BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:4222|NCBI_annot:predicted 66.2Kd protein|genbank:acc:NP_039677;swissprot:sw:q05219;genbank:gi:9625443;u niprot:Q05219;genbank:GeneID:2942932;interpro:IPR005021 (593 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|16679|lcl|protein:vir:4222 Length: 593 # NCBI annotation: pre... 1231 0.0 gi|17795|lcl|protein:vir:2426 Length: 595 # NCBI annotation: gp1... 1122 0.0 gi|9490|lcl|protein:vir:104081 Length: 594 # NCBI annotation: gp... 1114 0.0 gi|16473|lcl|protein:vir:7767 Length: 566 # NCBI annotation: gp1... 910 0.0 gi|19787|lcl|protein:vir:2340 Length: 562 # NCBI annotation: gp1... 825 0.0 gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Pu... 785 0.0 gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Pu... 593 e-171 gi|6388|lcl|protein:vir:98470 Length: 536 # NCBI annotation: hyp... 258 1e-70 gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp3... 81 3e-17 gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp3... 81 4e-17 gi|18273|lcl|protein:vir:7986 Length: 545 # NCBI annotation: gp2... 64 4e-12 gi|9695|lcl|protein:vir:102601 Length: 545 # NCBI annotation: gp... 63 8e-12 gi|8440|lcl|protein:vir:105818 Length: 545 # NCBI annotation: gp... 63 8e-12 gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: put... 39 1e-04 gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp... 39 1e-04 gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: te... 39 2e-04 gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: ph... 39 2e-04 gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: pu... 38 3e-04 gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: ph... 38 3e-04 gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: put... 37 6e-04 gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: ter... 37 6e-04 gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putati... 37 6e-04 gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Ter... 36 0.001 gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp... 36 0.001 gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: lar... 36 0.001 gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: term... 33 0.009 gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: ter... 33 0.010 gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: termi... 32 0.028 gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hyp... 30 0.061 gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: pu... 29 0.14 gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: pu... 28 0.20 gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: pu... 27 0.52 gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hyp... 26 1.4 gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: pu... 26 1.5 gi|5606|lcl|protein:vir:107886 Length: 500 # NCBI annotation: gp... 25 1.8 gi|8010|lcl|protein:vir:100250 Length: 570 # NCBI annotation: gp... 25 2.9 gi|14832|lcl|protein:vir:4098 Length: 192 # NCBI annotation: maj... 24 5.8 gi|25348|lcl|protein:vir:80989 Length: 607 # NCBI annotation: gp... 23 7.1 gi|27123|lcl|protein:vir:6593 Length: 607 # NCBI annotation: ter... 23 7.8 >gi|16679|lcl|protein:vir:4222 Length: 593 # NCBI annotation: predicted 66.2Kd protein # Family: family:all:1551 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039677;swissprot:sw:q05219;genbank:gi:962 5443;uniprot:Q05219;genbank:GeneID:2942932;interpro:IPR0 05021 Length = 593 Score = 1231 bits (3185), Expect = 0.0, Method: Compositional matrix adjust. Identities = 593/593 (100%), Positives = 593/593 (100%) Query: 1 MSLNNHHPELAPSPPHIIGPSWQKTVDGEWYLPEKTLGWGVLKWLSEYVNTPGGHDDPNR 60 MSLNNHHPELAPSPPHIIGPSWQKTVDGEWYLPEKTLGWGVLKWLSEYVNTPGGHDDPNR Sbjct: 1 MSLNNHHPELAPSPPHIIGPSWQKTVDGEWYLPEKTLGWGVLKWLSEYVNTPGGHDDPNR 60 Query: 61 LATLIALSEAGLLDNENMFIPTDEQVRLVLWWYAVDDQGQYIYREGVIRRLKGWGKDPFT 120 LATLIALSEAGLLDNENMFIPTDEQVRLVLWWYAVDDQGQYIYREGVIRRLKGWGKDPFT Sbjct: 61 LATLIALSEAGLLDNENMFIPTDEQVRLVLWWYAVDDQGQYIYREGVIRRLKGWGKDPFT 120 Query: 121 AALCLAELCGPVAFSHFDADGNPVGKPRSAAWITVAAVSQDQTKNTFSLFPVMISKKLKA 180 AALCLAELCGPVAFSHFDADGNPVGKPRSAAWITVAAVSQDQTKNTFSLFPVMISKKLKA Sbjct: 121 AALCLAELCGPVAFSHFDADGNPVGKPRSAAWITVAAVSQDQTKNTFSLFPVMISKKLKA 180 Query: 181 EYGLDVNRFIIYSAAGGRIEAATSSPASMEGNRPTFVVQNETQWWGQGPDGKVNEGHAMA 240 EYGLDVNRFIIYSAAGGRIEAATSSPASMEGNRPTFVVQNETQWWGQGPDGKVNEGHAMA Sbjct: 181 EYGLDVNRFIIYSAAGGRIEAATSSPASMEGNRPTFVVQNETQWWGQGPDGKVNEGHAMA 240 Query: 241 EVIEGNMTKVEGSRTLSICNAHIPGTETVAEKAWDEYQKVQAGDSVDTGMMYDALEAPAD 300 EVIEGNMTKVEGSRTLSICNAHIPGTETVAEKAWDEYQKVQAGDSVDTGMMYDALEAPAD Sbjct: 241 EVIEGNMTKVEGSRTLSICNAHIPGTETVAEKAWDEYQKVQAGDSVDTGMMYDALEAPAD 300 Query: 301 TPVSEIPPQKEDPEGFEKGIEKLREGLLIARGDSTWLPIDDIIKSILSTKNPITESRRKF 360 TPVSEIPPQKEDPEGFEKGIEKLREGLLIARGDSTWLPIDDIIKSILSTKNPITESRRKF Sbjct: 301 TPVSEIPPQKEDPEGFEKGIEKLREGLLIARGDSTWLPIDDIIKSILSTKNPITESRRKF 360 Query: 361 LNQVNAAEDSWLSPQEWNRCQVDLAKYLDKHGREFAPLQRGDRITLGFDGSKSNDWTALV 420 LNQVNAAEDSWLSPQEWNRCQVDLAKYLDKHGREFAPLQRGDRITLGFDGSKSNDWTALV Sbjct: 361 LNQVNAAEDSWLSPQEWNRCQVDLAKYLDKHGREFAPLQRGDRITLGFDGSKSNDWTALV 420 Query: 421 GCRVSDGLLFVIDIWDPQKYGGEVPREDVDAKVHSAFAHYDVVAFRADVKEFEAYVDQWG 480 GCRVSDGLLFVIDIWDPQKYGGEVPREDVDAKVHSAFAHYDVVAFRADVKEFEAYVDQWG Sbjct: 421 GCRVSDGLLFVIDIWDPQKYGGEVPREDVDAKVHSAFAHYDVVAFRADVKEFEAYVDQWG 480 Query: 481 RTYKKKLKVNASPNNPVAFDMRGQQKRFAFDCERLEDAVLEGEVWHDGNPVLRQHVLNAK 540 RTYKKKLKVNASPNNPVAFDMRGQQKRFAFDCERLEDAVLEGEVWHDGNPVLRQHVLNAK Sbjct: 481 RTYKKKLKVNASPNNPVAFDMRGQQKRFAFDCERLEDAVLEGEVWHDGNPVLRQHVLNAK 540 Query: 541 RHPTNYDAIAIRKVTKDSSKKIDAAVCAVLAFGARQDYLMSKKARSGRVVMVR 593 RHPTNYDAIAIRKVTKDSSKKIDAAVCAVLAFGARQDYLMSKKARSGRVVMVR Sbjct: 541 RHPTNYDAIAIRKVTKDSSKKIDAAVCAVLAFGARQDYLMSKKARSGRVVMVR 593 >gi|17795|lcl|protein:vir:2426 Length: 595 # NCBI annotation: gp13 # Family: family:all:1551 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046828;genbank:gi:9630396;genbank:GeneID: 1261617 Length = 595 Score = 1122 bits (2903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 541/595 (90%), Positives = 562/595 (94%), Gaps = 2/595 (0%) Query: 1 MSLNNHHPELAPSPPHIIGPSWQKTVDGEWYLPE--KTLGWGVLKWLSEYVNTPGGHDDP 58 MSL+NHHPELAPSPPHIIGPSWQKTVDG+W+LP+ TLGWGVLKWLSEYVNTPGGHDDP Sbjct: 1 MSLDNHHPELAPSPPHIIGPSWQKTVDGDWHLPDPKMTLGWGVLKWLSEYVNTPGGHDDP 60 Query: 59 NRLATLIALSEAGLLDNENMFIPTDEQVRLVLWWYAVDDQGQYIYREGVIRRLKGWGKDP 