999999999889999999999999999999999999976665554 78 Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChH Q lcl|Aclame:pro 207 YIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQ 286 (344) Q Consensus 207 gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~ 286 (344) ++++. ++.+++|+.+++++.|++.. +|+++++++ ++|++|++++++++|+||+|.+++++++||++|||||. T Consensus 148 ~i~~~-~~~l~~e~~~~~~~~~~~~~--~~~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~ 219 (278) T protein:vir:78 148 FMLKY-GSNVGKEKRQQVLEDFKQYY--EENGGILFQ-----EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSV 219 (278) T ss_pred EEEEe-CCCCCHHHHHHHHHHHHHHh--ccCCCceec-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHH Confidence 88875 56789999999999998754 467888888 56899999999999999999999999999999999999 Q ss_pred HhccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 287 LMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 287 llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) ++|+. ..++++|++++.+.|++.||+|+++.|++ ||.+|.++..+-.+|+++||-. T Consensus 220 ~lg~~--~~~~~sn~~~~~~~~~~~~l~P~~~~i~~~ln~~L~~~~e~~~g~~~~f~~~ 276 (278) T protein:vir:78 220 FLNAR--SNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKIGILNLTLN 276 (278) T ss_pred HhCCC--CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhcCCceEEEecc Confidence 99975 34689999999999999999999999986 9999987654556788888877 No 85 >protein:vir:960 Length: 413 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076614;genbank:gi:13095722;genbank:GeneID:920279 Probab=100.00 E-value=1.2e-52 Score=305.30 Aligned_cols=319 Identities=14% Similarity=0.152 Sum_probs=214.8 Q ss_pred CCCCCCCCC--------CcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHH---HHHHHhhh Q lcl|Aclame:pro 1 MSKKKGKTP--------QPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTG---LAKSLRAA 69 (344) Q Consensus 1 m~~~~~~~~--------~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---l~~~~~~~ 69 (344) ||-++|-+. .++... +........|.+++.....+..+.......+.+.|.-... ++..+... T Consensus 4 ~~~~~~~~~m~~F~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~cI~~ia~~ia~~ 77 (413) T protein:vir:96 4 VSEIRKDKNLKFFNNKRSPTEES------KAKDEIPKAPQVVMTLPNFFKELISDGYTKLSDSPEVRMAVDCIADLVSNM 77 (413) T ss_pred cchhhhhhcCCccccCCCcchhh------hhhccccccccccccchhhHhhhccchhHHHhhchHHHHHHHHHHHhhccC Confidence 443333211 111111 1111112223222211111100000000001112221111 12211111 Q ss_pred hhhh---h--hhhhcchhh--HHhhhcCCCCCH-HHHHHHHHHHHhcCCceEEEeeCCCC-ceEEEEEeCcceeeccccC Q lcl|Aclame:pro 70 VHHS---S--PIYVKRNIL--ASTFIPHPWLSQ-QDFSRFVLDFLVFGNAFLEKRYSTTG-KVIRLETSPAKYTRRGVEE 140 (344) Q Consensus 70 ~~~~---~--~i~~k~n~~--~~~~~pnp~~~~-~~~~~~~~d~ll~Gnay~~~~r~~~G-~~~~L~pl~~~~~~~~~~~ 140 (344) +.+- . .-..+.+.+ +....|||++++ +||+.++.+++++||||++++|+..| .+.+|+|++|..|++..+. T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~r~~~g~~~~~L~~l~~~~v~~~~~~ 157 (413) T protein:vir:96 78 TIQLMQNGETGDKRIKNDLSRVVDIEPNKYLSRKTFIQWLVRSMLLEGNGNAVVKPQVSGDKIIGLTPISPYKVTFNVSD 157 (413) T ss_pred ceEEEEecCCCccccccHHHHHHHhccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCceEEEEEecCceeEEEEcC Confidence 1110 0 000011112 233579999986 56788889999999999999999877 5789999999999987776 Q ss_pred ce-eEEEcCCceEEEEecccEEEecC-CCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCH Q lcl|Aclame:pro 141 DV-YWWVPSFNEPTAFAPGSVFHLLE-PDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDR 218 (344) Q Consensus 141 ~~-~~~~~~~~~~~~~~~~eIih~~~-~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~ 218 (344) +. +|.+..++ .+++++||||+|. +++.++++|+||+.++..++.++.++++|+.++|+||++|+|||+++ +.+++ T Consensus 158 ~~~~y~~~~~~--~~~~~~evih~k~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~-~~l~~ 234 (413) T protein:vir:96 158 DDLDYSITFDN--KEYDPSTLLHFVLNPSIERPFIGTGYKVALKDIVGNLKQASVTKKGFMASEYMPNLIVSVD-SDSDE 234 (413) T ss_pred CeEEEEEeecC--cEEchhhEEEEeccCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeC-CCCCH Confidence 65 45555555 3678999999984 67788999999999999999999999999999999999999999976 57899 Q ss_pred HHHHHHHHHHHH-hhcccccccccccCCCCccccceeeec-cCChhHHHHHHHHHhhHHHHHHHhcCChHHhcccccccc Q lcl|Aclame:pro 219 NDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPL-SEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVG 296 (344) Q Consensus 219 e~~~~l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl-~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~ 296 (344) ++.++++++|++ +.|..|+++++|+..+ +.++..+ +.+++|+||+|++++++++||++|||||.+||+. T Consensus 235 e~~~~~~~~~~~~~~g~~n~g~~~vl~~~----~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~----- 305 (413) T protein:vir:96 235 LSDEEGRENFEEMYLKRKEAGKPWIIPEG----MVNVQQIKPLTLNDLAINDAVTLDKKTVAGIFGVPAFLLGVG----- 305 (413) T ss_pred HHHHHHHHHHHHHhcCccccCceeeecCC----cccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCC----- Confidence 999999999976 5677899999988543 3344554 3578999999999999999999999999999852 Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 297 SLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 297 ~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) .+.+++...|+++||.|+++.||+ ||.+|..+ +++++||.- T Consensus 306 --~~~~~~~~~~~~~~l~P~~~~ie~~ln~~ll~~-----~~~~~fd~~ 347 (413) T protein:vir:96 306 --TYNKDEFNNFINTKIMSIAQVIQQTYNKLIVEE-----DMYFSLNPR 347 (413) T ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----CcEEEEech Confidence 234788889999999999999986 99998653 344444433 No 86 >protein:vir:4952 Length: 386 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049928;genbank:gi:9632899;genbank:GeneID:1262075 Probab=100.00 E-value=2e-52 Score=304.00 Aligned_cols=308 Identities=10% Similarity=0.115 Sum_probs=219.5 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCc---------e-----eccCcchhhhhhhhhccchhhhccccHHHHHHHH Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEP---------V-----PVLDRRDILDYVECISNGRWYEPPVSFTGLAKSL 66 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p---------~-----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 66 (344) |.-.++.++.++....+... .+.+.++ . ..+...+++.|+.+..+. .-+.|+.+ T Consensus 1 M~~f~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~-ia~~p~~~------- 68 (386) T protein:vir:49 1 MPIFNITNLATESPPINQES----FFDIADSDFLASLNSSEWVSAENALKNSDLFSIISQLSND-LATAKITT------- 68 (386) T ss_pred CchhhhhccCCCCcccchhh----hhhhhhccccccccCCceechhhhhccHHHHHHHHHHHHH-hhhCceee------- Confidence 77666554433322111111 0111110 0 011111222222211110 11111111 Q ss_pred hhhhhhhhhhhhcchhhHHhhhcCCCCCH-HHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---e Q lcl|Aclame:pro 67 RAAVHHSSPIYVKRNILASTFIPHPWLSQ-QDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---V 142 (344) Q Consensus 67 ~~~~~~~~~i~~k~n~~~~~~~pnp~~~~-~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---~ 142 (344) .++........|||+++. +||+.++.+++++||||++++|+..|++++|+|++|.+|++..+.+ . T Consensus 69 -----------~~~~~~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~i~~~~v~v~~~~~~~~~ 137 (386) T protein:vir:49 69 -----------SRKQLQGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNDNGRDMKWEYLRPSQVSFNRLDNQNGL 137 (386) T ss_pred -----------ccchhhhhhhccCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEecCceeEEEEcCCCceE Confidence 111222234579999886 4667888899999999999999999999999999999998766542 3 Q ss_pred eEEEc----CCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCH Q lcl|Aclame:pro 143 YWWVP----SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDR 218 (344) Q Consensus 143 ~~~~~----~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~ 218 (344) +|.+. .++....|+++||||+|.+++.++++|+||+.++..++.+..++++++.++|+||++|++||++++ .+++ T Consensus 138 ~y~~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~-~~~~ 216 (386) T protein:vir:49 138 YYNITFDDPHIAPKQHVPQNDILHFRLLSVDGGLTSVSPLMALGREFNIQKASDKLTISALKNALNANGILKIKG-GGLL 216 (386) T ss_pred EEEEEEcCccccceeEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEeCC-CCCh Confidence 44443 345678899999999999998888999999999999999999999999999999999999999875 5677 Q ss_pred HHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhcccccccccc Q lcl|Aclame:pro 219 NDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSL 298 (344) Q Consensus 219 e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~ 298 (344) ++.+++++.|+. +..|+++++|+ +.|++|+|++.+++|+||+|++++++++||++|||||++||+..+ ++ T Consensus 217 ~~~~~~~~~~~~--~~~n~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVPp~~lg~~~~---~~ 286 (386) T protein:vir:49 217 DFKTKVSRSRQA--MKQMQGGPLVL-----DDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESIVGGDGD---QQ 286 (386) T ss_pred HHHHHHHHHHHH--hccCCCCceec-----CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC---cc Confidence 788888888864 45789999998 568999999999999999999999999999999999999996432 34 Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH-HHHHhhCccceeccccccccCCC Q lcl|Aclame:pro 299 GDIEKVAKVFVRNELIPLQDRIR-EINGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 299 ~n~e~~~~~f~~~~l~P~~~~ie-~ln~~L~~~~irf~~y~l~~d~g 344 (344) ++.+ +.+.|+..+|.|++..|+ +++.+|+.++ .|+--.+.-.++ T Consensus 287 ~~~~-~~~~~~~~~i~~~l~~i~~~~~~~l~~~~-~~~~~~~~~~d~ 331 (386) T protein:vir:49 287 SSLE-MIYNIYFKSVSRYLRPFVSEMSKKLSCEV-DVDISPAVDPTG 331 (386) T ss_pred chHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchh-cccchhhhccCH Confidence 5554 446788999999999987 4999998764 343222222222 No 87 >protein:vir:79772 Length: 648 # NCBI annotation: portal protein # Family: family:all:3222 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429612;genbank:gi:156564103;genbank:GeneID:5525537 Probab=100.00 E-value=5.5e-52 Score=301.62 Aligned_cols=335 Identities=12% Similarity=0.043 Sum_probs=227.6 Q ss_pred CCCCC------CCCCCcch------------------h--hccccccceeEEEcCCceeccCcchhhhhhhhhccc-hhh Q lcl|Aclame:pro 1 MSKKK------GKTPQPAA------------------K--TMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNG-RWY 53 (344) Q Consensus 1 m~~~~------~~~~~~~~------------------~--~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~-~~~ 53 (344) |.+|- ++.+.... . ...+.........+.||..+.-.+.-..+......+ +++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~d~~~~~~~r~g~~~~~~~~g~~~~~ 80 (648) T protein:vir:79 1 MARKVWGRGFWSRISLMWRDEDDDKEPLVLEESMQLGEAPGAMPKGGGGGGSAKRDPKMSLVKRIGLAIMDGGGGGRDFE 80 (648) T ss_pred CccchhcchhhhhhhhhccCccccccccccccccccCCCccccCCCCcccccccccchhHHHHHhHHHHHhhcCCccccc Confidence 33321 01111110 0 001111224456777776654333222333333333 478 Q ss_pred hccccHHHHHHHHhhhhhhhhhhhhcchhhH---------------------HhhhcCCCCCH-HHHHHHHHHHHhcCCc Q lcl|Aclame:pro 54 EPPVSFTGLAKSLRAAVHHSSPIYVKRNILA---------------------STFIPHPWLSQ-QDFSRFVLDFLVFGNA 111 (344) Q Consensus 54 ~~p~~~~~l~~~~~~~~~~~~~i~~k~n~~~---------------------~~~~pnp~~~~-~~~~~~~~d~ll~Gna 111 (344) +||+++..|++++..+++|.+||...++.++ ...+|||+++. +||+.++.+++++||| T Consensus 81 epp~d~~~l~~l~~~np~V~~aI~iia~~ia~l~~~i~~~~~~~~~~~~~~~ll~rPn~~~t~~~f~~~l~~~lll~GNA 160 (648) T protein:vir:79 81 EPEFDFNEITSAYNTEGYVRQAVDKYIEMMFKADWDFVSKNPNAVEYIRMRFTLMAEATQIPTNQLFIEIAEDLVKYCNV 160 (648) T ss_pred cCCcCHHHHHHHHhcChHHHHHHHHHHHHHhhCcceEEecCCccchhhHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCe Confidence 9999999999999999999999876654333 23579998876 5778899999999999 Q ss_pred eEEEeeCCCCc---------------eEEEEEeCcceeeccccCce---e--EEEcCCceEEEEecccEEEecCCCCCCC Q lcl|Aclame:pro 112 FLEKRYSTTGK---------------VIRLETSPAKYTRRGVEEDV---Y--WWVPSFNEPTAFAPGSVFHLLEPDINQE 171 (344) Q Consensus 112 y~~~~r~~~G~---------------~~~L~pl~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~eIih~~~~~~~~~ 171 (344) |++++|+..|. +.+|+|++|.++++..+... + |...+++..+.|+++||||+|.+.+.++ T Consensus 161 YveiiRd~~G~~~~~l~~~~~~~~~~v~~l~pl~p~~v~v~~d~~g~~~~Y~y~~~g~~~~~~~~~~dIIHik~~~~~d~ 240 (648) T protein:vir:79 161 VIAKSRAKDALPFQGMNVMGVGDSMPVAGYFPLNLASMKVKRDKFGMIKGWQQEQEGQDKPQKFKPEDIVHIYYKREKGR 240 (648) T ss_pred EEEEEecCCCccchhhhhhhhccccceeeeEeecCceeEEEEcCCCceeeeEEEecCCceeEEecCccEEEEccCCCCCC Confidence 99999998884 47899999999987655432 2 3344556678899999999998877889 Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCcccc Q lcl|Aclame:pro 172 LYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADG 251 (344) Q Consensus 172 ~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g 251 (344) +||+||+.+++++|.++.++++|+.+||+||++|++||+++......+..+++++.|+.... +..+.+++.+.+. T Consensus 241 ~~GlSpi~~a~~aI~l~~aa~~~~~~fF~NGa~P~gil~~~~~~~~~e~~k~~~e~~~~~~~-----~~~i~gg~v~~~~ 315 (648) T protein:vir:79 241 AFGTPWLLPALDDIRALRQVEENVLRLVYRNLHPLWHVKVGLEQEGFGAEEGEVDLVRGEVE-----NMDVEGGMVTTER 315 (648) T ss_pred ceeccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCccchHHHHHHHHHHHHhcc-----cccccccccccce Confidence 99999999999999999999999999999999999999875433344555555666654322 2334443334455 Q ss_pred ceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHH-----HHHh Q lcl|Aclame:pro 252 IKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-----INGW 326 (344) Q Consensus 252 ~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-----ln~~ 326 (344) +.+.+.+ +++|+||++++++++++||++|||||++||+. +++++++.+++.. ++..++.|++..++. +++. T Consensus 316 ~~i~~~~-s~~dlqfle~rk~~~~eIa~aFgVPP~lLG~~--~~ss~stae~~~~-~~~~~i~~l~~~i~~~le~~~~~~ 391 (648) T protein:vir:79 316 VNISSIA-SNQIIDAKEYLKHFEQRAFTVLGVSELMMGRG--GTASRSTGDNLSS-DFKDRIKALQKVMATFINEFMVKE 391 (648) T ss_pred eeccccC-CHHHHHHHHHHHHHHHHHHHHhCCCHhHcccC--CCccchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH Confidence 5555543 66899999999999999999999999999975 4456777776655 456678888766542 2222 Q ss_pred hCccc-e-----eccccccccCCC Q lcl|Aclame:pro 327 IGQEV-I-----RFKNYSLDTDNG 344 (344) Q Consensus 327 L~~~~-i-----rf~~y~l~~d~g 344 (344) +..+. + ..+.++|+|++- T Consensus 392 ll~e~~l~~~l~~d~~ieF~~~~L 415 (648) T protein:vir:79 392 ILMEGGFDPVLNPDDKVEFRFNEI 415 (648) T ss_pred HhhhhhccccccccceEEEeeccc Confidence 21111 0 011224444332 No 88 >protein:vir:104259 Length: 403 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006980;genbank:gi:46401881;genbank:GeneID:2777676 Probab=100.00 E-value=1.4e-52 Score=304.89 Aligned_cols=320 Identities=15% Similarity=0.169 Sum_probs=219.1 Q ss_pred CCCCCCC--CCCcchhhccccccceeEEEcC----CceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGK--TPQPAAKTMTASAPKMEAFTFG----EPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSS 74 (344) Q Consensus 1 m~~~~~~--~~~~~~~~~~~~~~~~~~f~~~----~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~ 74 (344) |.-..-. +-.|.........+ +...+-. .+..++....++.|+.+..+ .+-+.|+.++.-..... ... T Consensus 1 mg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~~~~~~~~v~~cv~~Ia~-~ia~~p~~v~~~~~~~~----~~~ 74 (403) T protein:vir:10 1 MGFKSWITEKLNPGQRIIRDMEP-VSHRTNRKPFTTGQAYSKIEILNRTANMVID-SAAECSYTVGDKYNIVT----YAN 74 (403) T ss_pred Ccchhhhhhccchhhhhhhcccc-cccccCCcccccHHHHHHHHHHHHHHHHHHH-HHhhCceeEeecccccc----ccc Confidence 4433311 11111111111000 0000000 11122333445555554443 23344443211000000 000 Q ss_pred hhhhcchhhHHhhhcCCCCCH-HHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCceeEEEcCCceEE Q lcl|Aclame:pro 75 PIYVKRNILASTFIPHPWLSQ-QDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPT 153 (344) Q Consensus 75 ~i~~k~n~~~~~~~pnp~~~~-~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (344) ......-..+...+|||+++. +|++.++.+++++||||+++.+ ..|+|+++..+++..+.+..+.....+... T Consensus 75 ~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gnayi~~~~------~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~ 148 (403) T protein:vir:10 75 GVKTKTLDTLLNVRPNPFMDISTFRRLVVTDLLFEGCAYIYWDG------TSLYHVPAALMQVEADANKFIKKFIFNNQI 148 (403) T ss_pred ccccchHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEeC------ceeEeecCcceEEEEcCCceEEEEEecCce Confidence 000011112344579999986 5667888999999999998743 258899998888766555432222223346 Q ss_pred EEecccEEEecCCC----CCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 154 AFAPGSVFHLLEPD----INQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMV 229 (344) Q Consensus 154 ~~~~~eIih~~~~~----~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~ 229 (344) .++++||+|++..+ +.++++|+||+.+++++++++.++.+|..++|+||++|++||+++ ..++++++++++++|+ T Consensus 149 ~~~~~eiih~~~~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~-~~l~~e~~~~~~~~~~ 227 (403) T protein:vir:10 149 NYRVDEIIFIKDNSYVCGTNSQISGQSRVATVIDSLEKRSKMLNFKEKFLDNGTVIGLILETD-EILNKKLRERKQEELQ 227 (403) T ss_pred eecccceEEecccccccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeC-CCCCHHHHHHHHHHHH Confidence 78899999999654 457899999999999999999999999999999999999999975 5789999999999997 Q ss_pred H-hhcccccccccccCCCCccccceeeeccC--ChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHH Q lcl|Aclame:pro 230 K-SKGRNNFKNLFLYAPQGKADGIKIIPLSE--VATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAK 306 (344) Q Consensus 230 ~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~--~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~ 306 (344) + +.|.+|+++++|+ ++|++|+|++. +++|+||+|.+++++++||++|||||++||. ++++|++++.+ T Consensus 228 ~~~~g~~n~g~~~vl-----~~g~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~-----~~~sn~e~~~~ 297 (403) T protein:vir:10 228 LDYNPSTGQSSVLIL-----DGGMKAKPYSQISSFKDLDFKEDIEGFNKSICLAFGVPQVLLDG-----GNNANIRPNIE 297 (403) T ss_pred HHhCCcccCcceeec-----CCCceeEEecccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCC-----CCCcCHHHHHH Confidence 6 5678999999998 56899999986 5779999999999999999999999999974 46789999999 Q ss_pred HHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 307 VFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 307 ~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) .|+++||.|++..||+ +|.+|+.+ ++|+--.+.+-.+ T Consensus 298 ~f~~~tl~P~~~~ie~~l~~~L~~~-~~~d~~~~~~l~~ 335 (403) T protein:vir:10 298 LFYYMTIIPMLNKLTSSLTFFFGYK-ITPNTKEVAALTP 335 (403) T ss_pred HHHHHHHHHHHHHHHHHHHHhcCce-eeeccchhhhccc Confidence 9999999999999986 99999765 3555433333333 No 89 >protein:vir:95378 Length: 406 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764474;genbank:gi:115334628;genbank:GeneID:5179265 Probab=100.00 E-value=5.7e-51 Score=296.03 Aligned_cols=316 Identities=13% Similarity=0.101 Sum_probs=217.1 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCcee--------ccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVP--------VLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHH 72 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~--------~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~ 72 (344) |+-..+..+................|.-+.... ++...+++.|+....+. +.+.|+.++ +..... T Consensus 1 Mg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~-ia~~~~~~~------~~~~~~ 73 (406) T protein:vir:95 1 MGLFDRWRRTKRKSKIRADTGYVGLFMSGEDVSFLVPGYVRLSDNPEVRMAVHKIADL-ISSMTIYLM------QNTEDG 73 (406) T ss_pred CcchhhhccccccccccccchhhhhhccCcccCccccCHHHHhhcHHHHHHHHHHHHh-hccCceEEE------EecCCc Confidence 665532221111111111111112222222111 11122233333322221 112222211 000000 Q ss_pred hhhhhhcc-hhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCc--eEEEeeCCCCceEEEEEeCcceeeccccCceeEEEcC Q lcl|Aclame:pro 73 SSPIYVKR-NILASTFIPHPWLSQQ-DFSRFVLDFLVFGNA--FLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPS 148 (344) Q Consensus 73 ~~~i~~k~-n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gna--y~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~~~~~~~ 148 (344) . ...+. -..+....|||++++. ||+.++.++++.||+ |+.+.|+..|+|++|+|++|.+|++..+.+.| .+.. T Consensus 74 ~--~~~~~~~~~~l~~~PN~~~t~~~f~~~~~~~~ll~g~g~a~~~~~~~~~g~~~~l~~i~~~~v~~~~~~~~~-~~~~ 150 (406) T protein:vir:95 74 D--IRIRNELSRKIDITPYSLMTRKSWMYNIVYTMLLDGEGNSVVFPKYTADGLIDELVPLTPSKVNFLDTPDGY-QVLY 150 (406) T ss_pred c--eeecchHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCceEEEEEEECCCCcEEEEEEEcCceeEEEEcCCeE-EEEe Confidence 0 00011 1123356899999875 667888899998765 66678999999999999999999998887764 3444 Q ss_pred CceEEEEecccEEEecC-CCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHH Q lcl|Aclame:pro 149 FNEPTAFAPGSVFHLLE-PDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLREN 227 (344) Q Consensus 149 ~~~~~~~~~~eIih~~~-~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~ 227 (344) ++ ..|+++||||+|. +++.++++|+||+.++..++.++.++++|+.++|+||++|++||+++ +.+++++.++++++ T Consensus 151 ~~--~~~~~~evih~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~-~~l~~e~~~~~~~~ 227 (406) T protein:vir:95 151 GG--QTFNYDEVLHFIYNPDPERPYIGRGYRVVLKDIADNLKQATATKKSFMSGKYMPSLIVKVD-AATAELSSEEGRNA 227 (406) T ss_pred cc--EEEchhHEEEeeccCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeC-CCCCHHHHHHHHHH Confidence 44 3689999999995 56778999999999999999999999999999999999999999976 46899999999999 Q ss_pred HHH-hhcccccccccccCCCCccccceeeecc-CChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHH Q lcl|Aclame:pro 228 MVK-SKGRNNFKNLFLYAPQGKADGIKIIPLS-EVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVA 305 (344) Q Consensus 228 ~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~-~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~ 305 (344) |.+ +.|..|+++++|+..+ +.+++++. ++++|+||+|.+++++++||++|||||++||+. ++.+++. T Consensus 228 ~~~~~~g~~n~~~~~v~~~~----~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~-------~~~~~~~ 296 (406) T protein:vir:95 228 VFKKYLQATEAGQPWIIPAE----LLEVEQVKPLSLKDIAINEAVELDKRTVAGMFGVPAFLLGIG-------EFNRDEY 296 (406) T ss_pred HHHHhccccccCCceeecCC----CccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCC-------CchHHHH Confidence 965 6788999999887543 44555553 578999999999999999999999999999852 2457888 Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 306 KVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 306 ~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) ..|+++||.|++.+||+ ||.+|..+ .+|+++||-- T Consensus 297 ~~~~~~~l~P~~~~ie~~l~~~l~~~----~~~~~~fd~~ 332 (406) T protein:vir:95 297 NNFINSTILPIAKGIEQELTRKLLIS----PDLYFKFNPR 332 (406) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC----CCcEEEeech Confidence 99999999999999985 99998654 2344555444 No 90 >protein:vir:80134 Length: 403 # NCBI annotation: Phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425602;genbank:gi:155042935;genbank:GeneID:5469563 Probab=100.00 E-value=1.7e-50 Score=293.37 Aligned_cols=311 Identities=13% Similarity=0.120 Sum_probs=213.8 Q ss_pred CCCCC--CCCCCcchhhccccccceeEEEcCCcee---------ccCcchhhhhhhhhccchhhhccccHHHHHHHHhhh Q lcl|Aclame:pro 1 MSKKK--GKTPQPAAKTMTASAPKMEAFTFGEPVP---------VLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAA 69 (344) Q Consensus 1 m~~~~--~~~~~~~~~~~~~~~~~~~~f~~~~p~~---------~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~ 69 (344) |+-.. +|+...... . ....|..+.... .....+++.|+....+. +-+.|+.++ +.. T Consensus 1 Mg~~~~f~~k~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~I~~ia~~-iA~~p~~~~------~~~ 67 (403) T protein:vir:80 1 MGLFNFFRRKTRSEPT---N---AISWFLTQEAYDTLAIPGYTRLSDNPEVRMAVHKIAEL-ISSMTIHLM------QNT 67 (403) T ss_pred Cccccccccccccccc---c---hhhhhcccccccccccchhhhhhhhHHHHHHHHHHHHh-hhhCceEEE------Eec Confidence 77432 221111100 0 011111111111 11223344444433322 223333321 111 Q ss_pred hhhhhhhhhcch-hhHHhhhcCCCCCH-HHHHHHHHHHHh--cCCceEEEeeCCCCceEEEEEeCcceeeccccCceeEE Q lcl|Aclame:pro 70 VHHSSPIYVKRN-ILASTFIPHPWLSQ-QDFSRFVLDFLV--FGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWW 145 (344) Q Consensus 70 ~~~~~~i~~k~n-~~~~~~~pnp~~~~-~~~~~~~~d~ll--~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~~~~ 145 (344) ... .....+. ..+....|||++++ +||+.++.++++ .||||+++.|+..|+|++|+|++|..|++..+.+.+. T Consensus 68 ~~g--~~~~~~~~~~lL~~~PN~~~t~~~f~~~~v~~~ll~~~Gna~i~~~~~~~g~~~~L~~l~p~~v~~~~~~~g~~- 144 (403) T protein:vir:80 68 DNG--DIRIKNELSRKIDINPYSLMTRKAWMYNIVYTMLLDGEGNSVVFPKYTTSGLIDELIPLAPSKVSFVDTDTGYQ- 144 (403) T ss_pred CCc--eeecCChHHHHHhccCCcCCCHHHHHHHHHHHHhhcCCccEEEEEEEcCCCcEEEEEEEcCCeeEEEEcCCceE- Confidence 100 0011111 12233579999987 566778889988 5889999999999999999999999998877666542 Q ss_pred EcCCceEEEEecccEEEec-CCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHH Q lcl|Aclame:pro 146 VPSFNEPTAFAPGSVFHLL-EPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEML 224 (344) Q Consensus 146 ~~~~~~~~~~~~~eIih~~-~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l 224 (344) +...+ ..++++||||++ .+++.++++|+||+..+..++.+..++++++.++|+||++|++||++++ .+++++.+++ T Consensus 145 ~~y~~--~~~~~~eiih~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~-~~~~~~~~~~ 221 (403) T protein:vir:80 145 IWYQG--KAYNYDEVLHFIVNPDPEKPYMGRGYRVVLKDIVNNLKQATTTKKSFMSGKYMPSLIVKVDA-ATAELSSEEG 221 (403) T ss_pred EEEee--cccchhhEEEEeccCCCcCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCC-CCChHHHHHH Confidence 22222 358899999999 4678889999999999999999999999999999999999999999865 5788888888 Q ss_pred HHHHH-HhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHH Q lcl|Aclame:pro 225 RENMV-KSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEK 303 (344) Q Consensus 225 ~~~~~-~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~ 303 (344) +++|. ++.|..|+++++++..++ .+..+++|+ +++|+||+|.+++++++||++|||||++||+.. ..++ T Consensus 222 ~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~l--~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~-------~~~~ 291 (403) T protein:vir:80 222 RNAVFKKYLEASEAGQPWIIPAEL-LDVEQVKPL--SLKDLAIHETVELDKRTVAGIFGVPAFLLGVGK-------YDKD 291 (403) T ss_pred HHHHHHHHhhhhhcCCeeeecccc-cccceeccC--CHHHHHHHHHHHHhHHHHHHHhCCCHHHcCCCC-------ccHH Confidence 98885 567888999988875433 345567776 578999999999999999999999999998632 1234 Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 304 VAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 304 ~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) ....|+++||+|++++||+ ||++|..+ .+|+++||.- T Consensus 292 ~~~~f~~~~l~P~~~~ie~~l~~kll~~----~~~~~~f~~~ 329 (403) T protein:vir:80 292 EYNNFINSTILPIAKGIEQELTRKLLIS----PDLYFKFNPR 329 (403) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCC----CCcEEEeech Confidence 5567999999999999995 99988654 3455666543 No 91 >protein:vir:6210 Length: 394 # NCBI annotation: Portal protein # Family: family:all:10882 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852590;genbank:gi:31415850;genbank:GeneID:1489208 Probab=100.00 E-value=1.8e-49 Score=287.78 Aligned_cols=312 Identities=13% Similarity=0.067 Sum_probs=211.6 Q ss_pred CCCCCCCCCC---cchh--hccccccceeEEEcCC---ceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQ---PAAK--TMTASAPKMEAFTFGE---PVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHH 72 (344) Q Consensus 1 m~~~~~~~~~---~~~~--~~~~~~~~~~~f~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~ 72 (344) |+....-++. .+.. ........ .....+. +..++....++.|+....+. .-+.|+.++. .+.. T Consensus 1 MGl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vt~~~al~~~~v~~~i~~Ia~~-iA~lp~~v~~------~~g~- 71 (394) T protein:vir:62 1 MGLRDRFSNYLFKKAEKRGYLDNVLGK-SIRYSGVYVTDSNILQSSDVYELLQDISNQ-MVLADIVVED------EFGN- 71 (394) T ss_pred CchhhhhhhhccCCCCchhhhhhhhhc-ccccCccccChhhhhccHHHHHHHHHHHHh-hcccceEEEc------CCCc- Confidence 6643221111 1100 00000000 0000000 11122233344444433332 2234443321 1000 Q ss_pred hhhhhhcchhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCceeEEEcCCce Q lcl|Aclame:pro 73 SSPIYVKRNILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNE 151 (344) Q Consensus 73 ~~~i~~k~n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~~~~~~~~~~ 151 (344) . +. .+.......+|||++++. ||+.++.+++++||+|+++.++..+.+. .+++..+...++.+..++ T Consensus 72 -~-~~-~~~~~~Ll~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~- 139 (394) T protein:vir:62 72 -E-IK-DDIALQILRNPNNYLTQSEFIKLMTNTYLLEGETFPILNGAQIHLAS--------NVFTELDDNLVEHFNIGG- 139 (394) T ss_pred -c-cc-hhhHHHHhccCCCCCCHHHHHHHHHHHHHhcCCeEEEEecceeeccc--------cceEEECCceEEEEeeCC- Confidence 0 00 011122345799999875 6678899999999999999766544322 233334444555555444 Q ss_pred EEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCC-CCHHHHHHHHHHHHH Q lcl|Aclame:pro 152 PTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAV-QDRNDIEMLRENMVK 230 (344) Q Consensus 152 ~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~-~~~e~~~~l~~~~~~ 230 (344) ++|+++||||+|.++ .++++|+||+..+..++.++.++++|+.++|+||++|++||+++... .++++.+++++.|++ T Consensus 140 -~~~~~~eiih~r~~~-~d~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~~~~~~~~~ 217 (394) T protein:vir:62 140 -HEIPPCMIRHVKNIG-ADHLRGKGILDLGRDTLEGVMSAEKTLTDKYKKGGLLTFLLNLDAHINPQNGAQSKLINAILD 217 (394) T ss_pred -EEechhheEEecCcC-CCCccccChHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCCCCCcCHHHHHHHHHHHHH Confidence 578999999999886 47899999999999999999999999999999999999999987542 356678999999965 Q ss_pred -hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHH Q lcl|Aclame:pro 231 -SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFV 309 (344) Q Consensus 231 -~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~ 309 (344) +.|.+|+++++|+..+ .++++++++.+++|+||+|.+++++++||++|||||.+||. ++++|+|++.+.|+ T Consensus 218 ~~~g~~n~g~~~vl~~g---~~~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~-----~~~sn~e~~~~~~~ 289 (394) T protein:vir:62 218 QLESIDEARSVKMIPLG---KGYSIDTLKSPLDDEKTLAYLNVYKKDLGKFLGINVDTYTE-----LIKEDIEKAMMYIH 289 (394) T ss_pred HhccccccCceeEeeCC---CceeEEecCCCcchHHHHHHHHHHHHHHHHHhCCCHHHcCC-----CCCcCHHHHHHHHH Confidence 5778999999998542 35688899999999999999999999999999999999985 24679999999999 Q ss_pred HHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 310 RNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 310 ~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) ++||.|++.+||+ ||.+|..+..+ ..+.++||.- T Consensus 290 ~~~l~P~~~~ie~~l~~kll~~~~~-~~~~~~fd~~ 324 (394) T protein:vir:62 290 NKAVRPIMKNFEDHLSLLFYAQNSG-KRIKFKINIL 324 (394) T ss_pred HHHHHHHHHHHHHHHhhhhcCcccc-CceEEEechh Confidence 9999999999985 99888654333 3466777655 No 92 >protein:vir:101289 Length: 395 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908829;genbank:gi:118725093;genbank:GeneID:4555860 Probab=100.00 E-value=1.1e-45 Score=267.05 Aligned_cols=305 Identities=14% Similarity=0.062 Sum_probs=201.9 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCc---eeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEP---VPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIY 77 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~ 77 (344) |+-..+........ .. +..+..+.. ...+...+++.|+....+. .-+.|+.++. .. .... T Consensus 1 Mg~f~~lf~~~~~~---~~---~~~~~~~~~v~~~~~~~~~~v~~~i~~Ia~~-iA~~p~~~~~------~~----~~~~ 63 (395) T protein:vir:10 1 MSILEKIFKTRKDI---TY---MLDLDMIEDLSQQAYVKRLAIDSCIEFVARA-VAQSHFKVLE------GN----RIQK 63 (395) T ss_pred CchhhhhhccCccc---cc---cccchhccccchhhhhhhHHHHHHHHHHHHh-hccceeEecc------CC----cccc Confidence 77754321111100 00 001111111 1112333444444333322 2223332211 00 0011 Q ss_pred hcchhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeec---cccCceeEEEcCCceEE Q lcl|Aclame:pro 78 VKRNILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRR---GVEEDVYWWVPSFNEPT 153 (344) Q Consensus 78 ~k~n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~---~~~~~~~~~~~~~~~~~ 153 (344) ... ..+....|||++++. ||+.++.++++.|++|+++.++. + ++++++..++. ..+.-..+.+...+... T Consensus 64 ~~~-~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (395) T protein:vir:10 64 NDV-YYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSK-E----LLIADSFYREEYALYDDIFKDVTVKDYTYQR 137 (395) T ss_pred chH-HHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCC-C----eEecCCccceeEeecCcceeEEEEcCceeee Confidence 011 112234799999875 56778889999999888775543 2 34444433332 22222234445556677 Q ss_pred EEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhc Q lcl|Aclame:pro 154 AFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKG 233 (344) Q Consensus 154 ~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g 233 (344) .++++||||+|.+++....||+||+.++..++....+ .|.+|+.++++|.+++..+++++++++++.|++..+ T Consensus 138 ~~~~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~~-------~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~ 210 (395) T protein:vir:10 138 TFTMQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMIG-------AQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFN 210 (395) T ss_pred eeccccEEEEccCCCCcccccchHHHHHHHHHHHHHH-------HHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhc Confidence 8999999999998888889999999999888876543 467788899999998888899999999999988777 Q ss_pred ccccccccccCCCCccccceeeeccCChhHH-----HHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHH Q lcl|Aclame:pro 234 RNNFKNLFLYAPQGKADGIKIIPLSEVATKD-----DFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVF 308 (344) Q Consensus 234 ~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~-----qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f 308 (344) +.|+++..|+.- ++|++|+|++.++.++ ||+|++++++++||++|||||++|| ++++|+|++.+.| T Consensus 211 ~~~~~~~~v~~l---~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~------~~~sn~e~~~~~~ 281 (395) T protein:vir:10 211 TFNKNQLAIAPL---IEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIY------GETADLEKNTLVF 281 (395) T ss_pred cccccCcceEEc---CCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhc------CcccCHHHHHHHH Confidence 666655444211 4688999999888765 9999999999999999999999996 3678999999999 Q ss_pred HHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 309 VRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 309 ~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +++||.|++.+||+ +|++|..+-.++.+++|+++.= T Consensus 282 ~~~~l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~l 318 (395) T protein:vir:10 282 EKFCLTPLLKKIQNELNAKLITQSMYLKDTRIEIVGV 318 (395) T ss_pred HHHHHHHHHHHHHHHHHHhhcChhhhcccceecchhh Confidence 99999999999985 9999977655556666666433 No 93 >protein:vir:100650 Length: 395 # NCBI annotation: 77ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958604;genbank:gi:41189523;genbank:GeneID:2743796 Probab=100.00 E-value=1.1e-45 Score=267.05 Aligned_cols=305 Identities=14% Similarity=0.062 Sum_probs=201.9 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCc---eeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEP---VPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIY 77 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~ 77 (344) |+-..+........ .. +..+..+.. ...+...+++.|+....+. .-+.|+.++. .. .... T Consensus 1 Mg~f~~lf~~~~~~---~~---~~~~~~~~~v~~~~~~~~~~v~~~i~~Ia~~-iA~~p~~~~~------~~----~~~~ 63 (395) T protein:vir:10 1 MSILEKIFKTRKDI---TY---MLDLDMIEDLSQQAYVKRLAIDSCIEFVARA-VAQSHFKVLE------GN----RIQK 63 (395) T ss_pred CchhhhhhccCccc---cc---cccchhccccchhhhhhhHHHHHHHHHHHHh-hccceeEecc------CC----cccc Confidence 77754321111100 00 001111111 1112333444444333322 2223332211 00 0011 Q ss_pred hcchhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeec---cccCceeEEEcCCceEE Q lcl|Aclame:pro 78 VKRNILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRR---GVEEDVYWWVPSFNEPT 153 (344) Q Consensus 78 ~k~n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~---~~~~~~~~~~~~~~~~~ 153 (344) ... ..+....|||++++. ||+.++.++++.|++|+++.++. + ++++++..++. ..+.-..+.+...+... T Consensus 64 ~~~-~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (395) T protein:vir:10 64 NDV-YYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSK-E----LLIADSFYREEYALYDDIFKDVTVKDYTYQR 137 (395) T ss_pred chH-HHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCC-C----eEecCCccceeEeecCcceeEEEEcCceeee Confidence 011 112234799999875 56778889999999888775543 2 34444433332 22222234445556677 Q ss_pred EEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhc Q lcl|Aclame:pro 154 AFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKG 233 (344) Q Consensus 154 ~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g 233 (344) .++++||||+|.+++....||+||+.++..++....+ .|.+|+.++++|.+++..+++++++++++.|++..+ T Consensus 138 ~~~~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~~-------~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~ 210 (395) T protein:vir:10 138 TFTMQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMIG-------AQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFN 210 (395) T ss_pred eeccccEEEEccCCCCcccccchHHHHHHHHHHHHHH-------HHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhc Confidence 8999999999998888889999999999888876543 467788899999998888899999999999988777 Q ss_pred ccccccccccCCCCccccceeeeccCChhHH-----HHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHH Q lcl|Aclame:pro 234 RNNFKNLFLYAPQGKADGIKIIPLSEVATKD-----DFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVF 308 (344) Q Consensus 234 ~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~-----qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f 308 (344) +.|+++..|+.- ++|++|+|++.++.++ ||+|++++++++||++|||||++|| ++++|+|++.+.| T Consensus 211 ~~~~~~~~v~~l---~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~------~~~sn~e~~~~~~ 281 (395) T protein:vir:10 211 TFNKNQLAIAPL---IEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIY------GETADLEKNTLVF 281 (395) T ss_pred cccccCcceEEc---CCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhc------CcccCHHHHHHHH Confidence 666655444211 4688999999888765 9999999999999999999999996 3678999999999 Q ss_pred HHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 309 VRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 309 ~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +++||.|++.+||+ +|++|..+-.++.+++|+++.= T Consensus 282 ~~~~l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~l 318 (395) T protein:vir:10 282 EKFCLTPLLKKIQNELNAKLITQSMYLKDTRIEIVGV 318 (395) T ss_pred HHHHHHHHHHHHHHHHHHhhcChhhhcccceecchhh Confidence 99999999999985 9999977655556666666433 No 94 >protein:vir:9507 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835554;genbank:gi:30043953;genbank:GeneID:1260535 Probab=100.00 E-value=1.1e-45 Score=267.05 Aligned_cols=305 Identities=14% Similarity=0.062 Sum_probs=201.9 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCc---eeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEP---VPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIY 77 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~ 77 (344) |+-..+........ .. +..+..+.. ...+...+++.|+....+. .-+.|+.++. .. .... T Consensus 1 Mg~f~~lf~~~~~~---~~---~~~~~~~~~v~~~~~~~~~~v~~~i~~Ia~~-iA~~p~~~~~------~~----~~~~ 63 (395) T protein:vir:95 1 MSILEKIFKTRKDI---TY---MLDLDMIEDLSQQAYVKRLAIDSCIEFVARA-VAQSHFKVLE------GN----RIQK 63 (395) T ss_pred CchhhhhhccCccc---cc---cccchhccccchhhhhhhHHHHHHHHHHHHh-hccceeEecc------CC----cccc Confidence 77754321111100 00 001111111 1112333444444333322 2223332211 00 0011 Q ss_pred hcchhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeec---cccCceeEEEcCCceEE Q lcl|Aclame:pro 78 VKRNILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRR---GVEEDVYWWVPSFNEPT 153 (344) Q Consensus 78 ~k~n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~---~~~~~~~~~~~~~~~~~ 153 (344) ... ..+....|||++++. ||+.++.++++.|++|+++.++. + ++++++..++. ..+.-..+.+...+... T Consensus 64 ~~~-~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (395) T protein:vir:95 64 NDV-YYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSK-E----LLIADSFYREEYALYDDIFKDVTVKDYTYQR 137 (395) T ss_pred chH-HHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCC-C----eEecCCccceeEeecCcceeEEEEcCceeee Confidence 011 112234799999875 56778889999999888775543 2 34444433332 22222234445556677 Q ss_pred EEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhc Q lcl|Aclame:pro 154 AFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKG 233 (344) Q Consensus 154 ~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g 233 (344) .++++||||+|.+++....||+||+.++..++....+ .|.+|+.++++|.+++..+++++++++++.|++..+ T Consensus 138 ~~~~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~~-------~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~ 210 (395) T protein:vir:95 138 TFTMQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMIG-------AQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFN 210 (395) T ss_pred eeccccEEEEccCCCCcccccchHHHHHHHHHHHHHH-------HHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhc Confidence 8999999999998888889999999999888876543 467788899999998888899999999999988777 Q ss_pred ccccccccccCCCCccccceeeeccCChhHH-----HHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHH Q lcl|Aclame:pro 234 RNNFKNLFLYAPQGKADGIKIIPLSEVATKD-----DFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVF 308 (344) Q Consensus 234 ~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~-----qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f 308 (344) +.|+++..|+.- ++|++|+|++.++.++ ||+|++++++++||++|||||++|| ++++|+|++.+.| T Consensus 211 ~~~~~~~~v~~l---~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~------~~~sn~e~~~~~~ 281 (395) T protein:vir:95 211 TFNKNQLAIAPL---IEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIY------GETADLEKNTLVF 281 (395) T ss_pred cccccCcceEEc---CCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhc------CcccCHHHHHHHH Confidence 666655444211 4688999999888765 9999999999999999999999996 3678999999999 Q ss_pred HHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 309 VRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 309 ~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +++||.|++.+||+ +|++|..+-.++.+++|+++.= T Consensus 282 ~~~~l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~l 318 (395) T protein:vir:95 282 EKFCLTPLLKKIQNELNAKLITQSMYLKDTRIEIVGV 318 (395) T ss_pred HHHHHHHHHHHHHHHHHHhhcChhhhcccceecchhh Confidence 99999999999985 9999977655556666666433 No 95 >protein:vir:95965 Length: 385 # NCBI annotation: ORF011 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239800;genbank:gi:66395461;genbank:GeneID:5132882 Probab=100.00 E-value=1.9e-44 Score=260.23 Aligned_cols=307 Identities=11% Similarity=0.050 Sum_probs=199.9 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) |+-..+.-...... ...-....+.-..+...+...+++.|+....+ ..-+.|+.++. ... ..... T Consensus 1 Mg~f~~~f~~~~~~---~~~~~~~~~~~~~~~~a~~~~~v~~~i~~ia~-~ia~~p~~~~~------~~~----~~~~~- 65 (385) T protein:vir:95 1 MGLFDSVFKRHSEL---SWMYDLEFLQDKSKKAYLKQIALNTVVEMVAR-TISQSEFRVMK------NNT----KEKGT- 65 (385) T ss_pred CchhhhhhccCccc---ccccchhhhhccchhhhhhhHHHHHHHHHHHH-HHcccceeeee------cCc----cccch- Confidence 76533211111100 00000111111112222333344444443333 23333333221 000 00000 Q ss_pred hhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCceeEE--EcCCceEEEEec Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWW--VPSFNEPTAFAP 157 (344) Q Consensus 81 n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 157 (344) ..-+....|||++++. ||+.++.++++.||||+++.|++ +.++.+.+..+..+.... ..|+. +...+....+++ T Consensus 66 l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~i~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 142 (385) T protein:vir:95 66 LYYLLNVRPNRNQNAVDFWQKFIFKLIMDNEVLVVKNDEG-HFFVADDFEKEDELGLYS--HRFTNVLVNDFEFKRVFTM 142 (385) T ss_pred HHHHHhcccCcCCCHHHHHHHHHHHHhhcCceEEEEecCC-Ceeecccccccccccccc--ccceeeeecccceeeeecc Confidence 0112235799999875 56788899999999999887764 445555555554443322 22333 334455678999 Q ss_pred ccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEec-CCCCCHHHHHHHHHHHHHh-hccc Q lcl|Aclame:pro 158 GSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVT-DAVQDRNDIEMLRENMVKS-KGRN 235 (344) Q Consensus 158 ~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~-~~~~~~e~~~~l~~~~~~~-~g~~ 235 (344) +||||+|.+++.+..+|.||+..+..++....++.. | ++.|+++|.++ ...+++++.+++++.|++. .|.. T Consensus 143 ~eiih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~-----~--~~~~~g~l~~~~~~~~~~e~~~~~~~~~~~~~~g~~ 215 (385) T protein:vir:95 143 DDVIYLKYNNQKLDAFSLGLFEDYGEIFGRMIDLQM-----L--NNQIRGILKVDATKFYNKEKQKELQAYIDTLFDAFQ 215 (385) T ss_pred ccEEEecCCCCCcccccchHHHHHHHHHHHHHHHHH-----h--cCCCceEEEeCCccCCCHHHHHHHHHHHHHHhhhhh Confidence 999999999887788999999999999877666532 2 33478888875 3568999999999999765 5554 Q ss_pred cc-ccccccCCCCccccceeeeccC------ChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHH Q lcl|Aclame:pro 236 NF-KNLFLYAPQGKADGIKIIPLSE------VATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVF 308 (344) Q Consensus 236 n~-~~~~vl~~~~~~~g~~~~pl~~------~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f 308 (344) |. +.++++ ++|++|+|+++ +++|+||+|++++++++||++|||||++|| ++++|+|++.+.| T Consensus 216 ~~~~~i~~l-----~~g~~~~~l~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~------~~~sn~e~~~~~~ 284 (385) T protein:vir:95 216 NNTIAVVPL-----TEGLAYEEHSNRGAAQSAQQFSELNELKKTVLTDVARMIGVPPSLVL------GEMADLEKTIESY 284 (385) T ss_pred hcCCceEEc-----CCCceeEeecccccccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhc------CCCcCHHHHHHHH Confidence 44 456666 57899999985 567999999999999999999999999995 4689999999999 Q ss_pred HHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 309 VRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 309 ~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +++||.|++..||+ +|.+|.++..+.. ++++||-- T Consensus 285 ~~~~l~P~~~~ie~~l~~~L~~~~~~~~-~~~~fd~~ 320 (385) T protein:vir:95 285 LQFCINPLLRKIEAELNSKFFYQDEYLN-DDMHIKVV 320 (385) T ss_pred HHHHHHHHHHHHHHHHHhhcCChhhccc-ceEEEech Confidence 99999999999986 9999977654433 34555543 No 96 >protein:vir:78310 Length: 376 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468642;genbank:gi:157325220;genbank:GeneID:5601655 Probab=100.00 E-value=6e-43 Score=252.06 Aligned_cols=309 Identities=10% Similarity=0.036 Sum_probs=191.4 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) |+-.....+.... +........+.-..++..+...+++.|+....+. .-+.|+.++. ... ..... T Consensus 1 Mg~f~~l~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~v~~~i~~Ia~~-ia~~p~~~~~------~~~----~~~~~- 65 (376) T protein:vir:78 1 MGFFSELFKRNKE---IEWMWDLDFLEDKTTKVYLKKMALNTCVKHIART-IAKSDFRLKN------GET----SVRDK- 65 (376) T ss_pred CchhhhhhccCCc---cccccchhhccccchhhhhhhHHHHHHHHHHHHh-hcccceeecc------ccc----cccch- Confidence 8765422111111 1111111222222233445555666665554442 3344544321 100 00000 Q ss_pred hhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCceeEEEcCCceEEEEeccc Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPGS 159 (344) Q Consensus 81 n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 159 (344) ..-+...+|||++++. ||+.++.++++.||+|+++.|+..|.+..++|+.+..+..... ..+.+...+....|+++| T Consensus 66 l~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~e 143 (376) T protein:vir:78 66 LYYKLNIRPNTDMSSSSFWEKVIYKLIYDNECLIVLSDTDDFLIADSYVRKEFAFFPDVF--EGVTVKDYRYNRNFSMDD 143 (376) T ss_pred HHHHHhhccccCCCHHHHHHHHHHHHhHcCcEEEEEEeCCCeeeccceeecccceeeeee--eeeeeecceeeeeecccc Confidence 1112335799999875 5677888999999999999999999999999998866533221 112223334456799999 Q ss_pred EEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHH-HHHccCCCceEEEecCCCCCHHHHHHHHHHHHHh-hcc-cc Q lcl|Aclame:pro 160 VFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRK-YYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKS-KGR-NN 236 (344) Q Consensus 160 Iih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~-~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~-~g~-~n 236 (344) |||+|........++.+.+..+... .....+. .+.||.++++++. ..+.+++++.+++++.|++. +|. .+ T Consensus 144 vih~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~g~~~~ 216 (376) T protein:vir:78 144 VIFLEYGNERLSAFTDGMFEDYGEL------FGKMIRAQMRNFQIRGAVNFK-MAGVADKDKQTKLQEYIDKVYASFNNN 216 (376) T ss_pred EEEeccCCCCchhhhhHHHHHHHHH------HHHHHHHHHhcCCCceeEEEc-cCCCCCHHHHHHHHHHHHHHhcccccc Confidence 9999965432222222222222211 1122223 3445555555554 45678999999999999765 454 34 Q ss_pred cccccccCCCCccccceeeeccCChhH-----HHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHH Q lcl|Aclame:pro 237 FKNLFLYAPQGKADGIKIIPLSEVATK-----DDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRN 311 (344) Q Consensus 237 ~~~~~vl~~~~~~~g~~~~pl~~~~~d-----~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~ 311 (344) .+.++++ +.|++|+|++.++.+ +||+|++++++++||++|||||++|| ++++|+|++.+.|+++ T Consensus 217 ~~~v~~l-----~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVPp~~l~------~~~s~~e~~~~~f~~~ 285 (376) T protein:vir:78 217 EIAIVPQ-----LEGFNYEEFGTTSVNNSQSFDEVKKLRKEMIDYVASILGIPSSLLH------GDMADLSNNMKAYMEY 285 (376) T ss_pred CcceEEc-----CCCceEEeeccCccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhC------CCCCCHHHHHHHHHHH Confidence 4556666 568999999988865 49999999999999999999999996 3578999999999999 Q ss_pred HHHHHHHHHHH-HHHhhCccceeccccccccC-CC Q lcl|Aclame:pro 312 ELIPLQDRIRE-INGWIGQEVIRFKNYSLDTD-NG 344 (344) Q Consensus 312 ~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d-~g 344 (344) ||.|++.+||+ +|.+|..+.-.+-.|++++- -+ T Consensus 286 ~l~P~~~~ie~~l~~kll~~~~~~~~~~~~~ll~~ 320 (376) T protein:vir:78 286 CIDPLTKKLEDELNAKLFTFSEFLAGEHIKIIHKK 320 (376) T ss_pred HHHHHHHHHHHHHHhhhCCcccceecccchhhccc Confidence 99999999986 99998665322333433321 11 No 97 >protein:vir:9641 Length: 395 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795403;genbank:gi:28876176;genbank:GeneID:1257709 Probab=100.00 E-value=3.1e-41 Score=242.67 Aligned_cols=309 Identities=10% Similarity=-0.017 Sum_probs=191.8 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcC---CceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFG---EPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIY 77 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~ 77 (344) |+....-..... ... +....+++- -++..+...+++.|+.+..+. .-+.|+.++.-.+ .....+.+ T Consensus 1 Mgl~d~~~~~~~-~~~----~~~~~~~~~~~~~~~~~l~~~~v~~~i~~Ia~~-ia~lp~~v~~~~~----~~~~~~~~- 69 (395) T protein:vir:96 1 MGILDFFSFKKS-GTL----SDDDSGSTTSEKLTNVVLKEDALYKCVNYLARI-ISKSTFRIKAPEK----LTENQKDW- 69 (395) T ss_pred CcchhhhcCCCC-ccc----cccccccchhhhcchhhhhhHHHHHHHHHHHHh-hccceeEEEeCCc----cccccchH- Confidence 654432111100 000 111111111 122234455566666554442 3345554321000 00000000 Q ss_pred hcchhhHHhhhcCCCCCH-HHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCceeEEEcC--CceEEE Q lcl|Aclame:pro 78 VKRNILASTFIPHPWLSQ-QDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPS--FNEPTA 154 (344) Q Consensus 78 ~k~n~~~~~~~pnp~~~~-~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~~~~~~~--~~~~~~ 154 (344) ..+...+|||+++. +||+.++.++++.||||+++.|+..+. +.+.........+..++.+.. ...... T Consensus 70 ----~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 140 (395) T protein:vir:96 70 ----LYWINTKANPNQSASQFWVEVVQKLLVDGETLIFVIPGKGIY-----VADAFTQDKKLSGNKFKVSRVQGQTYEKI 140 (395) T ss_pred ----HHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEcCCcee-----cCCccccccccccceeeeeeeccceeeeE Confidence 11233589999886 567788899999999999999986432 222222222223344444432 233567 Q ss_pred EecccEEEecCCCCCCCcccccchhhhHHHH------HHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 155 FAPGSVFHLLEPDINQELYGLPEYLSALNSA------WLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENM 228 (344) Q Consensus 155 ~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i------~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~ 228 (344) ++++||||+|...+....++.+++.+....+ .....+.+|..++|+||+.|++++.+++.. +.+..++.| T Consensus 141 ~~~~dvih~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 216 (395) T protein:vir:96 141 FTFDQVIYLKNDNSDLMLKVESLWEEYGELLGHVINNQKIANQIRFTMTPPKDKVRERAQENSDGGR----QPKSDKDFF 216 (395) T ss_pred eccCceEEecccCCccccccccccchHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeccCchh----hHHHHHHHH Confidence 9999999999876554455555444443333 223345578899999999999999876533 234444455 Q ss_pred HHhhccc--ccccccccCCCCccccceeeeccCChhHHHHHHHHHhh------HHHHHHHhcCChHHhcccccccccccc Q lcl|Aclame:pro 229 VKSKGRN--NFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKAS------AADLLDAHRIPFQLMGGKPENVGSLGD 300 (344) Q Consensus 229 ~~~~g~~--n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~------~~~I~~~fgVPp~llG~~~~~~~~~~n 300 (344) ++..+.. +.+.++++ ++|++|+|++.++.|+|+++.++++ +++||++|||||++|| ++++| T Consensus 217 ~~~~~~~~~~~~~v~~l-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~~~eIa~~fgVPp~~l~------~~~sn 285 (395) T protein:vir:96 217 KRTIEKIRTESVVGIPV-----TANTNYEEYGSKNTGSVKSYVDDIKKLKDQYMAEFAEMLGIPISLLH------GDIAD 285 (395) T ss_pred HHHHHHhhcCCcceEEc-----cCCceeEecccChhhhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhc------CCCcc Confidence 4444332 33445555 5799999999999999999998876 5899999999999996 46789 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCC---C Q lcl|Aclame:pro 301 IEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDN---G 344 (344) Q Consensus 301 ~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~---g 344 (344) +|++.+.|+++||.||+.+||+ +|.+|..+..+..+++|+++. + T Consensus 286 ~e~~~~~f~~~~L~P~~~~ie~~l~~~Ll~~~e~~~~~~f~~~~l~~~ 333 (395) T protein:vir:96 286 NQKNYELLLEGPIESLITNIVDGLEYAIFDKSETLEGSFIKVTGLKNY 333 (395) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhcCceeEeecchhcc Confidence 9999999999999999999995 999998765555566777753 2 No 98 >protein:vir:98643 Length: 395 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039921;genbank:gi:126011096;genbank:GeneID:4818479 Probab=100.00 E-value=2.2e-41 Score=243.45 Aligned_cols=315 Identities=9% Similarity=0.000 Sum_probs=198.3 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) |+....-..... ...+... ....++---.+..+...+++.|+....+. .-+.|+.++. ... ....... T Consensus 1 MGlf~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~I~~ia~~-iA~lp~~~~~------~~~--~~~~~~~- 68 (395) T protein:vir:98 1 MGILDFFSFKKS-GTLSDDD-SGSTTSEKLTNVVLKEDALYKCVNYLARI-ISKSTFRLKT------PEK--LTENQKD- 68 (395) T ss_pred CcchhhhcCCCc-ccccccc-cchhhhhhcchhhhhhHHHHHHHHHHHHH-HhhCceeEEe------cCC--cccccch- Confidence 554432211111 0000000 00111111122234445555555544432 3334443221 100 0000000 Q ss_pred hhhHHhhhcCCCCCH-HHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeec-cccCceeEEEcC--CceEEEEe Q lcl|Aclame:pro 81 NILASTFIPHPWLSQ-QDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRR-GVEEDVYWWVPS--FNEPTAFA 156 (344) Q Consensus 81 n~~~~~~~pnp~~~~-~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~-~~~~~~~~~~~~--~~~~~~~~ 156 (344) -.-+...+|||+++. +||+.++.++++.||||++++|+..+. ++..++.. ...+..++.+.. .+-..+++ T Consensus 69 ~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (395) T protein:vir:98 69 WLYWINTKANPNQSASQFWVEVIQKLLVDGETLIFVIPGKGIY------VADSFTQDKKISGSQFKVSRVQGQTYEKTFT 142 (395) T ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeCCcee------cCCcccccccccCcccceeeecCceeeeEec Confidence 111234589999986 566778899999999999999876432 22223322 223333443332 23356899 Q ss_pred cccEEEecCCCCCCCcccccchhhhHHHHH--HHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 157 PGSVFHLLEPDINQELYGLPEYLSALNSAW--LNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGR 234 (344) Q Consensus 157 ~~eIih~~~~~~~~~~~G~sp~~~~~~~i~--~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~ 234 (344) ++||||+|..++....++.+++.....++. +......+..+++.++..+++++.......++++.++.++.+++..+. T Consensus 143 ~~evih~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (395) T protein:vir:98 143 FDQVIYLKNDNSDLMSKVESLWEEYGELLGHVINNQKIANQIRFTMIPPKDKVRERAQENSDGGRQSKSDKDFFKRTVEK 222 (395) T ss_pred CccEEEecCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCcHHHHHHHHHHHHHHHhh Confidence 999999998765544555555555555444 334445567789999999999988776667788888888888876665 Q ss_pred c--ccccccccCCCCccccceeeeccC------ChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHH Q lcl|Aclame:pro 235 N--NFKNLFLYAPQGKADGIKIIPLSE------VATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAK 306 (344) Q Consensus 235 ~--n~~~~~vl~~~~~~~g~~~~pl~~------~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~ 306 (344) . |.+.++++ +.|++|+|++. .++++||++++++++++||++|||||++|| ++++|+|++.+ T Consensus 223 ~~~~~~~v~~l-----~~g~~~~~l~~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVP~~~l~------~~~sn~e~~~~ 291 (395) T protein:vir:98 223 IRTESVVGIPV-----TANTNYEEYGSKNTGAVKSYVDDIKKLKDQYMAEFAEMLGIPISLLH------GDIADNQKNYE 291 (395) T ss_pred hhcCCcceeec-----CCCceeEecccccccccChhHHHHHHHHHHHHHHHHHHhCCCHHHhc------CCcccHHHHHH Confidence 3 34445555 57899999985 466789999999999999999999999996 46889999999 Q ss_pred HHHHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 307 VFVRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 307 ~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) .|+++||.|++.+||+ ||.+|..+..+..+++|+|+.= T Consensus 292 ~f~~~tl~P~~~~ie~~l~~kll~~~~~~~g~~f~~~~l 330 (395) T protein:vir:98 292 LLLEGPIESLITNIVDGLEYAIFDKSETLQGSFIKVTGL 330 (395) T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhhcCcceeeehhh Confidence 9999999999999986 9999877654445566776532 No 99 >protein:vir:4089 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510984;swissprot:trembl:q8w606;genbank:gi:17488506;uniprot:Q8W606;genbank:GeneID:1260314 Probab=100.00 E-value=1.8e-40 Score=238.50 Aligned_cols=309 Identities=13% Similarity=0.011 Sum_probs=186.9 Q ss_pred CCCCCCCCCCcchhhccccccc-eeEEEcCC--ceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPK-MEAFTFGE--PVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIY 77 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~-~~~f~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~ 77 (344) |.-+......-.....+..... +...++.+ .+..+...+++.|+....+. .-+.|+.++. .+. .+. T Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~v~~Ia~~-ia~~p~~~~~------~~~----~~~ 69 (395) T protein:vir:40 1 MGFKSWVSGFFNEEQRTLNLTDTVWCSIPSEKLKELSIKKWAIDSCANKIANT-LSCAEVLTYE------KGE----EVR 69 (395) T ss_pred CchHHHHHhhhcccccccccccchhhccccccchhhhhhhHHHHHHHHHHHHH-HhhCceeecc------CCc----ccc Confidence 8775543222221111111100 00011111 11223344455555444432 3334443211 000 011 Q ss_pred hcchhhHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeec-cccCceeEEEcCCc--eEE Q lcl|Aclame:pro 78 VKRNILASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRR-GVEEDVYWWVPSFN--EPT 153 (344) Q Consensus 78 ~k~n~~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~-~~~~~~~~~~~~~~--~~~ 153 (344) .. ...++..+|||++++. ||+.++.+++++||||+++.++.. ++.+...... ......|+.+..++ -.. T Consensus 70 ~~-~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 142 (395) T protein:vir:40 70 KK-NWYMFNVEANQNQNATEFWKKAIYKLVYDNEALIFMQDEYI------YVADSFTKNDKSLYENTYTEVTLKDLTLKK 142 (395) T ss_pred ch-HHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEecCce------eecCCccccccccccceeeeeeecCceeee Confidence 11 1123445899999975 567788999999999999988753 2222222111 11223344333332 346 Q ss_pred EEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHh-h Q lcl|Aclame:pro 154 AFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKS-K 232 (344) Q Consensus 154 ~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~-~ 232 (344) .|+++||||+|........++.+.+......+. .......+.|+.++++++.. ...+++++.+++++.|++. . T Consensus 143 ~~~~~evih~r~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~ 216 (395) T protein:vir:40 143 EFKESEVLHLTLNNESIKSIIDGFYLLYGDLLT-----AAVNKYKKLNSRKIIVKLKA-MFGQTPEAEEKLRLMLSERMK 216 (395) T ss_pred eeccccEEEeecCCCCccccchhHHHHHHHHHH-----HHHHHHHhcCCCCceEEEec-ccCCCHHHHHHHHHHHHHHHH Confidence 799999999995432222222222222222222 22233344566666666654 4568999999999999765 4 Q ss_pred c-ccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhH---HHHHHHhcCChHHhccccccccccccHHHHHHHH Q lcl|Aclame:pro 233 G-RNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASA---ADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVF 308 (344) Q Consensus 233 g-~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~---~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f 308 (344) | .+|+++++++ ++|++|+|++++++|+||+|+++++. ++||++|||||++|| ++++|++++.+.| T Consensus 217 ~~~~~~~~~~vl-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~Ia~~fgVPp~~l~------~~~sn~e~~~~~f 285 (395) T protein:vir:40 217 KFLAEGDSALPV-----EDGMEIDELAGDSKIAESRDIKKMIDDVFEMVANSFNIPLGLAK------GDTVGLSEQVNSF 285 (395) T ss_pred HhhccCCceeec-----CCCceEEeccCChhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhc------CCCcCHHHHHHHH Confidence 4 3678888888 57899999999999999999999985 799999999999996 3578999999999 Q ss_pred HHHHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 309 VRNELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 309 ~~~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +++||.|++++||+ +|.+|..+..+..+++++||-- T Consensus 286 ~~~~L~P~~~~ie~~l~~kLl~~~~~~~g~~i~fd~~ 322 (395) T protein:vir:40 286 LMFSINPIAEMFTDEGNRKFYGRDSVLERTYMKLDTT 322 (395) T ss_pred HHHHHHHHHHHHHHHHHHhcCChhhhcCCceEEEech Confidence 99999999999985 9999977544445566666643 No 100 >protein:vir:93867 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764264;genbank:gi:115315577;genbank:GeneID:5141561 Probab=100.00 E-value=1.8e-39 Score=233.06 Aligned_cols=289 Identities=12% Similarity=0.080 Sum_probs=179.9 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) |.-..+.+.-......+.. .....|.+....+....++.|+....+. +-+.|+.++.. .+...........+. T Consensus 1 Mg~f~~~~~f~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~i~~Ia~~-iA~lp~~~~~~---~~~~~~~~~~~~~~~ 73 (378) T protein:vir:93 1 MNLFGKVVSFSRGKLNNDT---QRVTAWQNEAVEYTSAFVTNIHNKIANE-ITKVEFNHVKY---KKSDVGSDTLISMAG 73 (378) T ss_pred CccchhhhhhhccccCCCc---ceeeecccchhHHHHHHHHHHHHHHHhh-hhhCceeeEEE---ccccccccccccccc Confidence 7766654422111111111 1112222222222222334444333332 33334322100 000000000011111 Q ss_pred hhhH--HhhhcCCCCCH-HHHHHHHHHHHhcCCceEEEeeCC-CCceEEEEEeCcceeeccccCceeEEEcCCceEEEEe Q lcl|Aclame:pro 81 NILA--STFIPHPWLSQ-QDFSRFVLDFLVFGNAFLEKRYST-TGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFA 156 (344) Q Consensus 81 n~~~--~~~~pnp~~~~-~~~~~~~~d~ll~Gnay~~~~r~~-~G~~~~L~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (344) ..+. ...+|||+|+. +||+.++.+++++||||++++|+. .|+++.++|. +...+|+ T Consensus 74 ~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~i~~~~~~~~g~~~~l~~~--------------------~~~~~~~ 133 (378) T protein:vir:93 74 SDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGELLDLLFA--------------------DDKKEYK 133 (378) T ss_pred chHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCceEEEEEec--------------------CCeeEec Confidence 2222 23479999987 566788899999999999988764 4677666553 2235688 Q ss_pred cccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHH----Hhh Q lcl|Aclame:pro 157 PGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMV----KSK 232 (344) Q Consensus 157 ~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~----~~~ 232 (344) ++||||+|.+ .++..|.|++..+++++. .++++| .++|+|+++ +.+++++.++++++|+ +.. T Consensus 134 ~~diih~r~~--~~~~~~~s~l~~~~~~i~----------~~~~~~-~~~g~l~~~-~~l~~~~~~~~~~~~~~~~~~~~ 199 (378) T protein:vir:93 134 TEELVRLTSP--FYINEDTSILDNALASIQ----------TKLEQG-KLRGLLKIN-AFLDIDNTQEYREKALTTIKNMQ 199 (378) T ss_pred cceeEEecCc--cccchhhHHHHHHHHHHH----------HHHhcC-cccceeeeC-CcCCHHHHHHHHHHHHHHHHHhh Confidence 9999999964 466779999888776653 355666 589999876 4677776666665554 445 Q ss_pred cccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHH Q lcl|Aclame:pro 233 GRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNE 312 (344) Q Consensus 233 g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~ 312 (344) +++|+++++++ +.|++|+|++.+++++|+ +..++++++||++|||||.+|+ +++.|++...|++.| T Consensus 200 ~~~~~~~~~~l-----~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~--------g~~~e~~~~~f~~~t 265 (378) T protein:vir:93 200 EGSSYNGLTPV-----DNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL--------GTATQEQQIYFYNST 265 (378) T ss_pred cccccccceEc-----CCCceEEEccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhc--------CCcHHHHHHHHHHHH Confidence 77888889998 568999999999999997 5568999999999999999984 134588999999999 Q ss_pred HHHHHHHHHH-HHHhhCccceecc------ccccccCCC Q lcl|Aclame:pro 313 LIPLQDRIRE-INGWIGQEVIRFK------NYSLDTDNG 344 (344) Q Consensus 313 l~P~~~~ie~-ln~~L~~~~irf~------~y~l~~d~g 344 (344) |.|++++||+ ||.+|..+-.|-. ..+++||.- T Consensus 266 l~P~~~~ie~~l~~kLl~~~er~~~~~~~~~~~~~fd~~ 304 (378) T protein:vir:93 266 IIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQ 304 (378) T ss_pred HHHHHHHHHHHHHhhcCChhHhhhhhhcccccceeeccc Confidence 9999999986 9999976432211 112333322 No 101 >protein:vir:1661 Length: 378 # NCBI annotation: unknown # Family: family:all:2379 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044950;genbank:gi:9629657;genbank:GeneID:1261302 Probab=100.00 E-value=5.5e-39 Score=230.33 Aligned_cols=289 Identities=12% Similarity=0.073 Sum_probs=177.9 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) |.--.+-+.-......+.. -...+|......+....++.|+....+. +-+.|+.++.. .+...........+. T Consensus 1 Mg~f~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~i~~Ia~~-iA~l~~~~~~~---~~~~~~~~~~~~~~~ 73 (378) T protein:vir:16 1 MNLFGKVVSFSRGKLNNDT---QRVTAWQNEAVEYTSAFVTNIHNKIANE-ITKVEFNHVKY---KKSDVGSDTLISMAG 73 (378) T ss_pred CccchhhhhhhcccccCCc---ceeeecccchhhHHHHHHHHHHHHHHhh-hhhCceeEEEE---ccccccccccccccc Confidence 7666544321111100110 0112222221222222234444443332 22333321100 000000000000111 Q ss_pred hhhH--HhhhcCCCCCH-HHHHHHHHHHHhcCCceEEEeeCCC-CceEEEEEeCcceeeccccCceeEEEcCCceEEEEe Q lcl|Aclame:pro 81 NILA--STFIPHPWLSQ-QDFSRFVLDFLVFGNAFLEKRYSTT-GKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFA 156 (344) Q Consensus 81 n~~~--~~~~pnp~~~~-~~~~~~~~d~ll~Gnay~~~~r~~~-G~~~~L~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (344) ..+. ...+|||+|+. +||+.++.++++.||||++++|+.. |+++.++|.. ....|+ T Consensus 74 ~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~d~~~g~~~~l~~~~--------------------~~~~~~ 133 (378) T protein:vir:16 74 SDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGELLDLLFAD--------------------DKKEYK 133 (378) T ss_pred chHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCceEEEEEecC--------------------CeeEec Confidence 1122 23479999987 4677888999999999999988753 6666665532 234678 Q ss_pred cccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHH----HHhh Q lcl|Aclame:pro 157 PGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENM----VKSK 232 (344) Q Consensus 157 ~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~----~~~~ 232 (344) ++||||+|.+ .++..|.|++..+.+++. .++++| .++|+|+++ ..+++++.++++++| ++.. T Consensus 134 ~~diih~r~~--~~~~~~~s~l~~~~~~i~----------~~~~~~-~~~g~l~~~-~~l~~~~~~~~~~~~~~~~~~~~ 199 (378) T protein:vir:16 134 PEELVRLTSP--FYINEDTSILDNALASIQ----------TKLEQG-KLRGLLKIN-AFLDIDNTQEYREKALTTIKNMQ 199 (378) T ss_pred ccceEEecCc--cCccchhHHHHHHHHHHH----------HHHhcC-ccceeeEeC-CcCCHHHHHHHHHHHHHHHHHhh Confidence 9999999964 456678999888877653 234444 688999876 456776655555555 4446 Q ss_pred cccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHH Q lcl|Aclame:pro 233 GRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNE 312 (344) Q Consensus 233 g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~ 312 (344) +++|+++++++ ++|++|++++.+++++|+.+ .++++++||++|||||.+|+ +++.|++.+.|+++| T Consensus 200 ~~~~~g~~~vl-----~~g~~~~~l~~~~~~~~~~~-~~~~~~~Ia~~fgVPp~~l~--------g~~~e~~~~~f~~~t 265 (378) T protein:vir:16 200 EGSSYNGLTPV-----DNKTEIVELKKDYSVLNKDE-IDLIKSELLTGYFMNENILL--------GTASQEQQIYFYNST 265 (378) T ss_pred cccccccceEc-----CCCceEEEccCChhhhhHHH-HHHHHHHHHHHhCCCHHHhc--------CCchHHHHHHHHHHH Confidence 77889999999 56899999999999999855 57999999999999999984 134588999999999 Q ss_pred HHHHHHHHHH-HHHhhCccceeccc------cccccCCC Q lcl|Aclame:pro 313 LIPLQDRIRE-INGWIGQEVIRFKN------YSLDTDNG 344 (344) Q Consensus 313 l~P~~~~ie~-ln~~L~~~~irf~~------y~l~~d~g 344 (344) |.|++++||+ ||.+|..+..|-.. .+++|+.= T Consensus 266 l~P~~~~ie~~l~~kLl~~~e~~~~~~~~~~~~~~f~~~ 304 (378) T protein:vir:16 266 IIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQ 304 (378) T ss_pred HHHHHHHHHHHHHhhcCChhhhhhhhhcccccceeeccc Confidence 9999999985 99999765332111 12333322 No 102 >protein:vir:94002 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764318;genbank:gi:115315632;genbank:GeneID:5176589 Probab=100.00 E-value=7.4e-39 Score=229.62 Aligned_cols=289 Identities=13% Similarity=0.094 Sum_probs=178.0 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) |.-..+.+.-......+... ...++-+-........++.|+.+..+. +-+.|+.+... .+...........+. T Consensus 1 Mg~f~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~v~~IA~~-iA~lp~~~~~~---~~~~~~~~~~~~~~~ 73 (378) T protein:vir:94 1 MNLFGKVVSFSRGKLNNDTQ---RVTAWQNEAVEYTSAFVTNIHNKIANE-ITKVEFNHVKY---KKSDVGSDTLISMAG 73 (378) T ss_pred CCccccchhcccccccCCcc---eeeeeccchhHHHHHHHHHHHHHHHhh-hhhCceeeEEE---cccCccccccccccc Confidence 76665443211111001000 111111100011112233444444332 33334322100 000000000000000 Q ss_pred hhh--HHhhhcCCCCCH-HHHHHHHHHHHhcCCceEEEee-CCCCceEEEEEeCcceeeccccCceeEEEcCCceEEEEe Q lcl|Aclame:pro 81 NIL--ASTFIPHPWLSQ-QDFSRFVLDFLVFGNAFLEKRY-STTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFA 156 (344) Q Consensus 81 n~~--~~~~~pnp~~~~-~~~~~~~~d~ll~Gnay~~~~r-~~~G~~~~L~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (344) ..+ +...+|||+|+. +||+.++.+++++||||+++++ +..|+++.++|.. ...+|+ T Consensus 74 ~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~~~~~g~~~~l~p~~--------------------~~~~~~ 133 (378) T protein:vir:94 74 SDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD--------------------DKKEYK 133 (378) T ss_pred chHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeeCCCceEEEEEecC--------------------CeeEee Confidence 111 233579999987 5677888999999999998765 4467777776632 234678 Q ss_pred cccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHH----HHhh Q lcl|Aclame:pro 157 PGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENM----VKSK 232 (344) Q Consensus 157 ~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~----~~~~ 232 (344) ++||||+|.+ .++..|+||+..+++++.. ++++| .|+|+|+++ ..+++++.++++++| ++.. T Consensus 134 ~~diiH~~~~--~~~~~g~s~l~~~~~~i~~----------~~~~~-~~~gil~~~-~~l~~~~~~~~~~~~~~~~~~~~ 199 (378) T protein:vir:94 134 PEELVRLTSP--FYINEDTSILDNALASIQT----------KLEQG-KLRGLLKIN-AFLDIDNTQEYREKALTTIKNMQ 199 (378) T ss_pred eeeeEEecCc--CCccchhHHHHHHHHHHHH----------HHhcc-cccceeeeC-CcCCHHHHHHHHHHHHHHHHHhh Confidence 9999999965 4677899999988887643 34454 689999876 467777665555555 4445 Q ss_pred cccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHH Q lcl|Aclame:pro 233 GRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNE 312 (344) Q Consensus 233 g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~ 312 (344) +++|+++++++ +.|++|+|++.+++++|+ +.+++++++||++|||||.+|+. ++.+++.+.|+++| T Consensus 200 ~~~~~g~~~vl-----~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVP~~~l~~--------~~se~~~~~f~~~t 265 (378) T protein:vir:94 200 EGSSYNGLTPV-----DNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG--------TASQEQQIYFYNST 265 (378) T ss_pred cccccccceec-----CCCceEEEccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhcC--------ChHHHHHHHHHHHH Confidence 67888899998 568999999999999997 56689999999999999999841 23478999999999 Q ss_pred HHHHHHHHHH-HHHhhCccceecccc------ccccCCC Q lcl|Aclame:pro 313 LIPLQDRIRE-INGWIGQEVIRFKNY------SLDTDNG 344 (344) Q Consensus 313 l~P~~~~ie~-ln~~L~~~~irf~~y------~l~~d~g 344 (344) |.|++.+||+ +|.+|..+-.|-.++ +++||.