BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_021326.1_cdsid_YP_008059005.1 [gene=M175_gp32] [protein=putative large terminase subunit] [protein_id=YP_008059005.1] [location=complement(27074..28060)] (328 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|14951|lcl|protein:vir:1235 Length: 405 # NCBI annotation: sim... 675 0.0 gi|1596|lcl|protein:vir:93748 Length: 403 # NCBI annotation: ORF... 674 0.0 gi|4261|lcl|protein:vir:94806 Length: 402 # NCBI annotation: ORF... 670 0.0 gi|9935|lcl|protein:vir:97273 Length: 402 # NCBI annotation: ORF... 667 0.0 gi|2589|lcl|protein:vir:94084 Length: 407 # NCBI annotation: ORF... 310 2e-86 gi|3523|lcl|protein:vir:105897 Length: 407 # NCBI annotation: la... 310 2e-86 gi|16780|lcl|protein:vir:2731 Length: 411 # NCBI annotation: hyp... 266 2e-73 gi|13692|lcl|protein:vir:4897 Length: 411 # NCBI annotation: gp4... 262 3e-72 gi|2931|lcl|protein:vir:105460 Length: 409 # NCBI annotation: pu... 243 3e-66 gi|8015|lcl|protein:vir:96495 Length: 195 # NCBI annotation: ter... 165 9e-43 gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: te... 106 5e-25 gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: pu... 104 2e-24 gi|11736|lcl|protein:vir:79016 Length: 417 # NCBI annotation: pu... 57 2e-10 gi|16299|lcl|protein:vir:3027 Length: 375 # NCBI annotation: ter... 54 3e-09 gi|16025|lcl|protein:vir:9814 Length: 403 # NCBI annotation: put... 54 3e-09 gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: t... 50 4e-08 gi|6719|lcl|protein:vir:99411 Length: 447 # NCBI annotation: hyp... 46 5e-07 gi|7301|lcl|protein:vir:96238 Length: 447 # NCBI annotation: ORF... 44 3e-06 gi|17691|lcl|protein:vir:9305 Length: 447 # NCBI annotation: lar... 44 3e-06 gi|11622|lcl|protein:vir:78869 Length: 439 # NCBI annotation: Te... 44 3e-06 gi|9829|lcl|protein:vir:103950 Length: 425 # NCBI annotation: ph... 44 3e-06 gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: put... 44 4e-06 gi|7643|lcl|protein:vir:96370 Length: 447 # NCBI annotation: ORF... 43 4e-06 gi|11588|lcl|protein:vir:78831 Length: 447 # NCBI annotation: te... 43 4e-06 gi|2779|lcl|protein:vir:99776 Length: 425 # NCBI annotation: lar... 42 7e-06 gi|5208|lcl|protein:vir:106641 Length: 446 # NCBI annotation: OR... 42 8e-06 gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: ter... 38 2e-04 gi|15353|lcl|protein:vir:9921 Length: 425 # NCBI annotation: put... 37 2e-04 gi|9289|lcl|protein:vir:97165 Length: 431 # NCBI annotation: ORF... 36 5e-04 gi|5321|lcl|protein:vir:99534 Length: 422 # NCBI annotation: put... 35 0.001 gi|155|lcl|protein:vir:77595 Length: 499 # NCBI annotation: term... 34 0.003 gi|18891|lcl|protein:vir:8847 Length: 482 # NCBI annotation: ter... 33 0.004 gi|8380|lcl|protein:vir:96782 Length: 408 # NCBI annotation: put... 33 0.005 gi|13374|lcl|protein:vir:9262 Length: 517 # NCBI annotation: gp2... 