118 NRL LI+LSEAGLL+NENMFIPTDEQVRLVLWWYAVD++GQY+YREGVIRRLKGWGKDP Sbjct: 61 NRLKVLISLSEAGLLENENMFIPTDEQVRLVLWWYAVDEKGQYVYREGVIRRLKGWGKDP 120 Query: 119 FTAALCLAELCGPVAFSHFDADGNPVGKPRSAAWITVAAVSQDQTKNTFSLFPVMISKKL 178 FTAALCLAELCGPVAFSHFD G +GKPR AAWITVAAVSQDQTKNTFSLFPVMISKKL Sbjct: 121 FTAALCLAELCGPVAFSHFDETGQAIGKPRPAAWITVAAVSQDQTKNTFSLFPVMISKKL 180 Query: 179 KAEYGLDVNRFIIYSAAGGRIEAATSSPASMEGNRPTFVVQNETQWWGQGPDGKVNEGHA 238 K EYGLDVNRFIIYSAAGGRIEAATSSPASMEGNRPTFVVQNETQWWGQGPDGK NEGHA Sbjct: 181 KTEYGLDVNRFIIYSAAGGRIEAATSSPASMEGNRPTFVVQNETQWWGQGPDGKANEGHA 240 Query: 239 MAEVIEGNMTKVEGSRTLSICNAHIPGTETVAEKAWDEYQKVQAGDSVDTGMMYDALEAP 298 MAEVIEGNMTKVEGSRTLSICNAHIPGTETVAEKA+ E+Q VQ+G SVDTGMMYDALEAP Sbjct: 241 MAEVIEGNMTKVEGSRTLSICNAHIPGTETVAEKAYVEWQDVQSGKSVDTGMMYDALEAP 300 Query: 299 ADTPVSEIPPQKEDPEGFEKGIEKLREGLLIARGDSTWLPIDDIIKSILSTKNPITESRR 358 ADTP+SEIP +KE+P+GF +GIEKLREGLLIARGDSTWLPIDDIIKSILSTKN ITESRR Sbjct: 301 ADTPISEIPSEKENPDGFREGIEKLREGLLIARGDSTWLPIDDIIKSILSTKNSITESRR 360 Query: 359 KFLNQVNAAEDSWLSPQEWNRCQVDLAKYLDKHGREFAPLQRGDRITLGFDGSKSNDWTA 418 KFLNQVNAAEDSWLSPQEWNRC D KYLDK G E APL RG +ITLGFDGSKSNDWTA Sbjct: 361 KFLNQVNAAEDSWLSPQEWNRCFADPDKYLDKMGFELAPLDRGQKITLGFDGSKSNDWTA 420 Query: 419 LVGCRVSDGLLFVIDIWDPQKYGGEVPREDVDAKVHSAFAHYDVVAFRADVKEFEAYVDQ 478 LVGCRVSDGLLFVIDIWDPQKYGGEVPRE VDA VHSAF+ YDVVAFRADVKEFEAYVD Sbjct: 421 LVGCRVSDGLLFVIDIWDPQKYGGEVPREFVDAAVHSAFSRYDVVAFRADVKEFEAYVDS 480 Query: 479 WGRTYKKKLKVNASPNNPVAFDMRGQQKRFAFDCERLEDAVLEGEVWHDGNPVLRQHVLN 538 WGRTYKKKLKVNASPNNPVAFDMRGQQKRFAFDCERLEDAVLEGEVWHDGNPVLRQHVLN Sbjct: 481 WGRTYKKKLKVNASPNNPVAFDMRGQQKRFAFDCERLEDAVLEGEVWHDGNPVLRQHVLN 540 Query: 539 AKRHPTNYDAIAIRKVTKDSSKKIDAAVCAVLAFGARQDYLMSKKARSGRVVMVR 593 AKRHPT YDAIAIRKVTKDSSKKIDAAVCAVLAFGARQDYLMSKKAR+GRVV VR Sbjct: 541 AKRHPTTYDAIAIRKVTKDSSKKIDAAVCAVLAFGARQDYLMSKKARTGRVVAVR 595 >gi|9490|lcl|protein:vir:104081 Length: 594 # NCBI annotation: gp13 # Family: family:all:1551 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655592;genbank:gi:109392463;genbank:GeneI D:4156949 Length = 594 Score = 1114 bits (2882), Expect = 0.0, Method: Compositional matrix adjust. Identities = 537/594 (90%), Positives = 557/594 (93%), Gaps = 1/594 (0%) Query: 1 MSLNNHHPELAPSPPHIIGPSWQKTVDGEWYLPEKTLGWGVLKWLSEYVNTPGGHDDPNR 60 MSLNNH+PELAPSPPHIIGP+WQKT DG W+LPEKTLGWGVL WLSEYVNTPGGHDDPNR Sbjct: 1 MSLNNHYPELAPSPPHIIGPTWQKTTDGAWHLPEKTLGWGVLAWLSEYVNTPGGHDDPNR 60 Query: 61 LATLIALSEAGLLDNENMFIPTDEQVRLVLWWYAVDDQGQYIYREGVIRRLKGWGKDPFT 120 L LI LSEAG+ NENMFIPTDEQVRLVLWWYAVDD+GQYIYREGVIRRLKGWGKDPFT Sbjct: 61 LRFLIELSEAGIPFNENMFIPTDEQVRLVLWWYAVDDKGQYIYREGVIRRLKGWGKDPFT 120 Query: 121 AALCLAELCGPVAFSHFDADGNPVGKPRSAAWITVAAVSQDQTKNTFSLFPVMISKKLKA 180 AALCLAELCGPVAFSHFDADGNPVGK R+A WITVAAVSQDQTKNTFSLFPVMISKKLKA Sbjct: 121 AALCLAELCGPVAFSHFDADGNPVGKRRNAPWITVAAVSQDQTKNTFSLFPVMISKKLKA 180 Query: 181 EYGLDVNRFIIYSAAG-GRIEAATSSPASMEGNRPTFVVQNETQWWGQGPDGKVNEGHAM 239 EY LDVNRFIIYS G GRIEAATSSPA+MEGNRPTFVVQNETQWWGQGPDGKVNEGHAM Sbjct: 181 EYNLDVNRFIIYSDGGAGRIEAATSSPAAMEGNRPTFVVQNETQWWGQGPDGKVNEGHAM 240 Query: 240 AEVIEGNMTKVEGSRTLSICNAHIPGTETVAEKAWDEYQKVQAGDSVDTGMMYDALEAPA 299 AEVIEGNMTKVEGSRTLSICNAHIPGTETV EK+++ + + SVDTG++YDALEAPA Sbjct: 241 AEVIEGNMTKVEGSRTLSICNAHIPGTETVGEKSYNNWLDIATDKSVDTGLLYDALEAPA 300 Query: 300 DTPVSEIPPQKEDPEGFEKGIEKLREGLLIARGDSTWLPIDDIIKSILSTKNPITESRRK 359 DTP+SEIP QKEDPEGFE+GIEKLREG+LIARGDSTWLPIDDIIKSILSTKN ITESRRK Sbjct: 301 DTPISEIPSQKEDPEGFERGIEKLREGVLIARGDSTWLPIDDIIKSILSTKNSITESRRK 360 Query: 360 FLNQVNAAEDSWLSPQEWNRCQVDLAKYLDKHGREFAPLQRGDRITLGFDGSKSNDWTAL 419 FLNQVNAAEDSWLSPQEWNRC D KYL++ G EF PLQRGDRITLGFDGSKSNDWTAL Sbjct: 361 FLNQVNAAEDSWLSPQEWNRCFADPEKYLERRGHEFVPLQRGDRITLGFDGSKSNDWTAL 420 Query: 420 VGCRVSDGLLFVIDIWDPQKYGGEVPREDVDAKVHSAFAHYDVVAFRADVKEFEAYVDQW 479 VGCRVSDGLLFVIDIWDPQKYGGEVPREDVDAKVHSAF HYDVVAFRADVKEFEAYVD W Sbjct: 421 VGCRVSDGLLFVIDIWDPQKYGGEVPREDVDAKVHSAFKHYDVVAFRADVKEFEAYVDSW 480 Query: 480 GRTYKKKLKVNASPNNPVAFDMRGQQKRFAFDCERLEDAVLEGEVWHDGNPVLRQHVLNA 539 GRTYKKKLKVNASPNNPVAFDMRGQQKRFAFDCERLEDAVLEGEVWHDGN VL QHV+NA Sbjct: 481 GRTYKKKLKVNASPNNPVAFDMRGQQKRFAFDCERLEDAVLEGEVWHDGNAVLSQHVMNA 540 Query: 540 KRHPTNYDAIAIRKVTKDSSKKIDAAVCAVLAFGARQDYLMSKKARSGRVVMVR 593 KRHPT YDAIAIRKVTKDSSKKIDAAVCAVLAFGARQDYLMSKKARSGRVV VR Sbjct: 541 KRHPTTYDAIAIRKVTKDSSKKIDAAVCAVLAFGARQDYLMSKKARSGRVVAVR 594 >gi|16473|lcl|protein:vir:7767 Length: 566 # NCBI annotation: gp13 # Family: family:all:1551 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817601;genbank:gi:29566031;genbank:GeneID :1259225 Length = 566 Score = 910 bits (2352), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/594 (72%), Positives = 494/594 (83%), Gaps = 29/594 (4%) Query: 1 MSLNNHHPELAPSPPHIIGPSWQKTVDGEWYLPEKTLGWGVLKWLSEYVNTPGGHDDPNR 60 MSL+NHHPELAPSPPH+IGP+W +TVDG WYLPEKTLGWGVL W + YV TPGG Sbjct: 1 MSLDNHHPELAPSPPHVIGPTWARTVDGGWYLPEKTLGWGVLNWWAAYVKTPGGE----- 55 Query: 61 LATLIALSEAGLLDNENMFIPTDEQVRLVLWWYAVDDQGQYIYREGVIRRLKGWGKDPFT 120 AG + F+PT EQ R LWWYAVDD G Y+YREG++RRLKGWGKDPF Sbjct: 56 --------HAG-----SPFMPTLEQARFTLWWYAVDDNGNYVYREGILRRLKGWGKDPFA 102 Query: 121 AALCLAELCGPVAFSHFDADGNPVGKPRSAAWITVAAVSQDQTKNTFSLFPVMISKKLKA 180 AAL LAELCGPVAFSHFDADGNPVGKPR AAWIT+AAVSQDQTKNTFSLFP+MISK+LK Sbjct: 103 AALSLAELCGPVAFSHFDADGNPVGKPRHAAWITIAAVSQDQTKNTFSLFPIMISKQLKE 162 Query: 181 EYGLDVNRFIIYSAAGGRIEAATSSPASMEGNRPTFVVQNETQWWGQGPDGKVNEGHAMA 240 +YGL VNRFIIYS AGGRIEAATSSPAS+EGNRPTFV++NETQWWG GP G++N+GHAM Sbjct: 163 DYGLLVNRFIIYSEAGGRIEAATSSPASVEGNRPTFVIENETQWWGAGPGGEINDGHAMH 222 Query: 241 EVIEGNMTKVEGSRTLSICNAHIPGTETVAEKAWDEYQKVQAGDSVDTGMMYDALEAPAD 300 IEGN+TK+ G+R L+ICNAHIPG +TVAEK WD YQ + +G +VDTGM+YDALEAPAD Sbjct: 223 GAIEGNLTKIPGARRLAICNAHIPGNDTVAEKDWDAYQDILSGKAVDTGMLYDALEAPAD 282 Query: 301 TPVSEIPPQKEDPEGFEKGIEKLREGLLIARGDSTWLPIDDIIKSILSTKNPITESRRKF 360 TPVSEIP Q+EDPEG++ GI+KLREG+ IARGDS WLP+D+I+ SIL KN ITESRRKF Sbjct: 283 TPVSEIPSQREDPEGYQLGIKKLREGIEIARGDSYWLPVDEILMSILDIKNSITESRRKF 342 Query: 361 LNQVNAAEDSWLSPQEWNRCQVDLAKYLDKHGREFAPLQRGDRITLGFDGSKSNDWTALV 420 LNQ+NA EDSW+SP EWNRCQ + PL +GDRITLGFDGSKSNDWTALV Sbjct: 343 LNQINAHEDSWISPNEWNRCQPSTIQ----------PLTKGDRITLGFDGSKSNDWTALV 392 Query: 421 GCRVSDGLLFVIDIWDPQKY-GGEVPREDVDAKVHSAFAHYDVVAFRADVKEFEAYVDQW 479 CRV DG+LF+I +W+P+ Y GEVPREDVDA V S FA YDVVAFRADVKEFEAYVDQW Sbjct: 393 