- T Consensus 266 L~P~~~~ie~~l~~~Ll~~~er~~g~~~~~~~~~~f~~~ 304 (378) T protein:vir:94 266 IIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQ 304 (378) T ss_pred HHHHHHHHHHHHHhhcCChhHhhhhhhcccccceeecch Confidence 9999999985 999997653321111 2334322 No 103 >protein:vir:858 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047117;genbank:gi:9630570;genbank:GeneID:1261758 Probab=100.00 E-value=1.5e-36 Score=216.96 Aligned_cols=286 Identities=13% Similarity=0.070 Sum_probs=174.1 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhh-hh--hhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVH-HS--SPIY 77 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~-~~--~~i~ 77 (344) |+.-.+.+.....+..... ...|+..+....+....++.|+....+. +-+.|+.++ +.+.. +. .... T Consensus 1 M~~f~k~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~v~~ia~~-iA~lp~~~~------~~~~~~~~~~~~~~ 70 (378) T protein:vir:85 1 MNLFGKVVSFSRGKLNNDT---QRVTAWQNEAVEYTSAFVTNIHNKIANE-ITKVEFNHV------KYKKSDVGSDTLIS 70 (378) T ss_pred CchhhhhhhhhhcccccCC---cceeeeeccchhhhhHHHHHHHHHHHHh-HhhCceeEE------EEeccccccccccc Confidence 8876543222111111111 1233332222223333455565554443 444554331 11100 00 0000 Q ss_pred hcchh--hHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEe-eCCCCceEEEEEeCcceeeccccCceeEEEcCCceEE Q lcl|Aclame:pro 78 VKRNI--LASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKR-YSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPT 153 (344) Q Consensus 78 ~k~n~--~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~-r~~~G~~~~L~pl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (344) .+-.. -+...+|||+|++. ||+.++.++++.||||++++ ++..|++..+++. ++ .. T Consensus 71 ~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~~~~~-------------------~~-~~ 130 (378) T protein:vir:85 71 MAGSDLDEVLNWSYKGEHNSMEFWQKVIKKLLCTRYVDLYPIFDSETGELLDLLFA-------------------ND-KK 130 (378) T ss_pred cccchHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEeecCCCceEEEEEec-------------------CC-CE Confidence 01111 12345799999875 56778899999999999864 4555655443322 22 24 Q ss_pred EEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHH---- Q lcl|Aclame:pro 154 AFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMV---- 229 (344) Q Consensus 154 ~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~---- 229 (344) .+.++||||++.+...++ +.+.+..+.+++ ..++++| .|+|+|+++ +.+++++.++++++|+ T Consensus 131 ~~~~~dvih~~~~~~~~~--~~~~~~~a~~~~----------~~~~~~~-~~~g~l~~~-~~l~~~~~~~~~~~~~~~~~ 196 (378) T protein:vir:85 131 EYKPEELVRLVSPFYINE--DTSILDNALASI----------QTKLEQG-KLRGLLKIN-AFLDIDNTQEYREKALATIK 196 (378) T ss_pred EEcccceEEEecCcCccc--hhhHHHHHHHHH----------HHHHhcC-CcceEEEeC-CcCCHHHHHHHHHHHHHHHH Confidence 577899999985432222 233333333322 2344554 789999876 4678877776666664 Q ss_pred HhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHH Q lcl|Aclame:pro 230 KSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFV 309 (344) Q Consensus 230 ~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~ 309 (344) +..+++|+++++++ ++|++|+|++++++++++ +..++++++||++|||||++|+ +++.|++...|+ T Consensus 197 ~~~~~~~~g~~~vl-----~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~--------~s~~e~~~~~f~ 262 (378) T protein:vir:85 197 NMQEGSSYNGLTPV-----DNKTEIVELKKDYSVLNK-DEIELIKSELLTGYFMNENILL--------GTATQEQQIYFY 262 (378) T ss_pred Hhhcccccccceec-----CCCceEEeccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhc--------CCchHHHHHHHH Confidence 44577889999998 568999999999999997 5678999999999999999984 234588999999 Q ss_pred HHHHHHHHHHHHH-HHHhhCccceecccc------ccccCCC Q lcl|Aclame:pro 310 RNELIPLQDRIRE-INGWIGQEVIRFKNY------SLDTDNG 344 (344) Q Consensus 310 ~~~l~P~~~~ie~-ln~~L~~~~irf~~y------~l~~d~g 344 (344) ++||.||+.+||+ ||.+|..+..|...| +++|+.- T Consensus 263 ~~tL~P~~~~ie~~l~~kLl~~~er~~~~~~~~~~~~~f~~~ 304 (378) T protein:vir:85 263 NSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQ 304 (378) T ss_pred HHHHHHHHHHHHHHHHhhcCChhhhhhhhhccccceeeecch Confidence 9999999999996 999997653332211 2334432 No 104 >protein:vir:94869 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762515;genbank:gi:115304214;genbank:GeneID:5141182 Probab=100.00 E-value=1.2e-36 Score=217.48 Aligned_cols=286 Identities=13% Similarity=0.074 Sum_probs=177.0 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhh---hhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVH---HSSPIY 77 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~---~~~~i~ 77 (344) |+...+.+...-.+.... ...+|+.-+....+....++.|+....+. +-+.|+..+ +.+.. ...... T Consensus 1 M~if~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~v~~Ia~~-iA~lp~~~~------~~~~~~~~~~~~~~ 70 (378) T protein:vir:94 1 MNLFGKVVSFSRGKLNND---TQRVTAWQNEAVEYTSAFVTNIHNKIANE-ITKVEFNHV------KYKKSDVGSDTLIS 70 (378) T ss_pred CchhHHhHhhhhcccccC---cceeeeeecchhhhhhHHHHHHHHHHHHh-HhhCceeee------eecccccccccccc Confidence 877775544322111111 12344433332223334456666554443 334554321 11111 011111 Q ss_pred hcchhh--HHhhhcCCCCCH-HHHHHHHHHHHhcCCceEEE-eeCCCCceEEEEEeCcceeeccccCceeEEEcCCceEE Q lcl|Aclame:pro 78 VKRNIL--ASTFIPHPWLSQ-QDFSRFVLDFLVFGNAFLEK-RYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPT 153 (344) Q Consensus 78 ~k~n~~--~~~~~pnp~~~~-~~~~~~~~d~ll~Gnay~~~-~r~~~G~~~~L~pl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (344) .+...+ +...+|||++++ +||+.++.++++.||||+++ .++..|++..+++. .++ . T Consensus 71 ~~~~~l~~lLn~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~~~~~------------------~~~--~ 130 (378) T protein:vir:94 71 MAGSDLDEVLNWSSKGERNSMEFWQKVIKKLLTTRYIDLYPIFDSETGELLDLLFA------------------NDK--K 130 (378) T ss_pred cccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEEe------------------cCc--E Confidence 121222 223479999987 56677889999999999985 45666776555432 122 4 Q ss_pred EEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHH----HHHHHHH Q lcl|Aclame:pro 154 AFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIE----MLRENMV 229 (344) Q Consensus 154 ~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~----~l~~~~~ 229 (344) +|+++||||++.+...++ +.+++..+.+++. ..+++| .++|+|+.+ ..+++++.+ ++++.|+ T Consensus 131 ~~~~~dvih~~~~~~~~~--~~~~~~~~~~~~~----------~~~~~~-~~~g~l~~~-~~l~~~~~~~~~e~~~~~~~ 196 (378) T protein:vir:94 131 EYKPEELVRLTSPFYINE--DTSILDNALASIQ----------TKLEQG-KLRGLLKIN-AFLDIDNTQEYREKALATIK 196 (378) T ss_pred EechhceeeecCcCCccc--chhHHHHHHHHHH----------HHHhhC-CcccceeeC-CcCCHHHHHHHHHHHHHHHH Confidence 578999999996543333 3455555544432 334454 678899876 467766554 4555555 Q ss_pred HhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHH Q lcl|Aclame:pro 230 KSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFV 309 (344) Q Consensus 230 ~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~ 309 (344) +..++.|+++++++ ++|++|+|++++++++++ +..++++++||++|||||++|+. + ..|++...|+ T Consensus 197 ~~~~~~n~~~~~vl-----~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgvPp~~l~g------~--~~e~~~~~f~ 262 (378) T protein:vir:94 197 NMQEGSSYNGLTPV-----DNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG------T--ATQEQQIYFY 262 (378) T ss_pred Hhhcccccccceec-----cCCceEEEccCChHHhhH-HHHHHHHHHHHHHhCCCHHHhcC------C--chHHHHHHHH Confidence 56677888889998 578999999999999997 66789999999999999999841 2 2378889999 Q ss_pred HHHHHHHHHHHHH-HHHhhCccceeccc------cccccCCC Q lcl|Aclame:pro 310 RNELIPLQDRIRE-INGWIGQEVIRFKN------YSLDTDNG 344 (344) Q Consensus 310 ~~~l~P~~~~ie~-ln~~L~~~~irf~~------y~l~~d~g 344 (344) ++||.|++.+||+ ||.+|..+-.+-.+ .+++|+.- T Consensus 263 ~~tl~P~~~~ie~~l~~~Ll~~~e~~~g~~~~~~~~~~f~~~ 304 (378) T protein:vir:94 263 NSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQ 304 (378) T ss_pred HHHHHHHHHHHHHHHHhhcCChhHhhhhhhhcccceeEeecc Confidence 9999999999986 99999764322111 12333322 No 105 >protein:vir:4698 Length: 251 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061630;genbank:gi:9635717;genbank:GeneID:1262980 Probab=100.00 E-value=3.8e-36 Score=214.80 Aligned_cols=231 Identities=15% Similarity=0.153 Sum_probs=156.4 Q ss_pred CCCCCC---CCCCcchhhccccccceeEEEcCC-------ceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhh Q lcl|Aclame:pro 1 MSKKKG---KTPQPAAKTMTASAPKMEAFTFGE-------PVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAV 70 (344) Q Consensus 1 m~~~~~---~~~~~~~~~~~~~~~~~~~f~~~~-------p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 70 (344) |.--++ |...+.......... ...++.+ +..++...+++.|+.+..+. +-+.|+.++. ... T Consensus 1 MglF~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~-iA~lp~~~~~------~~~ 71 (251) T protein:vir:46 1 MGIFYKNEKRDLQYNEDDLQMMVQ--TLPSFQGTKLRQYKDIEAIRHSDIFTAVMMIASD-LARMPIRVTV------NGQ 71 (251) T ss_pred CCccccccccccCCCccchhhhhh--hhccccCcCcceechhhhhccHHHHHHHHHHHHh-HhhCceEEee------Ccc Confidence 774432 222111111111100 1112111 11223344555555544432 3344443321 000 Q ss_pred hhhhhhhhcchh-hHHhhhcCCCCCHH-HHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc--eeEEE Q lcl|Aclame:pro 71 HHSSPIYVKRNI-LASTFIPHPWLSQQ-DFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--VYWWV 146 (344) Q Consensus 71 ~~~~~i~~k~n~-~~~~~~pnp~~~~~-~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~--~~~~~ 146 (344) ...++.. .+....|||+++.. ||+.++.+++++||||++++||..|+|++|+|++|.+|++..+.+ .+|.+ T Consensus 72 -----~~~~~~~~~ll~~~Pn~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~ 146 (251) T protein:vir:46 72 -----INYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFH 146 (251) T ss_pred -----ccccchHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCceEEEEECCCCcEEEEE Confidence 0001111 12335899999875 677888999999999999999999999999999999999876543 23322 Q ss_pred c-----CCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHH Q lcl|Aclame:pro 147 P-----SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDI 221 (344) Q Consensus 147 ~-----~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~ 221 (344) . .++....++++||||+|.++ .++++|+||+.++++++.++.++++|+.++|+||++|+|||++++...+++++ T Consensus 147 ~~~~~~~~g~~~~~~~~diiH~r~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~~e~~ 225 (251) T protein:vir:46 147 QRIDSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKAR 225 (251) T ss_pred EEeccCCcceeEEECCccEEEecCcC-CCCeeecCHHHHHHHHHHHHHHHHHHHHHHHHccCCCcEEEEeCCCCCCHHHH Confidence 2 34667899999999999886 57899999999999999999999999999999999999999998766688899 Q ss_pred HHHHHHHHHh-hcccccccccccCCCCcccccee Q lcl|Aclame:pro 222 EMLRENMVKS-KGRNNFKNLFLYAPQGKADGIKI 254 (344) Q Consensus 222 ~~l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~ 254 (344) +++|+.|++. .|.+|+|++.+ ||.= T Consensus 226 ~~~~~~~~~~~~g~~n~g~~~~--------gm~~ 251 (251) T protein:vir:46 226 DRAREEFPKVLVELNKLGKLSY--------SMNQ 251 (251) T ss_pred HHHHHHHHHHhcCccccccccc--------ccCC Confidence 9999999765 67799998765 2210 No 106 >protein:vir:5249 Length: 437 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852754;genbank:gi:31544029;interpro:IPR006445;uniprot:Q7Y5U6;genbank:GeneID:2753529 Probab=99.59 E-value=9.2e-16 Score=103.01 Aligned_cols=304 Identities=10% Similarity=0.031 Sum_probs=163.4 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) |.+-=.-....+. -........++++-|. -...+.|..+++.+...+.++..-. T Consensus 1 ~~~~D~~~~~~~~---~g~~~~~~~~~~~~~~-----------------------~~~~~~l~a~Y~~~~l~~~~vd~~a 54 (437) T protein:vir:52 1 MKFFDGIKSLALK---LGSKQEQTYYSPSLSL-----------------------TDDLVQLEALWRDNWIANKVCIKRP 54 (437) T ss_pred CchhhhhHhHHhc---CCCccccceeecCccc-----------------------cccHHHHHHHHHhCchhhHHhhcch Confidence 1110000000000 0000001122222221 1223344455555555444443332 Q ss_pred hhhHHhhh----cCC--------------CCCHHHHHHHHHHHHhcCCceEEEeeCC---------CCceEEEEEeCcce Q lcl|Aclame:pro 81 NILASTFI----PHP--------------WLSQQDFSRFVLDFLVFGNAFLEKRYST---------TGKVIRLETSPAKY 133 (344) Q Consensus 81 n~~~~~~~----pnp--------------~~~~~~~~~~~~d~ll~Gnay~~~~r~~---------~G~~~~L~pl~~~~ 133 (344) .++..... .+. +--+..+...+...-++|+||+.+++++ .|.+..|.++++.. T Consensus 55 ~d~~r~~~~i~~~d~~~~~~~~~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~~d~~~~~~pl~~~~~~~~~~v~~~~~ 134 (437) T protein:vir:52 55 EDMVRNWREIYSNDLNSKQLDLFTKFERSLKLRETLTKALQWSSLYGSVGLLVVTDSQNTSAPLKPTERLKRLIILPKWK 134 (437) T ss_pred HHhhcCCceEecCCCCHHHHHHHHHHHHhhcHHHHHHHHHHhcccccceEEEEEecCCCcccccccCCceeEEEEechhh Confidence 22221100 000 0011222223333448999999998875 36788899999887 Q ss_pred eecccc-----------CceeEEEcCCceEEEEecccEEEecC---CCCCCCcccccchhhhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 134 TRRGVE-----------EDVYWWVPSFNEPTAFAPGSVFHLLE---PDINQELYGLPEYLSALNSAWLNESATLFRRKYY 199 (344) Q Consensus 134 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~eIih~~~---~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f 199 (344) +..... ...+|.+.+++....+.++.|||+.. +-+...++|+|.++.+...|.....+.......+ T Consensus 135 v~~~~~~~~dp~s~~fg~p~~y~v~~~~~~~~iH~SRii~~~~~~~~~~~~~~~G~s~le~~~~~i~~~~~~~~~~~~l~ 214 (437) T protein:vir:52 135 ISPTGTKDDDVLSPNFGRYSEYSILGGSQSITVHHSRLIILNANDAPLSDNDIWGVSDLEKIIDVLKRFDSASVNVGDLI 214 (437) T ss_pred ccccccccccccccccCcceEEEEecCCcceeEccceeEEecCccCCCccccccCCchHHHHHHHHHHHHHHHHHHHHHH Confidence 763211 11367787777777899999999964 2345678899999999999999888888888877 Q ss_pred HccCCCceEEEecC--CCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHH Q lcl|Aclame:pro 200 ENGAHAGYIMYVTD--AVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADL 277 (344) Q Consensus 200 ~Ng~~p~gil~~~~--~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I 277 (344) .+...+ ++++++ ..++....+.+++.++......+.++++++.. +-+++.++.+..+ +-+......++| T Consensus 215 ~~~~~~--v~k~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-----~~~~e~~~~~~sg--l~~~l~~~~~~i 285 (437) T protein:vir:52 215 FESKID--IFKIAGLSDKIAAGMENEVASVISAVQEIKSATNSLLLDA-----ENEYDRKELTFTG--LKDLLTEFRNAV 285 (437) T ss_pred HHcCCC--ceecchHHHHhcCCcHHHHHHHHHHHHHhcCCCceEEEcC-----CcceEEEecCcCC--HHHHHHHHHHHH Confidence 765444 344443 12333334455555544333344566777743 2345555544332 224455677899 Q ss_pred HHHhcCChHHh-ccccccccccccHHHHHHHHHH-------HHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 278 LDAHRIPFQLM-GGKPENVGSLGDIEKVAKVFVR-------NELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 278 ~~~fgVPp~ll-G~~~~~~~~~~n~e~~~~~f~~-------~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) |++.+||...| |.. .+++++.++..+.||. ..+.|+++++-+ |-+..+..+ ..+++++|++= T Consensus 286 aaa~~iP~t~L~G~s---~~Glasge~D~~~yyd~i~~~Qe~~l~p~le~l~~~i~~~~~g~~--~~~~~~~f~pL 356 (437) T protein:vir:52 286 AGAADMPVTILFGQS---VSGLASGDEDIQNYHEAIRRLQETRLRPIFEIIDPLICNELFGGL--PADWWFEFVPL 356 (437) T ss_pred HHHhcCchhhhcCcC---cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcceEEeCCc Confidence 99999999876 443 3455667777788876 456666666544 322222222 13455555532 No 107 >protein:vir:79647 Length: 435 # NCBI annotation: PorT # Family: family:all:297 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285520;genbank:gi:148734503;genbank:GeneID:5220005 Probab=99.19 E-value=1.1e-11 Score=80.72 Aligned_cols=303 Identities=8% Similarity=0.026 Sum_probs=145.3 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) |+|||++......= . .+|.-.++.. ....++..-+....|..+++.+...+.++..-. T Consensus 5 m~~~~~~~~~~D~~--~------~~~~~~~g~~--------------~~~~~~~~~~~~~~l~~~Y~~~~l~~~~Vd~~a 62 (435) T protein:vir:79 5 MSDKVKAITKEDGY--N------EIFGSKDGTF--------------RPNAFYMQRAAFKALSQFYEEDGMARRIVDVIP 62 (435) T ss_pred cccccccchhhcch--h------hhhccccccc--------------ccCcccCCcCCHHHHHHHHhcCchhhhhhccch Confidence 99998775533210 0 0111111100 000001111122233444444444333333222 Q ss_pred hhhHHhhh--c------------CCCCCHHHHHHHHHHHHhcCCceEEEee-C---------CCCceEEEEEeCcceeec Q lcl|Aclame:pro 81 NILASTFI--P------------HPWLSQQDFSRFVLDFLVFGNAFLEKRY-S---------TTGKVIRLETSPAKYTRR 136 (344) Q Consensus 81 n~~~~~~~--p------------np~~~~~~~~~~~~d~ll~Gnay~~~~r-~---------~~G~~~~L~pl~~~~~~~ 136 (344) .++..... . ..+--+..+...+....++|.|++.+.. + ..|....|.++++..+.+ T Consensus 63 ed~~r~g~~i~g~~~~~~~~~~~~~l~~~~~l~~a~~~~rl~G~~~i~i~~~d~~~~~~Pl~~~g~i~~i~v~d~~~i~~ 142 (435) T protein:vir:79 63 EEMVTPGFKVDGVKNEKSFKSRWDELRLNAKIIDALSWSRLFGGSAILAVVADNKMLKSPVKPGAQLEDIRVYDRYQITI 142 (435) T ss_pred HHhhcCCceecCCChHHHHHHHHHHhhHHHHHHHHHHhhhccccEEEEEEecCCCCcccccccCCceeeEEeechhhccc Confidence 22211100 0 0011122333344455689998887763 2 234455777888776654 Q ss_pred ccc-----C-----ceeEEEcCCc--eEEEEecccEEEecCC------CCCCCcccccch-hhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 137 GVE-----E-----DVYWWVPSFN--EPTAFAPGSVFHLLEP------DINQELYGLPEY-LSALNSAWLNESATLFRRK 197 (344) Q Consensus 137 ~~~-----~-----~~~~~~~~~~--~~~~~~~~eIih~~~~------~~~~~~~G~sp~-~~~~~~i~~~~~a~~~~~~ 197 (344) ... . -.+|++...+ ....+.++.|||+... .+....+|.|++ +.+...+.....+...... T Consensus 143 ~~~~~dp~sp~fg~P~~y~v~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~e~~~~~l~~~~~~~~~~~~ 222 (435) T protein:vir:79 143 HERETNARSVRYGEPKLYKISPGGDIPEFFVHYSRICIIDGERVSNEKRRQNDGWGASILNKRLIEAIVDYNYCQELATQ 222 (435) T ss_pred hhhccCCcccccCcceEEEEecCCCCCceEEcceeEEEecCCcchhhhccccCcccchHHHHHHHHHHHHHHHHHHHHHH Confidence 321 1 1346665432 3567889999999642 234567899998 5777888887777777777 Q ss_pred HHHccCCCceEEEecC---CCCCHHHHHHHHHHHHHhhcc-cccccccccCCCCccccceeeeccCChhHHHHHHHHHhh Q lcl|Aclame:pro 198 YYENGAHAGYIMYVTD---AVQDRNDIEMLRENMVKSKGR-NNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKAS 273 (344) Q Consensus 198 ~f~Ng~~p~gil~~~~---~~~~~e~~~~l~~~~~~~~g~-~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~ 273 (344) .+...... ++++++ ...+++....++++++..... ++.+.+++.+. ++ +++.++.+..+ +-+..... T Consensus 223 l~~~~~~~--v~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~i~~~---~e--~~e~~~~~lsg--l~~~~~~~ 293 (435) T protein:vir:79 223 LLRRKQQA--VWKARDLALMCDDEEGRYAARLRLAQVDDESGVGKAIGIDAT---DE--EYEVLNSDVSG--VPEFLQEK 293 (435) T ss_pred HHHHhcCc--cccchhHHHhhcCccchHHHHHHHHHHHHhcCCCCceeEecC---Cc--ceEEEecccCC--HHHHHHHH Confidence 55444333 234432 111233344455555433222 23344544321 22 35544443332 34556667 Q ss_pred HHHHHHHhcCChHHh-cccccccccc-ccHHHHHHHHHH-------HHHHHHHHHHHHHHHhhCccceeccccccccCCC Q lcl|Aclame:pro 274 AADLLDAHRIPFQLM-GGKPENVGSL-GDIEKVAKVFVR-------NELIPLQDRIREINGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 274 ~~~I~~~fgVPp~ll-G~~~~~~~~~-~n~e~~~~~f~~-------~~l~P~~~~ie~ln~~L~~~~irf~~y~l~~d~g 344 (344) .++||++.+||...| |..++ ++ ++.+...+.|+. ..+.|.+.++-++. ++=.++.++|++= T Consensus 294 ~~~iaaa~~IP~t~L~G~s~~---glnstgd~d~~~yyd~i~~~Qe~~l~p~l~~l~~li-------~~s~d~~~~f~pL 363 (435) T protein:vir:79 294 IDRIVALTGIHEIIIKNKNTG---GVSASQNTALETFYKLIDRKRVEDYKPILEFLLPFM-------ISETEWSIEFEPL 363 (435) T ss_pred HHHHHhhhCCCeeeeccCCcc---ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hcCCCCeEEeCCC Confidence 889999999999765 55432 33 344555556665 33555554443321 1112333344322 No 108 >protein:vir:94049 Length: 532 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453629;genbank:gi:84662665;genbank:GeneID:5142559 Probab=99.18 E-value=4e-11 Score=77.58 Aligned_cols=326 Identities=9% Similarity=0.013 Sum_probs=161.0 Q ss_pred CCCCCCCCCCcchhhcccc-ccceeEEEcCCceec--cCcchhhhhhhhhccchhh-hccccHHHHHHHHhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTAS-APKMEAFTFGEPVPV--LDRRDILDYVECISNGRWY-EPPVSFTGLAKSLRAAVHHSSPI 76 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~p~~~--~~~~~~~~~~~~~~~~~~~-~~p~~~~~l~~~~~~~~~~~~~i 76 (344) |-+||+..+.....-.+.- .+.+..+...+-... ++.+.-+.-.... ...|+ ...+.-+.|..+++.+.....++ T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~~~l~a~Y~~~~l~r~~V 101 (532) T protein:vir:94 23 VDAKRATHTSLGLATAHEIDPTAYSPYERNAAQNAMAMDYGLQTGRNGRN-ALSFVEATSWPGFPTLALLAQLPEYRTMH 101 (532) T ss_pred hhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccCccccccc-ccccccccccchHHHHHHHHcCchhhhhh Confidence 6655554443332211111 111111221111110 0000000000000 01122 12234456667777777666666 Q ss_pred hhcchhhHHhhhcCC---------------------CCCHHHHHHHHHHHHhcCCceEEEeeCC---------------- Q lcl|Aclame:pro 77 YVKRNILASTFIPHP---------------------WLSQQDFSRFVLDFLVFGNAFLEKRYST---------------- 119 (344) Q Consensus 77 ~~k~n~~~~~~~pnp---------------------~~~~~~~~~~~~d~ll~Gnay~~~~r~~---------------- 119 (344) ..-.++......... +--+..+..++....++|.+++++.... T Consensus 102 d~~aed~~r~~~~i~~~~~~~~~~~~~~~i~~~~~~l~v~~~l~~a~~~~rlyG~a~i~i~v~~~~~~~~~~~p~~l~~~ 181 (532) T protein:vir:94 102 ETPADECVRAWGKITCSSKDELAADKATRITQKLEQYNVRTLVRTVVIHDQAYGGAHVFPHLKMDGDSVPADAPLLLSPS 181 (532) T ss_pred ccchHHHhhCCceEeeCCccccchHHHHHHHHHHHhhhHHHHHHHHHHhhhcccceEEEEEeccCCcccccccccccccc Confidence 544444332111110 0001112222333358999988765322 Q ss_pred ---CCceEEEEEeCcceeeccccC------c-----eeEEEcCCceEEEEecccEEEecCCCC------CCCcccccchh Q lcl|Aclame:pro 120 ---TGKVIRLETSPAKYTRRGVEE------D-----VYWWVPSFNEPTAFAPGSVFHLLEPDI------NQELYGLPEYL 179 (344) Q Consensus 120 ---~G~~~~L~pl~~~~~~~~~~~------~-----~~~~~~~~~~~~~~~~~eIih~~~~~~------~~~~~G~sp~~ 179 (344) .|...+|.++.+..+.+.... . .+|++..+ ..+.++.|||+..... ...++|+|.++ T Consensus 182 ~I~~g~~~~l~vld~~~v~p~~~~~~dp~sp~fg~P~~y~v~~g---~~iH~SRli~f~g~~~p~~~~~~~~~~G~Svlq 258 (532) T protein:vir:94 182 FVQRGCLIGFATIEPMWLSPNAYNATDPTLPSFYKPDSWIATSG---KKIHSSRIHTVVGRPVGDMLKAAYSFRGVSISQ 258 (532) T ss_pred ccccceeeEEEeechheecccccccccccccccCCceeEEEccC---eeeccceEEEecCCCchhhhccccccccccHHH Confidence 234467888888877653211 1 24545433 2577899999874322 23457999999 Q ss_pred hhHHHHHHHHHHHHHHHHHHHccCCCceEEEec-CCCCCHHHHHHHHHHHHHhh-cccccccccccCCCCccccceeeec Q lcl|Aclame:pro 180 SALNSAWLNESATLFRRKYYENGAHAGYIMYVT-DAVQDRNDIEMLRENMVKSK-GRNNFKNLFLYAPQGKADGIKIIPL 257 (344) Q Consensus 180 ~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~-~~~~~~e~~~~l~~~~~~~~-g~~n~~~~~vl~~~~~~~g~~~~pl 257 (344) .+...+.....+............... +++. ...++.+..+++.++++... +-+|.+ ++++.. +.-+|+.+ T Consensus 259 ~~~~~l~~~~~t~~~~~~l~~~~~~~v--~k~~~a~~ls~~~~~~~~~r~~~~~~~~~n~g-~~~id~----~~e~~e~~ 331 (532) T protein:vir:94 259 LAMPYVDNWLRTRQSVSDTVKQFSMTN--LATDMAQLLAPGGAQSLDARLQLFNLYRDNRN-IGALDK----GTEEIQQT 331 (532) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCce--eeechHHhhcchhHHHHHHHHHHHHhhcCCcc-ceEEcC----CCceeEEE Confidence 999999888877777776555543332 3332 13456667788888887543 334444 444432 12345544 Q ss_pred cCChhHHHHHHHHHhhHHHHHHHhcCChHH-hcccccccccc-ccHHHHHHHHHH-------HHHHHHHHHHHH-HHHhh Q lcl|Aclame:pro 258 SEVATKDDFFNIKKASAADLLDAHRIPFQL-MGGKPENVGSL-GDIEKVAKVFVR-------NELIPLQDRIRE-INGWI 327 (344) Q Consensus 258 ~~~~~d~qf~e~~~~~~~~I~~~fgVPp~l-lG~~~~~~~~~-~n~e~~~~~f~~-------~~l~P~~~~ie~-ln~~L 327 (344) +.+..+ +-++.....++||++.+||... +|..+. ++ ++-+...+.|+. ..+.|++++|-+ |-... T Consensus 332 ~~~lsg--l~~~l~~~~~~iAaa~~IP~t~LfG~sp~---GlnstGe~D~~~yyd~I~s~Qe~~l~p~le~l~~~l~~s~ 406 (532) T protein:vir:94 332 NTPLSG--LDSLQAQSQEQMAAVSHIPLVKLLGITPN---GLNASSDGEIRVWYDFIAGYQATNLTPLMEWIIDLIQLSE 406 (532) T ss_pred ecccCC--HHHHHHHHHHHHHhHhCCCeeeeecCCcc---cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 433332 2344566677899999999984 575433 33 333545555655 457777777655 32222 Q ss_pred CccceeccccccccCCC Q lcl|Aclame:pro 328 GQEVIRFKNYSLDTDNG 344 (344) Q Consensus 328 ~~~~irf~~y~l~~d~g 344 (344) +..+ -.+++++|++= T Consensus 407 ~g~~--~~d~~~~f~pL 421 (532) T protein:vir:94 407 YGQI--DPGLAWEWSPL 421 (532) T ss_pred cCCC--CCCceEEeCCC Confidence 2221 12344444422 No 109 >protein:vir:79511 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468055;genbank:gi:157265497;genbank:GeneID:5600628 Probab=99.09 E-value=2.1e-10 Score=73.59 Aligned_cols=316 Identities=12% Similarity=0.024 Sum_probs=168.3 Q ss_pred CCCCCCCCCCcchhh--c-cccccce-------eEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKT--M-TASAPKM-------EAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAV 70 (344) Q Consensus 1 m~~~~~~~~~~~~~~--~-~~~~~~~-------~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 70 (344) |+||++|...-+... . .++++.+ ....+++-.+.- ...++. +. + .+ .|.+.+...+ T Consensus 1 m~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~iLr----~~-~-------~~-~ly~~m~~D~ 66 (448) T protein:vir:79 1 MAKRGRKPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDRE-FDELLQ----GK-D-------GL-LVYHKMLSDG 66 (448) T ss_pred CCCCCCCCccccCcccccccccchhhhhhhhhhcccccccccccc-hhHhhc----cc-c-------ch-HHHHHHhhCh Confidence 999998854322221 1 1111110 111111110000 000110 00 0 11 1223334577 Q ss_pred hhhhhhhhcchhhHH---hhhcCCCCC---------------------HHHHHHH---HHHHHhcCCceEEEeeC--CCC Q lcl|Aclame:pro 71 HHSSPIYVKRNILAS---TFIPHPWLS---------------------QQDFSRF---VLDFLVFGNAFLEKRYS--TTG 121 (344) Q Consensus 71 ~~~~~i~~k~n~~~~---~~~pnp~~~---------------------~~~~~~~---~~d~ll~Gnay~~~~r~--~~G 121 (344) |..+|+..++..+.. .+.|+.-.. +..|..+ ++|.+++|-+++|++.. ..| T Consensus 67 hi~s~l~~Rk~av~~~~w~v~p~~~~~~~~~~ae~v~~~l~~~~~~~~~~~f~~~~~~~lda~~~G~s~~Eivw~~~~~g 146 (448) T protein:vir:79 67 TVKNALNYIFGRIRSAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIYENAYIYGMAAGEIVLTLGADG 146 (448) T ss_pred HHHHHHHHHHHHHhcCCceEecCCCCHHHHHHHHHHHHHhhhhhhhhccCCHHHHHHHHHHhhhhcceeEEEEeeecCCC Confidence 777777655544332 122221111 0113333 45667999999999864 345 Q ss_pred c--eEEEEEeCcce---eeccccCceeEEEcCC--------ceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHH Q lcl|Aclame:pro 122 K--VIRLETSPAKY---TRRGVEEDVYWWVPSF--------NEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLN 188 (344) Q Consensus 122 ~--~~~L~pl~~~~---~~~~~~~~~~~~~~~~--------~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~ 188 (344) . +..|.+.++.. .....++...+....+ .....++..-++|.... ..+..||.+.+..+.-..... T Consensus 147 ~~~~~~l~~r~~~~~~~f~~~~d~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~-~~g~p~g~gLlr~~~w~~~fK 225 (448) T protein:vir:79 147 KLILDKIVPIHPFNIDEVLYDEEGGPKALKLSGEVKGGSQFVSGLEIPIWKTVVFLHN-DDGSFTGQSALRAAVPHWLAK 225 (448) T ss_pred ceecccccccCCccccceeeecCCceEEeecCCcccccccCCCccccccceEEEEecC-ccCCcccchhHHHHHHHHHHH Confidence 4 45677777763 3333444333332221 12234577778887654 345679999999999999999 Q ss_pred HHHHHHHHHHHHccCCCceEEEecCC-CCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHH Q lcl|Aclame:pro 189 ESATLFRRKYYENGAHAGYIMYVTDA-VQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFF 267 (344) Q Consensus 189 ~~a~~~~~~~f~Ng~~p~gil~~~~~-~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~ 267 (344) ..+.++...|.+.-+.|--|.+++.+ ..++++++++.+...+..++.+++- |+ +.|++++-++....-.++. T Consensus 226 ~~~~~~w~~f~E~yG~P~~vgky~~ga~~~~~~~~~l~~av~~i~~g~~a~~--ii-----P~~~~ie~~ea~~~~~~~~ 298 (448) T protein:vir:79 226 RALILLINHGLERFMIGVPTLTIPKSVRQGTKQWEAAKEIVKNFVQKPRHGI--IL-----PDDWKFDTVDLKSAMPDAI 298 (448) T ss_pred HHHHHHHHHHHHHcCCceEEEecCCCCCcCHHHHHHHHHHHHHHhcCCceEE--Ee-----cCCceEEEEecCCCcccHH Confidence 99999999999998888877777533 3356778888887777655555542 22 3445555444444445566 Q ss_pred HHHHhhHHHHHHHhcCChHHhccccc--c-ccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceecc-----cc- Q lcl|Aclame:pro 268 NIKKASAADLLDAHRIPFQLMGGKPE--N-VGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFK-----NY- 337 (344) Q Consensus 268 e~~~~~~~~I~~~fgVPp~llG~~~~--~-~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~-----~y- 337 (344) +.-++--++|+++. +|..-+ . +++++...+.......+.+.--+..|++ ||+.|...++.++ +| T Consensus 299 ~~i~~~d~~Isk~i------LGqtlTs~~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~li~~l~~lNfg~~~~~P 372 (448) T protein:vir:79 299 PYLTYHDAGIARAL------GIDFNTVQLNMGVQAINIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLPNWPSATRFP 372 (448) T ss_pred HHHHHHHHHHHHHH------hhhhhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCc Confidence 77778888888764 343221 1 1222222222223334555666677765 7777655554443 22 Q ss_pred ccccCCC Q lcl|Aclame:pro 338 SLDTDNG 344 (344) Q Consensus 338 ~l~~d~g 344 (344) .|.|+.- T Consensus 373 ~~~f~~~ 379 (448) T protein:vir:79 373 RLTFEME 379 (448) T ss_pred EEEecCC Confidence 4444433 No 110 >protein:vir:77981 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467939;genbank:gi:157265380;genbank:GeneID:5600471 Probab=99.07 E-value=2.2e-10 Score=73.57 Aligned_cols=323 Identities=12% Similarity=0.025 Sum_probs=168.1 Q ss_pred CCCCCCCCCCcchhhccc---cccce--eEEEcCC-ceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTA---SAPKM--EAFTFGE-PVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSS 74 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~---~~~~~--~~f~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~ 74 (344) |+||++|.+..++...+. +.+.. ....+.+ |..-+.-... +.+ .+. +=.+ .|.+.....+|..+ T Consensus 1 m~kk~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~i--Lr~------~~~~-~ly~~m~~D~hi~s 70 (448) T protein:vir:77 1 MAKRGRKPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREF-DEL--LQG------KDGL-LVYHKMLSDGTVKN 70 (448) T ss_pred CCCCCCCCcccCCcccccchhhhhhhccchhhhcccccccccccch-hHh--hcc------ccch-HHHHHHhhChHHHH Confidence 999998765333221111 11100 0000111 0000000000 000 010 0011 23333445777788 Q ss_pred hhhhcchhhHH---hhhcCCCC------------------------CHHHHHHHHHHHHhcCCceEEEeeC--CCCc--e Q lcl|Aclame:pro 75 PIYVKRNILAS---TFIPHPWL------------------------SQQDFSRFVLDFLVFGNAFLEKRYS--TTGK--V 123 (344) Q Consensus 75 ~i~~k~n~~~~---~~~pnp~~------------------------~~~~~~~~~~d~ll~Gnay~~~~r~--~~G~--~ 123 (344) |+..++..++. .+.|+.-. .+..+-.-++|.+.+|-+.+|++.. ..|. + T Consensus 71 ~l~~Rk~av~~~~w~v~p~~~~~~d~~~ae~v~~~l~~~~~~~~~~~f~~~i~~~lda~~~G~s~~Eivw~~~~dg~~~~ 150 (448) T protein:vir:77 71 ALNYIFGRIRSAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIYENAYIYGMAAGEIVLTLGADGKLIL 150 (448) T ss_pred HHHHHHHHHhcCCceEecCCCCHHHHHHHHHHHHHhhchhhhhccCCHHHHHHHHHHhhhhcceeEEEEEeecCCCceee Confidence 87766554443 12222111 1111222245677899999999864 3454 4 Q ss_pred EEEEEeCccee---eccccCceeEEEcCC--------ceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHH Q lcl|Aclame:pro 124 IRLETSPAKYT---RRGVEEDVYWWVPSF--------NEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESAT 192 (344) Q Consensus 124 ~~L~pl~~~~~---~~~~~~~~~~~~~~~--------~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~ 192 (344) ..|.+.++..+ ....++...+....+ .....++.+-++|.... ..+..||.+.+..+.-......... T Consensus 151 ~~l~~r~~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~-~~g~p~g~gLlr~~~w~~~fK~~~~ 229 (448) T protein:vir:77 151 DKIVPIHPFNIDEVLYDEEGGPKALKLSGEVKGGSQFVNGLEIPIWKTVVFLHN-DDGSFTGQSALRAAVPHWLAKRALI 229 (448) T ss_pred ccccccCCCccceeeeecCCceEEEecCCcccccccCCCccccccceEEEEecC-CcCCcccchHHHHHHHHHHHHHhhH Confidence 46777777533 333333332222221 12234577788888654 3456789999999999999999999 Q ss_pred HHHHHHHHccCCCceEEEecCC-CCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHH Q lcl|Aclame:pro 193 LFRRKYYENGAHAGYIMYVTDA-VQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKK 271 (344) Q Consensus 193 ~~~~~~f~Ng~~p~gil~~~~~-~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~ 271 (344) ++...|.+.-+.|--|.+++.+ .-++++++++.+...+..++.+++ +|+ +.|++++=++.......+.+.-+ T Consensus 230 ~~w~~f~E~yG~P~~vgky~~ga~~~~~~~~~l~~av~~i~~g~~a~--~ii-----P~g~~ie~~ea~~~~~~~~~~i~ 302 (448) T protein:vir:77 230 LLINHGLERFMIGVPTLTIPKSVRQGTKQWEAAKEIVKNFVQKPRHG--IIL-----PDDWKFDTVDLKSAMPDAIPYLT 302 (448) T ss_pred HHHHHHHHHcCCceeEEecCCCCCCCHHHHHHHHHHHHHHhcCCceE--EEe-----cCCceEEEEecCCCccCHHHHHH Confidence 9999999998899888877533 335677888888877765444443 222 23444433333333344667777 Q ss_pred hhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceecc-----cc-ccccCCC Q lcl|Aclame:pro 272 ASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFK-----NY-SLDTDNG 344 (344) Q Consensus 272 ~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~-----~y-~l~~d~g 344 (344) +--++|+++..=. .+- ...++++++...+.........+.-.++.|++ ||+.|...++.++ +| .|.|+.- T Consensus 303 ~~d~~Isk~iLGq-tlT--s~~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~Li~~l~~lNfg~~~~~P~~~f~~~ 379 (448) T protein:vir:77 303 YHDAGIARALGID-FNT--VQLNMGVQAVNIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLPNWPGATRFPRLTFEME 379 (448) T ss_pred HHHHHHHHHHhcc-ccc--cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEecCC Confidence 7788888865332 110 01112222222222223345556666777765 7777755554433 11 3444433 No 111 >protein:vir:107742 Length: 537 # NCBI annotation: gp28 # Family: family:all:297 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024875;genbank:gi:48697517;genbank:GeneID:2948359 Probab=99.06 E-value=4.1e-10 Score=72.04 Aligned_cols=318 Identities=8% Similarity=0.064 Sum_probs=148.5 Q ss_pred CCC-----------------------CCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhh-cc--ch-hh Q lcl|Aclame:pro 1 MSK-----------------------KKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECI-SN--GR-WY 53 (344) Q Consensus 1 m~~-----------------------~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~-~~--~~-~~ 53 (344) |+. +.+-...+... ....+.+-.=++.+..+ ++..+.... .+ .. +| T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 97 (537) T protein:vir:10 25 VGIFGAGDDEKPFTRAQLVHQTMMAIRDHAIAMMPKV--DGSHPDMAMDGLDVEGG-----TFSAYANPNLSEGLVLWYA 97 (537) T ss_pred cCCCcccchhhHHHHHHhhhhccCCCCCccCcccccc--cccccchhccccccchh-----hhhhhccccccchhhhhcc Confidence 222 11100000000 00000010111111100 111111110 01 12 23 Q ss_pred hccccHHHHHHHHhhhhhhhhhhhhcchhhHHhhhc----C-----------------CCCCHHHHHHHHHHHHhcCCce Q lcl|Aclame:pro 54 EPPVSFTGLAKSLRAAVHHSSPIYVKRNILASTFIP----H-----------------PWLSQQDFSRFVLDFLVFGNAF 112 (344) Q Consensus 54 ~~p~~~~~l~~~~~~~~~~~~~i~~k~n~~~~~~~p----n-----------------p~~~~~~~~~~~~d~ll~Gnay 112 (344) .+-+.-+.|..+++.+.....++..-..+....... + .+..+..+...+...-++|.++ T Consensus 98 ~~~~~~~~l~a~Y~~~~l~r~iVd~~A~d~~r~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~~~~l~~a~~~~rlyG~~~ 177 (537) T protein:vir:10 98 QQAFIGHQMCALIATHWLVNKACSQMPRDAMRKGYKIISDDGNELDPKDAKFIDRYDRAFNIKKHAIQFVRKGRIFGIRI 177 (537) T ss_pred ccCCccHHHHHHHHhCchhhhhhhhhhHHhhcCCceeecCCcccccHHHHHHHHHHHHHhhHHHHHHHHHHhcccccceE Confidence 333444667777887777666665444433221100 0 0111222223333345789998 Q ss_pred EEEee---CC-------------CCceEEEEEeCcceeeccc------c--Cc-----eeEEEcCCceEEEEecccEEEe Q lcl|Aclame:pro 113 LEKRY---ST-------------TGKVIRLETSPAKYTRRGV------E--ED-----VYWWVPSFNEPTAFAPGSVFHL 163 (344) Q Consensus 113 ~~~~r---~~-------------~G~~~~L~pl~~~~~~~~~------~--~~-----~~~~~~~~~~~~~~~~~eIih~ 163 (344) +++.- |. .|....|..+++.++.... + .. .+|++. + ..+.++.|||+ T Consensus 178 i~i~v~~~D~~~~~~Pl~~~~i~kg~~k~l~vidp~~~~~~~~~~~~~dp~sp~fg~P~~y~v~--g--~~iH~SRli~f 253 (537) T protein:vir:10 178 ALFKVDSPDPYYYEKPFNIDGVMPGAYKGIVQIDPYWCAPLLDAQASSNPVSMHFYEPTYWLIN--G--KKYHRSHLAIY 253 (537) T ss_pred EEEeecCcCCcccccccccccccccceeEEEEechhhcccccchhhhccCCccccCCceeeeec--C--eEecceeEEEe Confidence 87753 21 2234567777776555321 1 11 234442 2 35778999998 Q ss_pred cCCCC------CCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhccccc Q lcl|Aclame:pro 164 LEPDI------NQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNF 237 (344) Q Consensus 164 ~~~~~------~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~ 237 (344) ....+ ...++|+|.++.+...|.....+.......+........-+.......++++..+..+.+.. +.+|. T Consensus 254 ~g~~~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~~r~~~~~~--~r~n~ 331 (537) T protein:vir:10 254 INDEVVDFLKPSYIYGGVPLPQQIMERVYAAERTANEGPMLAMTKRQTVLKVDAAQVLANKQQFDETMSWWTA--TRDNY 331 (537) T ss_pred cCCCCchhhhcccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeechHHhhcCHHHHHHHHHHHHh--hcCCc Confidence 65422 23467999999999999888777777777776665553322222223344443333333332 23444 Q ss_pred ccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChH-HhccccccccccccHHHHHHHHHH------ Q lcl|Aclame:pro 238 KNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQ-LMGGKPENVGSLGDIEKVAKVFVR------ 310 (344) Q Consensus 238 ~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~-llG~~~~~~~~~~n~e~~~~~f~~------ 310 (344) +. +++.. ++-+++.++.+... +-+......+.||++.|||.. |+|..+.+ ..++.+...+.|+. T Consensus 332 g~-~~id~----e~e~~e~~~~~lsg--l~~~l~~~~~~iAa~~~IP~t~L~G~sp~G--lnatGe~D~~~yyd~I~~~Q 402 (537) T protein:vir:10 332 QV-RVVDK----DNEDVVQIDTTLND--LDKVIMNQYQLVCAIARTPAPKMLGTVPTG--FNSTGDYEEASYHEECESTQ 402 (537) T ss_pred ce-eEecC----CCceeEEEeccCCC--HHHHHHHHHHHHHhhhCCCceeeccCCccc--cccchhHHHHHHHHHHHHHH Confidence 44 44432 12345544433322 234556677889999999998 45754332 12334555555553 Q ss_pred HHHHHHHHHHHH-HHH-hhCccceeccccccccCCC Q lcl|Aclame:pro 311 NELIPLQDRIRE-ING-WIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 311 ~~l~P~~~~ie~-ln~-~L~~~~irf~~y~l~~d~g 344 (344) ..|.|.+.++.+ |.+ +++.+ .+++++|++= T Consensus 403 e~l~p~l~~l~~ll~~~~~~~~----~~~~i~f~pL 434 (537) T protein:vir:10 403 DDMRPLIDRHHQLVCRSHLRKR----IRVKVEFPPM 434 (537) T ss_pred HHHHHHHHHHHHHHHHhcCCCC----cceEEEeCCC Confidence 347787777665 222 22322 1234444422 No 112 >protein:vir:103860 Length: 528 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938234;genbank:gi:38229139;genbank:GeneID:2648175 Probab=99.00 E-value=3e-09 Score=67.28 Aligned_cols=322 Identities=11% Similarity=0.028 Sum_probs=176.1 Q ss_pred CCCCC------CCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHH-hhhhhhh Q lcl|Aclame:pro 1 MSKKK------GKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSL-RAAVHHS 73 (344) Q Consensus 1 m~~~~------~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~-~~~~~~~ 73 (344) |++=- -+++.-. +..++....+.-..-+.|..-++-..+-..+....+|++- ....|.+.. +..+|.. T Consensus 1 ~~~~~d~~g~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~----~~~~L~~~m~e~D~~i~ 75 (528) T protein:vir:10 1 MAAIVDIYGNPLRTQQLR-KQQTAHLAGLAKEFANHPAKGLTPAKLAHILIEAEQGHLQ----AQAELFMDMEERDAHLF 75 (528) T ss_pred CCeeECCCCCcccccccc-chhhhhhhhhhhhhcccCCCCCCHHHHHHHHHhhhCCCHH----HHHHHHHHHHhhChHHH Confidence 55421 1111100 0111111111111112233333333333344444455332 223343333 4688888 Q ss_pred hhhhhcchhhHHh---hhcCCCCC----------------HHHHHHHH---HHHHhcCCceEEEeeCC---CCceEEEEE Q lcl|Aclame:pro 74 SPIYVKRNILAST---FIPHPWLS----------------QQDFSRFV---LDFLVFGNAFLEKRYST---TGKVIRLET 128 (344) Q Consensus 74 ~~i~~k~n~~~~~---~~pnp~~~----------------~~~~~~~~---~d~ll~Gnay~~~~r~~---~G~~~~L~p 128 (344) +|+..++..++.. +.|....+ ...|..++ ++.+.+|-+.+|++... ...|..+.+ T Consensus 76 s~l~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~f~~~i~~~lda~~~G~s~~Ei~w~~~~g~~~~~~~~~ 155 (528) T protein:vir:10 76 AEMSKRKRAVLGLDWTIEPPRNASAAEKADAEYLHELLLDLEGIEDLMLDCMDGVGHGYSAIELDWSLQGREWLPQAFDH 155 (528) T ss_pred HHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhCCccHHHHHHHHHhhhhhcceeEEEEEeecCCceeEEEeee Confidence 8887776655542 22321111 11244444 34567999999998643 345778999 Q ss_pred eCcceeeccccCceeEEEcCCc-eEEEEeccc-EEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCc Q lcl|Aclame:pro 129 SPAKYTRRGVEEDVYWWVPSFN-EPTAFAPGS-VFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAG 206 (344) Q Consensus 129 l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e-Iih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~ 206 (344) .++.+.+...+++..+....+. ....+++.. |+|.. .......||.+.+..+.-.......+.++...|.+.-+.|- T Consensus 156 r~~~~f~~~~~~~~~l~~~~~~~~g~~l~~~k~iv~~~-~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~ 234 (528) T protein:vir:10 156 RPQSWFQLNPDDQDELRLRDNSIAGEVLQPFGWIMHKP-RSRSGYVARSGLFRVLAWPYLFKHYSTADLAEMLEIYGLPI 234 (528) T ss_pred ecccceeeccCCCcEEeccCCCCCceeecCCCeEEEee-cCCCCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCCe Confidence 9998888776666555544332 334566655 55554 33455678999999999999999999999999999999998 Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChH Q lcl|Aclame:pro 207 YIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQ 286 (344) Q Consensus 207 gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~ 286 (344) -|.+++ +..++++++++.+.+++..+ ++ .+|+ |. ...++++..+... -+-|.+.-++-.++|+++. T Consensus 235 ~igky~-~~a~~~ek~~L~~al~~i~~--~~--~~ii-P~--~~~ie~~ea~~~~-~~~f~~li~~~d~~Isk~i----- 300 (528) T protein:vir:10 235 RLGKYP-PGTPDEEKVTLLRAVTGLGH--AA--AGII-PE--SMSIDFQEASKGS-AEPFMAMMRWCDDSMSKAI----- 300 (528) T ss_pred EEEecC-CCCCHHHHHHHHHHHHHHhh--Cc--EEEe-cC--CceeEEeecCCCC-hhHHHHHHHHHHHHHHHHH----- Confidence 888875 44688888888888876532 22 2232 22 2356666654333 3458888888889998865 Q ss_pred Hhccccc------cccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceecc---------ccccccCCC Q lcl|Aclame:pro 287 LMGGKPE------NVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFK---------NYSLDTDNG 344 (344) Q Consensus 287 llG~~~~------~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~---------~y~l~~d~g 344 (344) +|..-+ .+++++-. +....-....+.--++.|++ ||+.|-..++.++ ...|.|+.- T Consensus 301 -LGqtlTs~~~~g~~gS~Alg-~vh~~v~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~~~~~~p~~~~~~~ 372 (528) T protein:vir:10 301 -LGGTLTSQTSESGGGAYALG-QVHNEVRHDLLAADARQLAATLSRDLLWPLLVLNRSGNLDARRAPRLVFDLK 372 (528) T ss_pred -hhhhhhccccccccchhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEecCC Confidence 332221 11222211 22222334455555666664 6666533333322 123344333 No 113 >protein:vir:80040 Length: 461 # NCBI annotation: gp3 # Family: family:all:297 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468707;genbank:gi:157325287;genbank:GeneID:5601731 Probab=98.98 E-value=8.6e-10 Score=70.28 Aligned_cols=316 Identities=11% Similarity=0.087 Sum_probs=155.3 Q ss_pred CCCCCCCCCCcchhhccccccceeEE-EcCCceeccCcchhhhhhhhhccchhhhc-cccHHHHHHHHhhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAF-TFGEPVPVLDRRDILDYVECISNGRWYEP-PVSFTGLAKSLRAAVHHSSPIYV 78 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~l~~~~~~~~~~~~~i~~ 78 (344) |+++.+.+......... +...++ ..|.+. ..+-+.+. .+..+ -++...|..+++.+...+.++.. T Consensus 1 ~~~~~~a~~~~~~~~a~---~~~~~~~~~g~~~----~~d~~~~~------~~~~~~~~~~~~l~~lY~~~~l~r~iVd~ 67 (461) T protein:vir:80 1 MYSIDKAKQAKIDSKIV---NRNDFMVGHGKAN----SRDKLTRQ------TPGNGQKLDLKACENLYASNSIAMNIVDI 67 (461) T ss_pred Cccchhhhhhhhhhhhh---hhhHHHhhcCCcc----hhhhhhcc------ccCcccccCHHHHHHHHHhCCccchhhcc Confidence 99988765544432111 111111 111100 00000000 01010 12333333444444433333332 Q ss_pred cchhhHHhhh----cC------------CCCCHHHHHHHHHHHHhcCCceEEEee-CCC------------C---ceEEE Q lcl|Aclame:pro 79 KRNILASTFI----PH------------PWLSQQDFSRFVLDFLVFGNAFLEKRY-STT------------G---KVIRL 126 (344) Q Consensus 79 k~n~~~~~~~----pn------------p~~~~~~~~~~~~d~ll~Gnay~~~~r-~~~------------G---~~~~L 126 (344) -...+..... .+ .+-.+..+...+....++|.+|+.+.. +.. + ....| T Consensus 68 ~a~d~~r~g~~i~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~rl~G~a~i~i~v~d~~~~~~~~~~pl~~~~~~~~~~l 147 (461) T protein:vir:80 68 ISEDMVRAGWSLKTDNKEMKKNIESKWRKLKTKDRFQKLYADKRLYGDGFLSIGVVSSNREQADLSTAIDPKTIKSIPYI 147 (461) T ss_pred chHHhhcCCeeeecCCHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccEEEEEEeecCCccccCccCCcccccccceeEE Confidence 2222111000 00 011223344555566799999998843 211 1 12233 Q ss_pred EEeCcceeec-----cccCc-----eeEEEcC-------------CceEEEEecccEEEecCCCCCCCcccccchhhhHH Q lcl|Aclame:pro 127 ETSPAKYTRR-----GVEED-----VYWWVPS-------------FNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALN 183 (344) Q Consensus 127 ~pl~~~~~~~-----~~~~~-----~~~~~~~-------------~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~ 183 (344) .|+.+..+.. .+... .+|++.. +.....+.+..|||+.+....+..+|.|.++.+.. T Consensus 148 ~~~~~~~i~~~~~~~dp~sp~fg~P~~y~i~~~~~~~~~~~~~~~~~~~~~iH~SRii~~~~~~~~~~~~G~S~le~~~~ 227 (461) T protein:vir:80 148 NTFNTQKVTQLYLNQDMFSEHFGEVEFFEVNRVSQLGEEILSGTTASTSEQIHRSRIIHEQGLRFEGETKGRSIFESLYD 227 (461) T ss_pred EeccccccchhhhcccCcCcccccceEEEEeccccccccccccccCccceEEccccEEEecCCCCCccccCcchHHHHHH Confidence 3332222211 11111 2455533 22346788999999988777678899999999999 Q ss_pred HHHHHHHHHHHHHHHHHccCCCceEEEecC-CCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChh Q lcl|Aclame:pro 184 SAWLNESATLFRRKYYENGAHAGYIMYVTD-AVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVAT 262 (344) Q Consensus 184 ~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~-~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~ 262 (344) .+.....+......+..+...+ ++++++ ..+..++..++.+.++...+ | ..+++++. ++ +++.++.+.. T Consensus 228 ~l~~~~~~~~~~~~l~~~~~~~--v~k~~~l~~~~~~~~~~~~~~~~~~~~--~-~g~~~~d~---~e--~~e~~~~~ls 297 (461) T protein:vir:80 228 IITVMDTSLWSVGQILYDFAFK--VYKTDDIDALNKDDKANLTAMLDFMFR--T-EALAIIKG---DE--QLTKESTNVS 297 (461) T ss_pred HHHHHHHHHHHHHHHHHHhCCC--ceecchHHhhhchHHHHHHHHHHHhcC--C-ceEEEEcC---Cc--ceEEEecCcC Confidence 9988888888887777765444 445443 12334555566666765543 2 34566543 22 3454444333 Q ss_pred HHHHHHHHHhhHHHHHHHhcCChHHh-ccccccccccccHHHHHHHHHH-------HHHHHHHHHHHH-HHHhhC--ccc Q lcl|Aclame:pro 263 KDDFFNIKKASAADLLDAHRIPFQLM-GGKPENVGSLGDIEKVAKVFVR-------NELIPLQDRIRE-INGWIG--QEV 331 (344) Q Consensus 263 d~qf~e~~~~~~~~I~~~fgVPp~ll-G~~~~~~~~~~n~e~~~~~f~~-------~~l~P~~~~ie~-ln~~L~--~~~ 331 (344) + +-+..+...+.||++-+||...| |..+ ++.++.+...+.|+. ..+.|+++++-+ |-...+ ... T Consensus 298 g--l~~~l~~~~~~iaa~s~iP~t~L~G~s~---g~~asge~D~~~yyd~i~~~qe~~l~p~le~l~~~i~~s~~~~~~~ 372 (461) T protein:vir:80 298 G--MKDLLDYGWDYLAGAVRMPKTVLKGQEA---GTLTGAQYDVMNYYARVSSIQENRLRPQLEYLTRLLMWASDDCGPS 372 (461) T ss_pred C--HHHHHHHHHHHHhhhhcCCeeeeecccC---CccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc Confidence 2 33566678889999999999865 5432 344555666666654 345555555443 211111 112 Q ss_pred eecc--ccccccCCC Q lcl|Aclame:pro 332 IRFK--NYSLDTDNG 344 (344) Q Consensus 332 irf~--~y~l~~d~g 344 (344) +.+. ++.++|++= T Consensus 373 ~~p~~~~~~i~f~~L 387 (461) T protein:vir:80 373 IDPDSFEWAIEFNPL 387 (461) T ss_pred cCccccceEEEeCCC Confidence 2222 344555433 No 114 >protein:vir:108215 Length: 469 # NCBI annotation: gp6 # Family: family:all:2372 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552335;genbank:gi:160700655;genbank:GeneID:5758935 Probab=98.97 E-value=2.9e-09 Score=67.41 Aligned_cols=314 Identities=13% Similarity=0.058 Sum_probs=163.1 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) |+-+.+..+..- +... +.+-| ..+.+.+++..+ .++...-|=.+....++.+..+|..+|+..++ T Consensus 1 ~~~~~~~~~p~~------~~g~--~~~~~----~~~~~~~~~~~e---~~~~lr~~~~~~ly~~m~e~D~~i~s~l~~rk 65 (469) T protein:vir:10 1 MTERVKTAAPVS------EAGY--VFGSG----VVDGWTVWDPFE---QTPELQWPQSVAVYSRMDNEDSRVTSLLEAIS 65 (469) T ss_pred CCCcccCCCCcc------chhh--hhhcc----cccchhhccccc---cccccccccchHHHHHHHhhChHHHHHHHHHH Confidence 554432211110 0000 00000 000111111111 11000001111111233345666666665554 Q ss_pred hhhHH---hhhcCCCCC-------------------------------H-HHHHHHHHHHHhcCCceEEEeeCCC----- Q lcl|Aclame:pro 81 NILAS---TFIPHPWLS-------------------------------Q-QDFSRFVLDFLVFGNAFLEKRYSTT----- 120 (344) Q Consensus 81 n~~~~---~~~pnp~~~-------------------------------~-~~~~~~~~d~ll~Gnay~~~~r~~~----- 120 (344) ..+.. .+.|+.... + +.+..++.+.+.+|-+..|++.... T Consensus 66 ~av~~~~w~v~p~~~~~e~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~a~~~G~s~~Eivw~~~~~~~d 145 (469) T protein:vir:10 66 LPIRSTPWRIRANGASDEVTEFVSRNLMVPIDGEDDVRNPGRSRGRFSWAEHLEEVTSPTLQFGHAVFEQVYRPRNQSPD 145 (469) T ss_pred HHHhcCCceEecCCCCHHHHHHHHHHHHhhhhhhhhhhhhhhhhccccHHHHHHHHHHHhhhhCceeeeeeeecccccCC Confidence 43332 122221110 1 1122333345668999999987532 Q ss_pred C--ceEEEEEeCccee---eccccCceeEEE-------------cCCceEEEEecccEEEecCCCCCCCcccccchhhhH Q lcl|Aclame:pro 121 G--KVIRLETSPAKYT---RRGVEEDVYWWV-------------PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSAL 182 (344) Q Consensus 121 G--~~~~L~pl~~~~~---~~~~~~~~~~~~-------------~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~ 182 (344) | .+..|.+.|+.++ ....+++..... ..++....+++...|+.++.......||.+.+..+. T Consensus 146 G~~~~~~l~~rp~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lp~~k~i~~~~~~~~g~p~g~gLlr~~~ 225 (469) T protein:vir:10 146 GRFWLRKLAPRPQWTISKFNVAPDGGLESIEQIAPPARTRGSLYVANIAPPEIPVNRLVVYTRNKRPGQWQGKSILRSAY 225 (469) T ss_pred CceeeeeeeecCcccceeeeeccCCceeeeeecCcccccccccccCCCCccccccCcEEEEEecCCCCCcccchhHHHHH Confidence 3 3667777777644 222222221111 011223456666655444444456689999999999 Q ss_pred HHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChh Q lcl|Aclame:pro 183 NSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVAT 262 (344) Q Consensus 183 ~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~ 262 (344) ........+.++...|...-+.|--|.+++ +..++++++++.+.+++..++.+++-+ + +.|++++-++.... T Consensus 226 ~~~~fK~~~~~~w~~f~EryG~P~~vgky~-~~a~~~ek~~l~~a~~~~~~g~~a~~i--i-----p~~~~ie~~ea~g~ 297 (469) T protein:vir:10 226 KHWLLKDKLLRIEAATAERNGMGIPVGTAS-SATDEDEVRKMAALARSVRGGINAGVG--L-----AQGQILELLGVSGN 297 (469) T ss_pred HHHHHHHHHHHHHHHHHHHcCCcceEEecC-CCCCHHHHHHHHHHHHHHhcCCceEEE--c-----cCCceEEEeecCCC Confidence 999999999999999999988888777765 456888899999888876544444332 2 34566666666666 Q ss_pred HHHHHHHHHhhHHHHHHHhcCChHHhccccc---cccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceecc--- Q lcl|Aclame:pro 263 KDDFFNIKKASAADLLDAHRIPFQLMGGKPE---NVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFK--- 335 (344) Q Consensus 263 d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~---~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~--- 335 (344) ...|.+.-++--++|+++. +|..-+ ++++++-. +.........+.-.++.|++ ||+.|...+++++ T Consensus 298 ~~~~~~li~~~d~~Isk~i------LG~tlTs~~~gGS~a~~-~vh~ev~~d~~~sDa~~i~~tln~~li~~l~~lN~g~ 370 (469) T protein:vir:10 298 LPDIRRAIEGHDRSIALSG------LAHFLNLDGKGGSYALA-SVLEDPFTQAVHAYATSICRIANQHIIEDLVDINFGV 370 (469) T ss_pred chHHHHHHHHHHHHHHHHH------hcccccccCccchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC Confidence 6679999999999998865 333211 22333322 33333444456666666765 7766644443332 Q ss_pred ---ccccccCCC Q lcl|Aclame:pro 336 ---NYSLDTDNG 344 (344) Q Consensus 336 ---~y~l~~d~g 344 (344) ...|.|++= T Consensus 371 ~~~~P~~~~~~~ 382 (469) T protein:vir:10 371 DTPAPVLTFDPI 382 (469) T ss_pred CCCccEEEecCC Confidence 023444332 No 115 >protein:vir:104338 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398967;genbank:gi:81343951;genbank:GeneID:3778870 Probab=98.92 E-value=1.1e-09 Score=69.78 Aligned_cols=295 Identities=9% Similarity=0.026 Sum_probs=142.2 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) |-|-=.-... .... +.....|+.|.. .....|..+++.+...+.++..-. T Consensus 1 ~~~~D~~~n~-----~~gg--~~~~~~~~~~~~-----------------------~~~~~l~a~Y~~~~l~~~~Vd~~a 50 (422) T protein:vir:10 1 MVKTDSYANI-----FLGG--SDGSEIYGSLQN-----------------------QAPTILASLYADNALVRRIIDTIP 50 (422) T ss_pred CccchhhHHH-----HcCC--CCCccccCcccc-----------------------cCHHHHHHHHHhChhhHHHHhhhh Confidence 2222111110 0000 000111222211 112233333444433333332222 Q ss_pred hhhHHhh--------------hcCCCCCHHHHHHHHHHHHhcCCceEEEee-C---------CCCceEEEEEeCcceeec Q lcl|Aclame:pro 81 NILASTF--------------IPHPWLSQQDFSRFVLDFLVFGNAFLEKRY-S---------TTGKVIRLETSPAKYTRR 136 (344) Q Consensus 81 n~~~~~~--------------~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r-~---------~~G~~~~L~pl~~~~~~~ 136 (344) .++.... .-..+--+..+...+....++|.|++.+.. + ..|....|.++++..+.+ T Consensus 51 ed~~r~g~~i~~~~~~~~~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~~~~Pl~~~g~~~~l~v~d~~~i~~ 130 (422) T protein:vir:10 51 ETALAAGFHIDGIDDEPAFWSRWDDLEMTQNINDAWSWARLFGGAAIVAIVKDNRALTSPVREGAELETVRVYDRTQVKV 130 (422) T ss_pred HHHhcCCccccCCCHHHHHHHHHHHhhHHHHHHHHHHhhccccceEEEEEecCCCCccccccccCceeeEEeeccccccc Confidence 2111100 000011123333444455689999988864 2 245566788888877654 Q ss_pred ccc----------CceeEEEcCCc--eEEEEecccEEEecCCC------CCCCcccccchhh-hHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 137 GVE----------EDVYWWVPSFN--EPTAFAPGSVFHLLEPD------INQELYGLPEYLS-ALNSAWLNESATLFRRK 197 (344) Q Consensus 137 ~~~----------~~~~~~~~~~~--~~~~~~~~eIih~~~~~------~~~~~~G~sp~~~-~~~~i~~~~~a~~~~~~ 197 (344) ... .-.+|++..++ ....+.++.|||+.... +....+|.|+++. +...+.....+...... T Consensus 131 ~~~~~dp~s~~fg~P~~y~v~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~ 210 (422) T protein:vir:10 131 QTREENPRNARFGEPLTYRITTNESDMFYDVHYSRIHIIDGERIPNVMRRQNDGWGRSVLSSDILDSIKDYTNCERLATQ 210 (422) T ss_pred hhcccCccccccCcceEEEEecCCCCcceeeccceeEEeCCCCchhhhcccCCcccchhHHHHHHHHHHHHHHHHHHHHH Confidence 321 11346665432 34678888899986432 3445689999986 56878777777777777 Q ss_pred HHHccCCCceEEEecC--CC-CCHHHHHHHHHHHHHh-hcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhh Q lcl|Aclame:pro 198 YYENGAHAGYIMYVTD--AV-QDRNDIEMLRENMVKS-KGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKAS 273 (344) Q Consensus 198 ~f~Ng~~p~gil~~~~--~~-~~~e~~~~l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~ 273 (344) .+...... ++++++ .. .+.+....++++++.. ..-++.+.+++.+. +-+++.++.+..+ +-+..... T Consensus 211 l~~~~~~~--v~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~-----~e~~e~~~~~lsg--l~~~~~~~ 281 (422) T protein:vir:10 211 LLKRKQQA--VWKAKGLAELCDDSEGFGAARLRLAQVDNNSGVGQAIGIDAE-----SEEYSVLNSDIGG--IDAFLDKK 281 (422) T ss_pred HHHHhccc--cccchhHHHhcCCccchHHHHHHHHHHHHhcCCccceeEecC-----CcceEEEecccCC--hHHHHHHH Confidence 65554333 344432 11 1233444555555433 22234444544321 2345555554443 44566677 Q ss_pred HHHHHHHhcCChHHh-cccccccccc-ccHHHHHHHHHH-------HHHHHHHHHHHHHHHhhCccceeccccccccCCC Q lcl|Aclame:pro 274 AADLLDAHRIPFQLM-GGKPENVGSL-GDIEKVAKVFVR-------NELIPLQDRIREINGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 274 ~~~I~~~fgVPp~ll-G~~~~~~~~~-~n~e~~~~~f~~-------~~l~P~~~~ie~ln~~L~~~~irf~~y~l~~d~g 344 (344) .++||++.+||...| |..+ +++ ++.+...+.||. ..+.|.+.++-++ +++=.+++++|++= T Consensus 282 ~~~iaaa~~IP~t~L~G~s~---~Glnatgd~d~~~yyd~i~~~Qe~~l~p~l~~l~~~-------i~~s~~~~~~f~pL 351 (422) T protein:vir:10 282 FDRIVALSGIHEIILKNKNV---GGVSSSQNTALETFHKLVDRKRNAELLPILEFLIPF-------IVNAEEWSVEFNPL 351 (422) T ss_pred HHHHHhhhCCCeeeeccCCc---ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcccCCcEEEeCCC Confidence 889999999999865 5543 333 334555566665 3344544443332 21112344444432 No 116 >protein:vir:99232 Length: 526 # NCBI annotation: putative portal protein # Family: family:all:313 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950451;genbank:gi:119953652;genbank:GeneID:4643092 Probab=98.86 E-value=1.7e-08 Score=63.16 Aligned_cols=323 Identities=11% Similarity=0.033 Sum_probs=175.7 Q ss_pred CCCCCCCCCCcch-----hhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHH-HHhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAA-----KTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAK-SLRAAVHHSS 74 (344) Q Consensus 1 m~~~~~~~~~~~~-----~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~-~~~~~~~~~~ 74 (344) |++=--+.-+|.. +..++....+.-..-+-|..-++-..+-.-+.....|++- ....|.+ +.+..+|..+ T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iLr~a~~gd~~----~~~~L~e~m~e~D~~i~s 76 (526) T protein:vir:99 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQ----AQAELFMDMEERDAHLFA 76 (526) T ss_pred CCeeECCCCCccccccccchhhhhhhhhhhhhcccCcCCCCHHHHHHHHHhhhCCCHH----HHHHHHHHHHhhChHHHH Confidence 6542211111110 0011111111001111232223222222333333444332 2233433 3346888888 Q ss_pred hhhhcchhhHHh---hhcCCCCCH----------------HHHHHHH---HHHHhcCCceEEEeeCCC---CceEEEEEe Q lcl|Aclame:pro 75 PIYVKRNILAST---FIPHPWLSQ----------------QDFSRFV---LDFLVFGNAFLEKRYSTT---GKVIRLETS 129 (344) Q Consensus 75 ~i~~k~n~~~~~---~~pnp~~~~----------------~~~~~~~---~d~ll~Gnay~~~~r~~~---G~~~~L~pl 129 (344) ++..++..++.. +.|+...+. ..|..++ ++.+.+|-+..|++.... ..|..|.+. T Consensus 77 ~l~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Eivw~~~~g~~~~~~l~~r 156 (526) T protein:vir:99 77 EMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPLAFHHR 156 (526) T ss_pred HHHHHHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcccCHHHHHHHHHHhhhhcceeEEEEEeecCCceeEEEeeee Confidence 888776665543 333322111 1133333 455679999999986443 357789999 Q ss_pred CcceeeccccCceeEEEcCC-ceEEEEecc-cEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCce Q lcl|Aclame:pro 130 PAKYTRRGVEEDVYWWVPSF-NEPTAFAPG-SVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGY 207 (344) Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~g 207 (344) ++.+.+...+.+....+..+ ..-..+++. -|+|.... ..+..||.+.+..+.-.......+.++...|.+.-+.|-- T Consensus 157 ~~~~f~~~~~~~~~l~~~~~~~~g~~l~~~k~i~~~~~~-~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~ 235 (526) T protein:vir:99 157 PQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRA-RSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIR 235 (526) T ss_pred cccceeeccCCCcEEEecCCCCCceeecCCCeEEEeecC-CcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCceE Confidence 99888877666655444433 333456665 45665443 3567799999999999999999999999999999999988 Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHH Q lcl|Aclame:pro 208 IMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQL 287 (344) Q Consensus 208 il~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~l 287 (344) +.+++ +..++++++++.+.+.+..+ ++ .+|+ |. ...++++..+.. .-+-|.+.-++-.++|+++. T Consensus 236 igky~-~~a~~~ek~~L~~av~~i~~--d~--~~ii-P~--~~~ie~~ea~~~-~~~~f~~li~~~d~~Isk~i------ 300 (526) T protein:vir:99 236 LGKYP-PGTADEEKATLLRAVTGLGH--AA--AGII-PE--TMAIDFQQAAQG-SSEPFLAMMRQSEDAISKAV------ 300 (526) T ss_pred EEecC-CCCCHHHHHHHHHHHHHHhh--Cc--EEEe-cC--CceeEEeecCCC-CHHHHHHHHHHHHHHHHHHH------ Confidence 88875 44588888888888876532 22 2333 22 234666665433 33458888888889998864 Q ss_pred hccccc------cccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccc---------cccccCCC Q lcl|Aclame:pro 288 MGGKPE------NVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKN---------YSLDTDNG 344 (344) Q Consensus 288 lG~~~~------~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~---------y~l~~d~g 344 (344) +|..-+ ++++++..+.... -....+.--++.|++ ||+.|-...+.++. .++.|+.- T Consensus 301 LGqtlTs~~~~g~~gS~a~g~vh~~-v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~~~~ 372 (526) T protein:vir:99 301 LGGTLTSTTSQSGGGAFALGQVHNE-VRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLR 372 (526) T ss_pred hhhhhccccccCcchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEeCCC Confidence 333211 1223322222222 233444555566654 66655433333321 23444433 No 117 >protein:vir:107662 Length: 427 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003893;genbank:gi:45686310;genbank:GeneID:2773002 Probab=98.81 E-value=2.8e-09 Score=67.50 Aligned_cols=294 Identities=8% Similarity=0.021 Sum_probs=140.5 Q ss_pred eeEEEcCCceeccCcchhhhhhhhhccchhhhccc--cHHHHHHHHhhhhhhhhhhhhcchhhHHhhh--cC-------- Q lcl|Aclame:pro 23 MEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPV--SFTGLAKSLRAAVHHSSPIYVKRNILASTFI--PH-------- 90 (344) Q Consensus 23 ~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~l~~~~~~~~~~~~~i~~k~n~~~~~~~--pn-------- 90 (344) |..|+-++-.-++.++ ..+..+.+-. ..+.|..+++.+.....++..-..++..... .. T Consensus 1 ~~~~~~d~~~~~~~~~---------~~~~~~~~~~~~~~~~l~a~Y~~~~l~~~~Vd~~aed~~r~g~~i~g~~~~~~~~ 71 (427) T protein:vir:10 1 MKIVKHDGYNDIFNGG---------ADGSPKPFFMSDASYHVGSFYNDNATAKRIVDVIPEEMVTAGFKMSGVKDEKEFK 71 (427) T ss_pred CCccccchHHHHhhcC---------CCCcccCccccCchHHHHHHHHcCchhhhhhccchHHhhcCCccccCccHHHHHH Confidence 2222221111111100 0011111000 1123445555555444444333222221100 00 Q ss_pred ----CCCCHHHHHHHHHHHHhcCCceEEEee----------CCCCceEEEEEeCcceeeccccC----------ceeEEE Q lcl|Aclame:pro 91 ----PWLSQQDFSRFVLDFLVFGNAFLEKRY----------STTGKVIRLETSPAKYTRRGVEE----------DVYWWV 146 (344) Q Consensus 91 ----p~~~~~~~~~~~~d~ll~Gnay~~~~r----------~~~G~~~~L~pl~~~~~~~~~~~----------~~~~~~ 146 (344) .+--+..+..++...-++|.|++.+.- +..|.+..|.++++..+.+.... -.+|++ T Consensus 72 ~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~l~~p~~~~g~l~~l~v~d~~~~~~~~~~~dp~s~~fg~P~~y~v 151 (427) T protein:vir:10 72 SLWDSYKLDSSLVDLLCWARLYGGAAMVAIIKDNRMLTSQAKPGAKLEGVRVYDRFAITVEKRVTNARSPRYGEPEIYKV 151 (427) T ss_pred HHHHHhhHHHHHHHHHHhccccceeEEEEEecCCCccccccCCCcceeEEEEechhcccccccccCccccccCcceEEEE Confidence 001122233334445689999987742 34567888999888776543211 124666 Q ss_pred cCCc--eEEEEecccEEEecCCC------CCCCcccccchh-hhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCC--C Q lcl|Aclame:pro 147 PSFN--EPTAFAPGSVFHLLEPD------INQELYGLPEYL-SALNSAWLNESATLFRRKYYENGAHAGYIMYVTDA--V 215 (344) Q Consensus 147 ~~~~--~~~~~~~~eIih~~~~~------~~~~~~G~sp~~-~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~--~ 215 (344) .+++ ..+.+.++.|||+.... +....+|.|++. ++...+.....+.......+...... ++++++- . T Consensus 152 ~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~k~~~~--v~k~~~l~~~ 229 (427) T protein:vir:10 152 SPGDNMQPYLIHHSRVFIADGERVAQQARKQNQGWGASVLNKSLIDAICDYDYCESLATQILRRKQQA--VWKVKGLAEM 229 (427) T ss_pred ecCCCCcceEEccccEEEecCCCchhhhcccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccc--cccchhHHHH Confidence 5433 33678888999986442 345678999986 56677777767666666655544333 3444321 1 Q ss_pred C-CHHHHHHHHHHHHHh-hcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHh-cccc Q lcl|Aclame:pro 216 Q-DRNDIEMLRENMVKS-KGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLM-GGKP 292 (344) Q Consensus 216 ~-~~e~~~~l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~ll-G~~~ 292 (344) + +.+....++++++.. ..-++.+.+++.+. +-+++.++.+... +-+......++||++.+||...| |..+ T Consensus 230 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~-----~e~~e~~~~~lsg--l~~~~~~~~~~iaaa~~IP~t~L~G~sp 302 (427) T protein:vir:10 230 CDDDDAQYAARLRLAQVDDNSGVGRAIGIDAE-----TEEYDVLNSDISG--VPEFLSSKMDRIVSLSGIHEIIIKNKNV 302 (427) T ss_pred hcCccchHHHHHHHHHHHHhcCcccceeeecC-----CCceeEEecccCC--hHHHHHHHHHHHHhhhCCCeeeeccCCc Confidence 1 222333444444332 22234444555422 2234444433332 33456667789999999999855 6543 Q ss_pred cccccc-ccHHHHHHHHHH-------HHHHHHHHHHHHHHHhhCccceeccccccccCCC Q lcl|Aclame:pro 293 ENVGSL-GDIEKVAKVFVR-------NELIPLQDRIREINGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 293 ~~~~~~-~n~e~~~~~f~~-------~~l~P~~~~ie~ln~~L~~~~irf~~y~l~~d~g 344 (344) + ++ ++-+...+.||. ..+.|.+.++-++. .+=.+++++|..= T Consensus 303 ~---Glnstgd~D~~nyyd~i~~~Qe~~l~p~l~~l~~~i-------~~s~~~~~~f~pL 352 (427) T protein:vir:10 303 G---GVSASQNTALETFYKLVDRKREEDYRPLLEFLLPFI-------VDEEEWSIEFEPL 352 (427) T ss_pred c---ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hcCCCcEEEeCCC Confidence 3 33 344555566665 34555554443321 1112344444432 No 118 >protein:vir:79063 Length: 491 # NCBI annotation: gp3 # Family: family:all:313 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111203;genbank:gi:134288841;genbank:GeneID:4960737 Probab=98.81 E-value=3.9e-08 Score=61.22 Aligned_cols=314 Identities=13% Similarity=0.139 Sum_probs=165.7 Q ss_pred CCCC------CCCCC----CcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhh Q lcl|Aclame:pro 1 MSKK------KGKTP----QPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAV 70 (344) Q Consensus 1 m~~~------~~~~~----~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 70 (344) |++. +..+. ++.....+..........++. .++..+- .+. ...+ ++. +-+.+...+ T Consensus 1 ~~~~i~~~~g~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~---~~p~~~~--il~-~~~~-------~~~-~y~~m~~D~ 66 (491) T protein:vir:79 1 MSKGLWVSPTEFVKFGEPDKSLSSQIATRARSIDFFALGM---YLPNPDP--VLK-ALGK-------DIR-VYRELRADA 66 (491) T ss_pred CCCeeeCCCCCcccccccchhHHHHHhhhccccccccccc---cCcchhH--HHh-hccC-------CHH-HHHHHhhCh Confidence 4431 10000 111111111111111111111 2222110 000 0111 112 222334677 Q ss_pred hhhhhhhhcchhhHHh---hhcCCCCCH--H---------HHHHHH---HHHHhcCCceEEEeeCCC---CceEEEEEeC Q lcl|Aclame:pro 71 HHSSPIYVKRNILAST---FIPHPWLSQ--Q---------DFSRFV---LDFLVFGNAFLEKRYSTT---GKVIRLETSP 130 (344) Q Consensus 71 ~~~~~i~~k~n~~~~~---~~pnp~~~~--~---------~~~~~~---~d~ll~Gnay~~~~r~~~---G~~~~L~pl~ 130 (344) |..+|+..++..++.. +.|+..... + .|..++ ++.+.+|-+.+|++.... ..|..|.+.+ T Consensus 67 ~i~s~l~~Rk~av~~~~w~i~~~~~~~~~a~~i~e~l~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~~~~~l~~r~ 146 (491) T protein:vir:79 67 HVGGCVRRRKAAVKALEWGLDRGKAKSRVAKSIADVFADLDLSRIATEMLDAVLYGYQPMEITWGKVGNYIVPIDVVGKP 146 (491) T ss_pred HHHHHHHHHHHHHhCCCcEEecCCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhhhcceeEEEEEeecCCeeeEEeeeeec Confidence 8888877665544431 222211111 1 123333 456689999999976543 3467899999 Q ss_pred cceeeccccCceeEEEcCC-ceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEE Q lcl|Aclame:pro 131 AKYTRRGVEEDVYWWVPSF-NEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIM 209 (344) Q Consensus 131 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil 209 (344) +.++....++...+....+ .....+++...|+.++.......||.+.+..+.-.........++...|.+.-++|--+. T Consensus 147 ~~~f~~d~~~~l~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~~G~P~~ig 226 (491) T protein:vir:79 147 ADWFVYDPENQLRFRSKEHWVQGEELPARKFLVPRQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVG 226 (491) T ss_pred ccceeeccCCceEEeecCCCCCceeecCCCeEEEEecCCCCCcccchhHHHHHHHHHHHHhhHHHHHHHHHHcCCCeEEE Confidence 9988877666655555443 334567777666555544455689999999999999999999999999999999998888 Q ss_pred EecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCC-hhHHHHHHHHHhhHHHHHHHhcCChHHh Q lcl|Aclame:pro 210 YVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEV-ATKDDFFNIKKASAADLLDAHRIPFQLM 288 (344) Q Consensus 210 ~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~-~~d~qf~e~~~~~~~~I~~~fgVPp~ll 288 (344) +++ +..++++++++.+.+.+..+ ++ .+|+ |. ...++++..+.. ..-..|.+.-++-.++|+++. + T Consensus 227 ky~-~~a~~~ek~~l~~al~~~~~--~a--~~vi-P~--~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~i------L 292 (491) T protein:vir:79 227 KHP-RSASDAETNLLLDRLEDMVQ--DA--VAVI-PD--DSSIEIKEAAGKSGSADVYERLLHFCRGEVSIAL------L 292 (491) T ss_pred ecC-CCCCHHHHHHHHHHHHHHhc--Ce--EEEe-cC--CceeEEEeccCCCCChhHHHHHHHHHHHHHHHHH------h Confidence 874 45678888888888876522 22 2233 21 234555544432 233347777778888888865 4 Q ss_pred cccc--ccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceecc-----ccccccCCC Q lcl|Aclame:pro 289 GGKP--ENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFK-----NYSLDTDNG 344 (344) Q Consensus 289 G~~~--~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~-----~y~l~~d~g 344 (344) |..- +++++++..+....+ ....+.-.+..|++ +|. |-..++.++ .+.+.+++= T Consensus 293 GqtlTt~~~gs~a~~~vh~~v-~~~i~~~D~~~i~~tln~-li~~l~~~N~~~~~~p~f~~~e~ 354 (491) T protein:vir:79 293 GQNQTTEATSTRASAQAGLEV-TDDIRDGDKAIVVEAMNM-LIRWICDLNFDGAARPVFDMWEQ 354 (491) T ss_pred hhhhccCcccchhhHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCcceEeecCc Confidence 4322 233444433333222 23344444555554 553 433332222 223333332 No 119 >protein:vir:79233 Length: 526 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469155;genbank:gi:157834998;genbank:GeneID:5648814 Probab=98.80 E-value=4.2e-08 Score=61.03 Aligned_cols=322 Identities=11% Similarity=0.052 Sum_probs=176.5 Q ss_pred CCCCCCCCCCcc---h--hhccccccce-eEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHH-HHhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPA---A--KTMTASAPKM-EAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAK-SLRAAVHHS 73 (344) Q Consensus 1 m~~~~~~~~~~~---~--~~~~~~~~~~-~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~-~~~~~~~~~ 73 (344) |++=--.--+|. . +..++....+ ..|+ +.|..-++-..+-.-+.....|+.. ....|.+ +.+..+|.. T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~gltp~~l~~il~~a~~gd~~----~~~~L~edm~e~D~~i~ 75 (526) T protein:vir:79 1 MAQIVDVYGNPIRPQQLREPQTSRLAGLAKEFA-QHPAKGLTPAKLARILVEAEQGNLQ----AQAELFMDMEERDAHLF 75 (526) T ss_pred CCeeeCCCCCccCccccchhhhhhhhhhhhhcc-cCCCCCcCHHHHHHHHHHhhCCCHH----HHHHHHHHHHhhChHHH Confidence 554221111110 0 0111111111 1111 1232222222222333333445332 2233443 334688888 Q ss_pred hhhhhcchhhHHh---hhcCCCCCH----------------HHHHHHH---HHHHhcCCceEEEeeCCC---CceEEEEE Q lcl|Aclame:pro 74 SPIYVKRNILAST---FIPHPWLSQ----------------QDFSRFV---LDFLVFGNAFLEKRYSTT---GKVIRLET 128 (344) Q Consensus 74 ~~i~~k~n~~~~~---~~pnp~~~~----------------~~~~~~~---~d~ll~Gnay~~~~r~~~---G~~~~L~p 128 (344) +|+..++..++.. +.|+...+. ..|..++ ++.+.+|-+.+|++.... -.|..|.+ T Consensus 76 s~l~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~ldA~~~G~s~~Ei~w~~~~g~~~~~~l~~ 155 (526) T protein:vir:79 76 AEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPLAFHH 155 (526) T ss_pred HHHHHHHHHHhCCCceEecCCCCChHHHHHHHHHHHHHhcccCHHHHHHHHHhhhhhcceeEEEEEeecCCceeEEEeee Confidence 8888776655542 333221111 1244444 455679999999986543 35778999 Q ss_pred eCcceeeccccCceeEEEcCC-ceEEEEeccc-EEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCc Q lcl|Aclame:pro 129 SPAKYTRRGVEEDVYWWVPSF-NEPTAFAPGS-VFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAG 206 (344) Q Consensus 129 l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e-Iih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~ 206 (344) .++.+.+...+++....+..+ ..-..+++.. |+|.. .......||.+.+..+.-.......+.++...|.+.-+.|- T Consensus 156 r~~~~F~~~~~~~~~l~~~~~~~~g~~l~~~k~iv~~~-~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~F~E~yG~P~ 234 (526) T protein:vir:79 156 RPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRP-RARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPI 234 (526) T ss_pred ecccceEeccCCCcEEEecCCCCCceeecCCceEEEee-cCCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCce Confidence 999888876666654444333 3345566664 55554 33456779999999999999999999999999999988998 Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChH Q lcl|Aclame:pro 207 YIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQ 286 (344) Q Consensus 207 gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~ 286 (344) -+.+++ +..++++++++.+.+.+..+ ++ .+|+ |. ...++++..+.. .-+-|.+.-++-.++|+++. T Consensus 235 ~igky~-~~a~~~ek~~L~~av~~i~~--da--~~ii-P~--~~~ie~~ea~~~-~~~~f~~li~~~d~~Isk~i----- 300 (526) T protein:vir:79 235 RLGKYP-PGTADEEKATLLRAVTGLGH--AA--AGII-PE--TMAIDFQQAAQG-SSEPFLAMMRQSEDAISKAV----- 300 (526) T ss_pred EEEecC-CCCCHHHHHHHHHHHHHHhc--Cc--EEEe-cC--CceeEEeecCCC-CHHHHHHHHHHHHHHHHHHH----- Confidence 888765 44578888888888876532 22 2333 22 234566665433 33458888889999998864 Q ss_pred Hhccccc------cccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccc---------cccccCCC Q lcl|Aclame:pro 287 LMGGKPE------NVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKN---------YSLDTDNG 344 (344) Q Consensus 287 llG~~~~------~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~---------y~l~~d~g 344 (344) +|..-+ ++++++..+.. ..-....+.--+..|++ ||+.|-..++.++. .++.|+.- T Consensus 301 -LGqtlTs~~~~g~~gS~a~g~vh-~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~~~~ 372 (526) T protein:vir:79 301 -LGGTLTSTTSQSGGGAFALGQVH-NEVRHDILASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLR 372 (526) T ss_pred -hhhhhccccccCcchhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEeCCC Confidence 333211 12233322222 23344455566667765 77766444433331 13444433 No 120 >protein:vir:99563 Length: 862 # NCBI annotation: minor head protein-like protein # Family: family:all:297 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039808;genbank:gi:126011058;genbank:GeneID:4818258 Probab=98.80 E-value=1.3e-08 Score=63.89 Aligned_cols=322 Identities=9% Similarity=0.066 Sum_probs=151.1 Q ss_pred CCCCCC------CCCCcchh-hcc---------ccc-----cceeEEEcCCcee----------------ccC-cchhhh Q lcl|Aclame:pro 1 MSKKKG------KTPQPAAK-TMT---------ASA-----PKMEAFTFGEPVP----------------VLD-RRDILD 42 (344) Q Consensus 1 m~~~~~------~~~~~~~~-~~~---------~~~-----~~~~~f~~~~p~~----------------~~~-~~~~~~ 42 (344) |.++++ +++.+... .+. ..+ .++..-++-.|.. -+. .++-.. T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~Dgl~n~~~~lG~~~~~s~ 118 (862) T protein:vir:99 39 LARTRQNWPVQKEKPNPIIRSVKDFPFVEISDSVNAKSVSGKNFAMDSAVRSAIKAITGFAMDDGGGAPVPIGAEGKQSS 118 (862) T ss_pred HHhhcccCCcccccCCCCCCcccccccccccccccchhhhhhhhcchhhcchhhhhhhhhhhhcchhhhhhccccccccc Confidence 444332 11111100 000 000 0000001111100 000 001011 Q ss_pred hhhhhccchhhhcc-ccHHHHHHHHhhhhhhhhhhhhcchhhHHhhhcCC------CCC----------------HHHHH Q lcl|Aclame:pro 43 YVECISNGRWYEPP-VSFTGLAKSLRAAVHHSSPIYVKRNILASTFIPHP------WLS----------------QQDFS 99 (344) Q Consensus 43 ~~~~~~~~~~~~~p-~~~~~l~~~~~~~~~~~~~i~~k~n~~~~~~~pnp------~~~----------------~~~~~ 99 (344) |.......+||.++ +.-+.|..+++.+.....++..-..+.......-. ... +.