BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:1644|NCBI_annot:Structural protein|genbank:acc:NP_695065;genbank:gi:23455756;genbank:GeneID:95548 6 (185 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|18502|lcl|protein:vir:1644 Length: 185 # NCBI annotation: Str... 371 e-105 gi|4248|lcl|protein:vir:94739 Length: 185 # NCBI annotation: maj... 367 e-104 gi|19189|lcl|protein:vir:9580 Length: 183 # NCBI annotation: unk... 228 3e-62 gi|13490|lcl|protein:vir:9765 Length: 196 # NCBI annotation: put... 223 8e-61 gi|14015|lcl|protein:vir:8194 Length: 197 # NCBI annotation: gp1... 83 2e-18 gi|6399|lcl|protein:vir:98437 Length: 184 # NCBI annotation: ORF... 77 1e-16 gi|14686|lcl|protein:vir:2509 Length: 204 # NCBI annotation: maj... 65 4e-13 gi|7515|lcl|protein:vir:99926 Length: 204 # NCBI annotation: gp1... 59 5e-11 gi|12981|lcl|protein:vir:80670 Length: 213 # NCBI annotation: gp... 52 4e-09 gi|16484|lcl|protein:vir:7778 Length: 198 # NCBI annotation: gp2... 28 0.082 gi|3569|lcl|protein:vir:101656 Length: 324 # NCBI annotation: gp... 27 0.13 gi|19394|lcl|protein:vir:7861 Length: 324 # NCBI annotation: gp1... 27 0.13 gi|11001|lcl|protein:vir:78275 Length: 282 # NCBI annotation: Pu... 26 0.28 gi|19796|lcl|protein:vir:2349 Length: 283 # NCBI annotation: gp1... 26 0.31 gi|11245|lcl|protein:vir:78506 Length: 282 # NCBI annotation: gp... 26 0.32 >gi|18502|lcl|protein:vir:1644 Length: 185 # NCBI annotation: Structural protein # Family: family:all:698 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695065;genbank:gi:23455756;genbank:GeneID :955486 Length = 185 Score = 371 bits (953), Expect = e-105, Method: Compositional matrix adjust. Identities = 185/185 (100%), Positives = 185/185 (100%) Query: 1 MAQVENVTTAKPKIDGAIYSAPKGTALPTDAKPTLNIAFKPLGYISEDGLKNKNSPKSDS 60 MAQVENVTTAKPKIDGAIYSAPKGTALPTDAKPTLNIAFKPLGYISEDGLKNKNSPKSDS Sbjct: 1 MAQVENVTTAKPKIDGAIYSAPKGTALPTDAKPTLNIAFKPLGYISEDGLKNKNSPKSDS 60 Query: 61 IKAWGGDTVATVQTEKEDTFSYTLIEALNVEVLKEVYGADNVTGTLKTGITVKANSKELI 120 IKAWGGDTVATVQTEKEDTFSYTLIEALNVEVLKEVYGADNVTGTLKTGITVKANSKELI Sbjct: 61 IKAWGGDTVATVQTEKEDTFSYTLIEALNVEVLKEVYGADNVTGTLKTGITVKANSKELI 120 Query: 121 EHPVVIDMTVRNGVFKRIVIPQGKVSEIGDISYNDSDAVGFEITLTGLPDKAGNSHYDYI 180 EHPVVIDMTVRNGVFKRIVIPQGKVSEIGDISYNDSDAVGFEITLTGLPDKAGNSHYDYI Sbjct: 121 EHPVVIDMTVRNGVFKRIVIPQGKVSEIGDISYNDSDAVGFEITLTGLPDKAGNSHYDYI 180 Query: 181 LDTTV 185 LDTTV Sbjct: 181 LDTTV 185 >gi|4248|lcl|protein:vir:94739 Length: 185 # NCBI annotation: major tail protein # Family: family:all:698 