ACRVDDGMLFLIKVWNPEDYESGEVPREDVDATVRSMFASYDVVAFRADVKEFEAYVDQW 452 Query: 480 GRTYKKKLKVNASPNNPVAFDMRGQQKRFAFDCERLEDAVLEGEVWHDGNPVLRQHVLNA 539 GR ++KK++VNA+P NP+AFDMRGQ KRFAFDCER DAV+E EV+HDGNPVL+QHV NA Sbjct: 453 GRDFRKKIQVNATPGNPIAFDMRGQTKRFAFDCERFLDAVIEQEVFHDGNPVLKQHVCNA 512 Query: 540 KRHPTNYDAIAIRKVTKDSSKKIDAAVCAVLAFGARQDYLMSKKARSGRVVMVR 593 +RHPT YDAIAIRK +KDS KKIDAAVCAVLAFGARQD+LMSK+ R+ R VM++ Sbjct: 513 RRHPTTYDAIAIRKASKDSGKKIDAAVCAVLAFGARQDFLMSKRNRTRRAVMIK 566 >gi|19787|lcl|protein:vir:2340 Length: 562 # NCBI annotation: gp10 # Family: family:all:1551 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075277;genbank:gi:12657864;genbank:GeneID :920069 Length = 562 Score = 825 bits (2130), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/590 (66%), Positives = 466/590 (78%), Gaps = 33/590 (5%) Query: 6 HHPE-LAPSPPHIIGPSWQKTVDGEWYLPEKTLGWGVLKWLSEYVNTPGGHDDPNRLATL 64 H+PE L P+P HI GP+W++ DG W+LPEKTLGW ++ WL EYVN+P G D P Sbjct: 4 HYPESLLPAPSHIQGPTWRQYEDGSWFLPEKTLGWQIISWLFEYVNSPAG-DGP------ 56 Query: 65 IALSEAGLLDNENMFIPTDEQVRLVLWWYAVDDQGQYIYREGVIRRLKGWGKDPFTAALC 124 F+PT EQ R + WWYAVDDQG+Y YREG +RR+KGWGKDP AL Sbjct: 57 --------------FVPTLEQARFIAWWYAVDDQGKYAYREGTLRRMKGWGKDPMIGALA 102 Query: 125 LAELCGPVAFSHFDADGNPVGKPRSAAWITVAAVSQDQTKNTFSLFPVMISKKLKAEYGL 184 LAELCGPVAFSHFD +GNPVGK R AAWIT+AAVSQDQTKNTFSLFP+M+SK+L++EYGL Sbjct: 103 LAELCGPVAFSHFDDNGNPVGKARHAAWITIAAVSQDQTKNTFSLFPIMVSKRLRSEYGL 162 Query: 185 DVNRFIIYSAAGGRIEAATSSPASMEGNRPTFVVQNETQWWGQGPDGKVNEGHAMAEVIE 244 VNRFIIYS GGR+EAAT+SPASMEGNRPTFVVQNETQWWG GP G+VN GH MAEVIE Sbjct: 163 SVNRFIIYSEIGGRLEAATASPASMEGNRPTFVVQNETQWWGVGPGGEVNGGHQMAEVIE 222 Query: 245 GNMTKVEGSRTLSICNAHIPGTETVAEKAWDEYQKVQAGDSVDTGMMYDALEAPADTPVS 304 GNMTKV G+RTLSICNAH PG +TVAE+++ + + AG+ +DTG++YDALEAPADTPVS Sbjct: 223 GNMTKVPGARTLSICNAHRPGDDTVAERSYQNWLDILAGEVIDTGILYDALEAPADTPVS 282 Query: 305 EIPPQKEDPEGFEKGIEKLREGLLIARGDSTWLPIDDIIKSILSTKNPITESRRKFLNQV 364 EIPP ED G+ G+ KL EGL +ARGDS WLP+DDI+ S+LS KN I ESRRKFLNQV Sbjct: 283 EIPPPSEDEPGYTAGVAKLLEGLGVARGDSIWLPLDDILMSVLSAKNDIIESRRKFLNQV 342 Query: 365 NAAEDSWLSPQEWNRCQVDLAKYLDKHGREFAPLQRGDRITLGFDGSKSNDWTALVGCRV 424 NA+EDSWL+P +W++C H PL +GD+ITLGFDGSKSNDWTALV CRV Sbjct: 343 NASEDSWLAPADWDKC----------HSTSLRPLTKGDKITLGFDGSKSNDWTALVACRV 392 Query: 425 SDGLLFVIDIWDPQKY-GGEVPREDVDAKVHSAFAHYDVVAFRADVKEFEAYVDQWGRTY 483 DG +F+ID W+P+ Y GEVP+EDVDA V S Y+VVAFRADVKEFEAYVDQWG+ + Sbjct: 393 EDGAVFLIDYWNPENYPSGEVPKEDVDAVVRSMKDKYEVVAFRADVKEFEAYVDQWGQLF 452 Query: 484 KKKLKVNASPNNPVAFDMRGQQKRFAFDCERLEDAVLEGEVWHDGNPVLRQHVLNAKRHP 543 ++ +KVNASP NPVAFDMRGQ KRFA DCER DAVLE E+ HD NPV++ H+ NA RHP Sbjct: 453 RRTIKVNASPGNPVAFDMRGQTKRFALDCERFADAVLEQELVHDNNPVMKAHITNAHRHP 512 Query: 544 TNYDAIAIRKVTKDSSKKIDAAVCAVLAFGARQDYLMSKKARSGRVVMVR 593 T YDAI+IRK +K S +KIDAAVC+VLAFGARQDYLMSKK RSG+V++++ Sbjct: 513 TIYDAISIRKPSKASKRKIDAAVCSVLAFGARQDYLMSKKNRSGKVMVIQ 562 >gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491581;genbank:gi:157786404;genbank:Ge neID:5625646 Length = 562 Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/579 (65%), Positives = 449/579 (77%), Gaps = 33/579 (5%) Query: 6 HHPE-LAPSPPHIIGPSWQKTVDGEWYLPEKTLGWGVLKWLSEYVNTPGGHDDPNRLATL 64 H+PE L P+P HI GP+W++ DG W+LPEKTLGW ++ WL EYVN+P G D P Sbjct: 4 HYPESLLPAPSHIQGPTWRQYEDGSWFLPEKTLGWQIISWLFEYVNSPAG-DGP------ 56 Query: 65 IALSEAGLLDNENMFIPTDEQVRLVLWWYAVDDQGQYIYREGVIRRLKGWGKDPFTAALC 124 F+PT EQ R + WWYAVDDQG+Y YREG +RR+KGWGKDP AL Sbjct: 57 --------------FVPTLEQARFIAWWYAVDDQGKYAYREGTLRRMKGWGKDPMIGALA 102 Query: 125 LAELCGPVAFSHFDADGNPVGKPRSAAWITVAAVSQDQTKNTFSLFPVMISKKLKAEYGL 184 LAELCGPVAFSHFD +GNPVGKPR AAW+TVAAVSQ QT NTF LFP+M+SKKLK EYGL Sbjct: 103 LAELCGPVAFSHFDDNGNPVGKPRHAAWVTVAAVSQQQTVNTFGLFPIMVSKKLKTEYGL 162 Query: 185 DVNRFIIYSAAGGRIEAATSSPASMEGNRPTFVVQNETQWWGQGPDGKVNEGHAMAEVIE 244 VNRFIIYS GGR+EAAT+SPASMEGNRPTFVVQNETQWWG GP G+VN+GH MAEVIE Sbjct: 163 SVNRFIIYSEIGGRLEAATASPASMEGNRPTFVVQNETQWWGVGPGGEVNDGHQMAEVIE 222 Query: 245 GNMTKVEGSRTLSICNAHIPGTETVAEKAWDEYQKVQAGDSVDTGMMYDALEAPADTPVS 304 GNMTKV G+RTLSICNAH PG +TVAE ++ + + AGD++DTG++YDALEAPADTPVS Sbjct: 223 GNMTKVPGARTLSICNAHRPGDDTVAEMSYLNWLDILAGDAIDTGVLYDALEAPADTPVS 282 Query: 305 EIPPQKEDPEGFEKGIEKLREGLLIARGDSTWLPIDDIIKSILSTKNPITESRRKFLNQV 364 EIP +DPEG+E G+ +L +GL IARGDS WLP+DDI+ S+L+ KN + ESRRKFLNQV Sbjct: 283 EIPFPSDDPEGYEAGVAQLMKGLEIARGDSIWLPLDDILMSVLTAKNDVIESRRKFLNQV 342 Query: 365 NAAEDSWLSPQEWNRCQVDLAKYLDKHGREFAPLQRGDRITLGFDGSKSNDWTALVGCRV 424 NA E+SW++P EW+R H PL++G+RITLGFDGS SND TAL CRV Sbjct: 343 NATEESWIAPSEWDR----------NHDINLPPLRKGERITLGFDGSLSNDHTALTACRV 392 Query: 425 SDGLLFVIDIWDPQKY-GGEVPREDVDAKVHSAFAHYDVVAFRADVKEFEAYVDQWGRTY 483 DG LF++ +W P+KY G +VPR+DVDA V S F YDVV RADVKEFE VD WG+ + Sbjct: 393 EDGALFLVKVWVPEKYEGHKVPRQDVDAYVRSMFEKYDVVGMRADVKEFEQSVDAWGQDF 452 Query: 484 KKKLKVNASPNNPVAFDMRGQQKRFAFDCERLEDAVLEGEVWHDGNPVLRQHVLNAKRHP 543 ++KL++NASP NPVAFDMRGQQKRFA DCER DAVL GEV HD NPVL+ H+ NA +HP Sbjct: 453 RRKLRINASPGNPVAFDMRGQQKRFALDCERFRDAVLAGEVKHDNNPVLKAHITNAHQHP 512 Query: 544 TNYDAIAIRKVTKDSSKKIDAAVCAVLAFGARQDYLMSK 582 T YDAI+IRK K+S +KIDAAV AVLA+G+RQD+L+SK Sbjct: 513 TIYDAISIRKPGKESKRKIDAAVTAVLAWGSRQDFLLSK 551 >gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491662;genbank:gi:157786486;genbank:Ge neID:5625706 Length = 903 Score = 593 bits (1530), Expect = e-171, Method: Compositional matrix adjust. Identities = 285/431 (66%), Positives = 344/431 (79%), Gaps = 11/431 (2%) Query: 153 ITVAAVSQDQTKNTFSLFPVMISKKLKAEYGLDVNRFIIYSAAGGRIEAATSSPASMEGN 212 ++ + + TKNTFSLFP+M+SKKLK EYGL VNRFIIYS GGR+EAAT+SPASMEGN Sbjct: 472 VSRSRILTHNTKNTFSLFPIMVSKKLKTEYGLSVNRFIIYSEIGGRLEAATASPASMEGN 531 Query: 213 RPTFVVQNETQWWGQGPDGKVNEGHAMAEVIEGNMTKVEGSRTLSICNAHIPGTETVAEK 272 RPTFVVQNETQWWG GP G+VN+GH MAEVIEGNMTKV+G+RTLSICNAH PG +TVAE Sbjct: 532 RPTFVVQNETQWWGVGPGGEVNDGHQMAEVIEGNMTKVDGARTLSICNAHRPGDDTVAEM 591 Query: 273 AWDEYQKVQAGDSVDTGMMYDALEAPADTPVSEIPPQKEDPEGFEKGIEKLREGLLIARG 332 ++ + + AGD++DTG++YDALEAPADTPVSEIP +DPEG+E G+ +L +GL IARG Sbjct: 592 SYLNWLDILAGDAIDTGVLYDALEAPADTPVSEIPFPSDDPEGYEAGVAQLMKGLEIARG 651 Query: 333 DSTWLPIDDIIKSILSTKNPITESRRKFLNQVNAAEDSWLSPQEWNRCQVDLAKYLDKHG 392 DS WLP+DDI+ S+L+ KN + ESRRKFLNQVNA E+SW++P EW+R H Sbjct: 652 DSIWLPLDDILMSVLTAKNDVIESRRKFLNQVNATEESWIAPSEWDR----------NHD 701 Query: 393 REFAPLQRGDRITLGFDGSKSNDWTALVGCRVSDGLLFVIDIWDPQKY-GGEVPREDVDA 