-+. T Consensus 119 y~~~~~~~~~~~~~~f~gyql~alY~~~~larkiVd~pAeDatR~g~~I~~~~d~~e~~~e~~~~ie~~~~rL~v~~~l~ 198 (862) T protein:vir:99 119 YAVPEALQDWYLSQGFIGHQACALIAQHWLVDKACSLAGEDAIRNGWHLKSLGEGEEIDEESLEKFKAIDVEFKVKENLI 198 (862) T ss_pred cccchhccccccccCcccHHHHHHHHhCchhhhhhhhhhHHHhhCCceEeecCcccccCHHHHHHHHHHHHHhhHHHHHH Confidence 11100112344332 22245667788887776666655544433211100 000 11111 Q ss_pred HHHHHHHhcCCceEEEee---CC-------------CCceEEEEEeCcceeecc------cc--Cce-----eEEEcCCc Q lcl|Aclame:pro 100 RFVLDFLVFGNAFLEKRY---ST-------------TGKVIRLETSPAKYTRRG------VE--EDV-----YWWVPSFN 150 (344) Q Consensus 100 ~~~~d~ll~Gnay~~~~r---~~-------------~G~~~~L~pl~~~~~~~~------~~--~~~-----~~~~~~~~ 150 (344) ..+...-++|.+++.+.. |. .|.+..|..+++.++... .+ ... +|.+. + T Consensus 199 eair~~RLyGga~ililv~~~D~~~LsqPLn~e~I~kG~lkgl~vlDp~w~~p~~v~~~~~Dp~sp~yGkP~~y~I~--g 276 (862) T protein:vir:99 199 EFNRFKNVFGIRVAIFVVDSEDPDYYEKPFNPDGITPGSYRGISQIDPYWMMPMLTAESTADPSSQFFYEPEFWIIS--G 276 (862) T ss_pred HHHHhcccccceEEEEEecCcCchhhhcCcCcccccccceeEEEEechhhhcccccccccccccccccCCceeeeec--C Confidence 222223368888776542 21 134456777777655431 11 111 34332 2 Q ss_pred eEEEEecccEEEecCCC------CCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCC-CCCHHHHHH Q lcl|Aclame:pro 151 EPTAFAPGSVFHLLEPD------INQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDA-VQDRNDIEM 223 (344) Q Consensus 151 ~~~~~~~~eIih~~~~~------~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~-~~~~e~~~~ 223 (344) ..+.++-|||+.... +...++|+|.++.+...|.....+......++.+.... ++++... .+.. .+. T Consensus 277 --~~IH~SRliif~g~~vpd~lk~ay~f~G~SvLe~iyd~L~~~d~t~~saa~Ll~ka~l~--v~ktd~l~~l~~--ed~ 350 (862) T protein:vir:99 277 --QKYHRSHLIIARGPQPADILKPTYIFGGIPLVQRIYERVYAAERTANEAPLLAMNKRTT--AIHTDTAKAIAN--EDK 350 (862) T ss_pred --eeeccceeEEecCCCchhhhhccCCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccc--eeechhHhhhcc--HHH Confidence 246677888886532 22345799999999999999988888888888876544 3344321 1221 234 Q ss_pred HHHHHHHh-hcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChH-HhccccccccccccH Q lcl|Aclame:pro 224 LRENMVKS-KGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQ-LMGGKPENVGSLGDI 301 (344) Q Consensus 224 l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~-llG~~~~~~~~~~n~ 301 (344) +.++++.. .+-+|. .+++++. ++ +++.++.+..+ +-+......+.||++.+||.. |+|..+.+ ..++. T Consensus 351 l~~r~~~~~~~rdN~-Gi~liD~---eE--e~e~ls~slSG--L~dll~~~~q~IAaas~IP~tiLfGqspaG--lnATG 420 (862) T protein:vir:99 351 FIQRLMFWVRYRDNH-AVKVLGT---DE--TMEQFDTSLAD--FDAVIMGQYQLVASIAKTPATKLLGTAPKG--FNSTG 420 (862) T ss_pred HHHHHHHHHhccCcc-eeEEecC---CC--ceeEEecccCC--hHHHHHHHHHHHHhhhCCCceeecccCccc--ccCch Confidence 55555442 233444 4666643 23 35544433322 223444556789999999998 56754332 22445 Q ss_pred HHHHHHHHH-------HHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 302 EKVAKVFVR-------NELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 302 e~~~~~f~~-------~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) +...+.||. ..|.|++++|.. +...++.+ .++.++|+.= T Consensus 421 E~D~~nYyD~I~s~QE~~L~P~LerL~~li~~~lg~~----~d~~ieFnpL 467 (862) T protein:vir:99 421 EFETISYHEELESIQEHVYMPFLQRHYLISRLSLGIQ----HEIDVVMEPV 467 (862) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CcceEEeCCC Confidence 656666665 567788888765 44445432 2344444332 No 121 >protein:vir:389 Length: 530 # NCBI annotation: gp4 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046899;genbank:gi:9630468;genbank:GeneID:1261643 Probab=98.80 E-value=2.6e-09 Score=67.63 Aligned_cols=323 Identities=8% Similarity=0.002 Sum_probs=146.9 Q ss_pred CCCCCCCCCCcchh--hcc---ccccceeEEEcCCceecc--CcchhhhhhhhhccchhhhccccHHHHH-HHHhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAK--TMT---ASAPKMEAFTFGEPVPVL--DRRDILDYVECISNGRWYEPPVSFTGLA-KSLRAAVHH 72 (344) Q Consensus 1 m~~~~~~~~~~~~~--~~~---~~~~~~~~f~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~l~-~~~~~~~~~ 72 (344) |..+..-.+..... ... .++++. --.+.++.|.. ...++...... +...+ .+.+.+++. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~w~~~~~s~~~~i~~~~~~------------lr~RaRdl~rNn~~a 67 (530) T protein:vir:38 1 MKIPSLVGPDGKTSLREYAGYHGGGGGF-GGQLRGWNPPSESADAALLPNYSR------------GNARADDLVRNNGYA 67 (530) T ss_pred CccceeecCccccchHHHhhhhcccCCC-CCcccccccCCCCHHHHHHHHHHH------------HHHHHHHHHhcChHH Confidence 54443322221100 000 000000 00111111111 11111111000 01111 123333333 Q ss_pred hhhhhhcchhhHHh------------------------------h-----hcC------CCCCHHHHHHHH-HHHHhcCC Q lcl|Aclame:pro 73 SSPIYVKRNILAST------------------------------F-----IPH------PWLSQQDFSRFV-LDFLVFGN 110 (344) Q Consensus 73 ~~~i~~k~n~~~~~------------------------------~-----~pn------p~~~~~~~~~~~-~d~ll~Gn 110 (344) .+++....+.+... + .++ ..++...++.++ ..++..|+ T Consensus 68 ~~av~~~~~nvVG~Gi~~~~~p~~~~l~~~~~~~~~~~~~ie~~w~~W~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE 147 (530) T protein:vir:38 68 ANAVQLHQDHIVGSFFRLSYRPSWRYLGINEEDSRAFSRDVEAAWNEYAEDDFCGIDAERKRTFTMMIREGVAMHAFNGE 147 (530) T ss_pred HHHHHHHHHHhhCCCceeeeccchhhcCCCHhHHHHHHHHHHHHHHHhhcCCCcEEeeeccCCHHHHHHHHHHHHhhCCc Confidence 33333222222111 1 111 123444555444 57889999 Q ss_pred ceEEEeeCCC-C--ceEEEEEeCcceeeccc---cCc---------------eeEEEcC--Cc----------eEEEEec Q lcl|Aclame:pro 111 AFLEKRYSTT-G--KVIRLETSPAKYTRRGV---EED---------------VYWWVPS--FN----------EPTAFAP 157 (344) Q Consensus 111 ay~~~~r~~~-G--~~~~L~pl~~~~~~~~~---~~~---------------~~~~~~~--~~----------~~~~~~~ 157 (344) +|+.+.+... | .++.|..|+|..+.... ++. .||.... .+ ....+++ T Consensus 148 ~~~~~~~~~~~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v~a 227 (530) T protein:vir:38 148 LCVQATWDSDSTRLFRTQFKMVSPKRVSNPNNIGDTRNCRAGVKINDSGAALGYYVSDDGYPGWMAQNWTYIPRELPGGR 227 (530) T ss_pred eEEEeeeccCCCCccceEEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEEeeccCCCccccccceeeeeeccCh Confidence 9998876533 3 36778888887654211 111 1343321 11 1233566 Q ss_pred ccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCC----------CHHHHHHHHHH Q lcl|Aclame:pro 158 GSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQ----------DRNDIEMLREN 227 (344) Q Consensus 158 ~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~----------~~e~~~~l~~~ 227 (344) .+|||+..+.-..+..|+|.+..++..+.--..-.+....--+=.+.-.++|+...+.. .+++.+.+... T Consensus 228 ~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (530) T protein:vir:38 228 PSFIHVFEPMEDGQTRGANAFYSVMEQMKMLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFILGADNKEQQSKLTGW 307 (530) T ss_pred hHeEeeccccCCCcccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeeccCCccccccccccCCccccccccccc Confidence 79999998876678899999999887766555444444444444555555655322110 11111122222 Q ss_pred HHHhhcc-------cccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHh-ccccccccccc Q lcl|Aclame:pro 228 MVKSKGR-------NNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLM-GGKPENVGSLG 299 (344) Q Consensus 228 ~~~~~g~-------~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~ll-G~~~~~~~~~~ 299 (344) .....+. =..|.+..|. .|.+++.+.......+|.+..+.....||+.+|||-+.| |.. .+.+|| T Consensus 308 ~~~~~~~~~~~~~~l~pG~i~~L~-----pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D~--s~~nYS 380 (530) T protein:vir:38 308 LGEMAAYYSAAPVRLGGARVPHLL-----PGDSLNLQSAQDTDNGYSTFEQSLLRYIAAGLGVSYEQLSRNY--SQMSYS 380 (530) T ss_pred chhhhhcccccceeccCceeeecC-----CCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhccc--ccccHH Confidence 1111111 1234454553 466677776665567899999999999999999998866 543 345788 Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH-H-----HHhh----Cccceec-cccccccCCC Q lcl|Aclame:pro 300 DIEKVAKVFVRNELIPLQDRIRE-I-----NGWI----GQEVIRF-KNYSLDTDNG 344 (344) Q Consensus 300 n~e~~~~~f~~~~l~P~~~~ie~-l-----n~~L----~~~~irf-~~y~l~~d~g 344 (344) ++.+....|.+.. .-++..+.. + -.|| ....+.. ....++|... T Consensus 381 S~R~~~~e~~r~~-~~~q~~~~~~~~~pi~~~wl~~av~~G~i~~p~~~~~~~~~~ 435 (530) T protein:vir:38 381 TARASANESWAYF-MGRRKFVASRQACQMFLCWLEEAIVRRVVTLPSKARFSFQEA 435 (530) T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHcCCccCCCCCCCCchhh Confidence 7777666655432 222222211 1 1122 1111111 1112222222 No 122 >protein:vir:79538 Length: 502 # NCBI annotation: putative portal protein # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272517;genbank:gi:148609386;genbank:GeneID:5204374 Probab=98.72 E-value=1e-09 Score=69.91 Aligned_cols=317 Identities=10% Similarity=-0.018 Sum_probs=146.4 Q ss_pred CCCCCCCCCCcchhhcc--ccccceeEEEcCCceecc--CcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMT--ASAPKMEAFTFGEPVPVL--DRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPI 76 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~--~~~~~~~~f~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i 76 (344) .|=++.-++..+..... .++.... ..++.+.. ...++..+... -...-..+.+.+++..+++ T Consensus 11 ~sP~~~~~R~~ar~~~~~y~aa~~~r---~~~~~~~~~s~~~~~~~~~~~-----------lr~RaRdl~rNn~~a~~av 76 (502) T protein:vir:79 11 FSPGWKAARLRSRAVIQAYEAVKTTR---THKARRENRTADQLSQYGAVS-----------LREQARYLDNNHDLVIGVF 76 (502) T ss_pred cChHHHHHHHhhHHHHhhccccCccc---ccCCCCCCCChHHHHHHHHHH-----------HHHHHHHHHhcChHHHHHH Confidence 22111111111111110 0000000 00111111 11111111000 0000112333444444444 Q ss_pred hhcchhhHHh--hh----------------------------cCC----CCCHHHHHHHH-HHHHhcCCceEEEeeCC-- Q lcl|Aclame:pro 77 YVKRNILAST--FI----------------------------PHP----WLSQQDFSRFV-LDFLVFGNAFLEKRYST-- 119 (344) Q Consensus 77 ~~k~n~~~~~--~~----------------------------pnp----~~~~~~~~~~~-~d~ll~Gnay~~~~r~~-- 119 (344) ...++.+..+ +. .|+ .++++.++.++ ..++..|++|+.+++.. T Consensus 77 ~~~~~nvVG~ggi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~~~~~~~~ 156 (502) T protein:vir:79 77 DKLEERVVGKNGIIVEPHPVLRNGAIARDLAAEIRTRWSEWSVSPEVTGQFTRPMLERLMLRTWLRDGEVFAQMVSGRIN 156 (502) T ss_pred HHHHHhhccCCceeeeeccCCCChhHHHHHHHHHHHHHHHhhcCcCccccCCHHHHHHHHHHHHHhCCceEEEEeecccC Confidence 4333333321 11 111 23344444444 57889999999886543 Q ss_pred -----CCceEEEEEeCcceeecccc--------------Cc--eeEEEcC------CceEEEEecccEEEecCCCCCCCc Q lcl|Aclame:pro 120 -----TGKVIRLETSPAKYTRRGVE--------------ED--VYWWVPS------FNEPTAFAPGSVFHLLEPDINQEL 172 (344) Q Consensus 120 -----~G~~~~L~pl~~~~~~~~~~--------------~~--~~~~~~~------~~~~~~~~~~eIih~~~~~~~~~~ 172 (344) .+.++.|..|+|..+..... +. .||.... ..+...+++++|||+..+.-.++. T Consensus 157 ~~~~g~~~~l~lq~iepd~l~~~~~~~~~i~~GVe~d~~Gr~~aY~i~~~hPgd~~~~~~~rvpA~~vlH~f~~~r~gQ~ 236 (502) T protein:vir:79 157 SLTPSAGVHFWLEALEPDFIPMTSDESNRLNQGVFVDDWGRPEKYLVYKSRPVSGRQMETKEVDAERMLHLKFVRRLHQM 236 (502) T ss_pred ccCCCcccceEEEEecchhcCCCCCCCCeeEeeeEECCCCceEEEEEeecCCCCCcccceeEechhheEEeecccCCccc Confidence 33577889998876642211 11 1333221 234567899999999987766788 Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHH-HHhhccccccccc-ccCCCCccc Q lcl|Aclame:pro 173 YGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENM-VKSKGRNNFKNLF-LYAPQGKAD 250 (344) Q Consensus 173 ~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~-~~~~g~~n~~~~~-vl~~~~~~~ 250 (344) .|+|.+..++..+.--..-.+....--+=.+...++|+..++.... -+..-..- +.....+ .|.++ .| .. T Consensus 237 RGis~lapvl~~l~~l~~~~dael~~a~i~A~~~~fi~~~~~~~~~--~~~~~~~~~~~~~~l~-pG~i~~~L-----~p 308 (502) T protein:vir:79 237 RGTSLLSGVLIRLSALKEYEDSELTAARIAAALGMYIRKGDGQSYE--PDGNGSKENERELTIQ-PGIIYDDL-----KP 308 (502) T ss_pred cCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCcccc--cccCCCCCcccccccc-CCcccccc-----CC Confidence 9999999988877665555554444444456666676654321100 00000000 0000111 23332 24 34 Q ss_pred cceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHh-ccccccccccccHHHHHHHHHHHHH-----------HHHHH Q lcl|Aclame:pro 251 GIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLM-GGKPENVGSLGDIEKVAKVFVRNEL-----------IPLQD 318 (344) Q Consensus 251 g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~ll-G~~~~~~~~~~n~e~~~~~f~~~~l-----------~P~~~ 318 (344) |.+++....+..-..|.+..+.....||+..|||-+.| |. -+++||++......|.+... +|+.+ T Consensus 309 Ge~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D---~s~nySs~R~~~~e~~r~~~~~q~~~~~~~~~pi~~ 385 (502) T protein:vir:79 309 GEEIGMVKSDRPNPNLETFRNGQLRAVAAGSRLSFSSTARN---YNGTYSAQRQELVESTDGYLILQDWFIGAVTRPMYR 385 (502) T ss_pred CceeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 66677776655567899999999999999999997765 44 23488888776666654322 22222 Q ss_pred HHHHHHHhhCccceecccc-------ccc--------cCCC Q lcl|Aclame:pro 319 RIREINGWIGQEVIRFKNY-------SLD--------TDNG 344 (344) Q Consensus 319 ~ie~ln~~L~~~~irf~~y-------~l~--------~d~g 344 (344) .+ |...+....|..-+| ..+ .|.. T Consensus 386 ~~--l~~a~l~G~i~~p~~~~~~~~~~~~W~~p~~~~iDP~ 424 (502) T protein:vir:79 386 AW--LKQAVASGVIRLPRDLDRSSLYTAVYSGPVMPWIDPV 424 (502) T ss_pred HH--HHHHHHcCCCCCCCCCCchhhcceeeecCCccccChH Confidence 21 111111111111111 000 1111 No 123 >protein:vir:1986 Length: 512 # NCBI annotation: Hypothetical protein # Family: family:all:313 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050633;genbank:gi:9633520;genbank:GeneID:2636304 Probab=98.72 E-value=8.6e-08 Score=59.31 Aligned_cols=322 Identities=10% Similarity=0.025 Sum_probs=176.2 Q ss_pred CCCCCCCCCCcchh-----hccccccce-eEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHH-HHHhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAK-----TMTASAPKM-EAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLA-KSLRAAVHHS 73 (344) Q Consensus 1 m~~~~~~~~~~~~~-----~~~~~~~~~-~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~-~~~~~~~~~~ 73 (344) ||+=--..-.|... ..++....+ ..++ +.|..-++-..+-.-+....+|+.- ....|. ++.+..+|.. T Consensus 1 m~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~gltp~~l~~iL~~a~~gd~~----~~~~L~~dm~~~D~hi~ 75 (512) T protein:vir:19 1 MGRILDISGQPFDFDDEMQSRSDELAMVMKRTQ-EHPSSGVTPNRAAQMLRDAERGDLT----AQADLAFDMEEKDTHLF 75 (512) T ss_pred CcceeCCCCCccccccccccccchhcccchhhc-cccccCCCHHHHHHHHHHhhCCCHH----HHHHHHHHHHhhChHHH Confidence 65432111111110 001110000 1111 1232223322322333333444332 112232 3445677888 Q ss_pred hhhhhcchhhHHh---hhcCCCCCH----------------HHHHHHH---HHHHhcCCceEEEee---CCCCceEEEEE Q lcl|Aclame:pro 74 SPIYVKRNILAST---FIPHPWLSQ----------------QDFSRFV---LDFLVFGNAFLEKRY---STTGKVIRLET 128 (344) Q Consensus 74 ~~i~~k~n~~~~~---~~pnp~~~~----------------~~~~~~~---~d~ll~Gnay~~~~r---~~~G~~~~L~p 128 (344) +|+..++..++.. +.|....+. ..|..++ ++.+.+|-+.+|++. ++...|..+.+ T Consensus 76 s~l~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~f~~~~~~lldA~~~G~s~~Ei~w~~~~g~~~~~~~~~ 155 (512) T protein:vir:19 76 SELSKRRLAIQALEWRIAPARDASAQEKKDADMLNEYLHDAAWFEDALFDAGDAILKGYSMQEIEWGWLGKMRVPVALHH 155 (512) T ss_pred HHHHHHHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhhcceeeeeEeeeeCCceeeeeeee Confidence 8887766655542 333221110 0133334 355679999999976 44456888999 Q ss_pred eCcceeeccccCceeEEEcCC-ceEEEEeccc-EEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCc Q lcl|Aclame:pro 129 SPAKYTRRGVEEDVYWWVPSF-NEPTAFAPGS-VFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAG 206 (344) Q Consensus 129 l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e-Iih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~ 206 (344) .++.+.+...++........+ ..-..+++.. |+|.... ..+..||.+.+..+.-.......+.++...|...-+.|- T Consensus 156 r~~~~f~~~~~~~~~lr~~~~~~~G~~l~~~k~i~~~~~~-~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~ 234 (512) T protein:vir:19 156 RDPALFCANPDNLNELRLRDASYHGLELQPFGWFMHRAKS-RTGYVGTNGLVRTLIWPFIFKNYSVRDFAEFLEIYGLPM 234 (512) T ss_pred eccccceeccCCCcEEEecCCCCCceeecCCceEEEeccC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe Confidence 999888776665544333332 2334566655 4454433 356779999999999999999999999999999988998 Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChH Q lcl|Aclame:pro 207 YIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQ 286 (344) Q Consensus 207 gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~ 286 (344) -+-+++ +..++++++++.+.+.+..+ ++ .+|+ |. ...++++..+. ...+-|.+.-++-..+|+++ T Consensus 235 ~igky~-~~a~~~ek~~L~~al~~~~~--~a--~~ii-P~--~~~ie~~ea~~-~~~~~y~~li~~~d~~Isk~------ 299 (512) T protein:vir:19 235 RVGKYP-TGSTNREKATLMQAVMDIGR--RA--GGII-PM--GMTLDFQSAAD-GQSDPFMAMIGWAEKAISKA------ 299 (512) T ss_pred eEEecC-CCCCHHHHHHHHHHHHHHhh--Cc--EEEe-cC--CceEEEeecCC-CCHHHHHHHHHHHHHHHHHH------ Confidence 777764 45678888888888877532 22 2233 22 23455555433 33355888888999999987 Q ss_pred Hhcccc-cc---ccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeccc---------cccccCCC Q lcl|Aclame:pro 287 LMGGKP-EN---VGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFKN---------YSLDTDNG 344 (344) Q Consensus 287 llG~~~-~~---~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~~---------y~l~~d~g 344 (344) ++|..- .+ +++++. .+....-....+.-.++.|++ ||+.|-..++.++. ..+.|+.- T Consensus 300 iLGqtlTs~~g~~Gs~a~-~~vh~ev~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~~~~~~p~~~f~~~ 370 (512) T protein:vir:19 300 ILGGTLTTEAGDKGARSL-GEVHDEVRREIRNADVGQLARSINRDLIYPLLALNSDSTIDINRLPGIVFDTS 370 (512) T ss_pred HhhhhhcccccccchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEecCC Confidence 344332 12 122222 223333345556666777765 77766554443331 13444433 No 124 >protein:vir:107880 Length: 491 # NCBI annotation: gp29 # Family: family:all:313 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024702;genbank:gi:48696939;genbank:GeneID:2845968 Probab=98.71 E-value=4.7e-08 Score=60.74 Aligned_cols=311 Identities=12% Similarity=0.126 Sum_probs=162.8 Q ss_pred CCCCC------------CCCCCcchhhccccccceeEEEcCC-ceeccCcchhhhhhhhhccchhhhccccHHHHHHHHh Q lcl|Aclame:pro 1 MSKKK------------GKTPQPAAKTMTASAPKMEAFTFGE-PVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLR 67 (344) Q Consensus 1 m~~~~------------~~~~~~~~~~~~~~~~~~~~f~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~ 67 (344) |+..= .+++... ...........++++- |.. ...+++- ..+ ++....++ . T Consensus 1 m~~~i~~~~g~p~~~~~~~~~~~~--~ia~~~~~~~~~~~~~~~~~---~~~iLr~----~~~-------~~~~y~~m-~ 63 (491) T protein:vir:10 1 MSKGLWVSPTEFVTFGEPDKSLSS--QIATRARSIDFFALGMYLPN---PDPVLKA----LGK-------DIRVYREL-R 63 (491) T ss_pred CCCceeCCCCCccCcccCChHHHH--HHHhhhcccccccccCCccc---hHHHHHh----cCC-------CHHHHHHH-h Confidence 44321 0001111 1111111111122211 100 0011110 011 11122233 3 Q ss_pred hhhhhhhhhhhcchhhHHh---hhcCCCCCH--H---------HHHHH---HHHHHhcCCceEEEeeCCCC---ceEEEE Q lcl|Aclame:pro 68 AAVHHSSPIYVKRNILAST---FIPHPWLSQ--Q---------DFSRF---VLDFLVFGNAFLEKRYSTTG---KVIRLE 127 (344) Q Consensus 68 ~~~~~~~~i~~k~n~~~~~---~~pnp~~~~--~---------~~~~~---~~d~ll~Gnay~~~~r~~~G---~~~~L~ 127 (344) ..+|..+|+..++..++.. +.|+..... + .|..+ +++.+.+|.+.+|+++...| .|..|. T Consensus 64 ~D~~i~s~l~~Rk~av~~~~w~i~~~~~~~~~~e~v~e~l~~~~~~~~l~~~lda~~~G~s~~Ei~w~~~~g~~~~~~l~ 143 (491) T protein:vir:10 64 ADAHVGGCVRRRKAAVKALEWGLDRGKAKSRVAKSIADVFADLDLSRIVTEMLDAVLYGYQPMEITWGKVGNYIVPIDVV 143 (491) T ss_pred hChHHHHHHHHHHHHHhCCCcEEecCCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhhhcceeEEEEEeecCCeeEEEEee Confidence 5777777776655444321 122111110 1 12223 34667899999999875443 467899 Q ss_pred EeCcceeeccccCceeEEEcCC-ceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCc Q lcl|Aclame:pro 128 TSPAKYTRRGVEEDVYWWVPSF-NEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAG 206 (344) Q Consensus 128 pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~ 206 (344) +.|+.+++...++...+....+ .....+++...|+.++.......||.+.+..+.........+.++...|.+.-+.|- T Consensus 144 ~r~~~~f~~d~~~~l~~~~~~~~~~g~~l~~~k~i~~~~~~~~~~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~ 223 (491) T protein:vir:10 144 GKPADWFVYDPENQLRFRSKDHWMQGEELPARKFLVPRQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPM 223 (491) T ss_pred eecccceeeccCCceEEecCCCCCCcceecCCCEEEEEecCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCe Confidence 9999988877776666655443 344566776655554443445689999999999999999999999999999999998 Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChh-HHHHHHHHHhhHHHHHHHhcCCh Q lcl|Aclame:pro 207 YIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVAT-KDDFFNIKKASAADLLDAHRIPF 285 (344) Q Consensus 207 gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~-d~qf~e~~~~~~~~I~~~fgVPp 285 (344) -+.+++ +..++++++++.+.+.+..+ ++ .+|+ |. ...++++..+.+.. -.-|.+.-++-.++|+++. T Consensus 224 ~igky~-~~a~~~ek~~l~~al~~~~~--~a--~~vi-P~--~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~i---- 291 (491) T protein:vir:10 224 LVGKHP-RSASDGEKNLLLDCLEDMVQ--DA--VAVV-PD--DSSIEIKEAAGKTGSADVYERLLHFCRGEVSIAL---- 291 (491) T ss_pred EEEecC-CCCCHHHHHHHHHHHHHHhc--Cc--EEEe-cC--CceeEEEecCCCCCChhHHHHHHHHHHHHHHHHH---- Confidence 888774 45688888888888877532 22 2233 21 23455555443332 2347777778888888763 Q ss_pred HHhccccc--cccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceecc-----ccccccCCC Q lcl|Aclame:pro 286 QLMGGKPE--NVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFK-----NYSLDTDNG 344 (344) Q Consensus 286 ~llG~~~~--~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~-----~y~l~~d~g 344 (344) +|..-+ ++++++..+... .-....+.-.+..+++ +|. |-..++.++ .+.|.|++= T Consensus 292 --LGqtlTt~~~gs~a~~~vh~-~v~~di~~~D~~~i~~tln~-li~~l~~~N~~~~~~p~f~~~~~ 354 (491) T protein:vir:10 292 --LGQNQTTEATSTRASAQAGL-EVTDDIRDGDKAVVSEAMNM-LIRWICDLNFDGADRPVFDMWEQ 354 (491) T ss_pred --hhhhcccCcccchhHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCcceEEecCc Confidence 343322 233333322222 2233344445555554 553 433332222 223333322 No 125 >protein:vir:98816 Length: 446 # NCBI annotation: hypothetical protein # Family: family:all:32558 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851097;genbank:gi:117530254;genbank:GeneID:4484480 Probab=98.67 E-value=3.1e-08 Score=61.77 Aligned_cols=328 Identities=10% Similarity=0.066 Sum_probs=160.6 Q ss_pred CCCCCCCCCCcc--hhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPA--AKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYV 78 (344) Q Consensus 1 m~~~~~~~~~~~--~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~ 78 (344) |.---.-.|.|+ ....+.....-.+..+-+|-+++.. ..++.++. +....++.+..+|..+++.. T Consensus 1 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~D~~lr~----------~gg~~~~~---~~l~~~m~e~D~~v~s~l~~ 67 (446) T protein:vir:98 1 MNMEVRNAPTPAIRRRTIYAMEHLGLATSYLSEDGGYKR----------AGKPTYQQ---LSAWDEAAQTEPIIAQGLDS 67 (446) T ss_pred CcccccCCCchhhhhhhhhccccchhhcccCCcchHhhh----------cCCChHHH---HHHHHHHHhcchHHHHHHHH Confidence 333333333333 2222222111112223344444321 12222211 11112344556666666665 Q ss_pred cchhhHHh---hhcCC------------CCCHHHHHHHHHHHHhcCCceEEEeeCCC-C--ce-------EEEEEeCcce Q lcl|Aclame:pro 79 KRNILAST---FIPHP------------WLSQQDFSRFVLDFLVFGNAFLEKRYSTT-G--KV-------IRLETSPAKY 133 (344) Q Consensus 79 k~n~~~~~---~~pnp------------~~~~~~~~~~~~d~ll~Gnay~~~~r~~~-G--~~-------~~L~pl~~~~ 133 (344) ++.-+... +.|-. .+..+.....++|.+.+|-++.|++.... | .| +.+.|++... T Consensus 68 Rk~av~~~~w~V~p~~~~~a~~v~~~l~~~~~~~~~~~~ldai~~G~s~~Eivw~~~~g~~~p~~~~d~~~~~~~~~~r~ 147 (446) T protein:vir:98 68 IALSVLNKVGPYQHGDKRIKKFIDDQLRNRAKTWISHCVKSIMTYGFSLSEQIYAHGARDNMPATVLDDIVNYHPLQVML 147 (446) T ss_pred HHHHhhcCCceecCccHHHHHHHHHHHhhcCchhHHHHHHHHHhhCceeeeEEEeecccccccchhhcccccccccccee Confidence 54333221 11110 01122233446688899999999986432 1 22 2334443322 Q ss_pred eeccccCce----------e-----------------EEEcCCceEEEEecccEEEecCCCCCCCcccccchhhhHHHHH Q lcl|Aclame:pro 134 TRRGVEEDV----------Y-----------------WWVPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAW 186 (344) Q Consensus 134 ~~~~~~~~~----------~-----------------~~~~~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~ 186 (344) .. ..++.. + ......+....+|....+++++....+..||.+.+..+.-... T Consensus 148 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iP~~kfi~~~~~~~~~~p~G~gLlr~~~w~~~ 226 (446) T protein:vir:98 148 IA-NDNGRIVDGDTVTASQYKSGYWVPLPPYRIGDPPKKVDVVGSHVRLPSHKRLFINYNTKGNNPWGTSCLTSVLDYSI 226 (446) T ss_pred ee-ccCCccccccccchhhcccccccCcccchhhhhhhhcccCcccccccccceEEEEecCCCCCccccchHHHHHHHHH Confidence 11 100000 0 0011223345577778777776655667899999999999999 Q ss_pred HHHHHHHHHHHHHHccCCCceEEEecCCCCC-----HH---HHHHHHHHH-HHhhcccccccccccCCCCccccceeeec Q lcl|Aclame:pro 187 LNESATLFRRKYYENGAHAGYIMYVTDAVQD-----RN---DIEMLRENM-VKSKGRNNFKNLFLYAPQGKADGIKIIPL 257 (344) Q Consensus 187 ~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~-----~e---~~~~l~~~~-~~~~g~~n~~~~~vl~~~~~~~g~~~~pl 257 (344) ....+.++...|.+.-+.|--+.+++.+..+ ++ ..+.+.+.+ ++....+..+ ..|+.....+.|++++=+ T Consensus 227 fK~~~~~~w~~f~E~yG~P~~vGkyp~ga~~~~~~~~~~~~~~~~~~~~L~~av~~~~~da-~~ii~~~~~P~g~eie~~ 305 (446) T protein:vir:98 227 FKRAFRDMMLIALDRYGTPLIYVIVPPGNTGVVEEAPDGTEITTTIAEQAEDALRRLSTDS-GLVLTQLSKEQPVQVGAL 305 (446) T ss_pred HHHhhHHHHHHHHhHcCCceeEEeecCCCCcccccchhHHHHHHHHHHHHHHHHHhccccc-eeeeecccCCCCceEEee Confidence 9999999999999998899888887543221 11 122223333 3322221112 222212222456666544 Q ss_pred cCChh-HHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceecc Q lcl|Aclame:pro 258 SEVAT-KDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFK 335 (344) Q Consensus 258 ~~~~~-d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~ 335 (344) +.... -..|.+.-++--.+|+++....---+|...+.+++++-.+....+ ..+-+.--++.|++ +|+.|-..+++++ T Consensus 306 ea~~~~~~~~~~~i~~~d~~IskaiLg~~Ltl~~~~~~~GS~ala~vh~~V-~~d~~~aDa~~i~~tln~~Li~~l~~lN 384 (446) T protein:vir:98 306 TTGNNFSDSFERAISLCDNNMLMGMGIPNLLVQNRETTFGTGRASEIQLEL-FDGKINSIFDTVIHAFTEQVIGNLIRLN 384 (446) T ss_pred ccccCChhhHHHHHHHHHHHHHHHHhcccccccccccccchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhC Confidence 44332 234888888889999998877654455433333333323333333 33445666777765 7776655444332 Q ss_pred -------------ccccccCCC Q lcl|Aclame:pro 336 -------------NYSLDTDNG 344 (344) Q Consensus 336 -------------~y~l~~d~g 344 (344) ...+++.+- T Consensus 385 f~~~~~~~~~~~~~~~~~~~e~ 406 (446) T protein:vir:98 385 FDPALYPLASNTGYITRLPGRA 406 (446) T ss_pred CCccccccccccccceeccCCh Confidence 112333232 No 126 >protein:vir:99853 Length: 488 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164068;genbank:gi:56692600;genbank:GeneID:3192581 Probab=98.65 E-value=1.1e-07 Score=58.77 Aligned_cols=311 Identities=11% Similarity=0.037 Sum_probs=162.3 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) ++|+ .-.....+........-+|.++- ..++.+++ .....|++ ....++ ...+|..+|+..++ T Consensus 1 v~~~-----~l~~e~at~~~~~d~~~~~~~~l-~~~~~~il---~~a~~g~~-------~~y~~l-~~D~~i~s~l~~rk 63 (488) T protein:vir:99 1 MEKP-----ALGREIATSGDGRDITRPFISGL-QVPNDSIL---QRRGGNDL-------RVYEEI-LSDAQVKTVWGQRQ 63 (488) T ss_pred CCcc-----chhHHHHHHHhhhhhhccccCCC-CCCChHHH---HhhccCCH-------HHHHHH-hhChHHHHHHHHHH Confidence 2111 11111111110000000111110 01111121 11111111 112223 23666677766554 Q ss_pred hhhHHh---hhcCCCC-----------------CHHHHHHHHHHHHhcCCceEEEeeCCC---CceEEEEEeCcceeecc Q lcl|Aclame:pro 81 NILAST---FIPHPWL-----------------SQQDFSRFVLDFLVFGNAFLEKRYSTT---GKVIRLETSPAKYTRRG 137 (344) Q Consensus 81 n~~~~~---~~pnp~~-----------------~~~~~~~~~~d~ll~Gnay~~~~r~~~---G~~~~L~pl~~~~~~~~ 137 (344) ..++.. +.|+... .+..+-.-+++.+.+|-+..|+++... ..|..|.+.|+.++... T Consensus 64 ~av~~~~w~i~p~~~~~~~~~~ae~v~~~l~~~~~~~~l~~~lda~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~d 143 (488) T protein:vir:99 64 LAVVSREWKVEAGGDRPIDQAAAEHLEQQLQRVGWDRVTSKMLFGVFYGYAVSELIYGRDDRYITLEAIKVRNRRRFRYD 143 (488) T ss_pred HHHhcCCceEEcCCCChHHHHHHHHHHHHHhCCCHHHHHHHHHhhhhhcceeEEEEEeecCCeeeEeeeeeecccceeec Confidence 433321 2222111 122222223466789999999987543 35678999999888876 Q ss_pred ccCceeEEEcCC-ceEEEEec--ccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCC Q lcl|Aclame:pro 138 VEEDVYWWVPSF-NEPTAFAP--GSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDA 214 (344) Q Consensus 138 ~~~~~~~~~~~~-~~~~~~~~--~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~ 214 (344) .+++..+....+ .....++. .=|+|..... .+..||.+.+..+...........++...|.+.-+.|--+-+++.. T Consensus 144 ~~~~l~~~~~~~~~~g~~lp~~~~~i~~~~~~~-~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~ 222 (488) T protein:vir:99 144 QDGGLRLLTPNNMFEGEPCPAPYFWHFSTGADN-DDEPYGLGLAHWLYWPVFFKRNGIKFWLIFLDKFGMPTAVGRYDDK 222 (488) T ss_pred CCCceEEeccCCCCCccccccCceEEEEeecCC-CCCcccchHHHHHHHHHHHHHhhHHHHHHHHHHcCCceeeeecCCC Confidence 666654444333 22344433 2255554444 3467899999999999999999999999999999999877776544 Q ss_pred CCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhcccc-- Q lcl|Aclame:pro 215 VQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKP-- 292 (344) Q Consensus 215 ~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~-- 292 (344) ..++++++++.+.+.+..+ ++ .+|+ |. ...++++..+... -+-|.+.-++-.++|+++. +|..- T Consensus 223 ~a~~~ek~~l~~av~~~~~--~~--~~vi-P~--~~~ie~~ea~~~~-~~~~~~li~~~d~~Isk~i------LGqtlts 288 (488) T protein:vir:99 223 TATPEDKAKLLAALHAIQT--DS--AIIM-PA--GMQAELLEAGRSG-TADYKTLHDTMDATIAKVG------LGQVAST 288 (488) T ss_pred CCCHHHHHHHHHHHHHHhc--Cc--EEEe-cC--CceeEEeecCCCC-hHHHHHHHHHHHHHHHHHH------hhhhhcc Confidence 5688888888888876532 11 2333 22 2345666554333 2458888888889998873 33222 Q ss_pred -ccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceecc-----ccccccCCC Q lcl|Aclame:pro 293 -ENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEVIRFK-----NYSLDTDNG 344 (344) Q Consensus 293 -~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~~~irf~-----~y~l~~d~g 344 (344) .++++++..+.. ..-....+.-.+..|++ +|+.|-..++.++ +..+.|+-- T Consensus 289 ~~~~Gs~a~~~vh-~~v~~d~~~aDa~~i~~tln~~li~~l~~~N~~~~~~p~~~~~~~ 346 (488) T protein:vir:99 289 QGTPGRLGNDDLQ-ADVRLDLVKADADLICESFNLGPARWLTEWNFPGAQPPRVYRVIE 346 (488) T ss_pred cccccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcCCceeEecCC Confidence 122233333333 33345556667777765 7776655444332 112222222 No 127 >protein:vir:96738 Length: 505 # NCBI annotation: putative phage-related protein # Family: family:all:47 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039817;genbank:gi:126010916;genbank:GeneID:5076248 Probab=98.60 E-value=5.4e-09 Score=65.89 Aligned_cols=319 Identities=9% Similarity=-0.009 Sum_probs=150.2 Q ss_pred CCCCCCCCCCc----chhhcccccc-c--eeEEEcCCc-----------eeccCcchhhhhhhhhccchhhhccccHHHH Q lcl|Aclame:pro 1 MSKKKGKTPQP----AAKTMTASAP-K--MEAFTFGEP-----------VPVLDRRDILDYVECISNGRWYEPPVSFTGL 62 (344) Q Consensus 1 m~~~~~~~~~~----~~~~~~~~~~-~--~~~f~~~~p-----------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 62 (344) |.+-.++..-- +.......++ + ...|.-+.+ .......++..+... +... T Consensus 1 ~~r~~~~~~~~dr~i~~~~~~~~~~~~~~~~~y~aa~~~r~~~~w~~~~~~~s~~~~i~~~~~~------------lr~R 68 (505) T protein:vir:96 1 MKRAEKKPSLAQRMVNWAWYRYVEPQKNAARAFEAARRDRLGKAWLRRASRLSADEEIYADLAS------------LVQR 68 (505) T ss_pred CCCCccccchhhcccchhhhhhHHHHHHhhhhcccccCCCccccccCCCCCCChHHHHHHHHHH------------HHHH Confidence 65555443211 1000000000 0 011111111 000001111111100 0111 Q ss_pred H-HHHhhhhhhhhhhhhcchhhHH-h-hh------------------------------cC----CCCCHHHHHHH-HHH Q lcl|Aclame:pro 63 A-KSLRAAVHHSSPIYVKRNILAS-T-FI------------------------------PH----PWLSQQDFSRF-VLD 104 (344) Q Consensus 63 ~-~~~~~~~~~~~~i~~k~n~~~~-~-~~------------------------------pn----p~~~~~~~~~~-~~d 104 (344) + .+.+.+++..+++....+.+.. . ++ +| ..+++..++.+ +.. T Consensus 69 aRdL~rNn~~a~~av~~~~~nvVG~~Gi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~~~D~~g~~~f~~lq~l~~r~ 148 (505) T protein:vir:96 69 AREQSINNPYAKRFYQLLKNNVIGPKGMTFQSRVKRRNGKPDDRANTLIEGNWQQWIKKGNCDVTGRYHFVTLLHLWMET 148 (505) T ss_pred HHHHHhcChHHHHHHHHHHHHhcCCCcceeeecCCcccccccHHHHHHHHHHHHHhcCCcCcceeccCCHHHHHHHHHHH Confidence 1 2333444444444433333221 1 11 12 12334445554 457 Q ss_pred HHhcCCceEEEeeCC-CCceEEEEEeCcceeeccc-----cCc---------------eeEEEcC------------Cce Q lcl|Aclame:pro 105 FLVFGNAFLEKRYST-TGKVIRLETSPAKYTRRGV-----EED---------------VYWWVPS------------FNE 151 (344) Q Consensus 105 ~ll~Gnay~~~~r~~-~G~~~~L~pl~~~~~~~~~-----~~~---------------~~~~~~~------------~~~ 151 (344) ++..|.+|+...+.. ...++.|..|+|..+.... ++. .||.... ... T Consensus 149 ~~~dGE~f~~~~~~~~~~~~~~lqliepd~l~~~~n~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~hPgd~~~~~~~~~~~ 228 (505) T protein:vir:96 149 LARDGEVLVREHRGYPNKWGYALQILECDRLDLNYNADLQNGNRIRMSIELDAWERPVAYHLLVNHPGDNSYCYHYAGQT 228 (505) T ss_pred HhhCCceEEEEeecCCCCcceEEEEechhhcCCCCCcccCCcCeEEeceEECCCCceEEEEEeecCCCcccccccccccc Confidence 889999999886543 2346788888887664221 111 1333211 012 Q ss_pred EEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHh Q lcl|Aclame:pro 152 PTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKS 231 (344) Q Consensus 152 ~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~ 231 (344) ...+++.+|||+..+.-..+..|+|.+..++..+.--..-.+....--+=.+.-.++|+...+...+...+.-.+.. T Consensus 229 ~~rvpa~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~--- 305 (505) T protein:vir:96 229 YERVPADEIIHTFVPWRPHQNRGIPWTHASMVELHHIGEYRKSEMIAAELGAKKVGFYEQDPEAYDQPPEDDQGEIV--- 305 (505) T ss_pred ccccCHhHhhhhhcccCCccccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCccCCCccccccCccc--- Confidence 34578899999998876678899999999887766554444444444444555666676543322222111100000 Q ss_pred hcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHh-ccccccccccccHHHHHHHHHH Q lcl|Aclame:pro 232 KGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLM-GGKPENVGSLGDIEKVAKVFVR 310 (344) Q Consensus 232 ~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~ll-G~~~~~~~~~~n~e~~~~~f~~ 310 (344) . .-..|.+..|. .|.+++.+..+.....|.+..+.....||+..|||-+.| |.. .+.+||++.+....+++ T Consensus 306 ~-~l~pG~i~~L~-----pGe~i~~~~~~~p~~~~~~f~~~~lr~iaaglgi~ye~lt~D~--s~~nYSS~R~~~~e~~r 377 (505) T protein:vir:96 306 E-EVEAGTYQLLP-----YGIRFKEHKIDHPHTNFGAFVKSSLRGVAAGMGPAYNRLAHDL--EGVNFSSLRSGELDERD 377 (505) T ss_pred c-ccCCceeeecC-----CCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhccc--ccccHHHHHHHHHHHHH Confidence 1 11234555553 466777777665567899999999999999999998765 543 33578877776655544 Q ss_pred H-----------HHHHHHHHHHHHHHhhCccceeccccc-------------cc-cCCC Q lcl|Aclame:pro 311 N-----------ELIPLQDRIREINGWIGQEVIRFKNYS-------------LD-TDNG 344 (344) Q Consensus 311 ~-----------~l~P~~~~ie~ln~~L~~~~irf~~y~-------------l~-~d~g 344 (344) . -++|+...+. ...+....|....+. .. .|.. T Consensus 378 ~~~~~q~~~~~~~~~pi~~~~l--~~a~l~G~i~~p~~~~~~~~~~~w~~p~~~~iDP~ 434 (505) T protein:vir:96 378 LYKLLQFFVVTELLERVAGNLI--SMSLLTQALPLNMVDIDRLSQYAFQPRGWDWVDPA 434 (505) T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHcCCcCCCCccchhhceeeeccCCccccChH Confidence 3 3333333221 111111111111111 00 1111 No 128 >protein:vir:95542 Length: 548 # NCBI annotation: Putative portal protein # Family: family:all:47 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293348;genbank:gi:148912769;genbank:GeneID:5228194 Probab=98.53 E-value=6.1e-09 Score=65.62 Aligned_cols=319 Identities=10% Similarity=0.005 Sum_probs=145.2 Q ss_pred CCCCCCCCCCcchhh--cccccc-ceeEEEcCCc--------eeccCcchhhhhhhhhccchhhhccccHHHHH-HHHhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKT--MTASAP-KMEAFTFGEP--------VPVLDRRDILDYVECISNGRWYEPPVSFTGLA-KSLRA 68 (344) Q Consensus 1 m~~~~~~~~~~~~~~--~~~~~~-~~~~f~~~~p--------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~-~~~~~ 68 (344) |..=.+-...-++.. ....+. .+..|.-..+ .+.....++..+.. .+...+ .+.+. T Consensus 1 Mn~iDr~i~~~sP~~a~~R~~ar~~~~~y~aa~~~r~~~~~~~~~s~~~~i~~~~~------------~lr~RaRdL~rN 68 (548) T protein:vir:95 1 MNLIDRLLEPLAPELVARRLAAREAIQAYEAARPGRTHKAKRQPLGADTSLQKSAV------------SMREQCRKLDED 68 (548) T ss_pred CchHHhHhhhcchHHHHHHHHhHHHhccccccCccccccccCCCCChHHHHHHHHH------------HHHHHHHHHHhc Confidence 433221111111000 000000 0111111111 11101111110000 011111 23334 Q ss_pred hhhhhhhhhhcchhhHH----hhhcCC------------------------------CCCHHHHHH-HHHHHHhcCCceE Q lcl|Aclame:pro 69 AVHHSSPIYVKRNILAS----TFIPHP------------------------------WLSQQDFSR-FVLDFLVFGNAFL 113 (344) Q Consensus 69 ~~~~~~~i~~k~n~~~~----~~~pnp------------------------------~~~~~~~~~-~~~d~ll~Gnay~ 113 (344) +++..+++...++.+.. .+.|.+ .+++..++. ++..++..|++|+ T Consensus 69 n~~a~~av~~~~~nvVG~~G~~i~p~~l~~d~~~a~~l~~~ie~~w~~Wa~~~D~~g~~~f~~lq~l~~R~~~~dGE~f~ 148 (548) T protein:vir:95 69 HDLVTGLLDRLEERVVGGSGIGVEPLPLRLDGSVHAELAMEIRSAWAEWSLSPETSGELTRPQVERLMCRTWLRDGEGLA 148 (548) T ss_pred ChHHHHHHHHHHHhccCccccceeeeecCCCHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHHhCCceEE Confidence 44444444433333332 111211 223444444 3457789999999 Q ss_pred EEeeCC-------CCceEEEEEeCcceeecccc---------------Cc--eeEEEcC----------CceEEEEeccc Q lcl|Aclame:pro 114 EKRYST-------TGKVIRLETSPAKYTRRGVE---------------ED--VYWWVPS----------FNEPTAFAPGS 159 (344) Q Consensus 114 ~~~r~~-------~G~~~~L~pl~~~~~~~~~~---------------~~--~~~~~~~----------~~~~~~~~~~e 159 (344) .+.+.. ...+..|..|+|.++..... +. .||.... ......+++++ T Consensus 149 ~~~~~~~~~~~~g~~~~~~lqliepd~l~~~~~~~~~~i~~GIE~D~~Grp~aY~i~~~hPgd~~~~~~~~~~~rvpA~~ 228 (548) T protein:vir:95 149 QKLMGRVPNYTFATSVPFALELLEPDYLPFSYNNLSKGIVQGIERDTWRRKRAYHLLKDHPGNLQTLGGSLAVKRVEAER 228 (548) T ss_pred EeeecccccccCCcccceEEEEechhhcCCCCCCCCCceeeeeEECCCCceEEEEEeecCCCcccccccccceeeechhH Confidence 887542 22467888888876642111 11 1333221 12356789999 Q ss_pred EEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhccccccc Q lcl|Aclame:pro 160 VFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKN 239 (344) Q Consensus 160 Iih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~ 239 (344) |||+..+.-..+..|+|.+..++..+.--..-.+....--+=.+...++|+.+++.. +..+.-...-......+ .|. T Consensus 229 VlHif~~~r~gQ~RGvs~lapvl~~l~~l~~y~dael~~aki~A~~a~fi~~~~~~~--~~~~~~~~~~~~~~~~~-pG~ 305 (548) T protein:vir:95 229 IIHIAYRKRIGQNRGVPMLHAVLIRLADLKDYEESERVAARISAALAMYIKKGNPDS--YTVEPGKDRKNRTIPIA-PGM 305 (548) T ss_pred heecccccCCccccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCcc--ccCCCCccccccccccc-CCc Confidence 999998776678899999999887766555444444444444555566666543321 11100000000000011 122 Q ss_pred cc-ccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHh-ccccccccccccHHHHHHHHHHHH----- Q lcl|Aclame:pro 240 LF-LYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLM-GGKPENVGSLGDIEKVAKVFVRNE----- 312 (344) Q Consensus 240 ~~-vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~ll-G~~~~~~~~~~n~e~~~~~f~~~~----- 312 (344) ++ .| ..|.+++.++.+.....|.+..+.....||+.+|||-+.| |.. +++||++......|++.. T Consensus 306 iv~~L-----~pGe~i~~~~p~~p~~~~~~f~~~~lr~IAaglGipYe~ltgD~---s~nYSS~R~~l~e~~r~~~~~q~ 377 (548) T protein:vir:95 306 VFDDL-----EPGEDVGMIESNRPNPFLEGFRNGQLRMIGAGTRSTYSSVSRAY---DGTYSAQRQELVEGWLGYDLLQH 377 (548) T ss_pred ccccc-----CCCceeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhccc---chhHHHHHHHHHHHHHHHHHHHH Confidence 22 23 2356677776655567899999999999999999997765 442 348888877666555432 Q ss_pred ------HHHHHHHHHHHHHhhCccceecccc-------ccc--------cCCC Q lcl|Aclame:pro 313 ------LIPLQDRIREINGWIGQEVIRFKNY-------SLD--------TDNG 344 (344) Q Consensus 313 ------l~P~~~~ie~ln~~L~~~~irf~~y-------~l~--------~d~g 344 (344) ++|+...+. ...+....|..-.| ..+ .|.. T Consensus 378 ~~i~~~~~Pi~~~wl--e~a~l~G~i~lP~~~~~~~~~~~~W~~P~~~~iDP~ 428 (548) T protein:vir:95 378 EFIDYWCRPVYRSWL--QMYLLARKERLPADVDHRTLYAAVYQGPVMPWINPM 428 (548) T ss_pred HHHHHHHHHHHHHHH--HHHHHcCCcCCCCCCCchhheeeeeecCCccccChH Confidence 222222211 11111111111111 000 1111 No 129 >protein:vir:3420 Length: 533 # NCBI annotation: capsid component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040583;genbank:gi:9626247;genbank:GeneID:2703526 Probab=98.50 E-value=2.5e-08 Score=62.28 Aligned_cols=318 Identities=9% Similarity=-0.003 Sum_probs=145.5 Q ss_pred CCCCCCCCCCcchhhccccccc-------eeE-----EEcCCceeccC--cchhhhhhhhhccchhhhccccHHHHH-HH Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPK-------MEA-----FTFGEPVPVLD--RRDILDYVECISNGRWYEPPVSFTGLA-KS 65 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~-------~~~-----f~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~l~-~~ 65 (344) |.-. .+++......... ..+ -.+.++.|... ..++...... +...+ .+ T Consensus 1 ~~~p-----~~~~~~~~~~~~~~~~~~~y~~~a~~~~~~~~~w~p~~~s~~~~~~~~~~~------------lr~RaRdl 63 (533) T protein:vir:34 1 MKTP-----TIPTLLGPDGMTSLREYAGYHGGGSGFGGQLRSWNPPSESVDAALLPNFTR------------GNARADDL 63 (533) T ss_pred CCCc-----hhhhhhcccccchHHHHHhhhhccCCCCCcccccccCCCCHHHHHHHHHHH------------HHHHHHHH Confidence 2221 1111100000000 000 01111111111 1111111100 01111 23 Q ss_pred HhhhhhhhhhhhhcchhhHHh-hhc----------------------------------------CCCCCHHHHHHH-HH Q lcl|Aclame:pro 66 LRAAVHHSSPIYVKRNILAST-FIP----------------------------------------HPWLSQQDFSRF-VL 103 (344) Q Consensus 66 ~~~~~~~~~~i~~k~n~~~~~-~~p----------------------------------------np~~~~~~~~~~-~~ 103 (344) .+.+++..+++....+.+... +++ ...+++..++.+ +. T Consensus 64 ~rNn~~a~~av~~~~~nvVG~Gi~~~~~p~~~~lg~~~~~~~~~~~~ie~~w~~w~~~~~~~~D~~g~~~f~~~q~l~~r 143 (533) T protein:vir:34 64 VRNNGYAANAIQLHQDHIVGSFFRLSHRPSWRYLGIGEEEARAFSREVEAAWKEFAEDDCCCIDVERKRTFTMMIREGVA 143 (533) T ss_pred HhcChHHHHHHHHHHHHhhCCCceeeeccchhhcCCChhHHHHHHHHHHHHHHHhhcCccceeccccccCHHHHHHHHHH Confidence 333444444443332222211 111 112234444444 45 Q ss_pred HHHhcCCceEEEeeCCC-C--ceEEEEEeCcceeeccc---cCc---------------eeEEEcC--Cc---------- Q lcl|Aclame:pro 104 DFLVFGNAFLEKRYSTT-G--KVIRLETSPAKYTRRGV---EED---------------VYWWVPS--FN---------- 150 (344) Q Consensus 104 d~ll~Gnay~~~~r~~~-G--~~~~L~pl~~~~~~~~~---~~~---------------~~~~~~~--~~---------- 150 (344) .++..|++|+.+.+... | .++.|..|+|..+.... ++. .||.... .+ T Consensus 144 ~~~~dGE~f~~~~~~~~~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~ 223 (533) T protein:vir:34 144 MHAFNGELFVQATWDTSSSRLFRTQFRMVSPKRISNPNNTGDSRNCRAGVQINDSGAALGYYVSEDGYPGWMPQKWTWIP 223 (533) T ss_pred HHHhCCceEEEeeeccCCCCccceEEEEechhhcCCCCCCCCCCceEeeeEECCCCCeEEEEEeecCCCCccccccceee Confidence 77899999998875433 2 36788888887654311 111 1333321 11 Q ss_pred eEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCC----------CHHH Q lcl|Aclame:pro 151 EPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQ----------DRND 220 (344) Q Consensus 151 ~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~----------~~e~ 220 (344) ....+++.+|||+..+.-.++..|+|.+..++..+.-...-.+....--+=.+.-.++|+...+.. .+++ T Consensus 224 ~~~~v~a~~VlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~ 303 (533) T protein:vir:34 224 RELPGGRASFIHVFEPVEDGQTRGANVFYSVMEQMKMLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFILGANSQEQ 303 (533) T ss_pred eeeccChhHeeeeccccCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeeecCCCcccccccccCCCcccc Confidence 123356789999998876678899999999887766655444444444444555566665432211 1111 Q ss_pred HHHHHHHHHHh---hcc----cccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHh-cccc Q lcl|Aclame:pro 221 IEMLRENMVKS---KGR----NNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLM-GGKP 292 (344) Q Consensus 221 ~~~l~~~~~~~---~g~----~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~ll-G~~~ 292 (344) .+.+....... .+. =..|.+..|. .|.+++.++.......|.+..+.....||+.+|||-+.| |.. T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~-----pGe~i~~~~~~~p~~~~~~f~~~~lr~iAaglGi~ye~lt~D~- 377 (533) T protein:vir:34 304 RERLTGWIGEIAAYYAAAPVRLGGAKVPHLM-----PGDSLNLQTAQDTDNGYSVFEQSLLRYIAAGLGVSYEQLSRNY- 377 (533) T ss_pred cccccccchhhhhccCcceeeccCceeeecC-----CCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhc- Confidence 12222111110 000 1234555553 466677776665567899999999999999999998766 543 Q ss_pred ccccccccHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhCccceeccc-cccccCCC Q lcl|Aclame:pro 293 ENVGSLGDIEKVAKVFVRN-----------ELIPLQDRIREINGWIGQEVIRFKN-YSLDTDNG 344 (344) Q Consensus 293 ~~~~~~~n~e~~~~~f~~~-----------~l~P~~~~ie~ln~~L~~~~irf~~-y~l~~d~g 344 (344) .+.+||++......|.+. -++|+-..+. ...+....+.... ..++|... T Consensus 378 -s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl--~~ail~G~i~~p~~~~~~~~~~ 438 (533) T protein:vir:34 378 -AQMSYSTARASANESWAYFMGRRKFVASRQASQMFLCWL--EEAIVRRVVTLPSKARFSFQEA 438 (533) T ss_pred -ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcCcccCCCccCCCchhh Confidence 346788876655555443 2233333221 1111111222211 11122222 No 130 >protein:vir:6382 Length: 553 # NCBI annotation: portal protein Lambda B # Family: family:all:47 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918995;genbank:gi:34610170;genbank:GeneID:2559575 Probab=98.41 E-value=9e-08 Score=59.20 Aligned_cols=321 Identities=9% Similarity=0.020 Sum_probs=145.1 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEc----------CCceecc--CcchhhhhhhhhccchhhhccccHHHH-HHHHh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTF----------GEPVPVL--DRRDILDYVECISNGRWYEPPVSFTGL-AKSLR 67 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~----------~~p~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~l-~~~~~ 67 (344) |-+...|.....+..............+ .++.|.. ...++...... +... ..+.+ T Consensus 1 m~~~~~r~~~~~a~~~~~~~~~~~~~~y~gA~~~~r~~~~w~~~~~s~~~~~~~~~~~------------lr~RaRdL~r 68 (553) T protein:vir:63 1 MTKVTVRKLSEVTSGRPEQSASLGGGGLEGASRLSRETVSWNPSLRSPDALINPLKRI------------ADARGRDMAD 68 (553) T ss_pred CcchhhhhhcccccccchhhhhhhcccccccccCCCcccccccCCCChHHHHHHHHHH------------HHHHHHHHHh Confidence 6555444322111110000000000111 1111111 01111111000 0111 12333 Q ss_pred hhhhhhhhhhhcchhhHHh-hh---------------------------------c--------CCCCCHHHHHHHH-HH Q lcl|Aclame:pro 68 AAVHHSSPIYVKRNILAST-FI---------------------------------P--------HPWLSQQDFSRFV-LD 104 (344) Q Consensus 68 ~~~~~~~~i~~k~n~~~~~-~~---------------------------------p--------np~~~~~~~~~~~-~d 104 (344) .+++..+++....+.+... ++ . ...++++.++.++ .. T Consensus 69 Nn~~a~~av~~~~~nvVG~Gi~~~~~~~~~~l~g~~~~~~~~~~~~ie~~w~~wa~~~~~~~D~~g~~~f~~~q~l~~r~ 148 (553) T protein:vir:63 69 NDGFTNGAVGYQRDSIVGAQYRLNSMPDINVIPGATEEWAEEYQTIVEAKFELYAESLACYIDNAAISTFTGLIRLGVVG 148 (553) T ss_pred cChHHHHHHHHHHHhhccCCceeeeccchhhhcCCCHHHHHHHHHHHHHHHHHhcCCccceeeccccCCHHHHHHHHHHH Confidence 4444444443322222111 11 1 1223444455544 47 Q ss_pred HHhcCCceEEEeeCCC-C--ceEEEEEeCcceeeccc---cCc---------------eeEEEcC--C--------c--- Q lcl|Aclame:pro 105 FLVFGNAFLEKRYSTT-G--KVIRLETSPAKYTRRGV---EED---------------VYWWVPS--F--------N--- 150 (344) Q Consensus 105 ~ll~Gnay~~~~r~~~-G--~~~~L~pl~~~~~~~~~---~~~---------------~~~~~~~--~--------~--- 150 (344) ++..|++|+.+.+... | .+..|..|+|.++.... ++. .||.... + + T Consensus 149 ~~~dGE~~~~~~~~~~~~~~~~~~lq~ie~drl~~~~~~~~~~~i~~GVE~d~~Gr~vaY~i~~~hPgd~~~~~~~~~~~ 228 (553) T protein:vir:63 149 YVKTGEVLATAEWDRAANRPYATCFQMVSTDRLSNPYQQLDTPTLRRGVQYDKRGRPQGYWIQVAHPGDLYQMAPDMYKW 228 (553) T ss_pred HHhCCceEEEeeeccCCCCcccceEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEeeccCCCccccccccccce Confidence 8899999998765432 2 35678888887664321 111 1332211 0 0 Q ss_pred ----eEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHH Q lcl|Aclame:pro 151 ----EPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRE 226 (344) Q Consensus 151 ----~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~ 226 (344) ....+++.+|||+..+.-.++..|+|.+..++..+.-...-++....--+=.+.-.++|+.+. .++...+.+.. T Consensus 229 ~r~~~~~~v~a~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~daeL~~a~i~A~~a~fi~~~~--~~~~~~~~~~~ 306 (553) T protein:vir:63 229 KFVQQSKPWGRRQVIHILEPREPDQSRGIADIVSGLKDMRMAKRFKEMSLQNAVINASYAAAIESEL--PPEFIHSQMSG 306 (553) T ss_pred eeeccccccChhHheecccccCCCcccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCC--Chhhhhhhccc Confidence 123467889999998866678899999998877665544444433333333444555555322 22222222221 Q ss_pred HHHH----------------h-hc----ccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCCh Q lcl|Aclame:pro 227 NMVK----------------S-KG----RNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPF 285 (344) Q Consensus 227 ~~~~----------------~-~g----~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp 285 (344) .-.. . .| .-..|.+..|. .|.+++.+...-...+|.+..+.....||+.+|||- T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~-----pGe~i~~~~p~~p~~~~~~F~~~~lr~iaaglGi~Y 381 (553) T protein:vir:63 307 GSPNADMVGIFGKYMDALKAYVGGANNIQIDGAKIPHLF-----PGTKLNLKPMGTPGGVGSEFEASLNRHLASAFGMSY 381 (553) T ss_pred ccccccccccccccccccccccccccceeecCceeeecC-----CCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCH Confidence 1100 0 00 01234555553 355666666654567899999999999999999998 Q ss_pred HHh-ccccccccccccHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhCccceeccccc----ccc-------- Q lcl|Aclame:pro 286 QLM-GGKPENVGSLGDIEKVAKVFVRNE-----------LIPLQDRIREINGWIGQEVIRFKNYS----LDT-------- 341 (344) Q Consensus 286 ~ll-G~~~~~~~~~~n~e~~~~~f~~~~-----------l~P~~~~ie~ln~~L~~~~irf~~y~----l~~-------- 341 (344) +.| |.. .+.+||++......|.+.. ++|+...+.+ ..+....|..-++. +.. T Consensus 382 e~lt~D~--s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~--~a~l~G~i~~p~~~~~~~~~~p~~~~a~~ 457 (553) T protein:vir:63 382 EEFTRDF--SKANYSSIQAGIAMTRRFLEGRKKMCADRLATEFFTLWLE--EAIAAGEVPMPPGQTRDLFYQPLMKEALS 457 (553) T ss_pred HHHhhhc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCCccCCCcccchhhcchhhhhhhh Confidence 755 543 3467888776665554432 2333222211 11111112211111 000 Q ss_pred ------------CCC Q lcl|Aclame:pro 342 ------------DNG 344 (344) Q Consensus 342 ------------d~g 344 (344) |.. T Consensus 458 ~~~w~~p~~~~iDP~ 472 (553) T protein:vir:63 458 KCEWIGASQGQIDQL 472 (553) T ss_pred ceeeecCCccccChH Confidence 111 No 131 >protein:vir:96068 Length: 765 # NCBI annotation: conserved hypothetical protein ORF017 # Family: family:all:297 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294434;genbank:gi:149408331;genbank:GeneID:5237187 Probab=98.36 E-value=2.6e-07 Score=56.71 Aligned_cols=324 Identities=10% Similarity=0.058 Sum_probs=145.1 Q ss_pred CC--CCCCCCCCcchhhcccc-------------cc-ceeEEEcCCcee--ccCcch---hhhhhhh---------hc-- Q lcl|Aclame:pro 1 MS--KKKGKTPQPAAKTMTAS-------------AP-KMEAFTFGEPVP--VLDRRD---ILDYVEC---------IS-- 48 (344) Q Consensus 1 m~--~~~~~~~~~~~~~~~~~-------------~~-~~~~f~~~~p~~--~~~~~~---~~~~~~~---------~~-- 48 (344) -| -|+++.+++.+...... ++ .-.+.-|.-|.. .++... ..+.+.. .. T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ds~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (765) T protein:vir:96 19 ESAPEKVARIPQHDPLDPMIKLGKIRGWNVEPEKAPVIRSVKDFLEPGLSVAMDSAYGDGPTPAAKAAAGGQNPYVVPTM 98 (765) T ss_pred ccCchhhhhcCCCCCcccchhHHHHhhcccccccCCCCCCCCcccCcccceeccccccccccchHHHhhhccCccchhhH Confidence 00 01111111111000000 00 001112221211 011100 0000000 00 Q ss_pred cchhhhcc-ccHHHHHHHHhhhhhhhhhhhhcchhhHHhhh---c--CCCC---------------CHHHHHHHHHHHHh Q lcl|Aclame:pro 49 NGRWYEPP-VSFTGLAKSLRAAVHHSSPIYVKRNILASTFI---P--HPWL---------------SQQDFSRFVLDFLV 107 (344) Q Consensus 49 ~~~~~~~p-~~~~~l~~~~~~~~~~~~~i~~k~n~~~~~~~---p--np~~---------------~~~~~~~~~~d~ll 107 (344) -..||.+. +.-+.|..+++.+.....++..-..+...... . +-.. -+..+...+...-+ T Consensus 99 ~~~~~~~~~f~gyql~alY~~~~l~rkiVd~pAeDa~R~g~~I~~~~~e~~~~~~~~l~~~~~rl~v~~~l~ea~~~~Rl 178 (765) T protein:vir:96 99 LQDWYNSQGFIGYQACAIISQHWLVDKACSMSGEDAARNGWELKSDGRKLSDEQSALIARRDMEFRVKDNLVELNRFKNV 178 (765) T ss_pred HHhhhcccCCccHHHHHHHHhCchhhhhhhcchHHhhcCCceeecCccccCHHHHHHHHHHHHHhhHHHHHHHHHHHhhh Confidence 01233222 12255677888888777666555444332111 0 0000 01111222233458 Q ss_pred cCCceEEEeeC---C-------------CCceEEEEEeCcceeeccc--------cCce-----eEEEcCCceEEEEecc Q lcl|Aclame:pro 108 FGNAFLEKRYS---T-------------TGKVIRLETSPAKYTRRGV--------EEDV-----YWWVPSFNEPTAFAPG 158 (344) Q Consensus 108 ~Gnay~~~~r~---~-------------~G~~~~L~pl~~~~~~~~~--------~~~~-----~~~~~~~~~~~~~~~~ 158 (344) +|.+|+.+.-+ . .|....|..+.+..+.... .... +|.+. + ..+.++ T Consensus 179 yGga~i~i~i~~~D~~~l~~PL~~~~I~kg~~kgl~vldp~~~~~~~v~e~~~Dp~sp~fg~P~~y~i~--g--~~IH~S 254 (765) T protein:vir:96 179 FGVRIALFVVESDDPDYYEKPFNPDGIAPGSYKGISQIDPYWAMPQLTAESTADPSAEHFYEPDFWIIS--G--KKYHRS 254 (765) T ss_pred ceeeEEEEEecccCcchhhccccccccccceeeEEEEechhhcccccchhccccccccccCcceeeeec--C--ceeccc Confidence 99999876432 1 1233456666665443311 1112 23333 2 246678 Q ss_pred cEEEecCCCC------CCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCC-CCCHHHHHHHHHHHHHh Q lcl|Aclame:pro 159 SVFHLLEPDI------NQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDA-VQDRNDIEMLRENMVKS 231 (344) Q Consensus 159 eIih~~~~~~------~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~-~~~~e~~~~l~~~~~~~ 231 (344) .|||+..... ...++|.|-++.+...|.....+......++...... ++++... .+. ..+.++++++.. T Consensus 255 Rli~~~g~~lpd~lk~~~~~~G~Svlq~~yd~I~~~~~t~~~~a~Ll~k~~~~--v~k~~~~~~l~--~~~~l~~r~~~~ 330 (765) T protein:vir:96 255 HLVVVRGPQPPDILKPTYIFGGIPLTQRIYERVYAAERTANEAPLLAMSKRTS--TIHVDVEKAIA--NEDAFNARLAFW 330 (765) T ss_pred eEEEecCCCchhhhccccCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccc--eeeechHhhhc--cHHHHHHHHHHH Confidence 8999865532 2356799999999999988888887777777765443 3444321 111 123455555443 Q ss_pred hcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChH-HhccccccccccccHHHHHHHHHH Q lcl|Aclame:pro 232 KGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQ-LMGGKPENVGSLGDIEKVAKVFVR 310 (344) Q Consensus 232 ~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~-llG~~~~~~~~~~n~e~~~~~f~~ 310 (344) ....+..++++++. ++ +|+.++.+..+ +-++.....++||++.+||.. |+|..+.+ ..++.+...+.||. T Consensus 331 ~~~r~n~g~~~id~---ee--~~e~~s~~lsg--l~d~l~~~~~~iAaas~IP~t~LfGqsp~G--lnATGe~D~~nYyD 401 (765) T protein:vir:96 331 IANRDNHGVKVIGI---DE--TMEQFDTNLSD--FDSVIMNQYQLVAAIAKTPATKLLGTSPKG--FNATGEHETISYHE 401 (765) T ss_pred HHhcCCceeEEecC---Cc--ceeEEecccCC--HHHHHHHHHHHHHhhhCCCeeeeccCCccc--ccCcchHHHHHHHH Confidence 22222234566643 23 34444443332 334455667899999999986 45654332 22344555666666 Q ss_pred -------HHHHHHHHHHHHHHHhhCccceeccccccccCCC Q lcl|Aclame:pro 311 -------NELIPLQDRIREINGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 311 -------~~l~P~~~~ie~ln~~L~~~~irf~~y~l~~d~g 344 (344) ..|.|.++++-++.-+-+ .+. .+++++|.+= T Consensus 402 ~I~s~Qe~~l~p~le~L~~li~~s~--~i~-~d~~i~FnpL 439 (765) T protein:vir:96 402 ELESIQEHIFDPLLERHYLLLAKSE--SID-VQLEIVWNPV 439 (765) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCC-CcceEEeCCC Confidence 455666655544221111 111 2344444433 No 132 >protein:vir:78161 Length: 355 # NCBI annotation: hypothetical protein # Family: family:all:2372 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294798;genbank:gi:149882819;genbank:GeneID:5309189 Probab=98.14 E-value=3.2e-06 Score=50.67 Aligned_cols=224 Identities=9% Similarity=-0.016 Sum_probs=120.2 Q ss_pred eEEEeeCCCC---ceEEEEEeCcceee---ccccCce--eEEEc-CCceEEEEecccEEEecCCCCCCCcccccchhhhH Q lcl|Aclame:pro 112 FLEKRYSTTG---KVIRLETSPAKYTR---RGVEEDV--YWWVP-SFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSAL 182 (344) Q Consensus 112 y~~~~r~~~G---~~~~L~pl~~~~~~---~~~~~~~--~~~~~-~~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~ 182 (344) +.|++....+ .|..|.+.++.++. ...++.. ..+.. .+.....+++...|+.++....+..||.+.+..+. T Consensus 1 v~Eivw~~~~g~~~~~~l~~r~~~~~~~f~~~~~~~l~~~~~~~~~g~~~~~lp~~kfi~~~~~~~~g~p~G~gLlr~~~ 80 (355) T protein:vir:78 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) T ss_pred CeEEEEEeeCCeEEEeeeeecCccceeeeeeccCCceeEEEecCCCCCCcceeccCCEEEEEeCCCCCCccchhhHHHHH Confidence 7777765433 47778888887443 3333332 22222 23344667777666554444455689999999999 Q ss_pred HHHHHHHHHHHHHHHHHHccCCCceEEEec-CCCC-----------CHHHHHHHHHHHHHhhcccccccccccCCCCccc Q lcl|Aclame:pro 183 NSAWLNESATLFRRKYYENGAHAGYIMYVT-DAVQ-----------DRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKAD 250 (344) Q Consensus 183 ~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~-~~~~-----------~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~ 250 (344) -.........++...|.+.-+.|--+.+.+ +... ++++++.+....++...+.+++ +|+ +. T Consensus 81 w~~~fK~~~~~~w~~f~Er~g~g~p~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~i~~g~~a~--~ii-----p~ 153 (355) T protein:vir:78 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAG--GYI-----PH 153 (355) T ss_pred HHHHHHHhhHHHHHHHHHHcCCCceEEEecCCCCcccchhhhHHHHHHHHHHHHHHHHHHhhCCccee--Eee-----cC Confidence 999999999999999998753332233332 2111 1223333444444433333332 222 34 Q ss_pred cceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCc Q lcl|Aclame:pro 251 GIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQ 329 (344) Q Consensus 251 g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~~ 329 (344) |++++-++......+|.+.-++-.++|+++.--. .+--...+++++++- .+....-..+.+.-.+..|++ ||+.|.. T Consensus 154 g~~ie~~ea~g~~~~~~~~i~~~d~~Isk~iLGq-tlTs~~~~~gGS~Al-g~vh~~v~~~~~~aD~~~i~~~ln~~li~ 231 (355) T protein:vir:78 154 GANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAH-FLTLGGDKSTGSYAL-GDTFASFFTGSLNAVMKHIADVTQQHVVE 231 (355) T ss_pred CceEEEeecCCCcccHHHHHHHHHHHHHHHHhhh-hhccccCCccchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 5666666555555667788888888998876433 121101111222222 223333344455556666654 6665544 Q ss_pred cceecc-----c-cccccCCC Q lcl|Aclame:pro 330 EVIRFK-----N-YSLDTDNG 344 (344) Q Consensus 330 ~~irf~-----~-y~l~~d~g 344 (344) .++.++ + ..|.|+.= T Consensus 232 ~l~~lN~~~~~~~P~~~~~~~ 252 (355) T protein:vir:78 232 DLVDQNWGPEEPAPRLVPAQL 252 (355) T ss_pred HHHHhcCCCCCCCCEEEecCc Confidence 333322 1 13344322 No 133 >protein:vir:10321 Length: 495 # NCBI annotation: ORF23 # Family: family:all:47 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758916;genbank:gi:27311190;genbank:GeneID:956137 Probab=98.00 E-value=3.2e-06 Score=50.69 Aligned_cols=319 Identities=11% Similarity=0.041 Sum_probs=137.9 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCce------ec-cCcchhhhhhhhhccchhhhccccHHHH-HHHHhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPV------PV-LDRRDILDYVECISNGRWYEPPVSFTGL-AKSLRAAVHH 72 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~------~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~l-~~~~~~~~~~ 72 (344) |+--.+-...+++....... ...|.-..+- +. ....++..+ ... +..- ..+.+.+++. T Consensus 1 m~~~~~~~~a~~~~~~~~~~--~~~y~aa~~~~~~~~~~~~s~d~~~~~~-----------~~~-lr~RaRdl~rNn~~a 66 (495) T protein:vir:10 1 MNMTPSGYQSLASGLLVPVG--ASAYEGASGGHRWQDIGDYGPDTAVASG-----------IQT-LRARSHHNVRNNPWA 66 (495) T ss_pred CCcccccccccchhhhhHHH--hhhhhccccCcccCCCCCCChhHHHHHH-----------HHH-HHHHHHHHHhcChHH Confidence 43333222222211111100 0111111110 00 000011000 000 1111 2244455555 Q ss_pred hhhhhhcchhhHH-hhhcCC--------------------------CCCHHHHHH-HHHHHHhcCCceEEEeeC--CCC- Q lcl|Aclame:pro 73 SSPIYVKRNILAS-TFIPHP--------------------------WLSQQDFSR-FVLDFLVFGNAFLEKRYS--TTG- 121 (344) Q Consensus 73 ~~~i~~k~n~~~~-~~~pnp--------------------------~~~~~~~~~-~~~d~ll~Gnay~~~~r~--~~G- 121 (344) .+++....+.+.. .++|++ .+++..++. ++..++..|++|+.+... ..| T Consensus 67 ~~av~~~~~~vVG~Gi~p~~~~~~~~~~~~ie~~w~~wa~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~~g~ 146 (495) T protein:vir:10 67 TNAVATWVAAAVGNGLTPRWRMKEQELRQELQELWGDWVNEADFDEVQSFYGLQALVVRTVINSGEAFVIKKPRPLSEGL 146 (495) T ss_pred HHHHHHHHHhhcCCCcccccCCchHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHHhCCceEEEEeecccCCCC Confidence 5555544333321 122222 234444554 445788999999977643 333 Q ss_pred -ceEEEEEeCcceeeccc------cCc---------------eeEEEc---C-------CceEEEEecccEEEecCCCCC Q lcl|Aclame:pro 122 -KVIRLETSPAKYTRRGV------EED---------------VYWWVP---S-------FNEPTAFAPGSVFHLLEPDIN 169 (344) Q Consensus 122 -~~~~L~pl~~~~~~~~~------~~~---------------~~~~~~---~-------~~~~~~~~~~eIih~~~~~~~ 169 (344) .++.|..|+|.++.... +++ .|+... + ......+++++|||+....+ T Consensus 147 ~~~~~lqliepd~l~~~~~~~~~~~g~~i~~GIe~d~~Gr~vaY~i~~~hpgd~~~~~~~~~~~rvpA~~vlH~f~~r~- 225 (495) T protein:vir:10 147 SVPLQLQIIEPDMLASDIPDETLPSGGYVKGGIRFSNGGKRKAYCFYRNHPAESSLIGDPVDTVWIKAEHVLHVTVLTV- 225 (495) T ss_pred ccceEEEEechhhcCCCCCCCCCCCCCEEEeceEECCCCceEEEEEeecCCCcccccccccceeeechhheEeccccCC- Confidence 46788888887764210 110 133222 1 11346689999999975544 Q ss_pred CCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhc----ccccccccccCC Q lcl|Aclame:pro 170 QELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKG----RNNFKNLFLYAP 245 (344) Q Consensus 170 ~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g----~~n~~~~~vl~~ 245 (344) .+..|+|.+. .+..+.-...-.+....--+=.+...++|+..++ ++..-+.+-..-....+ .=..|.+..|. T Consensus 226 gQ~RGis~la-~i~~l~~l~~y~dael~~a~i~A~~~~fi~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~- 301 (495) T protein:vir:10 226 RSDAGAPWFQ-LLLRLNELDQYEDAELVRKKTAALFAAFIQEATA--DSTGGPTIGQPKRSKGGKRITGLNPGTLQYLQ- 301 (495) T ss_pred CcccCcchhH-HHHHHHHhhHHHHHHHHHHHHhhhheeeeecCCC--ccccccccCccccccCcccceecCCceeeecC- Confidence 5778998554 3333322222222222222334445555553322 11111110000000000 01234555554 Q ss_pred CCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHh-ccccccccccccHHHHHHHHHHHHH-------HH-H Q lcl|Aclame:pro 246 QGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLM-GGKPENVGSLGDIEKVAKVFVRNEL-------IP-L 316 (344) Q Consensus 246 ~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~ll-G~~~~~~~~~~n~e~~~~~f~~~~l-------~P-~ 316 (344) .|.+++.++....-..|.+..+.....||+.+|||-+.+ |.. .+.+||++.+....|.+..- .| + T Consensus 302 ----pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~Ye~ltgD~--s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~ 375 (495) T protein:vir:10 302 ----PGQEVKFSNPADVGTTYEPWLRYQLLSIAKGYGITYEMLTGDL--RGVNYSSIRAGLLEFRRLCQQVQHHMIIHQF 375 (495) T ss_pred ----CCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhccc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 456677766654557788999999999999999998866 543 34578887776655543321 11 1 Q ss_pred HHHH-HH-HHHhhCccceeccccc--------cc--------cCCC Q lcl|Aclame:pro 317 QDRI-RE-INGWIGQEVIRFKNYS--------LD--------TDNG 344 (344) Q Consensus 317 ~~~i-e~-ln~~L~~~~irf~~y~--------l~--------~d~g 344 (344) |+.| +. |...+....|...+|. .+ .|.. T Consensus 376 ~~pi~~~~l~~a~l~G~i~~p~~~~~~~~~~~~~w~~p~~~~vDP~ 421 (495) T protein:vir:10 376 CRPVGRWFMDFAVASGAVVIPDYLQRRRYYNRVSWRTPRWEEVDPL 421 (495) T ss_pred HHHHHHHHHHHHHHcCCCCCCCchhhhHhhhccccccCCccccChH Confidence 2211 11 1111111112221110 00 0111 No 134 >protein:vir:95254 Length: 488 # NCBI annotation: Phage conserved protein # Family: family:all:2372 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944885;genbank:gi:158267601;genbank:GeneID:2744039 Probab=97.72 E-value=2.5e-05 Score=45.84 Aligned_cols=313 Identities=13% Similarity=0.088 Sum_probs=144.8 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccH------HHHHHHHhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSF------TGLAKSLRAAVHHSS 74 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~l~~~~~~~~~~~~ 74 (344) |.-.- ...+.. .|.. -+.++.-..--..+.+++.|... ..|-+.....+|..+ T Consensus 1 ~~~~~---------~~~~gl---------~p~r---l~~i~~~~~~~~~~~~~~~~~~~Lr~~~~~~ly~~m~~D~hi~s 59 (488) T protein:vir:95 1 MADIT---------ETQESL---------PPFR---MGEVGSLGLKVKNGRIYEEPRQALRFPESIKTFQLMMRDPAVAA 59 (488) T ss_pred CCCcc---------ccCCCC---------CHHH---HHHHHHHhhccccchhhccchhhhcccchHHHHHHHhhChHHHH Confidence 22111 111110 1110 01222211111244555555432 223344445788888 Q ss_pred hhhhcchhhHHh---hhcCCCCCH------------------H-HHHHHHH---HHHhcCCceEEEeeCC---------- Q lcl|Aclame:pro 75 PIYVKRNILAST---FIPHPWLSQ------------------Q-DFSRFVL---DFLVFGNAFLEKRYST---------- 119 (344) Q Consensus 75 ~i~~k~n~~~~~---~~pnp~~~~------------------~-~~~~~~~---d~ll~Gnay~~~~r~~---------- 119 (344) |+..++..+... +.|+...+. . .|+.++. |.+.+|-+.+|++... T Consensus 60 ~l~~Rk~av~~~~w~v~p~~~~~~d~~~~~~a~~v~~~l~~~~~~~~~~i~~~lda~~~G~s~~Eivw~~~~~~~~~~~~ 139 (488) T protein:vir:95 60 SVNIIKMFVRKVNWRFVPPKGKEQDPKMLERADFFNSLMDDMEHDWADFINSVMSFCTYGFCVNEKVYKKRQGKKGKYQS 139 (488) T ss_pred HHHHHHHHHhcCCceEecCCCCchhHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccceeeeeeeeccccccccccc Confidence 887766655542 333221110 0 1333333 4568899999998743 Q ss_pred ---CC--ceEEEEEeCcce---eeccccCceeEEEcC----------------CceEEEEeccc-EEEecCCCCCCCccc Q lcl|Aclame:pro 120 ---TG--KVIRLETSPAKY---TRRGVEEDVYWWVPS----------------FNEPTAFAPGS-VFHLLEPDINQELYG 174 (344) Q Consensus 120 ---~G--~~~~L~pl~~~~---~~~~~~~~~~~~~~~----------------~~~~~~~~~~e-Iih~~~~~~~~~~~G 174 (344) +| .+..|.+.++.. .....+++....... ....+.+++.. |+|.... ..+..|| T Consensus 140 ~~~dg~~~~~~i~~Rpq~~~~~f~~d~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~kfi~~~~~~-~~g~p~g 218 (488) T protein:vir:95 140 KFDDGLIGWAKLPIRNQSTLDKWYFDEDFRRVTGVRQNLRNVSHIAGAINLGERPLTRKLPRAKFMLFKYDD-EYGNPEG 218 (488) T ss_pred cccCCeeeeeeeeecCcccccceeeccCCCceeecccccccccccccccccccccccccccccceEEEeecC-CCCccch Confidence 22 255666666642 222233222111110 11223455555 4455443 3556789 Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEec-C--CCCCHHHHHHHHHHHHHh----hcccccccccccCC-- Q lcl|Aclame:pro 175 LPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVT-D--AVQDRNDIEMLRENMVKS----KGRNNFKNLFLYAP-- 245 (344) Q Consensus 175 ~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~-~--~~~~~e~~~~l~~~~~~~----~g~~n~~~~~vl~~-- 245 (344) .+.+..+.-.........++...|...-+.|--+...+ + ...++++.+.+.+.+.+. .+...++ +++.. T Consensus 219 ~gLlr~~~w~~~fK~~~~~~w~~f~Er~g~g~p~~~~p~~~~~~~~~~e~~~l~~a~~~i~~~~~~~~~ag--~iiP~g~ 296 (488) T protein:vir:95 219 RSPLLNAYVPWKYKVQIEEYEAVGVSRDLVGMPKIGLPPDYLDENAEPEKKAFVQYCKTVVNDMIANDRAG--LIWPRYI 296 (488) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEeeccCCCCCcccHHHHHHHHHHHHHHHHhhccchhh--eeecccc Confidence 99999999999888889899888888643333333332 1 122344444444444332 2211122 22211 Q ss_pred --CCccccceeeeccCCh-hHHHHHHHHHhhHHHHHHHhcCChHHhcccc----ccccccccHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 246 --QGKADGIKIIPLSEVA-TKDDFFNIKKASAADLLDAHRIPFQLMGGKP----ENVGSLGDIEKVAKVFVRNELIPLQD 318 (344) Q Consensus 246 --~~~~~g~~~~pl~~~~-~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~----~~~~~~~n~e~~~~~f~~~~l~P~~~ 318 (344) ++++..++++-++... .-..|.+.-++--++|+++. +|..- +++++++- .+.........+.-.++ T Consensus 297 ~~~~k~~~~e~~l~~~~~~~~~~~~~li~~~d~~Isk~i------LGqtLT~~~~~~Gs~Al-~~vh~ev~~~i~~aDa~ 369 (488) T protein:vir:95 297 DPDTKEDIFEFSLVSRQGAKAYDTGSIIDRYSKQIMMAF------MSDVLAMGQSKYGSFSL-ADSKTSLLAMSVDILLK 369 (488) T ss_pred ccccchhhhhhhccccccCCchhHHHHHHHHHHHHHHHH------hccccccccCcchhhhH-HHHHHHHHHHHHHHHHH Confidence 1111222333333322 22336666666677777754 44321 12233332 22333334455666667 Q ss_pred HHHH-HHHhhCccceecc-----c-cccccCCC Q lcl|Aclame:pro 319 RIRE-INGWIGQEVIRFK-----N-YSLDTDNG 344 (344) Q Consensus 319 ~ie~-ln~~L~~~~irf~-----~-y~l~~d~g 344 (344) .|++ ||+.|...+++++ + ..|.|+.= T Consensus 370 ~i~~tln~~li~~l~~~Nfg~~~~~P~~~~~~~ 402 (488) T protein:vir:95 370 QIKNVINRDLVAQTYALNMWDDEEHVQITYDDI 402 (488) T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccEEEecCc Confidence 7765 7776655444432 1 23444432 No 135 >protein:vir:9568 Length: 410 # NCBI annotation: gp34 # Family: family:all:524 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862873;genbank:gi:32469465;genbank:GeneID:1461310 Probab=97.66 E-value=3.1e-05 Score=45.28 Aligned_cols=285 Identities=12% Similarity=0.091 Sum_probs=114.0 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhh--ccccH-HHHHHHHhh-hhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYE--PPVSF-TGLAKSLRA-AVHHSSPI 76 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~p~~~-~~l~~~~~~-~~~~~~~i 76 (344) |+..+.|- ....+| +.|+.-- .++.+ ..+..+++. .....-++ T Consensus 1 l~~~~~r~-----------------------------~~~~~y----Y~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~~V 47 (410) T protein:vir:95 1 MNLYQSRV-----------------------------NLRYKH----YAMQHYEAPTGITIPAHIRAKYQAVLGWAAKGV 47 (410) T ss_pred CCcchhhH-----------------------------HHHHHH----hcCCCCccccchhccHHHHhHHHhhcchhHHHH Confidence 22111110 001111 2221100 00100 111111111 01111111 Q ss_pred hhcchh------------hHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCce-- Q lcl|Aclame:pro 77 YVKRNI------------LASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV-- 142 (344) Q Consensus 77 ~~k~n~------------~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~-- 142 (344) ...... +-..+.-|.+ ......+..+.+.+|.+|+.+..+..|.| .+.+++|..+....++.. T Consensus 48 ds~a~rl~~~Gf~~~d~~l~~i~~~N~l--d~~~~~~~~~al~~G~sf~~v~~~~d~~~-~i~~~sP~~~~~i~Dp~~~~ 124 (410) T protein:vir:95 48 DSLADRLIFRAFANDDFNVTEIFDRNNP--DIFFDSAILSALIGSCSFVYISKGEDDEV-RLQVIESSNATGVIDPITGL 124 (410) T ss_pred HHhHhhhccccccCCCchHHHHHhhcCh--HHHHHHHHHHHHHhCceeEEEecCCCCce-EEEEEcccceEEEEeCCCCc Confidence 110000 0011111111 12234556788999999999998888875 577787776654333220 Q ss_pred ------eEEEcCCce---EEEEecc---------------------cEEEecCCCCCCCcccccch----hhhHHHHHHH Q lcl|Aclame:pro 143 ------YWWVPSFNE---PTAFAPG---------------------SVFHLLEPDINQELYGLPEY----LSALNSAWLN 188 (344) Q Consensus 143 ------~~~~~~~~~---~~~~~~~---------------------eIih~~~~~~~~~~~G~sp~----~~~~~~i~~~ 188 (344) ++....++. ...+.++ .|++|.+..-.++.+|.|.+ ..+.+++.-. T Consensus 125 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~~~l~~~~G~s~I~~~v~~l~da~~r~ 204 (410) T protein:vir:95 125 LVEGYAVLARDDYNRPTLEAYFEPNATHFIPKDGEPYSVTNETGIPLLVPVIHRPDAVRPFGRSRITRAGMYYQKYAKRT 204 (410) T ss_pred eEEEEEEEEecCCCeEEEEEEEeCCcEEEEeeCCccccccCCCCCcceEEecccccCCccCCccccchhHHHHHHHHHHH Confidence 011111111 0112222 34555432112345777754 3334433333 Q ss_pred HHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHH Q lcl|Aclame:pro 189 ESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFN 268 (344) Q Consensus 189 ~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e 268 (344) ..-..-...||. .|--++ .+...+.+..+ .|+.. .++++.+..+.+..+.++..+....-+ .|++ T Consensus 205 ~~~~~~~~e~~a---~pqr~i--~G~d~d~~~~~----~~~~~-----~~~i~~~~~~~~~~~~~v~q~~~~~l~-~~~~ 269 (410) T protein:vir:95 205 LERADITAEFYS---WPQKYI--LGLDPDAEPME----KWKAT-----VSSLLTISSSDKGVKPSVGQFTTASMS-PFTE 269 (410) T ss_pred HHHHHHHHHHhc---chhhee--eccCCCCCcCc----hhhhh-----hhhheeccCCCCCCcceEEecCCCChH-HHHH Confidence 333333445553 343333 23222222222 23222 123444433322345677666544432 4999 Q ss_pred HHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc----------------e Q lcl|Aclame:pro 269 IKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIREINGWIGQEV----------------I 332 (344) Q Consensus 269 ~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~ln~~L~~~~----------------i 332 (344) ..+.....|+++=++|++.+|....+.++..-+..+ ..|++.+.+.-++.++.-. . T Consensus 270 ~l~~l~~~~a~~s~lP~~~lg~~~~NpsSa~Al~a~--------~~~L~~ka~~k~~~fg~~l~~~~rla~~i~~~~~~~ 341 (410) T protein:vir:95 270 QLRTAAAGFAGEMGLTLDDLGFVSDNPSSVEAIKAS--------HENLRLAGRKAQRSLGAGLLNVAYVAACLRDEFRYT 341 (410) T ss_pred HHHHHHHHHhhhcCCCHHHhccccCchhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc Confidence 999999999999999999999765433322122222 2222222222222211111 1 Q ss_pred eccccccc--cC---CC Q lcl|Aclame:pro 333 RFKNYSLD--TD---NG 344 (344) Q Consensus 333 rf~~y~l~--~d---~g 344 (344) +...+.++ +- +- T Consensus 342 ~~~~~~~~v~W~p~~d~ 358 (410) T protein:vir:95 342 RSQFVRTAVKWEPLFEA 358 (410) T ss_pred ccccceeeEEeeecCCc Confidence 11111111 11 11 No 136 >protein:vir:1634 Length: 409 # NCBI annotation: Structural protein # Family: family:all:524 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695055;genbank:gi:23455746;genbank:GeneID:955506 Probab=97.45 E-value=6.5e-05 Score=43.53 Aligned_cols=282 Identities=12% Similarity=0.106 Sum_probs=117.1 Q ss_pred cCcchhhhhhhh--------hccchhhh--ccc-----cH-HHHHHHHhhhh-hhhhhhhhcchhhHHhhhcCCCCC--- Q lcl|Aclame:pro 35 LDRRDILDYVEC--------ISNGRWYE--PPV-----SF-TGLAKSLRAAV-HHSSPIYVKRNILASTFIPHPWLS--- 94 (344) Q Consensus 35 ~~~~~~~~~~~~--------~~~~~~~~--~p~-----~~-~~l~~~~~~~~-~~~~~i~~k~n~~~~~~~pnp~~~--- 94 (344) |+...+..-... ....+||+ .++ .+ ..+...++... ...-++ +.++.....+.+.. T Consensus 1 ~~~~~i~~L~~~~~~~~~r~~~~~~yY~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~iV----ds~a~rl~~~Gf~~~d~ 76 (409) T protein:vir:16 1 MTEKGIGYLRFKLSVHKRRAEMRYEQYAMKHVDRFKGITIPQALSQQYRSILGWCAKGV----DSLADRLVFREFENDDF 76 (409) T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHhccCchhhcchhhhHHHHHHHhhhcChhHHHH----HHhHhhcccccccCcch Confidence 544333111111 11223333 111 11 12222222111 111111 11111111111111 Q ss_pred -----------HHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCce--------eEEEcCCceE--- Q lcl|Aclame:pro 95 -----------QQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV--------YWWVPSFNEP--- 152 (344) Q Consensus 95 -----------~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~--------~~~~~~~~~~--- 152 (344) ......