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996712;genbank:gi:45597427;genbank:GeneID :2767963 Length = 185 Score = 367 bits (943), Expect = e-104, Method: Compositional matrix adjust. Identities = 182/185 (98%), Positives = 184/185 (99%) Query: 1 MAQVENVTTAKPKIDGAIYSAPKGTALPTDAKPTLNIAFKPLGYISEDGLKNKNSPKSDS 60 MAQVENVTTAKPKIDGAIYSAPKGTALPTDA+ TLN+AFKPLGYISEDGLKNKNSPKSDS Sbjct: 1 MAQVENVTTAKPKIDGAIYSAPKGTALPTDARTTLNVAFKPLGYISEDGLKNKNSPKSDS 60 Query: 61 IKAWGGDTVATVQTEKEDTFSYTLIEALNVEVLKEVYGADNVTGTLKTGITVKANSKELI 120 IKAWGGDTVATVQTEKEDTFSYTLIEALNVEVLKEVYGADNVTGTLKTGITVKANSKELI Sbjct: 61 IKAWGGDTVATVQTEKEDTFSYTLIEALNVEVLKEVYGADNVTGTLKTGITVKANSKELI 120 Query: 121 EHPVVIDMTVRNGVFKRIVIPQGKVSEIGDISYNDSDAVGFEITLTGLPDKAGNSHYDYI 180 EHPVVIDMTVRNGVFKRIVIPQGKVSEIGDISYNDSDAVGFEITLTGLPDKAGNSHYDYI Sbjct: 121 EHPVVIDMTVRNGVFKRIVIPQGKVSEIGDISYNDSDAVGFEITLTGLPDKAGNSHYDYI 180 Query: 181 LDTTV 185 LDTTV Sbjct: 181 LDTTV 185 >gi|19189|lcl|protein:vir:9580 Length: 183 # NCBI annotation: unknown # Family: family:all:698 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862885;genbank:gi:32469421;genbank:GeneID :1461322 Length = 183 Score = 228 bits (581), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 111/180 (61%), Positives = 139/180 (77%) Query: 1 MAQVENVTTAKPKIDGAIYSAPKGTALPTDAKPTLNIAFKPLGYISEDGLKNKNSPKSDS 60 MA NVTTAKPKI GA+YSAP GTALPTDA L+ AF+ LGYIS+DG+ N NSP+S++ Sbjct: 1 MATEANVTTAKPKIGGAVYSAPLGTALPTDATTKLDQAFEALGYISDDGMTNSNSPESEN 60 Query: 61 IKAWGGDTVATVQTEKEDTFSYTLIEALNVEVLKEVYGADNVTGTLKTGITVKANSKELI 120 IKAWGG V++VQ EK DTF Y LIEALN+ VLKEVYG DNV+G L +GIT+KANSKEL Sbjct: 61 IKAWGGVVVSSVQKEKTDTFKYMLIEALNLHVLKEVYGPDNVSGDLSSGITIKANSKELP 120 Query: 121 EHPVVIDMTVRNGVFKRIVIPQGKVSEIGDISYNDSDAVGFEITLTGLPDKAGNSHYDYI 180 H +VI+ ++ GV KRIVIP GKV+ I +I+YND +G+ T+T P+ A ++HY+YI Sbjct: 121 HHCLVIETVLKGGVLKRIVIPSGKVTAIDEITYNDGSVLGYGTTVTAFPNAADDTHYEYI 180 >gi|13490|lcl|protein:vir:9765 Length: 196 # NCBI annotation: putative structural protein # Family: family:all:698 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795527;genbank:gi:28876277;genbank:GeneID :1257818 Length = 196 Score = 223 bits (569), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 107/177 (60%), Positives = 136/177 (76%) Query: 5 ENVTTAKPKIDGAIYSAPKGTALPTDAKPTLNIAFKPLGYISEDGLKNKNSPKSDSIKAW 64 +NVT+AKPK GAIYSAP GT LP DAK L+ FK LGY+SEDG+ N+++ S++IKAW Sbjct: 6 KNVTSAKPKAGGAIYSAPLGTTLPEDAKSKLDTKFKNLGYVSEDGVVNEDTRSSENIKAW 65 Query: 65 GGDTVATVQTEKEDTFSYTLIEALNVEVLKEVYGADNVTGTLKTGITVKANSKELIEHPV 