451 PL++G+RITLGFDGS SND TAL CRV DG LF++ +W P+KY G +VPR+DVDA Sbjct: 702 INLPPLRKGERITLGFDGSLSNDHTALTACRVEDGALFLVKVWVPEKYEGHKVPRQDVDA 761 Query: 452 KVHSAFAHYDVVAFRADVKEFEAYVDQWGRTYKKKLKVNASPNNPVAFDMRGQQKRFAFD 511 V S F YDVV RADVKEFE VD WG+ +++KLK+NASP NPVAFDMRGQQKRFA D Sbjct: 762 YVRSMFEKYDVVGMRADVKEFEQSVDAWGQDFRRKLKINASPGNPVAFDMRGQQKRFALD 821 Query: 512 CERLEDAVLEGEVWHDGNPVLRQHVLNAKRHPTNYDAIAIRKVTKDSSKKIDAAVCAVLA 571 CER DAVL GEV HD NPVL+ H+ NA +HPT YDAI+IRK K+S +KIDAAV AVLA Sbjct: 822 CERFRDAVLAGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDAAVTAVLA 881 Query: 572 FGARQDYLMSK 582 +G+RQD+L+SK Sbjct: 882 WGSRQDFLLSK 892 Score = 203 bits (517), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 95/158 (60%), Positives = 112/158 (70%), Gaps = 22/158 (13%) Query: 6 HHPE-LAPSPPHIIGPSWQKTVDGEWYLPEKTLGWGVLKWLSEYVNTPGGHDDPNRLATL 64 H+PE L P+P HI GP+W++ DG W+LPEKTLGW ++ WL EYVN+P G D P Sbjct: 4 HYPESLLPAPSHIQGPTWRQYEDGSWFLPEKTLGWQIISWLFEYVNSPAG-DGP------ 56 Query: 65 IALSEAGLLDNENMFIPTDEQVRLVLWWYAVDDQGQYIYREGVIRRLKGWGKDPFTAALC 124 F+PT EQ R + WWYAVDDQG+Y YREG +RR+KGWGKDP AL Sbjct: 57 --------------FVPTLEQARFIAWWYAVDDQGKYAYREGTLRRMKGWGKDPMIGALA 102 Query: 125 LAELCGPVAFSHFDADGNPVGKPRSAAWITVAAVSQDQ 162 LAELCGPVAFSHFD +GNPVGK R AAW+T+AAVSQDQ Sbjct: 103 LAELCGPVAFSHFDDNGNPVGKTRHAAWVTIAAVSQDQ 140 >gi|6388|lcl|protein:vir:98470 Length: 536 # NCBI annotation: hypothetical protein # Family: family:all:1551 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958275;genbank:gi:41057249;genbank:GeneID :2732854 Length = 536 Score = 258 bits (659), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 189/548 (34%), Positives = 271/548 (49%), Gaps = 70/548 (12%) Query: 74 DNENMFIPTDEQVRLVLWWYAVDD-QGQYIYREGVIRRLKGWGKDPFTAALCLAELCGPV 132 D+ FIPT EQ +L +Y + G+ + G++ R +GWGK PF A+ LAE C V Sbjct: 11 DDGEPFIPTQEQAEFLLRFYELHPVTGRRVIHRGLLSRPRGWGKSPFVGAIALAEACADV 70 Query: 133 AFSHFDADGNPVGKPRSAA---WITVAAVSQDQTKNT-FSLFPVMISKKLKAEYGLDVNR 188 +DA G P+G+P + + +AAV++ QT NT L + L +YGLDV Sbjct: 71 VADGWDAYGEPIGRPWHSVRTPLVRIAAVTEAQTDNTWIPLLEMARGGSLSTDYGLDVLD 130 Query: 189 FIIYSAAGGRIEAATSSPASMEGNRPTFVVQNETQWWGQGPDGKVNEGHAMAEVIEGNMT 248 +IY G I TSS +S++G+ F ++T+ W + N G +A+ + N Sbjct: 131 TVIYLPR-GEISPITSSASSVKGDPACFASLDQTEEWRES-----NGGIRLAKTMRFNAA 184 Query: 249 KVEGSRTLSICNAHIPGTETVAEKAWDEYQKVQAGDSVDTGMMYDALEAPADTPVSEIPP 308 K+ GS + NA PG +VAE + +YQ + G S G++ D EAP DT +S+ Sbjct: 185 KLGGS-IIETPNAFTPGEGSVAENSAADYQAIIDGRSRARGILVDHREAPGDTDMSD--- 240 Query: 309 QKEDPEGFEKGIEKLREGLLIARGDST----------------WLPIDDIIKSILSTKNP 352 + L GL A GDS+ W PI+ + T N Sbjct: 241 -----------EQSLVAGLRYAYGDSSDHPDGCVLHDPPCGPGWSPIERLTGEFWDTSND 289 Query: 353 ITESRRKFLNQVNAAEDSWLSPQEWNRCQVDLAKYLDKHGREFAPLQRGDRITLGFDGSK 412 + R FLNQ+ A D+WLS E R DL K +Q GDRI LGFDGS+ Sbjct: 290 PQDLRADFLNQITHASDAWLSQPE-VRASSDLGKV----------VQPGDRIVLGFDGSR 338 Query: 413 S-----NDWTALVGCRVSDGLLFVIDIWD--PQKYGG--------EVPREDVDAKVHSAF 457 D TAL+GCR+SDG LF + +W+ P+ G +VP +V A V AF Sbjct: 339 KRSRGVTDATALIGCRLSDGHLFTLGVWEQPPRLELGPDGRPVEWQVPVVEVLAAVAEAF 398 Query: 458 AHYDVVAFRADVKEFEAYVDQWGRTYKKKLKVNASPNNPVAFDMRGQQKRFAFDC-ERLE 516 A YDVV AD ++E++V W + +L+V + N+P+ + M G + E+ Sbjct: 399 ATYDVVGMYADPAKWESHVADWEAAFGPRLQVKVTRNHPIEWWMTGGRSTLIVRALEKFH 458 Query: 517 DAVLEGEVWHDGNPVLRQHVLNAKRHPTNYDAIAIRKVTKDSSKKIDAAVCAVLAFGARQ 576 A+ E E+ HDG+ L +H+LN++R T I I K DS KIDAAV AVLA+ R Sbjct: 459 TALTECELTHDGSSALVRHLLNSRRRKTR-SGIQIMKENPDSPNKIDAAVAAVLAWQCRL 517 Query: 577 DYLMSKKA 584 D + + A Sbjct: 518 DAIAAGLA 525 >gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813693;swissprot:trembl:q859c4;genbank:gi :29366753;interpro:IPR005021;uniprot:Q859C4;genbank:Gene ID:1258893 Length = 527 Score = 81.3 bits (199), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 72/216 (33%), Positives = 95/216 (43%), Gaps = 30/216 (13%) Query: 361 LNQVNAAEDSWLSPQEWNRCQVDLAKYLDKHGREFAPLQRGDRITLGFDGSKSNDWTALV 420 L+Q +WL W+ D + PL+ GD + GFDGS D TALV Sbjct: 293 LSQFVRGASTWLPHGLWDSLAAD----------DDDPLEPGDEVVCGFDGSWKGDSTALV 342 Query: 421 GCRVSDGLLFVIDIWD--PQKYGGEVPREDVDAKVHSAFAHYDVVAFRADVKEFEAYVDQ 478 CRV D +FV+ W+ VP DV +HSA Y V AD +E +D Sbjct: 343 ACRVRDLRVFVLGHWEAPADDIHWRVPMADVREALHSALDTYRVRNLVADPYRWEETLDN 402 Query: 479 WGRTYKKKLKVNASPNNPVAFDMRGQQKRFAFDCERLEDAVLEGEVWHDGNPVLRQHVLN 538 + V A P N +A R + + DA +G + HDGNP L +H+ N Sbjct: 403 ---LEAEGFPVEAFPTNSLA--------RMVPATQAVYDACRDGRLSHDGNPALARHIGN 451 Query: 539 AKRHPTNYDAIAIRKVTKD---SSKKIDAAVCAVLA 571 A DA R +TK+ S +KID AV VLA Sbjct: 452 AV---LKEDARGAR-ITKEFGASRRKIDLAVAMVLA 483 >gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047924;swissprot:trembl:q9t214;genbank:gi :9631142;uniprot:Q9T214;genbank:GeneID:2715903 Length = 519 Score = 80.9 bits (198), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 82/177 (46%), Gaps = 14/177 (7%) Query: 397 PLQRGDRITLGFDGSKSNDWTALVGCRVSDGLLFVIDIWDPQKYGGE--VPREDVDAKVH 454 PL+ GD + LGFDGS D TALV CR+ D +FV+ W+ VP DV ++H Sbjct: 315 PLEPGDEVVLGFDGSWKGDSTALVACRIRDLKVFVLGHWEAPADDAHWRVPMADVREELH 374 Query: 455 SAFAHYDVVAFRADVKEFEAYVDQWGRTYKKKLKVNASPNNPVAFDMRGQQKRFAFDCER 514 +A Y V AD +E +D V A P N +A R + Sbjct: 375 TALDVYRVRNLVADPYRWEETLDN---LEADGFPVEAFPTNSLA--------RMVPATQA 423 Query: 515 LEDAVLEGEVWHDGNPVLRQHVLNAKRHPTNYDAIAIRKVTKDSSKKIDAAVCAVLA 571 + DA +G + HDGNP L +H+ NA A I K S +KID AV VLA Sbjct: 424 VYDACRDGRLSHDGNPALGRHIGNAVLKEDARGA-RITKEHASSRRKIDLAVAMVLA 479 >gi|18273|lcl|protein:vir:7986 Length: 545 # NCBI annotation: gp2 # Family: family:all:1551 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817340;genbank:gi:29565768;genbank:GeneID :1259002 Length = 545 Score = 64.3 bits (155), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 126/535 (23%), Positives = 200/535 (37%), Gaps = 92/535 (17%) Query: 83 DEQVRLVLWWYAVDDQGQYIY------REGVIRRLKGWGKDPFTAALCLAELC--GPVAF 134 DE+ LV Y + +G + R GV R KG K F A +C EL PV Sbjct: 44 DEKRALVYRLYELYPRGHRLAGRRRFERAGVELR-KGVAKTEFAAWICGVELHPEAPVRC 102 Query: 135 SHFDADGNPVGKPRSAAWITVAAVSQDQTKN-TFSLFPVMISKKLKAE-YGLDVNRFIIY 192 FDA GNPVG+P + I + AV+++Q F + ++ A+ + + R + Sbjct: 103 DGFDAAGNPVGRPVRSPVIPMMAVTEEQVSELAFGVLKYILENGPDADLFDISKERIVRL 162 Query: 193 SAAGGR---IEAATSSPASMEGNRPTFVVQNETQWWGQGPDGKVNEGHAMA-EVIEGNMT 248 S +GG A +++P S +G R TF +E P H A E + NM Sbjct: 163 