+..+.+.+|.+|+.+..+..|+| .+.+++|..+....++.. ++.....+.. T Consensus 77 ~l~~i~~~N~ld~~~~~~~~~al~yG~sf~~v~~~~dg~~-~i~~~sP~~~~~i~D~~~~~~~~a~~~~~~d~~~~~~~~ 155 (409) T protein:vir:16 77 TVNEIFEENNPDIFFDSTVLSALIASCSFTYISKGENDAV-RLQVIEATNATGIIDPITGLLTEGYAVLERDENNNVVLE 155 (409) T ss_pred HHHHHHHhcChhHHHHHHHHHHHHhCceeEEEecCCCCce-EEEEEcccceEEEeecccccceeeeEEEEecCCCceEEE Confidence 11233455678999999999998888875 677777765543332210 0110011100 Q ss_pred EEEecc----------------------cEEEecCCCCCCCcccccch----hhhHHHHHHHHHHHHHHHHHHHccCCCc Q lcl|Aclame:pro 153 TAFAPG----------------------SVFHLLEPDINQELYGLPEY----LSALNSAWLNESATLFRRKYYENGAHAG 206 (344) Q Consensus 153 ~~~~~~----------------------eIih~~~~~~~~~~~G~sp~----~~~~~~i~~~~~a~~~~~~~f~Ng~~p~ 206 (344) ..+.++ .|++|.+..-.++.+|.|.+ ..+.+++.-...-..-...||.+ |- T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~~~~~~~~G~seI~~~v~~l~da~~r~~~~~~~~~e~~a~---pq 232 (409) T protein:vir:16 156 AHFLPDRTDYYYRDSRNNISIANPTGNPLLVPIIHRPDAVRPFGRSRITRSGMYWQSNAKRTLERADVTAEFYSF---PQ 232 (409) T ss_pred EEEecCcEEEEEecCccccceecCCCCcceEEecccccccccCCccccchhHHHHHHHHHHHHHHHHHHHHHhcC---hh Confidence 011111 25565533222456788755 34444444443333444455543 44 Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChH Q lcl|Aclame:pro 207 YIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQ 286 (344) Q Consensus 207 gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~ 286 (344) -++. +...+.+..+ .|+... ++++.+..+.+..+.++..+....-+ .|++..+.....++++=++|++ T Consensus 233 r~i~--G~d~d~~~~~----~~~~~~-----~~i~~~~~d~~g~~~~v~q~~~~~l~-~~~~~l~~~~~~~a~~s~lP~~ 300 (409) T protein:vir:16 233 KYVT--GLSDDAEPME----TWKATV-----SSMLQFTKDEDGDKPTLGQFTQPSMS-PFTEQLRTAAAGFAGETGLTLD 300 (409) T ss_pred heeE--ecCCCCCccc----hhhhhh-----hHhhccCCCCCCCCceEEecCCCChh-HHHHHHHHHHHHHhhhcCCCHH Confidence 3332 2211222222 233221 23444433333345677666544432 4999999999999999999999 Q ss_pred HhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc-------------------------eecccccc-- Q lcl|Aclame:pro 287 LMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIREINGWIGQEV-------------------------IRFKNYSL-- 339 (344) Q Consensus 287 llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~ln~~L~~~~-------------------------irf~~y~l-- 339 (344) .+|....+.++..-+..+ ..|++...+.-++.++.-. ++|.+-.- T Consensus 301 ~lg~~~~NpsSa~Ai~a~--------~~~L~~ka~~k~~~fg~~l~~~~rla~~~~~~~~~~~~~~~~~~v~W~~~~~~~ 372 (409) T protein:vir:16 301 DLGFVSDNPSSVEAIKAS--------HENLRLAGRKAQRSLGAGLLNVAYLAACLRDDVPYLREQFSKTKPKWEPLFEAD 372 (409) T ss_pred HcccccCchhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhccceEEecCCCCcc Confidence 999765443332222222 2222222222222221110 11221000 Q ss_pred -----ccCCC Q lcl|Aclame:pro 340 -----DTDNG 344 (344) Q Consensus 340 -----~~d~g 344 (344) ..-++ T Consensus 373 ~~s~a~~aDa 382 (409) T protein:vir:16 373 ASMLSLIGDG 382 (409) T ss_pred hhhHHHHHHH Confidence 00000 No 137 >protein:vir:9751 Length: 422 # NCBI annotation: putative structural protein # Family: family:all:524 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795513;genbank:gi:28876291;genbank:GeneID:1257832 Probab=97.21 E-value=0.00013 Score=41.91 Aligned_cols=284 Identities=10% Similarity=0.088 Sum_probs=115.5 Q ss_pred cCcchh---hhhhh-----hhccchhhhc-------cccH-HHHHHHHhhh-hhhhhhhhhcchhh--H----------H Q lcl|Aclame:pro 35 LDRRDI---LDYVE-----CISNGRWYEP-------PVSF-TGLAKSLRAA-VHHSSPIYVKRNIL--A----------S 85 (344) Q Consensus 35 ~~~~~~---~~~~~-----~~~~~~~~~~-------p~~~-~~l~~~~~~~-~~~~~~i~~k~n~~--~----------~ 85 (344) |+...+ .+.+. +....+||+- |+.+ ..+..+.+.. ..-.-++..-...+ - . T Consensus 1 m~~~~i~~L~~~~~~~~~r~~~~~~yy~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~~Vd~~a~rl~~~Gf~~~d~~l~~ 80 (422) T protein:vir:97 1 MNYMGMGYLRRKLALFKTGVDKRYRYYAMDDRDDTRSIVMPNNVREMYRSVLEWTAKGVDSLADRIIFREFTNDDFNAWE 80 (422) T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhcCccccHHHHHHHHhhcchhHHHHHHHHhccccceeeCCchhHHH Confidence 433222 11111 0011223321 1111 2222222211 11111111111100 0 0 Q ss_pred hhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCC-CCceEEEEEeCcceeeccccCce--------eEEEcCCceE---E Q lcl|Aclame:pro 86 TFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYST-TGKVIRLETSPAKYTRRGVEEDV--------YWWVPSFNEP---T 153 (344) Q Consensus 86 ~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~-~G~~~~L~pl~~~~~~~~~~~~~--------~~~~~~~~~~---~ 153 (344) .+.-|.+ -.....+..+.+.+|.+|+.+.++. .|.| .+.+++|..+....++.. +|.....+.. . T Consensus 81 ~w~~N~l--d~~~~~~~~~al~~G~sf~~v~~~~~~~~p-~i~~~sp~~~~~i~D~~~~~~~~a~~~~~~~~~~~~~~~~ 157 (422) T protein:vir:97 81 IFKANNP--DIFFDTAIQSALIASCCFVYIMPGAEDGLP-KMQVIEASKATGILDPTTFLLTEGYAILESDSNGNPTLEA 157 (422) T ss_pred HHHhcCh--HHHHHHHHHHHHHhcceeEEEeeCCCCCee-EEEEechhhEEEEEeCCCCcceeeEEEEEecCCCcEEEEE Confidence 0111111 1122345668899999999998864 5665 577788876654433220 1111111111 0 Q ss_pred EEec---------------------ccEEEecCCCCCCCcccccch-h---hhHHHHHHHHHHHHHHHHHHHccCCCceE Q lcl|Aclame:pro 154 AFAP---------------------GSVFHLLEPDINQELYGLPEY-L---SALNSAWLNESATLFRRKYYENGAHAGYI 208 (344) Q Consensus 154 ~~~~---------------------~eIih~~~~~~~~~~~G~sp~-~---~~~~~i~~~~~a~~~~~~~f~Ng~~p~gi 208 (344) .++. =.|++|.+..-..+.+|.|.+ . .+.+++.-...-..-...||.+ |--+ T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~~e~~a~---pqr~ 234 (422) T protein:vir:97 158 YFTDKDIWYYPKKGKPYNIKNPTGHPLLVPIIHRPDAVRPFGRSRITKAGMYHQKAAKRTLERAEVTAEFYSF---PQKY 234 (422) T ss_pred EEcCceEEEEcCCCccccccCCCCCcceEEecccCCCccccCccccchhHHHHHHHHHHHHHHHHHHHHHhcc---hhhh Confidence 1111 135666543223456888865 2 2333333222222233334333 3323 Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHh Q lcl|Aclame:pro 209 MYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLM 288 (344) Q Consensus 209 l~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~ll 288 (344) + .+...+....+ .|+.. .++++.+..+.+..+.++..+....-+ .|++..+.....|+++=++|++.+ T Consensus 235 i--~G~d~d~~~~~----~~~~~-----~~~i~~~~~de~~~~~~v~q~~~~~l~-~~~~~l~~~~~~~a~~s~lP~~~l 302 (422) T protein:vir:97 235 V--LGMDPDAKPME----KWRAT-----VSTLLEISKDEDGDKPTVGQFTTASMA-PFMEHLKMYASLFAGGSGLTLDDL 302 (422) T ss_pred h--cccCcccccCc----hhhhh-----hhhhhccCCCCCCCcceeeecCCCChh-HHHHHHHHHHHHHhcccCCCHHHh Confidence 2 23222222222 23222 124555443333345677666554432 499999999999999999999999 Q ss_pred ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc----------------eecc--ccccccC---CC Q lcl|Aclame:pro 289 GGKPENVGSLGDIEKVAKVFVRNELIPLQDRIREINGWIGQEV----------------IRFK--NYSLDTD---NG 344 (344) Q Consensus 289 G~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~ln~~L~~~~----------------irf~--~y~l~~d---~g 344 (344) |....+.++...++.+ ..|+..+.+.-++.++... .+.. +-...|. +- T Consensus 303 g~~~~NpsSa~Ai~a~--------~~~L~~ka~~k~~~fg~~l~~~~rla~~~~~~~~~~~~~~~~~~~~w~p~~~~ 371 (422) T protein:vir:97 303 GFPSDNPSSVESIKAA--------HENLRAAGRKAQRSFSSGFLNVAYIAVCLRDEFPYLRNQFMDTVIKWEPLFEA 371 (422) T ss_pred ccccCchhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhccceEEEccCCCC Confidence 9865433332222222 2222222222221111110 1111 1112221 11 No 138 >protein:vir:94742 Length: 409 # NCBI annotation: putative portal protein # Family: family:all:524 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996701;genbank:gi:45597416;genbank:GeneID:2767966 Probab=97.09 E-value=0.00017 Score=41.20 Aligned_cols=289 Identities=12% Similarity=0.097 Sum_probs=116.5 Q ss_pred cCcchhhhhhhhh--------ccchhhhc--cc-----c-HHHHHHHHhhhh-hhhhhhhhcchhhHHhhhcCCCCC--- Q lcl|Aclame:pro 35 LDRRDILDYVECI--------SNGRWYEP--PV-----S-FTGLAKSLRAAV-HHSSPIYVKRNILASTFIPHPWLS--- 94 (344) Q Consensus 35 ~~~~~~~~~~~~~--------~~~~~~~~--p~-----~-~~~l~~~~~~~~-~~~~~i~~k~n~~~~~~~pnp~~~--- 94 (344) |+...+......+ ...+||+- ++ . ...+...++... ...-++ +.++.....+.+.. T Consensus 1 ~~~~~i~~L~~~~~~~~~r~~~~~~yY~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~iV----ds~a~rl~~~Gf~~~d~ 76 (409) T protein:vir:94 1 MTEKGIGYLRFKLSVHKRRAEMRYDQYAMKYVDRFKGITIPQALSQQYRSILGWCAKGV----DSLADRLVFREFENDDF 76 (409) T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHhcccCchhhcChhhhHHHHHHHhhhcchhHHHH----HHhHhhcccCcccCCch Confidence 4443332111111 11223331 11 1 112222222111 111111 11111111111110 Q ss_pred -----------HHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCce-----eEEEc---CCceE--- Q lcl|Aclame:pro 95 -----------QQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV-----YWWVP---SFNEP--- 152 (344) Q Consensus 95 -----------~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~-----~~~~~---~~~~~--- 152 (344) ......+..+.+.+|.+|+.+..+..|+| .+.+++|..+....+... .|.+. ..+.. T Consensus 77 ~l~~i~~~N~ld~~~~~~~~~aliyG~sf~~v~~~~dg~~-~i~~~sp~~~~~i~D~~~~~~~~a~~~~~~d~~~~~~~~ 155 (409) T protein:vir:94 77 TVNEIFEENNPDIFFDSAVLSSLIASCSFTYISKGENDAV-RLQVIEAVNATGIIDPITGLLTEGYAVLERDENNNVVLE 155 (409) T ss_pred HHHHHHHhcChhHHHHHHHHHHHHhcceeEEEecCCCCce-EEEEeccceEEEEEecCCCceeeeEEEEEecCCCceEEE Confidence 11233455678999999999999888875 677777766544333211 11110 01100 Q ss_pred EEEecc----------------------cEEEecCCCCCCCcccccch----hhhHHHHHHHHHHHHHHHHHHHccCCCc Q lcl|Aclame:pro 153 TAFAPG----------------------SVFHLLEPDINQELYGLPEY----LSALNSAWLNESATLFRRKYYENGAHAG 206 (344) Q Consensus 153 ~~~~~~----------------------eIih~~~~~~~~~~~G~sp~----~~~~~~i~~~~~a~~~~~~~f~Ng~~p~ 206 (344) ..+.++ .|++|.+..-.++.+|.|.+ ..+.+++.-...-......||.+ |- T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~n~~g~vPvV~f~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~~e~~a~---pq 232 (409) T protein:vir:94 156 AHFLPDRTDYYYRDSRNNISIANPTGHPLLVPIIHRPDAVRPFGRSRITRSGMYWQSNAKRTLERADVTAEFYSF---PQ 232 (409) T ss_pred EEEecCcEEEEEecCceeEeeeCCCCCcceEEeccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHhcC---hh Confidence 011111 24566533223467888865 23334433333333333445444 43 Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChH Q lcl|Aclame:pro 207 YIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQ 286 (344) Q Consensus 207 gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~ 286 (344) -++. +...+.+..+.++... ++++.+..+.+..+.++..+....- ..|++..+....+++++=++|++ T Consensus 233 r~i~--G~d~d~~~~~~~~~~~---------~~i~~~~~d~dg~~~~v~q~~~~~l-~~~~~~l~~~~~~~a~~t~lP~~ 300 (409) T protein:vir:94 233 KYVT--GLSDDAEPMETWKATV---------SSMLQFTKDEDGDKPTLGQFTQPSM-SPFTEQLRTAAAGFAGETGLTLD 300 (409) T ss_pred heeE--ecCCCCcccchhhhhH---------HHhhcCCCCCCCCCceEEecCCCCh-hHHHHHHHHHHHHHhhhcCCCHH Confidence 3332 2211222233332222 1233333222234566666644332 24999999999999999999999 Q ss_pred HhccccccccccccHHHHHHHHHHHHHHHHHHHH----HHHHHhh----Cc-cceecc--ccccccC---CC Q lcl|Aclame:pro 287 LMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRI----REINGWI----GQ-EVIRFK--NYSLDTD---NG 344 (344) Q Consensus 287 llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~i----e~ln~~L----~~-~~irf~--~y~l~~d---~g 344 (344) .+|....+.++..-+..+....... ..=.++.+ +++.+.. +. ...+.+ .-++.+. +- T Consensus 301 ~lg~~~~NpsSa~Al~a~~~~L~~~-a~~k~~~fg~~~~~~~rla~~i~~~~~~~~~~~~~~~v~W~p~~~~ 371 (409) T protein:vir:94 301 DLGFVSDNPSSVEAIKASHENLRLA-GRKAQRSLGAGLLNVAYLAACLRDDAPYLREQFRKTKPKWEPLFEA 371 (409) T ss_pred HhccccCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccceEEeccCCCc Confidence 9997654433322222222111111 11111111 1211111 10 000111 1111121 11 No 139 >protein:vir:105782 Length: 449 # NCBI annotation: gp5 # Family: family:all:6783 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224143;genbank:gi:62362218;genbank:GeneID:3342535 Probab=96.91 E-value=0.00026 Score=40.20 Aligned_cols=314 Identities=13% Similarity=0.027 Sum_probs=127.8 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) ||+|-...-..+..+.+.+-.+. +|-++ +++.++--|-. .+.-.|...++...|..++|.+.....++..-. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~rd---~l~~~--~~glg~~r~~~---~~~~g~~~~~~~~~l~~~Yr~~~ia~~iVd~~~ 72 (449) T protein:vir:10 1 MTDKLTLAVNHALNDARMARARM---GLMVP--TMGLDNKRHSA---WCEYGFPELVTYENLYSLYRRGGIAHGAVEKLV 72 (449) T ss_pred CchhhHHHHhhhcchhHHHHHHH---HHHHH--HhcCCcccchh---hhhcCCcccCCHHHHHHHHhcCchhHHHHHhhh Confidence 99985431111111111000000 01111 11111111111 111123444566667777777665555544322 Q ss_pred hhhHHhh-------hcCCC-------------CCHHHHHHHHH---HHHhcCCceEEEe-eCC---------CCceEEEE Q lcl|Aclame:pro 81 NILASTF-------IPHPW-------------LSQQDFSRFVL---DFLVFGNAFLEKR-YST---------TGKVIRLE 127 (344) Q Consensus 81 n~~~~~~-------~pnp~-------------~~~~~~~~~~~---d~ll~Gnay~~~~-r~~---------~G~~~~L~ 127 (344) ...-... ..... .....|.++.. --.++|-|.+.+. +++ .+.+..|. T Consensus 73 d~~~~~~~~i~~g~~~~~~~~~~~~e~~~~~l~~~~~~~~l~ea~~~~rl~Gga~i~i~v~d~~~l~~Pl~~~~~i~~i~ 152 (449) T protein:vir:10 73 GKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVS 152 (449) T ss_pred hhhhhcCcccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcEEEEEEecCCCCCCcccccCcceeeEE Confidence 2110000 00000 00111222211 1136777776653 332 23455666 Q ss_pred EeCcceeecc---cc--Cc-----eeEEEcC-----CceEEEEecccEEEecCCCCCCCcccccchhhhHHHHHHH-HHH Q lcl|Aclame:pro 128 TSPAKYTRRG---VE--ED-----VYWWVPS-----FNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLN-ESA 191 (344) Q Consensus 128 pl~~~~~~~~---~~--~~-----~~~~~~~-----~~~~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~-~~a 191 (344) |+....+.+. .+ .. .+|++.. ....+.+.+.-|+||... +.-|.|-++.+.+.+... ..+ T Consensus 153 v~~~~~i~~~~~~~dp~sp~yg~P~~y~v~~~~~g~~~~~~~iH~SRl~~~~~~----~~~g~~~L~~~yn~l~~~~~~~ 228 (449) T protein:vir:10 153 VSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVE 228 (449) T ss_pred eeccccCChhhhhcCCCCCCCCCceEEEEeeeccCCCccceeeccceeEeecCC----CCCChhHHHHHHHHhhhHHHhh Confidence 6655433322 11 11 2455542 123356778888888543 223777777776654222 222 Q ss_pred HHHHHHHHHccCCCceE-----------EEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCC Q lcl|Aclame:pro 192 TLFRRKYYENGAHAGYI-----------MYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEV 260 (344) Q Consensus 192 ~~~~~~~f~Ng~~p~gi-----------l~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~ 260 (344) .-+...+++|-.+--.+ .... +...++..+++.+.++....+. ..+++. .+-+++.++.+ T Consensus 229 ~~~a~~~l~~~~rq~~~~~~~~~~~~~l~~~~-~~~~e~~~~~~~~~~~~~~~~~--~~~~i~------~~~d~~~~~~~ 299 (449) T protein:vir:10 229 GGSGESFLKNAARQLNVNFEKEIDFTNLASLY-GVSIDELQDKFNEVAGEINRGN--DVLMTT------QGATVTPLVTS 299 (449) T ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhhhHHh-hCCchHHHHHHHHHHHHHhccc--hheeec------CCcceEEEecc Confidence 22333344432211111 1111 1123344445555554432211 123332 22235555544 Q ss_pred hhHHHHHHHHHhhHHHHHHHhcCChH-HhccccccccccccHHHHHHHHHH------HHHHHHHHHHHH-HHH-hhCccc Q lcl|Aclame:pro 261 ATKDDFFNIKKASAADLLDAHRIPFQ-LMGGKPENVGSLGDIEKVAKVFVR------NELIPLQDRIRE-ING-WIGQEV 331 (344) Q Consensus 261 ~~d~qf~e~~~~~~~~I~~~fgVPp~-llG~~~~~~~~~~n~e~~~~~f~~------~~l~P~~~~ie~-ln~-~L~~~~ 331 (344) ..+ +-++-....++||++-+||.. |+|..+++ ++..+ -.+.||. ..|.|.++++-+ |-. .++.. T Consensus 300 ~sg--l~d~l~~~~q~iaaa~~IP~t~L~Gqsp~g---lnst~-D~~nyyd~i~~~Q~~l~p~le~l~~~l~~s~~g~~- 372 (449) T protein:vir:10 300 VAD--PTATYNVNLQTAAAGVDIPTRILIGNQQAE---RSSTE-DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA- 372 (449) T ss_pred cCC--hhHHHHHHHHHHHHHhCCCeeeeeccCccc---cccch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCC- Confidence 433 233444567889999999986 55766533 22223 2334432 234555544433 111 11211 Q ss_pred eeccccccccCCC Q lcl|Aclame:pro 332 IRFKNYSLDTDNG 344 (344) Q Consensus 332 irf~~y~l~~d~g 344 (344) -.++.++|..= T Consensus 373 --~~d~~i~f~pL 383 (449) T protein:vir:10 373 --VAKKAVIWDDL 383 (449) T ss_pred --CCceeEEeCCC Confidence 12455555554 No 140 >protein:vir:80680 Length: 441 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285579;genbank:gi:148727085;genbank:GeneID:5247051 Probab=96.63 E-value=0.00045 Score=38.91 Aligned_cols=289 Identities=12% Similarity=0.077 Sum_probs=112.8 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) ..+..-+..... .....+.. ..+. .+...+-+ .++..+.-.++. +-. . T Consensus 31 ~G~~~i~~~~~~---~~~~~~~~--------k~~~------n~~~~ivd-----------~~~~~l~~~g~~--~~d--~ 78 (441) T protein:vir:80 31 EGSNRVRDLGVA---IPPELQRV--------QTVV------SWPGIAVD-----------ALEERLDWLGWT--NGD--G 78 (441) T ss_pred hcCCcchhcCcc---cchhhhhh--------hhhc------chHHHHHH-----------HHHhhhcccccc--CCC--h Confidence 222111000000 00000000 0000 01100000 000000000000 000 0 Q ss_pred hhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCce--------eEEEcC---- Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV--------YWWVPS---- 148 (344) Q Consensus 81 n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~--------~~~~~~---- 148 (344) ..+-..+..|. .......++.+.+.+|.||..+.++..|.+ .+..++|..+.+..+... +|.... T Consensus 79 ~~l~~i~~~n~--~~~~~~~~~~~~~~~G~a~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~~~~~~~~~~~~ 155 (441) T protein:vir:80 79 YGLDGVYAANR--LATASCDVHLDALIFGLSFVAIIPHGDGTV-SVRPQSPKNCTGKFSADGSRLDAGLVVQQTCDPEVV 155 (441) T ss_pred HHHHHHHHhcC--HHHHHHHHHHHHhhcCeeEEEEEeCCCCce-EEEEEccceEEEEEeCCCCceeEEEEEEEEecCceE Confidence 00111111221 123455677899999999999999988976 467777776544322110 010000 Q ss_pred ------CceEE------------------EEecccEEEecCCCCCCCcccccchhh----hHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 149 ------FNEPT------------------AFAPGSVFHLLEPDINQELYGLPEYLS----ALNSAWLNESATLFRRKYYE 200 (344) Q Consensus 149 ------~~~~~------------------~~~~~eIih~~~~~~~~~~~G~sp~~~----~~~~i~~~~~a~~~~~~~f~ 200 (344) .+..+ .|..=.|+|+.+..-....+|.|.+.- +.+++....+-..-...+| T Consensus 156 ~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~l~~~v~~liDa~~~~~s~~~~~~~~~- 234 (441) T protein:vir:80 156 EAELLLPDVIVQVERRGSREWVEVDRIPNVLGAVPLVPIVNRRRTSRIDGRSEITRSIRAYTDEAVRTLLGQSVNRDFY- 234 (441) T ss_pred EEEEEecCeEEEEEEcCCcceeeccccccCCCceeEEEeeccccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHhh- Confidence 01111 111113566664433345678886543 3333333332222223333 Q ss_pred ccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHH Q lcl|Aclame:pro 201 NGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDA 280 (344) Q Consensus 201 Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~ 280 (344) +.|- +.+++..++++..+. ++. ..++++.+.++.+..+.++..+.... -..|++..+.....|+.. T Consensus 235 --~~~~--~~i~G~~~~~~~~~~----~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~i~~~~~~ 300 (441) T protein:vir:80 235 --AYPQ--RWVTGVSADEFSQPG----WVL-----SMASVWAVDKDDDGDTPNVGSFPVNS-PTPYSDQMRLLAQLTAGE 300 (441) T ss_pred --cCce--eeeecCCccccccch----hhh-----cccccccCCCCCCCCcceeEecCccc-hHHHHHHHHHHHHHHhcc Confidence 3443 344454444433222 111 12334444444433455665554332 233788888889999999 Q ss_pred hcCChHHhccccccccccccHHHHHHHHHHHHHHHHHHHH--------HH----HHHhhCccce-e--ccccccccCCC Q lcl|Aclame:pro 281 HRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRI--------RE----INGWIGQEVI-R--FKNYSLDTDNG 344 (344) Q Consensus 281 fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~i--------e~----ln~~L~~~~i-r--f~~y~l~~d~g 344 (344) -++|+..+|..+.+.+++.-++ +....|.=.+.+. .+ +...++.... . +...++.|.+. T Consensus 301 ~~~p~~~~g~~~~~~~Sg~Al~-----~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~~i~~~f~~~ 374 (441) T protein:vir:80 301 AAVPERYFGFITSNPPSGEALA-----AEESRLVKRAERRQTSFGQGWLSVGFLAAKALDSRVDEADFFGDVGLRWRDA 374 (441) T ss_pred cCCCHHHhccCCCcchHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccceeeeEEeCCC Confidence 9999999987543322221111 1111111111111 11 1111221110 0 11223345444 No 141 >protein:vir:4073 Length: 279 # NCBI annotation: minor structural protein # Family: family:all:11744 # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043552;genbank:gi:9628686;genbank:GeneID:1261159 Probab=96.42 E-value=0.0002 Score=40.90 Aligned_cols=257 Identities=16% Similarity=0.144 Sum_probs=127.7 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) ||.....+++.. -+...|+--||..-+-.+-++..+.+++|-+|-+. .+|-.+ T Consensus 1 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--------------- 53 (279) T protein:vir:40 1 MSLFNLSRRAED--------VSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEA----SKLEDL--------------- 53 (279) T ss_pred Ccccccchhhcc--------cceeeeeecCcchhHHHHHHHHHHHHhhcccchhh----hhhhhh--------------- Confidence 887775544322 12456777777665544444444544455444211 000000 Q ss_pred hhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCceeE--EEcCCceEEEEecc Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYW--WVPSFNEPTAFAPG 158 (344) Q Consensus 81 n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 158 (344) .-|.+.|--...++..+. .+.......+.|- ...+..+.+++|-. T Consensus 54 ----------------------~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~d~fn~~vr~~~~~~vtVP~~ 100 (279) T protein:vir:40 54 ----------------------FYWALQGKEVYRVWYGGF-----------KYYAQRVNADQFNIVVREPNRREVTIRTN 100 (279) T ss_pred ----------------------hhhhhccceeehhhhhhH-----------HHHHhhcCcchhhhheecCCcceeEeecc Confidence 011222221111111110 0110111111111 11223445666666 Q ss_pred cEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHh-hccccc Q lcl|Aclame:pro 159 SVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKS-KGRNNF 237 (344) Q Consensus 159 eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~-~g~~n~ 237 (344) ||--|- ++.||.-+=. .-.-++++. +--.+++ .+-+...++++++-....++.+++.+.++++. .+..+. T Consensus 101 Dv~Iie-----NPlv~v~~ee-~~kM~~la~--nai~~KL-D~~~qIk~fIKTd~d~glee~kekaR~rIk~mlalAk~~ 171 (279) T protein:vir:40 101 DYEMLL-----NPFYGANPQR-FGVMFGMAS--NGIGRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREF 171 (279) T ss_pred hhhhhh-----cchheeccch-hhHHHHHHH--hhhhhhh-cccceeeeEEecCcchhHHHHHHHHHHHHHHHHHHHHhc Confidence 664443 3446665532 222223332 2223444 66667777777654445688889999888764 556666 Q ss_pred ccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 238 KNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQ 317 (344) Q Consensus 238 ~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~ 317 (344) +.+.+++ .|-+++.|.-+-.-. ..+--++.+.+.+..||||..++= ++ ..|++..+|+..+|.|++ T Consensus 172 nGityid-----~~ddItQL~kDYSts-lk~die~lkS~l~Sq~GinekIL~----Gs----AtE~q~iAyy~rtVePIL 237 (279) T protein:vir:40 172 NGVSVIG-----SDDDIKQIQPDYSGS-LQNDANLAIEIALSEYGMPRELLY----GQ----SNEVTIIAFAIQKVLPLL 237 (279) T ss_pred CCeeeec-----CCceeEeeccccccc-cHHHHHHHHHHHHhhcCCchhhcc----cc----CchhhhhhHHHhhHHHHH Confidence 7777774 355566665432211 222344566789999999988872 22 237888999999999999 Q ss_pred HHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 318 DRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 318 ~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) .+.+- |-. ..|. |-.|--..--| T Consensus 238 kQyek~liY--~~E~--fv~y~ttta~g 261 (279) T protein:vir:40 238 KQHDKNIIF--NQEN--FVAYISTTAKG 261 (279) T ss_pred HHhcccccc--hhhh--hhhhheecccC Confidence 88652 211 1222 22222222222 No 142 >protein:vir:99522 Length: 470 # NCBI annotation: putative protein # Family: family:all:125 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958533;genbank:gi:41179315;genbank:GeneID:2717160 Probab=95.91 E-value=0.0013 Score=36.47 Aligned_cols=290 Identities=9% Similarity=-0.034 Sum_probs=115.0 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) +.++++. ..+. .++ +..|.. .+.+ ...+-.+..|+.+. +-.... T Consensus 59 ~~~~~~~--~~~~-------~ki-~~n~~~--------~Ivd----~~~~~l~g~p~~~~--------------~~~d~~ 102 (470) T protein:vir:99 59 LTAPEKE--TGAD-------NRI-VVNSAK--------YVVD----VYNGYFCGIEPKLA--------------LLNDSS 102 (470) T ss_pred ccCcccc--cCCc-------cee-ecchHH--------HHHH----HHhhhhccCCeeEe--------------eCCchh Confidence 2111100 0000 000 000000 0000 00011111222210 000000 Q ss_pred --hhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---------eeEEEcCC Q lcl|Aclame:pro 81 --NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPSF 149 (344) Q Consensus 81 --n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~~~~~~~ 149 (344) ..+...+..|. ....+..++.+.+.+|.+|..+..+..|++ .+..++|..+.+..+.. ++|....+ T Consensus 103 ~~~~l~~~~~~n~--~~~~~~~~~~~~~~~G~~~~~v~~d~dg~~-~i~~~~p~~~~~i~d~~~~~~~~~~vr~~~~~~~ 179 (470) T protein:vir:99 103 KIDEIARWNRQEN--FFDTINEISKQCDIFGRSIASIYQGEDARP-HLMYSSPNHAFIIYDDTVQRQPLAFVHYQIDNSN 179 (470) T ss_pred HHHHHHHHHHhcC--HhHHHHHHHHHHHhcCeeEEEEEeCCCCeE-EEEEEccceeEEEEcCCCCcceEEEEEEEEEecC Confidence 00111122221 124566788899999999999988888875 46667776654432221 01111111 Q ss_pred ceE----EEEeccc---------------------------EEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 150 NEP----TAFAPGS---------------------------VFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKY 198 (344) Q Consensus 150 ~~~----~~~~~~e---------------------------Iih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~ 198 (344) +.. ..+.++. |+++++ .-.|.|.+......++....+..-..+. T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~sd~e~v~~liDa~~~~~s~~~~~ 254 (470) T protein:vir:99 180 NWTDAYGVIQYADKFYKFKGYDIEEDTNAAGYAINPYGLVPAVEFFE-----NEERQGIFDSIKTLINALDKVISQKANQ 254 (470) T ss_pred CeeEEEEEEEecCeEEEEEecccccccccccccccCCCccceEeecC-----CCCCCcchHhHHHHHHHHHHHHHHHHHH Confidence 110 0111222 222221 2357777776666666555544444555 Q ss_pred HHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 199 YENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLL 278 (344) Q Consensus 199 f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~ 278 (344) +...+.|-.++ ++..+++++.......+.. .+++.+.+.....+-++..+........+.+..+.-.+.|+ T Consensus 255 ~~~~~~~~~~i--~g~~~~~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~ 325 (470) T protein:vir:99 255 VEYFDNAYMYM--IGFKLPEDDEGNPKFDFKN-------NRVLYVSQLDPDTNPQIGFIAKPDADQMQENLIQHLTDFIF 325 (470) T ss_pred HHHhcCceeee--ecCCcccccccchhhhhhh-------cceeeecCCCCCCCCcceEEeecCChHHHHHHHHHHHHHHH Confidence 56666665554 4433333221111111211 12232322222233334444444445556677888899999 Q ss_pred HHhcCChHHhccccccccccccHHH----------HHHHHHHHHHHHHHHHHHHHHHhhCccceeccccccccCCC Q lcl|Aclame:pro 279 DAHRIPFQLMGGKPENVGSLGDIEK----------VAKVFVRNELIPLQDRIREINGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 279 ~~fgVPp~llG~~~~~~~~~~n~e~----------~~~~f~~~~l~P~~~~ie~ln~~L~~~~irf~~y~l~~d~g 344 (344) ..-++|+...+-..++ .++.-++- ..+..+...|.-+++.+..+-...+..-....+..+.|..+ T Consensus 326 ~~s~~p~~~~~~~~~n-~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~v~f~~~ 400 (470) T protein:vir:99 326 MMAMVPNIQDKNFAGN-SSGVALQYKLFAMKNKADSKERKFDKSLMQLYRIVLATLFNNKQDQELWSELDFKFTRN 400 (470) T ss_pred HHhCCccccccccccC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccceEEeCCC Confidence 9999997544322111 11111110 01112222222222222221111111111223446667666 No 143 >protein:vir:98444 Length: 434 # NCBI annotation: hypothetical protein # Family: family:all:5096 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958276;genbank:gi:41057250;genbank:GeneID:2732828 Probab=95.79 E-value=0.0014 Score=36.15 Aligned_cols=288 Identities=8% Similarity=-0.039 Sum_probs=113.2 Q ss_pred ccCcchhhhhhhhhc--cchhhhccccHHHHHHHHhhhhhhhhhhhhcchhhH-HhhhcCCCCCHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 34 VLDRRDILDYVECIS--NGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKRNILA-STFIPHPWLSQQDFSRFVLDFLVFGN 110 (344) Q Consensus 34 ~~~~~~~~~~~~~~~--~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~n~~~-~~~~pnp~~~~~~~~~~~~d~ll~Gn 110 (344) .|+.+.--.|-.... --.|.. .-+..++..+.-+.+. +-..+.+..+ ..+..|.+ ......+..+.+.+|. T Consensus 1 ~l~~~~~~~~~~~~~~~v~n~~~--~ivd~~~~~l~~~gf~--~~d~~~~~~~~~i~~~N~~--d~~~~~~~~~a~i~G~ 74 (434) T protein:vir:98 1 MLPKNAEQAFLDFQRKARTNFCG--LIANASVHRLLALGVT--GPDGEPDTRASRWWQANRL--DSRQKLVWRMAMAQSA 74 (434) T ss_pred CCCCCccHHHHHhhhhhhccchH--HHHHHHHhhhccCcee--cCCCchHHHHHHHHHhcCh--hHHHHHHHHHHhhcCc Confidence 111111000000000 000110 0111122111111110 0001111111 11222322 1234456778899999 Q ss_pred ceEEEeeCCCCc-----e-EEEEEeCcceeeccccCc--------eeEEEcCCce------------------------- Q lcl|Aclame:pro 111 AFLEKRYSTTGK-----V-IRLETSPAKYTRRGVEED--------VYWWVPSFNE------------------------- 151 (344) Q Consensus 111 ay~~~~r~~~G~-----~-~~L~pl~~~~~~~~~~~~--------~~~~~~~~~~------------------------- 151 (344) +|+.+.++..+. + ..+..++|.++.+..+.. .+|....++. T Consensus 75 ay~~v~~~~~~~~~~~~~~~~I~~~~p~~~~~i~D~~~~~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (434) T protein:vir:98 75 GYMLVGAHPTRTEDNGRPSPLITMEHPSECIVEYDPETGEPLVGLKVWHNDIDGFGYARVFFDDTSFPYRTRERTGARLP 154 (434) T ss_pred eEEEEecCCCcccccCCceeEEEEeccceeEEEEeCCCCceEEEEEEEEeccCCceEEEEEEeCcEEEEEEeeccccccc Confidence 999998765442 1 236667776654333221 0111111110 Q ss_pred ----------------EEEEecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCC Q lcl|Aclame:pro 152 ----------------PTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAV 215 (344) Q Consensus 152 ----------------~~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~ 215 (344) .+.|..=.|+|+++..-.++ .|.|.++.....++....+..-.....+-.+.|--+| ++.. T Consensus 155 ~~~~~~~~~~~~~~~~~h~~g~vPvv~f~N~~~~~~-~g~sd~e~vi~liDa~~~~~s~~~~~~~~~a~p~~~i--~G~~ 231 (434) T protein:vir:98 155 WGPDSWVYTGTADSGDVHDLGGMQLVEFARMPDLGE-DPEPEFAGVLDIQDRVNLGILNRMAASRFSGFRQKWI--KGHK 231 (434) T ss_pred cccccceecccccccccCCCCccceEEeccCCCcCc-CCcchhhhHHHHHHHHHHHHHHHHHHHHHhcchhhhh--cCCC Confidence 00111123566654322223 5888888777777666665555555444455564444 3322 Q ss_pred CCHHHH--HHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccc Q lcl|Aclame:pro 216 QDRNDI--EMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPE 293 (344) Q Consensus 216 ~~~e~~--~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~ 293 (344) +++..- ......++.... ..+.++++. ..+.++..+..... ..|++..+....+|++.=++|++.+|...+ T Consensus 232 ~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~----~~~~~~~q~~~~~~-~~~~~~l~~~i~~~~~~~~~p~~~~~~~~~ 304 (434) T protein:vir:98 232 FAKRTDPATGMTVVDQPFVP--SPSAVWASE----GENTQFGQLDATDL-SGFLKEHASDVRDMLTISQTPTYLYATDLV 304 (434) T ss_pred cccccccccccchhhhhhhc--cccccccCC----CCCceEEEecCcch-HHHHHHHHHHHHHHhcccCCCHHHhccccC Confidence 222111 111111221111 112344332 23456666554332 338888888899999999999999985322 Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHH-----HHH---h----hCccceeccccccccCCC Q lcl|Aclame:pro 294 NVGSLGDIEKVAKVFVRNELIPLQDRIRE-----ING---W----IGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 294 ~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-----ln~---~----L~~~~irf~~y~l~~d~g 344 (344) + ++ .+.+ .+....|.-.+.+.+. +.+ . .|... .....++.|.+. T Consensus 305 n-~S---g~Al--~~~~~~l~~k~~~k~~~f~~~l~~~~rl~~~~~g~~~-~~~~~~v~w~~~ 360 (434) T protein:vir:98 305 N-IS---ADTI--GALDILHVAKVREHIASFSEGLESVLALAAAQAGVPE-DYTEAEVRWANP 360 (434) T ss_pred C-hH---HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh-hheeeeEEecCC Confidence 2 11 1211 1222222211111111 110 0 01110 001122333333 No 144 >protein:vir:102426 Length: 631 # NCBI annotation: gp11 # Family: family:all:2798 # MgeID: mge:1618 # MgeName: Pipefish # Cross-refs: genbank:acc:YP_655288;genbank:gi:109521851;genbank:GeneID:4157741 Probab=95.59 E-value=0.0016 Score=35.91 Aligned_cols=333 Identities=12% Similarity=0.098 Sum_probs=149.4 Q ss_pred CC----CCCCCCCCc----chhhcccccccee----EEEcCCceeccCcc-hhhhhhhhh-------ccchhhhccccHH Q lcl|Aclame:pro 1 MS----KKKGKTPQP----AAKTMTASAPKME----AFTFGEPVPVLDRR-DILDYVECI-------SNGRWYEPPVSFT 60 (344) Q Consensus 1 m~----~~~~~~~~~----~~~~~~~~~~~~~----~f~~~~p~~~~~~~-~~~~~~~~~-------~~~~~~~~p~~~~ 60 (344) |. .|--|++-. +..+.++++..+. .|+..- .+..+. |=.+..++. +--.|..+.++.. T Consensus 1 ~~a~~~lr~~rrpkg~~~a~~r~L~aAs~~~~dpg~~~~~~~--g~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~sr~ 78 (631) T protein:vir:10 1 MAATQSLRLVRRPKGGRPAPSRALTAASQPLPDPSQVFSKST--GISRNSDWQTDAWEAVDLVGELRYYVGWRASSCSRC 78 (631) T ss_pred CCcccceeeeecCCCCCccchhhhhhhhccccchhhhhhhhc--CCcccchhhHHHHHHHHhhhhHHHHhhhhhhhhcee Confidence 32 222222111 1123333333321 111110 001110 111111111 1111222222221 Q ss_pred HHH--H-----------HHhhhhhhhhhhhhcchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEe-eCCCCc---- Q lcl|Aclame:pro 61 GLA--K-----------SLRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKR-YSTTGK---- 122 (344) Q Consensus 61 ~l~--~-----------~~~~~~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~-r~~~G~---- 122 (344) .|. + +-+..+.+.++ ..+....-..++.-.+.+++++.++-+-|.+|+-+. |...|. T Consensus 79 rL~as~idpDtg~ptg~iee~~~~~~~v-----~~~~~~i~gG~lgQ~~llkrl~~~ltV~GE~wiv~l~~p~~~~~~~p 153 (631) T protein:vir:10 79 RLVASELDENTGLPTGGISEDNTEGERV-----REIVSKIADGTLGQAALTKRVVECLTVPGELWIVILTRPVKGAPAQP 153 (631) T ss_pred eeEeeeeccCCCCCccccccCCchhHHH-----HHHHHhcCCCcchHHHHHHHHHhheecccceEEEEEeccCcCCCCCc Confidence 110 0 00011111110 111111222333345667888888889999998764 333221 Q ss_pred ------eEEEEEeCcceeeccccCce-eEEEcCCceEEEEec-ccE-EEecCCCCCCCcccccchhhhHHHHHHHHHHHH Q lcl|Aclame:pro 123 ------VIRLETSPAKYTRRGVEEDV-YWWVPSFNEPTAFAP-GSV-FHLLEPDINQELYGLPEYLSALNSAWLNESATL 193 (344) Q Consensus 123 ------~~~L~pl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~eI-ih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~ 193 (344) .-+++++....+.....++. -+.++ .|..+.|.. .|| +.+=.++|..-.+--||..+++.++.--.-.++ T Consensus 154 d~~~r~~~~W~~vt~~ei~~~~~g~g~~v~lp-~g~~h~~~~~~D~l~RiW~P~prr~~e~dSpvra~l~~l~Ei~~~t~ 232 (631) T protein:vir:10 154 DGSVRTRQEWYAVSKEEIKKSNKGSGTNIVLP-TGEEHEFVKGTDIIFRVWIPKPRKASEPDSPVRAVLDSIREIVRTTK 232 (631) T ss_pred ccccccccceeeccHHHHhcccCcccceeecC-CCCccceecCCceEEEeeCCCcccccCCcchhHHHHHHHHHHHHhhh Confidence 23455666666655444433 33333 344555544 233 334467777778899999999999888887777 Q ss_pred HHHHHHHccCCCceEEEecCCCC--------------------CHHHHHHHHHHHH----Hh---hcccccccccccC-C Q lcl|Aclame:pro 194 FRRKYYENGAHAGYIMYVTDAVQ--------------------DRNDIEMLRENMV----KS---KGRNNFKNLFLYA-P 245 (344) Q Consensus 194 ~~~~~f~Ng~~p~gil~~~~~~~--------------------~~e~~~~l~~~~~----~~---~g~~n~~~~~vl~-~ 245 (344) ..++.-+.-..-.|||.++.... .+-..+.|.+.+- .. .+...+--++|+. | T Consensus 233 ~i~aaakSRl~gnGvlflP~els~P~~~~~~~~~~g~~v~~~~g~pa~~~l~~~l~q~a~tai~De~S~aA~vPii~~~p 312 (631) T protein:vir:10 233 TIANASKSRLIGNGVLFVPHEMSLPAAQGPVSEVEGEEIAPLVGEPAVQQLTDMLFQVAETAVEDEDSQAAFIPVIAGVP 312 (631) T ss_pred HHHHHHHHHHhhCceeEeccccccCCCCCCCCCcCCccCCccccchhHHHHHHHHHHHHhhhhcCCCCccceeeeeEeec Confidence 77777777777777887764321 1113344443332 11 1222333344433 3 Q ss_pred CCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChH-HhccccccccccccHHHHHHHHHHHHHHHHHHHHHH-H Q lcl|Aclame:pro 246 QGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQ-LMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-I 323 (344) Q Consensus 246 ~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~-llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-l 323 (344) +---.+++...++..- +..-+.+|+-.+..||...-|||. ++|+..+.+=|. +=+....=++--|.|.+..|.+ | T Consensus 313 ~E~i~~i~hlkf~~ei-~e~aiktR~daI~RlA~glDi~pE~LLGlGsd~NHWs--AWqI~dedVrlHI~P~l~lic~Al 389 (631) T protein:vir:10 313 GEQIKDVKHIRFDNEI-TEVAIKTRNDAIARLAMGLDVSPERLLGLGSQTNHWS--AWQISDEDVQLHIAPVMEIFCQAL 389 (631) T ss_pred hHHhcCeeEEeecCch-hHHHHhhHHHHHHHHHhccCCchhhheeccCCccceE--EEEecccceeeecchHHHHHHHHH Confidence 3223445555544322 344678899999999999999997 667732222121 1111111223345555555443 2 Q ss_pred H-Hhh-------Cc----cceeccccccccCCC Q lcl|Aclame:pro 324 N-GWI-------GQ----EVIRFKNYSLDTDNG 344 (344) Q Consensus 324 n-~~L-------~~----~~irf~~y~l~~d~g 344 (344) . .+| |- .++=|+...|-.+.- T Consensus 390 T~q~Lrp~Le~eGvDp~kYvvW~DaS~Lt~dPd 422 (631) T protein:vir:10 390 TDQILRVTLAREGIDPSKYVVWYDPSQLTIDPD 422 (631) T ss_pred HhhHHHHHHHHhCCCHHHhEeeecCcccccCCC Confidence 2 222 11 122233333332222 No 145 >protein:vir:5839 Length: 533 # NCBI annotation: similar to portal vertex protein of head # Family: family:all:1036 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835625;genbank:gi:30044028 Probab=95.51 E-value=0.0019 Score=35.47 Aligned_cols=336 Identities=14% Similarity=0.114 Sum_probs=151.7 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchh----h-hhhhhhccchhhhc-cccHHHHHHHHhhhhh-h- Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDI----L-DYVECISNGRWYEP-PVSFTGLAKSLRAAVH-H- 72 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~----~-~~~~~~~~~~~~~~-p~~~~~l~~~~~~~~~-~- 72 (344) |-+-|.=++-......+.-. ..+|+|+-|...-....+ . .......++.+|.. --+...|.+.+|.-+. | T Consensus 1 ~~~~~~w~~~de~~~~~~~~--~~~~~~~~p~~~dG~s~i~~~~~~~~~~~~~~~~~~gg~~~n~~eLI~~YR~ma~~~p 78 (533) T protein:vir:58 1 MPSLEKYKKLNEAVNFTNFL--SPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDP 78 (533) T ss_pred CCCcchhhhhhHHHHHHHhh--chhhcccCccCCCCCccccCCCCcchhhhhhhhhhhccccccHHHHHHHHHHhhccCc Confidence 32222111111111111111 123444333211100000 0 00000011111110 0133556666665542 3 Q ss_pred --hhhhhhcchhhHHh---------hhcCCCCCH-------------HHHHHHHHHHHhcCCceEEEeeC-CCCceEEEE Q lcl|Aclame:pro 73 --SSPIYVKRNILAST---------FIPHPWLSQ-------------QDFSRFVLDFLVFGNAFLEKRYS-TTGKVIRLE 127 (344) Q Consensus 73 --~~~i~~k~n~~~~~---------~~pnp~~~~-------------~~~~~~~~d~ll~Gnay~~~~r~-~~G~~~~L~ 127 (344) .++|..-.|...-. -..|--.+. ..-..++..|.+.|..|..++-+ ..+.+.+|. T Consensus 79 EVd~AideIvneaiv~d~~~~pV~v~l~~~e~s~~iK~kI~~lldf~~~~~~~fR~WYVDGriy~Hkiik~~k~GI~elr 158 (533) T protein:vir:58 79 LISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQ 158 (533) T ss_pred chhhHHHhhhceeeEecCCCceeEeecccccccHHHHHHHHHHhcchhhhhHHHHhhhhcceeEEEeccCCcccchhhhe Confidence 33333332221100 000000111 11123456789999999988643 455688999 Q ss_pred EeCcceeeccccC---ceeEEEc-------CCceEEEEecccEEEecCC-CCCCCcccccchhhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 128 TSPAKYTRRGVEE---DVYWWVP-------SFNEPTAFAPGSVFHLLEP-DINQELYGLPEYLSALNSAWLNESATLFRR 196 (344) Q Consensus 128 pl~~~~~~~~~~~---~~~~~~~-------~~~~~~~~~~~eIih~~~~-~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~ 196 (344) .|+|..++..... ..||.+. .......++++.|+|+..- ....+-|++|-|..|...+..-.-.++..- T Consensus 159 ~lDPr~i~~vr~~~t~~eyyvy~~~~~~~~s~~~~~kI~~daI~y~~SGl~d~~~~~iisyLhkAiKp~NQLkmiEDAlV 238 (533) T protein:vir:58 159 VVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALM 238 (533) T ss_pred ecCCeeeEEEEeeccceEEEeecccccccccCccccccchhheeeeeeccccCCCCceehhhhHHHHHHHHHHHHHHHHH Confidence 9999988654332 2344333 2334567889999998642 334567889989888666555444444333 Q ss_pred HHHHccCCCceEEEecCCCC-CHHHHHHHHHHHHHhhc-------cccc---cccc----ccC-------CCCcccccee Q lcl|Aclame:pro 197 KYYENGAHAGYIMYVTDAVQ-DRNDIEMLRENMVKSKG-------RNNF---KNLF----LYA-------PQGKADGIKI 254 (344) Q Consensus 197 ~~f~Ng~~p~gil~~~~~~~-~~e~~~~l~~~~~~~~g-------~~n~---~~~~----vl~-------~~~~~~g~~~ 254 (344) -|=-.-+.=.-|+++.=+.+ ...+.+=+++-+.+++. .+.- ++.+ .+. .|+ .|.++ T Consensus 239 IYRisRAPeRRvFYIDVGNlpk~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~m~~~sMlEDyWLpRReGg--rgTEI 316 (533) T protein:vir:58 239 LYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDR--RAVEI 316 (533) T ss_pred HHhhcCChhheEEEEeecCCCccCHHHHHHHHHHhcccceEEeccCCeEeeccchhhhhhhHhhhcccccCCC--cccee Confidence 33222333334555542333 23333344444443321 0111 2221 111 222 35555 Q ss_pred eeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhC-ccce Q lcl|Aclame:pro 255 IPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIG-QEVI 332 (344) Q Consensus 255 ~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~L~-~~~i 332 (344) +.|.- .. +.-++--.+-+..+-++.+||.+.++... +-+-.+.+.....-|.+ -|.-+..+|.+ +.+.|- ..++ T Consensus 317 ~TLpG-g~-lgemeDV~YF~kkLy~ALnVP~sRl~~e~-~fgr~~eItRDEiKF~K-FI~rLR~rF~~ll~~qLilk~ii 392 (533) T protein:vir:58 317 DILQG-SK-VDLAEDVEYMLNRLISALKVPKAFIGYEG-DVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEF 392 (533) T ss_pred eecCC-CC-CCcHHHHHHHHHHHHHHhCCCeeecCCCC-CCccchhhhHHHHHHHH-HHHHHHHHHHHHHhcccccccCc Confidence 55543 22 33334455667889999999999997532 21222233333334443 46777778877 455552 2233 Q ss_pred eccccccccC--CC Q lcl|Aclame:pro 333 RFKNYSLDTD--NG 344 (344) Q Consensus 333 rf~~y~l~~d--~g 344 (344) .-++++++|. += T Consensus 393 t~eew~~~f~~Dn~ 406 (533) T protein:vir:58 393 ADQDFRLVMNRSNS 406 (533) T ss_pred chhheeeeeeccch Confidence 3233334433 33 No 146 >protein:vir:106716 Length: 698 # NCBI annotation: gp18 # Family: family:all:297 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944326;genbank:gi:38638625;genbank:GeneID:2657345 Probab=95.09 E-value=0.0028 Score=34.60 Aligned_cols=319 Identities=14% Similarity=0.130 Sum_probs=122.8 Q ss_pred CCCCCCCCCCcch---------hhc-cccccceeEEEcCCceec-cCcch------------------hhhhhhhh-cc- Q lcl|Aclame:pro 1 MSKKKGKTPQPAA---------KTM-TASAPKMEAFTFGEPVPV-LDRRD------------------ILDYVECI-SN- 49 (344) Q Consensus 1 m~~~~~~~~~~~~---------~~~-~~~~~~~~~f~~~~p~~~-~~~~~------------------~~~~~~~~-~~- 49 (344) ||++..|+++.-+ ++. -+++.-+..-+-..|+|. |.++. +...+++. .+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (698) T protein:vir:10 1 MSRRNAKKRTQLAHTGRRPEVAKAAALAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNY 80 (698) T ss_pred CCccchhhhhhhhhcCCCcchhhhhhhhhhhhhhhhccccccchhhcccccccccccccccCCCccccccccceeccccC Confidence 9988755443221 110 000000111112222222 11111 11111110 00 Q ss_pred chhhhcc--------------ccHH---------HHHHHHhhhhhhhhhhhhcchhhHHhh--hc--------------- Q lcl|Aclame:pro 50 GRWYEPP--------------VSFT---------GLAKSLRAAVHHSSPIYVKRNILASTF--IP--------------- 89 (344) Q Consensus 50 ~~~~~~p--------------~~~~---------~l~~~~~~~~~~~~~i~~k~n~~~~~~--~p--------------- 89 (344) +.+...+ ++++ .|+.+..... +.++..+.... ++ T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~~la~laQ~~e------yr~~~~~ia~e~~R~w~~~~~~~~e~~~~~ 154 (698) T protein:vir:10 81 TPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPE------YRAMHEVLADECIRTWGEAIGGTKEKADTS 154 (698) T ss_pred CccccchhhhhhcccccccccchhhhccCcchHHHHHHHhhccc------hhhHHHHHHHHhhcccceeccccchhhhhh Confidence 0010011 0110 0111111000 00111110000 00 Q ss_pred ------C--CCCC----------------HHHHHHHHHHHHhcCCceEEEeeCC-----------------CCceEEEEE Q lcl|Aclame:pro 90 ------H--PWLS----------------QQDFSRFVLDFLVFGNAFLEKRYST-----------------TGKVIRLET 128 (344) Q Consensus 90 ------n--p~~~----------------~~~~~~~~~d~ll~Gnay~~~~r~~-----------------~G~~~~L~p 128 (344) | +... +.-++..+..--+||-+.+++.-.+ .|....|.. T Consensus 155 g~~~~~~~~~~~d~dqi~~L~~e~erl~V~~~l~eai~~aRlfGGa~~~i~I~gdd~~l~~PL~~~~~~I~kGslKGL~V 234 (698) T protein:vir:10 155 GLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRV 234 (698) T ss_pred cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceEEEEEeecCccccccccccccccccCccceeeee Confidence 0 0000 1111222222236777765553222 234445777 Q ss_pred eCcceeeccccC-----------ceeEEEcCCceEEEEecccEEEecCCCC------CCCcccccchhhhHHHHHHHHHH Q lcl|Aclame:pro 129 SPAKYTRRGVEE-----------DVYWWVPSFNEPTAFAPGSVFHLLEPDI------NQELYGLPEYLSALNSAWLNESA 191 (344) Q Consensus 129 l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~eIih~~~~~~------~~~~~G~sp~~~~~~~i~~~~~a 191 (344) +++.++.+.... -.||++.+. .+...-++.+..... .-.+.|+|-.+.+...+.....+ T Consensus 235 iDp~~vtP~~~n~~dP~spdfgkP~~y~V~G~----~IH~SRL~~~vg~pvpd~LKp~y~f~G~Sv~q~~~e~V~~~~rT 310 (698) T protein:vir:10 235 VEPYWVTPNNYNSINPVADDFYKPSTWWMIGS----EVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRT 310 (698) T ss_pred ecccccccchhhhccchhhccCCCceEEEecc----eecceeEEEecCCCchhhhcchhccCCccHHHHHHHHHHHHHHH Confidence 888777654321 124555422 233444433332211 11346999998888887776665 Q ss_pred HHHHHHHHHccCCCceEEEec-CCCCCHHHHHHHHHHH---HHhhcccccccccccCCCCccccceeeeccCChhHHHHH Q lcl|Aclame:pro 192 TLFRRKYYENGAHAGYIMYVT-DAVQDRNDIEMLRENM---VKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFF 267 (344) Q Consensus 192 ~~~~~~~f~Ng~~p~gil~~~-~~~~~~e~~~~l~~~~---~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~ 267 (344) ........+.- +-.++. +. -..++......+..++ +.++ +|.| ++++.. +.-+|...+.+-. .+- T Consensus 311 ~~~v~~Li~~~-~~~~l~-~dla~aL~~g~~~~l~~R~eli~~~R--sn~G-~~llDk----~~Eefeq~st~lS--GLd 379 (698) T protein:vir:10 311 RQSVSDIVKQF-SVSGIL-MDLAQALTPGANVDLSMRAELINRYR--DNRN-ILFLDK----ATEEFFQFNTPLS--GLD 379 (698) T ss_pred hhhHHHHHHHh-hHHHHH-HHHHHhcCChhhHHHHHHHHHHHHhc--Cccc-eEEEec----CCcceEEEecCcC--CHH Confidence 55555554432 222221 10 0111222222233333 3333 3444 444431 2234444443222 233 Q ss_pred HHHHhhHHHHHHHhcCChH-HhccccccccccccHHHHHHHHHH-------HHHHHHHHHHHH-HHHhhCccceeccccc Q lcl|Aclame:pro 268 NIKKASAADLLDAHRIPFQ-LMGGKPENVGSLGDIEKVAKVFVR-------NELIPLQDRIRE-INGWIGQEVIRFKNYS 338 (344) Q Consensus 268 e~~~~~~~~I~~~fgVPp~-llG~~~~~~~~~~n~e~~~~~f~~-------~~l~P~~~~ie~-ln~~L~~~~irf~~y~ 338 (344) ++.....+.||.+-+||.. |+|..+.+= .++-|.-.+.||. ..|+|.++++-+ |-.....++ . .+.. T Consensus 380 dVi~qf~q~VAgaa~IPltkLfGqSPkGl--NATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~i-d-p~i~ 455 (698) T protein:vir:10 380 ALQAQAQEQMSAVSHIPLIKLLGITPTGL--NASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAV-D-PSIK 455 (698) T ss_pred HHHHHHHHHHHhhhcCchhhhhccCCccc--CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-C-Ccce Confidence 3444556789999999986 568766432 1344545555554 467777776554 333332222 1 1233 Q ss_pred cccCCC Q lcl|Aclame:pro 339 LDTDNG 344 (344) Q Consensus 339 l~~d~g 344 (344) ++|..= T Consensus 456 ~~fnPL 461 (698) T protein:vir:10 456 WQWNAL 461 (698) T ss_pred EEeCCC Confidence 333322 No 147 >protein:vir:7768 Length: 484 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817602;genbank:gi:29566032;genbank:GeneID:1259226 Probab=95.05 E-value=0.0029 Score=34.52 Aligned_cols=305 Identities=11% Similarity=0.019 Sum_probs=110.0 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhh-----hccchhhh--ccccH------HHHHHHHh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVEC-----ISNGRWYE--PPVSF------TGLAKSLR 67 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~-----~~~~~~~~--~p~~~------~~l~~~~~ 67 (344) ||.-=+.-... +|+-. ...+.+++.. ....+||. .++.- ..+.++.. T Consensus 1 ~~~~~~~~~~~------------------~~~~~--~~~l~~~~~~~~~rl~~l~~Yy~G~~~i~~~~~~~~~~~~~~~~ 60 (484) T protein:vir:77 1 MTSPLQKQENV------------------DPEKA--REEMLNLFTERTQDLGDNTAYYESERRPDAVGVTVPQQMQKLLA 60 (484) T ss_pred CCCcccccCCC------------------CHHHH--HHHHHHHHHHHHHHHHHHHHHHhccccchhcccccchhHHhhhh Confidence 22211111110 11100 0011221111 01123332 11110 11111111 Q ss_pred hhhhhhhhhhhcchhhHHhhhcCCCCC-------------------HHHHHHHHHHHHhcCCceEEEeeCCCCce----- Q lcl|Aclame:pro 68 AAVHHSSPIYVKRNILASTFIPHPWLS-------------------QQDFSRFVLDFLVFGNAFLEKRYSTTGKV----- 123 (344) Q Consensus 68 ~~~~~~~~i~~k~n~~~~~~~pnp~~~-------------------~~~~~~~~~d~ll~Gnay~~~~r~~~G~~----- 123 (344) ...+.+-++...... ..++++.. ......+..+.+.+|.||+.+.++..|.+ T Consensus 61 ~~n~~~~ivd~~~~~----l~~~g~~~~~~~~~~~~l~~i~~~N~~d~~~~~~~~~a~~~G~a~~~v~~~~~~~~~~~~~ 136 (484) T protein:vir:77 61 HVGYPRLYIDAIAAR----QELEGFRLGGADKADEQLWDWWQANDLDIESTLGHTDSLVHGRSYITISKPDPNIDPGVDP 136 (484) T ss_pred hcCcHHHHHHHHHhh----hccCceecCCcchhHHHHHHHHHhcCHhHHHHHHHHHHhhcCceEEEEecCCCCccccccc Confidence 122222222211111 11121110 11233456688999999999998877753 Q ss_pred --EEEEEeCcceeeccccCc--------eeEEEc---------------------CCceEE-------EEecccEEEecC Q lcl|Aclame:pro 124 --IRLETSPAKYTRRGVEED--------VYWWVP---------------------SFNEPT-------AFAPGSVFHLLE 165 (344) Q Consensus 124 --~~L~pl~~~~~~~~~~~~--------~~~~~~---------------------~~~~~~-------~~~~~eIih~~~ 165 (344) ..|.+++|..+....+.. .+|... .++... .+..=.|+|+.+ T Consensus 137 ~~~~i~~~~p~~~~~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~N 216 (484) T protein:vir:77 137 EVPIIRVEPPTNLYAQIDPRTRQVMRAIRAIEDEEGNEVIGATLYLPNNTVIWNREDGQWVQVANVAHNLEMVPVIPIPN 216 (484) T ss_pred ccceEEEeccceeEEEecCCCCceEEEEEEEEeecCCcEEEEEEEecCeEEEEEecCCceEeeccccCCCCCcceEEecc Confidence 246667776554332211 011111 111100 011113566664 Q ss_pred CCCCCCcccccchhh----hHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHH--HHHHHHHhhccccccc Q lcl|Aclame:pro 166 PDINQELYGLPEYLS----ALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEM--LRENMVKSKGRNNFKN 239 (344) Q Consensus 166 ~~~~~~~~G~sp~~~----~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~--l~~~~~~~~g~~n~~~ 239 (344) ..-..+..|.|.+.- +..++....+-..-...|| +.|--++ .+...++...+. -...|+.. .+. T Consensus 217 ~~~~~~~~G~s~i~~~v~~L~Da~~~~~s~~~~~~~~~---a~p~~~i--~G~~~~~~~~~~~~~~~~~~~~-----~~~ 286 (484) T protein:vir:77 217 RTRLSDLYGTTEITPELRSVTDAAARTLMLMQATAELM---GVPQRLL--FGVKGEELGVDPETGQTLFDAY-----LAR 286 (484) T ss_pred ccccCccCCcccchHHHHHHHHHHHHHHHHHHHHHHhh---hhhHHHH--hCCCcchhcccccccchhhhhh-----hhh Confidence 332345578876643 3333332222222223333 3343333 232222211111 11122221 123 Q ss_pred ccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHH------HH Q lcl|Aclame:pro 240 LFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRN------EL 313 (344) Q Consensus 240 ~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~------~l 313 (344) ++.+. .++.++..+...+-+ -|++..+.....|+++=++|++.+|....+.+++..+......+... .. T Consensus 287 ~~~~~----~~~~~~~q~~~~~~e-~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka~~k~~~f 361 (484) T protein:vir:77 287 ILAFE----DHESKAQQFSAAELR-NFVDALDALDRKAAAYTGLPPYYLSFSSENPASAEAIRSSESRLVKTVERKNKIF 361 (484) T ss_pred hcccC----CCCceeEeecCCChH-HHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHHHHHHHHHHHHHHHH Confidence 33332 234566666544322 38888888888899999999999986543322221111111111000 00 Q ss_pred HHHHHHHHHHH-HhhCccceec--cccccccCCC Q lcl|Aclame:pro 314 IPLQDRIREIN-GWIGQEVIRF--KNYSLDTDNG 344 (344) Q Consensus 314 ~P~~~~ie~ln-~~L~~~~irf--~~y~l~~d~g 344 (344) .+-++++..+. ...+..-... ...++.|.+. T Consensus 362 ~~~l~~~~~l~~~~~~~~~~~~~~~~i~v~w~~~ 395 (484) T protein:vir:77 362 GGAWEQAMRVAYKVMNGGDIPPEYYRMESIWRDP 395 (484) T ss_pred HHHHHHHHHHHHHHhCCCCcccccccceEEecCC Confidence 11111111110 0011110111 1123334333 No 148 >protein:vir:99916 Length: 504 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655520;genbank:gi:109392290;genbank:GeneID:4157085 Probab=94.73 E-value=0.0036 Score=33.96 Aligned_cols=307 Identities=10% Similarity=0.011 Sum_probs=111.0 Q ss_pred CCCCCCCCC-Ccchh-hccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTP-QPAAK-TMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYV 78 (344) Q Consensus 1 m~~~~~~~~-~~~~~-~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~ 78 (344) |.++..+.. .-..- .--.....+.-+.-.-| . .+- .+.... .| +...+..++..+..+.+-.. .. T Consensus 29 L~~~~~~~~~r~~~l~~YY~G~~~i~~~~~~~p-----~-~~~-~~~~v~--n~--~~~iVd~~a~rl~~~Gf~~~--d~ 95 (504) T protein:vir:99 29 LYQQLVDRTPRNLLRASFYDGKYAIRQIGNLIP-----P-EYL-RTATVL--GW--SAKAVDTLARRCNLESFVWP--DG 95 (504) T ss_pred HHHHHHHHhHHHHHHHHHHhccccchhcccccc-----H-HHH-HHhhcc--Cc--HHHHHHHHHhhhccceeeCC--CC Confidence 111000000 00000 00000000000000000 0 000 000000 11 11111223332222222100 00 Q ss_pred cchh--hHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceE-EEEEeCcceeeccccCce--------eEEEc Q lcl|Aclame:pro 79 KRNI--LASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVI-RLETSPAKYTRRGVEEDV--------YWWVP 147 (344) Q Consensus 79 k~n~--~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~-~L~pl~~~~~~~~~~~~~--------~~~~~ 147 (344) .... +-..+.-|.+ ......+..+.+.+|.||+.+..+..|++. .+.+++|..+....++.. ++... T Consensus 96 ~~~~~~l~~i~~~N~l--d~~~~~~~~~a~iyG~af~~v~~~~d~~~~~~I~~~sP~~~~~iyD~~~~~~~~a~~~~~~d 173 (504) T protein:vir:99 96 DYGSIGGPDVWDENFF--ATKANNAMVSSLIHGPAFLINTEGGAGEPDSLIHVKSAMQATGEWNSRRNAMDSLLSITSRD 173 (504) T ss_pred ChhhHHHHHHHHhcCh--hhHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEeccceeEEEEeCCCCceeEEEEEEEec Confidence 0000 1122333433 123456778899999999999988888764 577788876654332210 11111 Q ss_pred CCceEE---EEeccc------------------------EEEecCCCCCCCcccccchh----hhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 148 SFNEPT---AFAPGS------------------------VFHLLEPDINQELYGLPEYL----SALNSAWLNESATLFRR 196 (344) Q Consensus 148 ~~~~~~---~~~~~e------------------------Iih~~~~~~~~~~~G~sp~~----~~~~~i~~~~~a~~~~~ 196 (344) .+|... .+.++. |+++.+..-.+..+|.|.+. .+..++.-...-..-.. T Consensus 174 ~~g~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~gvPvV~~~n~~~~~~~~G~sei~~~v~~l~Da~~~~~~~~~~~~ 253 (504) T protein:vir:99 174 AEGHPTGIALYEDGVTVTADMDDDGDWHADVRTHKLGVPVEVLPYKPREDRPLGSSRITRPVMSLQQRALKGCIRMDGHA 253 (504) T ss_pred CCCeEEEEEEEcCCcEEEEEEcCCceeeeccccCCCCcceEEecccccCccccCcccchhhHHHHHHHHHHHHHHHHHHH Confidence 121111 122222 45554332224567777653 23332222222222223 Q ss_pred HHHHccCCCceEEEecCCCCCH---H---HHHHHHHHHHHhhcccccccccccCCCCc-----cccceeeeccCChhHHH Q lcl|Aclame:pro 197 KYYENGAHAGYIMYVTDAVQDR---N---DIEMLRENMVKSKGRNNFKNLFLYAPQGK-----ADGIKIIPLSEVATKDD 265 (344) Q Consensus 197 ~~f~Ng~~p~gil~~~~~~~~~---e---~~~~l~~~~~~~~g~~n~~~~~vl~~~~~-----~~g~~~~pl~~~~~d~q 265 (344) .||.+ |--+ +.+..+++ + ....++.... +++.+..+.+ ....++..+....- .. T Consensus 254 e~~a~---p~r~--i~G~~~~~~~~~d~~~~~~~~~~~~---------~i~~~~~~~~~~~~~~~~~~~~q~~~~~l-~~ 318 (504) T protein:vir:99 254 DVYSF---PQLI--LLGADAKNFRNKDGSMKPAWQIALA---------RVFALPDDEDEPDAARARADVKQFPASSP-QP 318 (504) T ss_pred HHhcc---hhhh--hccCCccccccccccccchhhhhhh---------hhhcCCCccccccccCccceeeecCCCCh-HH Confidence 33333 2222 22221111 1 1122222221 2222221110 12344555543322 23 Q ss_pred HHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc-------------- Q lcl|Aclame:pro 266 FFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIREINGWIGQEV-------------- 331 (344) Q Consensus 266 f~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~ln~~L~~~~-------------- 331 (344) |++..+..+..|+++=++|++.+|+.... +.++.+.+. + ...++....+..+++++.-. T Consensus 319 ~~~~l~~~i~~~a~~t~~P~~~lG~~~~~--n~sSa~Ai~--~---~~~~L~~ka~~k~~~f~~~l~~~~rla~~~~~~~ 391 (504) T protein:vir:99 319 HIEMLEQIAMMFSGETSIPVESLGFSNRA--NPTSADAYI--A---SREDLIAEAEGATDDWSPAFRRSMIRALAIKNGL 391 (504) T ss_pred HHHHHHHHHHHHHhhhCCCHHHhcccccc--cccHHHHHH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC Confidence 89999999999999999999999986431 122222221 1 22222222222222211110 Q ss_pred --eecccc--ccccCCC Q lcl|Aclame:pro 332 --IRFKNY--SLDTDNG 344 (344) Q Consensus 332 --irf~~y--~l~~d~g 344 (344) +....+ +..|.+. T Consensus 392 ~~~~~~~~~~~v~w~d~ 408 (504) T protein:vir:99 392 DRIPPEWKTIDSKFRSP 408 (504) T ss_pred CccccccccceeEecCC Confidence 011111 2223333 No 149 >protein:vir:8654 Length: 629 # NCBI annotation: gp12 # Family: family:all:2798 # MgeID: mge:156 # MgeName: Rosebush # Cross-refs: genbank:acc:NP_817773;genbank:gi:29566205;genbank:GeneID:1259465 Probab=94.33 E-value=0.0047 Score=33.33 Aligned_cols=334 Identities=13% Similarity=0.122 Sum_probs=140.7 Q ss_pred CC--------CCCCCCCCcc-hhhcccccccee--EEEcCCceeccCcc-hhhhhhhhhc-------cchhhhccccHHH Q lcl|Aclame:pro 1 MS--------KKKGKTPQPA-AKTMTASAPKME--AFTFGEPVPVLDRR-DILDYVECIS-------NGRWYEPPVSFTG 61 (344) Q Consensus 1 m~--------~~~~~~~~~~-~~~~~~~~~~~~--~f~~~~p~~~~~~~-~~~~~~~~~~-------~~~~~~~p~~~~~ 61 (344) |. |.|. .+..+ ..+.++++..+. .-+|-.-..+...+ |=.+..++.+ --.|..+.++... T Consensus 1 ma~~~lr~~rrpk~-~p~~~r~~al~aas~~i~~p~~~~~ks~~~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~Sr~r 79 (629) T protein:vir:86 1 MAPTSLRIVRRPKS-EPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVR 79 (629) T ss_pred CCccceeeeecCCC-CChhhhhhhhhhhhhccccccchhhhhcCCCchhhhhHHHHHHHHhhhhHHHHhhhhhhhhceee Confidence 32 2222 11111 112233322221 01110000011111 1111111111 1113222222211 Q ss_pred HHHHHhh--hhhh---hhhhh------hcchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEee------CCCCceE Q lcl|Aclame:pro 62 LAKSLRA--AVHH---SSPIY------VKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRY------STTGKVI 124 (344) Q Consensus 62 l~~~~~~--~~~~---~~~i~------~k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r------~~~G~~~ 124 (344) | +.+ .+.. -..+. .+...+....-..++.-.+.++.++.++-+-|.+|+-+.. +..|.++ T Consensus 80 L---~as~idpDtg~ptg~i~e~~~~~~~v~~~v~~i~gG~lgqa~lLkr~~~~ltV~GE~wiv~~~~~~~~~d~~~~~~ 156 (629) T protein:vir:86 80 L---IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPV 156 (629) T ss_pred e---EeeeecCCCCCCccccCCCchhHHHHHHHHHhhcCChhhHHHHHHHHHhheecccceEEEEeecCCCccCCCCcch Confidence 1 000 0000 00011 0111111111222333345678888899999999997763 2223333 Q ss_pred EE-EEeCcceeeccccCceeEEEcCCceEEEEec-ccEEEec--CCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 125 RL-ETSPAKYTRRGVEEDVYWWVPSFNEPTAFAP-GSVFHLL--EPDINQELYGLPEYLSALNSAWLNESATLFRRKYYE 200 (344) Q Consensus 125 ~L-~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~eIih~~--~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~ 200 (344) .- +.+.+..+....+ +.-...+. |..++|.. .+++ +| .++|..-.+--||..+++.++.--.-.++..++.-+ T Consensus 157 ~eW~~vt~~ei~~~~~-~~~i~lP~-g~~~e~~~~~d~l-~RiW~P~Prr~~e~DSpvra~l~~l~Ei~~lt~~i~aaak 233 (629) T protein:vir:86 157 PEWLALTPEEVRASEK-KTIIELPT-GDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASK 233 (629) T ss_pred hhheeechHHhhhccC-ceeeEcCC-CCcceeeCCCceE-EEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHH Confidence 32 2333333332222 22233333 44455543 3444 55 567777778899999999988877777777666666 Q ss_pred ccCCCceEEEecCCC-C--------------------CHHHHHHHHHHHH----Hh---hcccccccccccC-CCCcccc Q lcl|Aclame:pro 201 NGAHAGYIMYVTDAV-Q--------------------DRNDIEMLRENMV----KS---KGRNNFKNLFLYA-PQGKADG 251 (344) Q Consensus 201 Ng~~p~gil~~~~~~-~--------------------~~e~~~~l~~~~~----~~---~g~~n~~~~~vl~-~~~~~~g 251 (344) .-..-.|||.++... + ..-..+.|.+.|- .. .+...+--++|+. |+---.+ T Consensus 234 SRL~gnGvlflP~e~slP~~~~p~~~n~pg~~~p~~~~~pa~~~l~~~l~q~a~tAi~De~S~aA~vPiia~~P~E~i~~ 313 (629) T protein:vir:86 234 SRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKN 313 (629) T ss_pred HHHhhCceeeeccCcccCccCCCCCCCCCCcccccccccchHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechHHhcC Confidence 666666676554321 0 0112334444442 22 1222233344433 3322344 Q ss_pred ceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChH-HhccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HH-Hhh- Q lcl|Aclame:pro 252 IKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQ-LMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-IN-GWI- 327 (344) Q Consensus 252 ~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~-llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln-~~L- 327 (344) ++...++..- +..-+.+|+-.+..||...-|||. ++|+..+.+=|. +=+....=++.-|.|.+..|.+ |. .+| T Consensus 314 i~hlkf~~ei-~e~aiktR~daI~RlA~glDippE~LLGlGsd~NHWs--AWqI~dedvrlHI~P~l~~ic~AlT~~~Lr 390 (629) T protein:vir:86 314 VTHLKFDNQV-TEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWS--AWQIGDEDVRLHILPPVEMLCEAITNQVLR 390 (629) T ss_pred eeEEeecCch-hHHHHhhHHHHHHHHHhccCCchhhheeccCCccceE--EEEecccceeeecchHHHHHHHHHHhhHHH Confidence 5555544322 344678899999999999999997 668732222121 1111111223335555554432 22 122 Q ss_pred ------Cc----cceeccccccccCCC Q lcl|Aclame:pro 328 ------GQ----EVIRFKNYSLDTDNG 344 (344) Q Consensus 328 ------~~----~~irf~~y~l~~d~g 344 (344) |- .++=|+...|-.+.- T Consensus 391 p~Le~eGiDp~kYvvW~DaS~Lt~dPd 417 (629) T protein:vir:86 391 TVLMREGIDPNAYVVWHDASQLTVDPD 417 (629) T ss_pred HHHHHhCCCHHHhEeeecCcccccCCC Confidence 11 112223223222222 No 150 >protein:vir:3609 Length: 452 # NCBI annotation: ORF32 # Family: family:all:125 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112695;genbank:gi:13786563;genbank:GeneID:921063 Probab=93.82 E-value=0.0063 Score=32.67 Aligned_cols=285 Identities=9% Similarity=0.006 Sum_probs=112.4 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) +.++.+. ...+ ..++ ...|-. .+.+- ..+-.+..|+.+. +-..+. T Consensus 50 ~~~~~~~-~~~~-------~~ki-~~n~~~--------~ivd~----~~~~l~g~~~~~~--------------~~d~~~ 94 (452) T protein:vir:36 50 DDEPAKD-SWKP-------DNRL-AVNFTK--------YIVDT----FTGYFNGIPVKKS--------------HSDKEI 94 (452) T ss_pred ccCcccc-ccCc-------ccee-ecchHH--------HHHHH----HhhhhcccCceee--------------cCChhH Confidence 2211111 0000 0000 000000 00000 0000111121110 000011 Q ss_pred hhhHH-hhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---------eeEEEcCCc Q lcl|Aclame:pro 81 NILAS-TFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPSFN 150 (344) Q Consensus 81 n~~~~-~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~~~~~~~~ 150 (344) +..+. .+..|.+ ......++.+.+.+|.+|..+..+..|++ .+..++|..+.+..+.. ++|.-.... T Consensus 95 ~~~l~~~~~~n~~--~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~v~d~~~~~~~~~~i~~~~~~~~~ 171 (452) T protein:vir:36 95 LTKLQEFDNLNDM--EDEESELAKMACIYGRAFEFLYQDEDTQT-NVVYNSPENMFMVYDDTVKQEPLFAVRYGVDEDKK 171 (452) T ss_pred HHHHHHHHhhcCh--hHHHHHHHHHHHhcCeEEEEEEecCCCee-EEEEEcccceEEEEcCCCCCceEEEEEEEEecCce Confidence 11111 1222221 23456677889999999999988888864 45556665543322111 011101111 Q ss_pred eE-EEEecc-------------------------cEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCC Q lcl|Aclame:pro 151 EP-TAFAPG-------------------------SVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAH 204 (344) Q Consensus 151 ~~-~~~~~~-------------------------eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~ 204 (344) .. ..+.++ .|+++++ .-.|.|.+......++.-..+..-..+.+...+. T Consensus 172 ~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----~~~g~sd~e~v~~liDa~d~~~s~~~~~~~~~~~ 246 (452) T protein:vir:36 172 LQGEVYTLLETIKISGENDEISFGEGTYNPYPDLPVVEFYF-----NEERMSIFESVISLVNAFNKAISEKANDVDYFSD 246 (452) T ss_pred EEEEEEecCeEEEEEEcCCceEEecceeccCCcccEEEecC-----CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcC Confidence 00 011112 2333332 1246666665554444443333333444445555 Q ss_pred CceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCC Q lcl|Aclame:pro 205 AGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIP 284 (344) Q Consensus 205 p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVP 284 (344) |-.+ +++..++++....++. .+++.+.+++...+.++.-+........+.+..+...+.|...-++| T Consensus 247 p~~~--~~g~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p 313 (452) T protein:vir:36 247 QYLT--FLGAAVEEEDLKNIRS-----------NRVINYYADGEGKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMVA 313 (452) T ss_pred ceeE--eecCCcCchhhhhhhh-----------cceEEecCCCCccCCcceeEeecCCHHHHHHHHHHHHHHHHHHhCcc Confidence 6444 4565555544333221 12333333333333334434433445667777888889999999998 Q ss_pred hHHhccccccccccccHHH----------HHHHHHHHHHHHHHHHHHHHHHhhCccceeccccccccCCC Q lcl|Aclame:pro 285 FQLMGGKPENVGSLGDIEK----------VAKVFVRNELIPLQDRIREINGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 285 p~llG~~~~~~~~~~n~e~----------~~~~f~~~~l~P~~~~ie~ln~~L~~~~irf~~y~l~~d~g 344 (344) ..-.+-. ++.++.-++- ..+..+...|..+++.+..+....+.. ..+..-.+.|... T Consensus 314 ~~~~~~~--gn~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~-~~~~~i~i~f~~~ 380 (452) T protein:vir:36 314 NISDESF--GSSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLFCELSTNVSNK-DSWKDIEYTFTRN 380 (452) T ss_pred ccCcccc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-cccccceEEeCCC Confidence 5322111 1111110100 111233333444443333332222222 1233345556666 No 151 >protein:vir:99088 Length: 629 # NCBI annotation: gp12 # Family: family:all:2798 # MgeID: mge:1608 # MgeName: Qyrzula # Cross-refs: genbank:acc:YP_655692;genbank:gi:109521770;genbank:GeneID:4157810 Probab=93.69 E-value=0.0067 Score=32.51 Aligned_cols=334 Identities=13% Similarity=0.120 Sum_probs=140.3 Q ss_pred CC--------CCCCCCCCcc-hhhcccccccee--EEEcCCceeccCcc-hhhhhhhhhc-------cchhhhccccHHH Q lcl|Aclame:pro 1 MS--------KKKGKTPQPA-AKTMTASAPKME--AFTFGEPVPVLDRR-DILDYVECIS-------NGRWYEPPVSFTG 61 (344) Q Consensus 1 m~--------~~~~~~~~~~-~~~~~~~~~~~~--~f~~~~p~~~~~~~-~~~~~~~~~~-------~~~~~~~p~~~~~ 61 (344) |. |.|. .+..+ ..+.++++..+. .-+|-.-..+...+ |=.+..++.. --.|..+.++... T Consensus 1 ma~~~lr~~rrpk~-~p~~~r~~al~aas~~i~~p~~~~~ks~~~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~Sr~r 79 (629) T protein:vir:99 1 MAPTSLRIVRRPKS-EPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQDDAWKAYDAVGELRYYVGWRSSSASRVR 79 (629) T ss_pred CCccceeeeecCCC-CChhhhhhhhhhhhhcccccchhhhhhcCCCchhhhhHHHHHHHHhhhhHHHHhhhhhhhhceee Confidence 32 2222 11111 112233322221 01110000011111 1111111111 1113322222211 Q ss_pred HHHHHhh--hhhh---hhhhh------hcchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEee------CCCCceE Q lcl|Aclame:pro 62 LAKSLRA--AVHH---SSPIY------VKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRY------STTGKVI 124 (344) Q Consensus 62 l~~~~~~--~~~~---~~~i~------~k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r------~~~G~~~ 124 (344) | +.+ .+.. -..+. .+...+....-..++.-.+.++.++.++-+-|.+|+.+.. +..|.++ T Consensus 80 L---~as~idpDtg~ptg~i~e~~~~~~~v~~~v~~i~gG~lgqa~lLkr~~~~ltV~GE~wiv~~~~~~~~~d~~~~~~ 156 (629) T protein:vir:99 80 L---IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPV 156 (629) T ss_pred e---EeeeecCCCCCCccccCCCchhHHHHHHHHHhhcCChhhHHHHHHHHHhheecccceEEEEeecCCCccCCCCcch Confidence 1 000 0000 00011 0111111111222333345678888899999999997763 2223333 Q ss_pred EE-EEeCcceeeccccCceeEEEcCCceEEEEe-cccEEEec--CCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 125 RL-ETSPAKYTRRGVEEDVYWWVPSFNEPTAFA-PGSVFHLL--EPDINQELYGLPEYLSALNSAWLNESATLFRRKYYE 200 (344) Q Consensus 125 ~L-~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~eIih~~--~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~ 200 (344) .- +.+.+..+....+ +.-...+. |..++|. ..+++ +| .++|..-.+--||..+++.++.--.-.++..++.-+ T Consensus 157 ~eW~~vt~~ei~~~~~-~~~i~lP~-g~~~e~~~~~d~l-~RiW~P~Prr~~e~DSpvra~l~~l~Ei~~lt~~i~aaak 233 (629) T protein:vir:99 157 PEWLALTPEEVRASEK-KTIIELPT-GDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASK 233 (629) T ss_pred hhheeechHHhhhccC-ceeEEcCC-CCccceeCCCceE-EEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHH Confidence 32 2233333332222 22233333 3444443 34444 44 567777778899999999988887777777666666 Q ss_pred ccCCCceEEEecCCC-C--------------------CHHHHHHHHHHHH----Hh---hcccccccccccC-CCCcccc Q lcl|Aclame:pro 201 NGAHAGYIMYVTDAV-Q--------------------DRNDIEMLRENMV----KS---KGRNNFKNLFLYA-PQGKADG 251 (344) Q Consensus 201 Ng~~p~gil~~~~~~-~--------------------~~e~~~~l~~~~~----~~---~g~~n~~~~~vl~-~~~~~~g 251 (344) .-..-.|||.++... + ..-..+.|.+.|- .. .+...+--++|+. |+---.+ T Consensus 234 SRL~gnGvlflP~e~slP~~~~p~~~n~pg~~~p~~~~~pa~~~l~~~l~q~a~tAi~De~S~aA~vPiia~~P~E~i~~ 313 (629) T protein:vir:99 234 SRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKN 313 (629) T ss_pred HHHhhCceeEeccCcccCccCCCCCCCCCCcccccccccchHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechHHhcC Confidence 666666676654321 0 0112334444442 12 1222233344433 3322344 Q ss_pred ceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChH-HhccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HH-Hhh- Q lcl|Aclame:pro 252 IKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQ-LMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-IN-GWI- 327 (344) Q Consensus 252 ~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~-llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln-~~L- 327 (344) ++...++..- +..-+.+|+-.+..||...-|||. ++|+..+.+=|. +=+....=++.-|.|.+..|.+ |. .+| T Consensus 314 i~hlkf~~ei-~e~aiktR~daI~RlA~glDippE~LLGlGsd~NHWs--AWqI~dedvrlHI~P~l~~ic~AlT~~~Lr 390 (629) T protein:vir:99 314 VTHLKFDNQV-TEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWS--AWQIGDEDVRLHILPPVEMLCEAITNQVLR 390 (629) T ss_pred eeEEeecCch-hHHHHhhHHHHHHHHHhccCCchhhheeccCCccceE--EEEecccceeeecchhHHHHHHHHHhhHHH Confidence 5555544322 344678899999999999999997 668732222121 1111111223335555554432 22 122 Q ss_pred ------Cc----cceeccccccccCCC Q lcl|Aclame:pro 328 ------GQ----EVIRFKNYSLDTDNG 344 (344) Q Consensus 328 ------~~----~~irf~~y~l~~d~g 344 (344) |- .++=|+...|-.+.- T Consensus 391 p~Le~eGiDp~kYvvW~DaS~Lt~dPd 417 (629) T protein:vir:99 391 TVLMREGIDPNAYVVWHDASQLTVDPD 417 (629) T ss_pred HHHHHhCCCHHHhEeeecCcccccCCC Confidence 11 112223222222222 No 152 >protein:vir:78589 Length: 695 # NCBI annotation: NUDIX hydrolase # Family: family:all:297 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294854;genbank:gi:149882917;genbank:GeneID:5291060 Probab=93.48 E-value=0.0074 Score=32.26 Aligned_cols=318 Identities=15% Similarity=0.152 Sum_probs=122.7 Q ss_pred CCCCCCCCCCcch---------hhc-cccccceeEEEcCCceec-cCcch------------------hhhhhhhh-cc- Q lcl|Aclame:pro 1 MSKKKGKTPQPAA---------KTM-TASAPKMEAFTFGEPVPV-LDRRD------------------ILDYVECI-SN- 49 (344) Q Consensus 1 m~~~~~~~~~~~~---------~~~-~~~~~~~~~f~~~~p~~~-~~~~~------------------~~~~~~~~-~~- 49 (344) ||++..|+++.-+ ++. -+++.-+..-+-..|+|. |.++. +...+++. .+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (695) T protein:vir:78 1 MSRRNAKKRTQLAHTGRRPEVAKAAALAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNY 80 (695) T ss_pred CCccchhhhhhhhhcCCCcchhhhhhhhhhhhhhhhccccccchhhcccccccccccccccCCCcccccceeceeccccC Confidence 9988755443221 110 000000111112222222 11111 11111110 00 Q ss_pred chhhhcc--------------ccHH---------HHHHHHhhhhhhhhhhhhcchhhHHhh--hc--------------- Q lcl|Aclame:pro 50 GRWYEPP--------------VSFT---------GLAKSLRAAVHHSSPIYVKRNILASTF--IP--------------- 89 (344) Q Consensus 50 ~~~~~~p--------------~~~~---------~l~~~~~~~~~~~~~i~~k~n~~~~~~--~p--------------- 89 (344) +.+...+ ++++ .|+.+..... +.++..+.... ++ T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~~la~laQ~~e------yr~~~~~ia~e~~R~w~~~~~~~~e~~~~~ 154 (695) T protein:vir:78 81 TPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPE------YRAMHEVLADECIRTWGEAIGGTKEKADTS 154 (695) T ss_pred CccccchhhhhhcccccccccchhhhccCcchHHHHHHHhhccc------hhhHHHHHHHHhhcccceeccccchhhhhh Confidence 0010011 1110 0111111000 00111110000 00 Q ss_pred ------C--CCCC----------------HHHHHHHHHHHHhcCCceEEEeeCC-----------------CCceEEEEE Q lcl|Aclame:pro 90 ------H--PWLS----------------QQDFSRFVLDFLVFGNAFLEKRYST-----------------TGKVIRLET 128 (344) Q Consensus 90 ------n--p~~~----------------~~~~~~~~~d~ll~Gnay~~~~r~~-----------------~G~~~~L~p 128 (344) | +... +.-++..+..--+||-+.+++.-.+ .|....|.. T Consensus 155 g~~~~~~~~~~~d~dqi~~L~~e~erL~V~~~l~eaik~aRlfGGa~~~i~i~gdd~~l~~PL~~~~~~I~kGslKGl~V 234 (695) T protein:vir:78 155 GLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRV 234 (695) T ss_pred cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccceEEEEEeccCccccccccccccccccCcceeeeEe Confidence 0 0000 1112222222336777765553322 234445777 Q ss_pred eCcceeeccccC-----------ceeEEEcCCceEEEEecccEEEecCCCC------CCCcccccchhhhHHHHHHHHHH Q lcl|Aclame:pro 129 SPAKYTRRGVEE-----------DVYWWVPSFNEPTAFAPGSVFHLLEPDI------NQELYGLPEYLSALNSAWLNESA 191 (344) Q Consensus 129 l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~eIih~~~~~~------~~~~~G~sp~~~~~~~i~~~~~a 191 (344) +++.++.+.... -.||++. |. .+...-++.+..... .-.+.|+|-.+.+...+...... T Consensus 235 iDp~~vtP~~~n~~dP~spdfgkP~~y~V~--G~--kIH~SRL~~f~g~plPd~LKp~y~~~GiSv~q~~~e~V~~~~rT 310 (695) T protein:vir:78 235 VEPYWVTPNNYNSINPVADDFYKPSTWWMI--GT--EVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRT 310 (695) T ss_pred ecccccccchhhhccchhhccCCCceEEEe--ce--EEeeeeEEEecCCCchhhhhcccccCcccHHHHHHHHHHHHHHH Confidence 888777654321 1245553 22 233444433332211 11356999888888777766655 Q ss_pred HHHHHHHHHccCCCceEEEec--CCCCCHHHHHHHH---HHHHHhhcccccccccccCCCCccccceeeeccCChhHHHH Q lcl|Aclame:pro 192 TLFRRKYYENGAHAGYIMYVT--DAVQDRNDIEMLR---ENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDF 266 (344) Q Consensus 192 ~~~~~~~f~Ng~~p~gil~~~--~~~~~~e~~~~l~---~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf 266 (344) ..........- +..++ ++. ....+.... .+. +.++.++ +|.+ ++++.. +.-+|...+.+-. .