33 0.005 gi|3300|lcl|protein:vir:100942 Length: 499 # NCBI annotation: Gp... 32 0.007 gi|4938|lcl|protein:vir:94991 Length: 423 # NCBI annotation: hyp... 29 0.068 gi|1219|lcl|protein:vir:105519 Length: 475 # NCBI annotation: ph... 29 0.072 gi|24686|lcl|protein:vir:79769 Length: 635 # NCBI annotation: te... 26 0.63 gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA... 25 1.3 gi|8730|lcl|protein:vir:96840 Length: 421 # NCBI annotation: ORF... 24 2.4 gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hyp... 23 3.7 gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF... 23 5.2 gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: termi... 23 6.8 >gi|14951|lcl|protein:vir:1235 Length: 405 # NCBI annotation: similar to phage O1205 ORF26 ( putative large subunit terminase) # Family: family:all:54 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510934;genbank:gi:17426268;genbank:GeneID :927381 Length = 405 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/328 (99%), Positives = 328/328 (100%) Query: 1 MELILGRELTLDKSNAVKIFGNKVYVFDGQNSDAWKKARGFTSAGAFLNEGTALHNMFIK 60 MELILGRELTLDKSNAVKIFGNKVYVFDGQNSDAWKKARGFTSAGAFLNEGTALHNMFIK Sbjct: 78 MELILGRELTLDKSNAVKIFGNKVYVFDGQNSDAWKKARGFTSAGAFLNEGTALHNMFIK 137 Query: 61 EVFSRCSYKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE 120 EVFSRCSYKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE Sbjct: 138 EVFSRCSYKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE 197 Query: 121 EYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVD 180 EYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVD Sbjct: 198 EYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVD 257 Query: 181 WGYEHYGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWVAIAKGVIKRHGDILFYCDTARPE 240 WGYEHYGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWVAIAKGVIKRHGDILFYCDTARPE Sbjct: 258 WGYEHYGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWVAIAKGVIKRHGDILFYCDTARPE 317 Query: 241 HIERFRREKIKARYADKAVIAGIEVISRLFKLNKMFIIKEKVSLFKEEIYNYVWKDNADE 300 HIERFRREKIKARYADKAVIAGIEVISRLFKLNK+FIIKEKVSLFKEEIYNYVWKDNADE Sbjct: 318 HIERFRREKIKARYADKAVIAGIEVISRLFKLNKIFIIKEKVSLFKEEIYNYVWKDNADE 377 Query: 301 PVKLNDDTLDALRYAVYTANKPSGTGFN 328 PVKLNDDTLDALRYAVYTANKPSGTGFN Sbjct: 378 PVKLNDDTLDALRYAVYTANKPSGTGFN 405 >gi|1596|lcl|protein:vir:93748 Length: 403 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240453;genbank:gi:66396122;genbank:GeneID :5133517 Length = 403 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/328 (99%), Positives = 328/328 (100%) Query: 1 MELILGRELTLDKSNAVKIFGNKVYVFDGQNSDAWKKARGFTSAGAFLNEGTALHNMFIK 60 MELILGRELTLDKSNAVKIFGNKVYVFDGQNSDAWKKARGFTSAGAFLNEGTALHNMFIK Sbjct: 76 MELILGRELTLDKSNAVKIFGNKVYVFDGQNSDAWKKARGFTSAGAFLNEGTALHNMFIK 135 Query: 61 EVFSRCSYKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE 120 EVFSRCSYKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE Sbjct: 136 EVFSRCSYKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE 195 Query: 121 EYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVD 180 EYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVD Sbjct: 196 EYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVD 255 Query: 181 WGYEHYGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWVAIAKGVIKRHGDILFYCDTARPE 240 WGYEHYGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWVAIAKGVIKRHGDILFYCDTARPE Sbjct: 256 WGYEHYGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWVAIAKGVIKRHGDILFYCDTARPE 315 Query: 241 HIERFRREKIKARYADKAVIAGIEVISRLFKLNKMFIIKEKVSLFKEEIYNYVWKDNADE 300 HIERFRREKIKARYADKAVIAGIEVISRLFKLNK+FIIKEKVSLFKEEIYNYVWKDNADE Sbjct: 316 HIERFRREKIKARYADKAVIAGIEVISRLFKLNKIFIIKEKVSLFKEEIYNYVWKDNADE 375 Query: 301 PVKLNDDTLDALRYAVYTANKPSGTGFN 328 PVKLNDDTLDALRYAVYTANKPSGTGFN Sbjct: 376 PVKLNDDTLDALRYAVYTANKPSGTGFN 403 >gi|4261|lcl|protein:vir:94806 Length: 402 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240530;genbank:gi:66396200;genbank:GeneID :5133586 Length = 402 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/328 (99%), Positives = 327/328 (99%) Query: 1 MELILGRELTLDKSNAVKIFGNKVYVFDGQNSDAWKKARGFTSAGAFLNEGTALHNMFIK 60 MELILGRELTLDKSNAVKIFGNKVYVFDGQNSDAWKKARGFTSAGAFLNEGTALHNMFIK Sbjct: 75 MELILGRELTLDKSNAVKIFGNKVYVFDGQNSDAWKKARGFTSAGAFLNEGTALHNMFIK 134 Query: 61 EVFSRCSYKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE 120 EVFSRCS+KGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE Sbjct: 135 EVFSRCSHKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE 194 Query: 121 EYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVD 180 EYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYI EEEFKTKQIKRKYAGVD Sbjct: 195 EYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYITEEEFKTKQIKRKYAGVD 254 Query: 181 WGYEHYGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWVAIAKGVIKRHGDILFYCDTARPE 240 WGYEHYGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWVAIAKGVIKRHGDILFYCDTARPE Sbjct: 255 WGYEHYGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWVAIAKGVIKRHGDILFYCDTARPE 314 Query: 241 HIERFRREKIKARYADKAVIAGIEVISRLFKLNKMFIIKEKVSLFKEEIYNYVWKDNADE 300 HIERFRREKIKARYADKAVIAGIEVISRLFKLNK+FIIKEKVSLFKEEIYNYVWKDNADE Sbjct: 315 HIERFRREKIKARYADKAVIAGIEVISRLFKLNKIFIIKEKVSLFKEEIYNYVWKDNADE 374 Query: 301 PVKLNDDTLDALRYAVYTANKPSGTGFN 328 PVKLNDDTLDALRYAVYTANKPSGTGFN Sbjct: 375 PVKLNDDTLDALRYAVYTANKPSGTGFN 402 >gi|9935|lcl|protein:vir:97273 Length: 402 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240605;genbank:gi:66396276;genbank:GeneID :5133629 Length = 402 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/328 (98%), Positives = 326/328 (99%) Query: 1 