Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : StauST398-1 | Genbank acc : NC_021326

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 69

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	28	lcl\|NC_021326.1_cdsid_YP_008059001.1	HHsearch (proba=100.00%)
Portal	31	lcl\|NC_021326.1_cdsid_YP_008059004.1	HHsearch (proba=100.00%)
TermL	32	lcl\|NC_021326.1_cdsid_YP_008059005.1	Blast (e-value=0)
MTP	22	lcl\|NC_021326.1_cdsid_YP_008058995.1	Blast (e-value=1e-107)
Sheath	NOT FOUND
Ad1	26	lcl\|NC_021326.1_cdsid_YP_008058999.1	HHsearch (proba=100.00%)
Hc1	25	lcl\|NC_021326.1_cdsid_YP_008058998.1	HHsearch (proba=100.00%)
Ne1	24	lcl\|NC_021326.1_cdsid_YP_008058997.1	HHsearch (proba=100.00%)
Tc1	23	lcl\|NC_021326.1_cdsid_YP_008058996.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:1239 protein:vir:93742 protein:vir:97433	phi ETA 55 92	100 % 99 % 98 %
Portal	protein:vir:93747 protein:vir:1236 protein:vir:97336	55 phi ETA 52A	99 % 99 % 98 %
TermL	protein:vir:93748 protein:vir:1235 protein:vir:97273	55 phi ETA 52A	100 % 100 % 99 %
MTP	protein:vir:97420 protein:vir:97324 protein:vir:95960	92 52A 71	100 % 100 % 100 %
Ad1	protein:vir:97430 protein:vir:94492 protein:vir:95071	92 88 X2	99 % 99 % 98 %
Hc1	protein:vir:1242 protein:vir:97429 protein:vir:95896	phi ETA 92 71	98 % 97 % 97 %
Ne1	protein:vir:97427 protein:vir:94490 protein:vir:93738	92 88 55	100 % 100 % 100 %
Tc1	protein:vir:97421 protein:vir:94488 protein:vir:93736	92 88 55	100 % 100 % 100 %