+ T Consensus 311 ~~~v~~Li~~~-~v~~l-k~dla~~L~~g~~~-~l~~R~eli~~~R--sn~G-~~llDk----~~Eefeq~stslS--GL 378 (695) T protein:vir:78 311 RQSVSDIVKQF-SVSGI-LMDLAQALMPGANV-DLSMRAELINRYR--DNRN-ILFLDK----ATEEFFQFNTPLS--GL 378 (695) T ss_pred HhHHHHHHHhh-hhHHH-HHHHHHhhcChhHH-HHHHHHHHHHHhc--Cccc-eEEEec----CCcceEEEecccC--CH Confidence 55555554432 22222 111 111122222 222 2233443 3444 444431 1233444443222 12 Q ss_pred HHHHHhhHHHHHHHhcCChH-HhccccccccccccHHHHHHHHHH-------HHHHHHHHHHHH-HHHhhCccceecccc Q lcl|Aclame:pro 267 FNIKKASAADLLDAHRIPFQ-LMGGKPENVGSLGDIEKVAKVFVR-------NELIPLQDRIRE-INGWIGQEVIRFKNY 337 (344) Q Consensus 267 ~e~~~~~~~~I~~~fgVPp~-llG~~~~~~~~~~n~e~~~~~f~~-------~~l~P~~~~ie~-ln~~L~~~~irf~~y 337 (344) -++.....+.||.+-+||.. |+|..+.+= .++-|.-.+.||. ..|+|.++++-+ |-......+ . .++ T Consensus 379 ddVi~qf~q~VAgaa~IPltkLfGqSPkGl--NATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~i-d-pdi 454 (695) T protein:vir:78 379 DALQAQAQEQMSAVSHIPLIKLLGITPTGL--NASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAV-D-PSI 454 (695) T ss_pred HHHHHHHHHHHHhhhcCchhhhhccCCccc--cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-C-Ccc Confidence 23344456789999999986 668766432 1344545555554 466777766544 333322222 1 123 Q ss_pred ccccCCC Q lcl|Aclame:pro 338 SLDTDNG 344 (344) Q Consensus 338 ~l~~d~g 344 (344) .++|..= T Consensus 455 ~~~fnPL 461 (695) T protein:vir:78 455 KWQWNAL 461 (695) T ss_pred eEEeCCC Confidence 3344322 No 153 >protein:vir:106491 Length: 646 # NCBI annotation: Pas4 # Family: family:all:2798 # MgeID: mge:1680 # MgeName: phiAsp2 # Cross-refs: genbank:acc:YP_024790;genbank:gi:48697405;genbank:GeneID:2846148 Probab=93.05 E-value=0.009 Score=31.81 Aligned_cols=333 Identities=14% Similarity=0.052 Sum_probs=147.8 Q ss_pred CCCCCCCCCCcch--------hhccccccce------eEEEcCCceeccCcchhhhhhhhhcc-------chhhhccccH Q lcl|Aclame:pro 1 MSKKKGKTPQPAA--------KTMTASAPKM------EAFTFGEPVPVLDRRDILDYVECISN-------GRWYEPPVSF 59 (344) Q Consensus 1 m~~~~~~~~~~~~--------~~~~~~~~~~------~~f~~~~p~~~~~~~~~~~~~~~~~~-------~~~~~~p~~~ 59 (344) |..-|.|-..++. ...+.++..+ ..-+-..+ ...|=.+..++.+. -.|..+.++. T Consensus 1 ~~~~rPk~~p~~p~~~~~arrr~LtaAsa~l~~~~~~~~kt~~~~----~~~WQ~eAW~~~d~vpELry~vgW~~~a~SR 76 (646) T protein:vir:10 1 MALLKPKSAPPEPFGAEVARRIALAGATAQVDLGASSSWKTWKFG----NKDWQTEGWRLYDIIPEHHFLAGRIGDSVAQ 76 (646) T ss_pred CcccCCCCCCCCcccccccchhhhhhccccccCCCcceeecCCCc----chhhhHHHHHHHhhhhhHhhHhhhhhhhhce Confidence 7665555333321 1111111111 00111111 11111111111111 1133332222 Q ss_pred HHHH-HHHhhhhh-hhhhhhhcchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEE---eeCCCCceEEEEEeCccee Q lcl|Aclame:pro 60 TGLA-KSLRAAVH-HSSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEK---RYSTTGKVIRLETSPAKYT 134 (344) Q Consensus 60 ~~l~-~~~~~~~~-~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~---~r~~~G~~~~L~pl~~~~~ 134 (344) ..|. --....+. .+.+-..+...+..........-.+.++.++.++-+-|.+|+.. .....+---.++++....+ T Consensus 77 ~rL~aseiddtG~~tg~v~~~~v~~iv~~~~Gg~~gQ~qlLkr~~~~ltV~GE~wiv~~~~~~~~~~~~~~W~vvt~~Ev 156 (646) T protein:vir:10 77 ARLYVTEVDDTGEETGEVQDERIKRLAAVPLGTGSQRDDNLRLAGLDLAVGGECWIVGEGAATSPEAAEGSWFVVTGSAI 156 (646) T ss_pred eeeeeeeecCCCCCcCccchHHHHHHhhhhccchhhHHHHHHHHHhheecccceEEeeccccCCCCCCccceeeecHHHh Confidence 1110 00000000 00000001000111111111222345788888999999999953 1111121223555555555 Q ss_pred eccccCceeEEEcC----CceEEEEecccEEEec--CCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceE Q lcl|Aclame:pro 135 RRGVEEDVYWWVPS----FNEPTAFAPGSVFHLL--EPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYI 208 (344) Q Consensus 135 ~~~~~~~~~~~~~~----~~~~~~~~~~eIih~~--~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gi 208 (344) .. .++.+-.... ++.....+..+|+ || .++|..-.+--||..+++.++.--.-.++..++.-+.-..-.|| T Consensus 157 ~~--tg~~~~i~~p~~~~g~~~v~~~~~d~l-vRiW~P~Prr~~epDSpvra~l~~l~Ei~~lt~~I~aaakSRL~GnGv 233 (646) T protein:vir:10 157 SR--TGDEIAVRRPQQRGGSKLVLVDGQDIL-IRCWRPHPNDTDQADSFTRSAIVPLREIELLTKREFAELDSRLTGAGI 233 (646) T ss_pred cc--CCCeeeeecCccCCCCCcceecCCceE-EEEecCCcccccCCcchhHHHHHHHHHHHHhhhHhHHHHHHHHhcCce Confidence 33 2222222211 2333334455553 35 56777777889999999999888888888777777777777788 Q ss_pred EEecCCC------CCHHHHHHHHHHH----HHh---hcccccccccccCCCCccc--cceeeeccCChh-HHHHHHHHHh Q lcl|Aclame:pro 209 MYVTDAV------QDRNDIEMLRENM----VKS---KGRNNFKNLFLYAPQGKAD--GIKIIPLSEVAT-KDDFFNIKKA 272 (344) Q Consensus 209 l~~~~~~------~~~e~~~~l~~~~----~~~---~g~~n~~~~~vl~~~~~~~--g~~~~pl~~~~~-d~qf~e~~~~ 272 (344) |.+++.. -++-..+.|.+.| ... .+...+--++|+...+.-. --+++.+..... +..-+.+|+- T Consensus 234 LfvP~e~s~p~~~~~~a~~~~l~~~l~qaa~tAi~De~S~aA~vPiia~~P~E~i~~~~~ik~l~f~~eite~aiktR~d 313 (646) T protein:vir:10 234 MFLPEGVDFPRGEEDPAGLAGFMAYLQRAAAASMADQSRASAMVPIMATIPNEMMEHLDKIKPLTFWSELSAEITPMKDK 313 (646) T ss_pred eeeccccccCCCCCCCcchhHHHHHHHHHHHhhhcCCCCccceeeeEEeeChHHHhhhhcceeeccCchhhHHHhhhHHH Confidence 8876532 1112233333333 222 1233333444443322110 013444444433 3336788999 Q ss_pred hHHHHHHHhcCChH-HhccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HH-Hhh-------Cc-----cceecccc Q lcl|Aclame:pro 273 SAADLLDAHRIPFQ-LMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-IN-GWI-------GQ-----EVIRFKNY 337 (344) Q Consensus 273 ~~~~I~~~fgVPp~-llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln-~~L-------~~-----~~irf~~y 337 (344) .+..||...-|||. ++|+. + ++.=+.=+....=++ -|.|.+..|.+ |. .+| |- .++=|+.. T Consensus 314 aI~RlA~glDIppE~LLGlg-d--~NHWtAWqI~de~vr-HI~P~l~~ic~AlT~~~Lrp~Le~eGi~dp~kyvvW~DaS 389 (646) T protein:vir:10 314 AIARLASSAEIPGEVLTGIG-D--ANHWTAWLISDEGIR-WIRGYLGLIADALTRGFLRRALESMGVTNPERYAFAFDTS 389 (646) T ss_pred HHHHHHhccCCchhheeecc-c--cceeeeeeeccccch-hhhhHHHHHHHHHHhhHHHHHHHHcCCCChhHeEEeecCc Confidence 99999999999997 66774 2 222111122222234 47887777754 43 233 21 11223333 Q ss_pred ccccCCC Q lcl|Aclame:pro 338 SLDTDNG 344 (344) Q Consensus 338 ~l~~d~g 344 (344) .|-.+.- T Consensus 390 ~Lt~~pd 396 (646) T protein:vir:10 390 TLASKPN 396 (646) T ss_pred ccccCCC Confidence 3333332 No 154 >protein:vir:8184 Length: 474 # NCBI annotation: gp4 # Family: family:all:524 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817977;genbank:gi:29566411;genbank:GeneID:2700965 Probab=92.23 E-value=0.012 Score=31.06 Aligned_cols=316 Identities=8% Similarity=-0.013 Sum_probs=108.4 Q ss_pred CCC-----------CCCCCC-Ccchhh-ccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHh Q lcl|Aclame:pro 1 MSK-----------KKGKTP-QPAAKT-MTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLR 67 (344) Q Consensus 1 m~~-----------~~~~~~-~~~~~~-~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~ 67 (344) |.+ +..+.. .-..-. --.....+.-..- ..+. .+ .-+.... .| +...+..++..+. T Consensus 12 l~~~~~~~~~~L~~~~~~~~~~~~~~~~Yy~G~~~~~~~~~-----~~p~-~~-r~~~~v~--nw--~~~~Vd~~a~rl~ 80 (474) T protein:vir:81 12 LSNDENALINGLLAQIENLRWKNLLRTSYYENKRTIQYVGT-----LIPP-QY-FNLGLVL--GW--TGKAVDALARRCN 80 (474) T ss_pred CChhHHHHHHHHHHHHHHHhhHHHHHHHHhccCCChhhccc-----cccH-HH-HHHHhhc--Ch--HHHHHHHHHhhhc Confidence 111 100000 000000 0000000000000 0000 00 0000000 12 1112233333333 Q ss_pred hhhhhhhhhhhcch-hhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCce-EEEEEeCcceeeccccCce--- Q lcl|Aclame:pro 68 AAVHHSSPIYVKRN-ILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKV-IRLETSPAKYTRRGVEEDV--- 142 (344) Q Consensus 68 ~~~~~~~~i~~k~n-~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~-~~L~pl~~~~~~~~~~~~~--- 142 (344) -+.+.... ....+ .+-..+.-|.+ -........+.+.+|.+|+.+..+..|.+ ..+.+++|..+....++.. T Consensus 81 ~~Gf~~~d-~~~~~~~l~~iw~~N~l--d~~~~~~~~~al~~G~sf~~V~~~~d~~~~~~i~~~sp~~~~~~~D~~~~~~ 157 (474) T protein:vir:81 81 LEGFVWPD-GDLDSLGGTEVVDDNHL--LSEIDSAIVAAMQHGPAFLINTVGEDDEPEALIHVKDASEATGEWNRRRRGL 157 (474) T ss_pred ccceECCC-CCccchHHHHHHHhcCh--hHHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEeccceEEEEEeCCCCcc Confidence 33332110 00000 01122223322 12334556788999999999988777764 4567788776653322210 Q ss_pred ---e--EEEcCCceE---EEEecc-------------------------cEEEecCCCCCCCcccccchh----hhHHHH Q lcl|Aclame:pro 143 ---Y--WWVPSFNEP---TAFAPG-------------------------SVFHLLEPDINQELYGLPEYL----SALNSA 185 (344) Q Consensus 143 ---~--~~~~~~~~~---~~~~~~-------------------------eIih~~~~~~~~~~~G~sp~~----~~~~~i 185 (344) + +....+|.. ..|.++ .|+++.+..-.++.+|.|.+. .+.+++ T Consensus 158 ~~al~~~~~~~~g~~~~~~ly~~~~~~~~~~~~~~~~w~~~~~~~~~gvPvV~~~n~~~~~~~~G~s~i~e~v~~l~da~ 237 (474) T protein:vir:81 158 NNLLSIIDKDKEGKVLSLALYLDNETVTAQRDKATLKWQVDRDEHVYGVPAQVLPYKPAPKRPFGQSRITKPMMGLQDAG 237 (474) T ss_pred eeeeEEEEEcCCCcEEEEEEEeCCcEEEEEEcCccceeeeccCCCCCCcceEEecccccccCcCCccccchhHHHHHHHH Confidence 0 111111110 111111 244544321123457777552 333333 Q ss_pred HHHHHHHHHHHHHHHccCCCceEEEecCCCC---CHHHHHHHHHHHHHhhcccccccccccCCCC-----ccccceeeec Q lcl|Aclame:pro 186 WLNESATLFRRKYYENGAHAGYIMYVTDAVQ---DRNDIEMLRENMVKSKGRNNFKNLFLYAPQG-----KADGIKIIPL 257 (344) Q Consensus 186 ~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~---~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~-----~~~g~~~~pl 257 (344) .-...-..-...||.. |--++ .+... .+++. .-...|+...+ +++.+..+. ...+.++-.+ T Consensus 238 ~r~~~~~~~~~e~~a~---pqr~i--~G~~~~~~~d~d~-~~~~~~~~~~~-----~i~~~~~d~d~~~~~~~~~~~~q~ 306 (474) T protein:vir:81 238 VRELARREGHMDVFSY---PEFWL--LGADESALKNADG-TIKSVWEARLG-----RIKGLPDDADADIPQLARADVKQF 306 (474) T ss_pred HHHHHHHHHHHHHhcc---hhhee--ecCChhhcccccc-cccchhhhhHH-----HHhcCCCccccccccccccccccc Confidence 3222222333444433 33332 22211 11110 11122222211 122111110 0113444444 Q ss_pred cCChhHHH-HHHHHHhhHHHHHHHhcCChHHhcccc-ccccccccHHHHHHHHHHHHHHHHHHHH----HHHHHhh---- Q lcl|Aclame:pro 258 SEVATKDD-FFNIKKASAADLLDAHRIPFQLMGGKP-ENVGSLGDIEKVAKVFVRNELIPLQDRI----REINGWI---- 327 (344) Q Consensus 258 ~~~~~d~q-f~e~~~~~~~~I~~~fgVPp~llG~~~-~~~~~~~n~e~~~~~f~~~~l~P~~~~i----e~ln~~L---- 327 (344) ... +++ |++..+..+..|++.=++|++.+|+.. .+.++..-+..+...+... ..=.++.+ +++.+.. T Consensus 307 ~~a--~l~~~~~~l~~~~~~~a~~t~iP~~~lG~~~~~np~SaeAi~a~~~~l~~k-ae~k~~~fg~~l~~~~rla~~i~ 383 (474) T protein:vir:81 307 PAA--SPDAHWSDINGLAKLFAREASLPDTAVAISGLSNPTSAESYDASQYELIAE-AEGAVDDFTPALRKAFIRALAMK 383 (474) T ss_pred CCC--ChhHHHHHHHHHHHHHHhhhCCCHHHhcccccccccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh Confidence 433 344 999999999999999999999999753 2222221222221111111 11111111 1111111 Q ss_pred Cc---cceecccccc--ccCCC Q lcl|Aclame:pro 328 GQ---EVIRFKNYSL--DTDNG 344 (344) Q Consensus 328 ~~---~~irf~~y~l--~~d~g 344 (344) +. .-+....+.+ .+-+- T Consensus 384 ~~~~~~~~~~~~~~~~v~W~d~ 405 (474) T protein:vir:81 384 NKVAIDEIPDEWKSIDAKWRDP 405 (474) T ss_pred CCCCccccchhhccceeEecCC Confidence 11 0000011111 11111 No 155 >protein:vir:2427 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046829;genbank:gi:9630397;genbank:GeneID:1261620 Probab=91.84 E-value=0.014 Score=30.75 Aligned_cols=300 Identities=9% Similarity=0.018 Sum_probs=107.9 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) -.+..-+..... .....+.. ..+. . |... -+..++..+..+++... -..+. T Consensus 40 ~G~~~i~~~~~~---~~~~~~~~--------~~~~------n---------~~~~--ivd~~~~~l~~~g~~~~-~~~~~ 90 (485) T protein:vir:24 40 EAERRPEAIGVT---VPVQMQSL--------LAHV------G---------YPRL--YVDSIAERQAVEGFRLG-DADEA 90 (485) T ss_pred hccCchhhcCcc---cchhhhhh--------hhcc------c---------hHHH--HHHHHhhhhccCceecC-CCchh Confidence 111100000000 00000000 0000 0 1000 00001111111111100 00000 Q ss_pred hh-hHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCce-------EEEEEeCcceeeccccCc-----e----- Q lcl|Aclame:pro 81 NI-LASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKV-------IRLETSPAKYTRRGVEED-----V----- 142 (344) Q Consensus 81 n~-~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~-------~~L~pl~~~~~~~~~~~~-----~----- 142 (344) +. +-..+..|.+ ......++.+.+.+|.||+.+.++..+.+ ..+.+++|..+.+..+.. . T Consensus 91 ~~~l~~i~~~N~~--d~~~~~~~~~a~i~G~ay~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~~i~D~~~~~~~~~~~~~ 168 (485) T protein:vir:24 91 DEELWQWWQANNL--DIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNVPLIRVEPPTRMYAEIDPRIGRPAKAIRVA 168 (485) T ss_pred HHHHHHHHHhcCh--hHHHHHHHHHHhhcCceEEEEecCCcccccccCCCcceEEEeccceeEEEeeCCcCceeEEEEEE Confidence 00 1111222321 23456778899999999999988765432 256777776554332211 0 Q ss_pred -------------------eEEEcCCceE-------EEEecccEEEecCCCCCCCcccccchhh-hHHHHHHHHHHHHHH Q lcl|Aclame:pro 143 -------------------YWWVPSFNEP-------TAFAPGSVFHLLEPDINQELYGLPEYLS-ALNSAWLNESATLFR 195 (344) Q Consensus 143 -------------------~~~~~~~~~~-------~~~~~~eIih~~~~~~~~~~~G~sp~~~-~~~~i~~~~~a~~~~ 195 (344) ++.+..++.. +.|..=.|+|+++..-.++.+|.|.+.- ....++....+..-. T Consensus 169 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~ 248 (485) T protein:vir:24 169 YDAEGNEIQAATLYTPNETFGWFRAEGEWVEWFSDPHGLGAVPVVPLPNRTRLSDLYGTSEITPELRSMTDAAARILMLM 248 (485) T ss_pred EeecCCeEEEEEEEcCCcEEEEEecCCceEeecccccCCCcccEEEeccCcccCCcCCcccchhhHHHHHHHHHHHHHHH Confidence 0111111111 1111123567764433456788887653 222233222222222 Q ss_pred HHHHHccCCCceEEEecCCCCCHHHHHH--HHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhh Q lcl|Aclame:pro 196 RKYYENGAHAGYIMYVTDAVQDRNDIEM--LRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKAS 273 (344) Q Consensus 196 ~~~f~Ng~~p~gil~~~~~~~~~e~~~~--l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~ 273 (344) .......+.|--++ .+..+++...+. -...|+.. .+.+.++. +++.++..+...+-+ .|++..+.. T Consensus 249 ~~~~~~~a~p~~~i--~G~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~----~~~~~~~q~~~~~~e-~~~~~l~~~ 316 (485) T protein:vir:24 249 QATAELMGVPQRLI--FGIKPEEIGVDPETGQTLFDAY-----LARILAFE----DAEGKIQQFSAAELA-NFTNALDQI 316 (485) T ss_pred HHHHHhhcchhhhh--ccCCccccccccccccchhhhc-----ccceeccC----CCCceEEeecccchH-HHHHHHHHH Confidence 22223334454333 232211111110 01122211 22333332 234556555443322 377777777 Q ss_pred HHHHHHHhcCChHHhccccccccccccHHHH----------HHHHHHHHHHHHHHHHHHHHHhhCccceeccccccccCC Q lcl|Aclame:pro 274 AADLLDAHRIPFQLMGGKPENVGSLGDIEKV----------AKVFVRNELIPLQDRIREINGWIGQEVIRFKNYSLDTDN 343 (344) Q Consensus 274 ~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~----------~~~f~~~~l~P~~~~ie~ln~~L~~~~irf~~y~l~~d~ 343 (344) ..+++..=++|+..+|....+.+++.-+.-. .+..+...|+-+++.+..+....+ ....+...++.|.+ T Consensus 317 i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~~~~~-~~~d~~~i~v~f~~ 395 (485) T protein:vir:24 317 AKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNAIFGGAWEEAMRLAYRLMKGGD-VPPDMLRMETVWRD 395 (485) T ss_pred HHHHhcccCCCHHHhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CccccceeeEEecC Confidence 7888888899999998654332222111111 111112222222222222111111 11112233444544 Q ss_pred C Q lcl|Aclame:pro 344 G 344 (344) Q Consensus 344 g 344 (344) . T Consensus 396 ~ 396 (485) T protein:vir:24 396 P 396 (485) T ss_pred C Confidence 3 No 156 >protein:vir:107517 Length: 639 # NCBI annotation: gp8 # Family: family:all:2798 # MgeID: mge:1481 # MgeName: PG1 # Cross-refs: genbank:acc:NP_943786;genbank:gi:38638411;genbank:GeneID:2657197 Probab=91.83 E-value=0.014 Score=30.74 Aligned_cols=336 Identities=11% Similarity=0.067 Sum_probs=146.2 Q ss_pred CC--------CCCCCCCCcchhhcccccccee----E--EEcCCc--eeccCcch-hhhhh-hhhccchhhhccccHHHH Q lcl|Aclame:pro 1 MS--------KKKGKTPQPAAKTMTASAPKME----A--FTFGEP--VPVLDRRD-ILDYV-ECISNGRWYEPPVSFTGL 62 (344) Q Consensus 1 m~--------~~~~~~~~~~~~~~~~~~~~~~----~--f~~~~p--~~~~~~~~-~~~~~-~~~~~~~~~~~p~~~~~l 62 (344) |. |.|...+.....+.++++..+. . -+.+++ ..+=+.+| ++|.+ |+-+--.|..+.++...| T Consensus 1 ma~~~lr~~rrpk~~p~~~rr~~ltaAsq~~~~p~~~~kt~~~~~ar~~WQ~eAW~~~d~v~Elry~vgW~~~s~sr~rL 80 (639) T protein:vir:10 1 MAATSLRVVRRPKGSAPAARRRSLTAASQLITDPQKQMKTSLMGTARNEWQSEAWDFSESIGELSYYVSWRANSCSRTTL 80 (639) T ss_pred CCccceeeeecCCCCCcchhhHHHhhhhhccCCcccchhhhccccchhhhhhhhhhhhhhhhhHHHHhhhhhhhhceeee Confidence 32 2233222222233333332220 0 010111 00000111 11110 010111133222222111 Q ss_pred HHHHh--hhhhhhhh---hhhcc-------hhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEe-eCCCCc------e Q lcl|Aclame:pro 63 AKSLR--AAVHHSSP---IYVKR-------NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKR-YSTTGK------V 123 (344) Q Consensus 63 ~~~~~--~~~~~~~~---i~~k~-------n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~-r~~~G~------~ 123 (344) +. ..+.-+.+ +.... -......-..++-..+.++.++.++-+-|.+|+-++ |...+. + T Consensus 81 ---~as~idpDtg~PtG~V~~E~d~~~~~v~~~v~~iagG~lGqa~llkr~~~~ltV~GE~wi~~l~r~~k~~~~~~~~~ 157 (639) T protein:vir:10 81 ---IPSAIDPDTGLPTGEVDIEEDPDAQTVADYVKGIADGPLGQAALIKRAVECMTVVGEVWIAVLIRQEKDPVTGLAAP 157 (639) T ss_pred ---EeeeeccccCCCCCccccccccCcchHHHHHHhhcCccchHHHHHHHHHhheecccceEEEEEEecCccccCccccc Confidence 10 00000100 11000 011111223344455678888899999999997643 444332 2 Q ss_pred EEEEE-eCcceeeccccCceeEEEcCCceEEEEecc-c-EEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 124 IRLET-SPAKYTRRGVEEDVYWWVPSFNEPTAFAPG-S-VFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYE 200 (344) Q Consensus 124 ~~L~p-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e-Iih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~ 200 (344) .+-|. +....+..... +.--....+|..++|..+ + ++.+=.++|..-.+--||..+++.++.--.-.++..++.-+ T Consensus 158 ~~~W~vvs~~Ei~~~~~-~~~~i~lPdG~~he~~~~~d~l~RvW~P~prr~~e~dSpvra~l~~l~Ei~~~t~~i~aaak 236 (639) T protein:vir:10 158 RARWYAVTREEIKSKAG-ETAEISLPDGKTHEFNRDLDSLVRIWNPRPRKASQATSPVRACLETLREIERTTRKIKNAAK 236 (639) T ss_pred ccceeeeeHHHhcccCC-CeeEeecCCCCCccccCCCceEEEEeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHH Confidence 33333 33334432222 222122335556666543 2 33344677777778899999999988887777777766666 Q ss_pred ccCCCceEEEecCCCC----C--------------------HHHHHHHHHHH----HHhh---cccccccccccCCCCcc Q lcl|Aclame:pro 201 NGAHAGYIMYVTDAVQ----D--------------------RNDIEMLRENM----VKSK---GRNNFKNLFLYAPQGKA 249 (344) Q Consensus 201 Ng~~p~gil~~~~~~~----~--------------------~e~~~~l~~~~----~~~~---g~~n~~~~~vl~~~~~~ 249 (344) .-..-.|||.++.... . ....+.|.+.| .... +...+--++|+...+ + T Consensus 237 SRl~gnGvlfvP~els~p~~~~p~~~~~~~~pg~~v~~~~~~~a~d~l~~~l~qaa~tai~De~S~aA~vPiia~~p~-E 315 (639) T protein:vir:10 237 SRVMNNGVLFVPAEMSLPAAQAPIPAGQAQIPGAPVPEVSGVPASEQLATMIYQASVAAMEDENSQAAYIPLVASVAA-E 315 (639) T ss_pred HHHhhCceeeeccccCCCCccccccccccccCcccccccCCccchHHHHHHHHHHHHhhhcCCCCccceeeeeEeech-H Confidence 6666666766653210 0 01133333333 2221 222333444443222 3 Q ss_pred ccceeeeccCChhH-HHHHHHHHhhHHHHHHHhcCChH-HhccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHH- Q lcl|Aclame:pro 250 DGIKIIPLSEVATK-DDFFNIKKASAADLLDAHRIPFQ-LMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-ING- 325 (344) Q Consensus 250 ~g~~~~pl~~~~~d-~qf~e~~~~~~~~I~~~fgVPp~-llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~- 325 (344) -.-+++.|.....- ..-+.+|+-.+..||...-|||. ++|+. +.+=| ++=+....=++.-|.|.+..|.+ |.+ T Consensus 316 ~l~~ikhl~f~~ei~e~aiktR~daI~RlA~glDi~pE~LLGl~-d~NHW--sAWqI~dedvrlHI~P~l~~icdAlT~~ 392 (639) T protein:vir:10 316 HLEKVQHIKFGNEVTEVEIKTRIDAITRLAMGLDVSPERLLGMS-KGNHW--SAWAIGDEDVQLHIKPVMDLICQAIYND 392 (639) T ss_pred HhcCeeeeeecCchhHHHHhhHHHHHHHHHhccCCchhheeecc-cccce--EEEEecccceeeecchhHHHHHHHHHhh Confidence 33345556554443 33678999999999999999997 66873 22212 11111122233345555555543 322 Q ss_pred hh-------Cc----cceeccccccccCCC Q lcl|Aclame:pro 326 WI-------GQ----EVIRFKNYSLDTDNG 344 (344) Q Consensus 326 ~L-------~~----~~irf~~y~l~~d~g 344 (344) +| |- .++=|+...|-.+.- T Consensus 393 ~Lrp~Le~eGvDp~kYvvW~DaS~Lt~dPd 422 (639) T protein:vir:10 393 ILTPLLAREGIDPTKYILWYDASGLTSDPD 422 (639) T ss_pred HHHHHHHHhCCCHHHhEeeecCcccccCCC Confidence 22 11 122233333322222 No 157 >protein:vir:97900 Length: 639 # NCBI annotation: gp8 # Family: family:all:2798 # MgeID: mge:1482 # MgeName: Orion # Cross-refs: genbank:acc:YP_655104;genbank:gi:109391854;genbank:GeneID:4157263 Probab=91.83 E-value=0.014 Score=30.74 Aligned_cols=336 Identities=11% Similarity=0.067 Sum_probs=146.2 Q ss_pred CC--------CCCCCCCCcchhhcccccccee----E--EEcCCc--eeccCcch-hhhhh-hhhccchhhhccccHHHH Q lcl|Aclame:pro 1 MS--------KKKGKTPQPAAKTMTASAPKME----A--FTFGEP--VPVLDRRD-ILDYV-ECISNGRWYEPPVSFTGL 62 (344) Q Consensus 1 m~--------~~~~~~~~~~~~~~~~~~~~~~----~--f~~~~p--~~~~~~~~-~~~~~-~~~~~~~~~~~p~~~~~l 62 (344) |. |.|...+.....+.++++..+. . -+.+++ ..+=+.+| ++|.+ |+-+--.|..+.++...| T Consensus 1 ma~~~lr~~rrpk~~p~~~rr~~ltaAsq~~~~p~~~~kt~~~~~ar~~WQ~eAW~~~d~v~Elry~vgW~~~s~sr~rL 80 (639) T protein:vir:97 1 MAATSLRVVRRPKGSAPAARRRSLTAASQLITDPQKQMKTSLMGTARNEWQSEAWDFSESIGELSYYVSWRANSCSRTTL 80 (639) T ss_pred CCccceeeeecCCCCCcchhhHHHhhhhhccCCcccchhhhccccchhhhhhhhhhhhhhhhhHHHHhhhhhhhhceeee Confidence 32 2233222222233333332220 0 010111 00000111 11110 010111133222222111 Q ss_pred HHHHh--hhhhhhhh---hhhcc-------hhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEe-eCCCCc------e Q lcl|Aclame:pro 63 AKSLR--AAVHHSSP---IYVKR-------NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKR-YSTTGK------V 123 (344) Q Consensus 63 ~~~~~--~~~~~~~~---i~~k~-------n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~-r~~~G~------~ 123 (344) +. ..+.-+.+ +.... -......-..++-..+.++.++.++-+-|.+|+-++ |...+. + T Consensus 81 ---~as~idpDtg~PtG~V~~E~d~~~~~v~~~v~~iagG~lGqa~llkr~~~~ltV~GE~wi~~l~r~~k~~~~~~~~~ 157 (639) T protein:vir:97 81 ---IPSAIDPDTGLPTGEVDIEEDPDAQTVADYVKGIADGPLGQAALIKRAVECMTVVGEVWIAVLIRQEKDPVTGLAAP 157 (639) T ss_pred ---EeeeeccccCCCCCccccccccCcchHHHHHHhhcCccchHHHHHHHHHhheecccceEEEEEEecCccccCccccc Confidence 10 00000100 11000 011111223344455678888899999999997643 444332 2 Q ss_pred EEEEE-eCcceeeccccCceeEEEcCCceEEEEecc-c-EEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 124 IRLET-SPAKYTRRGVEEDVYWWVPSFNEPTAFAPG-S-VFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYE 200 (344) Q Consensus 124 ~~L~p-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e-Iih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~ 200 (344) .+-|. +....+..... +.--....+|..++|..+ + ++.+=.++|..-.+--||..+++.++.--.-.++..++.-+ T Consensus 158 ~~~W~vvs~~Ei~~~~~-~~~~i~lPdG~~he~~~~~d~l~RvW~P~prr~~e~dSpvra~l~~l~Ei~~~t~~i~aaak 236 (639) T protein:vir:97 158 RARWYAVTREEIKSKAG-ETAEISLPDGKTHEFNRDLDSLVRIWNPRPRKASQATSPVRACLETLREIERTTRKIKNAAK 236 (639) T ss_pred ccceeeeeHHHhcccCC-CeeEeecCCCCCccccCCCceEEEEeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHH Confidence 33333 33334432222 222122335556666543 2 33344677777778899999999988887777777766666 Q ss_pred ccCCCceEEEecCCCC----C--------------------HHHHHHHHHHH----HHhh---cccccccccccCCCCcc Q lcl|Aclame:pro 201 NGAHAGYIMYVTDAVQ----D--------------------RNDIEMLRENM----VKSK---GRNNFKNLFLYAPQGKA 249 (344) Q Consensus 201 Ng~~p~gil~~~~~~~----~--------------------~e~~~~l~~~~----~~~~---g~~n~~~~~vl~~~~~~ 249 (344) .-..-.|||.++.... . ....+.|.+.| .... +...+--++|+...+ + T Consensus 237 SRl~gnGvlfvP~els~p~~~~p~~~~~~~~pg~~v~~~~~~~a~d~l~~~l~qaa~tai~De~S~aA~vPiia~~p~-E 315 (639) T protein:vir:97 237 SRVMNNGVLFVPAEMSLPAAQAPIPAGQAQIPGAPVPEVSGVPASEQLATMIYQASVAAMEDENSQAAYIPLVASVAA-E 315 (639) T ss_pred HHHhhCceeeeccccCCCCccccccccccccCcccccccCCccchHHHHHHHHHHHHhhhcCCCCccceeeeeEeech-H Confidence 6666666766653210 0 01133333333 2221 222333444443222 3 Q ss_pred ccceeeeccCChhH-HHHHHHHHhhHHHHHHHhcCChH-HhccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHH- Q lcl|Aclame:pro 250 DGIKIIPLSEVATK-DDFFNIKKASAADLLDAHRIPFQ-LMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-ING- 325 (344) Q Consensus 250 ~g~~~~pl~~~~~d-~qf~e~~~~~~~~I~~~fgVPp~-llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~- 325 (344) -.-+++.|.....- ..-+.+|+-.+..||...-|||. ++|+. +.+=| ++=+....=++.-|.|.+..|.+ |.+ T Consensus 316 ~l~~ikhl~f~~ei~e~aiktR~daI~RlA~glDi~pE~LLGl~-d~NHW--sAWqI~dedvrlHI~P~l~~icdAlT~~ 392 (639) T protein:vir:97 316 HLEKVQHIKFGNEVTEVEIKTRIDAITRLAMGLDVSPERLLGMS-KGNHW--SAWAIGDEDVQLHIKPVMDLICQAIYND 392 (639) T ss_pred HhcCeeeeeecCchhHHHHhhHHHHHHHHHhccCCchhheeecc-cccce--EEEEecccceeeecchhHHHHHHHHHhh Confidence 33345556554443 33678999999999999999997 66873 22212 11111122233345555555543 322 Q ss_pred hh-------Cc----cceeccccccccCCC Q lcl|Aclame:pro 326 WI-------GQ----EVIRFKNYSLDTDNG 344 (344) Q Consensus 326 ~L-------~~----~~irf~~y~l~~d~g 344 (344) +| |- .++=|+...|-.+.- T Consensus 393 ~Lrp~Le~eGvDp~kYvvW~DaS~Lt~dPd 422 (639) T protein:vir:97 393 ILTPLLAREGIDPTKYILWYDASGLTSDPD 422 (639) T ss_pred HHHHHHHHhCCCHHHhEeeecCcccccCCC Confidence 22 11 122233333322222 No 158 >protein:vir:95806 Length: 440 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950583;genbank:gi:119953778;genbank:GeneID:5076876 Probab=91.29 E-value=0.017 Score=30.35 Aligned_cols=299 Identities=11% Similarity=0.011 Sum_probs=111.5 Q ss_pred CC------CCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhh Q lcl|Aclame:pro 1 MS------KKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSS 74 (344) Q Consensus 1 m~------~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~ 74 (344) .. ++..+.... .+..++ +..|.. . +.+. ..+-.+..|+.+..- +... T Consensus 21 ~g~~~~~~~~~~~~~~~------~~~~ki-~~n~~~--~------ivd~----~~~~l~g~~~~~~~~------~~~~-- 73 (440) T protein:vir:95 21 QGDNFSILSGHRRLDDE------KADYRV-RHKWGG--Y------ISSF----ATGYVIGNPVSIGVM------EGGS-- 73 (440) T ss_pred ccCCccccccccccccc------CCccee-ecchHH--H------HHHh----hhhheeccCceEeeC------CCcc-- Confidence 11 111100000 000000 000000 0 0000 000011112211000 0000 Q ss_pred hhhhcchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---------eeEE Q lcl|Aclame:pro 75 PIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWW 145 (344) Q Consensus 75 ~i~~k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~~~ 145 (344) ....+.+...+..|.+ ......++.+.+.+|.+|..+..+..|.+ .+..++|..+.+..+.. ++|. T Consensus 74 --~~~~~~l~~~~~~n~~--~~~~~~~~~~~~~~G~a~~~~~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~ 148 (440) T protein:vir:95 74 --ADQLSTIKDIEWQNDI--NALNSDLAFDASVYGRAYEYHFRDKDKVD-RVVLISPLEMFVIRDLTVEQNIIAAVHLPI 148 (440) T ss_pred --HHHHHHHHHHHHhcCH--hHHHHHHHHHHhhcCeEEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEE Confidence 0000011111222221 22345677789999999999998888875 35556666554432211 0111 Q ss_pred EcCCceEEEEecc----------------------------cEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 146 VPSFNEPTAFAPG----------------------------SVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRK 197 (344) Q Consensus 146 ~~~~~~~~~~~~~----------------------------eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~ 197 (344) .........+.++ .|+++++. ..|.|.+......++.-+.+..-..+ T Consensus 149 ~~~~~~~~vyt~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~-----~~g~sd~e~v~~lida~~~~~s~~~~ 223 (440) T protein:vir:95 149 YADKVNMTVYTKDKVITYKPYSNNSVRLVVDDVKKHSYNDVPVVEWWNN-----RFRMGDYESEISLIDAYDAGQSDTAN 223 (440) T ss_pred ecCceEEEEEeCCeEEEEEEecCCccceeecceeeccCceeeEEEeeCC-----CCCCCchhhhHHHHHHHHHHHHHHHH Confidence 1111000111222 24444431 24677776665555554444444444 Q ss_pred HHHccCCCceEEEec--CCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHH Q lcl|Aclame:pro 198 YYENGAHAGYIMYVT--DAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAA 275 (344) Q Consensus 198 ~f~Ng~~p~gil~~~--~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~ 275 (344) ..+..+.|-.+++-. +...++++...+++.-.-... . +.... +.+....+++ +........+.+..+...+ T Consensus 224 ~~~~~~~~~~v~~g~~~~~~~~~e~~~~~~~~~~~~~~-~---~~~~~-~~~~~~~~~~--lt~~~~~~~~~~~~~~l~~ 296 (440) T protein:vir:95 224 YMSDLNDAMLLVKGDLDGIKLSPEDAAKMKDANMLFLK-T---GISTT-GQQTTADASY--IYKQYDVNGTEAYKNRLAN 296 (440) T ss_pred HHHHhhcceeeeecccccCCCCccchhhhhhccceecc-c---ccccc-cCCCCcceeE--EeecCCHHHHHHHHHHHHH Confidence 445555565554321 122344544444332211100 0 00000 1111223333 3333344557778888899 Q ss_pred HHHHHhcCChHHhccccccccccccHHH----------HHHHHHHHHHHHHHHHHHHHHHhhCccceeccccccccCCC Q lcl|Aclame:pro 276 DLLDAHRIPFQLMGGKPENVGSLGDIEK----------VAKVFVRNELIPLQDRIREINGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 276 ~I~~~fgVPp~llG~~~~~~~~~~n~e~----------~~~~f~~~~l~P~~~~ie~ln~~L~~~~irf~~y~l~~d~g 344 (344) .|...-++|..-.+-..++. ++--++. ..+..+...+.-+++.+..+-.......+.....++.|... T Consensus 297 ~i~~~s~~p~~~~~~~~~n~-Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~v~i~f~~~ 374 (440) T protein:vir:95 297 DIHRFSRIPNLDDDRFNSTS-SGIALLYKMIGLEQVRKDKETYFTKALRRRYELISNIHKAINGPVIEANKLTFTFHPN 374 (440) T ss_pred HHHHHhCCcccccccccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccceEEeCCC Confidence 99999999975443221111 1111111 11122222233222222221111111112223445666666 No 159 >protein:vir:97447 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240744;genbank:gi:66396413;genbank:GeneID:5133803 Probab=90.86 E-value=0.019 Score=30.06 Aligned_cols=288 Identities=8% Similarity=0.029 Sum_probs=110.0 Q ss_pred CCCC----CCCCCCcc-hhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhh Q lcl|Aclame:pro 1 MSKK----KGKTPQPA-AKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSP 75 (344) Q Consensus 1 m~~~----~~~~~~~~-~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~ 75 (344) +.+. ++++.... ......+-.++ ++.|.. .+.+. ..+-.+..|+.+. + T Consensus 54 ~g~~~i~~~~~~~~~~~~~~~~~~~~ki-~~n~~k--------~Ivd~----~~~~l~g~p~~~~--------------~ 106 (474) T protein:vir:97 54 DKDNDIVKQMKKVDVHGNIDYDKPDWRI-TTNFHQ--------NLVDQ----KVSYVASKPVTYS--------------C 106 (474) T ss_pred ccccchhcccchhccccccccccCccee-ecchHH--------HHHHH----HHhhhhcCCceec--------------c Confidence 2211 00000000 00000000000 011100 01110 0011112222221 0 Q ss_pred hhhcchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---------eeEEE Q lcl|Aclame:pro 76 IYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWV 146 (344) Q Consensus 76 i~~k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~~~~ 146 (344) -.......+..+..|.+ ...+..++.+.+.+|.+|..+..+..|++ .+..++|..+-+..+.. ++|.. T Consensus 107 ~d~~~~~~l~~~~~n~~--~~~~~e~~~~~~~~G~~~~~~~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~ 183 (474) T protein:vir:97 107 EDENVLKVIHDVLDTRW--DNKLIDILTATSNKGIDWLQVYINENGEM-KLFRVPAEQAIPIWVDKEREELKSFIRYYKF 183 (474) T ss_pred CcHHHHHHHHHHHhccH--HHHHHHHHHHHhhcCceEEEEEecCCCee-EEEEEcccceEEEEcCCCCCceEEEEEEEEe Confidence 00111111222222321 24455677889999999999988888864 45556665544332211 11111 Q ss_pred cCCceEEEEeccc-----------------------------------EEEecCCCCCCCcccccchhhhHHHHHHHHHH Q lcl|Aclame:pro 147 PSFNEPTAFAPGS-----------------------------------VFHLLEPDINQELYGLPEYLSALNSAWLNESA 191 (344) Q Consensus 147 ~~~~~~~~~~~~e-----------------------------------Iih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a 191 (344) ........+..+. |+++++ ..+|.|.+......++.-+.+ T Consensus 184 ~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----n~~g~sd~e~v~~liDa~n~~ 258 (474) T protein:vir:97 184 NNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHVQSHFSNGNWGRVPFIAFKN-----NPEEVSDIWMYKSIIDAIDKR 258 (474) T ss_pred cCeEEEEEEeCCeEEEEEEcCCccccccccCcCcccccccccCCCccceEEecC-----CcCCCCcHHHHHHHHHHHHHH Confidence 1110001111112 333332 235777777766666654444 Q ss_pred HHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHH Q lcl|Aclame:pro 192 TLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKK 271 (344) Q Consensus 192 ~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~ 271 (344) ..-..+.++..+.|-.++ ++...++ .+.....+ ...+++.+.++ .++++.. .......+.+..+ T Consensus 259 ~s~~~~~~~~~~~~~lv~--~g~~~~~--~~~~~~~~-------~~~~~i~~~~~---~~~~~l~--~~~~~~~~~~~~~ 322 (474) T protein:vir:97 259 LSDAQNMFDESVELIYIL--KGYEGED--LEEFMRGL-------KYYKAINVDGD---GGVETIQ--VEVPVSSTKEYID 322 (474) T ss_pred HHHHHHHHHHhcCceeee--ecCCccc--chhhhhhh-------hccceeeccCC---CceeEEe--ecCCHHHHHHHHH Confidence 444444445555554444 4433222 11112111 12344444433 2344433 3334455666777 Q ss_pred hhHHHHHHHhcCChHHhccccccccccccHH----------HHHHHHHHHHHHHHHHHHHHHHHhhCccceecccccccc Q lcl|Aclame:pro 272 ASAADLLDAHRIPFQLMGGKPENVGSLGDIE----------KVAKVFVRNELIPLQDRIREINGWIGQEVIRFKNYSLDT 341 (344) Q Consensus 272 ~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e----------~~~~~f~~~~l~P~~~~ie~ln~~L~~~~irf~~y~l~~ 341 (344) .-.+.|...-++|..-.+-. .++.++--++ ...+..+...|.-+++.+.+ .++.. ..+....+.| T Consensus 323 ~l~~~I~~~s~~p~~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~---~~~~~-~d~~~i~v~f 397 (474) T protein:vir:97 323 LMRVYIMEFGQGVDFQTDKF-GSAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIID---FNNLK-TDVKDIEISF 397 (474) T ss_pred HHHHHHHHHhCccccCcccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCC-cccceeeEEe Confidence 78888999988885322111 0111110000 01112222233333322222 22332 1334445666 Q ss_pred CCC Q lcl|Aclame:pro 342 DNG 344 (344) Q Consensus 342 d~g 344 (344) +.. T Consensus 398 ~~~ 400 (474) T protein:vir:97 398 NFN 400 (474) T ss_pred ccC Confidence 666 No 160 >protein:vir:94498 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240672;genbank:gi:66396340;genbank:GeneID:5133762 Probab=90.86 E-value=0.019 Score=30.06 Aligned_cols=288 Identities=8% Similarity=0.029 Sum_probs=110.0 Q ss_pred CCCC----CCCCCCcc-hhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhh Q lcl|Aclame:pro 1 MSKK----KGKTPQPA-AKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSP 75 (344) Q Consensus 1 m~~~----~~~~~~~~-~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~ 75 (344) +.+. ++++.... ......+-.++ ++.|.. .+.+. ..+-.+..|+.+. + T Consensus 54 ~g~~~i~~~~~~~~~~~~~~~~~~~~ki-~~n~~k--------~Ivd~----~~~~l~g~p~~~~--------------~ 106 (474) T protein:vir:94 54 DKDNDIVKQMKKVDVHGNIDYDKPDWRI-TTNFHQ--------NLVDQ----KVSYVASKPVTYS--------------C 106 (474) T ss_pred ccccchhcccchhccccccccccCccee-ecchHH--------HHHHH----HHhhhhcCCceec--------------c Confidence 2211 00000000 00000000000 011100 01110 0011112222221 0 Q ss_pred hhhcchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---------eeEEE Q lcl|Aclame:pro 76 IYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWV 146 (344) Q Consensus 76 i~~k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~~~~ 146 (344) -.......+..+..|.+ ...+..++.+.+.+|.+|..+..+..|++ .+..++|..+-+..+.. ++|.. T Consensus 107 ~d~~~~~~l~~~~~n~~--~~~~~e~~~~~~~~G~~~~~~~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~ 183 (474) T protein:vir:94 107 EDENVLKVIHDVLDTRW--DNKLIDILTATSNKGIDWLQVYINENGEM-KLFRVPAEQAIPIWVDKEREELKSFIRYYKF 183 (474) T ss_pred CcHHHHHHHHHHHhccH--HHHHHHHHHHHhhcCceEEEEEecCCCee-EEEEEcccceEEEEcCCCCCceEEEEEEEEe Confidence 00111111222222321 24455677889999999999988888864 45556665544332211 11111 Q ss_pred cCCceEEEEeccc-----------------------------------EEEecCCCCCCCcccccchhhhHHHHHHHHHH Q lcl|Aclame:pro 147 PSFNEPTAFAPGS-----------------------------------VFHLLEPDINQELYGLPEYLSALNSAWLNESA 191 (344) Q Consensus 147 ~~~~~~~~~~~~e-----------------------------------Iih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a 191 (344) ........+..+. |+++++ ..+|.|.+......++.-+.+ T Consensus 184 ~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----n~~g~sd~e~v~~liDa~n~~ 258 (474) T protein:vir:94 184 NNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHVQSHFSNGNWGRVPFIAFKN-----NPEEVSDIWMYKSIIDAIDKR 258 (474) T ss_pred cCeEEEEEEeCCeEEEEEEcCCccccccccCcCcccccccccCCCccceEEecC-----CcCCCCcHHHHHHHHHHHHHH Confidence 1110001111112 333332 235777777766666654444 Q ss_pred HHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHH Q lcl|Aclame:pro 192 TLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKK 271 (344) Q Consensus 192 ~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~ 271 (344) ..-..+.++..+.|-.++ ++...++ .+.....+ ...+++.+.++ .++++.. .......+.+..+ T Consensus 259 ~s~~~~~~~~~~~~~lv~--~g~~~~~--~~~~~~~~-------~~~~~i~~~~~---~~~~~l~--~~~~~~~~~~~~~ 322 (474) T protein:vir:94 259 LSDAQNMFDESVELIYIL--KGYEGED--LEEFMRGL-------KYYKAINVDGD---GGVETIQ--VEVPVSSTKEYID 322 (474) T ss_pred HHHHHHHHHHhcCceeee--ecCCccc--chhhhhhh-------hccceeeccCC---CceeEEe--ecCCHHHHHHHHH Confidence 444444445555554444 4433222 11112111 12344444433 2344433 3334455666777 Q ss_pred hhHHHHHHHhcCChHHhccccccccccccHH----------HHHHHHHHHHHHHHHHHHHHHHHhhCccceecccccccc Q lcl|Aclame:pro 272 ASAADLLDAHRIPFQLMGGKPENVGSLGDIE----------KVAKVFVRNELIPLQDRIREINGWIGQEVIRFKNYSLDT 341 (344) Q Consensus 272 ~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e----------~~~~~f~~~~l~P~~~~ie~ln~~L~~~~irf~~y~l~~ 341 (344) .-.+.|...-++|..-.+-. .++.++--++ ...+..+...|.-+++.+.+ .++.. ..+....+.| T Consensus 323 ~l~~~I~~~s~~p~~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~---~~~~~-~d~~~i~v~f 397 (474) T protein:vir:94 323 LMRVYIMEFGQGVDFQTDKF-GSAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIID---FNNLK-TDVKDIEISF 397 (474) T ss_pred HHHHHHHHHhCccccCcccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCC-cccceeeEEe Confidence 78888999988885322111 0111110000 01112222233333322222 22332 1334445666 Q ss_pred CCC Q lcl|Aclame:pro 342 DNG 344 (344) Q Consensus 342 d~g 344 (344) +.. T Consensus 398 ~~~ 400 (474) T protein:vir:94 398 NFN 400 (474) T ss_pred ccC Confidence 666 No 161 >protein:vir:93747 Length: 472 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240454;genbank:gi:66396119;genbank:GeneID:5133516 Probab=90.49 E-value=0.021 Score=29.83 Aligned_cols=284 Identities=7% Similarity=0.004 Sum_probs=112.3 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) +.++++.-.... ......-.++ ++.|.. .+.|- ..+-.+..|+.+.. -.... T Consensus 57 ~~~~~~~~~~~~-~~~~~~~~ri-~~n~~~--------~ivd~----~~~~l~g~~~~~~~--------------~d~~~ 108 (472) T protein:vir:93 57 VKEPKPVDATGA-VDPLKPDDRM-ITNFHA--------NLVDQ----KVSYIVGKPIAFKH--------------TDDEV 108 (472) T ss_pred ccccchhhcccc-cccccccccc-ccchHH--------HHHHH----HhhhhcccCeeecc--------------CChHH Confidence 111111000000 0000000000 000000 00000 00111122222110 00011 Q ss_pred hhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---------eeEEEcCCce Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPSFNE 151 (344) Q Consensus 81 n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~~~~~~~~~ 151 (344) ...+..+..|.+ ......+..+.+.+|.||..+..+..|++ .+..++|..+.+..+.. ++|....... T Consensus 109 ~~~l~~~~~n~~--~~~~~~~~~~~~~~G~~~~~v~~d~d~~~-~i~~~~p~~~~~i~d~~~~~~~~~~ir~~~~~~~~~ 185 (472) T protein:vir:93 109 VKRIDEVLGNRF--DDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETK 185 (472) T ss_pred HHHHHHHHhccH--HHHHHHHHHHHhhcCeEEEEEEECCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEeeccee Confidence 112222223322 23445567889999999999999888864 46667776554432211 1111111111 Q ss_pred EEEEecc-----------------------------------cEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 152 PTAFAPG-----------------------------------SVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRR 196 (344) Q Consensus 152 ~~~~~~~-----------------------------------eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~ 196 (344) ...+.+. .|+++++ .-.|.|.+......++....+..-.. T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~n-----n~~g~s~~e~v~~liDa~~~~~s~~~ 260 (472) T protein:vir:93 186 VEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISDIFMYKTLIDAYNRRLSDLS 260 (472) T ss_pred EEEEecCeEEEEEEecCeeeecccccccccccccccCCCCCcceEEecC-----CCCCCCchhhhHHHHHHHHHHHHHHH Confidence 1111111 1333332 23578888777666655554444444 Q ss_pred HHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHH Q lcl|Aclame:pro 197 KYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAAD 276 (344) Q Consensus 197 ~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~ 276 (344) +-+...+.|-.++ ++.. .++.......++. .+++.+..+ +++++. ........+.+..+.-.+. T Consensus 261 ~~~~~~~~~~~~~--~g~~--~~~~~~~~~~~~~-------~~~~~~~~~---~~~~~l--~~~~~~~~~~~~~~~l~~~ 324 (472) T protein:vir:93 261 NTFKDSNELTYVL--TNYD--DQELPEFKRLLRY-------YGAIKVSDN---GGVDTI--QVEVPVENSKKYLDELYQK 324 (472) T ss_pred HHHHHhcCceeEe--ecCC--cccchhhHHHHhh-------ccccccCCC---CcceeE--eecCCHHHHHHHHHHHHHH Confidence 5556666675444 3322 2222222222211 123333322 234443 3333456778888888999 Q ss_pred HHHHhcCChHHhccccccccccccHHHHHHHH-------------HHHHHHHHHHHHHHHHHhhCccceeccccccccCC Q lcl|Aclame:pro 277 LLDAHRIPFQLMGGKPENVGSLGDIEKVAKVF-------------VRNELIPLQDRIREINGWIGQEVIRFKNYSLDTDN 343 (344) Q Consensus 277 I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f-------------~~~~l~P~~~~ie~ln~~L~~~~irf~~y~l~~d~ 343 (344) |+..-++|....+...++ . +.+.....+ +...|.-+++. +...++... .+...++.|+. T Consensus 325 i~~~s~~p~~~~~~~~~n-~---Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~l---i~~~~~~~~-~~~~i~v~f~~ 396 (472) T protein:vir:93 325 IMLFGQAVDFSSDKFGSA-P---SGVALEFLYTNLNLKADKLARKAKVAIQELLWF---VFEHFDIKG-EHKDVDISFNY 396 (472) T ss_pred HHHHhCCCCCCccccccC-c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCCCc-ccceeeEEeCC Confidence 999999996544322111 1 111111111 11111111111 122223221 23445566666 Q ss_pred C Q lcl|Aclame:pro 344 G 344 (344) Q Consensus 344 g 344 (344) + T Consensus 397 ~ 397 (472) T protein:vir:93 397 N 397 (472) T ss_pred C Confidence 6 No 162 >protein:vir:2732 Length: 501 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695105;genbank:gi:23455874;genbank:GeneID:955614 Probab=89.27 E-value=0.027 Score=29.16 Aligned_cols=302 Identities=11% Similarity=0.014 Sum_probs=112.3 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) ..+.+.-...+........-.++ +.+ +..++--...+-.+..|+.+..-. .... ... T Consensus 67 ~g~~~~i~~~~~~~~~~~~~~ki----------~~n---~~k~Ivd~~~~yl~g~p~~~~~~d-----~~~~-----~~~ 123 (501) T protein:vir:27 67 RGENHDVLQFGRRKDREMADKRA----------VHN---YGRMISKFKTGYLAGNPIRVEYDD-----NDNN-----SQN 123 (501) T ss_pred cCCCccccccCccCcccccccee----------ccc---hHHHHHHHHhhhhcccCeeEecCC-----ccch-----HHH Confidence 11111000000000000000000 000 000000001111122222221000 0000 000 Q ss_pred hh-hHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---------eeEEEcC-- Q lcl|Aclame:pro 81 NI-LASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPS-- 148 (344) Q Consensus 81 n~-~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~~~~~~-- 148 (344) .. +...+.-|.+ ......++.+.+.+|.||..+.++..|++ .+..++|..+.+..+.. +||.... T Consensus 124 ~~~l~~~~~~n~~--~~~~~~~~~~~~~~G~a~~~vy~ded~~~-~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~ 200 (501) T protein:vir:27 124 DDTIKRIGRINDI--DSHNRTLIRDLSQTGRAYEVIYRNEYDET-RIKRLNPLETFVIYDNSLEDNSIAAVRYYNRGTLQ 200 (501) T ss_pred HHHHHHHHHhcCh--hHHHHHHHHHHhhCCeEEEEEEeCCCCce-EEEEEccceeEEEecCCCCCceEEEEEEEEeeecC Confidence 00 1111222322 24566778899999999999999888864 45556666554322211 1121111 Q ss_pred Cce-E-EEEecc------------------------cEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHcc Q lcl|Aclame:pro 149 FNE-P-TAFAPG------------------------SVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENG 202 (344) Q Consensus 149 ~~~-~-~~~~~~------------------------eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng 202 (344) ++. . ..+.++ .|+++++ ...|.|.+......++....+..-..+.+... T Consensus 201 ~~~~~~~vyt~~~v~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~ 275 (501) T protein:vir:27 201 NAKDVVEIYTNEHIYTLDASDDFNEISVTTHAFGTVPITEFLN-----NVDGIGDYETELYLIDLYDSAESDTANHMSDM 275 (501) T ss_pred CcEEEEEEEeCCeEEEEEeCCceeeccccccCCCcccEEEecC-----CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHh Confidence 000 0 011111 2344432 22577777776666665555554445555555 Q ss_pred CCCceEEEecCCCC--CHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHH Q lcl|Aclame:pro 203 AHAGYIMYVTDAVQ--DRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDA 280 (344) Q Consensus 203 ~~p~gil~~~~~~~--~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~ 280 (344) +.|-.++ ++... +++....++... .......+. +.+...+.++..++....+..+.+..+.-.+.|+.. T Consensus 276 ~~~~~v~--~g~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~ 346 (501) T protein:vir:27 276 ADAILAI--YGDLALPKGMQASDMKRTR--LMQLKPPKS-----ADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDIHIF 346 (501) T ss_pred cCceeee--ecCccCCcccchhhhhhcC--ceeeccccc-----ccCCCCCcceeeeeccCCHHHHHHHHHHHHHHHHHH Confidence 5554444 33222 222222222110 000000000 011233445555554455556777778888999999 Q ss_pred hcCChHHhccccccccccccHHH----------HHHHHHHHHHHHHHHHHHHHHHhhCccceecc--ccccccCCC Q lcl|Aclame:pro 281 HRIPFQLMGGKPENVGSLGDIEK----------VAKVFVRNELIPLQDRIREINGWIGQEVIRFK--NYSLDTDNG 344 (344) Q Consensus 281 fgVPp~llG~~~~~~~~~~n~e~----------~~~~f~~~~l~P~~~~ie~ln~~L~~~~irf~--~y~l~~d~g 344 (344) -++|....+-..++ .++..++- ..+..+...|.-+++.+..+-...+. ...++ ...+.|+.. T Consensus 347 s~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~-~~~~d~~~i~v~f~~~ 420 (501) T protein:vir:27 347 TNIPDMSDTNFSGN-TSGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVNE-FKDFDESLLKITFTPN 420 (501) T ss_pred hCCcccCccccccC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccccccccceEEeCCC Confidence 99997544322111 11111110 01112222222222222221111111 11222 234556665 No 163 >protein:vir:96494 Length: 501 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238488;genbank:gi:66391764;genbank:GeneID:5176916 Probab=88.50 E-value=0.032 Score=28.79 Aligned_cols=303 Identities=12% Similarity=0.028 Sum_probs=112.9 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) ..+.+.............+-.++ +..|. ..+.+ ...+-.+..|+.+..- ...... .+ . T Consensus 67 ~g~~~~i~~~~~~~~~~~~~~ri-~~n~~--------k~Ivd----~~~~yl~g~p~~~~~~-----~~~~~~-~~---~ 124 (501) T protein:vir:96 67 RGENHDVLKSGRRKDNEMADKRA-VHNYG--------RMISK----FKTGYLAGNPIRVEYD-----DNDDNS-QN---D 124 (501) T ss_pred cCCCCcccCccccCcccccccee-ecchH--------HHHHH----HHhhhhcccCeeEeeC-----Cccchh-HH---H Confidence 11111000000000000000000 00000 00000 0011111222221100 000000 00 0 Q ss_pred hhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---------eeEEEcC--C Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPS--F 149 (344) Q Consensus 81 n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~~~~~~--~ 149 (344) ..+-..+..|.+ ...+..++.+.+.+|.||+.+.++..|.+ .+..++|..+.+..+.. ++|.... + T Consensus 125 ~~l~~~~~~n~~--~~~~~~~~~~~~~~G~a~~~v~~dedg~~-~i~~~~p~~~~~v~d~~~~~~~~~~v~~~~~~~~~~ 201 (501) T protein:vir:96 125 DAIKRIGRINDL--DSLNRTLIRDLSQTGRAYEVIYRSEYDET-RIKRLSPLETFVIYDNSLEDNSIAAVRYYNRGTLQS 201 (501) T ss_pred HHHHHHHHhcCH--HHHHHHHHHHHhhcCeEEEEEEEcCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEEeecCCC Confidence 001111222322 23466778899999999999999888864 46666766554433221 1121111 0 Q ss_pred ce-EE-EEeccc------------------------EEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccC Q lcl|Aclame:pro 150 NE-PT-AFAPGS------------------------VFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGA 203 (344) Q Consensus 150 ~~-~~-~~~~~e------------------------Iih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~ 203 (344) +. .. .+.++. |++++. ...|.|.+......++.-..+..-..+.+...+ T Consensus 202 ~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----n~~g~sd~e~v~~liDa~d~~~s~~~~~~~~~~ 276 (501) T protein:vir:96 202 AKDVVEIYTDEHIYTLDASDDFNEISVTTHAFGTVPITEYLN-----NIDGIGDYETELYLIDLYDSAESDTANHMSDMA 276 (501) T ss_pred cEEEEEEEcCCcEEEEeeCCCceeccccccCCCccceEEecC-----CccCCCchhhhHHHHHHHHHHHHHHHHHHHHhc Confidence 10 00 111222 344432 125778777766666655544444455555555 Q ss_pred CCceEEEecCCCCC--HHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHh Q lcl|Aclame:pro 204 HAGYIMYVTDAVQD--RNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAH 281 (344) Q Consensus 204 ~p~gil~~~~~~~~--~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f 281 (344) .|-.++ ++.... ++....++. .. .-+...... +.+...+.++.-+........+.+..+.-++.|...- T Consensus 277 ~~~l~i--~G~~~~~~~~~~~~~~~----~~-~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s 347 (501) T protein:vir:96 277 DAILAI--YGDLALPKGMQASDMKR----TR-LMQLKPPKS--ADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDIHIFT 347 (501) T ss_pred Cceeee--ecccccCcccchhhhhh----cC-eeeeccccc--ccccccCcceeeEeccCCHHHHHHHHHHHHHHHHHHh Confidence 565444 332221 122222211 11 000000000 1112234444444444445567777788889999999 Q ss_pred cCChHHhccccccccccccHHH----------HHHHHHHHHHHHHHHHHHHHHHhhCccceec--cccccccCCC Q lcl|Aclame:pro 282 RIPFQLMGGKPENVGSLGDIEK----------VAKVFVRNELIPLQDRIREINGWIGQEVIRF--KNYSLDTDNG 344 (344) Q Consensus 282 gVPp~llG~~~~~~~~~~n~e~----------~~~~f~~~~l~P~~~~ie~ln~~L~~~~irf--~~y~l~~d~g 344 (344) ++|....+...++ .++..++- ..+..+...|+-+++.+..+-...+. ...+ ....+.|... T Consensus 348 ~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~-~~~~d~~~i~i~f~~~ 420 (501) T protein:vir:96 348 NTPDMSDTNFSGN-TSGEALKYKLFGLDQDRVDTQSQFTKGLKRRYRLAARIGSLVNE-FKDFDESLLKITFTPN 420 (501) T ss_pred CCcccCccccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccccccccceEEeCCC Confidence 9997655432211 11111110 01112222222222222221111111 1122 2335566666 No 164 >protein:vir:101541 Length: 694 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958122;genbank:gi:41057668;genbank:GeneID:2716798 Probab=88.29 E-value=0.033 Score=28.69 Aligned_cols=314 Identities=14% Similarity=0.150 Sum_probs=121.6 Q ss_pred CCCCCCCCCCcch-----------------hhcccccc-ce-------eEEEc------CCceeccCcchhhhhhhhhc- Q lcl|Aclame:pro 1 MSKKKGKTPQPAA-----------------KTMTASAP-KM-------EAFTF------GEPVPVLDRRDILDYVECIS- 48 (344) Q Consensus 1 m~~~~~~~~~~~~-----------------~~~~~~~~-~~-------~~f~~------~~p~~~~~~~~~~~~~~~~~- 48 (344) ||++..|+++.-+ .+...+++ .+ .+++- -+|.|.+. +...++... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 77 (694) T protein:vir:10 1 MSRRNAKKRTQLARTGRRPEVAKAAALAAAATIATAAAQPVPADFARRGALNALDAAPVAEPSPSLR---LARQFEVDVS 77 (694) T ss_pred CCccchhhHHHHhhcCCCcchhhhhhhhhhhhhhhcCCCcccCCccccccchhhcccccCCCCcchh---hhhhcccccc Confidence 9988755433211 11101111 11 01111 12222111 111111100 Q ss_pred ----------------cchhhhccccHH---------HHHHHHhhhhhhhhhhhhcchhhHHhh--hc------------ Q lcl|Aclame:pro 49 ----------------NGRWYEPPVSFT---------GLAKSLRAAVHHSSPIYVKRNILASTF--IP------------ 89 (344) Q Consensus 49 ----------------~~~~~~~p~~~~---------~l~~~~~~~~~~~~~i~~k~n~~~~~~--~p------------ 89 (344) |+.-+ --++++ .|+.+..... +.++..+.... ++ T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~F~Gy~~la~laQ~~e------yr~~~~~ia~e~~R~w~~~~~~~~e~~ 150 (694) T protein:vir:10 78 NYTPRERRAASYALDFNGTSM-DALSFVTSSGFPGFPTLVLLAQLPE------YRAMHEVLADECIRTWGEAIGGTKEKA 150 (694) T ss_pred CCCccccchhhhhhccCcccc-cchhhhhccCcchHHHHHHHhhccc------hhhHHHHHHHHhhcccceeccccchhh Confidence 11000 000000 0111111000 00111110000 00 Q ss_pred ---------C--CCCC----------------HHHHHHHHHHHHhcCCceEEEeeCC-----------------CCceEE Q lcl|Aclame:pro 90 ---------H--PWLS----------------QQDFSRFVLDFLVFGNAFLEKRYST-----------------TGKVIR 125 (344) Q Consensus 90 ---------n--p~~~----------------~~~~~~~~~d~ll~Gnay~~~~r~~-----------------~G~~~~ 125 (344) | +... +.-++..+..--+||-+.+++.-.+ .|.... T Consensus 151 ~~~g~~~~~~~~~~~d~dqi~~L~~e~erl~V~~~l~eaik~aRlfGGa~~~i~I~gdd~~l~~PL~~~~~~I~kGslKG 230 (694) T protein:vir:10 151 DTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQG 230 (694) T ss_pred hhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccceEEEEEeecCccccccccccccccccCcceee Confidence 0 0000 1112222222346777765553222 234445 Q ss_pred EEEeCcceeeccccC-----------ceeEEEcCCceEEEEecccEEEecCCCC------CCCcccccchhhhHHHHHHH Q lcl|Aclame:pro 126 LETSPAKYTRRGVEE-----------DVYWWVPSFNEPTAFAPGSVFHLLEPDI------NQELYGLPEYLSALNSAWLN 188 (344) Q Consensus 126 L~pl~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~eIih~~~~~~------~~~~~G~sp~~~~~~~i~~~ 188 (344) |..+++.++.+.... -.||++. |. .+...-++.+..... .-.+.|+|-.+.+...+... T Consensus 231 l~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~--G~--~IH~SRL~~f~g~plPd~LKp~y~~~G~Sv~q~~~e~V~~~ 306 (694) T protein:vir:10 231 LRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--GT--EVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNW 306 (694) T ss_pred eEeecccccccchhhhccchhhccCCCceEEEe--ce--EEeeeeEEEecCCCchhhhhcccccCcccHHHHHHHHHHHH Confidence 777888777654321 1245553 22 233444433332211 11356999888888777766 Q ss_pred HHHHHHHHHHHHccCCCceEEEec--CCCCCHHHHHHHH---HHHHHhhcccccccccccCCCCccccceeeeccCChhH Q lcl|Aclame:pro 189 ESATLFRRKYYENGAHAGYIMYVT--DAVQDRNDIEMLR---ENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATK 263 (344) Q Consensus 189 ~~a~~~~~~~f~Ng~~p~gil~~~--~~~~~~e~~~~l~---~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d 263 (344) ...........+.- +..++ ++. ....+.... .+. +.++.++ +|.+ ++++.. +.-+|...+.+-. T Consensus 307 ~rT~~~v~~Li~~~-~v~~l-k~dla~~L~~g~~~-~l~~R~eli~~~R--sn~G-~~llDk----~~Eefeq~stslS- 375 (694) T protein:vir:10 307 LRTRQSVSDIVKQF-SVSGI-LMDLAQALMPGANV-DLSMRAELINRYR--DNRN-ILFLDK----ATEEFFQFNTPLS- 375 (694) T ss_pred HHHHhHHHHHHHhh-hhHHH-HHHHHHhhcChhHH-HHHHHHHHHHHhc--Cccc-eEEEec----CCcceEEEecccC- Confidence 65555555554432 22222 111 111122222 222 2233443 3444 444431 1233444443222 Q ss_pred HHHHHHHHhhHHHHHHHhcCChH-HhccccccccccccHHHHHHHHHH-------HHHHHHHHHHHH-HHHhhCccceec Q lcl|Aclame:pro 264 DDFFNIKKASAADLLDAHRIPFQ-LMGGKPENVGSLGDIEKVAKVFVR-------NELIPLQDRIRE-INGWIGQEVIRF 334 (344) Q Consensus 264 ~qf~e~~~~~~~~I~~~fgVPp~-llG~~~~~~~~~~n~e~~~~~f~~-------~~l~P~~~~ie~-ln~~L~~~~irf 334 (344) .+-++.....+.||.+-+||.. |+|..+.+= .++-|.-.+.||. ..|+|.++++-+ |-......+ . T Consensus 376 -GLddVi~qf~q~VAgaa~IPltkLfGqSPkGl--NATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~i-d- 450 (694) T protein:vir:10 376 -GLDALQAQAQEQMSAVSHIPLIKLLGITPTGL--NASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAV-D- 450 (694) T ss_pred -CHHHHHHHHHHHHHhhhcCchhhhhccCcccc--cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-C- Confidence 1223344456789999999986 668766432 1344545555554 456777766544 333322222 1 Q ss_pred cccccccCCC Q lcl|Aclame:pro 335 KNYSLDTDNG 344 (344) Q Consensus 335 ~~y~l~~d~g 344 (344) .++.++|..= T Consensus 451 p~i~~~fnPL 460 (694) T protein:vir:10 451 PSIKWQWNAL 460 (694) T ss_pred CcceEEeCCC Confidence 1233344322 No 165 >protein:vir:38 Length: 496 # NCBI annotation: putative portal protein # Family: family:all:898 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463464;swissprot:trembl:q9t1c0;genbank:gi:16798786;uniprot:Q9T1C0;genbank:GeneID:922383 Probab=88.10 E-value=0.034 Score=28.60 Aligned_cols=297 Identities=11% Similarity=0.118 Sum_probs=115.6 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) ..+++.....+. .. .+. .+.+=| ..+.+.. .+=...-|+.+.. . ..+. T Consensus 55 ~~~~~~~~~~~~-----~~-~~~--~~~n~~------k~i~~~~----a~~l~~~p~~i~~-------~-------d~~~ 102 (496) T protein:vir:38 55 WHNLNYEHNGNP-----VN-RRQ--LSMNLP------KVTAKYM----SKLLFNEKVKINI-------D-------DKAA 102 (496) T ss_pred hhcchhccCCCc-----cc-cce--eecchH------HHHHHHH----hhhhhCCcceEee-------C-------ChHH Confidence 111111100000 00 000 000000 0000000 0001111111100 0 0001 Q ss_pred hhhH-HhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeecc-----------------ccCce Q lcl|Aclame:pro 81 NILA-STFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRG-----------------VEEDV 142 (344) Q Consensus 81 n~~~-~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~-----------------~~~~~ 142 (344) +..+ ..+..|. ....+..++.+.+..|.+|+.+..|..|.+ .+..++|..+-+. .++.. T Consensus 103 ~e~l~~~~~~n~--f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~-~i~~v~~~~~~P~~~~~~~~~~~~f~~~~~~~~~~ 179 (496) T protein:vir:38 103 EEFVLNVLKTNG--FTKNMERYIEYGEAMGGFVIKVYHDGNKNV-KVSFATADCMYPLSNDSENVDECVIANSFHKNNKY 179 (496) T ss_pred HHHHHHHHhccC--HHHHHHHHHHHHhhhCcEEEEEEEcCCCcE-EEEEEcccceEEEEecCCcEEEEEEEEEEEeCCeE Confidence 1111 1112221 234567788899999999999998877764 3444444332210 11111 Q ss_pred eEEEc----CC------------------ceEEE-------Eec---------ccEEEecCCCCC----CCcccccchhh Q lcl|Aclame:pro 143 YWWVP----SF------------------NEPTA-------FAP---------GSVFHLLEPDIN----QELYGLPEYLS 180 (344) Q Consensus 143 ~~~~~----~~------------------~~~~~-------~~~---------~eIih~~~~~~~----~~~~G~sp~~~ 180 (344) |+.+. .+ |..+. +.+ --+.|++.+.++ ...+|+|.+.. T Consensus 180 y~~le~h~~~~~~~~I~~~~y~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~N~~~~~~p~G~Sd~~~ 259 (496) T protein:vir:38 180 YTLLEWNEWQGDVYTVTTELYQSDDPNELGTKVSLTLLFDDIEPVVPLPDFTRPTFIYIKPNIANNKNLTSPLGISVYAN 259 (496) T ss_pred EEEEEEEEEeCceEEEEEEEEecCCccccCccccccccccccccceeecCCCcceEEEecCCcccccccCCcCCCchHhh Confidence 11110 00 11100 000 012344443222 23569999988 Q ss_pred hHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhccc------ccccccccCCCCcccccee Q lcl|Aclame:pro 181 ALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRN------NFKNLFLYAPQGKADGIKI 254 (344) Q Consensus 181 ~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~------n~~~~~vl~~~~~~~g~~~ 254 (344) +...++.-..+..-..+-|+.| ++..+ +++..+ +.. ....|.. +-...........+++-.+ T Consensus 260 ~~~lid~ld~~~s~~~~~~~~~-~~~i~--v~~~~l-----~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (496) T protein:vir:38 260 ALDTLKTLDLMFDSYYQEFKLG-KKKVL--VPSSFV-----KTA----VNLDGSTTQYFDSTDEAFFLYQGDQDDNGKAI 327 (496) T ss_pred HHHHHHHHHHHHHHHHHHHhhc-cccee--cchHHh-----hcc----CCCCCccccCCCCccceEEEeecCCCcccccc Confidence 8777665544433333445554 33322 222111 000 0000000 0001111111111223345 Q ss_pred eeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHH----------HHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 255 IPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKV----------AKVFVRNELIPLQDRIREIN 324 (344) Q Consensus 255 ~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~----------~~~f~~~~l~P~~~~ie~ln 324 (344) +.++..-...++.+.-+...++|+...|+||+.+|...++..|...+... .+..++..|..+++.+.++- T Consensus 328 ~~~~~~i~~e~~~~~l~~~l~~i~~~~g~~~~~f~~~~~g~~tAtei~~~~~~l~~~~~~~~~~~~~~l~~l~~~il~~~ 407 (496) T protein:vir:38 328 KDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVVSEKSETYQTKNSHSQLIEQGIKEMIVSILEVG 407 (496) T ss_pred eeeccccCHHHHHHHHHHHHHHHHHhhCCChhhcCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 55555555677888888889999999999999999754332221111111 11222333444444333322 Q ss_pred Hh---hCccceeccccccccCCC Q lcl|Aclame:pro 325 GW---IGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 325 ~~---L~~~~irf~~y~l~~d~g 344 (344) .. +....+.-....+.|+++ T Consensus 408 ~~~~~~~g~~~~~~~i~v~f~d~ 430 (496) T protein:vir:38 408 KFIEAYSGEVVELDTITVDFDDS 430 (496) T ss_pred HHHHhhcCCCCCccceEEEeCCC Confidence 21 111121222346667777 No 166 >protein:vir:96366 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239644;genbank:gi:66395376;genbank:GeneID:5132842 Probab=87.98 E-value=0.035 Score=28.55 Aligned_cols=302 Identities=12% Similarity=0.026 Sum_probs=112.8 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) +.++..+.. ...+-.++ +..|.. .+.+ ...+-.+..|+.+.. -.... T Consensus 74 l~~~~~~~~------~~~~~~ki-~~n~~k--------~Iv~----~~~~yl~g~p~~~~~--------------~d~~~ 120 (511) T protein:vir:96 74 LVELTRRKE------EYMADNRV-AHDYAS--------YISD----FINGYFLGNPIQYQD--------------DDKDV 120 (511) T ss_pred ccccCcccc------cccCccee-ecchHH--------HHHH----HHhhhhcccCceeec--------------CchHH Confidence 111111000 00000000 001100 0000 001111222322210 00011 Q ss_pred hhhH-HhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---------eeEEEcC-- Q lcl|Aclame:pro 81 NILA-STFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPS-- 148 (344) Q Consensus 81 n~~~-~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~~~~~~-- 148 (344) +..+ ..+.-|.+ ......+..+.+.+|.||..+.++..|++ .+..++|..+-+..+.. +||.... T Consensus 121 ~~~l~~~~~~n~~--~~~~~~~~~~~~~~G~a~~~vy~d~dg~~-~i~~~~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~ 197 (511) T protein:vir:96 121 LEAIEAFNDLNDV--ESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFIIYDNTVERNSIAGVRYLRTKPID 197 (511) T ss_pred HHHHHHHHhhcCh--hHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEeeecc Confidence 1111 11222221 23455677889999999999999888864 56667776654432211 1222211 Q ss_pred C---ce---EEEEecccEEEecCCCC-------------------------CCCcccccchhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 149 F---NE---PTAFAPGSVFHLLEPDI-------------------------NQELYGLPEYLSALNSAWLNESATLFRRK 197 (344) Q Consensus 149 ~---~~---~~~~~~~eIih~~~~~~-------------------------~~~~~G~sp~~~~~~~i~~~~~a~~~~~~ 197 (344) + .. ...+.++.|.++...+. .+.-.|.|.+......++.-+.+..-..+ T Consensus 198 ~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~gd~e~v~~liDa~~~~~S~~~~ 277 (511) T protein:vir:96 198 KTDEDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTAN 277 (511) T ss_pred ccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccCcCcccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHH Confidence 0 00 01234444444321100 01124777777666666644443333333 Q ss_pred HHHccCCCceEEEecC-CCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHH Q lcl|Aclame:pro 198 YYENGAHAGYIMYVTD-AVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAAD 276 (344) Q Consensus 198 ~f~Ng~~p~gil~~~~-~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~ 276 (344) .....+.|-.++ ++ ...+.++.+..++...-. ..+ ...+.........+.+++.++.......+.+..+.-.+. T Consensus 278 ~~~~~~~~~lv~--~G~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~ 352 (511) T protein:vir:96 278 YMSDLNDAMLLI--KGNLNLDPVEVRKQKEANVLF--LEP-TVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSD 352 (511) T ss_pred HHHHhhcchhhe--ecCccCCchhhccccccccee--ccc-cceeccccccCCCCcceeEEeecCCHHHHHHHHHHHHHH Confidence 344444554444 33 223333332222111000 000 000000111112334444444444456677788888999 Q ss_pred HHHHhcCChHHhccccccccccccHHH----------HHHHHHHHHHHHHHHHHHHHHHhhCccce--eccccccccCCC Q lcl|Aclame:pro 277 LLDAHRIPFQLMGGKPENVGSLGDIEK----------VAKVFVRNELIPLQDRIREINGWIGQEVI--RFKNYSLDTDNG 344 (344) Q Consensus 277 I~~~fgVPp~llG~~~~~~~~~~n~e~----------~~~~f~~~~l~P~~~~ie~ln~~L~~~~i--rf~~y~l~~d~g 344 (344) |+..-++|....+-..++ .++-.++- ..+..+...|.-.++.|..+-...+..-. .+..-.+.|+.+ T Consensus 353 I~~~s~~P~~~~~~~~~n-~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~~~f~~~ 431 (511) T protein:vir:96 353 IHMFTNTPNMKDDNFSGT-QSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRN 431 (511) T ss_pred HHHHhCCccccccccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccceEEeCCC Confidence 999999997544322111 11111110 11112222222222222221111111101 122345667666 No 167 >protein:vir:78805 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285356;genbank:gi:148717884;genbank:GeneID:5246936 Probab=87.98 E-value=0.035 Score=28.55 Aligned_cols=302 Identities=12% Similarity=0.026 Sum_probs=112.8 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) +.++..+.. ...+-.++ +..|.. .+.+ ...+-.+..|+.+.. -.... T Consensus 74 l~~~~~~~~------~~~~~~ki-~~n~~k--------~Iv~----~~~~yl~g~p~~~~~--------------~d~~~ 120 (511) T protein:vir:78 74 LVELTRRKE------EYMADNRV-AHDYAS--------YISD----FINGYFLGNPIQYQD--------------DDKDV 120 (511) T ss_pred ccccCcccc------cccCccee-ecchHH--------HHHH----HHhhhhcccCceeec--------------CchHH Confidence 111111000 00000000 001100 0000 001111222322210 00011 Q ss_pred hhhH-HhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---------eeEEEcC-- Q lcl|Aclame:pro 81 NILA-STFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPS-- 148 (344) Q Consensus 81 n~~~-~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~~~~~~-- 148 (344) +..+ ..+.-|.+ ......+..+.+.+|.||..+.++..|++ .+..++|..+-+..+.. +||.... T Consensus 121 ~~~l~~~~~~n~~--~~~~~~~~~~~~~~G~a~~~vy~d~dg~~-~i~~~~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~ 197 (511) T protein:vir:78 121 LEAIEAFNDLNDV--ESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFIIYDNTVERNSIAGVRYLRTKPID 197 (511) T ss_pred HHHHHHHHhhcCh--hHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEeeecc Confidence 1111 11222221 23455677889999999999999888864 56667776654432211 1222211 Q ss_pred C---ce---EEEEecccEEEecCCCC-------------------------CCCcccccchhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 149 F---NE---PTAFAPGSVFHLLEPDI-------------------------NQELYGLPEYLSALNSAWLNESATLFRRK 197 (344) Q Consensus 149 ~---~~---~~~~~~~eIih~~~~~~-------------------------~~~~~G~sp~~~~~~~i~~~~~a~~~~~~ 197 (344) + .. ...+.++.|.++...+. .+.-.|.|.+......++.-+.+..-..+ T Consensus 198 ~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~gd~e~v~~liDa~~~~~S~~~~ 277 (511) T protein:vir:78 198 KTDEDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTAN 277 (511) T ss_pred ccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccCcCcccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHH Confidence 0 00 01234444444321100 01124777777666666644443333333 Q ss_pred HHHccCCCceEEEecC-CCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHH Q lcl|Aclame:pro 198 YYENGAHAGYIMYVTD-AVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAAD 276 (344) Q Consensus 198 ~f~Ng~~p~gil~~~~-~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~ 276 (344) .....+.|-.++ ++ ...+.++.+..++...-. ..+ ...+.........+.+++.++.......+.+..+.-.+. T Consensus 278 ~~~~~~~~~lv~--~G~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~ 352 (511) T protein:vir:78 278 YMSDLNDAMLLI--KGNLNLDPVEVRKQKEANVLF--LEP-TVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSD 352 (511) T ss_pred HHHHhhcchhhe--ecCccCCchhhccccccccee--ccc-cceeccccccCCCCcceeEEeecCCHHHHHHHHHHHHHH Confidence 344444554444 33 223333332222111000 000 000000111112334444444444456677788888999 Q ss_pred HHHHhcCChHHhccccccccccccHHH----------HHHHHHHHHHHHHHHHHHHHHHhhCccce--eccccccccCCC Q lcl|Aclame:pro 277 LLDAHRIPFQLMGGKPENVGSLGDIEK----------VAKVFVRNELIPLQDRIREINGWIGQEVI--RFKNYSLDTDNG 344 (344) Q Consensus 277 I~~~fgVPp~llG~~~~~~~~~~n~e~----------~~~~f~~~~l~P~~~~ie~ln~~L~~~~i--rf~~y~l~~d~g 344 (344) |+..-++|....+-..++ .++-.++- ..+..+...|.-.++.|..+-...+..-. .+..-.+.|+.+ T Consensus 353 I~~~s~~P~~~~~~~~~n-~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~~~f~~~ 431 (511) T protein:vir:78 353 IHMFTNTPNMKDDNFSGT-QSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRN 431 (511) T ss_pred HHHHhCCccccccccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccceEEeCCC Confidence 999999997544322111 11111110 11112222222222222221111111101 122345667666 No 168 >protein:vir:9306 Length: 511 # NCBI annotation: phi Mu50B-like protein # Family: family:all:125 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803284;genbank:gi:29028594;genbank:GeneID:1258040 Probab=87.85 E-value=0.036 Score=28.50 Aligned_cols=302 Identities=12% Similarity=0.027 Sum_probs=116.9 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) +.++..+... ..+-.++ +..|.. .+.+ ...+-.+..|+.+. +-..+. T Consensus 74 l~~~~~~~~~------~~~~~ki-~~n~~k--------~Iv~----~~~~yl~g~p~~~~--------------~~d~~~ 120 (511) T protein:vir:93 74 LVELTRRKEE------YMADNRV-AHDYAS--------YISD----FINGYFLGNPIQYQ--------------DDDKDV 120 (511) T ss_pred ccccCcCccc------ccCccee-ecchHH--------HHHH----HHhhhhcccCeeec--------------cCChHH Confidence 1111111000 0000000 000000 0000 01111122333221 000111 Q ss_pred hhhH-HhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccC----c-----eeEEEcC-- Q lcl|Aclame:pro 81 NILA-STFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEE----D-----VYWWVPS-- 148 (344) Q Consensus 81 n~~~-~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~----~-----~~~~~~~-- 148 (344) +..+ ..+..|.+ ......+..+.+.+|.||..+.++..|++ .+..++|..+-+..+. . +||.... T Consensus 121 ~~~l~~~~~~n~~--~~~~~~~~~~~~~~G~ay~~vy~de~~~~-~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~~ 197 (511) T protein:vir:93 121 LEVIEAFNDLNDV--ESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPID 197 (511) T ss_pred HHHHHHHHhhcCH--hHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEEeeecc Confidence 1111 11222221 23456677889999999999999888864 4666777666543221 1 1222210 Q ss_pred C---ce---EEEEecccEEEecCCCC-------------------------CCCcccccchhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 149 F---NE---PTAFAPGSVFHLLEPDI-------------------------NQELYGLPEYLSALNSAWLNESATLFRRK 197 (344) Q Consensus 149 ~---~~---~~~~~~~eIih~~~~~~-------------------------~~~~~G~sp~~~~~~~i~~~~~a~~~~~~ 197 (344) + +. ...+.++.|.+++.... .+.-.|.|.+......++.-..+..-..+ T Consensus 198 ~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~gd~e~v~~liDa~d~~~S~~~~ 277 (511) T protein:vir:93 198 KTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTAN 277 (511) T ss_pred ccccceEEEEEEEeCCcEEEEEecCCCccccccccccccccCCCccceEEecCCCCCCCchhhHHHHHHHHHHHHHHHHH Confidence 0 00 01233333433321100 01124777777766666655544444444 Q ss_pred HHHccCCCceEEEecC-CCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHH Q lcl|Aclame:pro 198 YYENGAHAGYIMYVTD-AVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAAD 276 (344) Q Consensus 198 ~f~Ng~~p~gil~~~~-~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~ 276 (344) .+...+.|-.++ ++ ...++++....++.-.-. ...+ ..........+.+.++..++.......+....+.-.+. T Consensus 278 ~~~~~~~~~lv~--~G~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~ 352 (511) T protein:vir:93 278 YMSDLNDAMLLI--KGNLNLDPVEVRKQKEANVLF-LEPT--VYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSD 352 (511) T ss_pred HHHHhhCcceee--ecCcccCchhhccccccccee-cccc--cccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHH Confidence 555555565444 33 222333332222111000 0000 00000111123345555555444556677888888999 Q ss_pred HHHHhcCChHHhccccccccccccHHH----------HHHHHHHHHHHHHHHHHHHHHHhhCccc--eeccccccccCCC Q lcl|Aclame:pro 277 LLDAHRIPFQLMGGKPENVGSLGDIEK----------VAKVFVRNELIPLQDRIREINGWIGQEV--IRFKNYSLDTDNG 344 (344) Q Consensus 277 I~~~fgVPp~llG~~~~~~~~~~n~e~----------~~~~f~~~~l~P~~~~ie~ln~~L~~~~--irf~~y~l~~d~g 344 (344) |...-++|..-.+-..++ .++-.++- ..+..+...|.-.++.|..+-...+... ..+....+.|+.. T Consensus 353 I~~~s~~P~~~~~~~~~n-~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~l~~~~~~~~~~d~~~i~~~f~~~ 431 (511) T protein:vir:93 353 IHMFTNTPNMKDDNFSGT-QSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWSIDANKDFNTVRYVYNRN 431 (511) T ss_pred HHHHhCCccccccccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccccceEEeCCC Confidence 999999997544322111 11111110 1111222223222222222111111110 1122345567666 No 169 >protein:vir:104082 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655593;genbank:gi:109392464;genbank:GeneID:4156950 Probab=87.69 E-value=0.037 Score=28.43 Aligned_cols=294 Identities=10% Similarity=0.031 Sum_probs=104.1 Q ss_pred CCCCCCCCCCcchhhcccccccee-EEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKME-AFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVK 79 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~-~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k 79 (344) -.+..-+. .+. .......... ...|.. -+.+ .+.+++ ..+| + ..+= ..+ T Consensus 40 ~G~~~i~~-~~~--~~~~~~~~~~~~~n~~~--~ivd--~~~~~l--~~~g-~-~~~~-------------------~~~ 89 (485) T protein:vir:10 40 EAERRPEA-IGV--TVPIQMQSLLAHVGYPR--LYVD--SIAERQ--AVEG-F-RFGD-------------------ADE 89 (485) T ss_pred hcCCcchh-cCC--CCChhhhhhhhhcCcHH--HHHH--HHHhhh--cccc-e-ecCC-------------------Cch Confidence 11111000 000 0000000000 000100 0000 001111 0010 0 0000 000 Q ss_pred chh-hHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCc-------eEEEEEeCcceeeccccCce--------e Q lcl|Aclame:pro 80 RNI-LASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGK-------VIRLETSPAKYTRRGVEEDV--------Y 143 (344) Q Consensus 80 ~n~-~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~-------~~~L~pl~~~~~~~~~~~~~--------~ 143 (344) .+. +-..+..|.+ ......+..+.+.+|.||+.+.++..+. ...+.+++|..+....+... + T Consensus 90 ~~~~~~~i~~~N~~--d~~~~~~~~~a~i~G~ay~~v~~~e~~~~~~~~~~~~~i~~~~p~~~~~~~D~~~~~~~~~~~~ 167 (485) T protein:vir:10 90 ADEELWQWWQANNL--DIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNTPIIRVEPPTRMYAEIDPRIGRVSKAIRV 167 (485) T ss_pred hHHHHHHHHHhcCH--hHHHHHHHHHHhhcCceEEEEeeCCcccccccCCCeeEEEEEccceeEEEEcCCCCceeEEEEE Confidence 000 0111122221 2345677888999999999998875432 22466677766543322110 0 Q ss_pred EEEcCCce-----------EE-----------------EEecccEEEecCCCCCCCcccccchhh----hHHHHHHHHHH Q lcl|Aclame:pro 144 WWVPSFNE-----------PT-----------------AFAPGSVFHLLEPDINQELYGLPEYLS----ALNSAWLNESA 191 (344) Q Consensus 144 ~~~~~~~~-----------~~-----------------~~~~~eIih~~~~~~~~~~~G~sp~~~----~~~~i~~~~~a 191 (344) +....++. .+ .|..=.|+|+.+..-..+.+|.|.+.- +..++....