MELILGRELTLDKSNAVKIFGNKVYVFDGQNSDAWKKARGFTSAGAFLNEGTALHNMFIK 60 MELILGRELTLDKSNAVKIFGNKVYVFDGQNSDAWKKARGFTSAGAFLNEGTALHNMFIK Sbjct: 75 MELILGRELTLDKSNAVKIFGNKVYVFDGQNSDAWKKARGFTSAGAFLNEGTALHNMFIK 134 Query: 61 EVFSRCSYKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE 120 EVFSRCS+KGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE Sbjct: 135 EVFSRCSHKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE 194 Query: 121 EYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVD 180 EYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYI EEEFKTKQIKRKYAGVD Sbjct: 195 EYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYITEEEFKTKQIKRKYAGVD 254 Query: 181 WGYEHYGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWVAIAKGVIKRHGDILFYCDTARPE 240 WGYEHYGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWVAIAKGVIKRHGDILFYCDTARPE Sbjct: 255 WGYEHYGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWVAIAKGVIKRHGDILFYCDTARPE 314 Query: 241 HIERFRREKIKARYADKAVIAGIEVISRLFKLNKMFIIKEKVSLFKEEIYNYVWKDNADE 300 HIERFRREKIKARYADKAVIAGIEVISRLFKLNK+ IIKEKVSLFKEEIYNYVWKDNADE Sbjct: 315 HIERFRREKIKARYADKAVIAGIEVISRLFKLNKISIIKEKVSLFKEEIYNYVWKDNADE 374 Query: 301 PVKLNDDTLDALRYAVYTANKPSGTGFN 328 PVKLNDDTLDALRYAVYTANKPSGTGFN Sbjct: 375 PVKLNDDTLDALRYAVYTANKPSGTGFN 402 >gi|2589|lcl|protein:vir:94084 Length: 407 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240228;genbank:gi:66395894;genbank:GeneID :5133253 Length = 407 Score = 310 bits (793), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 153/317 (48%), Positives = 208/317 (65%), Gaps = 5/317 (1%) Query: 6 GRELTLDKSNAVKIFGNKVYVFDGQNSDAWKKARGFTSAGAFLNEGTALHNMFIKEVFSR 65 G E DK N+ +FG +V RG TS GA++NE + H E+ SR Sbjct: 89 GIEFNFDKYNSFMLFGVQVVQTGHSKVSGIGAIRGMTSFGAYINEASLAHEEVFDEIKSR 148 Query: 66 CSYKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDEEYIES 125 CS GARIL+DTNP++P H + KDYI+ + + + I + QF L DN FL++ Y ES Sbjct: 149 CSGTGARILVDTNPDHPEHWLLKDYIENT-----DPKAGILSHQFKLDDNNFLNDRYKES 203 Query: 126 IIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVDWGYEH 185 I ASTP+GMF +R+I G WVS +GVVY DF + IK +E IK +AGVDWGYEH Sbjct: 204 IKASTPSGMFYERNINGMWVSGDGVVYADFDLNENTIKADELDDIPIKEYFAGVDWGYEH 263 Query: 186 YGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWVAIAKGVIKRHGDILFYCDTARPEHIERF 245 YGSI+++ DGN Y IEEHAH+ K IDDWV IAK ++ R+G+I FYCDTARPE+I F Sbjct: 264 YGSIVLIGRGIDGNFYFIEEHAHQFKFIDDWVVIAKDIVSRYGNINFYCDTARPEYITEF 323 Query: 246 RREKIKARYADKAVIAGIEVISRLFKLNKMFIIKEKVSLFKEEIYNYVWKDNADEPVKLN 305 RR +++A ADK+ ++G+E +++LFK NK+ ++ + + FK+E++ YVW EP+K Sbjct: 324 RRHRLRAINADKSKLSGVEEVAKLFKQNKLLVLYDNMDRFKQEVFKYVWHPTNGEPIKEF 383 Query: 306 DDTLDALRYAVYTANKP 322 DD LD+LRYA+YT KP Sbjct: 384 DDVLDSLRYAIYTHTKP 400 >gi|3523|lcl|protein:vir:105897 Length: 407 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004370;genbank:gi:122891825;genbank:Ge neID:4712368 