124 GGD V +VQTEKED F+Y LIE+LNVEVLKEVYGA NVTG L GI +K+NSKEL H + Sbjct: 66 GGDIVGSVQTEKEDKFTYKLIESLNVEVLKEVYGAANVTGDLDKGIHIKSNSKELEAHAI 125 Query: 125 VIDMTVRNGVFKRIVIPQGKVSEIGDISYNDSDAVGFEITLTGLPDKAGNSHYDYIL 181 VIDM + G+ KRIV+P KV E+G+I Y D + VG+E TL PD+ G++H++YI+ Sbjct: 126 VIDMIMNGGILKRIVLPNAKVDEVGEIKYVDGEVVGYETTLKCFPDEKGDTHHEYIV 182 >gi|14015|lcl|protein:vir:8194 Length: 197 # NCBI annotation: gp14 # Family: family:all:698 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817987;genbank:gi:29566421;genbank:GeneID :2700975 Length = 197 Score = 83.2 bits (204), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 91/170 (53%), Gaps = 8/170 (4%) Query: 1 MAQVENVTTA-KPKIDGAIYSAPKGTALPTDAKPTLNIAFKPLGYISEDGLKNKNSPKSD 59 MA +NV A + D A + AP GT LPTDA L+ A +P G++ +DG N Sbjct: 1 MADSKNVWAAGRSADDEAFFGAPLGTPLPTDAIAELDAALEPHGWMGDDGFVNNIQRDVT 60 Query: 60 SIKAWGGDTVATVQTEKEDTFSYTLIEALNVEVLKEVYGADNVTGTLKTG---ITVKANS 116 K + G T+ T Q E+T + T E+ N VLK V+G NV G IT++ + Sbjct: 61 KHKDFAGTTIKTTQDNYEETVAVTCCES-NPVVLKTVFGDSNVDVDFTDGHRKITIRHDE 119 Query: 117 KELIEHPVVIDMTVRNGVFKR-IVIPQGKVSEIGDISYNDSDAVGFEITL 165 L V+ V +GV R +VIP+G+V+EIG++++ S+ V + +T+ Sbjct: 120 APLPRKSFVV--RVVDGVKTRMLVIPEGQVTEIGEVTWLSSELVQYTLTI 167 >gi|6399|lcl|protein:vir:98437 Length: 184 # NCBI annotation: ORFp27 # Family: family:all:698 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958286;genbank:gi:41057260;uniprot:Q38601 ;genbank:GeneID:2732821 Length = 184 Score = 77.4 bits (189), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 90/174 (51%), Gaps = 9/174 (5%) Query: 9 TAKPKI-DGA-IYSAPKGTALPTDAKPTLNIAFKPLGYISEDGLKNKNSPKSDSIKAWGG 66 T P++ +GA Y+AP GT PT+ L+ A+ P+G +SEDG S AWGG Sbjct: 5 TDNPRLWEGADFYAAPVGTTAPTNVATALDPAWLPVGLLSEDGASESRDQDSTDFYAWGG 64 Query: 67 DTVATVQTEKEDTFSYTLIEALNVEVLKEVY-GADNVTGTLKTGITVKANSKELIEHPVV 125 V T +++ + T +E N+ V V G+ VT T T TVK + P Sbjct: 65 VLVRTAKSKHKRQIVVTCLEE-NLVVFGLVNPGSSAVTATGVTTRTVKVPKAD----PRA 119 Query: 126 IDMTVRNG-VFKRIVIPQGKVSEIGDISYNDSDAVGFEITLTGLPDKAGNSHYD 178 + +R+G V KR VIP+G+V +G+++ +DS +E+T+T P G + D Sbjct: 120 FVLELRDGAVKKRRVIPKGEVESVGEVTLSDSALTAYELTITIYPAADGTLYLD 173 >gi|14686|lcl|protein:vir:2509 Length: 204 # NCBI annotation: major tail subunit gp14 # Family: family:all:698 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569750;genbank:gi:18496900;genbank:GeneID :932335 Length = 204 Score = 65.5 bits (158), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 6/169 (3%) Query: 16 GAIYSAPKGTALPTDAKPTLNIAFKPLGYISEDGLKNKNSPKSDSIKAWGGDTVATVQTE 