+- T Consensus 168 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~ 247 (485) T protein:vir:10 168 AYDAEGNEIQAATLYTPNDIFGWYRVENEWQEWFNNPHGLGVVPVVPIPNRTRLSDLYGTSEITPELRSMTDAAARILML 247 (485) T ss_pred EEeeCCCeEEEEEEEeCCeEEEEEEcCCceEEeccccCCCCcccEEEeccccccCCCCCccchhHHHHHHHHHHHHHHHH Confidence 00000110 01 111113566654322345678887643 33333332222 Q ss_pred HHHHHHHHHccCCCceEEEecCCCCCHHHHH--HHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHH Q lcl|Aclame:pro 192 TLFRRKYYENGAHAGYIMYVTDAVQDRNDIE--MLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNI 269 (344) Q Consensus 192 ~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~--~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~ 269 (344) ..-...||. .|--++ ++..+++...+ .-...|+.. .+.++.+ + ..+.++..+...+- .-|++. T Consensus 248 ~~~~~~~~a---~p~~~i--~G~~~~~~~~~~~~~~~~~~~~-----~~~i~~~-~---~~d~k~~q~~~~~~-~~~~~~ 312 (485) T protein:vir:10 248 MQATAELMG---VPQRLI--FGIKPEEIGVDPETGQTLFDAY-----LARILAF-E---DAEGKIQQFSAAEL-ANFTNA 312 (485) T ss_pred HHHHHHhhc---chHHHH--hcCCcccccccccccchhhhhc-----ccceecc-C---CCCceEEeecccch-HHHHHH Confidence 222223333 343222 22222111111 001112211 1234443 2 23455655544332 237888 Q ss_pred HHhhHHHHHHHhcCChHHhccccccccccccHHHHHH----------HHHHHHHHHHHHHHHHHHHhhCccceecc--cc Q lcl|Aclame:pro 270 KKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAK----------VFVRNELIPLQDRIREINGWIGQEVIRFK--NY 337 (344) Q Consensus 270 ~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~----------~f~~~~l~P~~~~ie~ln~~L~~~~irf~--~y 337 (344) .+....+|+.+=++|++.+|....+.+++..++.... ..+...|.-+++.+..+. +..-..++ .. T Consensus 313 l~~~i~~~~~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~l~~~~~---~~~~~~~~~~~i 389 (485) T protein:vir:10 313 LDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNSIFGGAWEEAMRLAYRMM---KGGDVPPDMLRM 389 (485) T ss_pred HHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCCcccceee Confidence 8888888999999999998865433222111111111 111122222222111111 11101111 12 Q ss_pred ccccCCC Q lcl|Aclame:pro 338 SLDTDNG 344 (344) Q Consensus 338 ~l~~d~g 344 (344) ++.|.+. T Consensus 390 ~v~w~~~ 396 (485) T protein:vir:10 390 ETVWRDP 396 (485) T ss_pred eEEecCC Confidence 2334333 No 170 >protein:vir:3964 Length: 453 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663672;genbank:gi:21716109;genbank:GeneID:951201 Probab=87.47 E-value=0.039 Score=28.34 Aligned_cols=286 Identities=9% Similarity=0.019 Sum_probs=109.1 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) ..++.+... ..-.++ ++.|-. .+.+. ..+-.+..|+.+. +-.... T Consensus 50 ~~~~~~~~~--------~~~~ki-~~n~~~--------~ivd~----~~~~l~g~~~~~~--------------~~d~~~ 94 (453) T protein:vir:39 50 DAEPTKDLW--------KPDNRL-TVNFTK--------YIVDT----FTGYFNGIPVKKS--------------HSDKET 94 (453) T ss_pred hcCCCcccc--------Ccccee-ecchHH--------HHHHH----HhhhhcccCceec--------------cCChHH Confidence 111111000 000010 000000 00000 0010111222110 000000 Q ss_pred hh-hHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCce------e--EEEcCCce Q lcl|Aclame:pro 81 NI-LASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV------Y--WWVPSFNE 151 (344) Q Consensus 81 n~-~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~~------~--~~~~~~~~ 151 (344) +. +...+..|.+ ...+..++.+.+.+|.||..+..+..|.+ .+..++|..+....+... + |....+.. T Consensus 95 ~~~l~~i~~~N~~--~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~ 171 (453) T protein:vir:39 95 LSKLQEFDNLNDM--EDEESELAKMACIYGRAFELLYQNEETQT-NVIYNTPENMFMVYDDTIKQEPLFAVRYGYDDDYK 171 (453) T ss_pred HHHHHHHHHhcCh--hHHHHHHHHHHhhcCeEEEEEEecCCCce-EEEEEcccceEEEecCCCCCeEEEEEEEEEeCCeE Confidence 11 1112223322 23456678899999999999999888865 344455554433221100 0 00001100 Q ss_pred E--EEEecc-------------------------cEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCC Q lcl|Aclame:pro 152 P--TAFAPG-------------------------SVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAH 204 (344) Q Consensus 152 ~--~~~~~~-------------------------eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~ 204 (344) . ..+.++ .|+++++ .-.|.|.+......++..+.+..-..+.....+. T Consensus 172 ~~~~~yt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~~~ 246 (453) T protein:vir:39 172 LYGEVYTKETTYALNGTMGFYNMTEQAPNPFDDLPVVEFYF-----NEERMSIFESVISLVNAFNKAISEKANDVDYFSD 246 (453) T ss_pred EEEEEEeCCeEEEEEecCCceeeecccccCCCceeEEEecC-----CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC Confidence 0 001111 2344432 1247777766665554433333333334445555 Q ss_pred CceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCC Q lcl|Aclame:pro 205 AGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIP 284 (344) Q Consensus 205 p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVP 284 (344) |-.++ ++..++++....++.. +.+.+....+...+.++..+........+.+..+...+.|...-++| T Consensus 247 p~~~~--~g~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~l~~~I~~~s~~p 314 (453) T protein:vir:39 247 QYLTF--LGAAVEEEDLKNIRSN----------RVINYYGESSEAKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMVA 314 (453) T ss_pred ceeee--ecCCCCchhhhhhhhc----------ceeeecCCCCCCCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCCc Confidence 65444 4555565554443321 11111111111122223333333345567777888889999999998 Q ss_pred hHHhccccccccccccHHH----------HHHHHHHHHHHHHHHHHHHHHHhhCccceeccccccccCCC Q lcl|Aclame:pro 285 FQLMGGKPENVGSLGDIEK----------VAKVFVRNELIPLQDRIREINGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 285 p~llG~~~~~~~~~~n~e~----------~~~~f~~~~l~P~~~~ie~ln~~L~~~~irf~~y~l~~d~g 344 (344) ..-.+.. +++++.-++. ..+..+...|..+++.+.++....+.. ..+..-.+.|... T Consensus 315 ~~~~~~~--gn~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~-~~~~~i~v~f~~~ 381 (453) T protein:vir:39 315 NISDESF--GSSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLYCELSTNVSNK-EAWKDIEYTFTRN 381 (453) T ss_pred ccccccc--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-cccccceEEeCCC Confidence 5322111 1111111111 111222333333333333322222221 1223334556555 No 171 >protein:vir:733 Length: 453 # NCBI annotation: minor structural protein 1 # Family: family:all:125 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108710;genbank:gi:13487832;genbank:GeneID:920851 Probab=87.36 E-value=0.039 Score=28.29 Aligned_cols=291 Identities=10% Similarity=-0.037 Sum_probs=111.7 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) ..++. +....+ ..++ +..|-. .+.+. ..+-.+..|+.+. +-.... T Consensus 50 ~~~~~-~~~~~~-------~~ki-~~n~~~--------~ivd~----~~~~l~g~~~~~~--------------~~d~~~ 94 (453) T protein:vir:73 50 SSQKA-KDSWKP-------DNRL-TNNFAK--------YIVDT----FVGYFNGIPIKKT--------------HDDKSV 94 (453) T ss_pred hcCCC-CCccCc-------ccee-ecchHH--------HHHHH----hhhhhcccCceee--------------cCChHH Confidence 11110 000000 0000 000000 00000 0011111122110 001111 Q ss_pred hhhHH-hhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc--------eeEEEcCCce Q lcl|Aclame:pro 81 NILAS-TFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--------VYWWVPSFNE 151 (344) Q Consensus 81 n~~~~-~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~--------~~~~~~~~~~ 151 (344) +..+. .+..|.+ ......++.+.+.+|.||..+..+..|.+ .+..++|..+-+..+.. .+|.....+. T Consensus 95 ~~~l~~~~~~n~~--~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~v~dd~~~~~~~~~i~~~~~~~~~ 171 (453) T protein:vir:73 95 LEAMQLFDNLNDM--EDEESELAKIACVYGRAYELMYQNESTES-EVIYCSPLNVFMVYDDSIKQKPLFAVYYGFDEEGN 171 (453) T ss_pred HHHHHHHHHhcCh--hHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEEeCCCCceeEEEEEEEEecCce Confidence 11111 1122221 23455677889999999999999888865 35556665543322111 0111111111 Q ss_pred E--EEEeccc-------------------------EEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCC Q lcl|Aclame:pro 152 P--TAFAPGS-------------------------VFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAH 204 (344) Q Consensus 152 ~--~~~~~~e-------------------------Iih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~ 204 (344) . ..+.++. |+++++ .-.|.|.+......++....+..-..+.....+. T Consensus 172 ~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~s~~~~v~~liDa~~~~~S~~~~~~~~~~~ 246 (453) T protein:vir:73 172 LSGTVYTLLETISITGKAGEVKFGESTYNVYSDLPIVEYNF-----NEERQSIFEPVHSLINSYNKVTSEKANDVEYFSD 246 (453) T ss_pred EEEEEEeCCeEEEEEecCCceEEccceeccCCceeEEEecC-----CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcc Confidence 1 1122222 233321 1246677766655554433333333333344445 Q ss_pred CceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCC Q lcl|Aclame:pro 205 AGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIP 284 (344) Q Consensus 205 p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVP 284 (344) |-.+ +++..++++....++..---.......+ ..+....+.++.-+.....+..+.+..+...+.|+..-++| T Consensus 247 ~~l~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p 319 (453) T protein:vir:73 247 QYLV--FLGAEVDEEDAKNIKDNRLINFFDKNSN-----GQGTNAAKVDVKFLDKPDSDVQTENLLNRLERSIFQFTMAA 319 (453) T ss_pred ceee--eecCCCCchhhhcccccccccccccccc-----cccccccCceeEEeeecCCHHHHHHHHHHHHHHHHHHhCCc Confidence 5444 4565566655555443211000000011 11111223334444444445667777888889999999998 Q ss_pred hHHhccccccccccccHHH----------HHHHHHHHHHHHHHHHHHHHHHhhCccceeccccccccCCC Q lcl|Aclame:pro 285 FQLMGGKPENVGSLGDIEK----------VAKVFVRNELIPLQDRIREINGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 285 p~llG~~~~~~~~~~n~e~----------~~~~f~~~~l~P~~~~ie~ln~~L~~~~irf~~y~l~~d~g 344 (344) ..--+ ..++.++..++. ..+..+...|.-+++.+..+....+.. ..+..-++.|+.. T Consensus 320 ~~~~~--~~gn~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~-~~~~~i~v~f~~~ 386 (453) T protein:vir:73 320 NISDE--NFGNSSGVALAYKLQAMSNLALSFQRKFQSALNRRYSLWSSLSTNASNK-DAWKDIEYTFTRN 386 (453) T ss_pred ccCcc--cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-cccccceEEeCCC Confidence 52211 101111111110 111222233333333333322222221 1334445666666 No 172 >protein:vir:105889 Length: 474 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004371;genbank:gi:122891826;genbank:GeneID:4712360 Probab=87.30 E-value=0.04 Score=28.27 Aligned_cols=285 Identities=8% Similarity=-0.022 Sum_probs=110.4 Q ss_pred CCCCC-------------CCCCCcchhhcccccc-----ceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHH Q lcl|Aclame:pro 1 MSKKK-------------GKTPQPAAKTMTASAP-----KMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGL 62 (344) Q Consensus 1 m~~~~-------------~~~~~~~~~~~~~~~~-----~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 62 (344) +.++. ++....+..-....-+ ....|-||.|..+.... +. T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~yl~g~pv~~~~~~----------~~------------ 108 (474) T protein:vir:10 51 FKRRPIEEKEDFETGGNVRRLDVSVNNKLNNSFDSEIVDTRVGYLHGVPVTYDLDE----------NA------------ 108 (474) T ss_pred hcchhhhhhhhhhhcccccccccCcccccccchHHHHHHhHhhheeccceeEeeCC----------CC------------ Confidence 11000 0000000000000000 00123333332221000 00 Q ss_pred HHHHhhhhhhhhhhhhcchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc- Q lcl|Aclame:pro 63 AKSLRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED- 141 (344) Q Consensus 63 ~~~~~~~~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~- 141 (344) ..+.... ..+-..+..|.+ ......++.+.+.+|.||..+..+..|++ .+..++|..+-+..+.. T Consensus 109 ----~~~e~~~-------~~l~~~~~~n~~--~~~~~~~~~~~~~~G~a~~~~~~d~~~~~-~~~~i~p~~~~~v~d~~~ 174 (474) T protein:vir:10 109 ----EKNEKLK-------KFITNFAIRNSV--DDEDSEIGKMAAICGYGARLAYIDTNGDI-RIKNIDPYNVIFVGDNIL 174 (474) T ss_pred ----cchHHHH-------HHHHHHHhhcCH--hHHHHHHHHHHhhcCeEEEEEEeCCCCee-EEEEEcccceEEEEcCCC Confidence 0000000 000011122211 23456677889999999999988888863 55556665543221111 Q ss_pred ------eeEEEcC--Cc------------eEEEEe------------------cccEEEecCCCCCCCcccccchhhhHH Q lcl|Aclame:pro 142 ------VYWWVPS--FN------------EPTAFA------------------PGSVFHLLEPDINQELYGLPEYLSALN 183 (344) Q Consensus 142 ------~~~~~~~--~~------------~~~~~~------------------~~eIih~~~~~~~~~~~G~sp~~~~~~ 183 (344) ++|.... ++ ..+.+. .=.|+++++ ...|.|.+..... T Consensus 175 ~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~sd~e~v~~ 249 (474) T protein:vir:10 175 EPTYSLRYFYEKDDDNGTDYVYAEFYDNAYYYVFRGEGIDALQEVGRYEHLFDYNPLFGVPN-----NKEMIGDAEKVIH 249 (474) T ss_pred ceEEEEEEEEEeeCCCceEEEEEEEEcCceEEEEeecCCCcccccccccCCCCccceEEecC-----CCCCCCchHHHHH Confidence 0111111 00 011111 112334332 2247777766665 Q ss_pred HHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhH Q lcl|Aclame:pro 184 SAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATK 263 (344) Q Consensus 184 ~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d 263 (344) .++.-..+..-..+.+...+.|-.+ +++..++++....++ ..+.+.+.+.+ .++++. ...... T Consensus 250 liDa~d~~~S~~~~~~~~~~~~~l~--i~g~~~~~~~~~~~~----------~~~~i~~~~~~---~~~~~l--~~~~~~ 312 (474) T protein:vir:10 250 LIDAYDLTMSDASSEISQTRLAYLV--LRGMGMSEEMIQETQ----------KSGAFELFDKD---MDVKYL--TKDVND 312 (474) T ss_pred HHHHHHHHHHHHHHHHHHhhcchhh--hccCCCCchhhhhhh----------hcceeEecCCC---CceeEE--eccCCH Confidence 5554444333333444444445434 455555554433322 12344444332 234443 333345 Q ss_pred HHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHH----------HHHHHHHHHHHHHHHHHHHHHHhhCccce- Q lcl|Aclame:pro 264 DDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEK----------VAKVFVRNELIPLQDRIREINGWIGQEVI- 332 (344) Q Consensus 264 ~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~----------~~~~f~~~~l~P~~~~ie~ln~~L~~~~i- 332 (344) ..+.+..+.-.+.|...-++|....+-..++ .++..++- ..+..+...|.-.++.|..+-...+.... T Consensus 313 ~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~~~~~~ 391 (474) T protein:vir:10 313 TMIENHLDRIEKNIMRFAKSVNFNSDEFNGN-VPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKGYNLDD 391 (474) T ss_pred HHHHHHHHHHHHHHHHHhCCccccccccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCc Confidence 5677778888899999999997543322111 11111111 11112223333332222221111122211 Q ss_pred -eccccccccCCC Q lcl|Aclame:pro 333 -RFKNYSLDTDNG 344 (344) Q Consensus 333 -rf~~y~l~~d~g 344 (344) ...+..+.|... T Consensus 392 ~~~~~i~~~f~~~ 404 (474) T protein:vir:10 392 DSYLNLIFKFTRN 404 (474) T ss_pred cccccceEEeCCC Confidence 122345566666 No 173 >protein:vir:94101 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240229;genbank:gi:66395892;genbank:GeneID:5133270 Probab=87.30 E-value=0.04 Score=28.27 Aligned_cols=285 Identities=8% Similarity=-0.022 Sum_probs=110.4 Q ss_pred CCCCC-------------CCCCCcchhhcccccc-----ceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHH Q lcl|Aclame:pro 1 MSKKK-------------GKTPQPAAKTMTASAP-----KMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGL 62 (344) Q Consensus 1 m~~~~-------------~~~~~~~~~~~~~~~~-----~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 62 (344) +.++. ++....+..-....-+ ....|-||.|..+.... +. T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~yl~g~pv~~~~~~----------~~------------ 108 (474) T protein:vir:94 51 FKRRPIEEKEDFETGGNVRRLDVSVNNKLNNSFDSEIVDTRVGYLHGVPVTYDLDE----------NA------------ 108 (474) T ss_pred hcchhhhhhhhhhhcccccccccCcccccccchHHHHHHhHhhheeccceeEeeCC----------CC------------ Confidence 11000 0000000000000000 00123333332221000 00 Q ss_pred HHHHhhhhhhhhhhhhcchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc- Q lcl|Aclame:pro 63 AKSLRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED- 141 (344) Q Consensus 63 ~~~~~~~~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~- 141 (344) ..+.... ..+-..+..|.+ ......++.+.+.+|.||..+..+..|++ .+..++|..+-+..+.. T Consensus 109 ----~~~e~~~-------~~l~~~~~~n~~--~~~~~~~~~~~~~~G~a~~~~~~d~~~~~-~~~~i~p~~~~~v~d~~~ 174 (474) T protein:vir:94 109 ----EKNEKLK-------KFITNFAIRNSV--DDEDSEIGKMAAICGYGARLAYIDTNGDI-RIKNIDPYNVIFVGDNIL 174 (474) T ss_pred ----cchHHHH-------HHHHHHHhhcCH--hHHHHHHHHHHhhcCeEEEEEEeCCCCee-EEEEEcccceEEEEcCCC Confidence 0000000 000011122211 23456677889999999999988888863 55556665543221111 Q ss_pred ------eeEEEcC--Cc------------eEEEEe------------------cccEEEecCCCCCCCcccccchhhhHH Q lcl|Aclame:pro 142 ------VYWWVPS--FN------------EPTAFA------------------PGSVFHLLEPDINQELYGLPEYLSALN 183 (344) Q Consensus 142 ------~~~~~~~--~~------------~~~~~~------------------~~eIih~~~~~~~~~~~G~sp~~~~~~ 183 (344) ++|.... ++ ..+.+. .=.|+++++ ...|.|.+..... T Consensus 175 ~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~sd~e~v~~ 249 (474) T protein:vir:94 175 EPTYSLRYFYEKDDDNGTDYVYAEFYDNAYYYVFRGEGIDALQEVGRYEHLFDYNPLFGVPN-----NKEMIGDAEKVIH 249 (474) T ss_pred ceEEEEEEEEEeeCCCceEEEEEEEEcCceEEEEeecCCCcccccccccCCCCccceEEecC-----CCCCCCchHHHHH Confidence 0111111 00 011111 112334332 2247777766665 Q ss_pred HHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhH Q lcl|Aclame:pro 184 SAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATK 263 (344) Q Consensus 184 ~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d 263 (344) .++.-..+..-..+.+...+.|-.+ +++..++++....++ ..+.+.+.+.+ .++++. ...... T Consensus 250 liDa~d~~~S~~~~~~~~~~~~~l~--i~g~~~~~~~~~~~~----------~~~~i~~~~~~---~~~~~l--~~~~~~ 312 (474) T protein:vir:94 250 LIDAYDLTMSDASSEISQTRLAYLV--LRGMGMSEEMIQETQ----------KSGAFELFDKD---MDVKYL--TKDVND 312 (474) T ss_pred HHHHHHHHHHHHHHHHHHhhcchhh--hccCCCCchhhhhhh----------hcceeEecCCC---CceeEE--eccCCH Confidence 5554444333333444444445434 455555554433322 12344444332 234443 333345 Q ss_pred HHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHH----------HHHHHHHHHHHHHHHHHHHHHHhhCccce- Q lcl|Aclame:pro 264 DDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEK----------VAKVFVRNELIPLQDRIREINGWIGQEVI- 332 (344) Q Consensus 264 ~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~----------~~~~f~~~~l~P~~~~ie~ln~~L~~~~i- 332 (344) ..+.+..+.-.+.|...-++|....+-..++ .++..++- ..+..+...|.-.++.|..+-...+.... T Consensus 313 ~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~~~~~~ 391 (474) T protein:vir:94 313 TMIENHLDRIEKNIMRFAKSVNFNSDEFNGN-VPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKGYNLDD 391 (474) T ss_pred HHHHHHHHHHHHHHHHHhCCccccccccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCc Confidence 5677778888899999999997543322111 11111111 11112223333332222221111122211 Q ss_pred -eccccccccCCC Q lcl|Aclame:pro 333 -RFKNYSLDTDNG 344 (344) Q Consensus 333 -rf~~y~l~~d~g 344 (344) ...+..+.|... T Consensus 392 ~~~~~i~~~f~~~ 404 (474) T protein:vir:94 392 DSYLNLIFKFTRN 404 (474) T ss_pred cccccceEEeCCC Confidence 122345566666 No 174 >protein:vir:4898 Length: 502 # NCBI annotation: gp502 # Family: family:all:125 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056676;genbank:gi:9635011;genbank:GeneID:1262662 Probab=86.49 E-value=0.045 Score=27.96 Aligned_cols=303 Identities=11% Similarity=0.040 Sum_probs=114.5 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) ..+.+.-...........+-.++ +..| ..++--...+-.+..|+.+..- ......... T Consensus 68 ~g~~~~i~~~~~~~~~~~~~~ki-~~n~------------~k~Ivd~~~~yl~g~p~~~~~~-----d~~~~~~~~---- 125 (502) T protein:vir:48 68 RGENHDVLKSGRRKDNEMADKRA-VHNY------------GRMISKFKTGYLAGNPIRVEYD-----DNEDNSQND---- 125 (502) T ss_pred cCCCcccccccccccccccccee-ecch------------HHHHHHHHhhhhcccCeeEecC-----CccchhHHH---- Confidence 11000000000000000000000 0000 0000000111112222222100 000000000 Q ss_pred hhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccC----c-----eeEEEcCC-- Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEE----D-----VYWWVPSF-- 149 (344) Q Consensus 81 n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~----~-----~~~~~~~~-- 149 (344) ..+-..+..|.+ ...+..++.+.+.+|.||+.+.++..|.+ .+..++|..+.+..+. . ++|..... T Consensus 126 ~~l~~~~~~N~~--~~~~~~~~~~~~~~G~a~~~v~~dedg~~-~i~~~~p~~~~~vydd~~~~~~~~~ir~~~~~~~~~ 202 (502) T protein:vir:48 126 DAIKRIGRINDI--DTHNRNLIRDLSQTGRAYEVIYRSEYDET-RIKRLSPLETFVIYDNSLEDNSIAAVRYYNRGTLQN 202 (502) T ss_pred HHHHHHHhhcCH--hHHHHHHHHHHhhcCeEEEEEEeCCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEEeecCC Confidence 001111222321 23566778899999999999999888864 4556666655432221 1 12221111 Q ss_pred ce--EEEEeccc------------------------EEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccC Q lcl|Aclame:pro 150 NE--PTAFAPGS------------------------VFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGA 203 (344) Q Consensus 150 ~~--~~~~~~~e------------------------Iih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~ 203 (344) +. ...+.++. |+++++ ...|.|.+......++.-..+..-..+.+...+ T Consensus 203 ~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~ 277 (502) T protein:vir:48 203 AKDVVEIYTNQHIYTLDASDSFNEISVTPHAFGTVPITEFLN-----NADGIGDYETELYLIDLYDSAESDTANHMSDMA 277 (502) T ss_pred cEEEEEEEeCCeEEEEEeCCceeeccceecCCCccceEEecC-----CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhc Confidence 10 01122222 233321 225778887777666665555555555666666 Q ss_pred CCceEEEecCCCC--CHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHh Q lcl|Aclame:pro 204 HAGYIMYVTDAVQ--DRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAH 281 (344) Q Consensus 204 ~p~gil~~~~~~~--~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f 281 (344) .|-.++. +... .++....+++.. .-+..... ...+...+.++..++.......+.+..+.-.++|+..- T Consensus 278 ~~~lv~~--g~~~~~~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~d~~~l~~~~~~~~~~~~~~~L~~~I~~~s 348 (502) T protein:vir:48 278 DAILAIY--GDLALPQGMQASDMKRTR-----LMQLKPPK--SADGKEGTVKAEYLTKSYDVSGAEAYKTRLNKDIHVFT 348 (502) T ss_pred Cceeeee--cCcccccccchhhhhhcc-----eeeccccc--cccccccCcceeEeeecCCHHHHHHHHHHHHHHHHHHh Confidence 6655543 3222 222222222111 00000000 01122234445445444444556667888889999999 Q ss_pred cCChHHhccccccccccccHHH----------HHHHHHHHHHHHHHHHHHHHHHhhCccceecc--ccccccCCC Q lcl|Aclame:pro 282 RIPFQLMGGKPENVGSLGDIEK----------VAKVFVRNELIPLQDRIREINGWIGQEVIRFK--NYSLDTDNG 344 (344) Q Consensus 282 gVPp~llG~~~~~~~~~~n~e~----------~~~~f~~~~l~P~~~~ie~ln~~L~~~~irf~--~y~l~~d~g 344 (344) ++|+...+...++ .++.-++- ..+..+...|.-+++.+..+-...+. ...|+ ...+.|... T Consensus 349 ~~p~~~~~~~~~n-~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~-~~~~d~~~i~i~f~~~ 421 (502) T protein:vir:48 349 NTPDMSDNHFSGN-ASGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVNE-FKDFDESRLKITFTPN 421 (502) T ss_pred CCCCcCccccccC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccccccccceEEeCCC Confidence 9997654432211 11111110 01122222222222222221111111 11222 345667666 No 175 >protein:vir:95113 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240817;genbank:gi:66394677;genbank:GeneID:5133907 Probab=85.90 E-value=0.049 Score=27.75 Aligned_cols=285 Identities=8% Similarity=0.024 Sum_probs=111.4 Q ss_pred CCC----CCCCCCCc-chhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhh Q lcl|Aclame:pro 1 MSK----KKGKTPQP-AAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSP 75 (344) Q Consensus 1 m~~----~~~~~~~~-~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~ 75 (344) +.+ +++++... .......+..++ +..|-. .+.+. ..+-.+..|+.+. + T Consensus 54 ~g~~~i~~r~~~~~~~~~~~~~~~~~ki-~~n~~~--------~Ivd~----~~~~l~g~p~~~~--------------~ 106 (474) T protein:vir:95 54 DKDNDIVKQMKKVDVYGNIDYDKPDWRI-TTNFHQ--------NLVDQ----KVSYVASKPVTYS--------------C 106 (474) T ss_pred cccCchhcccccccccccccccccccee-ccchHH--------HHHHH----HHhhhccCCceec--------------c Confidence 111 11111000 000000000000 000100 00000 0011112222211 0 Q ss_pred hhhcchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---------eeEEE Q lcl|Aclame:pro 76 IYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWV 146 (344) Q Consensus 76 i~~k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~~~~ 146 (344) -.......+..+..|.+ ...+..++.+.+.+|.+|..+.++..|++ .+..++|..+-+..+.. ++|.. T Consensus 107 ~d~~~~~~l~~~~~n~~--~~~~~e~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~~~i~~~~~ 183 (474) T protein:vir:95 107 EDESVLKIIHDVLDTRW--DNKLIDILTATSNKGIDWLQVYINENGEM-KLFRVPAEQAIPIWVDKEREELKSFIRYYKF 183 (474) T ss_pred CchHHHHHHHHHHhccH--HHHHHHHHHHHhhcCcEEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEE Confidence 01111112222222321 23455677889999999999988888864 45556665544322211 11111 Q ss_pred cCCceEEEEeccc-----------------------------------EEEecCCCCCCCcccccchhhhHHHHHHHHHH Q lcl|Aclame:pro 147 PSFNEPTAFAPGS-----------------------------------VFHLLEPDINQELYGLPEYLSALNSAWLNESA 191 (344) Q Consensus 147 ~~~~~~~~~~~~e-----------------------------------Iih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a 191 (344) ........+.++. |++++. ...|.|.+......++.-+.+ T Consensus 184 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~g~sd~e~v~~liDa~d~~ 258 (474) T protein:vir:95 184 NNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHIQSHFSNGNWGRVPFIAFKN-----NPEEVSDIWMYKSLIDAIDKR 258 (474) T ss_pred cCeeEEEEEeCCeEEEEEEcCCccccccccCcccccccccccCCCccceEeecC-----CCCCCCcHHHHHHHHHHHHHH Confidence 1111111122222 233322 134777776666666554443 Q ss_pred HHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHH Q lcl|Aclame:pro 192 TLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKK 271 (344) Q Consensus 192 ~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~ 271 (344) -.-..+.++..+.|-.+ +++...++ .+...... ...+++.+.++ .++++. ........+.+..+ T Consensus 259 ~S~~~~~~~~~~~p~lv--~~g~~~~~--~~~~~~~~-------~~~~~i~~~~~---~~~~~l--~~~~~~~~~~~~~~ 322 (474) T protein:vir:95 259 LSDAQNMFDESVELIYI--LKGYEGQD--LEEFMRGL-------KYYKAINVDGD---GGVETI--QVEVPVSSTKEYID 322 (474) T ss_pred HHHHHHHHHHhcCceee--eecCCccc--chhhhhhh-------hccceeeccCC---CceeEE--eecCCHHHHHHHHH Confidence 33334444555566444 44433322 11122221 12334444332 234443 33334566777788 Q ss_pred hhHHHHHHHhcCChHHhccccccccccccHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhCccceeccccc Q lcl|Aclame:pro 272 ASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAK-------------VFVRNELIPLQDRIREINGWIGQEVIRFKNYS 338 (344) Q Consensus 272 ~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~-------------~f~~~~l~P~~~~ie~ln~~L~~~~irf~~y~ 338 (344) ...+.|+..-++|..--+-. .++. +...... ..+...|.-+++.| ...+|... ...... T Consensus 323 ~l~~~i~~~s~~p~~~~~~~-~~n~---Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li---~~~~g~~~-d~~~i~ 394 (474) T protein:vir:95 323 LMRAYIMEFGQGVDFQTDKF-GSAP---SGIALKFLYGNLDLKANKLKNKATVAIQELIGFI---IDFNNLKM-DVKDIE 394 (474) T ss_pred HHHHHHHHHhCCcccccccc-cccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCCc-ccceee Confidence 88999999999996322111 1111 1111111 12222222222222 22334321 233345 Q ss_pred cccCCC Q lcl|Aclame:pro 339 LDTDNG 344 (344) Q Consensus 339 l~~d~g 344 (344) +.|+.+ T Consensus 395 v~f~~~ 400 (474) T protein:vir:95 395 ISFNFN 400 (474) T ss_pred EEeccC Confidence 566666 No 176 >protein:vir:96266 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240308;genbank:gi:66395972;genbank:GeneID:5133343 Probab=84.43 E-value=0.061 Score=27.26 Aligned_cols=287 Identities=9% Similarity=-0.006 Sum_probs=108.7 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) +.++.+..... ......+-.++ +..|-. .+.+. ..+-.+..|+.+.. -..+. T Consensus 60 ~~~~~~~~~~~-~~~~~~~~~ki-~~n~~k--------~Iv~~----~~~yl~g~p~~~~~--------------~~~~~ 111 (474) T protein:vir:96 60 NYQAYKQDLHG-NIDYTKPDWRI-TTNFHQ--------NLVDQ----KVSYVAGKPVTYAH--------------DDDKV 111 (474) T ss_pred ccccchhhhcc-ccccccccccc-ccchHH--------HHHHh----hhhhhcccCceecc--------------CChHH Confidence 22211100000 00000000000 000000 00000 01111223332210 01111 Q ss_pred hhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---------eeEEEcCCce Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPSFNE 151 (344) Q Consensus 81 n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~~~~~~~~~ 151 (344) ...+..+..|. .......++.+.+.+|.||..+.++..|.+ .+..++|..+-+..+.. ++|....... T Consensus 112 ~~~l~~~~~n~--~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~a~ir~~~~~~~~~ 188 (474) T protein:vir:96 112 LDVIHQVLDTR--WDNKLIDILTAASNKGIDWLQVYINEDGEL-KLFRVPAEQAIPIWTDKEREQLNAFIRIFTFNGETK 188 (474) T ss_pred HHHHHHHHhcc--HHHHHHHHHHHHhhCCeEEEEeeeCCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEeecCeeE Confidence 11122222221 123455677889999999999999888864 56666666554432211 1111111111 Q ss_pred EEEEecccE-----------------------------------EEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 152 PTAFAPGSV-----------------------------------FHLLEPDINQELYGLPEYLSALNSAWLNESATLFRR 196 (344) Q Consensus 152 ~~~~~~~eI-----------------------------------ih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~ 196 (344) ...+.++.| ++++. ...|.|.+......++.-+.+..-.. T Consensus 189 ~~vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~n-----n~~~~~d~e~v~~liDa~d~~~S~~~ 263 (474) T protein:vir:96 189 VEYWTAETVTYYVYENGGLIPDFYYGDEHIQTHFSTGSWERVPFIAFKN-----NPEEVSDIWMYKSFVDAIDKRLSDVQ 263 (474) T ss_pred EEEEeCCeEEEEEEcCCceeeccccccccccCcccccCCCccceEEecC-----CCCCCCchHHHHHHHHHHHHHHHHHH Confidence 111222222 23321 23466777666555555443333333 Q ss_pred HHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHH Q lcl|Aclame:pro 197 KYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAAD 276 (344) Q Consensus 197 ~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~ 276 (344) +.+...+.|-.+ +++... ++.......++ ..+++.+..+ .+++|.. .......+.+..+.-.+. T Consensus 264 ~~~~~~~~p~lv--~~g~~~--~~~~~~~~~~~-------~~~~i~~~~~---~~~~~l~--~~~~~~~~~~~~~~l~~~ 327 (474) T protein:vir:96 264 NMFDESVELIYI--LRGYEG--EDLSEFMEGLK-------YYKAINVSSD---GGVETIQ--VEVPVASTKEYLDMMRAY 327 (474) T ss_pred HHHHHhhcchhh--hcCCCc--ccccchhhhhh-------ccceeeccCC---CceeEEe--ccCCHHHHHHHHHHHHHH Confidence 344444445433 344322 22222222221 1234444332 2344433 333455677777888899 Q ss_pred HHHHhcCChHHhccccccccccccHHH----------HHHHHHHHHHHHHHHHHHHHHHhhCccceeccccccccCCC Q lcl|Aclame:pro 277 LLDAHRIPFQLMGGKPENVGSLGDIEK----------VAKVFVRNELIPLQDRIREINGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 277 I~~~fgVPp~llG~~~~~~~~~~n~e~----------~~~~f~~~~l~P~~~~ie~ln~~L~~~~irf~~y~l~~d~g 344 (344) |...-++|....+-.. ++.++-.++- ..+..+...|.-+++. +...++... .....++.|+.. T Consensus 328 I~~~s~~p~~~~~~~~-~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~---i~~~~g~~~-d~~~i~i~f~~~ 400 (474) T protein:vir:96 328 IVEFGQGVDFQTDKFG-SATSGIALKFLYTNLNLKANKLKNKANVALQELMQF---ILDFNKIKL-DAKEIEITFNFN 400 (474) T ss_pred HHHHhCCcCccccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCCCc-ccceeeEEecCC Confidence 9999999864321111 1111100110 0111122222222221 222233221 223345566666 No 177 >protein:vir:95899 Length: 474 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240382;genbank:gi:66396046;genbank:GeneID:5133410 Probab=84.43 E-value=0.061 Score=27.26 Aligned_cols=287 Identities=9% Similarity=-0.006 Sum_probs=108.7 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) +.++.+..... ......+-.++ +..|-. .+.+. ..+-.+..|+.+.. -..+. T Consensus 60 ~~~~~~~~~~~-~~~~~~~~~ki-~~n~~k--------~Iv~~----~~~yl~g~p~~~~~--------------~~~~~ 111 (474) T protein:vir:95 60 NYQAYKQDLHG-NIDYTKPDWRI-TTNFHQ--------NLVDQ----KVSYVAGKPVTYAH--------------DDDKV 111 (474) T ss_pred ccccchhhhcc-ccccccccccc-ccchHH--------HHHHh----hhhhhcccCceecc--------------CChHH Confidence 22211100000 00000000000 000000 00000 01111223332210 01111 Q ss_pred hhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---------eeEEEcCCce Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPSFNE 151 (344) Q Consensus 81 n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~~~~~~~~~ 151 (344) ...+..+..|. .......++.+.+.+|.||..+.++..|.+ .+..++|..+-+..+.. ++|....... T Consensus 112 ~~~l~~~~~n~--~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~a~ir~~~~~~~~~ 188 (474) T protein:vir:95 112 LDVIHQVLDTR--WDNKLIDILTAASNKGIDWLQVYINEDGEL-KLFRVPAEQAIPIWTDKEREQLNAFIRIFTFNGETK 188 (474) T ss_pred HHHHHHHHhcc--HHHHHHHHHHHHhhCCeEEEEeeeCCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEeecCeeE Confidence 11122222221 123455677889999999999999888864 56666666554432211 1111111111 Q ss_pred EEEEecccE-----------------------------------EEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 152 PTAFAPGSV-----------------------------------FHLLEPDINQELYGLPEYLSALNSAWLNESATLFRR 196 (344) Q Consensus 152 ~~~~~~~eI-----------------------------------ih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~ 196 (344) ...+.++.| ++++. ...|.|.+......++.-+.+..-.. T Consensus 189 ~~vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~n-----n~~~~~d~e~v~~liDa~d~~~S~~~ 263 (474) T protein:vir:95 189 VEYWTAETVTYYVYENGGLIPDFYYGDEHIQTHFSTGSWERVPFIAFKN-----NPEEVSDIWMYKSFVDAIDKRLSDVQ 263 (474) T ss_pred EEEEeCCeEEEEEEcCCceeeccccccccccCcccccCCCccceEEecC-----CCCCCCchHHHHHHHHHHHHHHHHHH Confidence 111222222 23321 23466777666555555443333333 Q ss_pred HHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHH Q lcl|Aclame:pro 197 KYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAAD 276 (344) Q Consensus 197 ~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~ 276 (344) +.+...+.|-.+ +++... ++.......++ ..+++.+..+ .+++|.. .......+.+..+.-.+. T Consensus 264 ~~~~~~~~p~lv--~~g~~~--~~~~~~~~~~~-------~~~~i~~~~~---~~~~~l~--~~~~~~~~~~~~~~l~~~ 327 (474) T protein:vir:95 264 NMFDESVELIYI--LRGYEG--EDLSEFMEGLK-------YYKAINVSSD---GGVETIQ--VEVPVASTKEYLDMMRAY 327 (474) T ss_pred HHHHHhhcchhh--hcCCCc--ccccchhhhhh-------ccceeeccCC---CceeEEe--ccCCHHHHHHHHHHHHHH Confidence 344444445433 344322 22222222221 1234444332 2344433 333455677777888899 Q ss_pred HHHHhcCChHHhccccccccccccHHH----------HHHHHHHHHHHHHHHHHHHHHHhhCccceeccccccccCCC Q lcl|Aclame:pro 277 LLDAHRIPFQLMGGKPENVGSLGDIEK----------VAKVFVRNELIPLQDRIREINGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 277 I~~~fgVPp~llG~~~~~~~~~~n~e~----------~~~~f~~~~l~P~~~~ie~ln~~L~~~~irf~~y~l~~d~g 344 (344) |...-++|....+-.. ++.++-.++- ..+..+...|.-+++. +...++... .....++.|+.. T Consensus 328 I~~~s~~p~~~~~~~~-~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~---i~~~~g~~~-d~~~i~i~f~~~ 400 (474) T protein:vir:95 328 IVEFGQGVDFQTDKFG-SATSGIALKFLYTNLNLKANKLKNKANVALQELMQF---ILDFNKIKL-DAKEIEITFNFN 400 (474) T ss_pred HHHHhCCcCccccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCCCc-ccceeeEEecCC Confidence 9999999864321111 1111100110 0111122222222221 222233221 223345566666 No 178 >protein:vir:79043 Length: 479 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110721;genbank:gi:134287338;genbank:GeneID:4955217 Probab=84.12 E-value=0.063 Score=27.17 Aligned_cols=308 Identities=7% Similarity=0.056 Sum_probs=112.3 Q ss_pred CCCCCCCCCCcchhhccccccce---eEEEcCCceecc-----Ccchhhhhhhhh---ccchhhhccccHHHHHHHHhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKM---EAFTFGEPVPVL-----DRRDILDYVECI---SNGRWYEPPVSFTGLAKSLRAA 69 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~---~~f~~~~p~~~~-----~~~~~~~~~~~~---~~~~~~~~p~~~~~l~~~~~~~ 69 (344) |.+.+..+ ...-..--.+...+ .....++..... .+.-...+.... ..+-.+..|+.+ T Consensus 32 ~~~~~~~~-~~~~~~yy~g~~~i~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~~Ivd~~~~~l~g~p~~~---------- 100 (479) T protein:vir:79 32 ILKHRPEK-YKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVF---------- 100 (479) T ss_pred HhhhhHHH-HHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhcCCcee---------- Confidence 22211000 00000000000000 000000000000 000000000000 000011122211 Q ss_pred hhhhhhhhhcchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc-------- Q lcl|Aclame:pro 70 VHHSSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED-------- 141 (344) Q Consensus 70 ~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~-------- 141 (344) ++-..+...+...+..|. .......++.+.+.+|.+|..+..+..|++ .+..++|..+.+..+.. T Consensus 101 ----~~~~~~~~~~~~~~~~n~--~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~~~ 173 (479) T protein:vir:79 101 ----NADDDNLTKLLNDLLGEE--FDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRELVAF 173 (479) T ss_pred ----ccCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEccceeEEEEeCCCCCceEEE Confidence 111111122223333332 133456677889999999999988887764 36666666554332211 Q ss_pred -eeEEEc-CCceE----EEEecccEEEecCCC------------------------------C---------CCCccccc Q lcl|Aclame:pro 142 -VYWWVP-SFNEP----TAFAPGSVFHLLEPD------------------------------I---------NQELYGLP 176 (344) Q Consensus 142 -~~~~~~-~~~~~----~~~~~~eIih~~~~~------------------------------~---------~~~~~G~s 176 (344) ++|... ..+.. ..+.++.|.|++.-. + .+.-.|.| T Consensus 174 ir~y~~~~~~~~~~~~~e~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~g~s 253 (479) T protein:vir:79 174 IRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVS 253 (479) T ss_pred EEEEEEeecCCceEEEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccccCCCcccEEEecCCCCCCc Confidence 122211 11110 012222333221100 0 01124777 Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeee Q lcl|Aclame:pro 177 EYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIP 256 (344) Q Consensus 177 p~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~p 256 (344) .+......++.-..+..-..+.+...+.|-.++ ++.... ..+.....+ ..++++.+.++ .++++.. T Consensus 254 d~~~v~~liDa~d~~~S~~~~~~~~~~~~~~v~--~g~~~~--~~~~~~~~~-------~~~~~i~~~~~---~~~~~l~ 319 (479) T protein:vir:79 254 DLTFYKSLIDIYDNNISTLADNLDEIQEVIYVL--KEYPGT--SLQEFIDNI-------RYYKSIKVDGG---GGVDKLE 319 (479) T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhCceeee--ecCCcc--ccccchhhh-------hhccceecCCC---CcceEEe Confidence 777766666555444444444556666665554 332111 111111111 12234444332 2345543 Q ss_pred ccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHH----------HHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 257 LSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEK----------VAKVFVRNELIPLQDRIREINGW 326 (344) Q Consensus 257 l~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~----------~~~~f~~~~l~P~~~~ie~ln~~ 326 (344) .. .....+.+..+.-.+.|...-++|..-.+.. ++.++..++- ..+..+...|.-+++.+..+-.. T Consensus 320 ~~--~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~--gn~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~ 395 (479) T protein:vir:79 320 IN--IPVEAKKELLDRLEKNIIIFGQGVNPESQNT--GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKI 395 (479) T ss_pred cc--CCHHHHHHHHHHHHHHHHHHhCccccccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 33 3455677777888899999999986533221 1111100100 11112222222222222221111 Q ss_pred hCccceeccccccccCCC Q lcl|Aclame:pro 327 IGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 327 L~~~~irf~~y~l~~d~g 344 (344) .+...+......+.|... T Consensus 396 ~~~~~~~~~~i~i~f~~~ 413 (479) T protein:vir:79 396 SGNKSYDYKTVQITFNHS 413 (479) T ss_pred cCCCccccccceEEeCCC Confidence 121112223345666666 No 179 >protein:vir:105292 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950666;genbank:gi:119967836;genbank:GeneID:4643171 Probab=84.10 E-value=0.063 Score=27.16 Aligned_cols=288 Identities=9% Similarity=0.026 Sum_probs=108.4 Q ss_pred CCC-----CCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhh Q lcl|Aclame:pro 1 MSK-----KKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSP 75 (344) Q Consensus 1 m~~-----~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~ 75 (344) ..+ ++.+....-......+-.++ +..|-. .+.+. ..+-.+..|+.+. + T Consensus 53 ~g~~~i~~~~~~~~~~~~~~~~~~~~ki-~~n~~~--------~ivd~----~~~~l~g~~~~~~--------------~ 105 (478) T protein:vir:10 53 NHHPDILDAPPKRDVNGDYDETKPDWRM-YTNYHQ--------NLVDQ----KVAYAVANPVTFG--------------V 105 (478) T ss_pred cCCCchhcccccccccccccccccccee-ccchHH--------HHHHH----HHhhhccCCeeee--------------c Confidence 211 11000000000000000000 000000 00000 0011112222211 0 Q ss_pred hhhcchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---------eeEEE Q lcl|Aclame:pro 76 IYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWV 146 (344) Q Consensus 76 i~~k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~~~~ 146 (344) -..+....+..+..|. .......++.+.+.+|.+|+.+..+..|++ .+..++|..+.+..+.. ++|.. T Consensus 106 ~~d~~~~~l~~~~~n~--~~~~~~~~~~~~~~~G~~~~~~~~d~~g~~-~~~~~~p~~~~~i~d~~~~~~~~~~v~~~~~ 182 (478) T protein:vir:10 106 DNDKALKQIQHTLNHK--WDDKLVDILTAASNKGIEWVQPYVDEEGEF-KTFRVPAEQAVPIWTNKERDELQAFIRVYEL 182 (478) T ss_pred CChHHHHHHHHHHhcC--HHHHHHHHHHHHHhcCeEEEEEEecCCCee-EEEEEcccceEEEEcCCCCCceEEEEEEEEe Confidence 1111111122222232 134456677889999999999988888864 46666666554432211 11111 Q ss_pred cCCceEEEEecc---------------------------------------cEEEecCCCCCCCcccccchhhhHHHHHH Q lcl|Aclame:pro 147 PSFNEPTAFAPG---------------------------------------SVFHLLEPDINQELYGLPEYLSALNSAWL 187 (344) Q Consensus 147 ~~~~~~~~~~~~---------------------------------------eIih~~~~~~~~~~~G~sp~~~~~~~i~~ 187 (344) ........+.++ .|+|+++ ..+|.|.+......++. T Consensus 183 ~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~n-----~~~g~sd~~~v~~liDa 257 (478) T protein:vir:10 183 DGAERVEYWTKDDVTYYELKEGQLIPDFYRSDDHIQPHYYQGNKLMSWGRVPFIPFKN-----NPQEVSDLFMYKTIIDA 257 (478) T ss_pred cCceEEEEEeCCeEEEEEEcCCeeeccccccccccccceecccccccCCccceEEecc-----CCCCCCcHHHHHHHHHH Confidence 111111111122 2333332 23577777665555555 Q ss_pred HHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHH Q lcl|Aclame:pro 188 NESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFF 267 (344) Q Consensus 188 ~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~ 267 (344) -..+..-..+.++..+.|-. .+++...++ ....+..++. .+++.+.+ ....++++.. .......+. T Consensus 258 ~~~~~S~~~~~~~~~~~p~~--~~~g~~~~~--~~~~~~~~~~-------~~~~~~~~-~~~~~~~~l~--~~~~~~~~~ 323 (478) T protein:vir:10 258 LDKRLSDTQNTFDESVELIY--ILKGYEGED--MKDFMHNLKY-------YKAISVAG-ESGSGVDTIK--VEVPIDSVK 323 (478) T ss_pred HHHHHHHHHHHHHHhhCcee--eeecCCccc--cchhhhhhhh-------cceEEecC-CCCCcceEEe--ecCChHHHH Confidence 44443334444454555643 344433322 1111111111 12222211 1123344433 233456677 Q ss_pred HHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHHHHHH--------HHH----HHHhhCccceecc Q lcl|Aclame:pro 268 NIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDR--------IRE----INGWIGQEVIRFK 335 (344) Q Consensus 268 e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~--------ie~----ln~~L~~~~irf~ 335 (344) +..+...+.|...-++|..-.+-.. +|.......+.-..+.-.+.. |.+ +...++.. +.+. T Consensus 324 ~~~~~l~~~i~~~s~~p~~~~~~~~------~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~g~~-~~~~ 396 (478) T protein:vir:10 324 EYTKMLRDYIIEFGQGVDFQQDKFG------NSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYRLD-VKVQ 396 (478) T ss_pred HHHHHHHHHHHHHhCccccCccccc------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cccc Confidence 8888888999999999864322111 111111111111111111111 111 11222322 1233 Q ss_pred ccccccCCC Q lcl|Aclame:pro 336 NYSLDTDNG 344 (344) Q Consensus 336 ~y~l~~d~g 344 (344) ..++.|+.+ T Consensus 397 ~i~i~f~~~ 405 (478) T protein:vir:10 397 DIEITFNFN 405 (478) T ss_pred cceEEecCC Confidence 456667766 No 180 >protein:vir:103951 Length: 511 # NCBI annotation: phage portal protein # Family: family:all:125 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873988;genbank:gi:118430763;genbank:GeneID:4525445 Probab=83.96 E-value=0.064 Score=27.12 Aligned_cols=302 Identities=12% Similarity=0.042 Sum_probs=114.9 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) +.++..+... ..+-.++ +..|-. .+.+ ...+-.+..|+.+.. -.... T Consensus 74 ~~~~~~~~~~------~~~~~ki-~~n~~k--------~Iv~----~~~~yl~g~p~~~~~--------------~d~~~ 120 (511) T protein:vir:10 74 LVELTRRKEE------YMADNRV-AHDYAS--------YISD----FINGYFLGNPIQYQD--------------DDKDV 120 (511) T ss_pred ccccCccccc------ccCccee-ecchHH--------HHHH----HHhhhhcccCceeec--------------CchHH Confidence 1111110000 0000000 000000 0000 011111222332210 00011 Q ss_pred hhhHH-hhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---------eeEEEcC-- Q lcl|Aclame:pro 81 NILAS-TFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPS-- 148 (344) Q Consensus 81 n~~~~-~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~~~~~~-- 148 (344) +..+. .+..|.+ ......++.+.+.+|.||..+.++..|++ .+..++|..+-+..+.. +||.... T Consensus 121 ~~~l~~~~~~n~~--~~~~~~~~~~~~i~G~ay~~vy~dedg~~-~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~d 197 (511) T protein:vir:10 121 LEAIEAFNDLNDV--ESHNRSLGLDLSIYGKAYEIMIRNQDDET-RLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPID 197 (511) T ss_pred HHHHHHHHhhcCH--HHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEEeeecc Confidence 11111 1222221 23455677889999999999999888863 56666666554332211 1222110 Q ss_pred C---ce--E-EEEecccEEEecCCCC-------------------------CCCcccccchhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 149 F---NE--P-TAFAPGSVFHLLEPDI-------------------------NQELYGLPEYLSALNSAWLNESATLFRRK 197 (344) Q Consensus 149 ~---~~--~-~~~~~~eIih~~~~~~-------------------------~~~~~G~sp~~~~~~~i~~~~~a~~~~~~ 197 (344) + +. . ..+.++.|.++..... .+.-.|.|.+......++.-+.+..-..+ T Consensus 198 ~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~f~nn~~g~gd~e~v~~liDa~d~~~S~~~~ 277 (511) T protein:vir:10 198 KTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTAN 277 (511) T ss_pred cCccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCcceeEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHH Confidence 0 00 0 1223333333221000 00124777777766666654444433344 Q ss_pred HHHccCCCceEEEecC-CCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHH Q lcl|Aclame:pro 198 YYENGAHAGYIMYVTD-AVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAAD 276 (344) Q Consensus 198 ~f~Ng~~p~gil~~~~-~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~ 276 (344) .+...+.|-.++ ++ ...++++....++.-.-.. .. .........+.+.+.+++.++.......+....+...+. T Consensus 278 ~~~~~~~~~lv~--~g~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~ 352 (511) T protein:vir:10 278 YMSDLNDAMLLI--KGNLNLDPVEVRKQKEANVLFL--EP-TVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSD 352 (511) T ss_pred HHHHhhCceeee--eccccCCchhhccchhccceec--cc-ccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHH Confidence 455555565444 33 2233333332221110000 00 000000011123345555555555566677888888999 Q ss_pred HHHHhcCChHHhccccccccccccHH----------HHHHHHHHHHHHHHHHHHHHHHHhhCc-c-ceeccccccccCCC Q lcl|Aclame:pro 277 LLDAHRIPFQLMGGKPENVGSLGDIE----------KVAKVFVRNELIPLQDRIREINGWIGQ-E-VIRFKNYSLDTDNG 344 (344) Q Consensus 277 I~~~fgVPp~llG~~~~~~~~~~n~e----------~~~~~f~~~~l~P~~~~ie~ln~~L~~-~-~irf~~y~l~~d~g 344 (344) |+..-++|..-.+...++ .++-.++ ...+.++...|.=.++.+.++-...+. + ...+....+.|... T Consensus 353 I~~~s~~P~~~~~~~~~n-~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~i~f~~~ 431 (511) T protein:vir:10 353 IHMFTNTPNMKDDNFSGT-QSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRN 431 (511) T ss_pred HHHHhCCccccccccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccceeeEEeCCC Confidence 999999987543322111 1111110 011122222222222222221111111 0 01122345567666 No 181 >protein:vir:103219 Length: 201 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277473;genbank:gi:71834115;genbank:GeneID:3562330 Probab=83.71 E-value=0.029 Score=29.00 Aligned_cols=119 Identities=12% Similarity=0.121 Sum_probs=55.2 Q ss_pred EEEecC-C-CCCHHHHHHHHHHHHHhh-cccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCC Q lcl|Aclame:pro 208 IMYVTD-A-VQDRNDIEMLRENMVKSK-GRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIP 284 (344) Q Consensus 208 il~~~~-~-~~~~e~~~~l~~~~~~~~-g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVP 284 (344) |+++++ . .++.+ ..+++++++... .-++.+.+.+.. ..+.++.+..+.+.-++ ......+.||++-||| T Consensus 1 V~k~~~l~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~ld~---~~e~~e~~~~~lsGl~d----~l~~~~~~iaa~s~iP 72 (201) T protein:vir:10 1 MWKAKGLADLCDDS-DGAARLRLAQVDNNSGVGQAIGIDA---DSEEYNVLNSDIGGIDT----FLSQKFDRIVALSGIH 72 (201) T ss_pred CccchHHHHHhcCC-hHHHHHHHHHHHHhhhhhhhheeec---CCcceeeeecCcCChHH----HHHHHHHHHHhHhcCc Confidence 555543 1 11111 234555554321 112233333332 22445555555555443 3445668899999999 Q ss_pred hH-Hhccccccccccc-cHHHHHHHHHH-------HHHHHHHHHHHHHHHhhCccceeccccccccCCC Q lcl|Aclame:pro 285 FQ-LMGGKPENVGSLG-DIEKVAKVFVR-------NELIPLQDRIREINGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 285 p~-llG~~~~~~~~~~-n~e~~~~~f~~-------~~l~P~~~~ie~ln~~L~~~~irf~~y~l~~d~g 344 (344) .. +.|..++ +++ +-+...+.||. ..|+|.+.++-++ + .+-.++.++|..= T Consensus 73 ~t~LfG~sp~---Glnatge~d~~nyyd~i~~~Qe~~l~p~le~l~~~---~----~~~~~~~~~f~pL 131 (201) T protein:vir:10 73 EIILKGKNVG---GVSASQNTALETFYGYVDRKRKAELLPLLEFLLPF---I----VTEQEWSVEFNPL 131 (201) T ss_pred hhhhcCCCCc---cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh---h----cCCCCceEeeCCC Confidence 87 4566543 332 33444555554 3344444433321 1 1112344444443 No 182 >protein:vir:106639 Length: 481 # NCBI annotation: ORF003 # Family: family:all:125 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239490;genbank:gi:66395218;genbank:GeneID:4555793 Probab=83.23 E-value=0.07 Score=26.91 Aligned_cols=309 Identities=9% Similarity=0.024 Sum_probs=105.3 Q ss_pred CCCCCCCCCCcchhhccccc------cceeEEEcCC-c-eec-cCc-chhhhhhhhhccchhhhccccHHHHHHHHhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASA------PKMEAFTFGE-P-VPV-LDR-RDILDYVECISNGRWYEPPVSFTGLAKSLRAAV 70 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~------~~~~~f~~~~-p-~~~-~~~-~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 70 (344) +.++..+- .....--... +.-......+ | ..+ ++. ..+.+. ..+-.+..|+.+ T Consensus 43 ~~~~~~~~--~~~~~yY~g~~~~i~~~~~~~~~~~~~~~~ki~~n~~~~ivd~----~~~~l~g~~~~~----------- 105 (481) T protein:vir:10 43 QTEQVPRL--EMLESYYLNRNTDILAGERRLQKYGDKADHRAVHNYAKYVSRF----IVGYLTGNPITI----------- 105 (481) T ss_pred HHHHHHHH--HHHHHHhcCCCcccccCccccccccccccceeecchHHHHHHH----HHhhhccCCceE----------- Confidence 11110000 0000000000 0000000000 0 000 000 000000 000011111111 Q ss_pred hhhhhhhhcchh-hHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc-------- Q lcl|Aclame:pro 71 HHSSPIYVKRNI-LASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED-------- 141 (344) Q Consensus 71 ~~~~~i~~k~n~-~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~-------- 141 (344) .+-..+.+. +...+..|.+ ...+..++.+.+.+|.+|+.+..+..|++ .+..++|..+-+..+.. T Consensus 106 ---~~~d~~~~~~l~~~~~~n~~--~~~~~~~~~~~~~~G~~~~~~~~d~dg~~-~i~~~~p~~~~~v~d~~~~~~~~~~ 179 (481) T protein:vir:10 106 ---THQDNQTNDKIIELNDLNDA--DEVNSDLALNLSIYGRAYEIVYRDFEDRD-TFKVLDPKSTFVVYDQTLDKKVVAG 179 (481) T ss_pred ---ecCChhHHHHHHHHHHhcCh--hHHHHHHHHHHHhcCeEEEEEEeCCCCeE-EEEEEcccceEEEEcCCCCCceEEE Confidence 000011111 1111222322 24566788899999999999998888875 46666776554332211 Q ss_pred -eeEEEcCC-ceE----EEEecccEEEecCCC-----------C---------CCCcccccchhhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 142 -VYWWVPSF-NEP----TAFAPGSVFHLLEPD-----------I---------NQELYGLPEYLSALNSAWLNESATLFR 195 (344) Q Consensus 142 -~~~~~~~~-~~~----~~~~~~eIih~~~~~-----------~---------~~~~~G~sp~~~~~~~i~~~~~a~~~~ 195 (344) ++|..... +.. ..+.++.|.|+..-. + .+...|.|.+......++.......-. T Consensus 180 i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~~~~~~v~~lida~~~~~s~~ 259 (481) T protein:vir:10 180 VRYFEKQDKDKVPVQHVEVYTTDKIYYIEIKGGTYHRVEEVEHYYNDVPIIEYLNDQFKQGDFENVIALIDLYDSAQSDT 259 (481) T ss_pred EEEEEEeeCCCceEEEEEEEecCeEEEEEecCCceeecccccccCCceeEEEeecCCCCCCchhhHHHHHHHHHHHHHHH Confidence 11211111 100 112223332221100 0 012246666655444443322222222 Q ss_pred HHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHH Q lcl|Aclame:pro 196 RKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAA 275 (344) Q Consensus 196 ~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~ 275 (344) .+-+.-.+.|-.++. .....+++..+.++..-.. . -..+...... .++.++.-+........+.+..+.-++ T Consensus 260 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~l~~ 331 (481) T protein:vir:10 260 ANYMTDLNDAMLAII-GNVDLDSEDAKAFRDANMI-H---LEPGTNANGS---EGKAEVKYVYKQYDVAGVEAYKKRLQN 331 (481) T ss_pred HHHHHHhcCceeEee-cCcCCCccchhhhhhccce-e---ccccccccCC---CCCcceeEEeecCCHHHHHHHHHHHHH Confidence 222333344554443 1122333333333321100 0 0011111111 122233333333345667787888899 Q ss_pred HHHHHhcCChHHhccccccccccccHHHHHHHHHH---------HHHHHHHHHHHH-HHHhh---CccceeccccccccC Q lcl|Aclame:pro 276 DLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVR---------NELIPLQDRIRE-INGWI---GQEVIRFKNYSLDTD 342 (344) Q Consensus 276 ~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~---------~~l~P~~~~ie~-ln~~L---~~~~irf~~y~l~~d 342 (344) .|...-++|....|-..++ .+ .+.....+.. ..+..-++++-. +...+ +..........+.|. T Consensus 332 ~i~~~s~~p~~~~~~~~~n-~S---g~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~v~f~ 407 (481) T protein:vir:10 332 DIHKYTNTPDLNDEQFSGV-QS---GESMKYKLFGLEQVRAIKERLFKKGLMKRYKLLLNNVNLTGLKQHNYAELTITFT 407 (481) T ss_pred HHHHHhCCccccccccccc-cH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccceeeEEeC Confidence 9999999997665532211 11 1111111110 011111111111 11111 111112233466676 Q ss_pred CC Q lcl|Aclame:pro 343 NG 344 (344) Q Consensus 343 ~g 344 (344) +. T Consensus 408 ~~ 409 (481) T protein:vir:10 408 PN 409 (481) T ss_pred CC Confidence 66 No 183 >protein:vir:94805 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240531;genbank:gi:66396197;genbank:GeneID:5133585 Probab=82.18 E-value=0.079 Score=26.62 Aligned_cols=290 Identities=8% Similarity=0.020 Sum_probs=111.0 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) +.++++.-... ......+-.++ +..|.. .+.|. ..|-.+..|+.+. +-.... T Consensus 77 ~~~~~~~~~~~-~~~~~~~~~ri-~~n~~k--------~Ivd~----~~~yl~G~p~~~~--------------~~d~~~ 128 (492) T protein:vir:94 77 VKEPKPVDATG-AVDPLKPDDRM-ITNFHA--------NLVDQ----KVSYIVGKPIAFK--------------HTDDEV 128 (492) T ss_pred ccccccccccc-ccccccccccc-ccchHH--------HHHHH----HHhhhcccCceec--------------cCchHH Confidence 22211110000 00000000000 000000 00010 0111122222221 001111 Q ss_pred hhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---------eeEEEcCCce Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPSFNE 151 (344) Q Consensus 81 n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~~~~~~~~~ 151 (344) ...+..+..|.+ ......+..+.+.+|.+|..+..+..|++ .+..++|..+.+..+.. ++|....... T Consensus 129 ~~~l~~~~~n~~--~~~~~~~~~~a~~~G~a~~~v~~d~dg~~-~~~~~~p~~~~~v~d~~~~~~~~a~ir~~~~~~~~~ 205 (492) T protein:vir:94 129 VKRIDEVLGNRF--DDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETK 205 (492) T ss_pred HHHHHHHHhccH--HHHHHHHHHHHhhCCeEEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEeecccee Confidence 112222222322 23455677889999999999998888864 46667776654432211 1122111111 Q ss_pred EEEEecccEEEecCC---------------------CCC---------CCcccccchhhhHHHHHHHHHHHHHHHHHHHc Q lcl|Aclame:pro 152 PTAFAPGSVFHLLEP---------------------DIN---------QELYGLPEYLSALNSAWLNESATLFRRKYYEN 201 (344) Q Consensus 152 ~~~~~~~eIih~~~~---------------------~~~---------~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~N 201 (344) ...+.+..|.++... ++. +.-.|.|.+......++.-..+..-..+.+.. T Consensus 206 ~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~sd~e~v~~liDa~d~~~S~~~~~~~~ 285 (492) T protein:vir:94 206 VEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKD 285 (492) T ss_pred EEEEecCeEEEEEEecCeeeeccccccccccccccccCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH Confidence 111112222221100 000 11247777877666666655554444555566 Q ss_pred cCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHh Q lcl|Aclame:pro 202 GAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAH 281 (344) Q Consensus 202 g~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f 281 (344) .+.|-.++ ++. +.++....+..++. .+++.+..+ .++++.. .......+.+..+.-.+.|+..- T Consensus 286 ~~~p~lv~--~g~--~~~~~~~~~~~~~~-------~~~~~~~~~---~~~~~l~--~~~~~~~~~~~~~~l~~~I~~~s 349 (492) T protein:vir:94 286 SNELTYVL--KNY--DDQELPEFKRLLRY-------YGAIKVSDN---GGVDTIQ--VEVPVENSKKYLDELYQKIMLFG 349 (492) T ss_pred hcCceeee--ecC--CcccchhhHHHHhh-------ccceecCCC---CcceeEe--ccCCHHHHHHHHHHHHHHHHHHh Confidence 66665544 332 22222222322221 123333322 2344432 22334456666777788899999 Q ss_pred cCChHHhccccccccccccHHHHHHHHHHHHHHHHHHHH--------HH----HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 282 RIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRI--------RE----INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 282 gVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~i--------e~----ln~~L~~~~irf~~y~l~~d~g 344 (344) ++|..-.+-..++ . +.+. ..+.-..+.-.+... ++ +...++... .+....+.|+.. T Consensus 350 ~~p~~~~~~~~~n-~---Sg~A--l~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~-~~~~i~v~f~~~ 417 (492) T protein:vir:94 350 QAVDFSSDKFGSA-P---SGVA--LEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKG-EHKDVDISFNYN 417 (492) T ss_pred CCcCCCccccccC-c---hHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccceeeEEecCC Confidence 9986433211111 1 1111 111111111111111 11 112222211 234455666666 No 184 >protein:vir:107112 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950601;genbank:gi:119953681;genbank:GeneID:4643121 Probab=81.89 E-value=0.082 Score=26.55 Aligned_cols=291 Identities=9% Similarity=0.016 Sum_probs=107.5 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) +.++.+...... .....+-.++ ++.|.. .+.+- ..+-.+..|+.+. +-..+. T Consensus 59 ~~~~~~~~~~~~-~~~~~~~~ki-~~n~~k--------~ivd~----~~~yl~g~p~~~~--------------~~~~~~ 110 (478) T protein:vir:10 59 LDAPFKRDVNGD-YDETKPDWRM-YTNYHQ--------NLVDQ----KVAYAVANPVTFG--------------VDNDKA 110 (478) T ss_pred cccchhhhcccc-ccccccccee-ccchHH--------HHHHH----HhhhhcccCceee--------------cCChHH Confidence 222111100000 0000000000 000000 00000 0011112222210 001111 Q ss_pred hhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccC----c-----eeEEEcCCce Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEE----D-----VYWWVPSFNE 151 (344) Q Consensus 81 n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~----~-----~~~~~~~~~~ 151 (344) ...+..+..|.+ ......++.+.+.+|.+|..+..+..|++ .+..++|..+.+..+. . ++|....... T Consensus 111 ~~~l~~~~~n~~--~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~~~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~ 187 (478) T protein:vir:10 111 LKQIQHTLNHKW--DDKLVDILTAASNKGIEWVQPYVDEEGEF-KTFRVPAEQAVPIWTNKERDELQAFIRVYELDGAER 187 (478) T ss_pred HHHHHHHHhccH--HHHHHHHHHHHhhCCeEEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEeeeCceE Confidence 111111222221 23455667888999999999988887764 4666666655433221 1 1122111111 Q ss_pred EEEEecccEEEecCCC-------------------------C---------CCCcccccchhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 152 PTAFAPGSVFHLLEPD-------------------------I---------NQELYGLPEYLSALNSAWLNESATLFRRK 197 (344) Q Consensus 152 ~~~~~~~eIih~~~~~-------------------------~---------~~~~~G~sp~~~~~~~i~~~~~a~~~~~~ 197 (344) ...+.++.|.+++... + .+.-.|.|.+......++.-..+..-..+ T Consensus 188 ~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liDa~~~~~S~~~~ 267 (478) T protein:vir:10 188 VEYWTKDDVTFYELKEGQLIPDFYRSEDHIQPHYYQGNKLMSWGRVPFIPFKNNPQEVSDLFMYKTIIDALDKRLSDTQN 267 (478) T ss_pred EEEEeCCcEEEEEecCCeeeccccccccccccceecccccccCCcceEEEeccCCCCCCcHHHHHHHHHHHHHHHHHHHH Confidence 1112223332221100 0 01124677766655555544433333333 Q ss_pred HHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHH Q lcl|Aclame:pro 198 YYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADL 277 (344) Q Consensus 198 ~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I 277 (344) .+...+.|- +.+++...++ .......++. . +++.+.+ ....++++.. .......+.+..+.-.+.| T Consensus 268 ~~~~~~~~~--~~~~g~~~~~--~~~~~~~~~~------~-~~~~~~~-~~~~~~~~l~--~~~~~~~~~~~~~~l~~~I 333 (478) T protein:vir:10 268 TFDESVELI--YILKGYEGED--MKDFMHNLKY------Y-KAISVAG-ESGSGVDTIK--VEVPIDSVKEYTKMLRDYI 333 (478) T ss_pred HHHHhhCcc--eeeecCCccc--ccchhhhhhh------C-ceeEecC-CCCCcceEEe--ecCCHHHHHHHHHHHHHHH Confidence 334444453 3344433222 1111222211 1 2333321 1123444443 3334566778888889999 Q ss_pred HHHhcCChHHhccccccccccccHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhCccceeccccccccCCC Q lcl|Aclame:pro 278 LDAHRIPFQLMGGKPENVGSLGDIEKVAK-------------VFVRNELIPLQDRIREINGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 278 ~~~fgVPp~llG~~~~~~~~~~n~e~~~~-------------~f~~~~l~P~~~~ie~ln~~L~~~~irf~~y~l~~d~g 344 (344) ...-++|..-.+-.. ++. +...... ..+...|.-+++. +...++.+. ......+.|+.+ T Consensus 334 ~~~s~~p~~~~~~~~-~n~---Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~l---i~~~~~~~~-d~~~i~i~f~~~ 405 (478) T protein:vir:10 334 IEFGQGVDFQQDKFG-NSP---SGIALKFMYSNLDLKANKLKNKTLTALQELLQY---IIDFYRLDV-RVQDIEITFNFN 405 (478) T ss_pred HHHhCCcCcCccccc-cch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCCCc-ccccceEEeCCC Confidence 999999853221111 111 1111111 1111122111111 222233321 223455667777 No 185 >protein:vir:96240 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239567;genbank:gi:66395299;genbank:GeneID:5132789 Probab=81.70 E-value=0.083 Score=26.50 Aligned_cols=301 Identities=11% Similarity=0.030 Sum_probs=115.3 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) +.+++.+... ..+-.++ +..| ..++--...+-....|+.+. +-.... T Consensus 74 ~~~~~~~~~~------~~~~~ki-~~n~------------~k~Iv~~~~~yl~g~p~~~~--------------~~~~~~ 120 (511) T protein:vir:96 74 LVELTRRKEE------YMADNRV-AHDY------------ASYISDFINGYFLGNPIQYQ--------------DDDKDV 120 (511) T ss_pred ccccCcCccc------ccCccee-ecch------------HHHHHHHHHhhhccCCceee--------------cCchHH Confidence 2111111000 0000000 0000 00000001111112222221 000011 Q ss_pred hhhH-HhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---------eeEEEcC-- Q lcl|Aclame:pro 81 NILA-STFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPS-- 148 (344) Q Consensus 81 n~~~-~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~~~~~~-- 148 (344) +..+ ..+..|. .......++.+.+.+|.||..+.++..|+ +.+..++|..+-+..+.. +||.... T Consensus 121 ~~~l~~~~~~n~--~~~~~~~~~~~~~i~G~a~~~vy~ded~~-~~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~d 197 (511) T protein:vir:96 121 LEAIEAFNDLND--VESHNRSLGLDLSIYGKAYELMIRNQDDE-TRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPID 197 (511) T ss_pred HHHHHHHHhhcC--HHHHHHHHHHHHHhcCeeEEEEEeCCCCc-eEEEEEccceeEEEEcCCCCCceEEEEEEEEeeecc Confidence 1111 1122222 12345667788999999999999988775 456667776655432211 1222110 Q ss_pred C---ceE---EEEecccEEEecCCCC-------------------------CCCcccccchhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 149 F---NEP---TAFAPGSVFHLLEPDI-------------------------NQELYGLPEYLSALNSAWLNESATLFRRK 197 (344) Q Consensus 149 ~---~~~---~~~~~~eIih~~~~~~-------------------------~~~~~G~sp~~~~~~~i~~~~~a~~~~~~ 197 (344) + +.. ..+.++.|.++..-.. .+.-.|.|.+......++.-+.+..-..+ T Consensus 198 ~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~g~gd~e~v~~liDa~d~~~S~~~~ 277 (511) T protein:vir:96 198 KTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTAN 277 (511) T ss_pred ccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCCceeeEEecCCCCCCCchhhhHHHHHHHHHHHHHHHH Confidence 0 000 1223333333321000 01125777777776666654444444444 Q ss_pred HHHccCCCceEEEecC-CCCCHHHHHHHHHHHH-HhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHH Q lcl|Aclame:pro 198 YYENGAHAGYIMYVTD-AVQDRNDIEMLRENMV-KSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAA 275 (344) Q Consensus 198 ~f~Ng~~p~gil~~~~-~~~~~e~~~~l~~~~~-~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~ 275 (344) .+...+.|-.++ ++ ...+.++....++.-. ..... ............+.++..|........+.+..+...+ T Consensus 278 ~~~~~~~~~lv~--~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~ 351 (511) T protein:vir:96 278 YMSDLNDAMLLI--KGNLNLDPVEVRKQKEANVLFLEPT----VYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNS 351 (511) T ss_pred HHHHhhCceeee--ecCccCCchhhcccccccceecccc----cccccccccCCCCcceeEEeecCCHHHHHHHHHHHHH Confidence 455555565444 33 2233333222221100 00000 0000011111334445555544456667888888999 Q ss_pred HHHHHhcCChHHhccccccccccccHHH----------HHHHHHHHHHHHHHHHHHHHHHhhCcc--ceeccccccccCC Q lcl|Aclame:pro 276 DLLDAHRIPFQLMGGKPENVGSLGDIEK----------VAKVFVRNELIPLQDRIREINGWIGQE--VIRFKNYSLDTDN 343 (344) Q Consensus 276 ~I~~~fgVPp~llG~~~~~~~~~~n~e~----------~~~~f~~~~l~P~~~~ie~ln~~L~~~--~irf~~y~l~~d~ 343 (344) .|...-++|..-.+-..++ .++-.++- ..+..++..|.-.++.|.++-...+.. -..+....+.|+. T Consensus 352 ~I~~~s~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~~~f~~ 430 (511) T protein:vir:96 352 DIHMFTNTPNMKDDNFSGT-QSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWSIDANKDFNTVRYVYNR 430 (511) T ss_pred HHHHHhCCccccccccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccccceEEeCC Confidence 9999999998544322111 11111110 011122222222222222211111111 0112344566777 Q ss_pred C Q lcl|Aclame:pro 344 G 344 (344) Q Consensus 344 g 344 (344) + T Consensus 431 ~ 431 (511) T protein:vir:96 431 N 431 (511) T ss_pred C Confidence 6 No 186 >protein:vir:99781 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004303;genbank:gi:122891757;genbank:GeneID:4712336 Probab=81.64 E-value=0.084 Score=26.49 Aligned_cols=300 Identities=11% Similarity=0.034 Sum_probs=110.4 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) +.+++.+.. ...+-.++ +..| ..++--...+=.+..|+.+.. -..+. T Consensus 74 ~~~~~~~~~------~~~~~~ki-~~n~------------~k~Iv~~~~~yl~g~p~~~~~--------------~d~~~ 120 (511) T protein:vir:99 74 LVELTRRKE------EYMADNRV-AHDY------------ASYISDFINGYFLGNPIQYQD--------------DDKDV 120 (511) T ss_pred ccccCcccc------cccCccee-ecch------------HHHHHHHHHhhhcccCceeec--------------CchHH Confidence 111111100 00000000 0000 000000011111122222210 00111 Q ss_pred hhhHH-hhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---------eeEEEcC-- Q lcl|Aclame:pro 81 NILAS-TFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPS-- 148 (344) Q Consensus 81 n~~~~-~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~~~~~~-- 148 (344) +..+. .+.-|.+ ......++.+.+.+|.||..+.++..|+ +.+..++|..+-+..+.. +||.... T Consensus 121 ~~~l~~~~~~n~~--~~~~~~~~~~~~i~G~a~~~vy~ded~~-~~i~~~~p~~~~~vyd~~~~~~~~~~vr~~~~~~~~ 197 (511) T protein:vir:99 121 LEAIEAFNDLNDV--ESHNRSLGLDLSIYGKAYELMIRNQDDE-TRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPID 197 (511) T ss_pred HHHHHHHHhhcCH--hHHHHHHHHHHHhcCeeEEEEEeCCCCc-eEEEEEccceeEEEEcCCCCCceEEEEEEEEeeecc Confidence 11111 2222321 2345667788999999999999988886 356666776654432211 1222110 Q ss_pred C---ce---EEEEecccEEEecCCCC-------------------------CCCcccccchhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 149 F---NE---PTAFAPGSVFHLLEPDI-------------------------NQELYGLPEYLSALNSAWLNESATLFRRK 197 (344) Q Consensus 149 ~---~~---~~~~~~~eIih~~~~~~-------------------------~~~~~G~sp~~~~~~~i~~~~~a~~~~~~ 197 (344) + +. ...+.++.|.+++.... .+.-.|.|.+......++.-..+..-..+ T Consensus 198 ~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~ 277 (511) T protein:vir:99 198 KTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTAN 277 (511) T ss_pred cCccceEEEEEEEeCCcEEEEEecCCccccccccccccccCCCCccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHH Confidence 0 00 01233333433321100 00124677776666655543333333333 Q ss_pred HHHccCCCceEEEecC-CCCCHHHHHHHHHHHHHhhccccccccccc--CCCCccccceeeeccCChhHHHHHHHHHhhH Q lcl|Aclame:pro 198 YYENGAHAGYIMYVTD-AVQDRNDIEMLRENMVKSKGRNNFKNLFLY--APQGKADGIKIIPLSEVATKDDFFNIKKASA 274 (344) Q Consensus 198 ~f~Ng~~p~gil~~~~-~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl--~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~ 274 (344) .+...+.|-.++ ++ ...++++....++.- .-+....... .......+.+++.|+.......+.+..+... T Consensus 278 ~~~~~~~~~lv~--~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~ 350 (511) T protein:vir:99 278 YMSDLNDAMLLI--KGNLNLDPVEVRKQKEAN-----VLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLN 350 (511) T ss_pred HHHHhhchhhhh--ccCcccCchhhccccccc-----ceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHH Confidence 334334443333 33 223333332222110 0000000000 0111233455555555445566777888889 Q ss_pred HHHHHHhcCChHHhccccccccccccHHHHH----------HHHHHHHHHHHHHHHHHHHHhhCccce--eccccccccC Q lcl|Aclame:pro 275 ADLLDAHRIPFQLMGGKPENVGSLGDIEKVA----------KVFVRNELIPLQDRIREINGWIGQEVI--RFKNYSLDTD 342 (344) Q Consensus 275 ~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~----------~~f~~~~l~P~~~~ie~ln~~L~~~~i--rf~~y~l~~d 342 (344) +.|+..-++|....+-..++ .++..++-.. +..+...|.=.++.|..+-...+.... .+...++.|. T Consensus 351 ~~I~~~s~~P~~~~~~~~gn-~Sg~Alk~~~~~l~~ka~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~i~f~ 429 (511) T protein:vir:99 351 SDIHMFTNTPNMKDDNFSGT-QSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDVSKDFNTVRYVYN 429 (511) T ss_pred HHHHHHhCCccccccccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccceEEeC Confidence 99999999998544322111 1111111100 011111111111111111111111001 1223455676 Q ss_pred CC Q lcl|Aclame:pro 343 NG 344 (344) Q Consensus 343 ~g 344 (344) .+ T Consensus 430 ~~ 431 (511) T protein:vir:99 430 RN 431 (511) T ss_pred CC Confidence 66 No 187 >protein:vir:78537 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491582;genbank:gi:157786405;genbank:GeneID:5625689 Probab=81.53 E-value=0.085 Score=26.46 Aligned_cols=285 Identities=11% Similarity=0.087 Sum_probs=105.3 Q ss_pred cCc-chhhhhhhh---------hccchhhhc-------cccH-HHHHHHHhhhhhhhhhhhhcchhhHHhhhcCCCC--- Q lcl|Aclame:pro 35 LDR-RDILDYVEC---------ISNGRWYEP-------PVSF-TGLAKSLRAAVHHSSPIYVKRNILASTFIPHPWL--- 93 (344) Q Consensus 35 ~~~-~~~~~~~~~---------~~~~~~~~~-------p~~~-~~l~~~~~~~~~~~~~i~~k~n~~~~~~~pnp~~--- 93 (344) |++ .++...+.- ....+||.- +... ..+........+++-++......+ .++++. T Consensus 1 ~~t~~d~i~~L~~~~~~~~~r~~~~~~Yy~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l----~~~g~~~~~ 76 (480) T protein:vir:78 1 MTTYHEHVERLQGLLARDLPNLLEAEAYRNGTRRLKTIGIGAPPELAYLDVQPGWVATYLRTLSDRL----DIEGFRISE 76 (480) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcccccchhhhhhhhhcchHHHHHHHHHhhh----ccCceecCC Confidence 211 111111000 001122211 1110 111111011112222222211111 111110 Q ss_pred ---------------C-HHHHHHHHHHHHhcCCceEEEeeC------CCCceEEEEEeCcceeeccccCc---------e Q lcl|Aclame:pro 94 ---------------S-QQDFSRFVLDFLVFGNAFLEKRYS------TTGKVIRLETSPAKYTRRGVEED---------V 142 (344) Q Consensus 94 ---------------~-~~~~~~~~~d~ll~Gnay~~~~r~------~~G~~~~L~pl~~~~~~~~~~~~---------~ 142 (344) . ......+..+.+.+|.||+.+.++ ..|.+ .+..++|..+.+..+.. . T Consensus 77 d~~~~~~l~~i~~~N~~~~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~~~~-~i~~~~p~~~~~i~D~~~~~~~~~~i~ 155 (480) T protein:vir:78 77 DSEGLEELWNWWQANDLDEESVLGHDDSLTFGRAYITVSHPDVESGDPAGIP-LIRVESPLYMYAELDPRNTRRVTRAVR 155 (480) T ss_pred CchhHHHHHHHHHhcCHHHHHHHHHHHHhhcCceEEEeecCccccCCCCCee-EEEEEcccceEEEEcCCCccceEEEEE Confidence 0 122344567889999999988753 34443 46667766655433211 0 Q ss_pred eEEEcCC------------ceEEE---------------------EecccEEEecCCCCCCCcccccchhh-h---HHHH Q lcl|Aclame:pro 143 YWWVPSF------------NEPTA---------------------FAPGSVFHLLEPDINQELYGLPEYLS-A---LNSA 185 (344) Q Consensus 143 ~~~~~~~------------~~~~~---------------------~~~~eIih~~~~~~~~~~~G~sp~~~-~---~~~i 185 (344) +|....+ +..+. |..=.|+||.+..-.++.+|.|.+.- . ..++ T Consensus 156 ~~~~~d~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~n~~~~~~~~G~sdi~~~i~~l~Da~ 235 (480) T protein:vir:78 156 LYTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPVVPLTNDPRLGNRYGRSEISPELRKVTDAA 235 (480) T ss_pred EEEeecCCcceEEEEEEeCCeEEEEEecCCCcccccccccccccCCCCcceEEeecccccCCccCccchhHHHHHHHHHH Confidence 1110000 01111 11113456654332345678876643 2 3333 Q ss_pred HHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHH Q lcl|Aclame:pro 186 WLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDD 265 (344) Q Consensus 186 ~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~q 265 (344) ....+-..-...+| +.|--+ +++..+++...+.-...|.... +.++.+.+ ++.++..+..... .. T Consensus 236 ~~~~s~~~~~~~~~---a~p~~~--i~G~~~~~~~~~~~~~~~~~~~-----~~~~~~~~----~~~~~~~~~~~~~-~~ 300 (480) T protein:vir:78 236 SRTLMNLQSASQIL---GTPLRV--ISGVTTDELTNDGENTTLDIYY-----GRILTLAS----EAAKISEFKAAEL-RN 300 (480) T ss_pred HHHHHHHHHHHHhh---cchhhh--hhCCCccccccccccchhhhhh-----hhhccCCC----CCceEEecCccCH-HH Confidence 33222222222333 334323 3343322221111111222211 23333321 2355655554332 23 Q ss_pred HHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHHHHHHHH--------H----HHHhhCccc-e Q lcl|Aclame:pro 266 FFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIR--------E----INGWIGQEV-I 332 (344) Q Consensus 266 f~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie--------~----ln~~L~~~~-i 332 (344) |++..