Length = 407 Score = 310 bits (793), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 153/317 (48%), Positives = 208/317 (65%), Gaps = 5/317 (1%) Query: 6 GRELTLDKSNAVKIFGNKVYVFDGQNSDAWKKARGFTSAGAFLNEGTALHNMFIKEVFSR 65 G E DK N+ +FG +V RG TS GA++NE + H E+ SR Sbjct: 89 GIEFNFDKYNSFMLFGVQVVQTGHSKVSGIGAIRGMTSFGAYINEASLAHEEVFDEIKSR 148 Query: 66 CSYKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDEEYIES 125 CS GARIL+DTNP++P H + KDYI+ + + + I + QF L DN FL++ Y ES Sbjct: 149 CSGTGARILVDTNPDHPEHWLLKDYIENT-----DPKAGILSHQFKLDDNNFLNDRYKES 203 Query: 126 IIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVDWGYEH 185 I ASTP+GMF +R+I G WVS +GVVY DF + IK +E IK +AGVDWGYEH Sbjct: 204 IKASTPSGMFYERNINGMWVSGDGVVYADFDLNENTIKADELDDIPIKEYFAGVDWGYEH 263 Query: 186 YGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWVAIAKGVIKRHGDILFYCDTARPEHIERF 245 YGSI+++ DGN Y IEEHAH+ K IDDWV IAK ++ R+G+I FYCDTARPE+I F Sbjct: 264 YGSIVLIGRGIDGNFYFIEEHAHQFKFIDDWVVIAKDIVSRYGNINFYCDTARPEYITEF 323 Query: 246 RREKIKARYADKAVIAGIEVISRLFKLNKMFIIKEKVSLFKEEIYNYVWKDNADEPVKLN 305 RR +++A ADK+ ++G+E +++LFK NK+ ++ + + FK+E++ YVW EP+K Sbjct: 324 RRHRLRAINADKSKLSGVEEVAKLFKQNKLLVLYDNMDRFKQEVFKYVWHPTNGEPIKEF 383 Query: 306 DDTLDALRYAVYTANKP 322 DD LD+LRYA+YT KP Sbjct: 384 DDVLDSLRYAIYTHTKP 400 >gi|16780|lcl|protein:vir:2731 Length: 411 # NCBI annotation: hypothetical protein # Family: family:all:54 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695104;genbank:gi:23455873;genbank:GeneID :955606 Length = 411 Score = 266 bits (681), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 142/316 (44%), Positives = 202/316 (63%), Gaps = 15/316 (4%) Query: 6 GRELTLDKSNAVKIFGNKVY-VFDGQNSDAWKKARGFTSAGAFLNEGTALHNMFIKEVFS 64 G E DK + G KV V+ G S K+ARGFT+ GA++NE + + + KE+ S Sbjct: 88 GFEPKYDKHGSFVFCGVKVVQVYTGSIS-GLKRARGFTAFGAYVNEASLANELVFKEIIS 146 Query: 65 RCSYKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDEEYIE 124 RCS GAR++ D+NP+NP H + +DYI K+ ++ + F F L DNTFL + YI+ Sbjct: 147 RCSGDGARVVWDSNPDNPNHWLNRDYIGKNDGKIID-------FSFKLDDNTFLSKRYID 199 Query: 125 SIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVDWGYE 184 SI A+TP G F DRDI G W AEG +Y D+ K+H + E ++KR + G+DWGY Sbjct: 200 SIKAATPKGKFYDRDILGLWTVAEGAIYADYDSKIHVVDE----LPEMKRYFGGIDWGYT 255 Query: 185 HYGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWVAIAKGVIKRHGDILFYCDTARPEHIER 244 HYGSI++V E D N Y+++ A + KEID WV A+ + +G+I FY D+ARPEH+ R Sbjct: 256 HYGSIVIVGEGVDNNFYLVDGVAAQFKEIDWWVEQARKLTGIYGNIPFYADSARPEHVAR 315 Query: 245 FRREKIKARYADKAVIAGIEVISRLFKLNKMFIIKEKVSLFKEEIYNYVWKDNA--DEPV 302 F E A+K+VIAGIE+I++LFK K+++ + V F +EIY Y WK+N+ DEP+ Sbjct: 316 FENEGFDIMNANKSVIAGIELIAKLFKEKKLYVKRGFVPRFFDEIYQYRWKENSTKDEPL 375 Query: 303 KLNDDTLDALRYAVYT 318 K DD LD++RYA+Y+ Sbjct: 376 KEFDDVLDSVRYAIYS 391 >gi|13692|lcl|protein:vir:4897 Length: 411 # NCBI