SPSGGEDGFAVAVSNAPGSRDGARTTFQHFDE-------PHRLFMPRHRDAHETMLQNMP 215 Query: 249 K--VEGSRTLSICNAHIPGTETVAEKAWDEYQKVQAGDSVDTGMMYDALEAPADTPVSEI 306 K +E TL A PG ++ E E + + G Sbjct: 216 KRPMEDPWTLYTSTAGQPGQGSIEEDVLAEAESIARG----------------------- 252 Query: 307 PPQKEDPEGFEKGIEKLREGLLIARGDSTWLPIDDIIKSILSTKNPITE-SRRKFLNQVN 365 +++DP F R D + ++ + ++ PI E +F Sbjct: 253 --ERQDPSLF-----FFRRWAGDEHDDLS--TVEKRVAAVADATGPIGEWGPGQFERIAK 303 Query: 366 AAEDSWLSPQEWNRCQVDLAKYLDKHGREFAPLQRGDR-------ITLGFDGSKSNDWTA 418 + + + W R ++ + + L + D +T GFDGS+ D TA Sbjct: 304 DYDRTGIDRAYWERVYLNRWRKSGSQAFDMTRLVQCDETVPDGAFVTAGFDGSRWRDATA 363 Query: 419 LVGCRVSDGLLFVIDIWD-PQKYGG-EVPREDVDAKVHSAFAHYDVVAFRADVKEFEAYV 476 +V ++ G ++ W+ P+ EVP +V A V + ++V + Y Sbjct: 364 VVVTEIATGRQMLLGCWERPENVEEWEVPEHEVTALVVDMMSRFEV---------WRMYC 414 Query: 477 DQWGRTYKKKLKVNASPNNPV--AFDMRGQQKRFA------FDCERLEDAVLEGEVWHDG 528 D WG P+ V A G +R A D DAVL VW Sbjct: 415 DPWGWDSTIAAWAGRFPDRVVEWAVGGGGSLRRVAAATQGYADALATGDAVLAANVW--- 471 Query: 529 NPVLRQHVLNAKRHP------TNYDAIAIRKVTKDSSKKIDAAVCAVLAFGARQD 577 P +H+ +A R T ++K + K DAA+ +L++ A D Sbjct: 472 RPKFVEHMGHAGRRELKLVDDTGQPLWVMQKQDGRLADKFDAAMAGMLSWEACVD 526 >gi|9695|lcl|protein:vir:102601 Length: 545 # NCBI annotation: gp2 # Family: family:all:1551 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654998;genbank:gi:109392188;genbank:GeneI D:4157223 Length = 545 Score = 63.2 bits (152), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 122/532 (22%), Positives = 200/532 (37%), Gaps = 86/532 (16%) Query: 83 DEQVRLVLWWYAVDDQGQYIY------REGVIRRLKGWGKDPFTAALCLAELC--GPVAF 134 DE+ LV Y + +G ++ R GV R KG K F A +C EL PV Sbjct: 44 DEKRALVYRLYELYPRGHHLAGRRRFERAGVELR-KGVAKTEFAAWICGVELHPEAPVRC 102 Query: 135 SHFDADGNPVGKPRSAAWITVAAVSQDQTKN-TFSLFPVMISKKLKAE-YGLDVNRFIIY 192 FDA GNPVG+P + I + AV+++Q F + ++ + + + R + Sbjct: 103 DGFDAAGNPVGRPVRSPVIPMMAVTEEQVSELAFGVLKYILENGPDVDLFDISKERIVRL 162 Query: 193 SAAGGR---IEAATSSPASMEGNRPTFVVQNETQWWGQGPDGKVNEGHAMA-EVIEGNMT 248 S +GG A +++P S +G R TF +E P H A E + NM Sbjct: 163 SPSGGEDGFAVAVSNAPGSRDGARTTFQHFDE-------PHRLFMPRHRDAHETMLQNMP 215 Query: 249 K--VEGSRTLSICNAHIPGTETVAEKAWDEYQKVQAGDSVDTGMMYDALEAPADTPVSEI 306 K +E TL A PG ++ E E + + G Sbjct: 216 KRPMEDPWTLYTSTAGQPGQGSIEEDVLAEAESIARG----------------------- 252 Query: 307 PPQKEDPEGFEKGIEKLREGLLIARGDSTWLPIDDIIKSILSTKNPITE-SRRKFLNQVN 365 +++DP F R D + ++ + ++ PI E +F Sbjct: 253 --ERQDPSLF-----FFRRWAGDEHDDLS--TVEKRVAAVADATGPIGEWGPGQFERIAK 303 Query: 366 AAEDSWLSPQEWNRCQVDLAKYLDKHGREFAPLQRGDR-------ITLGFDGSKSNDWTA 418 + + + W R ++ + + L + D +T GFDGS+ D TA Sbjct: 304 DYDRTGIDRAYWERVYLNRWRKSGSQAFDMTRLVQCDETVPDGAFVTAGFDGSRWRDATA 363 Query: 419 LVGCRVSDGLLFVIDIWD-PQKYGG-EVPREDVDAKVHSAFAHYDVVAFRADVKEFEAYV 476 +V ++ G ++ W+ P+ EVP +V A V + ++V + Y Sbjct: 364 VVVTEIATGRQMLLGCWERPENVEEWEVPEHEVTALVVDMMSRFEV---------WRMYC 414 Query: 477 DQWGRTYKKKLKVNASPNNPV--AFDMRGQQKRFAFDCERLEDAVLEGEVWHDGN---PV 531 D WG P+ V A G +R A + DA+ G+ N P Sbjct: 415 DPWGWDSTIAAWAGRFPDRVVEWAVGGGGSLRRVAAATQGYADALATGDAALAANVWRPK 474 Query: 532 LRQHVLNAKRHP------TNYDAIAIRKVTKDSSKKIDAAVCAVLAFGARQD 577 +H+ +A R T ++K + K DAA+ +L++ A D Sbjct: 475 FVEHMGHAGRRELKLVDDTGQPLWVMQKQDGRLADKFDAAMAGMLSWEACVD 526 >gi|8440|lcl|protein:vir:105818 Length: 545 # NCBI annotation: gp2 # Family: family:all:1551 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655763;genbank:gi:109522086;genbank:GeneI D:4157626 Length = 545 Score = 63.2 bits (152), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 122/532 (22%), Positives = 200/532 (37%), Gaps = 86/532 (16%) Query: 83 DEQVRLVLWWYAVDDQGQYIY------REGVIRRLKGWGKDPFTAALCLAELC--GPVAF 134 DE+ LV Y + +G ++ R GV R KG K F A +C EL PV Sbjct: 44 DEKRALVYRLYELYPRGHHLAGRRRFERAGVELR-KGVAKTEFAAWICGVELHPEAPVRC 102 Query: 135 SHFDADGNPVGKPRSAAWITVAAVSQDQTKN-TFSLFPVMISKKLKAE-YGLDVNRFIIY 192 FDA GNPVG+P + I + AV+++Q F + ++ + + + R + Sbjct: 103 DGFDAAGNPVGRPVRSPVIPMMAVTEEQVSELAFGVLKYILENGPDVDLFDISKERIVRL 162 Query: 193 SAAGGR---IEAATSSPASMEGNRPTFVVQNETQWWGQGPDGKVNEGHAMA-EVIEGNMT 248 S +GG A +++P S +G R TF +E P H A E + NM Sbjct: 163 SPSGGEDGFAVAVSNAPGSRDGARTTFQHFDE-------PHRLFMPRHRDAHETMLQNMP 215 Query: 249 K--VEGSRTLSICNAHIPGTETVAEKAWDEYQKVQAGDSVDTGMMYDALEAPADTPVSEI 306 K +E TL A PG ++ E E + + G Sbjct: 216 KRPMEDPWTLYTSTAGQPGQGSIEEDVLAEAESIARG----------------------- 252 Query: 307 PPQKEDPEGFEKGIEKLREGLLIARGDSTWLPIDDIIKSILSTKNPITE-SRRKFLNQVN 365 +++DP F R D + ++ + ++ PI E +F Sbjct: 253 --ERQDPSLF-----FFRRWAGDEHDDLS--TVEKRVAAVADATGPIGEWGPGQFERIAK 303 Query: 366 AAEDSWLSPQEWNRCQVDLAKYLDKHGREFAPLQRGDR-------ITLGFDGSKSNDWTA 418 + + + W R ++ + + L + D +T GFDGS+ D TA Sbjct: 304 DYDRTGIDRAYWERVYLNRWRKSGSQAFDMTRLVQCDETVPDGAFVTAGFDGSRWRDATA 363 Query: 419 LVGCRVSDGLLFVIDIWD-PQKYGG-EVPREDVDAKVHSAFAHYDVVAFRADVKEFEAYV 476 +V ++ G ++ W+ P+ EVP +V A V + ++V + Y Sbjct: 364 VVVTEIATGRQMLLGCWERPENVEEWEVPEHEVTALVVDMMSRFEV---------WRMYC 414 Query: 477 DQWGRTYKKKLKVNASPNNPV--AFDMRGQQKRFAFDCERLEDAVLEGEVWHDGN---PV 531 D WG P+ V A G +R A + DA+ G+ N P Sbjct: 415 DPWGWDSTIAAWAGRFPDRVVEWAVGGGGSLRRVAAATQGYADALATGDAALAANVWRPK 474 Query: 532 LRQHVLNAKRHP------TNYDAIAIRKVTKDSSKKIDAAVCAVLAFGARQD 577 +H+ +A R T ++K + K DAA+ +L++ A D Sbjct: 475 FVEHMGHAGRRELKLVDDTGQPLWVMQKQDGRLADKFDAAMAGMLSWEACVD 526 >gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: putative terminase (large subunit) # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536358;genbank:gi:17975163;genbank:GeneID :929161 Length = 570 Score = 39.3 bits (90), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 513 ERLEDAVLEGEVWHDGNPVLRQHVLN--AKRHPTNYDAIAIRKVTKDSSKKIDAAVCAVL 570 + LE A+ G HDGNP++ V N K P N D +R + + + KID AV ++ Sbjct: 490 KELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDD--VVRPIKQGNDNKIDGAVALIM 547 Query: 571 AFG 573 A G Sbjct: 548 AVG 550 >gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp2 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945032;genbank:gi:38707892;genbank:GeneID :2744144 Length = 571 Score = 39.3 bits (90), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 4/61 (6%) Query: 515 LEDAVLEGEVWHDGNPVLRQHVLN--AKRHPTNYDAIAIRKVTKDSSKKIDAAVCAVLAF 572 LE A+ G HDGNP++ V N K P N D +R + + + KID AV ++A Sbjct: 492 LEAAITAGRFHHDGNPIMTWCVSNVIGKNLPGNDD--VVRPIKQGNDNKIDGAVALIMAI 549 Query: 573 G 573 G Sbjct: 550 G 