+..+.+|+.+=++|++.+|....+.+++ +.. .+....|.=.+.+.+ + +-..++.+. . T Consensus 301 ~~~~l~~~i~~~~~~~~~p~~~fg~~~~n~~Sg---~Al--~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~~~~~~~ 375 (480) T protein:vir:78 301 FAEEMEVFRKEAASITGLPPQYLSSSSENPASA---EAI--IATDSRIVKMAERKGRIFGGAWERAMRIAMQIMGREVTE 375 (480) T ss_pred HHHHHHHHHHHHhcccCCCHHHhccccCchhHH---HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc Confidence 888888899999999999999998643332221 111 111111111111111 1 111122221 1 Q ss_pred eccccccccCCC Q lcl|Aclame:pro 333 RFKNYSLDTDNG 344 (344) Q Consensus 333 rf~~y~l~~d~g 344 (344) .+...++.|.+. T Consensus 376 ~~~~i~v~w~~~ 387 (480) T protein:vir:78 376 EYTRLETVWRDP 387 (480) T ss_pred cceeeeEEecCC Confidence 122234444333 No 188 >protein:vir:5961 Length: 503 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690661;genbank:geneid:6329220;genbank:gi:22855055;interpro:IPR006428;uniprot:P54309;genbank:GeneID:955279 Probab=80.73 E-value=0.092 Score=26.26 Aligned_cols=297 Identities=9% Similarity=0.011 Sum_probs=107.0 Q ss_pred CCCCCCCCCCcchhhc--cccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTM--TASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYV 78 (344) Q Consensus 1 m~~~~~~~~~~~~~~~--~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~ 78 (344) ..++++.......... ...-.++ +..| ..++--...+-.+..|+.+. +-.. T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~ri-~~n~------------~~~ivd~~~~yl~g~~~~~~--------------~~d~ 112 (503) T protein:vir:59 60 EKKRRTYYDAAGQQLVDDTKTNNRT-SHAW------------HKLFVDQKTQYLVGEPVTFT--------------SDNK 112 (503) T ss_pred hhccchhccccccccccccccccee-ecch------------HHHHHHHHHhhhhcCCeeec--------------cCcH Confidence 1111110000000000 0000000 0000 00000000111112222211 0001 Q ss_pred cchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---------eeEEEcC- Q lcl|Aclame:pro 79 KRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPS- 148 (344) Q Consensus 79 k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~~~~~~- 148 (344) +....+..+..|.+ ...+..++.+.+.+|.+|+.+..+..|++ .+..++|..+-...+.. ++|.... T Consensus 113 ~~~~~l~~~~~n~~--~~~~~~~~~~~~~~G~~~~~v~~d~dg~~-~i~~~~p~~~~~i~d~~~~~~~~~~ir~~~~~~~ 189 (503) T protein:vir:59 113 TLLEYVNELADDDF--DDILNETVKNMSNKGIEYWHPFVDEEGEF-DYVIFPAEEMIVVYKDNTRRDILFALRYYSYKGI 189 (503) T ss_pred HHHHHHHHHHhcCH--HHHHHHHHHHHhhCCeEEEEEeecCCCce-EEEEEccceeEEEEeCCCCCceEEEEEEEEEecC Confidence 11112222233322 23455678889999999999999888874 46677776654332211 1222211 Q ss_pred Cce----EEEEecccEEEecCC-------------------------C-----C----CCCcccccchhhhHHHHHHHHH Q lcl|Aclame:pro 149 FNE----PTAFAPGSVFHLLEP-------------------------D-----I----NQELYGLPEYLSALNSAWLNES 190 (344) Q Consensus 149 ~~~----~~~~~~~eIih~~~~-------------------------~-----~----~~~~~G~sp~~~~~~~i~~~~~ 190 (344) .+. ...+.++.|.++..- . | .+.-.|.|.+..+...++.-+. T Consensus 190 ~~~~~~~~evy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPiv~~~nn~~~~sd~~~~~~liDa~d~ 269 (503) T protein:vir:59 190 MGEETQKAELYTDTHVYYYEKIDGVYQMDYSYGENNPRPHMTKGGQAIGWGRVPIIPFKNNEEMVSDLKFYKDLIDNYDS 269 (503) T ss_pred CCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccceeecceeccCCccceEEecCCCCCCcchhhhHHHHHHHHH Confidence 111 011222222222100 0 0 0122477766666555555443 Q ss_pred HHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHH Q lcl|Aclame:pro 191 ATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIK 270 (344) Q Consensus 191 a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~ 270 (344) +..-..+.+...+.|-.++ ++....+ .+.....+.. .+++.+..+ .++++... ......+.+.. T Consensus 270 ~~s~~~~~~~~~~~~~~v~--~g~~~~~--~~~~~~~~~~-------~~~~~~~~~---~~~~~l~~--~~~~~~~~~~~ 333 (503) T protein:vir:59 270 ITSSTMDSFSDFQQIVYVL--KNYDGEN--PKEFTANLRY-------HSVIKVSGD---GGVDTLRA--EIPVDSAAKEL 333 (503) T ss_pred HHHHHHHHHHHhcCCeeEe--ecCCccc--cchhhhhhhc-------ccceeccCC---CcceeEec--cCCHHHHHHHH Confidence 3333344445556664444 4432221 1111222211 123333332 23444333 33344556666 Q ss_pred HhhHHHHHHHhcCChHHhccccccccccccHH----------HHHHHHHHHHHHHHHHHHHHHHHhhCccc-eecccccc Q lcl|Aclame:pro 271 KASAADLLDAHRIPFQLMGGKPENVGSLGDIE----------KVAKVFVRNELIPLQDRIREINGWIGQEV-IRFKNYSL 339 (344) Q Consensus 271 ~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e----------~~~~~f~~~~l~P~~~~ie~ln~~L~~~~-irf~~y~l 339 (344) +.-.+.|...-++|..-.+... ++.++..++ +..+..+...|.-+++.+.++-...+... ....+..+ T Consensus 334 ~~l~~~i~~~s~~p~~~~~~~~-~~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~i~i 412 (503) T protein:vir:59 334 ERIQDELYKSAQAVDNSPETIG-GGATGPALENLYALLDLKANMAERKIRAGLRLFFWFFAEYLRNTGKGDFNPDKELTM 412 (503) T ss_pred HHHHHHHHHHhcccCCCccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccceeE Confidence 6667777777777743221111 111111111 01112222233222222222111111111 11123566 Q ss_pred ccCCC Q lcl|Aclame:pro 340 DTDNG 344 (344) Q Consensus 340 ~~d~g 344 (344) .|.++ T Consensus 413 ~f~~~ 417 (503) T protein:vir:59 413 TFTRT 417 (503) T ss_pred EeCCC Confidence 77777 No 189 >protein:vir:2341 Length: 488 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075278;genbank:gi:12657865;genbank:GeneID:920078 Probab=80.50 E-value=0.094 Score=26.21 Aligned_cols=298 Identities=11% Similarity=0.059 Sum_probs=102.7 Q ss_pred CcchhhccccccceeEEEcCCceeccCcchhhhhhh-hh--------ccchhhh-------ccccH-HHHHHHHhhhhhh Q lcl|Aclame:pro 10 QPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVE-CI--------SNGRWYE-------PPVSF-TGLAKSLRAAVHH 72 (344) Q Consensus 10 ~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~-~~--------~~~~~~~-------~p~~~-~~l~~~~~~~~~~ 72 (344) .+... .++-.++.+++. .+ .-.+||. .|... ..+....-...++ T Consensus 1 ~~~~~-------------------~~d~~~~i~~L~~~~~~~~~r~~~~~~Yy~g~~~i~~~~~~~~~~~~~~~~~~n~~ 61 (488) T protein:vir:23 1 MAETE-------------------SIDPEKLRDQLLDAFENKQNELKSSKAYYDAERRPDAIGLAVPLDMRKYLAHVGYP 61 (488) T ss_pred CCccc-------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcCcccchhhhhhhhhcchH Confidence 11111 111111111110 00 0112221 11111 1111111112222 Q ss_pred hhhhhhcchhhH--HhhhcCC----CC-------------------CHHHHHHHHHHHHhcCCceEEEeeCC-------- Q lcl|Aclame:pro 73 SSPIYVKRNILA--STFIPHP----WL-------------------SQQDFSRFVLDFLVFGNAFLEKRYST-------- 119 (344) Q Consensus 73 ~~~i~~k~n~~~--~~~~pnp----~~-------------------~~~~~~~~~~d~ll~Gnay~~~~r~~-------- 119 (344) +-++......+. ....+.+ .. .......+..+.+.+|.||+.+..+. T Consensus 62 ~~ivd~~a~~l~~~Gf~~~~~~~~~~~~~~d~~~~~~l~~i~~~N~~~~~~~~~~~~a~i~G~a~~~v~~~~~~~~~~~~ 141 (488) T protein:vir:23 62 RTYVDAIAERQELEGFRIPSANGEEPESGGENDPASELWDWWQANNLDIEATLGHTDALIYGTAYITISMPDPEVDFDVD 141 (488) T ss_pred HHHHHHHHHhhhccceeccCCcccccccccchhHHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccccCCC Confidence 222222111110 0011111 00 01123345668899999999876542 Q ss_pred CCceEEEEEeCcceeeccccCc--------eeEEEcCC---------------------ceE-------EEEecccEEEe Q lcl|Aclame:pro 120 TGKVIRLETSPAKYTRRGVEED--------VYWWVPSF---------------------NEP-------TAFAPGSVFHL 163 (344) Q Consensus 120 ~G~~~~L~pl~~~~~~~~~~~~--------~~~~~~~~---------------------~~~-------~~~~~~eIih~ 163 (344) .|.+ .+..++|..+....+.. .+|+-..+ +.. +.|..=.|+++ T Consensus 142 ~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f 220 (488) T protein:vir:23 142 PEVP-LIRVEPPTALYAEVDPRTRKVLYAIRAIYGADGNEIVSATLYLPDTTMTWLRAEGEWEAPTSTPHGLEMVPVIPI 220 (488) T ss_pred CCcc-eEEEeccceeEEEEecCCCceEEEEEEEEecCCCcEEEEEEEecCcEEEEEecCCceEeccccccCCCCcceEEe Confidence 2222 35566665543322211 01111111 110 11111135666 Q ss_pred cCCCCCCCcccccchhh----hHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHH--HHHHHHHHhhccccc Q lcl|Aclame:pro 164 LEPDINQELYGLPEYLS----ALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIE--MLRENMVKSKGRNNF 237 (344) Q Consensus 164 ~~~~~~~~~~G~sp~~~----~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~--~l~~~~~~~~g~~n~ 237 (344) ++..-..+.+|.|.+.- +..++....+-..-...||. .|--++ .+..+++...+ .-...|+... T Consensus 221 ~n~~~~~~~~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a---~p~~~i--~G~~~~~~~~~~~~~~~~~~~~~----- 290 (488) T protein:vir:23 221 SNRTRLSDLYGTSEISPELRSVTDAAAQILMNMQGTANLMA---IPQRLI--FGAKPEELGINAETGQRMFDAYM----- 290 (488) T ss_pred ccccccCCcCCccchhhhHHHHHHHHHHHHHHHHHHHHHhh---hHHHHH--hCCCcccccccccccchhhhhhh----- Confidence 54322345678887642 22222222221111222322 232222 22222211111 0111222221 Q ss_pred ccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHH--------- Q lcl|Aclame:pro 238 KNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVF--------- 308 (344) Q Consensus 238 ~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f--------- 308 (344) ++++++.++ ...++..+...+. ..|++..+....+|+..=++|+..+|....+.+++.-+......+ T Consensus 291 ~~v~~~~~g---~~~~~~q~~~~~~-~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~n~~Sg~Al~~~~~~l~~k~~~~~~ 366 (488) T protein:vir:23 291 ARILAFEGG---EGAHAEQFSAAEL-RNFVDALDALDRKAASYSGLPPQYLSSSSDNPASAEAIKAAESRLVKKVERKNK 366 (488) T ss_pred hhhccCCCC---CCceeEecCCCCh-HHHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHHHHHHHHHHHHHH Confidence 234444332 2345665554332 348888888899999999999999986543322221111111111 Q ss_pred -HHHHHHHHHHHHHHHHHhhCccce--eccccccccCCC Q lcl|Aclame:pro 309 -VRNELIPLQDRIREINGWIGQEVI--RFKNYSLDTDNG 344 (344) Q Consensus 309 -~~~~l~P~~~~ie~ln~~L~~~~i--rf~~y~l~~d~g 344 (344) +...|.-+++.+.. .++..-. .+...+..|.+- T Consensus 367 ~f~~~l~~~~~l~~~---~~~~~~~~~~~~~i~v~f~~~ 402 (488) T protein:vir:23 367 IFGGAWEQAMRLAYK---MVKGGDIPTEYYRMETVWRDP 402 (488) T ss_pred HHHHHHHHHHHHHHH---HhcCCCcchhhccceEEecCC Confidence 11111111111111 1111100 112222333222 No 190 >protein:vir:96839 Length: 474 # NCBI annotation: ORF008 # Family: family:all:125 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240152;genbank:gi:66395815;genbank:GeneID:5133180 Probab=80.16 E-value=0.097 Score=26.13 Aligned_cols=288 Identities=8% Similarity=0.021 Sum_probs=110.7 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) +.++.+. ........+.+-.++ +.. +..++--...+=.+..|+.+. +-..+. T Consensus 59 ~~~~~~~-~~~~~~~~~~~~~ki-~~n------------~~~~Ivd~~~~~l~g~p~~~~--------------~~d~~~ 110 (474) T protein:vir:96 59 LRLAPKL-DNKGEIDPLKPDWRM-FTN------------YHQNLVDQKVAYAVANPVTFS--------------SDDDKS 110 (474) T ss_pred hhccchh-cccccccccccchhc-ccc------------hHHHHHHhhhhhhcccCceee--------------cCchHH Confidence 1111110 000000000000000 000 000000000111112222221 011111 Q ss_pred hhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---------eeEEEcCCce Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPSFNE 151 (344) Q Consensus 81 n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~~~~~~~~~ 151 (344) ...+..+..|.+ ......++.+.+.+|.+|..+..+..|++ .+..++|..+-+..+.. ++|....... T Consensus 111 ~~~l~~~~~n~~--~~~~~~~~~~~~~~G~~~~~~y~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~~~vr~~~~~~~~~ 187 (474) T protein:vir:96 111 LKTIQEVLNHKW--DDKLVDILTAASNKGIEWLQPYIDENGEF-KTFRVPAEQAIPIWTNKERDTLKAFIRYYRLDGAER 187 (474) T ss_pred HHHHHHHHhcCH--HHHHHHHHHHHHhcCeeEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEeecCceE Confidence 112222222321 23345567788999999999988888864 46666766554432211 1121111111 Q ss_pred EEEEecc---------------------------------------cEEEecCCCCCCCcccccchhhhHHHHHHHHHHH Q lcl|Aclame:pro 152 PTAFAPG---------------------------------------SVFHLLEPDINQELYGLPEYLSALNSAWLNESAT 192 (344) Q Consensus 152 ~~~~~~~---------------------------------------eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~ 192 (344) ...+..+ .|+|+++ ...|.|.+......++.-+.+. T Consensus 188 ~~~yt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~g~sd~e~v~~liDa~d~~~ 262 (474) T protein:vir:96 188 VEYWTDSDVTYYEYQDGILIPDYYHGEEHIQSHYYVGNKRVSWGRVPFIPFKN-----NPQEMSDLFMYKTIIDAMDKRL 262 (474) T ss_pred EEEEeCCeEEEEEecCCceeeccccccccccccccccccccCCCceeEEEecc-----CCCCCCcHHHHHHHHHHHHHHH Confidence 1111111 2333332 1247777777666666555554 Q ss_pred HHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHh Q lcl|Aclame:pro 193 LFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKA 272 (344) Q Consensus 193 ~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~ 272 (344) .-..+.+...+.|-.+ +++.... +.+.....++ ..+++.+.+. ..++++ +........+.+..+. T Consensus 263 S~~~~~~~~~~~~~lv--~~g~~~~--~~~~~~~~~~-------~~~~i~~~~~--~~~~~~--l~~~~~~~~~~~~~~~ 327 (474) T protein:vir:96 263 SDTQNTFDESTELIYI--LKGYEGQ--DLDEFMRNLK-------YYKAINVDGD--GSGVDT--IQIEVPVQSSKEYLDM 327 (474) T ss_pred HHHHHHHHHhccceee--eecCCcc--cccchhhhhh-------cCceEEecCC--CCceeE--EeecCChHHHHHHHHH Confidence 4455555666666444 4443321 1111111111 1234444321 123443 3333344567777888 Q ss_pred hHHHHHHHhcCChHHhccccccccccccHHHH----------HHHHHHHHHHHHHHHHHHHHHhhCccceeccccccccC Q lcl|Aclame:pro 273 SAADLLDAHRIPFQLMGGKPENVGSLGDIEKV----------AKVFVRNELIPLQDRIREINGWIGQEVIRFKNYSLDTD 342 (344) Q Consensus 273 ~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~----------~~~f~~~~l~P~~~~ie~ln~~L~~~~irf~~y~l~~d 342 (344) ..+.|+..-++|..-.+-. +++.++-.++-. .+.++...|.-+++.|.+ .++... ....-.+.|+ T Consensus 328 l~~~i~~~s~~p~~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~~i~~---~~~~~~-~~~~i~i~f~ 402 (474) T protein:vir:96 328 LRDYVIEFGQGVDFQQDKF-GNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIID---FYKLNI-KVQDVEITFN 402 (474) T ss_pred HHHHHHHHhCCcccccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCc-ccceeeEEec Confidence 8999999999996532211 111111001100 011112222222222211 122221 2223345566 Q ss_pred CC Q lcl|Aclame:pro 343 NG 344 (344) Q Consensus 343 ~g 344 (344) .+ T Consensus 403 ~~ 404 (474) T protein:vir:96 403 FN 404 (474) T ss_pred cC Confidence 66 No 191 >protein:vir:9871 Length: 429 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795633;genbank:gi:28876408;genbank:GeneID:1257942 Probab=80.04 E-value=0.099 Score=26.10 Aligned_cols=280 Identities=10% Similarity=0.033 Sum_probs=109.9 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) .+++.+.. ..+ -.++ ++.|-. .+.+- ..+-.+..|+.+. +-.... T Consensus 34 l~~~~~~~-~~~-------~~ki-~~n~~~--------~ivd~----~~~~l~g~~~~~~--------------~~~~~~ 78 (429) T protein:vir:98 34 LQQKQKEQ-YKP-------DNRL-VVNFAK--------YIVDT----FNGYFIGVPVQTS--------------HENKQV 78 (429) T ss_pred cccccccc-CCC-------ccee-ecchHH--------HHHHH----HhhhhcccCceee--------------cCChHH Confidence 22211110 000 0000 000000 00000 0000111121110 000000 Q ss_pred hhhH-HhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---------eeEEEcCC- Q lcl|Aclame:pro 81 NILA-STFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPSF- 149 (344) Q Consensus 81 n~~~-~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~~~~~~~- 149 (344) +..+ ..+.-|.+ ...+..++.+.+.+|.+|..+..+..|++ .+..++|..+.+..+.. ++|..... T Consensus 79 ~~~l~~~~~~n~~--~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~~~~~~p~~~~~v~dd~~~~~~~~~i~~~~~~~~~ 155 (429) T protein:vir:98 79 SNYLELLDGYNDQ--DDNNAELSKICSIYGHGYELVFNDENAEA-GITYLTPLEAFIVYDDSIRQKPLFAVRYFYNKGGV 155 (429) T ss_pred HHHHHHHHhhcCH--hHHHHHHHHHHhhcCeEEEEEEecCCCcE-EEEEEcccceEEEEeCCCCCceEEEEEEEEecCce Confidence 0011 11122221 23456677899999999999998888874 45666666554322110 01111110 Q ss_pred --------ceEEEE-----------------ecccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCC Q lcl|Aclame:pro 150 --------NEPTAF-----------------APGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAH 204 (344) Q Consensus 150 --------~~~~~~-----------------~~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~ 204 (344) ...+.+ ..=.|+++++ ...|.|.+......++....+..-..+.....+. T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~sd~e~v~~liD~~d~~~s~~~~~~~~~~~ 230 (429) T protein:vir:98 156 LEGSYSDASNITYFKDGEKGIEIGESEPHPFDGVPMIEYVE-----NEERQSLLASVVTLINAFNKAISEKANDVEYFAD 230 (429) T ss_pred EEEEEEeCceEEEEEecCCceEecccccccCCccceEEecC-----CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcC Confidence 000011 1112444442 2358888877666666555555444555566666 Q ss_pred CceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCC Q lcl|Aclame:pro 205 AGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIP 284 (344) Q Consensus 205 p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVP 284 (344) |-.++ ++...+++....++. .+-+.+-.++++..++++. ........+.+..+.-.+.|+..-++| T Consensus 231 p~~~i--~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~~~i~~~s~~p 296 (429) T protein:vir:98 231 AYLKI--LGAELDDETLKSLRD----------TRIINLKDTDAQQLTVEFL--QKPDADATQEHLLDRLENLIFRTAMVA 296 (429) T ss_pred ceeee--ecCCCCcchhhhHhh----------CceeeccCCCCCCcceeEE--eecCCHHHHHHHHHHHHHHHHHHhCcc Confidence 65454 455555443332211 1122222333333334443 333334456667788899999999998 Q ss_pred hHHhccccccccccccHHHHHHHHHHHHHHHHHH----HH----HH----HHHhhCccceec--cccccccCCC Q lcl|Aclame:pro 285 FQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQD----RI----RE----INGWIGQEVIRF--KNYSLDTDNG 344 (344) Q Consensus 285 p~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~----~i----e~----ln~~L~~~~irf--~~y~l~~d~g 344 (344) ..-.+ + ++|.......+....+.=.+. .+ ++ +...++.....+ ..-++.|.+. T Consensus 297 ~~~~~----~---~gn~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~d~~~i~v~f~~~ 363 (429) T protein:vir:98 297 NISDE----S---FGTASGIALRYRLQAMDNLAKTKERKFMSGMNRRYKLIASYPTSKIGPKDWIGIKYKFTRN 363 (429) T ss_pred ccCcc----c---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccceEEeCCC Confidence 53221 1 122222211111111111111 11 11 111122111111 2234555555 No 192 >protein:vir:96179 Length: 468 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240075;genbank:gi:66395736;genbank:GeneID:5133166 Probab=79.65 E-value=0.1 Score=26.01 Aligned_cols=286 Identities=7% Similarity=0.036 Sum_probs=107.9 Q ss_pred CC------CCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhh Q lcl|Aclame:pro 1 MS------KKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSS 74 (344) Q Consensus 1 m~------~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~ 74 (344) +. ++.+.... .......+-.++ ++.|.. .+.+. ..+-.+..|+.+. T Consensus 53 ~g~~~i~~~~~~~~~~-~~~~~~~~~~ki-~~n~~~--------~Iv~~----~~~~l~g~p~~~~-------------- 104 (468) T protein:vir:96 53 NHQPDVLFNAPKRNVK-GEIDPFKPDWRM-YTNYHQ--------NLVDQ----KVAYAVANPVTYG-------------- 104 (468) T ss_pred cCCCcccccccccccc-cccccccccccc-ccchHH--------HHHHH----HHhhhccCCceec-------------- Confidence 22 21111100 000000000011 011100 00000 0011112222221 Q ss_pred hhhhcchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccC----c-----eeEE Q lcl|Aclame:pro 75 PIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEE----D-----VYWW 145 (344) Q Consensus 75 ~i~~k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~----~-----~~~~ 145 (344) +-....+..+..+..|.+ ......++.+.+.+|.+|..+..+..|.+ .+..++|..+-+..+. . ++|. T Consensus 105 ~~d~~~~~~l~~~~~n~~--~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~v~~~~~~~~~~~~ir~~~ 181 (468) T protein:vir:96 105 TEDEKSLKTIQEVLNHKW--DDKLVDILTAASNKGVEWIQPYVDEQGEF-KTFRVPAEQAIPIWTNKERDELKAFIRLYE 181 (468) T ss_pred cCChHHHHHHHHHHhcCH--HHHHHHHHHHHhhcCeEEEEEEEcCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEE Confidence 111111112222222321 23455677889999999999888887763 4555666554332211 1 1111 Q ss_pred EcCCceEEEEeccc---------------------------------------EEEecCCCCCCCcccccchhhhHHHHH Q lcl|Aclame:pro 146 VPSFNEPTAFAPGS---------------------------------------VFHLLEPDINQELYGLPEYLSALNSAW 186 (344) Q Consensus 146 ~~~~~~~~~~~~~e---------------------------------------Iih~~~~~~~~~~~G~sp~~~~~~~i~ 186 (344) .........+.++. |+++++ ...|.|.+......++ T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPvv~~~n-----~~~g~sd~e~v~~liD 256 (468) T protein:vir:96 182 LDGGERVEYWTANDVTFYELKDGQLIPDYYQGEEHVQAHYYVGNKSMSWNRVPFIPFKN-----NPQEVSDLFMYKTIID 256 (468) T ss_pred ecCceEEEEEeCCeEEEEEEcCCceeecccccccccccceeeccccccCCcccEEEecC-----CCCCCCchHHHHHHHH Confidence 11111111111222 222221 2247777666555555 Q ss_pred HHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHH Q lcl|Aclame:pro 187 LNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDF 266 (344) Q Consensus 187 ~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf 266 (344) .-..+..-..+.++..+.|-.+ +++...++ .+.....++ . .+++.+.+.+ .+++++.... .....+ T Consensus 257 a~d~~~S~~~~~~~~~~~p~lv--~~g~~~~~--~~~~~~~~~------~-~~~i~~~~d~-~~~~~~l~~~--~~~~~~ 322 (468) T protein:vir:96 257 AMDKRLSDTQNTFDEATELIYV--LKGYEGED--LEEFMYNLK------Y-YKAINVDGDG-SGGVDTIQID--VPVQSA 322 (468) T ss_pred HHHHHHHHHHHHHHHhcCceee--eecCCccc--cchhhhhhh------c-CceEEecCCC-CCcceEEeec--CChHHH Confidence 4444444344445555566444 44543321 111122221 1 2333333211 2345554433 334556 Q ss_pred HHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhCcccee Q lcl|Aclame:pro 267 FNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAK-------------VFVRNELIPLQDRIREINGWIGQEVIR 333 (344) Q Consensus 267 ~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~-------------~f~~~~l~P~~~~ie~ln~~L~~~~ir 333 (344) .+..+.-.+.|...-++|...-+ +.++..+.+.... ..+...|.-+++. +...+|..+ . T Consensus 323 ~~~~~~l~~~I~~~s~~p~~~~~----~~~~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~l---i~~~~g~~~-d 394 (468) T protein:vir:96 323 KEYLDMLRDYVIEFGQGVDFQQD----KFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQY---IIDFYKLSI-K 394 (468) T ss_pred HHHHHHHHHHHHHHhCccccccc----ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCCCc-c Confidence 67778888999999999863221 1111111111111 1111111111111 222233321 2 Q ss_pred ccccccccCCC Q lcl|Aclame:pro 334 FKNYSLDTDNG 344 (344) Q Consensus 334 f~~y~l~~d~g 344 (344) ...-.+.|+.. T Consensus 395 ~~~i~i~f~~~ 405 (468) T protein:vir:96 395 VQDVEITFNFN 405 (468) T ss_pred cceeeEEecCC Confidence 23345556666 No 193 >protein:vir:102950 Length: 471 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945279;genbank:gi:39653714;interpro:IPR006428;uniprot:Q708N3;genbank:GeneID:2672864 Probab=79.58 E-value=0.1 Score=25.99 Aligned_cols=300 Identities=9% Similarity=-0.024 Sum_probs=108.2 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhc---cchhhhccccHHHHHHHHhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECIS---NGRWYEPPVSFTGLAKSLRAAVHHSSPIY 77 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~p~~~~~l~~~~~~~~~~~~~i~ 77 (344) |.+++.............. +. ....| .+.-...+..... .+=.+..|+.+. +-. T Consensus 38 ~~~~~~~~~~~~~~~~~~~-~~----~~~~~----~~ki~~n~~~~Ivd~~~~yl~G~p~~~~--------------~~~ 94 (471) T protein:vir:10 38 KRKRKPADKKGAENEAKAE-DN----AFRNA----DNRISHNWHQLLLDQKKAYALTYPPTFD--------------VDD 94 (471) T ss_pred ccccchhhhhccccccccc-cc----ccccc----cceeccchhHHHHHhhhhhhcccCceec--------------cCC Confidence 3332221111000000000 00 00000 0000000000000 011112222221 111 Q ss_pred hcchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCC-CceEEEEEeCcceeeccccCc---------eeEEEc Q lcl|Aclame:pro 78 VKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTT-GKVIRLETSPAKYTRRGVEED---------VYWWVP 147 (344) Q Consensus 78 ~k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~-G~~~~L~pl~~~~~~~~~~~~---------~~~~~~ 147 (344) .+....+..+..|.+ ......+..+.+.+|.||..+.++.. |+ ..+..++|..+-+..+.. ++|... T Consensus 95 ~~~~~~l~~~~~n~~--~~~~~~~~~~~~~~G~~~~~v~~d~~~g~-~~~~~~~p~~~~~i~d~~~~~~~~~~ir~~~~~ 171 (471) T protein:vir:10 95 KKVNDMIVDVLGDDY--ERISKQLCVNAGNAGIAWLHVWKDASDNS-FRYACVDSKEVIPIYSKSLDKKSIGVLRVYSSI 171 (471) T ss_pred hHHHHHHHHHHhcCH--HHHHHHHHHHHhhCCeEEEEEEeeCCCCe-eEEEEEcccceEEEEcCCCCCceEEEEEEEEee Confidence 122222222223322 23345567789999999999988753 54 456667776654332211 122221 Q ss_pred --CCceE----EEEecccEEEecCCC-------------------------------CC---------CCcccccchhhh Q lcl|Aclame:pro 148 --SFNEP----TAFAPGSVFHLLEPD-------------------------------IN---------QELYGLPEYLSA 181 (344) Q Consensus 148 --~~~~~----~~~~~~eIih~~~~~-------------------------------~~---------~~~~G~sp~~~~ 181 (344) .++.. ..+..+.+.|++... +. +...|.|.+... T Consensus 172 ~~~~~~~~~~~~vy~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n~~~~~sd~e~v 251 (471) T protein:vir:10 172 DETDGKNYTVYEYWNDKECSFYRHEKEKPLEELETFQAISLIDTMNGDRSSDNSFKHDFGLVPFIPFKNNEIETNDLKPI 251 (471) T ss_pred ccCCCceeEEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccccCCCCceeEEEeccCCCCCCchHHH Confidence 11111 112333343332110 00 112366667665 Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCCh Q lcl|Aclame:pro 182 LNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVA 261 (344) Q Consensus 182 ~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~ 261 (344) ...++.-+.+..-..+.+...+.|- +.+++....+ .+.....+.. .+++.+...+...+.+++.+.... T Consensus 252 ~~liDa~d~~~S~~~~~~~~~~~~~--lv~~g~~~~~--~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~l~~~~ 320 (471) T protein:vir:10 252 KDLVDVYDKVFSGFVNDTDDVQEVI--FVLTNYGGQD--KQEFLEDLKR-------YKMIKMDNDGMGDQSGVTTIAIDI 320 (471) T ss_pred HHHHHHHHHHHHHHHHHHHHhhCce--eeeecCCccc--cchhHHHhhc-------CCeEEecCCCCccCccceEEeecC Confidence 5555544433333344444444553 3344432211 1112222211 112222222212223333333333 Q ss_pred hHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHH----------HHHHHHHHHHHHHHHHHHHHHhhCccc Q lcl|Aclame:pro 262 TKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKV----------AKVFVRNELIPLQDRIREINGWIGQEV 331 (344) Q Consensus 262 ~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~----------~~~f~~~~l~P~~~~ie~ln~~L~~~~ 331 (344) ....+.+..+.-.+.|...-++|..-.+-. +++++-.++-. .+..+...+.-+++. +...++.. T Consensus 321 ~~~~~~~~~~~l~~~I~~~s~tp~~~~~~~--gn~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~l---i~~~~~~~- 394 (471) T protein:vir:10 321 PTEARNLILERTKKQIFISGQGVNPETDKL--GNSSGVALKFLYSLLELKAGNMETQFRSGYATLVKM---ILKHLGLS- 394 (471) T ss_pred ChHHHHHHHHHHHHHHHHHhCCcCCCcccc--cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccC- Confidence 445577777888899999999986422111 11111111111 011111111111111 12222221 Q ss_pred eeccccccccCCC Q lcl|Aclame:pro 332 IRFKNYSLDTDNG 344 (344) Q Consensus 332 irf~~y~l~~d~g 344 (344) .+.+..+.|... T Consensus 395 -d~~~i~i~f~~~ 406 (471) T protein:vir:10 395 -DKLKIKQTWTRN 406 (471) T ss_pred -CCceeEEEeCCC Confidence 123445666666 No 194 >protein:vir:97336 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240606;genbank:gi:66396273;genbank:GeneID:5133692 Probab=79.32 E-value=0.11 Score=25.94 Aligned_cols=285 Identities=8% Similarity=0.043 Sum_probs=111.9 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) +.++++.-... ......+-.++ +..|.. .+.+. ..+-.+..|+.+. +-.... T Consensus 77 ~~~~~~~~~~~-~~~~~~~~~ri-~~n~~k--------~Ivd~----~~~yl~g~p~~~~--------------~~d~~~ 128 (492) T protein:vir:97 77 VKEPKPVDATG-AVDPLKPDDRM-ITNFHA--------NLVDQ----KVSYIVGKPIAFK--------------HTDDEV 128 (492) T ss_pred ccccccccccc-ccccccccccc-ccchHH--------HHHHH----HhhhhcccCceec--------------cCchHH Confidence 11111100000 00000000000 000000 00000 0111122222221 001111 Q ss_pred hhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---------eeEEEcCCce Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPSFNE 151 (344) Q Consensus 81 n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~~~~~~~~~ 151 (344) ...+..+..|.+ ......+..+.+.+|.||..+..+..|++ .+..++|..+-+..+.. ++|....... T Consensus 129 ~~~l~~~~~n~~--~~~~~~~~~~~~~~G~a~~~v~~d~dg~~-~~~~~~p~~~~~i~d~~~~~~~~~~vr~~~~~~~~~ 205 (492) T protein:vir:97 129 VKRIDEVLGNRF--DDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETK 205 (492) T ss_pred HHHHHHHHhccH--HHHHHHHHHHHhhcCeEEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEeecccee Confidence 112222223322 23445677889999999999999888864 46667776654432211 1121111111 Q ss_pred EEEEeccc-----------------------------------EEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 152 PTAFAPGS-----------------------------------VFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRR 196 (344) Q Consensus 152 ~~~~~~~e-----------------------------------Iih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~ 196 (344) ...+.++. |+++++ .-.|.|.+......++.-..+..-.. T Consensus 206 ~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----n~~g~sd~e~v~~liDa~d~~~S~~~ 280 (492) T protein:vir:97 206 VEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISDIFMYKTLIDAYNRRLSDLS 280 (492) T ss_pred EEEEecCeEEEEEEecCeeeecccccccccccccccCCCCCcceEEecC-----CCCCCCchHhHHHHHHHHHHHHHHHH Confidence 11112222 222221 12477778776666655554444445 Q ss_pred HHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHH Q lcl|Aclame:pro 197 KYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAAD 276 (344) Q Consensus 197 ~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~ 276 (344) +.+...+.|-.++ ++. +.++....+..++.. +++.+..+ .++++ +........+.+..+.-.+. T Consensus 281 ~~~~~~~~~~l~~--~g~--~~~~~~~~~~~~~~~-------~~~~~~~~---~~~~~--l~~~~~~~~~~~~~~~L~~~ 344 (492) T protein:vir:97 281 NTFKDSNELTYVL--KNY--DDQELPEFKRLLRYY-------GAIKVSDN---GGVDT--IQVEVPVENSKKYLDELYQK 344 (492) T ss_pred HHHHHhccceeee--ecC--CcccchhHHHHHhhc-------cceecCCC---Cccee--EeccCCHHHHHHHHHHHHHH Confidence 5555556665444 332 222222223222211 23333322 23444 33333456677778888899 Q ss_pred HHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHHHHHH--------HHH----HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 277 LLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDR--------IRE----INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 277 I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~--------ie~----ln~~L~~~~irf~~y~l~~d~g 344 (344) |+..-++|....+-..+ |.......+....+.-.+.. +++ +...++... .+...++.|+.. T Consensus 345 I~~~s~~p~~~~~~~~~------n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~-~~~~i~v~f~~~ 417 (492) T protein:vir:97 345 IMLFGQAVDFSSDKFGS------APSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKG-EHKDVDISFNYN 417 (492) T ss_pred HHHHhCCCCCCcccccc------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccceeeEEecCC Confidence 99999998643322111 11111111111111111111 111 112222221 233445566666 No 195 >protein:vir:4223 Length: 486 # NCBI annotation: predicted 53.7Kd protein # Family: family:all:524 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039678;swissprot:sw:q05220;genbank:gi:9625444;uniprot:Q05220;genbank:GeneID:2942930;interpro:IPR010859 Probab=78.15 E-value=0.12 Score=25.69 Aligned_cols=295 Identities=11% Similarity=0.050 Sum_probs=104.6 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) ..+..-+.. +. .......... .+.. |.. .-+..++..+.-..+... -.... T Consensus 40 ~G~~~i~~~-~~--~~~~~~~~~~--------~v~n---------------~~~--~iVd~~~~~l~~~g~~~~-~~~~~ 90 (486) T protein:vir:42 40 DAERRPEAI-GV--TVPREMQQLL--------AHVG---------------YPR--LYVDSVAERQAVEGFRLG-DADEA 90 (486) T ss_pred cccCcchhc-cc--ccchhHhhhh--------hccc---------------hHH--HHHHHHHhhhcccceecC-CCchh Confidence 111110000 00 0000000000 0000 000 000001110000111000 00000 Q ss_pred hh-hHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCc-------eEEEEEeCcceeeccccCce--------eE Q lcl|Aclame:pro 81 NI-LASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGK-------VIRLETSPAKYTRRGVEEDV--------YW 144 (344) Q Consensus 81 n~-~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~-------~~~L~pl~~~~~~~~~~~~~--------~~ 144 (344) +. +-..+..|.+ ......++.+.+.+|.||+.+.++..|. ...+.+++|..+....+... +| T Consensus 91 ~~~~~~i~~~N~~--d~~~~~~~~~a~~~G~ay~~v~~~e~~~~~~~~~~~~~i~~~~p~~~~~i~d~~~~~~~~~~~~~ 168 (486) T protein:vir:42 91 DEELWQWWQANNL--DIEAPLGYTDAYVHGRSFITISKPDPQLDLGWDQNVPIIRVEPPTRMHAEIDPRINRVSKAIRVA 168 (486) T ss_pred HHHHHHHHHhcCh--hHHHHHHHHHHhhcCceEEEEecCCcccccccCCCeeEEEEecccceEEEEeCCCCCeEEEEEEE Confidence 00 1111222322 2334567788999999999998765432 23566666665443322110 01 Q ss_pred ---------------------EEcCCceE-------EEEecccEEEecCCCCCCCcccccchh----hhHHHHHHHHHHH Q lcl|Aclame:pro 145 ---------------------WVPSFNEP-------TAFAPGSVFHLLEPDINQELYGLPEYL----SALNSAWLNESAT 192 (344) Q Consensus 145 ---------------------~~~~~~~~-------~~~~~~eIih~~~~~~~~~~~G~sp~~----~~~~~i~~~~~a~ 192 (344) ....++.. +.|..=.|+++++..-..+.+|.|.+. ++.+++....+- T Consensus 169 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~~~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~- 247 (486) T protein:vir:42 169 YDKEGNEIQAATLYTPMETIGWFRADGEWAEWFNVPHGLGVVPVVPLPNRTRLSDLYGTSEITPELRSMTDAAARILML- 247 (486) T ss_pred EecCCCeEEEEEEEcCCcEEEEEecCCcEEeecceecCCCCceEEEeccccccCCCCCcccchhhHHHHHHHHHHHHHH- Confidence 11111110 111111355555432234567888665 333343333222 Q ss_pred HHHHHHHHccCCCceEEEecCCCCCHHHHHH--HHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHH Q lcl|Aclame:pro 193 LFRRKYYENGAHAGYIMYVTDAVQDRNDIEM--LRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIK 270 (344) Q Consensus 193 ~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~--l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~ 270 (344) ......-.+.|--++ ++..+++...+. -...|+.. .++++++. ++..++..+..... .-|++.. T Consensus 248 --~~~~~e~~a~p~~~i--~G~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~----~~~~~~~q~~~~~~-e~~~~~l 313 (486) T protein:vir:42 248 --MQATAELMGVPQRLI--FGIKPEEIGVDSETGQTLFDAY-----LARILAFE----DAEGKIQQFSAAEL-ANFTNAL 313 (486) T ss_pred --HHHHHHhhcchHHHh--hcCCccccccccccccchhhhh-----hchhcccC----CCCceEEeecccCH-HHHHHHH Confidence 222222233343333 232211111110 11112211 23444432 23455655543322 2378888 Q ss_pred HhhHHHHHHHhcCChHHhccccccccccccHHHHHH----------HHHHHHHHHHHHHHHHHHHhhCcccee--ccccc Q lcl|Aclame:pro 271 KASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAK----------VFVRNELIPLQDRIREINGWIGQEVIR--FKNYS 338 (344) Q Consensus 271 ~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~----------~f~~~~l~P~~~~ie~ln~~L~~~~ir--f~~y~ 338 (344) +.....++..=++|++.+|....+.+++..++.... ..+...|.-+++.+..+ ++..-+. +...+ T Consensus 314 ~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~---~~~~~~~~d~~~i~ 390 (486) T protein:vir:42 314 DQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNLMFGGAWEEAMRIAYRI---MKGGDVPPDMLRME 390 (486) T ss_pred HHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCccccceeee Confidence 888888888899999999865433222212221111 11122222222211111 1111111 12223 Q ss_pred cccCCC Q lcl|Aclame:pro 339 LDTDNG 344 (344) Q Consensus 339 l~~d~g 344 (344) +.|.+. T Consensus 391 v~w~~~ 396 (486) T protein:vir:42 391 TVWRDP 396 (486) T ss_pred EEecCC Confidence 344443 No 196 >protein:vir:2500 Length: 501 # NCBI annotation: putative portal gp5 # Family: family:all:524 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569741;genbank:gi:18496891;genbank:GeneID:932330 Probab=77.77 E-value=0.12 Score=25.61 Aligned_cols=286 Identities=13% Similarity=0.053 Sum_probs=101.9 Q ss_pred CCC-------------------------------CCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhcc Q lcl|Aclame:pro 1 MSK-------------------------------KKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISN 49 (344) Q Consensus 1 m~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~ 49 (344) |+. ...+............... ..+. . T Consensus 23 ~~~~~~~~l~~~l~~~~~~~~~rl~~l~~YY~G~~~~~~~~~~~~~~~~~~~~---------~~v~------n------- 80 (501) T protein:vir:25 23 MSREQLGALVADMWRLHISERQWLDRIYEYTKGLRGRPEVPEGASDEVKELAK---------LSVK------N------- 80 (501) T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhccccCChhhhhhHh---------hhhc------C------- Confidence 111 1000000000000000000 0000 0 Q ss_pred chhhhccccHHHHHHHHhhhhhhhhhhhhcchh-hHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEE Q lcl|Aclame:pro 50 GRWYEPPVSFTGLAKSLRAAVHHSSPIYVKRNI-LASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLET 128 (344) Q Consensus 50 ~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~n~-~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~p 128 (344) |.. +-+..++..+.-+++. +-....+. +...+.-|.+ ......+..+.+.+|.||+.+.++..|.. +.. T Consensus 81 --~~~--~ivd~~a~~l~~~gf~--~~d~~~~~~l~~i~~~N~~--d~~~~~~~~~a~i~G~ay~~v~~de~~~~--i~~ 150 (501) T protein:vir:25 81 --VLS--LVRDSFAQNLSVVGYR--NALAKENDPAWEMWQRNRM--DARQAEVHRPALTYGASYVTVTPTDEGPV--FRT 150 (501) T ss_pred --hHH--HHHHHHHhhhccccee--cCCccchHHHHHHHHhcCh--hHHHHHHHHHHhhcCceEEEEecCCCCCe--EEE Confidence 000 0000011111111100 00000111 1111222322 12344567888999999999988887743 445 Q ss_pred eCcceeeccc-cC--c-------eeEEEcCC------------ceEEEEe------------------------------ Q lcl|Aclame:pro 129 SPAKYTRRGV-EE--D-------VYWWVPSF------------NEPTAFA------------------------------ 156 (344) Q Consensus 129 l~~~~~~~~~-~~--~-------~~~~~~~~------------~~~~~~~------------------------------ 156 (344) ++|..+.... ++ + .+|..... ...+.+. T Consensus 151 ~sp~~~~~iy~D~~~~~~~~~ai~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (501) T protein:vir:25 151 RSPRQILAVYADPSVDAWPQYALETWVAQKDAKPHRRGVLYDDTYMYELDLGEVVLGDAGGGQATQQPVNVREVTDVIEH 230 (501) T ss_pred eccccEEEEEecCCCCcceeEEEEEEeeccccCcceeEEEecCeeEEEEecCceeeeecccccccccccccccccccccc Confidence 5665554221 10 0 01111100 0000110 Q ss_pred --------cccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 157 --------PGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENM 228 (344) Q Consensus 157 --------~~eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~ 228 (344) .=.|+|+++..-.++ +|.|.++.....++....+..-......-.+.|--++ .+...+ +.+. | T Consensus 231 ~~~~~~~~~vPiv~f~N~~~~~~-~g~sdie~v~~l~Da~~~~~s~~~~~~e~~a~p~~~i--~G~~~~--~~~~----~ 301 (501) T protein:vir:25 231 GATFEGKPVCPVVRFVNGRDADD-MIVGEVAPLILLQQAINSVNFDRLIVSRFGANPQRVI--SGWTGS--KAEV----L 301 (501) T ss_pred ccccCCccceeeEeccCccccCc-cccchhhhhHHHHHHHHHHHHHHHHHHHhhccHHHHH--hCCCCC--ccch----h Confidence 113455544221122 4777665544333333333222222333333343222 332222 2221 2 Q ss_pred HHhhcccccccccccCCCCccccceeeeccCChhHHH-HHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHH Q lcl|Aclame:pro 229 VKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDD-FFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKV 307 (344) Q Consensus 229 ~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~q-f~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~ 307 (344) +.. .++++++. + .+.++..+.. .+++ |++..+....+|+++=++|++.+|...++. + .+ ... T Consensus 302 ~~~-----~~~i~~~~-~---~~~~~~q~~~--~~~~~~~~~l~~~i~~i~~~s~~P~~~~~~~~~N~-S---g~--Al~ 364 (501) T protein:vir:25 302 KAS-----ALRVWTFE-D---PEVKAQAFPP--ASVEPYNLILEEMLQHVAMVAQISPAQVTGKMINV-S---AE--ALA 364 (501) T ss_pred hhc-----ccceeccC-C---CCceEEEecc--cChHHHHHHHHHHHHHHHhhcCCChhhhccccCCh-H---HH--HHH Confidence 211 23455442 2 2344544432 2344 889999999999999999999998643322 1 12 112 Q ss_pred HHHHHHHHHHHHHHH-----HHH---h----hCccc-eeccccccccCCC Q lcl|Aclame:pro 308 FVRNELIPLQDRIRE-----ING---W----IGQEV-IRFKNYSLDTDNG 344 (344) Q Consensus 308 f~~~~l~P~~~~ie~-----ln~---~----L~~~~-irf~~y~l~~d~g 344 (344) +....|.-.+.+.+. +.+ . .+... ......++.|.+. T Consensus 365 ~~~~~l~~ka~~k~~~f~~~l~~~~rl~~~~~~~~~~~~~~~i~v~w~~~ 414 (501) T protein:vir:25 365 AAEANQQRKLAAKRESFGESWEQLLRLAAEMDDDPDTAADSGAEVLWRDT 414 (501) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccceeeeEEecCC Confidence 222222221111111 111 0 01110 0011123333344 No 197 >protein:vir:97171 Length: 512 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239722;genbank:gi:66394876;genbank:GeneID:5130904 Probab=77.52 E-value=0.12 Score=25.56 Aligned_cols=303 Identities=11% Similarity=0.009 Sum_probs=115.5 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) +.+++.+... ..+-.++ +++ +..++--...+-.+..|+.+. +-.... T Consensus 74 ~~~~~~~~~~------~~~~~ki----------~~n---~~k~Ivd~~~~yl~g~p~~~~--------------~~d~~~ 120 (512) T protein:vir:97 74 LVELTRRKEE------YMADNRV----------AHD---YASYISDFINGYFLGNPIQCQ--------------DDDKDV 120 (512) T ss_pred ccccCccccc------ccCccee----------ecc---hHHHHHHHHhhhhcccCceec--------------cCChHH Confidence 1111111000 0000000 000 000000001111122222221 000011 Q ss_pred hhhH-HhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---------eeEEEcC-- Q lcl|Aclame:pro 81 NILA-STFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPS-- 148 (344) Q Consensus 81 n~~~-~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~~~~~~-- 148 (344) +..+ ..+..|.+ ......+..+.+.+|.||..+.++..|++ .+..++|..+.+..+.. +||.... T Consensus 121 ~~~l~~~~~~n~~--~~~~~~~~~~~~i~G~ay~~vy~ded~~~-~i~~~~p~~~~~iyd~~~~~~~~~~vr~~~~~~~~ 197 (512) T protein:vir:97 121 LEAIEAFNDLNDV--ESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPID 197 (512) T ss_pred HHHHHHHHhhcCH--HHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEeeecc Confidence 1111 11122211 23456677889999999999999888864 56777776655433221 1222210 Q ss_pred Cc---e--E-EEEecccEEEecCCCC-------------------------CCCcccccchhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 149 FN---E--P-TAFAPGSVFHLLEPDI-------------------------NQELYGLPEYLSALNSAWLNESATLFRRK 197 (344) Q Consensus 149 ~~---~--~-~~~~~~eIih~~~~~~-------------------------~~~~~G~sp~~~~~~~i~~~~~a~~~~~~ 197 (344) ++ . . ..+.++.|.+++.-+. .+.-.|.|.+..+...++.-..+..-..+ T Consensus 198 ~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~gd~e~v~~liDa~d~~~S~~~~ 277 (512) T protein:vir:97 198 KTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTAN 277 (512) T ss_pred ccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCcccceEeecCCCCCCCchhhhHHHHHHHHHHHHHHHH Confidence 00 0 0 1233334444321100 00124677777766666655554444444 Q ss_pred HHHccCCCceEEEecCCCCCHHHHHHHHHHHHH-hhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHH Q lcl|Aclame:pro 198 YYENGAHAGYIMYVTDAVQDRNDIEMLRENMVK-SKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAAD 276 (344) Q Consensus 198 ~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~ 276 (344) .+...+.|-.++.- ....++++....+....- ............. +.++|.+++.+........+....+.-.+. T Consensus 278 ~~~~~~~~~lv~~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~ 353 (512) T protein:vir:97 278 YMSDLNDAMLLIKG-NLNLDPVEVRKQKEANVLFLEPTVYENRDTGI---ETEGSVDGGYIYKQYDVQGTEAYKDRLNSD 353 (512) T ss_pred HHHHhcCceeeeec-CccCCchhhhhhhhcccccccccchhhccccc---CCCCCcceEEEeecCCHHHHHHHHHHHHHH Confidence 45555556555431 122333333322221111 0111011111111 112344455554444556677778888999 Q ss_pred HHHHhcCChHHhccccccccccccHHH----------HHHHHHHHHHHHHHHHHHHHHHhhCccc--eeccccccccCCC Q lcl|Aclame:pro 277 LLDAHRIPFQLMGGKPENVGSLGDIEK----------VAKVFVRNELIPLQDRIREINGWIGQEV--IRFKNYSLDTDNG 344 (344) Q Consensus 277 I~~~fgVPp~llG~~~~~~~~~~n~e~----------~~~~f~~~~l~P~~~~ie~ln~~L~~~~--irf~~y~l~~d~g 344 (344) |...-++|..-.+...++ .++-.++- ..+..++..|.=.++.|..+-...+..- ..+..-.+.|+.. T Consensus 354 I~~~s~~p~~~~~~~~gn-~Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~~~f~~~ 432 (512) T protein:vir:97 354 IHMFTNTPNMKDDNFSGT-QSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRN 432 (512) T ss_pred HHHHhCCcccCccccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccceEEeCCC Confidence 999999997654432211 11111110 0111112222222222222111111100 1122345556666 No 198 >protein:vir:99072 Length: 479 # NCBI annotation: gp27 # Family: family:all:524 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655892;genbank:gi:109521464;genbank:GeneID:4158037 Probab=76.80 E-value=0.13 Score=25.41 Aligned_cols=291 Identities=10% Similarity=0.030 Sum_probs=109.1 Q ss_pred EEEcCCceeccCcchhhhhhh-----hh--------ccchhhhccccH--------HHHHHHHh---hhhhhhhhhhhcc Q lcl|Aclame:pro 25 AFTFGEPVPVLDRRDILDYVE-----CI--------SNGRWYEPPVSF--------TGLAKSLR---AAVHHSSPIYVKR 80 (344) Q Consensus 25 ~f~~~~p~~~~~~~~~~~~~~-----~~--------~~~~~~~~p~~~--------~~l~~~~~---~~~~~~~~i~~k~ 80 (344) ++.| |..-++..++-.++. .. ...+||+---.+ ....+.++ ...+++-++... T Consensus 1 ~~~~--p~~~l~~~~~~~~~~~~l~~~~~~~~~r~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~~n~~~~iVd~~- 77 (479) T protein:vir:99 1 MIDL--PDEDLSSEGLAKYLETKVFPKMNTECERLDDFEAWTKNGQEVPDLATRHKNKEREVLQQLSRKPWMGLMVNSF- 77 (479) T ss_pred CccC--CcccCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCcccccccccCChhHHHHHHHhhcCcHHHHHHHH- Confidence 3333 222233322222221 10 011233211111 01111111 111222222211 Q ss_pred hhhHHhhhcCCCCC------------------HHHHHHHHHHHHhcCCceEEEee-----CCCCceEEEEEeCcceeecc Q lcl|Aclame:pro 81 NILASTFIPHPWLS------------------QQDFSRFVLDFLVFGNAFLEKRY-----STTGKVIRLETSPAKYTRRG 137 (344) Q Consensus 81 n~~~~~~~pnp~~~------------------~~~~~~~~~d~ll~Gnay~~~~r-----~~~G~~~~L~pl~~~~~~~~ 137 (344) +....++.+.. ......++.+.+.+|.||+.+.. +..|.+ .+..++|..+... T Consensus 78 ---~~~l~~~gf~~~d~~~~~~~~~i~~~N~~d~~~~~~~~~a~~~G~af~~v~~~~~~~d~~g~~-~i~~~~p~~~~~i 153 (479) T protein:vir:99 78 ---AQQLIVDGYRKTGTNENAKGWDTWRLNQMDKQQFWLNRAVLTFGYAFIKVTSGISPLDGTTVA-RIKCIDPRDAFAI 153 (479) T ss_pred ---HhhcccccccCCCchhhHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCCCcCCCCce-EEEEechhheEEE Confidence 11112222110 12233456788999999998864 334443 4556666554432 Q ss_pred ccCc------eeE-EE------------------cCCceE-------EEEecccEEEecCCCCCCCcccccchhhhHHHH Q lcl|Aclame:pro 138 VEED------VYW-WV------------------PSFNEP-------TAFAPGSVFHLLEPDINQELYGLPEYLSALNSA 185 (344) Q Consensus 138 ~~~~------~~~-~~------------------~~~~~~-------~~~~~~eIih~~~~~~~~~~~G~sp~~~~~~~i 185 (344) .+.. .|. .+ ..++.. +.+..=.|+++++..-. +-+|.|.+......+ T Consensus 154 ydd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~-~~~g~sd~e~v~~li 232 (479) T protein:vir:99 154 WEDPYWDEWPKYLLERQPNGQYWWWTEEDYSIFEFKQGKFIYRETVSHDYGHIPFVRYVNVMDL-RGVCYGDVEPLVTVA 232 (479) T ss_pred ecCCcccceeeEEEeecCceeEEEEecceEEEEEecCCceeeccccccCCCCcceEEeecCCCc-CcCCcchhHHHHHHH Confidence 1111 010 00 011110 01111135666643211 236888887766655 Q ss_pred HHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHH Q lcl|Aclame:pro 186 WLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDD 265 (344) Q Consensus 186 ~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~q 265 (344) +....+..-......-.+.|-.++ .+..+.++... -...+.. ...+++... ..+.++..+.... -.. T Consensus 233 Da~~~~~s~~~~~~~~~a~p~~~i--~G~~~~~~~~~-~~~~~~~-----~~~~i~~~~----~~~~~~~q~~~~~-~~~ 299 (479) T protein:vir:99 233 KAIDKTGLDILLVQHHQSFQIRWA--TGLMLPEGANA-DQEKMRF-----AQESMLISQ----NEKASFGAIPAAP-LDG 299 (479) T ss_pred HHHHHHHHHHHHHHHHhhchhhhh--cCCCccccccc-chhcccc-----ccccceeec----CCCceEEEecccc-hHH Confidence 555444444444444445554444 33222221111 0111111 112333332 2345666554322 233 Q ss_pred HHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHHHHHH--------HHHHHHh----hCcccee Q lcl|Aclame:pro 266 FFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDR--------IREINGW----IGQEVIR 333 (344) Q Consensus 266 f~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~--------ie~ln~~----L~~~~ir 333 (344) |++..+....+|+++=++|++.+|...+ +++ +.+ .+....|.=.+.. |+++.+. .+... . T Consensus 300 ~~~~l~~~i~~i~~~t~~p~~~~g~~~n--~Sg---~Al--~~~~~~l~~ka~~~~~~f~~al~~~~~l~~~~~~~~~-~ 371 (479) T protein:vir:99 300 LLNAYKESLLEFLALAQLPPHIAGQIVN--VAA---DAL--AAGTRQTMQKLFEKQATWKASHNQTMRLVNKIEGRTE-E 371 (479) T ss_pred HHHHHHHHHHHHhccCCCCHHHcccccc--hHH---HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-c Confidence 7777777888888888999999986422 111 111 1211111111111 1111111 11110 1 Q ss_pred ccccc--cccCCC Q lcl|Aclame:pro 334 FKNYS--LDTDNG 344 (344) Q Consensus 334 f~~y~--l~~d~g 344 (344) ...+. +.|-+- T Consensus 372 ~~~~~i~~~w~~~ 384 (479) T protein:vir:99 372 ATDLDFTITWQDV 384 (479) T ss_pred ccceeeeEEecCC Confidence 11122 222222 No 199 >protein:vir:106027 Length: 629 # NCBI annotation: gp9 # Family: family:all:2798 # MgeID: mge:1505 # MgeName: Cooper # Cross-refs: genbank:acc:YP_654906;genbank:gi:109392362;genbank:GeneID:4157055 Probab=75.53 E-value=0.15 Score=25.17 Aligned_cols=330 Identities=14% Similarity=0.076 Sum_probs=143.1 Q ss_pred CCCCC---CCCCC--cchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHH-HHHHhhhhhhh- Q lcl|Aclame:pro 1 MSKKK---GKTPQ--PAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGL-AKSLRAAVHHS- 73 (344) Q Consensus 1 m~~~~---~~~~~--~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l-~~~~~~~~~~~- 73 (344) |.--. .|++. ++....+++...+ +|-..++.+ + .....+.+|..-.-..+.+ .++-.-....+ T Consensus 1 ma~~~lrv~rrpk~~p~~r~l~aasqp~------~P~~~~~~~-~---~g~~~~~~WQ~eAW~~~d~VgElryyvgW~~s 70 (629) T protein:vir:10 1 MAASTLRVSRRPKGSPARRSLTAASQPM------EPGRTPSRQ-V---AGTVVRTSWQNEAWECMDLVGELRYYVGWRAS 70 (629) T ss_pred CCccceeEEecCCCccceeeeccccCCC------Ccchhhchh-h---hhhhhhhhhhHHHHHHHHhhhhHHHHhhhhhh Confidence 43222 22222 2222222222111 221111110 0 0000011111111111111 11111111111 Q ss_pred hh--------------------hhh------cchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCc----e Q lcl|Aclame:pro 74 SP--------------------IYV------KRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGK----V 123 (344) Q Consensus 74 ~~--------------------i~~------k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~----~ 123 (344) +| +.. +........-..|+-..+.++..+.++-+-|..|+.++.-..+. + T Consensus 71 s~Sr~rL~as~idpDtg~ptg~i~ed~p~~~~v~~~v~~iagG~lGqaqLlkr~~~~ltV~GE~~i~il~~~~~~pd~~~ 150 (629) T protein:vir:10 71 SCSRVELIASELDPDTGKPTGGIRDDDPDGLRFLEIVKTMAGGPLGQAQLQKRAAECLTVPGEHRICLLDQGDKNPDGSV 150 (629) T ss_pred hheeeeEEEeeecCCCCCCccccccCchhHHHHHHHHHHhcCccchHHHHHHHHHhheeccCceEEEEeecCCCCCCccc Confidence 11 000 00011111223344445667888889999999999887544332 3 Q ss_pred E-EEEEeCcceeeccccCceeEEEcCCceEEEEeccc--EEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 124 I-RLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPGS--VFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYE 200 (344) Q Consensus 124 ~-~L~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--Iih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~ 200 (344) . ..+.+....+...-. +.--....+|..++|..+. |+.+=.++|..-..--||..+++.++.--.-.++-.++.-+ T Consensus 151 r~~W~vVt~~Ei~~kg~-g~~~i~lpdg~~he~~~~~D~l~RvW~P~Prr~~e~DSpvra~l~~lrEi~r~tk~i~~aak 229 (629) T protein:vir:10 151 RHNWYVVTNDEVKNKGA-GKTDIELPDGTIHEYSKGRDVMFRVWNPRPRRAKEPDSPVRACLDSLREIIRTTKKIRNASK 229 (629) T ss_pred ccceeeecHHHhccccC-ceeEEEcCCCceeeeeCCCeeEEEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHhHHHHH Confidence 3 222333333332111 1122333456667775443 33344667777778899999999988887777777666666 Q ss_pred ccCCCceEEEecCCC-----------C----------CHHHHHHHHHHH----HHhh---cccccccccccCCCCccccc Q lcl|Aclame:pro 201 NGAHAGYIMYVTDAV-----------Q----------DRNDIEMLRENM----VKSK---GRNNFKNLFLYAPQGKADGI 252 (344) Q Consensus 201 Ng~~p~gil~~~~~~-----------~----------~~e~~~~l~~~~----~~~~---g~~n~~~~~vl~~~~~~~g~ 252 (344) .-..-.|||.++... - .....+.|.+.| .... +...+--++++...+ +-.- T Consensus 230 SRL~gnGvlflP~e~slp~~~ap~~~~~Pg~~~p~~~g~aa~d~l~~~l~q~a~aAi~De~S~aA~vPiia~vP~-E~l~ 308 (629) T protein:vir:10 230 SRLIGNGVVFLPQELSLPRATAPVADNQPGAPVPIVDGVAAADELSNLLFQTAAAAVDDEDSQAALIPLLATVPG-EHLQ 308 (629) T ss_pred hHHhhCceeEeccCcccccccCCCCCCCCcccccccCCCcchHHHHHHHHHHHHhhhcCCCCccceeeeEEeech-HHhc Confidence 666666676554321 0 011333344333 2221 222233344433222 3333 Q ss_pred eeeeccCChhHHH-HHHHHHhhHHHHHHHhcCChH-HhccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HH-Hhh- Q lcl|Aclame:pro 253 KIIPLSEVATKDD-FFNIKKASAADLLDAHRIPFQ-LMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE-IN-GWI- 327 (344) Q Consensus 253 ~~~pl~~~~~d~q-f~e~~~~~~~~I~~~fgVPp~-llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln-~~L- 327 (344) +++.|....+-.+ -+.+|+-.+..+|...-|||. ++|+..+.+=|. +=|....=++.-|.|.+..|.+ |. .+| T Consensus 309 ~ikhLkf~~eite~~iktR~daI~RlAmglDispErLLGlGsd~NHWs--AWqI~dedvrlHI~P~l~~ic~Ait~~~Lr 386 (629) T protein:vir:10 309 KIFHLKIGNEITEVEIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWS--AWQIGDEDVQLHIKPVMEVLCAAIYREVLV 386 (629) T ss_pred CeeeeeecCchhHHHHhhHHHHHHHHHhccCCChhheeeccCCcccee--eEEecccceeeecchHHHHHHHHHHhHHHH Confidence 4555555444333 678899999999999999997 667632222121 1111111223335555544432 22 222 Q ss_pred ------Cc----cceeccccccccCCC Q lcl|Aclame:pro 328 ------GQ----EVIRFKNYSLDTDNG 344 (344) Q Consensus 328 ------~~----~~irf~~y~l~~d~g 344 (344) |. .++=|+...|-.|.- T Consensus 387 p~L~~eGiDp~~Yvvw~DaS~Lt~dPd 413 (629) T protein:vir:10 387 ATLRAEGIDPDRYVLWYDASGLTVDPD 413 (629) T ss_pred HHHHHhCCCHHHhEeeecCcccccCCC Confidence 11 122233333333322 No 200 >protein:vir:1236 Length: 483 # NCBI annotation: similar to phage Spp1 gp6 (portal protein) # Family: family:all:125 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510935;genbank:gi:17426269;genbank:GeneID:927380 Probab=75.08 E-value=0.15 Score=25.09 Aligned_cols=287 Identities=8% Similarity=0.003 Sum_probs=111.3 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) +.++++...... .....+-.++ +..|.. .+.+. ..+-.+..|+.+. +-.... T Consensus 68 ~~~~~~~~~~~~-~~~~~~~~ki-~~n~~k--------~Ivd~----~~~~l~G~p~~~~--------------~~d~~~ 119 (483) T protein:vir:12 68 VKEPKPVDATGA-VDPLKPDDRM-ITNFHA--------NLVDQ----KVSYIVGKPIAFK--------------HTDDEV 119 (483) T ss_pred cccccccccccc-cccccccccc-ccchHH--------HHHHH----HhhhhcccCceec--------------cCChHH Confidence 111111000000 0000000000 000000 00000 0111122232221 111111 Q ss_pred hhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---------eeEEEcCCce Q lcl|Aclame:pro 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPSFNE 151 (344) Q Consensus 81 n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~~~~~~~~~ 151 (344) ...+..+..|.+ ......+..+.+.+|.+|..+..+..|++ .+..++|..+-+..+.. ++|....... T Consensus 120 ~~~l~~~~~n~~--~~~~~~~~~~~~~~G~~y~~v~~d~d~~~-~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~ 196 (483) T protein:vir:12 120 VKRIDEVLGNRF--DDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETK 196 (483) T ss_pred HHHHHHHHhccH--HHHHHHHHHHHhhCCeEEEEEEEcCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEeecceE Confidence 122222233322 23455667889999999999999888874 46667776654432211 1122111111 Q ss_pred EEEEecccE-----------------------------------EEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 152 PTAFAPGSV-----------------------------------FHLLEPDINQELYGLPEYLSALNSAWLNESATLFRR 196 (344) Q Consensus 152 ~~~~~~~eI-----------------------------------ih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~ 196 (344) ...+.+..| +.+++ .-.|.|.+......++.-+.+..-.. T Consensus 197 ~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----n~~g~sd~e~v~~liDa~d~~~S~~~ 271 (483) T protein:vir:12 197 VEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISDIFMYKTLIDAYNRRLSDLS 271 (483) T ss_pred EEEEecCeEEEEEEeCCeeeecccccccccccccccCCCCccceEEecC-----CCCCCCchhhHHHHHHHHHHHHHHHH Confidence 111222222 22221 12477777766666655444444444 Q ss_pred HHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHH Q lcl|Aclame:pro 197 KYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAAD 276 (344) Q Consensus 197 ~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~ 276 (344) +.+...+.|-.++ ++... ++....+..++. .+++.+..+ .++++.. .......+.+..+.-.+. T Consensus 272 ~~~~~~~~~~lv~--~g~~~--~~~~~~~~~~~~-------~~~~~~~~~---~~~~~l~--~~~~~~~~~~~~~~l~~~ 335 (483) T protein:vir:12 272 NTFKDSNELTYVL--TNYDD--QELPEFKRLLRY-------YGAIKVSDN---GGVDTIQ--VEVPVENSKKYLDELYQK 335 (483) T ss_pred HHHHHhcCceeee--ecCCc--ccchhHHHhhhh-------ccccccCCC---CcceEEe--ecCCHHHHHHHHHHHHHH Confidence 4445555664444 33222 222222222211 123333332 2344432 233455677777788889 Q ss_pred HHHHhcCChHHhccccccccccccHH----------HHHHHHHHHHHHHHHHHHHHHHHhhCccceeccccccccCCC Q lcl|Aclame:pro 277 LLDAHRIPFQLMGGKPENVGSLGDIE----------KVAKVFVRNELIPLQDRIREINGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 277 I~~~fgVPp~llG~~~~~~~~~~n~e----------~~~~~f~~~~l~P~~~~ie~ln~~L~~~~irf~~y~l~~d~g 344 (344) |+..-++|....+-..++ .++-.++ ...+..+...+.-+++.+ ...++... .+...++.|+.. T Consensus 336 I~~~s~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~li---~~~~~~~~-~~~~i~v~f~~~ 408 (483) T protein:vir:12 336 IMLFGQAVDFSSDKFGSA-PSGVALEFLYTNLNLKADKLARKAKVAIQELLWFV---FEHFDIKG-EHKDVDISFNYN 408 (483) T ss_pred HHHHhCCCCCCccccccC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCC-ccceeeEEeCCC Confidence 999999986443221111 1110010 001111122222222222 22223221 234455666666 No 201 >protein:vir:106571 Length: 499 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958580;genbank:gi:41179240;genbank:GeneID:2717107 Probab=71.91 E-value=0.19 Score=24.54 Aligned_cols=284 Identities=11% Similarity=0.024 Sum_probs=104.2 Q ss_pred CCCCCCCCCCcchhhcccccc-----ceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAP-----KMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSP 75 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~-----~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~ 75 (344) +.++.+....+..+... .-+ ....|-||+|..+... T Consensus 49 ~~~~~~~~~~~~~ki~~-n~~~~Iv~~~~~~l~g~p~~~~~~-------------------------------------- 89 (499) T protein:vir:10 49 EKHEFDNATVEAANVMV-NHAKYITDMNVGFMTGNPVKYVAE-------------------------------------- 89 (499) T ss_pred hcCCcCcCCCCcceeec-chHHHHHHHHhhhhcccCceeecC-------------------------------------- Confidence 32222111110000000 000 0011223332211000 Q ss_pred hhhcchh-hHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCce----------------EEEEEeCcceeeccc Q lcl|Aclame:pro 76 IYVKRNI-LASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKV----------------IRLETSPAKYTRRGV 138 (344) Q Consensus 76 i~~k~n~-~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~----------------~~L~pl~~~~~~~~~ 138 (344) ..+.+. +...+..|. .......+..+.+.+|.+|..+..+..|.+ ..+..++|..+-+.. T Consensus 90 -~~~~~~~l~~~~~~n~--~~~~~~~~~~~~~~~G~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~p~~~~~v~ 166 (499) T protein:vir:10 90 -KGKNIDDILEVFNQID--IHKHDIELEKDLSVFGYGYELLYLKKTDPISVRDELGNEKLTPNTELKIEVIDPRATVVVC 166 (499) T ss_pred -ChhHHHHHHHHHhhcC--HhHHHHHHHHHHHhcCceEEEEEecccccccccccccccccccccceEEEEEcccceEEEe Confidence 000000 111111221 123466677889999999999888777643 234445554432211 Q ss_pred cC---c------eeEEEcC--CceE----EEEecccEEEecCCC----------------C---------CCCcccccch Q lcl|Aclame:pro 139 EE---D------VYWWVPS--FNEP----TAFAPGSVFHLLEPD----------------I---------NQELYGLPEY 178 (344) Q Consensus 139 ~~---~------~~~~~~~--~~~~----~~~~~~eIih~~~~~----------------~---------~~~~~G~sp~ 178 (344) +. . +||.... ++.. ..+.++.|.+++... + .+...|.|.+ T Consensus 167 ~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~d~ 246 (499) T protein:vir:10 167 DDTVEHDPLFAVFTQEKKDLEGNTNGYSITVYMPQRIVEYRTKTTMEVSANDPIVYDGENLFGAVPIIEFRNNEERQGDF 246 (499) T ss_pred cCCCCcceEEEEEEEEEeecCCCceEEEEEEEeCCeEEEEEecCCccccCcceecccccCCCCccceEEecCCCCCCCch Confidence 11 0 1121111 1110 112233333321000 0 0112466666 Q ss_pred hhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeecc Q lcl|Aclame:pro 179 LSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLS 258 (344) Q Consensus 179 ~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~ 258 (344) ..+...++.-+.+..-..+.+...+.|-.++ ++..++++. +.. ..+ +.+.+..+.. +++.+++.+. T Consensus 247 e~v~~liD~~~~~~S~~~~~~~~~~~~~lv~--~G~~~~~~~-~~~-~~~-------~~~~~~~~~~---~~~~d~~~l~ 312 (499) T protein:vir:10 247 EQLISLIDAYNLLQTDRISDKEAFVDALLVT--FGFGLGDDK-DDI-QRL-------KRGAIEAPPR---EEGADIEWLT 312 (499) T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhcCceeee--ecCcccccc-chh-hhh-------hhcceeccCC---CCCCcceEEe Confidence 6666555544444333444445555565444 454433321 110 111 1112222211 2233344444 Q ss_pred CChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHH----------HHHHHHHHHHHHHHHHHHHHHHHhhC Q lcl|Aclame:pro 259 EVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIE----------KVAKVFVRNELIPLQDRIREINGWIG 328 (344) Q Consensus 259 ~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e----------~~~~~f~~~~l~P~~~~ie~ln~~L~ 328 (344) .......+.+..+.-.+.|...-++|..--+-..++ .++-.++ ...+..+...+.-+++.+.. .++ T Consensus 313 ~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~gn-~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~---~~~ 388 (499) T protein:vir:10 313 KSFDETQVNLLSQSIENDIHKISYVPNMNDEKFMGN-VSGEAMKFKLFGLENLLSIKQRYFFDGLRRRLKLIQT---IVN 388 (499) T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCcccCCchhhccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHh Confidence 444455566777777888888888885221111111 1110010 01112222222222222222 222 Q ss_pred ccc--eeccccccccCCC Q lcl|Aclame:pro 329 QEV--IRFKNYSLDTDNG 344 (344) Q Consensus 329 ~~~--irf~~y~l~~d~g 344 (344) ..- ..+....+.|+.. T Consensus 389 ~~~~~~d~~~i~i~f~~~ 406 (499) T protein:vir:10 389 IKGANDDASGCKISLVAN 406 (499) T ss_pred ccCCccccccceEEeCCC Confidence 111 1233445566666 No 202 >protein:vir:3648 Length: 695 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705643;genbank:gi:23752328;genbank:GeneID:955749 Probab=71.11 E-value=0.2 Score=24.42 Aligned_cols=320 Identities=13% Similarity=0.121 Sum_probs=116.3 Q ss_pred CCCCCCCCCCcchhhc-cccccc-eeEEE----cCCceec------cC-cchhhhhhhhhccchhhhccccHHHHHHHHh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTM-TASAPK-MEAFT----FGEPVPV------LD-RRDILDYVECISNGRWYEPPVSFTGLAKSLR 67 (344) Q Consensus 1 m~~~~~~~~~~~~~~~-~~~~~~-~~~f~----~~~p~~~------~~-~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~ 67 (344) ..++...-.-.++... ++..-+ ...|. -+.|.-- ++ ++...|.+..+.+..+. ..-.|+.+.. T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~----Gy~~la~laQ 121 (695) T protein:vir:36 46 FARRGALNALDAAPVVEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFP----GFPTLVLLAQ 121 (695) T ss_pred hhhcccccccccccccCCCcccccceeceecccccCccccchhhhhhcccccccccchhhhccCcc----hHHHHHHHhh Confidence 1111111000010000 000000 01111 0111000 00 11112222111111110 1111222221 Q ss_pred hhhhh-------hhhh----------hhcchh--hHHhhhcCC----------------CCCHHHHHHHHHHHHhcCCce Q lcl|Aclame:pro 68 AAVHH-------SSPI----------YVKRNI--LASTFIPHP----------------WLSQQDFSRFVLDFLVFGNAF 112 (344) Q Consensus 68 ~~~~~-------~~~i----------~~k~n~--~~~~~~pnp----------------~~~~~~~~~~~~d~ll~Gnay 112 (344) ...+- .-|. ..+... +...-.-.+ +.-+.-++..+..--+||-+. T Consensus 122 ~~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqik~L~~e~erL~V~~~l~eaik~aRlfGGa~ 201 (695) T protein:vir:36 122 LPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAH 201 (695) T ss_pred ccchhhHHHHHHHHhhcccceecccchhhhhhccccccccccccCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccceE Confidence 11110 0010 000000 000000000 001122223333334677776 Q ss_pred EEEeeCC-----------------CCceEEEEEeCcceeeccccC-----------ceeEEEcCCceEEEEecccEEEec Q lcl|Aclame:pro 113 LEKRYST-----------------TGKVIRLETSPAKYTRRGVEE-----------DVYWWVPSFNEPTAFAPGSVFHLL 164 (344) Q Consensus 113 ~~~~r~~-----------------~G~~~~L~pl~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~eIih~~ 164 (344) +++.-.+ .|....|..+++.++.+.... -.||++. |. .+...-++.+. T Consensus 202 ~~i~i~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~--G~--kIH~SRL~~f~ 277 (695) T protein:vir:36 202 PYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--GT--EVHATRLHTIV 277 (695) T ss_pred EEEEeccCccccccccccccccccCcceeeeEeecccccccchhhhccchhhccCCCceEEEe--ce--EEeeeeEEEec Confidence 5553322 234445777888777654321 1245553 22 23344443333 Q ss_pred CCCC------CCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEec--CCCCCHHHHHHHH---HHHHHhhc Q lcl|Aclame:pro 165 EPDI------NQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVT--DAVQDRNDIEMLR---ENMVKSKG 233 (344) Q Consensus 165 ~~~~------~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~--~~~~~~e~~~~l~---~~~~~~~g 233 (344) .... .-.+.|+|-.+.+...+..............+.- +-.++ ++. ....+..+. .+. +.++.++ T Consensus 278 g~plPd~LKp~y~~~GiSv~q~~~e~V~~~~rT~~~v~~Li~~~-~v~~l-k~dla~aL~~g~~~-~l~~R~eli~~~R- 353 (695) T protein:vir:36 278 SRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQF-SVSGI-LMDLAQALMPGANV-DLSMRAELINRYR- 353 (695) T ss_pred CCCchhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHHHHHhh-hHHHH-HHHHHHhhcChhHH-HHHHHHHHHHHhc- Confidence 2211 1135699988888877766555555555444332 22222 110 011112221 222 2234443 Q ss_pred ccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChH-HhccccccccccccHHHHHHHHHH-- Q lcl|Aclame:pro 234 RNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQ-LMGGKPENVGSLGDIEKVAKVFVR-- 310 (344) Q Consensus 234 ~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~-llG~~~~~~~~~~n~e~~~~~f~~-- 310 (344) +|.+ ++++.. +.-+|...+.+-. .+-++.....+.||.+-+||.. |+|..+.+= .++-|.-.+.||. T Consensus 354 -sn~G-~~llDk----~~Eefeq~stslS--GLddVi~qf~q~VAgaa~IPltkLfGqSPkGl--NATGE~D~rnYYD~I 423 (695) T protein:vir:36 354 -DNRN-ILFLDK----ATEEFFQFNTPLS--GLDALQAQAQEQMSAVSHIPLIKLLGITPTGL--NASSEGEIRVWYDYV 423 (695) T ss_pred -Cccc-eEEEec----CCcceEEEecccC--CHHHHHHHHHHHHHhhhcCchhhhhccCcccc--cccchhhHHHHHHHH Confidence 3444 444431 1233444443222 1223344456789999999986 668766432 1344445555554 Q ss_pred -----HHHHHHHHHHHH-HHHhhCccceeccccccccCCC Q lcl|Aclame:pro 311 -----NELIPLQDRIRE-INGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 311 -----~~l~P~~~~ie~-ln~~L~~~~irf~~y~l~~d~g 344 (344) ..|+|.++++-+ |-......+ . .++.++|..= T Consensus 424 ~s~Qe~~L~p~L~rl~~ii~rS~~G~i-d-pdi~~~fnPL 461 (695) T protein:vir:36 424 RAYQRNALQQLMNDVIVMIQLSLFGAV-D-PSIKWQWNAL 461 (695) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-C-CcceEEeCCC Confidence 456777766544 333322222 1 1233344322 No 203 >protein:vir:7987 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817341;genbank:gi:29565769;genbank:GeneID:1258964 Probab=69.33 E-value=0.22 Score=24.14 Aligned_cols=292 Identities=11% Similarity=0.030 Sum_probs=97.4 Q ss_pred CCCCCCC-CCCcchhhccccccceeEEEcCCceeccCcc-hhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKKGK-TPQPAAKTMTASAPKMEAFTFGEPVPVLDRR-DILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYV 78 (344) Q Consensus 1 m~~~~~~-~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~ 78 (344) ..+..-+ .+.......... +...+.+.. -+.|.. .+...-.|+.. ++-.. T Consensus 32 ~g~~~i~~~~~~~~~~~~~~----------~~~~~~n~~~~ivd~~----~~~l~~~g~~~--------------~~~~d 83 (456) T protein:vir:79 32 NGDAPLPELTRNTSAAWRSF----------QREARTNWGLMVRDSV----ADRIIPNGITV--------------GGSAD 83 (456) T ss_pred hccCChhhcCcccChhhchh----------hhhhhcchHHHHHHHH----HhhhccCCeec--------------CCCCC Confidence 1111000 000000000000 000000000 000000 00011111111 00000 Q ss_pred c-ch-hhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---------eeEEEc Q lcl|Aclame:pro 79 K-RN-ILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVP 147 (344) Q Consensus 79 k-~n-~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~~~~~ 147 (344) . .+ .+...+..|.+ ......++.+.+.+|.||+.+..+..|.+ .+..++|..+....++. .+|... T Consensus 84 ~~~~~~~~~~~~~n~~--d~~~~~~~~~a~~~G~a~~~~~~~edg~~-~i~~~~p~~~~~i~d~~~~~~~~~~~~~~~~~ 160 (456) T protein:vir:79 84 SDLALRARRIWRDNRM--DSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRSAMRWWRDL 160 (456) T ss_pred ccHHHHHHHHHHhcCh--hHHHHHHHHHHhhcCeeEEEEeeCCCCce-EEEEeccceeEEEEcCCCCCceEEEEEEEEec Confidence 0 00 01111222221 12345677889999999999988888876 46777776654433211 011111 Q ss_pred CC-----------ceEEE----------------------EecccEEEecCCCC---CCCcccccchhhhHHHHHHHHHH Q lcl|Aclame:pro 148 SF-----------NEPTA----------------------FAPGSVFHLLEPDI---NQELYGLPEYLSALNSAWLNESA 191 (344) Q Consensus 148 ~~-----------~~~~~----------------------~~~~eIih~~~~~~---~~~~~G~sp~~~~~~~i~~~~~a 191 (344) .. +.... ....++-|.-..-| .....|+|.+......++....+ T Consensus 161 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~~~gd~e~v~~liD~~~~~ 240 (456) T protein:vir:79 161 DAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRA 240 (456) T ss_pred CCceeEEEEEcCCceEEEEEEEEeeccccceeeeccCCceeecccccCCCCceeEEEecCCCCCchhhhhHHHHHHHHHH Confidence 11 00000 00001111100000 01123666666654444332222 Q ss_pred HHHHHHHHHccCCCceEEEecCCCCCH----HHHHHH--HHHHHHhhcccccccccccCCCCccccceeeeccCChhHHH Q lcl|Aclame:pro 192 TLFRRKYYENGAHAGYIMYVTDAVQDR----NDIEML--RENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDD 265 (344) Q Consensus 192 ~~~~~~~f~Ng~~p~gil~~~~~~~~~----e~~~~l--~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~q 265 (344) ..-........+.|--++ .+...+. +.-+.+ ...|.... +.++.+ +.+.++..+...+- .. T Consensus 241 ~s~~~~~~~~~a~~~~~~--~G~~~~~~~~d~~g~~i~~~~~~~~~~-----~~~~~~-----~~~~~~~q~~~~~~-~~ 307 (456) T protein:vir:79 241 ELQLLSTMAIQAFRQRAL--KSSEHRLPKVDENGNAIDYASIFEAAP-----GALWEL-----PPGVDIWESQTNDF-TP 307 (456) T ss_pred HHHHHHHHHHHhhHHHHH--hcCCcccccccccccccchhhhhhhhc-----cccccC-----CCCcceeeecccCh-HH Confidence 211111222222222222 1111111 111111 11222211 123332 23445555443322 33 Q ss_pred HHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHHHHHHHH--------HHHHh---h-Ccccee Q lcl|Aclame:pro 266 FFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIR--------EINGW---I-GQEVIR 333 (344) Q Consensus 266 f~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie--------~ln~~---L-~~~~ir 333 (344) |.+..+....+|++.=++|++.+|....+. ++ +.. .+....|.=.+...+ ++.+. + |. .. T Consensus 308 ~~~~l~~~i~~i~~~t~~p~~~~~~~~~N~-Sg---~Al--~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~--~~ 379 (456) T protein:vir:79 308 MLSAIKEHIRQLSSATKTPLPMLMPDSANQ-SA---EGA--HNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE--SV 379 (456) T ss_pred HHHHHHHHHHHHHhhcCCChhHhcccccCc-HH---HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--Cc Confidence 888899999999999999999998543222 21 111 111111111111111 11110 0 11 01 Q ss_pred ccccccccCCC Q lcl|Aclame:pro 334 FKNYSLDTDNG 344 (344) Q Consensus 334 f~~y~l~~d~g 344 (344) ....+..|.+. T Consensus 380 ~~~i~v~w~~~ 390 (456) T protein:vir:79 380 EDTVDVSFESP 390 (456) T ss_pred cccceEEeCCC Confidence 12223333333 No 204 >protein:vir:105461 Length: 470 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529871;genbank:gi:90592611;genbank:GeneID:3974525 Probab=67.72 E-value=0.25 Score=23.91 Aligned_cols=274 Identities=8% Similarity=-0.010 Sum_probs=108.8 Q ss_pred CCCCCCCCCCc---chhhccccccc------------eeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHH Q lcl|Aclame:pro 1 MSKKKGKTPQP---AAKTMTASAPK------------MEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKS 65 (344) Q Consensus 1 m~~~~~~~~~~---~~~~~~~~~~~------------~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 65 (344) +.++..+.... .......+-.+ ...|-||+|..+... T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~G~p~~~~~~---------------------------- 89 (470) T protein:vir:10 38 TTRNNGKAKLNKEGKKDPLRSADNRIPSNFYQLLVDQEAGYVASVFPDIDVG---------------------------- 89 (470) T ss_pred hccccchhcccccccccccccCCcccccchHHHHHHhhhhheeccceeeecC---------------------------- Confidence 22221110000 00000000000 012333333221100 Q ss_pred HhhhhhhhhhhhhcchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---- Q lcl|Aclame:pro 66 LRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---- 141 (344) Q Consensus 66 ~~~~~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---- 141 (344) ..+.+..+..+..+. ....+..+..+.+.+|.||.++..+..|++ .+..++|..+-+..+.. T Consensus 90 -----------d~~~~~~l~~~~~~~--~~~~~~~l~~~~~~~G~a~~~~y~d~~~~~-~~~~~~p~~~~~v~d~~~~~~ 155 (470) T protein:vir:10 90 -----------KDADNKKIIDVLGDD--RALTLNGLLVDSSNAGRAWLHYWIDEDGNF-RYGIIQPDQITPIYATTLDNK 155 (470) T ss_pred -----------chHHHHHHHHHHhhh--HHHHHHHHHHHHhhcCeeEEEEEecCCCce-EEEEEcccceEEEEcCCCCCc Confidence 000001111111111 112344566788899999999999888864 45666666555433221 Q ss_pred -----eeEEEcC-Cc-eE----EEEecccE---------------------------------------------EEecC Q lcl|Aclame:pro 142 -----VYWWVPS-FN-EP----TAFAPGSV---------------------------------------------FHLLE 165 (344) Q Consensus 142 -----~~~~~~~-~~-~~----~~~~~~eI---------------------------------------------ih~~~ 165 (344) +||.... .+ .. ..+.++.