75 G ++ AP GT LPTD L+ FK LG+IS +G+ K ++ I+ WGGD + ++ + Sbjct: 29 GGLWYAPFGTPLPTDVDEPLDDKFKNLGFISVEGVTVKIDDQTKPIEVWGGDEIGALRDK 88 Query: 76 KEDTFSYTLIEALNVEVLKEVYGADNVTGTLKTG-----ITVKANSKELIEHPVVIDMTV 130 +S L + L+ EV ++G NV + T + V NSK +V+D Sbjct: 89 FAIEYSMKLFQVLSPEVNAAIFGEGNVLTSEATAMHGARMKVLINSKLPKRCSLVLDSVY 148 Query: 131 RNGVFKRIVIPQGKVSEIGDISYNDSDAVGFEITLTGLPDKAGNSHYDY 179 + + +++ K + D+ ++ + FE T L GN Y Sbjct: 149 EDKMIRQVAQIAQKAG-LADLKLVHNEPMAFEPTFKVLKGTDGNHVVQY 196 >gi|7515|lcl|protein:vir:99926 Length: 204 # NCBI annotation: gp13 # Family: family:all:698 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655530;genbank:gi:109392300;genbank:GeneI D:4157095 Length = 204 Score = 58.5 bits (140), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 81/170 (47%), Gaps = 6/170 (3%) Query: 2 AQVENVTTAKPKIDGAIYSAPKGTALPTDAKPTLNIAFKPLGYISEDGLKNKNSPKSDSI 61 +QV T + + G +Y AP GT LPTD L+ FK LGY+S DG+ + I Sbjct: 14 SQVFAATPSGLQTAGGLYIAPAGTDLPTDVDEPLDPLFKSLGYVSSDGVTISIDGSTTPI 73 Query: 62 KAWGGDTVATVQTEKEDTFSYTLIEALNVEVLKEVYGADNVTGTLKTG-----ITVKANS 116 + W G+ + +++ +S +L + L+ V ++G +VT T + V +S Sbjct: 74 EVWSGERIGSLRDAFAIEYSMSLYQVLSPHVNAVIFGDGSVTTAAATAEHGNRMKVAISS 133 Query: 117 KELIEHPVVIDMTVRNGVFKRIVIPQGKVSEIGDISYNDSDAVGFEITLT 166 + +V+D + ++ V ++S+I DI+ ++ + F T + Sbjct: 134 RMPKMASLVLDAFFEDKAIRQ-VAELVQMSDIDDITLVHNEPMAFTPTFS 182 >gi|12981|lcl|protein:vir:80670 Length: 213 # NCBI annotation: gp11 # Family: family:all:698 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285587;genbank:gi:148727093;genbank:Ge neID:5247041 Length = 213 Score = 52.0 bits (123), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 4/170 (2%) Query: 1 MAQVENVTTAKPKIDGAIYSAPKGTALPTDAKPTLNIAFKPLGYISEDGLKNKNSPKSDS 60 MA + + + G +Y D T+ LGY+S+DG K K K+D Sbjct: 1 MAGTRKASNVRSAVTGDVYIGKAHAGDTIDGVKTVPDGLTALGYLSDDGFKIKPERKTDD 60 Query: 61 IKAW-GGDTVATVQTEKEDTFSYTLIEALNVEVLKEVYGADNVTGTLKTGITVKANSKEL 119 +KAW D V TV TE S+ LIE+ EV+ E++ VT +G + Sbjct: 61 LKAWQNADVVRTVATESSIEISFQLIESKK-EVI-ELFWQSKVTAGADSGSFDISPGATT 118 Query: 120 IEHPVVIDMTVRNGVFKRIVIPQGKVSEIGDISYNDSDAVGFEITLTGLP 169 H +++D+ + V R P+ ++ + +I + + G+ +TL P Sbjct: 119 GVHALLMDIVDGDQVI-RYYFPEVELIDRDEIKGKNGEVYGYGVTLKAYP 167 >gi|16484|lcl|protein:vir:7778 Length: 198 # NCBI annotation: gp23 # Family: family:all:2431 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817612;genbank:gi:29566042;genbank:GeneID :1259236 Length = 198 Score = 27.7 bits (60), Expect = 0.082, Method: Compositional matrix adjust. Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 12/100 (12%) Query: 16 GAIYSAPKGTALPTDAK-PTLNIA----FKPLGYISEDGLKNKNSPK-------SDSIKA 63 G +Y+AP GTA PT A+ TLN+ + P G+ S + P+ ++ + Sbjct: 14 GYVYTAPVGTAAPTPAQLKTLNLTDTGLWTPTGWDSIGHTSRGDMPEFGFDGGDTEVRGS 73 Query: 64 WGGDTVATVQTEKEDTFSYTLIEALNVEVLKEVYGADNVT 103 W + V TE + + + + + YGA+ T Sbjct: 74 WQKKKLREVTTEDPVDYLTLFLHQFDEQAFELYYGANAST 113 >gi|3569|lcl|protein:vir:101656 Length: 324 # NCBI annotation: gp19 # Family: family:all:1912 # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654774;genbank:gi:109302772;genbank:GeneI D:4156090 Length = 324 Score = 27.3 bits (59), Expect = 0.13, Method: Compositional matrix adjust. Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 6/140 (4%) Query: 39 FKPLGYISEDGLKNKNSPKSDSIKAWGGDTVATVQ-TEKEDTFSYTLIEALN-VEVLKEV 96 F +G I+EDG++ +D K W TE ++ +T E ++ L+ Sbjct: 64 FYEIGAITEDGVEFNPKFSTDDTKIWQSRRAQRTDVTEDDEEVMFTAAENTPLIDYLRYN 123 Query: 97 YGADNVTGTLKTGI-TVKANSKELIEHPVV---IDMTVRNGVFKRIVIPQGKVSEIGDIS 152 +NV G K N +++ +V +D + + V P+ ++++G S Sbjct: 124 LPLENVPSVGTAGYKATKPNYTDMVYRQIVVIGVDGRMDEAEYVAEVRPRVSLTKVGKQS 183 Query: 153 YNDSDAVGFEITLTGLPDKA 172 + + G E+T PD A Sbjct: 184 FKAKEIDGTELTFGVYPDPA 203 >gi|19394|lcl|protein:vir:7861 Length: 324 # NCBI annotation: gp18 # Family: family:all:1912 # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817468;genbank:gi:29565897;genbank:GeneID :1259090 Length = 324 Score = 27.3 bits (59), Expect = 0.13, Method: Compositional matrix adjust. Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 6/140 (4%) Query: 39 FKPLGYISEDGLKNKNSPKSDSIKAWGGDTVATVQ-TEKEDTFSYTLIEALN-VEVLKEV 96 F +G I+EDG++ +D K W TE ++ +T E ++ L+ Sbjct: 64 FYEIGAITEDGVEFNPKFSTDDTKIWQSRRAQRTDVTEDDEEVMFTAAENTPLIDYLRYN 123 Query: 97 YGADNVTGTLKTGI-TVKANSKELIEHPVV---IDMTVRNGVFKRIVIPQGKVSEIGDIS 152 +NV G K N +++ +V +D + + V P+ ++++G S Sbjct: 124 LPLENVPSVGTAGYKATKPNYTDMVYRQIVVIGVDGRMDEAEYVAEVRPRVSLTKVGKQS 183 Query: 153 YNDSDAVGFEITLTGLPDKA 172 + + G E+T PD A Sbjct: 184 FKAKEIDGTELTFGVYPDPA 203 >gi|11001|lcl|protein:vir:78275 Length: 282 # NCBI annotation: Putative major tail protein # Family: family:all:2431 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491672;genbank:gi:157786496;genbank:Ge neID:5625753 Length = 282 Score = 26.2 bits (56), Expect = 0.28, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 24/140 (17%) Query: 16 GAIYSAPKGTALPTDAKPTL----------NIAFKPLGYISEDGLKNKNSPKSDS--IKA 63 G +Y+A GTA PT ++ L ++ +G+ SED L DS + Sbjct: 14 