550 >gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512312;genbank:gi:89152481;genbank:GeneID :3953072 Length = 565 Score = 38.5 bits (88), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 60/265 (22%), Positives = 103/265 (38%), Gaps = 53/265 (20%) Query: 343 IKSILSTKNPITESRRKFLNQ-----VNAAEDSWLSPQEWNRCQVDLAKYLDKHGREFAP 397 I+S L E R FL + V+ ++ ++ +W +C+VD + Sbjct: 303 IRSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEVDTLDF---------- 352 Query: 398 LQRGDRITLGFDGSKSNDWTALVGCRVSDGLLFVI----------------------DIW 435 G + +G D S + D T++ + D F++ D+W Sbjct: 353 --SGATLWIGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSFMPEARLKEKMAIDKVRYDLW 410 Query: 436 DPQKYGGEVPREDVDAKVHSAFAHYDVVAFRAD--VKEFEAYVDQWGRTYKKKLKVNASP 493 Q Y P E VD + ++ + F D ++EF+ D+W + L N Sbjct: 411 AEQGYLTLTPGEMVDYTIVESW----IENFSKDKEIQEFD--YDKWNALH---LAQNLEN 461 Query: 494 NNPVAFDMRGQQKRFAFDCERLEDAVLEGEVWHDGNPVLRQHVLNAKRHPTNYDAIAIRK 553 V ++ + + + + V E +V H+G+PVL + NA + + I I K Sbjct: 462 KGFVCVEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISK 521 Query: 554 VTKDSSKKIDAAVCAVLAFGARQDY 578 K S +ID A + AF AR Y Sbjct: 522 --KISKNRIDPAAAVLNAF-ARAMY 543 >gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338134;genbank:gi:77020208;genbank:GeneID :3703792 Length = 565 Score = 38.5 bits (88), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/259 (22%), Positives = 100/259 (38%), Gaps = 52/259 (20%) Query: 343 IKSILSTKNPITESRRKFLNQ-----VNAAEDSWLSPQEWNRCQVDLAKYLDKHGREFAP 397 I+S L E R FL + V+ ++ ++ +W +C+VD + Sbjct: 303 IRSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEVDTXDF---------- 352 Query: 398 LQRGDRITLGFDGSKSNDWTALVGCRVSDGLLFVI----------------------DIW 435 G + +G D S + D T++ + D F++ D+W Sbjct: 353 --SGATLWIGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSFMPEARLKEKMAIDKVRYDLW 410 Query: 436 DPQKYGGEVPREDVDAKVHSAFAHYDVVAFRAD--VKEFEAYVDQWGRTYKKKLKVNASP 493 Q Y P E VD + ++ + F D ++EF+ D+W + L N Sbjct: 411 AEQGYLTLTPGEMVDYTIVESW----IENFSKDKEIQEFD--YDKWNALH---LAQNLEN 461 Query: 494 NNPVAFDMRGQQKRFAFDCERLEDAVLEGEVWHDGNPVLRQHVLNAKRHPTNYDAIAIRK 553 V ++ + + + + V E +V H+G+PVL + NA + + I I K Sbjct: 462 KGFVCVEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISK 521 Query: 554 VTKDSSKKIDAAVCAVLAF 572 K S +ID A + AF Sbjct: 522 --KISKNRIDPAAAVLNAF 538 >gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: putative phage terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459966;genbank:gi:85701381;genbank:GeneID :3882142 Length = 565 Score = 38.1 bits (87), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 60/265 (22%), Positives = 103/265 (38%), Gaps = 53/265 (20%) Query: 343 IKSILSTKNPITESRRKFLNQ-----VNAAEDSWLSPQEWNRCQVDLAKYLDKHGREFAP 397 I+S L E R FL + V+ ++ ++ +W +C+VD + Sbjct: 303 IRSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEVDTFDF---------- 352 Query: 398 LQRGDRITLGFDGSKSNDWTALVGCRVSDGLLFVI----------------------DIW 435 G + +G D S + D T++ + D F++ D+W Sbjct: 353 --SGATLWIGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSFMPEARLKEKMAIDKVRYDLW 410 Query: 436 DPQKYGGEVPREDVDAKVHSAFAHYDVVAFRAD--VKEFEAYVDQWGRTYKKKLKVNASP 493 Q Y P E VD + ++ + F D ++EF+ D+W + L N Sbjct: 411 AEQGYLTLTPGEMVDYTIVESW----IENFSKDKEIQEFD--YDKWNALH---LAQNLEN 461 Query: 494 NNPVAFDMRGQQKRFAFDCERLEDAVLEGEVWHDGNPVLRQHVLNAKRHPTNYDAIAIRK 553 V ++ + + + + V E +V H+G+PVL + NA + + I I K Sbjct: 462 KGFVCVEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISK 521 Query: 554 VTKDSSKKIDAAVCAVLAFGARQDY 578 K S +ID A + AF AR Y Sbjct: 522 --KISKNRIDPAAAVLNAF-ARAMY 543 >gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338185;genbank:gi:77020155;genbank:GeneID :3703707 Length = 565 Score = 38.1 bits (87), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 57/260 (21%), Positives = 100/260 (38%), Gaps = 52/260 (20%) Query: 343 IKSILSTKNPITESRRKFLNQ-----VNAAEDSWLSPQEWNRCQVDLAKYLDKHGREFAP 397 I+S L E R FL + V+ ++ ++ +W +C+VD + Sbjct: 303 IRSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEVDTFDF---------- 352 Query: 398 LQRGDRITLGFDGSKSNDWTALVGCRVSDGLLFVI----------------------DIW 435 G + +G D S + D T++ + D F++ D+W Sbjct: 353 --SGATLWIGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSFMPEARLKEKMAIDKVRYDLW 410 Query: 436 DPQKYGGEVPREDVDAKVHSAFAHYDVVAFRAD--VKEFEAYVDQWGRTYKKKLKVNASP 493 Q Y P E VD + ++ + F D ++EF+ D+W + L N Sbjct: 411 AEQGYLTLTPGEMVDYTIVESW----IENFSKDKEIQEFD--YDKWNALH---LAQNLEN 461 Query: 494 NNPVAFDMRGQQKRFAFDCERLEDAVLEGEVWHDGNPVLRQHVLNAKRHPTNYDAIAIRK 553 V ++ + + + + V E +V H+G+PVL + NA + + I I K Sbjct: 462 KGFVCVEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISK 521 Query: 554 VTKDSSKKIDAAVCAVLAFG 573 K S +ID A + AF Sbjct: 522 --KISKNRIDPAAAVLNAFS 539 >gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612831;genbank:gi:20065965;genbank:GeneID :935781 Length = 581 Score = 37.4 bits (85), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 100/486 (20%), Positives = 179/486 (36%), Gaps = 101/486 (20%) Query: 141 GNPVG-KPRSAAWITVAAVSQDQTKNTFSLFPVMISKKLKAEYGLDVNRFIIYSAAGGRI 199 G +G K +AA + V +DQ K F + +M SK LK + + I + + I Sbjct: 125 GYEIGAKGYNAAEVYTLGVERDQAKIVFEEWELMASKPLKKRFKF-TQKVIKHKKSNSFI 183 Query: 200 EAATSSPASM-EGNRPTFVVQNETQWWGQGPDGKVNEGHAMAEVIEGNMTKVEGSRTLSI 258 + + +G P V +E + P+ K M +V++ M + I Sbjct: 184 KHLSKKAGKTGDGKNPQMAVIDE---YHAHPNSK------MYDVMKSGMMARTEPLLVII 234 Query: 259 CNAHIPGTETVAEKAWDEYQKVQAG--DSVDTGMMYDALEAPADTPVSEIPPQKEDPE-- 314 A ET + + + G ++ +M LE D P E K +P Sbjct: 235 TTAGEDYEETACYYEYLDCCSILDGTFENEKYFVMICELE-DEDDPFDEKAWIKANPVLC 293 Query: 315 GFEKGIEKLREGLLIARGDSTWLPIDDIIKSILSTKNPITESRRKFLNQ-----VNAAED 369 +E+GIE +R+ +A+ S E R +FL + V A E Sbjct: 294 TYEEGIESMRQNANLAKNTSN------------------EEKRIEFLTKNCNIYVAAGEK 335 Query: 370 SWLSPQEWNRCQVDLAKYLDKHGREFAPLQRGDRITLGFDGSKSNDWTALV--------G 421 ++ + W C+ ++ L+K RG +G D SKS D T++ G Sbjct: 336 KYVDVEFWKACKENIT--LEKF--------RGHDCYIGMDLSKSGDLTSIAFEFPYLDEG 385 Query: 422 CR--VSDGLLFV---------------IDIWDPQKYGGEVPREDVDAKVHSAFAHYDVVA 464 R G F+ +IW ++ G + E + ++ +A + + Sbjct: 386 IRKYALFGKSFIPAEVVKEKMKTDNVPYNIWSSKEKGWLIKTEANEGQIVDLWAILNTI- 444 Query: 465 FRADVKEFEAYVDQWGRTYKKKLKVNASPNNPVAFDMRGQQKRFAF-----DCERLEDAV 519 + VKE+E V ++V+ P+ +++ + C +L +A Sbjct: 445 -ESIVKEYELNV----------IEVSYDPHGAAMLVSELERRDYNCVECGQSCAKLNEAT 493 Query: 