+ +|+++ T Consensus 156 ~~a~ir~y~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n 235 (470) T protein:vir:10 156 LLGILRSYKQLDPDSGKYFTVHEYWTDKEAQFFRTNATDSTVIEPYNIITSYDLSAGYETGQSNTLKHNFGRVPFIEFSK 235 (470) T ss_pred eEEEEEEEEeeecCCceEEEEEEEEcCCcEEEEEeecCcceeccccccccccccccccccccccccccCCCeeeEEEeec Confidence 1222211 11 10 01122222 33332 Q ss_pred CCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCC Q lcl|Aclame:pro 166 PDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAP 245 (344) Q Consensus 166 ~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~ 245 (344) .-.|.|.+......++.-+.+..-..+.+..-+.|-.+| ++...++ .......++.. +++.+.. T Consensus 236 -----n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lvl--~g~~~~~--~~~~~~~~~~~-------~~i~~~~ 299 (470) T protein:vir:10 236 -----NKYRLPELNKYKGLIDAYDDIYNGFINDLDDVQTVILVL--TNYGGAD--LHQFMNDLRKY-------KSIKINN 299 (470) T ss_pred -----CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCcceee--ecCCccc--cchhhhhhhhc-------CeEeccC Confidence 124777777666666654444444444445555565554 4433221 11122222211 1222222 Q ss_pred C--CccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHH--------------- Q lcl|Aclame:pro 246 Q--GKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVF--------------- 308 (344) Q Consensus 246 ~--~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f--------------- 308 (344) . +...++++.. .......+....+.-.+.|...-++|..-- .+ ++|.......+ T Consensus 300 ~~~~~~~~~~~lt--~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~----~~---~gn~Sg~Alk~~~~~l~~k~~~~~~~ 370 (470) T protein:vir:10 300 TGNGDNSGVDKLQ--IDIPVEARDDALKITRKNIFLFGQGIDPAN----FE---SSNASGVAIKMLYSHLELKAAKTQTY 370 (470) T ss_pred CCCCcCceeEEEe--ecCChHHHHHHHHHHHHHHHHHhCCCCCCc----cc---cccchHHHHHHHHHHHHHHHHHHHHH Confidence 2 2233445444 333345566777888889999888885311 11 12222222211 Q ss_pred HHHHHHHHHHHHHHHHHhhCccceeccccccccCCC Q lcl|Aclame:pro 309 VRNELIPLQDRIREINGWIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 309 ~~~~l~P~~~~ie~ln~~L~~~~irf~~y~l~~d~g 344 (344) ++..|+-+++. +...|+..-..+....+.|+.. T Consensus 371 ~~~~l~~~~~~---i~~~l~~~~~d~~~i~i~f~~~ 403 (470) T protein:vir:10 371 FEHAINELVRA---IMRYLNFSDADKRHISQHWTRT 403 (470) T ss_pred HHHHHHHHHHH---HHHHhcccCcccceeeEEeccC Confidence 11122111111 2223333222233445666666 No 205 >protein:vir:4782 Length: 522 # NCBI annotation: putative minor capsid protein 1 # Family: family:all:898 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150162;swissprot:trembl:q94m49;genbank:gi:26553451;uniprot:Q94M49;genbank:GeneID:955983 Probab=67.09 E-value=0.26 Score=23.82 Aligned_cols=287 Identities=13% Similarity=0.132 Sum_probs=118.7 Q ss_pred CCCCCC--------------CCCCcchhhccccccceeEEEcCCceecc-CcchhhhhhhhhccchhhhccccHHHHHHH Q lcl|Aclame:pro 1 MSKKKG--------------KTPQPAAKTMTASAPKMEAFTFGEPVPVL-DRRDILDYVECISNGRWYEPPVSFTGLAKS 65 (344) Q Consensus 1 m~~~~~--------------~~~~~~~~~~~~~~~~~~~f~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 65 (344) +.+... +....-++..... .--+-|++|..+. +.....+++ .++ T Consensus 50 ~g~~~~~~~~~~~~~~~~~~~~slnl~~~i~~~---~A~lv~~e~~~i~v~d~~~~~~l------------------~~~ 108 (522) T protein:vir:47 50 QSKWDDVQYKNTDGDIKSRPMNHLPIARTASKK---IASLVYNEQATITTKNEILQKFL------------------DDM 108 (522) T ss_pred cCCcccccccccCcchhcccceecchHHHHHHH---HhhhhcCCcceeecCChHHHHHH------------------HHH Confidence 222111 0011111111111 1123334433221 111111111 000 Q ss_pred HhhhhhhhhhhhhcchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeec--------- Q lcl|Aclame:pro 66 LRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRR--------- 136 (344) Q Consensus 66 ~~~~~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~--------- 136 (344) +..|. ....++..+.+.+..|.+++.+..+. |+ +.+..+++...-+ T Consensus 109 ---------------------l~~n~--f~~~~~~~~e~a~a~G~~a~k~~~d~-~~-~~i~~v~ad~~~P~~~~~~~~~ 163 (522) T protein:vir:47 109 ---------------------LTNDR--FNKNFERYLESCLALGGLAMRPYIDG-DK-VRVAFIQAPVFFPLESNTQDVS 163 (522) T ss_pred ---------------------Hhhcc--hHHHHHHHHHHhhccCCEEEEEEEcC-Cc-eEEEEEcCCceEEEEEcCCceE Confidence 11111 12335566666666676666555443 21 1222222211100 Q ss_pred -----------cccCceeEEE------------------------------cC-----CceEEEEe--------ccc--- Q lcl|Aclame:pro 137 -----------GVEEDVYWWV------------------------------PS-----FNEPTAFA--------PGS--- 159 (344) Q Consensus 137 -----------~~~~~~~~~~------------------------------~~-----~~~~~~~~--------~~e--- 159 (344) ......||.. .. -|..+.+. +.+ T Consensus 164 e~a~~~~~~~~~~~~~~~yt~lE~he~~~~~~~~~~~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e~~~l~~~~~~ 243 (522) T protein:vir:47 164 SAAILTKTIKSEGRKNVYYTLVEFHEWVTADGQETGSTNDKKYYRITNELYRSDVNDVLGQRVNLSELDKYKNLEPVTVF 243 (522) T ss_pred EEEEEEEEEeecccceeEEEEEEEeeecccccccccccccCCceEEEEEEeecCCCcccCccccccccccccCCCCceEe Confidence 0011112210 00 01111110 011 Q ss_pred -------EEEecCCCCCC----CcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceE----EEecCCCCCHHHHHHH Q lcl|Aclame:pro 160 -------VFHLLEPDINQ----ELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYI----MYVTDAVQDRNDIEML 224 (344) Q Consensus 160 -------Iih~~~~~~~~----~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gi----l~~~~~~~~~e~~~~l 224 (344) ..|+|.+-++. ..+|+|.+..+...+......-.-..+-|+-|-+.-.| |...+...+.+. .. T Consensus 244 ~~~~~Plf~y~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~~g~~--~~ 321 (522) T protein:vir:47 244 ENLSRPLFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINRSYDEFMWEVRMGQRRVIVPEHLTQRQYQRPDGTI--DF 321 (522) T ss_pred CCCCcceEEEecCCcccccccCCCcCCchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCCCCccc--cc Confidence 23666553332 35799999998888766555544445555666543111 221111000000 00 Q ss_pred HHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHH Q lcl|Aclame:pro 225 RENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKV 304 (344) Q Consensus 225 ~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~ 304 (344) ...|. -..+++.-.+....++-+++.++..-.+.++.+.-+...+.|+...|++|..+|...++. .++.+. T Consensus 322 ~~~fd------~~~~~f~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~i~~~~gls~~tf~~~~~~~---kTAtEi 392 (522) T protein:vir:47 322 RPRFD------VEQNVYMQIGGSSMDAGGITDLTSPIRANDYILAISEGLKLFEMQIGVSSGMFTFDGQGM---KTATEI 392 (522) T ss_pred ccccC------cccceEeecCCCCCCCCcceeeccccChHHHHHHHHHHHHHHHHHhCCCccccCcccccc---ccHHHH Confidence 00010 001111111111123334666666677889999999999999999999999998754332 334443 Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHH---hhCccceeccccccccCCC Q lcl|Aclame:pro 305 -------------AKVFVRNELIPLQDRIREING---WIGQEVIRFKNYSLDTDNG 344 (344) Q Consensus 305 -------------~~~f~~~~l~P~~~~ie~ln~---~L~~~~irf~~y~l~~d~g 344 (344) .+..++.+|.-++..+.++-. .++.....-.+..++|++| T Consensus 393 ~s~~~~~~~t~~~~~~~~~~al~~lv~~i~~l~~~~~~~~~~~~~~~~i~v~f~D~ 448 (522) T protein:vir:47 393 VSENSDTYQMRSSIVALVEQSIKELCVSMCELGKAVGVYSGEIPELDDISVNLDDG 448 (522) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEEcCCC Confidence 334455555555555544322 1222222223345788888 No 206 >protein:vir:5665 Length: 511 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899604;genbank:gi:34419591;genbank:GeneID:2546036 Probab=63.55 E-value=0.32 Score=23.33 Aligned_cols=327 Identities=14% Similarity=0.108 Sum_probs=144.3 Q ss_pred CCCCCC--------CCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhh Q lcl|Aclame:pro 1 MSKKKG--------KTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHH 72 (344) Q Consensus 1 m~~~~~--------~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~ 72 (344) ++-..+ +..-+++...-.++ ....-+.-.+++.+.-+..|+ -.+.++.-..|.+.+|.-+.| T Consensus 5 ~~~de~~~~~~~~~~~~S~~~p~~~DGa---~~i~~~~~~~~~~g~~~~~~~-------~~~~~~~~~eLI~~YR~ma~~ 74 (511) T protein:vir:56 5 TKEEEQDIQKIEKNPVRSFSAPDNVDGA---KEIHTNLLAPQLGHAIIPSDA-------QSEGTIPVKELIKSYRALAEY 74 (511) T ss_pred cchhhhhhhhhccCCcccccCCCCCCCc---eEEecccccceecceeccccc-------cccCccchHHHHHHHHHHhhc Confidence 111000 00000100000010 001001111111111111111 012333335677777765554 Q ss_pred h---hhhhhcchhhHH----------hhhcCCCCC------HHHH-------------HHHHHHHHhcCCceEEEeeCCC Q lcl|Aclame:pro 73 S---SPIYVKRNILAS----------TFIPHPWLS------QQDF-------------SRFVLDFLVFGNAFLEKRYSTT 120 (344) Q Consensus 73 ~---~~i~~k~n~~~~----------~~~pnp~~~------~~~~-------------~~~~~d~ll~Gnay~~~~r~~~ 120 (344) . +++..-.|...- .+....... .+.| ..++..|.+.|..|..++-|.. T Consensus 75 pEvd~Av~eIvne~iv~d~~~~pV~l~ld~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fHkiid~k 154 (511) T protein:vir:56 75 HEVDDAIQEIVDEAIVYENDKEVVWLNLDNTDFSENIKAKINEEFDRVVSLLQMRKHGYKWFRKWYVDSRIYFHKILDKD 154 (511) T ss_pred cchhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEeccc Confidence 3 233222222110 000000000 1112 2334577889999999987766 Q ss_pred CceEEEEEeCcceeecccc-------C-------ceeEEEcCC--------------ceEEEEecccEEEec--CCC-CC Q lcl|Aclame:pro 121 GKVIRLETSPAKYTRRGVE-------E-------DVYWWVPSF--------------NEPTAFAPGSVFHLL--EPD-IN 169 (344) Q Consensus 121 G~~~~L~pl~~~~~~~~~~-------~-------~~~~~~~~~--------------~~~~~~~~~eIih~~--~~~-~~ 169 (344) ..+.+|..|+|..++.... + ..||.+... .....++.+.|.|.. ..+ +. T Consensus 155 ~GI~eLr~lDPr~i~~vr~i~~~~~~~~~v~~~~~ey~~Y~~~~~~~~~~~~~~~~~~~~vkI~~daI~y~hSGL~d~~~ 234 (511) T protein:vir:56 155 NNIIELRPLNPMKMELVREIQKETIDGVEVVKGTLEYYVYKQSDYKMPSWMSATNRAQTSFRIPKDAIVFAHSGLMRGCA 234 (511) T ss_pred cceeehhhcCcccchhhhhhhcccccccccccceeeeeEecCCCcccCcccccccccccceeechhheeeecccceeccC Confidence 6799999999987764211 0 123433321 134678889996554 332 34 Q ss_pred CCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCC-CHHHHHHHHHHHHHhh---------c-ccccc Q lcl|Aclame:pro 170 QELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQ-DRNDIEMLRENMVKSK---------G-RNNFK 238 (344) Q Consensus 170 ~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~-~~e~~~~l~~~~~~~~---------g-~~n~~ 238 (344) +.-+.+|-|..|...+..-.-.++..-=|=-.-|.=.-|+++.=+.+ ...+.+=+++-+.+++ | ..|.+ T Consensus 235 ~~g~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYl~~iM~k~kNklVYDa~TGev~ddr 314 (511) T protein:vir:56 235 DDPYIIGYLDRAIKPANQLKMLEDALVIYRLARAPERRVFYVDVGNLPTQKAQQYVNGIMQNVKNRVVYDTQTGQVKNTT 314 (511) T ss_pred CCCeeeccchhhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCceeccch Confidence 45567888888877766555555443333333344455666543333 3344444555554432 2 12222 Q ss_pred cccc-cC-------CCCccccceeeeccC--ChhHHHHHHHHHhhHHHHHHHhcCChHHhcccccccccc--c---cHHH Q lcl|Aclame:pro 239 NLFL-YA-------PQGKADGIKIIPLSE--VATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSL--G---DIEK 303 (344) Q Consensus 239 ~~~v-l~-------~~~~~~g~~~~pl~~--~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~--~---n~e~ 303 (344) +.+- ++ .|| .|.+++.|.- +--+++=+ .+-+..+-++.+||.+.++-- ++++++ + .+.. T Consensus 315 k~msMlEDyWLpRReGg--rgTEItTLpGgqnlgem~DV---~YF~kKLy~aLnVP~SRl~~e-~q~~~f~~Gr~~EItR 388 (511) T protein:vir:56 315 NAMSMLEDYYLPRREGS--KGTEVSTLPGGQSLGDIEDV---LYFNRKLYKAMRIPTSRAASE-DQTGGINFGQGAEITR 388 (511) T ss_pred hhhhhHhhhcccccCCC--CccceeeccccCCcChHHHH---HHHHHHHHHHhCCCcccccCC-CCccccccccchhhhH Confidence 2222 11 222 2444444433 33333333 345677899999999999632 222222 2 3333 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhCcc-----cee---cc------ccccccCCC Q lcl|Aclame:pro 304 VAKVFVRNELIPLQDRIREIN-GWIGQE-----VIR---FK------NYSLDTDNG 344 (344) Q Consensus 304 ~~~~f~~~~l~P~~~~ie~ln-~~L~~~-----~ir---f~------~y~l~~d~g 344 (344) ...-|.+ -|.-+..++.+++ +.|-.+ ++. |+ -|++.-|+= T Consensus 389 DEiKF~K-FI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~ 443 (511) T protein:vir:56 389 DELKFTK-FVKRLQTKFETVITDPLKHQLIVNNIITEEEWDANHEKLYVVFNQDSY 443 (511) T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecch Confidence 3344544 3666777777643 333221 111 21 133333333 No 207 >protein:vir:102602 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654999;genbank:gi:109392189;genbank:GeneID:4157224 Probab=55.49 E-value=0.48 Score=22.34 Aligned_cols=308 Identities=10% Similarity=0.027 Sum_probs=101.3 Q ss_pred CCC------------CCCCC-CCcc-hhhccccccceeEEE--cCCceeccCcchhhhhhhhh---ccchhhhccccHHH Q lcl|Aclame:pro 1 MSK------------KKGKT-PQPA-AKTMTASAPKMEAFT--FGEPVPVLDRRDILDYVECI---SNGRWYEPPVSFTG 61 (344) Q Consensus 1 m~~------------~~~~~-~~~~-~~~~~~~~~~~~~f~--~~~p~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~ 61 (344) |+. +.... ++-. -..--.....+.-.. +-+....+.+.-+..+...+ ..+..+-.|+.+. T Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~~~~~~~- 79 (456) T protein:vir:10 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVG- 79 (456) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhcCcccChhhhhhhhhhhcchHHHHHHHHHhhhccCCeecC- Confidence 000 00000 0000 000000000000000 00000000000000000000 0111111222110 Q ss_pred HHHHHhhhhhhhhhhhh-cch-hhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeecccc Q lcl|Aclame:pro 62 LAKSLRAAVHHSSPIYV-KRN-ILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVE 139 (344) Q Consensus 62 l~~~~~~~~~~~~~i~~-k~n-~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~ 139 (344) +-.. +.. .+...+..|.+ ......++.+.+.+|.||..+..+..|.+. +..++|..+.+..+ T Consensus 80 -------------~~~d~~~~~~~~~i~~~N~~--d~~~~~~~~~a~i~G~ay~~v~~d~~g~~~-i~~~~p~~~~~i~d 143 (456) T protein:vir:10 80 -------------GSADSDLALRARRIWRDNRM--DSVCKQWVKYGLDFGESYLTCWRRDDGTAT-ITADSPETMVVSVD 143 (456) T ss_pred -------------CCCCcchHHHHHHHHHhcCh--hhHHHHHHHHHhhcCeeEEEEeeCCCCceE-EEEEccceeEEEEc Confidence 0000 000 01111222221 223455678899999999999888888653 55666665543322 Q ss_pred Cc---------eeEEEcCCceE---------------------------EEEeccc------EEEecCCCC---CCCccc Q lcl|Aclame:pro 140 ED---------VYWWVPSFNEP---------------------------TAFAPGS------VFHLLEPDI---NQELYG 174 (344) Q Consensus 140 ~~---------~~~~~~~~~~~---------------------------~~~~~~e------Iih~~~~~~---~~~~~G 174 (344) +. .||...+++.. .....+. .-|.-..-| .....| T Consensus 144 ~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~g 223 (456) T protein:vir:10 144 PLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDG 223 (456) T ss_pred CCCCcceEEEEEEEEecCCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEEEecCCCC Confidence 11 01111111000 0000000 001000000 011247 Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCC----HHHHHHH--HHHHHHhhcccccccccccCCCCc Q lcl|Aclame:pro 175 LPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQD----RNDIEML--RENMVKSKGRNNFKNLFLYAPQGK 248 (344) Q Consensus 175 ~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~----~e~~~~l--~~~~~~~~g~~n~~~~~vl~~~~~ 248 (344) +|.++.....++....+..-........+.|--++. +...+ ++.-+.+ ...|+... +.++.+ T Consensus 224 ~gd~e~vi~liDa~~~~~s~~~~~~~~~a~~~~~i~--G~~~~~~~~d~~g~~~~~~~~~~~~~-----~~~~~~----- 291 (456) T protein:vir:10 224 MGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALK--STEHGLPNVDENGNAIDYASIFEAAP-----GALWEL----- 291 (456) T ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHhhhHhHhhh--ccCcccccccccccccchhhhhhhhc-----cccccC----- Confidence 777776655555444333322222222233322221 11111 1111111 11222221 223333 Q ss_pred cccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHH------ Q lcl|Aclame:pro 249 ADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE------ 322 (344) Q Consensus 249 ~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~------ 322 (344) +++.++..+.... -..|++..+....+|+++=++|++.+|....+. ++ +. ..+....+.=.+...+. T Consensus 292 ~~~~~~~q~~~~~-~~~~~~~l~~~i~~~~~~s~~p~~~~~~~~~N~-Sg---~A--i~~~~~~l~~k~~~~~~~f~~~l 364 (456) T protein:vir:10 292 PPGVDIWESQAND-FTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQ-SA---EG--AHNIEKGFLFKCEDRLSIAKIGL 364 (456) T ss_pred CCCcceEEecccC-hhHHHHHHHHHHHHHHhccCCChHHhcccccCh-HH---HH--HHHHHHHHHHHHHHHHHHHHHHH Confidence 2344555554322 234889999999999999999999998543222 11 11 11211111111111111 Q ss_pred --HHHhhC--ccceeccccccccCCC Q lcl|Aclame:pro 323 --INGWIG--QEVIRFKNYSLDTDNG 344 (344) Q Consensus 323 --ln~~L~--~~~irf~~y~l~~d~g 344 (344) +.+.+. .....+...++.|.+. T Consensus 365 ~~~~rl~~~~~g~~~~~~~~v~w~~~ 390 (456) T protein:vir:10 365 EAILVKALQIEGESVEDTVDVSFESP 390 (456) T ss_pred HHHHHHHHHhcCCCcccceeEEecCC Confidence 111100 0011122233344333 No 208 >protein:vir:105819 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655764;genbank:gi:109522087;genbank:GeneID:4157627 Probab=55.49 E-value=0.48 Score=22.34 Aligned_cols=308 Identities=10% Similarity=0.027 Sum_probs=101.3 Q ss_pred CCC------------CCCCC-CCcc-hhhccccccceeEEE--cCCceeccCcchhhhhhhhh---ccchhhhccccHHH Q lcl|Aclame:pro 1 MSK------------KKGKT-PQPA-AKTMTASAPKMEAFT--FGEPVPVLDRRDILDYVECI---SNGRWYEPPVSFTG 61 (344) Q Consensus 1 m~~------------~~~~~-~~~~-~~~~~~~~~~~~~f~--~~~p~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~ 61 (344) |+. +.... ++-. -..--.....+.-.. +-+....+.+.-+..+...+ ..+..+-.|+.+. T Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~~~~~~~- 79 (456) T protein:vir:10 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVG- 79 (456) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhcCcccChhhhhhhhhhhcchHHHHHHHHHhhhccCCeecC- Confidence 000 00000 0000 000000000000000 00000000000000000000 0111111222110 Q ss_pred HHHHHhhhhhhhhhhhh-cch-hhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeecccc Q lcl|Aclame:pro 62 LAKSLRAAVHHSSPIYV-KRN-ILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVE 139 (344) Q Consensus 62 l~~~~~~~~~~~~~i~~-k~n-~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~ 139 (344) +-.. +.. .+...+..|.+ ......++.+.+.+|.||..+..+..|.+. +..++|..+.+..+ T Consensus 80 -------------~~~d~~~~~~~~~i~~~N~~--d~~~~~~~~~a~i~G~ay~~v~~d~~g~~~-i~~~~p~~~~~i~d 143 (456) T protein:vir:10 80 -------------GSADSDLALRARRIWRDNRM--DSVCKQWVKYGLDFGESYLTCWRRDDGTAT-ITADSPETMVVSVD 143 (456) T ss_pred -------------CCCCcchHHHHHHHHHhcCh--hhHHHHHHHHHhhcCeeEEEEeeCCCCceE-EEEEccceeEEEEc Confidence 0000 000 01111222221 223455678899999999999888888653 55666665543322 Q ss_pred Cc---------eeEEEcCCceE---------------------------EEEeccc------EEEecCCCC---CCCccc Q lcl|Aclame:pro 140 ED---------VYWWVPSFNEP---------------------------TAFAPGS------VFHLLEPDI---NQELYG 174 (344) Q Consensus 140 ~~---------~~~~~~~~~~~---------------------------~~~~~~e------Iih~~~~~~---~~~~~G 174 (344) +. .||...+++.. .....+. .-|.-..-| .....| T Consensus 144 ~~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~g 223 (456) T protein:vir:10 144 PLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDG 223 (456) T ss_pred CCCCcceEEEEEEEEecCCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEEEecCCCC Confidence 11 01111111000 0000000 001000000 011247 Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCC----HHHHHHH--HHHHHHhhcccccccccccCCCCc Q lcl|Aclame:pro 175 LPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQD----RNDIEML--RENMVKSKGRNNFKNLFLYAPQGK 248 (344) Q Consensus 175 ~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~----~e~~~~l--~~~~~~~~g~~n~~~~~vl~~~~~ 248 (344) +|.++.....++....+..-........+.|--++. +...+ ++.-+.+ ...|+... +.++.+ T Consensus 224 ~gd~e~vi~liDa~~~~~s~~~~~~~~~a~~~~~i~--G~~~~~~~~d~~g~~~~~~~~~~~~~-----~~~~~~----- 291 (456) T protein:vir:10 224 MGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALK--STEHGLPNVDENGNAIDYASIFEAAP-----GALWEL----- 291 (456) T ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHhhhHhHhhh--ccCcccccccccccccchhhhhhhhc-----cccccC----- Confidence 777776655555444333322222222233322221 11111 1111111 11222221 223333 Q ss_pred cccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHH------ Q lcl|Aclame:pro 249 ADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIRE------ 322 (344) Q Consensus 249 ~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~------ 322 (344) +++.++..+.... -..|++..+....+|+++=++|++.+|....+. ++ +. ..+....+.=.+...+. T Consensus 292 ~~~~~~~q~~~~~-~~~~~~~l~~~i~~~~~~s~~p~~~~~~~~~N~-Sg---~A--i~~~~~~l~~k~~~~~~~f~~~l 364 (456) T protein:vir:10 292 PPGVDIWESQAND-FTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQ-SA---EG--AHNIEKGFLFKCEDRLSIAKIGL 364 (456) T ss_pred CCCcceEEecccC-hhHHHHHHHHHHHHHHhccCCChHHhcccccCh-HH---HH--HHHHHHHHHHHHHHHHHHHHHHH Confidence 2344555554322 234889999999999999999999998543222 11 11 11211111111111111 Q ss_pred --HHHhhC--ccceeccccccccCCC Q lcl|Aclame:pro 323 --INGWIG--QEVIRFKNYSLDTDNG 344 (344) Q Consensus 323 --ln~~L~--~~~irf~~y~l~~d~g 344 (344) +.+.+. .....+...++.|.+. T Consensus 365 ~~~~rl~~~~~g~~~~~~~~v~w~~~ 390 (456) T protein:vir:10 365 EAILVKALQIEGESVEDTVDVSFESP 390 (456) T ss_pred HHHHHHHHHhcCCCcccceeEEecCC Confidence 111100 0011122233344333 No 209 >protein:vir:78227 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491663;genbank:gi:157786487;genbank:GeneID:5625705 Probab=49.90 E-value=0.63 Score=21.70 Aligned_cols=288 Identities=10% Similarity=0.058 Sum_probs=105.5 Q ss_pred cCc-chhhhhhhh---------hccchhhhc-------cccH-HHHHHHHhhhhhhhhhhhhcchhhHHhhhcCCCCC-- Q lcl|Aclame:pro 35 LDR-RDILDYVEC---------ISNGRWYEP-------PVSF-TGLAKSLRAAVHHSSPIYVKRNILASTFIPHPWLS-- 94 (344) Q Consensus 35 ~~~-~~~~~~~~~---------~~~~~~~~~-------p~~~-~~l~~~~~~~~~~~~~i~~k~n~~~~~~~pnp~~~-- 94 (344) |++ .++..++.- ..-.+||.- +... ..+........++.-++...... ..++++.. T Consensus 1 ~~t~~~~i~~L~~~~~~~~~r~~~l~~Yy~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~----l~~~g~~~~~ 76 (480) T protein:vir:78 1 MTTYHEHVERLQGLLARDLPNLLEAEAYRNGTRRLKTIGIGAPPELAYLDVQPGWVATYLRTLSDR----LDIEGFRISE 76 (480) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHhhhhhhcchHHHHHHHHHhh----hccCceecCC Confidence 222 111111100 001122221 1111 11111111112222222221111 11222110 Q ss_pred -----------------HHHHHHHHHHHHhcCCceEEEeeC------CCCceEEEEEeCcceeeccccCc---------e Q lcl|Aclame:pro 95 -----------------QQDFSRFVLDFLVFGNAFLEKRYS------TTGKVIRLETSPAKYTRRGVEED---------V 142 (344) Q Consensus 95 -----------------~~~~~~~~~d~ll~Gnay~~~~r~------~~G~~~~L~pl~~~~~~~~~~~~---------~ 142 (344) ......+..+.+.+|.||..+.++ ..|.+ .+..++|..+.+..+.. . T Consensus 77 d~~~~~~l~~i~~~N~~d~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~g~~-~i~~~~p~~~~~~~D~~~~~~~~~~i~ 155 (480) T protein:vir:78 77 DSEGLEELWNWWQANDLDEESVLGHDDSLTFGRSYITVSHPDVESGDPAGIP-LIRVESPLYMYAELDPRNTRRVTRAVR 155 (480) T ss_pred CchhHHHHHHHHHhcCHHHHHHHHHHHHhhcCceEEEEecCccccCCCCCee-EEEEEcccceEEEEcCCCccceEEEEE Confidence 122334567889999999988763 34433 35566666554333211 0 Q ss_pred eEE------------EcCCceEEE---------------------EecccEEEecCCCCCCCcccccchhh-hHHHHHHH Q lcl|Aclame:pro 143 YWW------------VPSFNEPTA---------------------FAPGSVFHLLEPDINQELYGLPEYLS-ALNSAWLN 188 (344) Q Consensus 143 ~~~------------~~~~~~~~~---------------------~~~~eIih~~~~~~~~~~~G~sp~~~-~~~~i~~~ 188 (344) +|. +...+.... +..=.|+||++..-.++.+|.|.+.- ....++.. T Consensus 156 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~n~~~~~~~~G~s~i~~~v~~l~Da~ 235 (480) T protein:vir:78 156 LYTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPVVPLTNDPRLGNRYGRSEISPELRKVTDAA 235 (480) T ss_pred EEEeecCCCceEEEEEEeCCeEEEEEecCCCccccccccccccCCCCCcceEEeecccccCCccCcccchhhHHHHHHHH Confidence 110 000011111 11113456654322344678877653 22323322 Q ss_pred HHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeeeccCChhHHHHHH Q lcl|Aclame:pro 189 ESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFN 268 (344) Q Consensus 189 ~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e 268 (344) ..+..-......-.+.|--+| ++..+++...+.-...|.... +.++.+. ....++..+..... ..|++ T Consensus 236 ~~~~s~~~~~~~~~a~p~~~i--~G~~~~~~~~~~~~~~~~~~~-----~~~~~~~----~~~~~~~~~~~~~~-~~~~~ 303 (480) T protein:vir:78 236 SRTLMNLQSASQILGTPLRVI--SGVTTDELTNDGENTTLDIYY-----GRILTLA----SEAAKISEFKAAEL-RNFAE 303 (480) T ss_pred HHHHHHHHHHHHhhcchhhhh--hcCCccccccccccchhhhhh-----hhhccCC----CCCceEEecCccCH-HHHHH Confidence 222211122222233443333 343322222111111222211 1222222 12355656554332 23778 Q ss_pred HHHhhHHHHHHHhcCChHHhccccccccccccHHHHHHHHHHHHHHHHHHH--------HHH----HHHhhCccc-eecc Q lcl|Aclame:pro 269 IKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDR--------IRE----INGWIGQEV-IRFK 335 (344) Q Consensus 269 ~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~--------ie~----ln~~L~~~~-irf~ 335 (344) ..+....+|+..=++|+..+|....+.+++..+. +....|.=.+.+ |.+ +...++.+. ..+. T Consensus 304 ~l~~~i~~~~~~~~~p~~~~g~~~~n~~Sg~Alk-----~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~g~~~~~~~~ 378 (480) T protein:vir:78 304 EMEVFRKEAASITGLPPQYLSSSSENPASAEAII-----ATDSRIVKMAERKGRIFGGAWERAMRIAMQIMGREVTEEYT 378 (480) T ss_pred HHHHHHHHHhcccCCChHHhccccCcchHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccce Confidence 7888888899999999999986543322221111 111111111111 111 111123221 1122 Q ss_pred ccccccCCC Q lcl|Aclame:pro 336 NYSLDTDNG 344 (344) Q Consensus 336 ~y~l~~d~g 344 (344) ..++.|.+. T Consensus 379 ~i~v~f~~~ 387 (480) T protein:vir:78 379 RLETVWRDP 387 (480) T ss_pred eeeEEecCC Confidence 233444433 No 210 >protein:vir:80959 Length: 499 # NCBI annotation: gp3 # Family: family:all:898 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468389;genbank:gi:157324963;genbank:GeneID:5601394 Probab=49.38 E-value=0.64 Score=21.64 Aligned_cols=300 Identities=10% Similarity=0.087 Sum_probs=115.2 Q ss_pred CCCCC---CCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKKK---GKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIY 77 (344) Q Consensus 1 m~~~~---~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~ 77 (344) ..+.. ++..... ..... .+ ..+.+=| ..+.+-. .+=...-|+.+.. . . T Consensus 49 ~g~~~~~~~~~~~~~--~~~~~-~~--~~s~n~~------~~iv~~~----a~~l~~ep~~i~~---------~-----d 99 (499) T protein:vir:80 49 QGNYAEWHNLNYEHN--GNPVN-RR--QLSMNLP------KVTAKYM----SKLLFNEKVKINI---------D-----D 99 (499) T ss_pred cCCcchhhccccccC--CCccc-cc--eeecchH------HHHHHHH----HHhhhCCcceEee---------C-----C Confidence 11100 0000000 00000 00 0000000 0000000 0000111111100 0 0 Q ss_pred hcchhhHH-hhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeecc-cc---------------C Q lcl|Aclame:pro 78 VKRNILAS-TFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRG-VE---------------E 140 (344) Q Consensus 78 ~k~n~~~~-~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~-~~---------------~ 140 (344) ...+..+. .+..|. ....+...+.+.+..|.+|+.+..|..|++ .+..++|..+-+. .+ + T Consensus 100 ~~~~e~l~~~~~~n~--f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~-~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~ 176 (499) T protein:vir:80 100 ETAEEFVLNVLKTNG--FTKNMERYIEYGEAMGGFVIKVYHDGNKNV-KVSFATADCMYPLSNDSENVDECLIANSFHKN 176 (499) T ss_pred HHHHHHHHHHHhhcc--HHHHHHHHHHHHhhcCcEEEEEEECCCCcE-EEEEEcCCceEEEEecCCCeEEEEEEEEEeec Confidence 01111111 112221 134567778888899999999988877753 3455555433221 11 1 Q ss_pred ceeE----------------EEc-------CC---ceEEE-------Eec---------ccEEEecCCCCC----CCccc Q lcl|Aclame:pro 141 DVYW----------------WVP-------SF---NEPTA-------FAP---------GSVFHLLEPDIN----QELYG 174 (344) Q Consensus 141 ~~~~----------------~~~-------~~---~~~~~-------~~~---------~eIih~~~~~~~----~~~~G 174 (344) +.+| .+. .. |..+. +++ --+.|+|.+-++ +..+| T Consensus 177 ~~~y~~lE~h~~~~~~~~~y~I~n~~~~~~~~~~lG~~v~l~~~~~~~~~~~~~~~~~~p~f~~~~~~~~N~~~~~splG 256 (499) T protein:vir:80 177 NKYYKLLEWNEWKGEKEEVYTVTTELYQSDDPNELGGKVSLKLLFNDIEPVVPLPSLTRPTFIYIKPNIANNKNLTSPLG 256 (499) T ss_pred CeEEEEEEEEEecccceeeEEEEEEEEeccCccccCcccchhhhccCcCCceeecCCCccceEeecCCccccccCCCccC Confidence 1111 000 00 11110 000 013456554322 23468 Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHH---HHHHHHHHHHHhhcccccccccccCCCCcccc Q lcl|Aclame:pro 175 LPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRN---DIEMLRENMVKSKGRNNFKNLFLYAPQGKADG 251 (344) Q Consensus 175 ~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e---~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g 251 (344) +|.+..+...+.....+-.-..+-|+.|-. .. .++...+... +-+.. ..+. ......+.+... ..+.+ T Consensus 257 ~S~~~~~~~lid~lD~~~s~~~~e~~~~~~-~i--~v~~~~l~~~~~~~g~~~-~~~~---~~~~~~~~~~~~--~~~~~ 327 (499) T protein:vir:80 257 ISVYANALDTLKTLDLMFDSYYQEFKLGKK-KV--LVPSSFVKTAVNLDGSTT-QYFD---STDEAFFLYQGE--QDDNG 327 (499) T ss_pred CchHhhHHHHHHHHHHHHHHHHHHHHhccc-ce--ecchhhhhccCCCCCCcc-cCCC---cccceeeEeecc--CCCCc Confidence 999888877776554444444445566532 22 2221111000 00000 0000 000000011001 11122 Q ss_pred ceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHH-------------HHHHHHHHHHHHH Q lcl|Aclame:pro 252 IKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVA-------------KVFVRNELIPLQD 318 (344) Q Consensus 252 ~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~-------------~~f~~~~l~P~~~ 318 (344) -.++.++..-...++.+.-+...++|....|++|+.+|....+. .++.+.. +..++..|..++. T Consensus 328 ~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~fg~~~~g~---~TAtei~s~~~~l~~~~~~~~~~~~~~l~~l~~ 404 (499) T protein:vir:80 328 KAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGL---KTATEVVSEKSETYQTKNSHSQLIEQGIKEMIV 404 (499) T ss_pred CceeEecCcCChHHHHHHHHHHHHHHHHhcCCChhhcCCCcccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 23555665556677888888899999999999999998743322 2233321 1122223333333 Q ss_pred HHHHHHHhh---CccceeccccccccCCC Q lcl|Aclame:pro 319 RIREINGWI---GQEVIRFKNYSLDTDNG 344 (344) Q Consensus 319 ~ie~ln~~L---~~~~irf~~y~l~~d~g 344 (344) .|.++...+ ......-.+..++|+++ T Consensus 405 ~il~~~~~~~~~~~~~~~~~~v~v~f~d~ 433 (499) T protein:vir:80 405 SILEVGKLIKAYDGDTVELDTITVDFDDS 433 (499) T ss_pred HHHHHHHHhccccCCCCCccceEEEeCCC Confidence 332221111 11111223456678888 No 211 >protein:vir:78907 Length: 518 # NCBI annotation: gp3 # Family: family:all:4147 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468843;genbank:gi:157325445;genbank:GeneID:5601904 Probab=40.98 E-value=0.95 Score=20.71 Aligned_cols=293 Identities=6% Similarity=-0.052 Sum_probs=110.2 Q ss_pred CCCCC------------------CCCC----------CcchhhccccccceeEEEcCCceecc-Ccchhhhhhhhhccch Q lcl|Aclame:pro 1 MSKKK------------------GKTP----------QPAAKTMTASAPKMEAFTFGEPVPVL-DRRDILDYVECISNGR 51 (344) Q Consensus 1 m~~~~------------------~~~~----------~~~~~~~~~~~~~~~~f~~~~p~~~~-~~~~~~~~~~~~~~~~ 51 (344) +.|+. .+.+ .+-++..... .-.+-|++|..+. +..+-. .+ T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~---~A~ll~~e~~~i~v~~~~~~------d~-- 97 (518) T protein:vir:78 29 KYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVV---AAEYISGKPLSIDVTGVNGS------KD-- 97 (518) T ss_pred HHhhhcccchhhhhhhhhhhhhcccCCCCccccccccCChHHHHHHH---HHHhhcCCCceEEecCcccc------Cc-- Confidence 11110 0000 0000000000 0011222221110 000000 00 Q ss_pred hhhccccHHHHHHHHhhhhhhhhhhhhcchhhHH-hhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeC Q lcl|Aclame:pro 52 WYEPPVSFTGLAKSLRAAVHHSSPIYVKRNILAS-TFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSP 130 (344) Q Consensus 52 ~~~~p~~~~~l~~~~~~~~~~~~~i~~k~n~~~~-~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~ 130 (344) ...+..+. .+..|. ....++..+.+.+..|.+++.+..+. |+ +.+..++ T Consensus 98 --------------------------e~~~~~l~~il~~n~--f~~~~~~~~e~a~a~G~~~~k~~~d~-~~-~~i~~v~ 147 (518) T protein:vir:78 98 --------------------------ENLTKQLKEALRIDN--FDSKSVKIVELAGGSGVSAVKINILN-GR-PSISVHS 147 (518) T ss_pred --------------------------HHHHHHHHHHHHhcc--HHHHHHHHHHHhhccCceEEEEEEEC-Ce-eEEEEEc Confidence 00000000 111111 12345566677777777776554442 33 2344444 Q ss_pred cceeecc-----------------ccCceeEE-E-------------------------c-CCceEEE------------ Q lcl|Aclame:pro 131 AKYTRRG-----------------VEEDVYWW-V-------------------------P-SFNEPTA------------ 154 (344) Q Consensus 131 ~~~~~~~-----------------~~~~~~~~-~-------------------------~-~~~~~~~------------ 154 (344) +..+-+. .+...+|. + . ..+..+. T Consensus 148 ad~~~P~~~~g~~~~~~f~~~~~~~~k~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~l~~ 227 (518) T protein:vir:78 148 SSQFWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITS 227 (518) T ss_pred CCeeEEEeecCcEEEEEEEEEeecCCcceeEEEEEeeccccccceeecccceeEEEEEeeecCccccccccccccccccc Confidence 4332211 01111111 0 0 0000000 Q ss_pred -Eecc---------------cEEEecCCCCCC----CcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCC Q lcl|Aclame:pro 155 -FAPG---------------SVFHLLEPDINQ----ELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDA 214 (344) Q Consensus 155 -~~~~---------------eIih~~~~~~~~----~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~ 214 (344) ...+ -+.|++...++. ..+|+|.+..+...+......-.-..+-|+.|- +. +.+++. T Consensus 228 ~~~~~~~~e~~~~~tg~~~~~~~~~~n~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~-~~--i~v~~~ 304 (518) T protein:vir:78 228 YLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK-TK--IAASER 304 (518) T ss_pred ccccccCccceeeccCCccceEEeeccccccccccCCCcCcchHhhhhHHHHHHHHHHHHHHHHHHhCC-ce--eeechh Confidence 0000 124445443332 245999999998888765555555555567654 33 223322 Q ss_pred CCCHH-HHHHH--HHHHHHhhcccccccccccC---C-CCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHH Q lcl|Aclame:pro 215 VQDRN-DIEML--RENMVKSKGRNNFKNLFLYA---P-QGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQL 287 (344) Q Consensus 215 ~~~~e-~~~~l--~~~~~~~~g~~n~~~~~vl~---~-~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~l 287 (344) .+... .-... ...|. -..+.++.- . .+.+..-.++.++..-.+.++.+..+...++|....|++|.. T Consensus 305 ~l~~~~~~~~~~~~~~fd------~~~~~y~~i~~~~~~~~~~~~~i~~~~~~Ir~e~~~~~~~~~l~~~~~~~G~s~~t 378 (518) T protein:vir:78 305 MFRKKVNKSTDKEEWSMN------VDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPAT 378 (518) T ss_pred HhccCCCCCCCccccccC------CCCceEEEecCcCCCCCccccceeeeecccChHHHHHHHHHHHHHHHHhhCCChhh Confidence 21100 00000 00000 001111110 0 011111236666666678899999999999999999999999 Q ss_pred hccccccccccccHHHHH----------HHHHHHHHHHHHHHHHHHHHhhCcc----c-eeccccccccCCC Q lcl|Aclame:pro 288 MGGKPENVGSLGDIEKVA----------KVFVRNELIPLQDRIREINGWIGQE----V-IRFKNYSLDTDNG 344 (344) Q Consensus 288 lG~~~~~~~~~~n~e~~~----------~~f~~~~l~P~~~~ie~ln~~L~~~----~-irf~~y~l~~d~g 344 (344) +|... ...|..-+.... +..++..|.=++..+.++-...... . ..-....++|++| T Consensus 379 fg~~~-~~~TATei~s~~~~~~~t~~~~~~~~e~al~~l~~~i~~l~~~~~~~~~~~~~~~~~~v~i~f~D~ 449 (518) T protein:vir:78 379 FNLGN-REVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDP 449 (518) T ss_pred cCccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccCCCceeEEEEeCCC Confidence 98632 222211111111 1222233333333332322221111 0 0012356788888 No 212 >protein:vir:94709 Length: 522 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338118;genbank:gi:77118196;genbank:GeneID:3707732 Probab=38.62 E-value=1.1 Score=20.45 Aligned_cols=313 Identities=11% Similarity=0.041 Sum_probs=125.0 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCC-------ceeccCcchhhhhhhh---------hccchhhhccccHHHHHH Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGE-------PVPVLDRRDILDYVEC---------ISNGRWYEPPVSFTGLAK 64 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-------p~~~~~~~~~~~~~~~---------~~~~~~~~~p~~~~~l~~ 64 (344) |..+++.-.....+-..=..|+ .|.+.+ ..++-+.+ .+++.. +-++.|+..-++=..+.. T Consensus 19 l~~~R~~~e~~w~e~~~y~lP~--~~~~~~~~~~~~~~~~~dst~--~~a~~~Las~l~~~ltP~~~WFrl~~~d~~~~~ 94 (522) T protein:vir:94 19 LKNGRQPYETRAQNCAAVTIPS--LFPKESDNSSTEYTTPWQAVG--ARCLNNLAAKLMLALFPQSPWMRLTVSEYEAKT 94 (522) T ss_pred HHHHhhHHHHHHHHHHHHhccc--ccCCCCCcccccccccccccH--HHHHHHHHHHHHhhcCCCCcccccccchhhhhc Confidence 1000000000000000000000 000000 00000000 001100 011122221111000000 Q ss_pred H---HhhhhhhhhhhhhcchhhH--HhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCce--EEEEEeCcceeecc Q lcl|Aclame:pro 65 S---LRAAVHHSSPIYVKRNILA--STFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKV--IRLETSPAKYTRRG 137 (344) Q Consensus 65 ~---~~~~~~~~~~i~~k~n~~~--~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~--~~L~pl~~~~~~~~ 137 (344) + .........-+. +....+ .....| .+..+-.+..|+..+|||.+++..+..|.+ ...+|+....+... T Consensus 95 ~~~~~~~~~~v~~~L~-~ve~~~~~~~~~sn---f~~~~~~~~~~L~~~G~a~l~~~~~~~~~~~~~~~~pl~~y~v~~d 170 (522) T protein:vir:94 95 LSQDSEAAARVDEGLA-MVERVLMAYMETNS---FRVPLFEALKQLIVSGNCLLYIPEPEQGTYSPMRMYRLVSYVVQRD 170 (522) T ss_pred cCcccchhHHHHHHHH-HHHHHHHHHHHhcC---cHHHHHHHHHHHHhhCcEeEeeeccCCCceeeEEEEEcceEEEeeC Confidence 0 000000000000 000011 111122 345566778899999999999877766654 45667655444433 Q ss_pred ccCce---e-------------------------------EE--EcCC----------ceEE-------EEecccEEEec Q lcl|Aclame:pro 138 VEEDV---Y-------------------------------WW--VPSF----------NEPT-------AFAPGSVFHLL 164 (344) Q Consensus 138 ~~~~~---~-------------------------------~~--~~~~----------~~~~-------~~~~~eIih~~ 164 (344) ..++. | |. .+.. |..+ .|..-..+..| T Consensus 171 ~~G~vd~i~r~~~~~~~~l~~~~~~~~~~~~~~p~~~v~v~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~e~P~~~~R 250 (522) T protein:vir:94 171 AFGNILQIVTIDKVAFSALPEDVKSQLNADDYEPDTELEVYTHIYRQDDEYLRYEEVEGIEVTGTDGSYPLTACPYIPVR 250 (522) T ss_pred CCcCeEEEeeeeeccHHhcchHHHHHHhcccCCccceEEEEEEEEeeCCceeEEeeccCceecccCCCCccccCCceeee Confidence 22211 0 00 0000 0000 01111223333 Q ss_pred CCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccC Q lcl|Aclame:pro 165 EPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYA 244 (344) Q Consensus 165 ~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~ 244 (344) -.-..+..||.||..-++..+...+...+-....-.-...|.+++. +++....++. ..|+.+ .++. T Consensus 251 w~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~~v~-~~g~~~~~~~---------~~~~~g---~~v~- 316 (522) T protein:vir:94 251 MVRLDGEDYGRSYCEEYLGDLNSLETITEAITKMAKVASKVVGLVN-PNGITQPRRL---------NKAATG---EFVA- 316 (522) T ss_pred eeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeec-ccccccchhe---------eccCCc---eeec- Confidence 2223457899999999999999888888888888888888886653 4444333221 111111 2222 Q ss_pred CCCccccceeeeccCChhHHH-HHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHH--HHHHHHHHHHHHHHH Q lcl|Aclame:pro 245 PQGKADGIKIIPLSEVATKDD-FFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAK--VFVRNELIPLQDRIR 321 (344) Q Consensus 245 ~~~~~~g~~~~pl~~~~~d~q-f~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~--~f~~~~l~P~~~~ie 321 (344) +..+.++..|+...+ +.+ -.+.-+..+..|-.+|-+. .++..... .-++++... .=....|.|...++. T Consensus 317 --g~~~~v~~~~~~~~~-~~~~~~~~i~~~~~rI~~af~~~--~~~~~~~~---r~TAtEV~~r~~E~~~~LG~v~~rl~ 388 (522) T protein:vir:94 317 --GRVEDINFLQLTKGQ-DFTIAKSVADAIEQRLGWAFLLN--SAVQRNAE---RVTAEEIRYVAGELEATLGGVYSVQS 388 (522) T ss_pred --CCcccceeeeccccc-chhHHHHHHHHHHHHHHHHHhhh--hhccCCCc---cccHHHHHHHHHHHHHHHhHHHHHHH Confidence 223456677765433 333 2345556667788999664 23222222 224444332 223445666666654 Q ss_pred H-HHHhh-------------CccceeccccccccCCC Q lcl|Aclame:pro 322 E-INGWI-------------GQEVIRFKNYSLDTDNG 344 (344) Q Consensus 322 ~-ln~~L-------------~~~~irf~~y~l~~d~g 344 (344) + +-.-| .++. --+.++.++..| T Consensus 389 ~E~l~Pli~r~~~il~r~g~lP~~-p~~~v~v~~~s~ 424 (522) T protein:vir:94 389 QELQLPIVRVLMNQLQSAGMIPDL-PKEAVEPTVSTG 424 (522) T ss_pred HHHHHHHHHHHHHHHHhcCCCCCC-CcccEEeeEecH Confidence 2 22111 0111 002234455555 No 213 >protein:vir:98265 Length: 524 # NCBI annotation: gp20 portal vertex of the head # Family: family:all:1036 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239198;genbank:gi:66391673;genbank:GeneID:3416367 Probab=28.37 E-value=1.8 Score=19.25 Aligned_cols=326 Identities=12% Similarity=0.093 Sum_probs=138.5 Q ss_pred CCCCCCCCCCc-chhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhh------hccc-cHHHHHHHHhhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQP-AAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWY------EPPV-SFTGLAKSLRAAVHH 72 (344) Q Consensus 1 m~~~~~~~~~~-~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~------~~p~-~~~~l~~~~~~~~~~ 72 (344) ++..++..... ..++.+.++| ...|.......+.. ....+|-++ +.++ +...|.+.+|.-..| T Consensus 17 ~~~d~~~~~~~~~~~~~s~~~p-----~~~dGa~~i~~~~~----~~~~~g~~~~~y~~~e~~~~~~~eLI~~YR~ma~~ 87 (524) T protein:vir:98 17 AREDEIELEQQLKNDTGSVAPP-----KNNDGAYEIETDLN----NQKYAGVFQQFYSGQDPAIQNKEQLINTYRGIMSY 87 (524) T ss_pred hhhhhhhHhhhhcCCcccccCC-----CCCCCceeecCCCC----cceecceeeeeccccccccchHHHHHHHHHHHhhc Confidence 11111110000 0000001111 01111111110000 000111110 1111 244566666654443 Q ss_pred ---hhhhhhcchhhHHh----------h-------------------hcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCC Q lcl|Aclame:pro 73 ---SSPIYVKRNILAST----------F-------------------IPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTT 120 (344) Q Consensus 73 ---~~~i~~k~n~~~~~----------~-------------------~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~ 120 (344) .+++..-.|...-. + .-|-+.....-..++..|.+.|..|..++-+.. T Consensus 88 pEvd~Av~eIVneaIv~~~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhkiid~~ 167 (524) T protein:vir:98 88 PEVENAVSEIIDDAIVNEQGKDIITMDLAKTNFSKAIQDKIVEEFDNVLNIYDFDNMGARLFRDWYVDSRIYFHKIMHKD 167 (524) T ss_pred cchhhHHHhhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceeEEEEEEcCC Confidence 22232222221100 0 001011111112345578899999999986543 Q ss_pred Cc--eEEEEEeCcceeeccc-------cCc--------eeEEEcC-------------CceEEEEecccEEEec--CCCC Q lcl|Aclame:pro 121 GK--VIRLETSPAKYTRRGV-------EED--------VYWWVPS-------------FNEPTAFAPGSVFHLL--EPDI 168 (344) Q Consensus 121 G~--~~~L~pl~~~~~~~~~-------~~~--------~~~~~~~-------------~~~~~~~~~~eIih~~--~~~~ 168 (344) .. +.+|..|+|..++... +.+ .||.+.. -+..+.++.+.|+|.. ..+. T Consensus 168 ~~kGI~ELr~lDPr~i~~vr~~~~~~~~~~~~v~~~~~e~f~Y~~~~~~~~~~g~~~~~~~~ikI~~dAIvy~hSGL~d~ 247 (524) T protein:vir:98 168 ESKGIRELRQLDPRCMELIRESITETLDGGVKVFRGYREFFVYSAPKAGYTYNGQIYQANQKIKIPRSAIVYAHSGLEDC 247 (524) T ss_pred CCcceeeeeeeCCccceeeeeccccccccchhhccceeeeeeeccCCCccccccceecCCCceeechhheeeeccCcccC Confidence 32 8999999998875431 111 1333321 1234668888898875 2333 Q ss_pred CCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCC-CHHHHHHHHHHHHHhh---------c-cccc Q lcl|Aclame:pro 169 NQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQ-DRNDIEMLRENMVKSK---------G-RNNF 237 (344) Q Consensus 169 ~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~-~~e~~~~l~~~~~~~~---------g-~~n~ 237 (344) +.++ +|-|..|...+..-.-.++..-=|=-.-|.=.-|+++.=+.+ ...+.+=+++-+.+++ | ..|. T Consensus 248 ~~~i--isyLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGevrdd 325 (524) T protein:vir:98 248 SNNI--IGYLHRAVKPANQLRLLEDAMVIYRITRAPERRVFYIDVGQMGGNKATQYVNNIAQGLKNRVVYDARTGTVKNQ 325 (524) T ss_pred CCCe--eeehhHhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEeeccCceeecc Confidence 3333 466666666555544444433333233344455666643334 3444555666665554 2 2233 Q ss_pred cccc-ccC-------CCCccccceeeeccC--ChhHHHHHHHHHhhHHHHHHHhcCChHHhcccccccccc---ccHHHH Q lcl|Aclame:pro 238 KNLF-LYA-------PQGKADGIKIIPLSE--VATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSL---GDIEKV 304 (344) Q Consensus 238 ~~~~-vl~-------~~~~~~g~~~~pl~~--~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~---~n~e~~ 304 (344) ++.+ .++ .|| .|.+++.|.- +--+++=+ .+-+..+-++.+||.+.++.. +++-+. +.+... T Consensus 326 rk~msMlEDyWLpRReGg--rgTEItTLpggqnlgem~DV---~YF~kkLy~aLnVP~sRl~~~-~~~f~~Gr~~EItRD 399 (524) T protein:vir:98 326 QNNLSMTEDYWLMRRDGK--AITEVSTLPGGQNFSDMDDI---KWFNRKLYEALRVPLSRMPRD-DGGMQIGGGGEITRD 399 (524) T ss_pred ccccchhhhhcccccCCC--CccceeeccccCCcChHHHH---HHHHHHHHHHhCCCceeccCC-CCccccccccchhHH Confidence 3322 221 233 2445554433 33333333 345677999999999999642 222222 234334 Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhhCc-----ccee---c------cccccccCCC Q lcl|Aclame:pro 305 AKVFVRNELIPLQDRIREIN-GWIGQ-----EVIR---F------KNYSLDTDNG 344 (344) Q Consensus 305 ~~~f~~~~l~P~~~~ie~ln-~~L~~-----~~ir---f------~~y~l~~d~g 344 (344) ..-|.+ -|.-+..++.+++ +.|-. .++. | --|++.-|+= T Consensus 400 EiKF~K-FI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~ 453 (524) T protein:vir:98 400 ELKFSK-FIRTLQIQFSPVLSDPLKTNLIAKKIITEDEWEENVSKISFVFQQDSY 453 (524) T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEEeecch Confidence 444544 3666777777643 33321 1221 1 1133333333 No 214 >protein:vir:101806 Length: 516 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238883;genbank:gi:66391958;genbank:GeneID:3416633 Probab=28.09 E-value=1.8 Score=19.21 Aligned_cols=330 Identities=13% Similarity=0.078 Sum_probs=139.1 Q ss_pred CCCCCCCCCCcc---------hhhccccccc----eeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHh Q lcl|Aclame:pro 1 MSKKKGKTPQPA---------AKTMTASAPK----MEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLR 67 (344) Q Consensus 1 m~~~~~~~~~~~---------~~~~~~~~~~----~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~ 67 (344) |++-.+.-.... .+..+.++|. .....-..-.+.. ++-+..++ .++. ..-+...|.+.+| T Consensus 3 ~~~lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~-~g~~~~~~---~~~~---~~~~~~eLI~~YR 75 (516) T protein:vir:10 3 FLDLFKFWDRVDQNEYDERLKLGHESIATPKKDDGATEIETREGEATY-NAVMQQFF---GIDN---NISGTKDLINTYR 75 (516) T ss_pred chHhcccccchhhhHHhhhhcCCcCcccCCCCCCCceeeecCCCcccc-cceeeeee---cccc---ccchHHHHHHHHH Confidence 333222200000 0111111110 0001100000000 11111111 1110 0113345666666 Q ss_pred hhhhh---hhhhhhcchhhHH----------hhhcCCCCC------HHHH-------------HHHHHHHHhcCCceEEE Q lcl|Aclame:pro 68 AAVHH---SSPIYVKRNILAS----------TFIPHPWLS------QQDF-------------SRFVLDFLVFGNAFLEK 115 (344) Q Consensus 68 ~~~~~---~~~i~~k~n~~~~----------~~~pnp~~~------~~~~-------------~~~~~d~ll~Gnay~~~ 115 (344) .-..| .+++..-.|...- .+..-+... .+.| ..++..|.+.|..|..+ T Consensus 76 ~ma~~pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~ik~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhK 155 (516) T protein:vir:10 76 QLINNPEVERAVANIVNEAIVYERGHKVVSLDLDDTDFGSNVKEKILEEFDEVCRLLDASRKLDTLFRRWYVDSRIFFHK 155 (516) T ss_pred HHhhccchhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEE Confidence 54443 2223222222110 000111110 0111 23345778899999986 Q ss_pred eeC-CCCceEEEEEeCcceeeccccC---c-----------eeEEEcCC-------------ceEEEEecccEEEec--C Q lcl|Aclame:pro 116 RYS-TTGKVIRLETSPAKYTRRGVEE---D-----------VYWWVPSF-------------NEPTAFAPGSVFHLL--E 165 (344) Q Consensus 116 ~r~-~~G~~~~L~pl~~~~~~~~~~~---~-----------~~~~~~~~-------------~~~~~~~~~eIih~~--~ 165 (344) +-+ ....+.+|..|+|..++....- + .||.+..+ +..+.++.+-|.|.. . T Consensus 156 iid~~k~GI~Elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI~~dAI~y~hSGL 235 (516) T protein:vir:10 156 IMPNPKKGIAELRRLDPRFMEYYREIVTSDIGGTTIVKGYREFFIYTTGNEGYSYNGRIFEPNTRIKIPRSAVVYASSGL 235 (516) T ss_pred EecCccccceeeeeeCCcceeeEeeecccccccchhhhhhhheeeeccCccccccccceeCCCcceeechhheeeecccc Confidence 554 3445899999999877642210 1 13322211 234566777776655 4 Q ss_pred CCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCC-CHHHHHHHHHHHHHhh---------c-c Q lcl|Aclame:pro 166 PDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQ-DRNDIEMLRENMVKSK---------G-R 234 (344) Q Consensus 166 ~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~-~~e~~~~l~~~~~~~~---------g-~ 234 (344) .+.+.+.+ +|-|..|...+..-.-.++..-=|=-.-|.=.-|+++.=+.+ ...+.+=+++-+.+++ | . T Consensus 236 ~d~~~~~i-~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev 314 (516) T protein:vir:10 236 MDCSDRGI-IGYLHNAVKPANQLKLLEDAMVIYRITRAPERRVFYIDVGNMNNRKATEYVNGIMQSLKNRVVYDSNTGTV 314 (516) T ss_pred eeCCCCce-eeeehhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCee Confidence 45555555 777777776665554444443333233344445666543333 3344444555554442 2 1 Q ss_pred cccccccc-cC-------CCCccccceeeeccC--ChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHH Q lcl|Aclame:pro 235 NNFKNLFL-YA-------PQGKADGIKIIPLSE--VATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKV 304 (344) Q Consensus 235 ~n~~~~~v-l~-------~~~~~~g~~~~pl~~--~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~ 304 (344) .|.++.+- ++ .|| .|.+++.|.- +--+++=+ .+-+..+-++.+||.+.++.-.+.+..++...+. T Consensus 315 ~ddrk~msMlEDyWLpRReGg--rgTEItTLpGgqnlgem~DV---~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EI 389 (516) T protein:vir:10 315 KNQKRNLSMTEDYWLMRRDGK--SVTEVSSLPGAQTMGDMDDV---RWFNKKLYEALRIPLSRIPRDDGGMVIGGQDTAI 389 (516) T ss_pred ccchhhhhhHhhhcccccCCC--CccceeeccccCCcChHHHH---HHHHHHHHHHhCCCcccccCCCCceeeccccchh Confidence 22222221 11 222 2444444433 33333333 3456779999999999997532222222333333 Q ss_pred ---HHHHHHHHHHHHHHHHHHHH-HhhCcc-----cee---cc------ccccccCCC Q lcl|Aclame:pro 305 ---AKVFVRNELIPLQDRIREIN-GWIGQE-----VIR---FK------NYSLDTDNG 344 (344) Q Consensus 305 ---~~~f~~~~l~P~~~~ie~ln-~~L~~~-----~ir---f~------~y~l~~d~g 344 (344) ..-|.+ -|.-+..++.+++ +.|-.+ ++. |+ -|++.-|+= T Consensus 390 tRDEiKF~K-FI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~ 446 (516) T protein:vir:10 390 TRDELDFRK-FVVQLQHDFEEIFLDPLKTNLIYKRIITEDEWDEQINNIKVNFHQDSY 446 (516) T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecch Confidence 334444 4666777777643 333221 111 21 133333333 No 215 >protein:vir:101189 Length: 516 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932511;genbank:gi:37651637;genbank:GeneID:2610682 Probab=28.09 E-value=1.8 Score=19.21 Aligned_cols=330 Identities=13% Similarity=0.078 Sum_probs=139.1 Q ss_pred CCCCCCCCCCcc---------hhhccccccc----eeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHh Q lcl|Aclame:pro 1 MSKKKGKTPQPA---------AKTMTASAPK----MEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLR 67 (344) Q Consensus 1 m~~~~~~~~~~~---------~~~~~~~~~~----~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~ 67 (344) |++-.+.-.... .+..+.++|. .....-..-.+.. ++-+..++ .++. ..-+...|.+.+| T Consensus 3 ~~~lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~-~g~~~~~~---~~~~---~~~~~~eLI~~YR 75 (516) T protein:vir:10 3 FLDLFKFWDRVDQNEYDERLKLGHESIATPKKDDGATEIETREGEATY-NAVMQQFF---GIDN---NISGTKDLINTYR 75 (516) T ss_pred chHhcccccchhhhHHhhhhcCCcCcccCCCCCCCceeeecCCCcccc-cceeeeee---cccc---ccchHHHHHHHHH Confidence 333222200000 0111111110 0001100000000 11111111 1110 0113345666666 Q ss_pred hhhhh---hhhhhhcchhhHH----------hhhcCCCCC------HHHH-------------HHHHHHHHhcCCceEEE Q lcl|Aclame:pro 68 AAVHH---SSPIYVKRNILAS----------TFIPHPWLS------QQDF-------------SRFVLDFLVFGNAFLEK 115 (344) Q Consensus 68 ~~~~~---~~~i~~k~n~~~~----------~~~pnp~~~------~~~~-------------~~~~~d~ll~Gnay~~~ 115 (344) .-..| .+++..-.|...- .+..-+... .+.| ..++..|.+.|..|..+ T Consensus 76 ~ma~~pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~ik~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhK 155 (516) T protein:vir:10 76 QLINNPEVERAVANIVNEAIVYERGHKVVSLDLDDTDFGSNVKEKILEEFDEVCRLLDASRKLDTLFRRWYVDSRIFFHK 155 (516) T ss_pred HHhhccchhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEE Confidence 54443 2223222222110 000111110 0111 23345778899999986 Q ss_pred eeC-CCCceEEEEEeCcceeeccccC---c-----------eeEEEcCC-------------ceEEEEecccEEEec--C Q lcl|Aclame:pro 116 RYS-TTGKVIRLETSPAKYTRRGVEE---D-----------VYWWVPSF-------------NEPTAFAPGSVFHLL--E 165 (344) Q Consensus 116 ~r~-~~G~~~~L~pl~~~~~~~~~~~---~-----------~~~~~~~~-------------~~~~~~~~~eIih~~--~ 165 (344) +-+ ....+.+|..|+|..++....- + .||.+..+ +..+.++.+-|.|.. . T Consensus 156 iid~~k~GI~Elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI~~dAI~y~hSGL 235 (516) T protein:vir:10 156 IMPNPKKGIAELRRLDPRFMEYYREIVTSDIGGTTIVKGYREFFIYTTGNEGYSYNGRIFEPNTRIKIPRSAVVYASSGL 235 (516) T ss_pred EecCccccceeeeeeCCcceeeEeeecccccccchhhhhhhheeeeccCccccccccceeCCCcceeechhheeeecccc Confidence 554 3445899999999877642210 1 13322211 234566777776655 4 Q ss_pred CCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCC-CHHHHHHHHHHHHHhh---------c-c Q lcl|Aclame:pro 166 PDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQ-DRNDIEMLRENMVKSK---------G-R 234 (344) Q Consensus 166 ~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~-~~e~~~~l~~~~~~~~---------g-~ 234 (344) .+.+.+.+ +|-|..|...+..-.-.++..-=|=-.-|.=.-|+++.=+.+ ...+.+=+++-+.+++ | . T Consensus 236 ~d~~~~~i-~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev 314 (516) T protein:vir:10 236 MDCSDRGI-IGYLHNAVKPANQLKLLEDAMVIYRITRAPERRVFYIDVGNMNNRKATEYVNGIMQSLKNRVVYDSNTGTV 314 (516) T ss_pred eeCCCCce-eeeehhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCee Confidence 45555555 777777776665554444443333233344445666543333 3344444555554442 2 1 Q ss_pred cccccccc-cC-------CCCccccceeeeccC--ChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHH Q lcl|Aclame:pro 235 NNFKNLFL-YA-------PQGKADGIKIIPLSE--VATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKV 304 (344) Q Consensus 235 ~n~~~~~v-l~-------~~~~~~g~~~~pl~~--~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~ 304 (344) .|.++.+- ++ .|| .|.+++.|.- +--+++=+ .+-+..+-++.+||.+.++.-.+.+..++...+. T Consensus 315 ~ddrk~msMlEDyWLpRReGg--rgTEItTLpGgqnlgem~DV---~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EI 389 (516) T protein:vir:10 315 KNQKRNLSMTEDYWLMRRDGK--SVTEVSSLPGAQTMGDMDDV---RWFNKKLYEALRIPLSRIPRDDGGMVIGGQDTAI 389 (516) T ss_pred ccchhhhhhHhhhcccccCCC--CccceeeccccCCcChHHHH---HHHHHHHHHHhCCCcccccCCCCceeeccccchh Confidence 22222221 11 222 2444444433 33333333 3456779999999999997532222222333333 Q ss_pred ---HHHHHHHHHHHHHHHHHHHH-HhhCcc-----cee---cc------ccccccCCC Q lcl|Aclame:pro 305 ---AKVFVRNELIPLQDRIREIN-GWIGQE-----VIR---FK------NYSLDTDNG 344 (344) Q Consensus 305 ---~~~f~~~~l~P~~~~ie~ln-~~L~~~-----~ir---f~------~y~l~~d~g 344 (344) ..-|.+ -|.-+..++.+++ +.|-.+ ++. |+ -|++.-|+= T Consensus 390 tRDEiKF~K-FI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~ 446 (516) T protein:vir:10 390 TRDELDFRK-FVVQLQHDFEEIFLDPLKTNLIYKRIITEDEWDEQINNIKVNFHQDSY 446 (516) T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecch Confidence 334444 4666777777643 333221 111 21 133333333 No 216 >protein:vir:101418 Length: 569 # NCBI annotation: Prt # Family: family:all:9458 # MgeID: mge:1512 # MgeName: P1 # Cross-refs: genbank:acc:YP_006480;genbank:gi:46401636;genbank:GeneID:2777482 Probab=25.93 E-value=2 Score=18.93 Aligned_cols=335 Identities=13% Similarity=0.081 Sum_probs=124.6 Q ss_pred CCCCCCCCCCcchhhcc-ccccceeEEEcCCceeccC-----------cchhhhhhhhhccchhhhccccHHHH-HHH-- Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMT-ASAPKMEAFTFGEPVPVLD-----------RRDILDYVECISNGRWYEPPVSFTGL-AKS-- 65 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~-~~~~~~~~f~~~~p~~~~~-----------~~~~~~~~~~~~~~~~~~~p~~~~~l-~~~-- 65 (344) -.|....+-.---.+.. ...+....-.-|.|...+. .+|. ++...-.-++..++|-+..++ .+. T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~p~~~~~~~~~~~~~~t~~~D~-~~~g~~~~~~~~~~pr~R~qiY~~~ee 96 (569) T protein:vir:10 18 VFKDNGERDNILLSALAVHGGSGYLFSRAGAPVQLSGFLGGKPGDSGMAGDG-LVDGSRFIFDEVQLPEDRLQRYPLLEE 96 (569) T ss_pred hhhcCCccchhhhhhheeecCcceEEeecCcchhhhhhhccCccccchhhhh-HHHHHHHHhhhccCchhHHHHHHHHHH Confidence 21111111000000110 0111111111222322110 0000 111211223344555544332 111 Q ss_pred HhhhhhhhhhhhhcchhhHH---------hhh--cCCCCC----H----------------HHHHHHHHHHHhcCCceEE Q lcl|Aclame:pro 66 LRAAVHHSSPIYVKRNILAS---------TFI--PHPWLS----Q----------------QDFSRFVLDFLVFGNAFLE 114 (344) Q Consensus 66 ~~~~~~~~~~i~~k~n~~~~---------~~~--pnp~~~----~----------------~~~~~~~~d~ll~Gnay~~ 114 (344) ....+..+.++.......+. ... +|.-.+ . ...-.++++...||.+|+. T Consensus 97 M~~~p~Ia~AlniHVtaALggde~TGd~vfI~p~~~~~~a~~daakai~~el~~dl~~~iNr~~~~lA~~~~aFGdsYaR 176 (569) T protein:vir:10 97 MAVYSTIATALNIHITHALSFDKKTGQTFSIVPVHNGNDSDYDAAQALCGELMNDIGRTINKEVAGWAFIMSVFGVAYVR 176 (569) T ss_pred HhcCchhhhhhhhhhheeecccccccceEEEEeecCCCCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhee Confidence 11122222222111110000 000 111000 0 0112345677899999999 Q ss_pred EeeCCCCceEEEEE---eCcceeeccccCce---e---EEEcCCceEEEEecccEEEecCCC------------------ Q lcl|Aclame:pro 115 KRYSTTGKVIRLET---SPAKYTRRGVEEDV---Y---WWVPSFNEPTAFAPGSVFHLLEPD------------------ 167 (344) Q Consensus 115 ~~r~~~G~~~~L~p---l~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~eIih~~~~~------------------ 167 (344) +-.+..--++.|+. ..|.-+.....++. | |.....++.....+..++.+|.|- T Consensus 177 iY~~~~~GV~dl~~s~yt~PsfIqpFE~g~~tvGF~~~~~~~~~~ti~~l~p~qm~rmKmPrm~~i~q~~~v~~g~~~~~ 256 (569) T protein:vir:10 177 PYAKEGIGITSFECSYYTLPSFIKEFEVSGNLAGFSGDYLKDASGKMVFADPWAIIPMKIPYWRPKSNLMPVHTGHKAYS 256 (569) T ss_pred eeccCCceeEEEEecccccccccchhhhcCceEEeecccCCccccceeeechhhhhhhcccceeeccccchhhhhhhhee Confidence 87655444666553 23333333222221 1 100001111111122221111110 Q ss_pred ----------CCCCcccccchhhhHHH------HHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHH--------- Q lcl|Aclame:pro 168 ----------INQELYGLPEYLSALNS------AWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIE--------- 222 (344) Q Consensus 168 ----------~~~~~~G~sp~~~~~~~------i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~--------- 222 (344) ..-..||-|=+..+-.. ......+++++.+. -.-+|.++-..+++++.+ T Consensus 257 L~~d~~~~~Pi~psn~GgSFL~~ae~pf~~l~~Al~sL~~qri~dSv------~~~~Itlnm~gM~p~qr~~y~r~lt~~ 330 (569) T protein:vir:10 257 LLDNPEERTPIETQNYGTSLLEYAYEPYMNLRSAIRSLKATRFNASK------IDRIIGLAMNSLDPVKAADYSRTITQT 330 (569) T ss_pred ecccccccccccchhhhhHHHHHHHhHHHHHHHHHHhccchhhHHHH------HhHHhhccccCCCHHHHhHHHHHHHHH Confidence 00124677666665432 22233334443332 122344444456776643 Q ss_pred --HHHHHHHHh-hcccccccc-cccCCCCccc--cceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhcccccccc Q lcl|Aclame:pro 223 --MLRENMVKS-KGRNNFKNL-FLYAPQGKAD--GIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVG 296 (344) Q Consensus 223 --~l~~~~~~~-~g~~n~~~~-~vl~~~~~~~--g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~ 296 (344) +-++.+++. .|+.+.-.. .-+.|-..++ ++++ .+...+++.-=+|---+....+|.+.|+.++|||...-=++ T Consensus 331 LKr~~d~ie~a~~gg~~~~~~~~H~LPv~gekq~~~tv-Dt~~~~A~~~gIEdvM~~~R~LagaLGlD~SMlGwAD~LsG 409 (569) T protein:vir:10 331 LKRAADLMERRARGANNMPTVTNTLLPIMGDGKGQMTI-DTQTIQADINGIEDILTYMRQLAAALGLDYTLLGWADQMSG 409 (569) T ss_pred HHHHHHHHHHHhccCccccccceeeeeeecCccccccc-cccccccCcccHHHHHHHHHHHHhhhccchhHhhHHHHhcc Confidence 334555443 344443222 2222322222 2222 22333333333344557778899999999999987542222 Q ss_pred ------ccccHHH-HHH-HHHHHHHHHHHHHHHH--HHHhhCcccee--ccccccccCCC Q lcl|Aclame:pro 297 ------SLGDIEK-VAK-VFVRNELIPLQDRIRE--INGWIGQEVIR--FKNYSLDTDNG 344 (344) Q Consensus 297 ------~~~n~e~-~~~-~f~~~~l~P~~~~ie~--ln~~L~~~~ir--f~~y~l~~d~g 344 (344) .+-+..| +.+ ...+..+.-++.++-. ++-+-|+ ++. -.||+++|..- T Consensus 410 GLGeGG~frtSaQaa~RS~~iRqa~~e~in~iidiH~~fKYge-vf~~~drP~~V~F~s~ 468 (569) T protein:vir:10 410 GLGEGGFLRTAIQAAMRASWIQQGVEEFIQRAIDIHLAFKYGK-VYPEGDRPYKIEFHSV 468 (569) T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCc-ccCCCCcceEEEeccc Confidence 2222222 222 4455555555544432 2222222 211 24788888776 No 217 >protein:vir:94546 Length: 506 # NCBI annotation: minor head protein # Family: family:all:125 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223886;genbank:gi:62327098;genbank:GeneID:5075562 Probab=21.39 E-value=2.6 Score=18.30 Aligned_cols=292 Identities=14% Similarity=0.100 Sum_probs=102.6 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhhhhhccchhhhccccHHHHHHHHhhhhhhhhhhhhcc Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~i~~k~ 80 (344) +.+...+ .... .+-.++ +..| |. .+.+- ..+-.+..|+.+. +-.... T Consensus 57 ~~~~~~~-~~~~-----~~~~ki-~~n~--~~------~Iv~~----~~~~l~G~p~~~~--------------~~d~~~ 103 (506) T protein:vir:94 57 LDKQSRR-HEDG-----KADHRA-THSF--AK------YIADF----QTSYSVGNPINVK--------------LPDDGS 103 (506) T ss_pred ccccccc-cccc-----CCccee-ecch--HH------HHHHH----hhhhhcccCceee--------------cCcchH Confidence 1111110 0000 000000 0000 00 00000 0011111222211 000111 Q ss_pred hhhHH-hhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeeccccCc---------eeEEEcC-- Q lcl|Aclame:pro 81 NILAS-TFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWWVPS-- 148 (344) Q Consensus 81 n~~~~-~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~~~~~~-- 148 (344) +..+. .+..|.+ ......+..+.+.+|.||..+..+..|++ .+..++|..+-+..+.. ++|.... T Consensus 104 ~~~l~~~~~~N~~--~~~~~~~~~~~~~~G~a~~~v~~ded~~~-~i~~~~p~~~~~v~dd~~~~~~~~~v~~~~~~~~~ 180 (506) T protein:vir:94 104 NSGFDTFNKANDV--DAENYDLFLDMSRYGRAYEYVYRGEDNEE-HLAKLDPLDTFVIYSTDVDPKPIMAVRYHQIELVD 180 (506) T ss_pred HHHHHHHHhccCH--hHHHHHHHHHHHhcCeEEEEEEecCCCee-EEEEEcccceEEEecCCCCCceEEEEEEEeeeecc Confidence 11111 1222322 23455677889999999999998887754 45556665544322211 1111110 Q ss_pred Cce-------EEEEecc-------------------------cEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 149 FNE-------PTAFAPG-------------------------SVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRR 196 (344) Q Consensus 149 ~~~-------~~~~~~~-------------------------eIih~~~~~~~~~~~G~sp~~~~~~~i~~~~~a~~~~~ 196 (344) +.. ...+.++ .|+++++. -.|.|.+......++.-..+..-.. T Consensus 181 ~~~~~~~~~~~~~yt~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~-----~~~~sd~e~~~~liDa~d~~~S~~~ 255 (506) T protein:vir:94 181 DNQVSTINYVPETWTADTYTLYNPTPIMGKMQVDTTKPITTFPVVEFKNS-----NFRLGDFENVLPLIDLYDAAQSDTA 255 (506) T ss_pred CCceeEEEEEEEEEeCceEEEeccccCccceeccccccCCccceEEecCC-----CCCCCchhhhHHHHHHHHHHHHHHH Confidence 000 0001111 23333321 1245555444433332222221111 Q ss_pred HHHHccCCCceEEEecCCCCC----------------------HHHHHHHHHHHHHhhcccccccccccCCCCc----cc Q lcl|Aclame:pro 197 KYYENGAHAGYIMYVTDAVQD----------------------RNDIEMLRENMVKSKGRNNFKNLFLYAPQGK----AD 250 (344) Q Consensus 197 ~~f~Ng~~p~gil~~~~~~~~----------------------~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~----~~ 250 (344) +..+..+.|-.+++ +.... .+....+...++. .+++.+.+++. .. T Consensus 256 ~~~~~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 326 (506) T protein:vir:94 256 NYMTDLNEAMLIIQ--GDIDTLFEGSDMMNTIDPNDEDAMAKLAKDKLELIKEMKD-------ANMLLLKSGMTVNGTQT 326 (506) T ss_pred HHHHHhhhHHHHHh--cCccccccchhccccccccccccccccccchhHHHhhhhh-------cCeeeecccccccCccc Confidence 11121122222221 10000 0111111111111 12233322221 22 Q ss_pred cceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHH----------HHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 251 GIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIE----------KVAKVFVRNELIPLQDRI 320 (344) Q Consensus 251 g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e----------~~~~~f~~~~l~P~~~~i 320 (344) +.+++-|........+.+..+...+.|...-++|+...+-.. ++.++-.++ ...+.++...|...++.+ T Consensus 327 ~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~-~n~Sg~Aik~~~~~l~~k~~~k~~~~~~~l~~~~~li 405 (506) T protein:vir:94 327 SVDAKYINKTYDVVGSEAYKKRVAGDIHKFSHTPDLTDENFA-SNSSGVAMQYKVLGTVELASTKRRMFERGLYARYQII 405 (506) T ss_pred cccceeeeecCCHHHHHHHHHHHHHHHHHHhCcccccccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 333444444455666778888899999999999974322111 111111111 112233344444444443 Q ss_pred HHHHHhhCccceecc--ccccccCCC Q lcl|Aclame:pro 321 REINGWIGQEVIRFK--NYSLDTDNG 344 (344) Q Consensus 321 e~ln~~L~~~~irf~--~y~l~~d~g 344 (344) .++-...+.. ..++ .-.+.|+.+ T Consensus 406 ~~~~~~~~~~-~~~d~~~i~i~f~~~ 430 (506) T protein:vir:94 406 SDIENSIHGD-WTFDPQELTFTFRDN 430 (506) T ss_pred HHHHHhcCCc-cccccccceEEeCCC Confidence 3322222221 1223 335667777 No 218 >protein:vir:1587 Length: 508 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695169;swissprot:trembl:o03928;genbank:gi:23455800;interpro:IPR006432;uniprot:O03928;genbank:GeneID:955566 Probab=21.03 E-value=2.7 Score=18.25 Aligned_cols=282 Identities=11% Similarity=0.073 Sum_probs=118.8 Q ss_pred CCC--------------CCCCCCCcchhhccccccceeEEEcCCceecc-CcchhhhhhhhhccchhhhccccHHHHHHH Q lcl|Aclame:pro 1 MSK--------------KKGKTPQPAAKTMTASAPKMEAFTFGEPVPVL-DRRDILDYVECISNGRWYEPPVSFTGLAKS 65 (344) Q Consensus 1 m~~--------------~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 65 (344) ..+ ++.+....-++..... ..-+-|++|..+. +..+ T Consensus 51 ~g~~~~~~~~~~~~~~~~~~~~sln~~~~i~~~---~A~lv~~e~~~i~v~~~~-------------------------- 101 (508) T protein:vir:15 51 SDKLQYIHYQASDGIKKKRLKNTINMAKTAARR---IASVVFNEKAEIHVKDNN-------------------------- 101 (508) T ss_pred cCCCcccccccCCCCccccceeecchHHHHHHH---HHhhhhCCCceEEeCCch-------------------------- Confidence 111 0000000111111000 0012222221110 0000 Q ss_pred Hhhhhhhhhhhhhcchh-hHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCCCceEEEEEeCcceeecc------- Q lcl|Aclame:pro 66 LRAAVHHSSPIYVKRNI-LASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRG------- 137 (344) Q Consensus 66 ~~~~~~~~~~i~~k~n~-~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~G~~~~L~pl~~~~~~~~------- 137 (344) ..+. +-..+..|.+ ...++..+.+.+..|.+++.+..+..+ +.+..+++..+-+. T Consensus 102 -------------~~~e~l~~il~~n~f--~~~~~~~~e~a~a~G~~~~k~~~d~~~--~~i~~v~ad~~~P~~~d~~~~ 164 (508) T protein:vir:15 102 -------------EADKFLNDVLEDNDF--KNKFEEALEKGVALGGFAMRPYIDGNH--IKIAWVRADQFYPLQSNTNDI 164 (508) T ss_pred -------------HHHHHHHHHHHhccH--HHHHHHHHHHHhhcCceEEEEEEeCCe--eEEEEEcCCeeEEEEEcCCCe Confidence 0000 0011112211 334566677778888888777665432 33444444322110 Q ss_pred -------------ccCceeEEE------cCC------------------ceEEEE---e-----ccc----------EEE Q lcl|Aclame:pro 138 -------------VEEDVYWWV------PSF------------------NEPTAF---A-----PGS----------VFH 162 (344) Q Consensus 138 -------------~~~~~~~~~------~~~------------------~~~~~~---~-----~~e----------Iih 162 (344) ...+.||.. ..+ |..+.+ + +++ ..| T Consensus 165 ~~~af~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e~~~l~~~~~~~g~~~p~f~y 244 (508) T protein:vir:15 165 SEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAY 244 (508) T ss_pred EEEEEEEEEEeecCCCceEEEEEEEEEEecCcceEEEEEEEecCCchhcCcccchhhcccccCCCcceEecCCCcceeEE Confidence 011112210 000 111100 0 011 235 Q ss_pred ecCCCCC----CCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCC--HHHHHHHHHHHHHhhcccc Q lcl|Aclame:pro 163 LLEPDIN----QELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQD--RNDIEMLRENMVKSKGRNN 236 (344) Q Consensus 163 ~~~~~~~----~~~~G~sp~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~--~e~~~~l~~~~~~~~g~~n 236 (344) ++.+-++ +..+|+|.+..+...+......-.-..+-|+.|- +..+ +++..+. ++.. ..| +. T Consensus 245 ~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~-~~i~--v~~~~l~~d~~~~----~~~------~~ 311 (508) T protein:vir:15 245 FKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQ-KHIA--VQPGMLRFDDEHK----PTF------DT 311 (508) T ss_pred ecCCccccccCCCCcCCchHhhhHHHHHHHHHHHHHHHHHHHhcc-ccee--echHHhcCCCCCc----ccc------CC Confidence 5544333 2357999999988877765554444445556553 3322 2222211 1100 011 11 Q ss_pred cccccccCCCCccccceeeeccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHH------------ Q lcl|Aclame:pro 237 FKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKV------------ 304 (344) Q Consensus 237 ~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~------------ 304 (344) ..+.+...+.....|..++.++..-.+.++.+.-+...+.|....|++|..+|+..++. .++++. T Consensus 312 ~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~~~~~~gls~~~f~~~~~~~---~TAtei~s~~~~~~~t~~ 388 (508) T protein:vir:15 312 EQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV---KTATEVVSNNSMTYQTRS 388 (508) T ss_pred CCeeEEeccCCCCCCCceeEeecccChHHHHHHHHHHHHHHHHHhCCCchhcccccCcc---ccHHHHHHHHHHHHHHHH Confidence 12223222223344556777777767888999999999999999999999999754332 233332 Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhh---Cccceec------cc--cccccCCC Q lcl|Aclame:pro 305 -AKVFVRNELIPLQDRIREINGWI---GQEVIRF------KN--YSLDTDNG 344 (344) Q Consensus 305 -~~~f~~~~l~P~~~~ie~ln~~L---~~~~irf------~~--y~l~~d~g 344 (344) .+..++..|..++..|.++-..+ ......| .+ -.++|++| T Consensus 389 ~~~~~~~~al~~lv~~il~l~~~~~~~~~g~~~~~~~~~~~~~~v~v~f~D~ 440 (508) T protein:vir:15 389 SYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDG 440 (508) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccCCcceEEEeCCC Confidence 12223344444444433322211 1111111 12 35788888 No 219 >protein:vir:3361 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523332;genbank:gi:17570823;genbank:GeneID:927409 Probab=20.14 E-value=2.8 Score=18.11 Aligned_cols=306 Identities=12% Similarity=0.052 Sum_probs=124.9 Q ss_pred CCCCCCCCCCcchhhccccccceeEEEcCCceeccCcchhhhhh--hhhccchhhhccccHHHHHHHHhhh---hhhhhh Q lcl|Aclame:pro 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYV--ECISNGRWYEPPVSFTGLAKSLRAA---VHHSSP 75 (344) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~l~~~~~~~---~~~~~~ 75 (344) |..........-.. .| ++........+-..+ .++-...|+..-++-..+.+..... .-...- T Consensus 44 ~~~~~~~~~~~~~~----------~~---dst~~~a~~~Laa~l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~ 110 (535) T protein:vir:33 44 FPKESDNESTDYTT----------PW---QAVGARGLNNLASKLMLALFPMQSWMKLTISEYEAKQLVGDPDGLAKVDEG 110 (535) T ss_pred cCCCCCcccccccc----------cc---cccHHHHHHHHHHHHHHhhcCCCcccccccChHHHhccccCcchHHHHHHH Confidence 22111110000000 00 110000000000000 0001112332222111111111000 000000 Q ss_pred hhh-cchhhHHhhhcCCCCCHHHHHHHHHHHHhcCCceEEEeeCCC-CceEEEEEeCcceeeccccCc------------ Q lcl|Aclame:pro 76 IYV-KRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTT-GKVIRLETSPAKYTRRGVEED------------ 141 (344) Q Consensus 76 i~~-k~n~~~~~~~pnp~~~~~~~~~~~~d~ll~Gnay~~~~r~~~-G~~~~L~pl~~~~~~~~~~~~------------ 141 (344) +.. .+.........| .+..+-.+..|++++|||.+++..+.. +.....+|+...++.....++ T Consensus 111 l~~ve~~~~~~~~~sn---f~~~~~~~~~~L~~~G~a~l~~~~~~~~~~~f~~~pl~~~~v~~d~~G~vd~i~r~~~~t~ 187 (535) T protein:vir:33 111 LSMVERIIMNYIESNS---YRVTLFECLKQLIVAGNALLYLPEPEGSYNPMKLYRLSSYVVQRDAYGNVLQIVTRDQIAF 187 (535) T ss_pred HHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhhCceeEEeecCCCCceeeEEEEcCeeEEeeCCCCCeeEEEeeEeecH Confidence 000 000111111222 345566778899999999988865532 234556666544443322211 Q ss_pred -------------------------eeE---EEcCCceEEE-----------------EecccEEEecCCCCCCCccccc Q lcl|Aclame:pro 142 -------------------------VYW---WVPSFNEPTA-----------------FAPGSVFHLLEPDINQELYGLP 176 (344) Q Consensus 142 -------------------------~~~---~~~~~~~~~~-----------------~~~~eIih~~~~~~~~~~~G~s 176 (344) .|. ....++.... |..-..+..|-.-..+..||.| T Consensus 188 ~ql~~~~~~~~~~~~~~k~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~Rw~~~~ge~YGrg 267 (535) T protein:vir:33 188 GALPEDVRSAVEKSGGEKKMDEMVDVYTHVYLDEESGDYLKYEEVEDVEIDGSDATYPTDAMPYIPVRMVRIDGESYGRS 267 (535) T ss_pred HHHHHHhhhhhcccccccccccCCeEEEEEEeeCCCCcEEEEEEEeCccccccccccccccCCceeeeeeecCCCccccc Confidence 010 0011111110 1111223333222345789999 Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEecCCCCCHHHHHHHHHHHHHhhcccccccccccCCCCccccceeee Q lcl|Aclame:pro 177 EYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIP 256 (344) Q Consensus 177 p~~~~~~~i~~~~~a~~~~~~~f~Ng~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~p 256 (344) |..-++..+..-+...+-....-.-...|.+++. +++.....+ + ..|+.+ .++. +..+++...| T Consensus 268 p~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~lv~-~~g~~~~~~-------~--~~~~~g---~~v~---g~~~~v~~~~ 331 (535) T protein:vir:33 268 YCEEYLGDLRSLENLQEAIVKMSMISAKVIGLVN-PAGITQPRR-------L--TKAQTG---DFVP---GRREDIDFLQ 331 (535) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeec-cccccchhh-------c--ccCCce---eeec---CCcccceeee Confidence 9999998888888888888888888888886653 343332221 1 111111 2222 1235666777 Q ss_pred ccCChhHHHHHHHHHhhHHHHHHHhcCChHHhccccccccccccHHHHHH--HHHHHHHHHHHHHHHH-HHHhh------ Q lcl|Aclame:pro 257 LSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAK--VFVRNELIPLQDRIRE-INGWI------ 327 (344) Q Consensus 257 l~~~~~d~qf~e~~~~~~~~I~~~fgVPp~llG~~~~~~~~~~n~e~~~~--~f~~~~l~P~~~~ie~-ln~~L------ 327 (344) +...++=.--.+.-+..+..|-.+|=+. .+..... ..-++++... .=....|.|...+|.+ +-.-| T Consensus 332 ~~~~~~~~~~~~~i~~~~~~I~~af~~~--~~~~~~~---~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~ 406 (535) T protein:vir:33 332 LEKQADFTVAKAVSDQIEARLSYAFMLN--SAVQRTG---ERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLK 406 (535) T ss_pred cccccchhHHHHHHHHHHHHHHHHHhhh--hcccCCC---ccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH Confidence 6655432223455556778888888443 2222211 2234455333 2234455565555532 21111 Q ss_pred -------CccceeccccccccCCC Q lcl|Aclame:pro 328 -------GQEVIRFKNYSLDTDNG 344 (344) Q Consensus 328 -------~~~~irf~~y~l~~d~g 344 (344) .++.- -+.+++++..| T Consensus 407 il~r~g~lP~~p-~~~v~~~yis~ 429 (535) T protein:vir:33 407 QLQATSQIPELP-KEAVEPTISTG 429 (535) T ss_pred HHHhcCCCCCCC-ccceeEEEecH Confidence 11110 12355666666 Done!