GYVYTAAVGTAAPTPSQLKLIDLEHPEAWERTGWELVGHTSEDDLPEFGFDGGDSEVRGS 73 Query: 64 WGGDTVATVQTEKEDTFSYTLIEALNV-EVLKEVYGADNVTGT-----LKTGITVKANSK 117 W + V+T E+ Y +I E E+Y N + T +K+G V N + Sbjct: 74 WQKKKLREVET--EEIADYVVINLTQFDESALELYFGPNQSATPGIFGVKSGSVV--NER 129 Query: 118 ELIEHPVVIDMTVRNGVFKR 137 L+ V++D VR G R Sbjct: 130 ALL--IVIVDNDVRLGFHAR 147 >gi|19796|lcl|protein:vir:2349 Length: 283 # NCBI annotation: gp19 # Family: family:all:2431 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075286;genbank:gi:12657873;genbank:GeneID :920104 Length = 283 Score = 26.2 bits (56), Expect = 0.31, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 24/140 (17%) Query: 16 GAIYSAPKGTALPTDAKPTL----------NIAFKPLGYISEDGLKNKNSPKSDS--IKA 63 G +Y+A GTA PT ++ L + +G+ SED L DS + Sbjct: 14 GYVYTAAVGTAAPTPSQLKLIDLEHPEAWDRTGWDLVGHTSEDDLPEFGFDGGDSEVRGS 73 Query: 64 WGGDTVATVQTEKEDTFSYTLIEALNV-EVLKEVYGADNVTGT-----LKTGITVKANSK 117 W + V+TE+ Y +I E E+Y N + T +K+G V N + Sbjct: 74 WQKKKLREVETEE--IADYVVINLTQFDETALELYFGPNQSATPGIFGVKSGSVV--NER 129 Query: 118 ELIEHPVVIDMTVRNGVFKR 137 L+ V++D VR G R Sbjct: 130 ALL--IVIVDNDVRLGFHAR 147 >gi|11245|lcl|protein:vir:78506 Length: 282 # NCBI annotation: gp20 # Family: family:all:2431 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491591;genbank:gi:157786414;genbank:Ge neID:5625658 Length = 282 Score = 25.8 bits (55), Expect = 0.32, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 24/140 (17%) Query: 16 GAIYSAPKGTALPTDAKPTL----------NIAFKPLGYISEDGLKNKNSPKSDS--IKA 63 G +Y+A GTA P+ A+ L + +G+ SED L DS + Sbjct: 14 GYVYTAAVGTAAPSPAQLKLIDLEHPEAWERTGWDLVGHTSEDDLPEFGFDGGDSEVRGS 73 Query: 64 WGGDTVATVQTEKEDTFSYTLIEALNV-EVLKEVYGADNVTGT-----LKTGITVKANSK 117 W + V+T E+ Y +I E E+Y N + T +K+G V N + Sbjct: 74 WQKKKLREVET--EEIADYVVINLTQFDETALELYFGPNQSATPGIFGVKSGSVV--NER 129 Query: 118 ELIEHPVVIDMTVRNGVFKR 137 L+ V++D VR G R Sbjct: 130 ALL--IVIVDNDVRLGFHAR 147 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.311 0.131 0.365 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,430 Number of Sequences: 514 Number of extensions: 3760 Number of successful extensions: 28 Number of sequences better than 100.0: 18 Number of HSP's better than 100.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 18 length of query: 185 length of database: 206,069 effective HSP length: 66 effective length of query: 119 effective length of database: 172,145 effective search space: 20485255 effective search space used: 20485255 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 34 (17.7 bits)