520 LE-------GEVWHDGNPVLRQHVLNAKRHPTNYDAIAIRKVTKDSSKKIDAAVCAVLAF 572 + ++ HD N ++ V NA++ ++ I I K K K+ID + A Sbjct: 494 VNFRDLMKIKQIVHDENNLMTWCVQNAEKDTNSFGEIKISK--KSRFKRIDPLASCIFAH 551 Query: 573 GARQDY 578 Y Sbjct: 552 NRAMTY 557 >gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061498;genbank:gi:9635588;genbank:GeneID: 1262853 Length = 563 Score = 37.0 bits (84), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 55/234 (23%), Positives = 82/234 (35%), Gaps = 34/234 (14%) Query: 357 RRKFLNQVNAAEDSWLSPQEWNRCQVDLAKYLDKHGREFAPLQRGDRITLGFDGSKSNDW 416 R K LNQ A W++ W R + D A + G R + D + D Sbjct: 324 RTKHLNQWVGARTVWMNMLAWQRQKRDFT---------IADMA-GCRCWMALDLASKKDV 373 Query: 417 TALVGCRVSDGLLFVIDIWDPQKYGGEVPREDVD----------------AKVHSAFAHY 460 ALV G + I P+ Y E E+ + + AF Sbjct: 374 AALVMLFEKAGQFYCI----PRFYAPEAAAEENEKYQNFALEGHLVLTPGSMTDYAFIEA 429 Query: 461 DVVAFRADVKEFEAYVDQWGRTYKKKLKVNASPNNPVAFDMRGQQKRFAFDCERLEDAVL 520 D++ + +A D W Y L S + D K + + +E V+ Sbjct: 430 DILDLAKQIDLQDAAFDDWQANY---LITRLSNTSIPVVDFNQTVKNMSDPMKEVEARVI 486 Query: 521 EGEVWHDGNPVLRQHVLNAKRHPTNYDAIAIRKVT-KDSSKKIDAAVCAVLAFG 573 +WHDGNPV+ + N + I RK D + KID V ++A G Sbjct: 487 ARTLWHDGNPVMTWMMGNVAAKIDAKENIYPRKENDNDPNCKIDGPVTLIMAMG 540 >gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putative terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543088;swissprot:trembl:q8w631;genbank:gi :18249900;uniprot:Q8W631;genbank:GeneID:929687 Length = 570 Score = 37.0 bits (84), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 30/61 (49%) Query: 513 ERLEDAVLEGEVWHDGNPVLRQHVLNAKRHPTNYDAIAIRKVTKDSSKKIDAAVCAVLAF 572 + LE A+ G HDGNPV+ + N D +R + + + KID AV ++A Sbjct: 487 KELEAAIEAGRFHHDGNPVMTWCISNVIGKHIPGDDDVVRPIKQGNENKIDGAVALIMAI 546 Query: 573 G 573 G Sbjct: 547 G 547 >gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700375;genbank:gi:23505447;genbank:GeneID :955654 Length = 577 Score = 36.2 bits (82), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Query: 513 ERLEDAVLEGEVWHDGNPVLRQHVLN--AKRHPTNYDAIAIRKVTKDSSKKIDAAVCAVL 570 + LE A+ G HDGNP++ + N K P N D ++ + + + KID AV ++ Sbjct: 494 KELEAAIESGRFHHDGNPIMTWCIGNVVGKTIPGNDD--VVKPIKEQAENKIDGAVALIM 551 Query: 571 AFGARQDY 578 A G Y Sbjct: 552 AVGRAMLY 559 >gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp2, phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111081;genbank:gi:134288625;genbank:Ge neID:4960582 Length = 571 Score = 35.8 bits (81), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Query: 515 LEDAVLEGEVWHDGNPVLRQHVLN--AKRHPTNYDAIAIRKVTKDSSKKIDAAVCAVLAF 572 LE A+ HDGNP++ + N K P N D +R V + + KID AV ++A Sbjct: 493 LEAAITSRRFHHDGNPIMTWCISNVIGKNLPGNDD--VVRPVKQGNDNKIDGAVALIMAV 550 Query: 573 G 573 G Sbjct: 551 G 551 >gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599034;genbank:gi:19548992;genbank:GeneID :935222 Length = 577 Score = 35.8 bits (81), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 513 ERLEDAVLEGEVWHDGNPVLRQHVLNA--KRHPTNYDAIAIRKVTKDSSKKIDAAVCAVL 570 + LE A+ G HDGNP++ + N K P N D ++ V + + KID AV ++ Sbjct: 494 KELEAAIESGRFHHDGNPIMTWCIGNVVGKNMPGNDD--LVKPVKEQAENKIDGAVALIM 551 Query: 571 AFG 573 G Sbjct: 552 TIG 554 >gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037698;genbank:gi:9634166;genbank:GeneID: 1262528 Length = 504 Score = 33.1 bits (74), Expect = 0.009, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 69/187 (36%), Gaps = 23/187 (12%) Query: 407 GFDGSKSNDWTALV-GCRVSDGLLFVIDI-WDPQKYGGEVPREDV--------------- 449 G D S ND TALV DG+ V W PQK E + D Sbjct: 300 GLDLSARNDLTALVIAGEADDGVWDVFPFFWTPQKTLEERTKTDRAPYDVWVREGLLRTT 359 Query: 450 -DAKVHSAFAHYDVVAFRADVKEFEAYVDQWGRTYKKKLKVNASPNNPVAFDMRGQQKRF 508 A V +F D+ D D+W R + + +A + + K Sbjct: 360 PGASVDYSFVVADIAEIIGDFDLTSMAFDRW-RIDQFRKDADAIGLSLPLVEFGQGFKDM 418 Query: 509 AFDCERLEDAVLEGEVWHDGNPVLRQHVLNAKRHPTNYDAIAIRKVTKD-SSKKIDAAVC 567 + LE +L G V H +PVL +NA DA RK+ K ++ +ID V Sbjct: 419 GPAVDTLESLMLNGRVRHGMHPVLTMCAVNAV---VVKDAAGNRKLDKSKATGRIDGMVA 475 Query: 568 AVLAFGA 574 ++ GA Sbjct: 476 MTMSVGA 482 >gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037663;genbank:gi:9634121;genbank:GeneID: 1262500 Length = 504 Score = 33.1 bits (74), Expect = 0.010, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 69/187 (36%), Gaps = 23/187 (12%) Query: 407 GFDGSKSNDWTALV-GCRVSDGLLFVIDI-WDPQKYGGEVPREDV--------------- 449 G D S ND TALV DG+ V W PQK E + D Sbjct: 300 GLDLSARNDLTALVIAGEADDGVWDVFPFFWTPQKTLEERTKTDRAPYDVWVREGLLRTT 359 Query: 450 -DAKVHSAFAHYDVVAFRADVKEFEAYVDQWGRTYKKKLKVNASPNNPVAFDMRGQQKRF 508 A V +F D+ D D+W R + + +A + + K Sbjct: 360 PGASVDYSFVVADIAEIIGDFDLTSIAFDRW-RIDQFRKDADAIGLSLPLVEFGQGFKDM 418 Query: 509 AFDCERLEDAVLEGEVWHDGNPVLRQHVLNAKRHPTNYDAIAIRKVTKD-SSKKIDAAVC 567 + LE +L G V H +PVL +NA DA RK+ K ++ +ID V Sbjct: 419 GPAVDTLESLMLNGRVRHGMHPVLTMCAVNAV---VVKDAAGNRKLDKSKATGRIDGMVA 475 Query: 568 AVLAFGA 574 ++ GA Sbjct: 476 MTMSVGA 482 >gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892047;genbank:gi:33770510;interpro:IPR00 5021;uniprot:Q7Y413;genbank:GeneID:1732947 Length = 577 Score = 31.6 bits (70), Expect = 0.028, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 26/61 (42%) Query: 513 ERLEDAVLEGEVWHDGNPVLRQHVLNAKRHPTNYDAIAIRKVTKDSSKKIDAAVCAVLAF 572 + LE A+ G HDGNP+L + N +R D KID A ++A Sbjct: 496 KELEAALAGGRFHHDGNPILAWCISNVLGTFVPGSDDRVRPTKGDKQSKIDGATALLMAI 555 Query: 573 G 573 G Sbjct: 556 G 556 >gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690755;genbank:gi:22854995;genbank:GeneID :955207 Length = 416 Score = 30.4 bits (67), Expect = 0.061, Method: Compositional matrix adjust. Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 17/94 (18%) Query: 343 IKSILSTKNPITESRRKFLNQ-----VNAAEDSWLSPQEWNRCQVDLAKYLDKHGREFAP 397 ++S L + E R FL + V+ ++ ++ +W C ++ P Sbjct: 293 LRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEI------------P 340 Query: 398 LQRGDRITLGFDGSKSNDWTALVGCRVSDGLLFV 431 +G + LG D S + D T++ V DG +V Sbjct: 341 DLQGLPVYLGLDLSMTTDLTSVGYVAVQDGFFYV 374 >gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285808;genbank:gi:148747729;genbank:Ge neID:5247221 Length = 567 Score = 29.3 bits (64), Expect = 0.14, Method: Compositional matrix adjust. Identities = 48/228 (21%), Positives = 86/228 (37%), Gaps = 47/228 (20%) Query: 341 DIIKSILSTKNPITESRRKFLNQ-----VNAAEDSWLSPQEWNRCQVDLAKYLDKHGREF 395 + ++S L T + E R FL + V+ ++ +L +W C + +E Sbjct: 302 NFLRSELQTALDVPEKMRSFLTKNMNIWVDQKDNGYLPLDKWRACAI----------KEQ 351 Query: 396 APLQRGDRITLGFDGSKSNDWTALVGCR-VSDGLLFVIDIWDPQKYGGEVPREDVDAKVH 454 L D +G D S D T++ G + DG +V W +P + + K Sbjct: 352 IDLDVRD-CYVGIDLSMRIDLTSVSGIVPMDDGRFYV---WS----HSFIPEDTLAEKRR 403 Query: 455 SAFAHYDVVAFR----------ADVKEFEAYVDQWGRTYKKKLK-VNASPNNPVAF---- 499 + YD+ + D + +AY+ + +K + P N F Sbjct: 404 TDKVPYDLWVKQGWITVTPGAVVDYQFIQAYIKRLAEDKMWNIKEICYDPYNATHFAHEM 463 Query: 500 --------DMRGQQKRFAFDCERLEDAVLEGEVWHDGNPVLRQHVLNA 539 ++R + + +R + VL G++ HD NPVL + NA Sbjct: 464 EAEGYVMVEIRQGFRTLSEPTKRFRELVLSGKILHDDNPVLNWAIGNA 511 >gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006582;genbank:gi:46402088;genbank:GeneID :2777952 Length = 569 Score = 28.5 bits (62), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 4/69 (5%) Query: 500 DMRGQQKRFAFDCERLEDAVLEGEVWHDGNPVLRQHVLN--AKRHPTNYDAIAIRKVTKD 557 D+R + + LE A+ G HDGNP+L + N K P + D +R D Sbjct: 475 DIRQDYTNMSPAMKELEAALAGGRFHHDGNPILTWCISNVIGKFIPGSDD--LVRPTKGD 532 Query: 558 SSKKIDAAV 566 + KID A Sbjct: 533 NQSKIDGAT 541 >gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025027;genbank:gi:48697260;genbank:GeneID :2948297 Length = 629 Score = 27.3 bits (59), Expect = 0.52, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 12/52 (23%) Query: 368 EDSWLSPQEWNRCQVDLAKYLDKHGREFAPLQRGDRITLGFDGSKSNDWTAL 419 ++S+LS R +D + D +GR+ + +GFDGS++ND T+ Sbjct: 373 QNSYLSLDNIQRSIID---HFDVNGRD---------VFIGFDGSQTNDNTSF 412 >gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795461;genbank:gi:28876230;genbank:GeneID :1257775 Length = 584 Score = 25.8 bits (55), Expect = 1.4, Method: Compositional matrix adjust. Identities = 47/236 (19%), Positives = 85/236 (36%), Gaps = 44/236 (18%) Query: 366 AAEDSWLSPQEWNRCQVDLAKYLDKHGREFAPLQRGDRITLGFDGSKSNDWTALVGCRVS 425 ++E+S++ Q W Q+D P R+ LG D + +D A+ + Sbjct: 346 SSEESYIDKQSWELAQID------------KPDTYKRRVWLGVDVGRVSDLFAISSVIMM 393 Query: 426 DGLLFVIDIWDPQKYGGEVPREDVDAKVHSAF---AHYDVVAFRADVKEFEAYVDQWGR- 481 D ++ G +E D +S + ++ + V + E +++ Sbjct: 394 DDYWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEM 453 Query: 482 TYKKKLKVNASPNNPVAFD--MRGQQKR---------------FAFDCERLEDAVLEGEV 524 Y + +VN +P F + +KR ++ D + +G++ Sbjct: 454 VYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKI 513 Query: 525 WHDGNPVLRQHVLNAKRHPTNYDAIAIRKVTKDSSKKID--------AAVCAVLAF 572 H GNP+L V NA N +R +S KID AVC + F Sbjct: 514 KHSGNPLLTMAVNNAYIKTDNN---GMRIDKNKNSNKIDPLDAALDGYAVCYLEPF 566 >gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358760;genbank:gi:78000026;genbank:GeneID :3726151 Length = 630 Score = 25.8 bits (55), Expect = 1.5, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 12/52 (23%) Query: 368 EDSWLSPQEWNRCQVDLAKYLDKHGREFAPLQRGDRITLGFDGSKSNDWTAL 419 ++S+LS R +D D +GR+ + +GFDGS++ND T+ Sbjct: 374 QNSYLSLDNIQRSIIDR---FDVNGRD---------VFIGFDGSQTNDNTSF 413 >gi|5606|lcl|protein:vir:107886 Length: 500 # NCBI annotation: gp28 # Family: family:all:460 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024701;genbank:gi:48696938;genbank:GeneID :2845974 Length = 500 Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust. Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 7/69 (10%) Query: 150 AAWITVAAVSQDQTKNTFSLFPVMISKKLKAEYGLDVNRFIIYSAAGGRIEAATSSPASM 209 A W +++ D+ + T +F K + F+I A+G R+ A +S P+++ Sbjct: 78 ADWAKFYSLAADEIEETEEVFQDKDGDK-------SILAFVIRFASGFRVTALSSRPSNL 130 Query: 210 EGNRPTFVV 218 G + ++ Sbjct: 131 RGKQGRVII 139 >gi|8010|lcl|protein:vir:100250 Length: 570 # NCBI annotation: gp79 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355415;genbank:gi:77864705;genbank:GeneID :3725972 Length = 570 Score = 25.0 bits (53), Expect = 2.9, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%) Query: 513 ERLE-DAVLEGEVWHDGNPVLRQHVLNAKRHPTNYDAIAIRKVTKDSSK 560 +R+E D +G ++H G P+L V NA+ P +A+ I K ++K Sbjct: 489 QRIEGDEAPDGALYHGGQPLLTWAVGNARVVPVG-NAVNITKQVSGTAK 536 >gi|14832|lcl|protein:vir:4098 Length: 192 # NCBI annotation: major tail protein a # Family: family:all:28683 # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510991;swissprot:trembl:q8w5z9;genbank:gi :17488513;uniprot:Q8W5Z9;genbank:GeneID:1260362 Length = 192 Score = 23.9 bits (50), Expect = 5.8, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 18/37 (48%) Query: 83 DEQVRLVLWWYAVDDQGQYIYREGVIRRLKGWGKDPF 119 DE + L + A+ D + Y E ++ L G+D F Sbjct: 139 DEVAEIELEFTAMIDDNRKCYYEAIVSELDATGRDAF 175 >gi|25348|lcl|protein:vir:80989 Length: 607 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469498;genbank:gi:157311455;genbank:Ge neID:5602125 Length = 607 Score = 23.5 bits (49), Expect = 7.1, Method: Compositional matrix adjust. Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 5/71 (7%) Query: 154 TVAAVSQDQTKNTFSLFPVMISKKLKAEYGLDVNRFIIYSAAGGRIEAATSSPASMEGNR 213 ++A ++TK L P + + ++ N+ I G I A SSP ++ GN Sbjct: 192 SMAVEVLERTKQAIELLPDFLQPGI-----VEWNKKSIVLENGSSIGAYASSPDAVRGNS 246 Query: 214 PTFVVQNETQW 224 +F+ +E + Sbjct: 247 FSFIYIDECAF 257 >gi|27123|lcl|protein:vir:6593 Length: 607 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891724;genbank:gi:33620526;genbank:GeneID :1725332 Length = 607 Score = 23.5 bits (49), Expect = 7.8, Method: Compositional matrix adjust. Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 5/71 (7%) Query: 154 TVAAVSQDQTKNTFSLFPVMISKKLKAEYGLDVNRFIIYSAAGGRIEAATSSPASMEGNR 213 ++A ++TK L P + + ++ N+ I G I A SSP ++ GN Sbjct: 192 SMAVEVLERTKQAIELLPDFLQPGI-----VEWNKKSIVLENGSSIGAYASSPDAVRGNS 246 Query: 214 PTFVVQNETQW 224 +F+ +E + Sbjct: 247 FSFIYIDECAF 257 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.317 0.134 0.417 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 298,126 Number of Sequences: 514 Number of extensions: 14773 Number of successful extensions: 127 Number of sequences better than 100.0: 42 Number of HSP's better than 100.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 53 Number of HSP's gapped (non-prelim): 52 length of query: 593 length of database: 206,069 effective HSP length: 77 effective length of query: 516 effective length of database: 166,491 effective search space: 85909356 effective search space used: 85909356 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 40 (20.0 bits)