annotation: gp411 # Family: family:all:54 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056675;genbank:gi:9635008;genbank:GeneID: 1262679 Length = 411 Score = 262 bits (670), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 141/316 (44%), Positives = 199/316 (62%), Gaps = 15/316 (4%) Query: 6 GRELTLDKSNAVKIFGNKVY-VFDGQNSDAWKKARGFTSAGAFLNEGTALHNMFIKEVFS 64 G E DK + G KV V+ G S K+ARGFT+ GA++NE + + KE+ S Sbjct: 88 GFEPKYDKHGSFVFCGVKVVQVYTGSIS-GLKRARGFTAFGAYVNEASLANEFVFKEIIS 146 Query: 65 RCSYKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDEEYIE 124 RCS GAR++ D+NP+NP H + +DYI K+ ++ + F F L DNTFL + YI+ Sbjct: 147 RCSGDGARVVWDSNPDNPNHWLNRDYIGKNDGKIID-------FSFKLDDNTFLSKRYID 199 Query: 125 SIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVDWGYE 184 SI A TP G F DRDI G W AEG +Y D+ K+H + E ++KR + G+DWGY Sbjct: 200 SIKAVTPKGKFYDRDILGHWTVAEGAIYADYDSKIHVVDE----LPEMKRYFGGIDWGYT 255 Query: 185 HYGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWVAIAKGVIKRHGDILFYCDTARPEHIER 244 HYGSI++V E D N Y+++ + KEID WV A+ + +G+I FY D+ARPEH+ R Sbjct: 256 HYGSIVIVGEGVDNNFYLVDGVRAQFKEIDWWVEQARKLTGIYGNIPFYADSARPEHVAR 315 Query: 245 FRREKIKARYADKAVIAGIEVISRLFKLNKMFIIKEKVSLFKEEIYNYVWKDNA--DEPV 302 F E A+K+VIAGIE+I++LFK K+++ + V F +EIY Y WK+N+ DEP+ Sbjct: 316 FENEGFDISNANKSVIAGIELIAKLFKEQKLYVKRGFVPRFFDEIYQYRWKENSTKDEPL 375 Query: 303 KLNDDTLDALRYAVYT 318 K DD LD++RYA+Y+ Sbjct: 376 KEFDDVLDSVRYAIYS 391 >gi|2931|lcl|protein:vir:105460 Length: 409 # NCBI annotation: putative phage terminase large subunit B # Family: family:all:54 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529870;genbank:gi:90592610;genbank:GeneID :3974524 Length = 409 Score = 243 bits (619), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 123/292 (42%), Positives = 186/292 (63%), Gaps = 14/292 (4%) Query: 39 RGFTSAGAFLNEGT-ALHNMFIKEVFSRCSYKGARILIDTNPENPMHPVKKDYIDKSGQR 97 RG TS GA++NE + A H++F +E+ RCS +GARI+ DTNP+ P H +K DYID Sbjct: 121 RGMTSYGAYVNEASLATHDVF-QEILQRCSIEGARIICDTNPDIPTHWLKTDYIDNH--- 176 Query: 98 LSNGRLNIKAFQFTLFDNTFLDEEYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKE 157 + + IK+F FT+ DNTFL ++Y+ESI A+TP GMF DR I G+WV+ +G+VY+DF + Sbjct: 177 --DPKARIKSFTFTIDDNTFLSKDYVESIKAATPRGMFYDRGILGQWVTGDGIVYQDFNK 234 Query: 158 KVHYIKEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWV 217 I + + Y GVDWGYEH I+++ +D DGN YV+E++ +HK I+ WV Sbjct: 235 DTMVIPKN--RVPDGLDYYVGVDWGYEHPNPIILLGDDKDGNTYVLEDYTQKHKFINYWV 292 Query: 218 AIAKGVIKRHG-DILFYCDTARPEHIERFRREKIKARYADKAVIAGIEVISRLFKLNKMF 276 +A+ + R G +++FY D+ARP+++ F+ + A+K V+ GIE ++R + K + Sbjct: 293 KVAQNLQTRFGRNLIFYADSARPDNVNEFQSNGLNCINANKNVLPGIECVARKMREGKFY 352 Query: 277 IIKEKVSLFKEEIYNYVWKDNADEPVKLND----DTLDALRYAVYTANKPSG 324 ++ S +EIY Y W ++ P+K ND D LDA+RYA+Y+ NK G Sbjct: 353 VVDTASSGLLDEIYQYAWDESTGLPLKENDVRHNDRLDAIRYAIYSRNKKGG 404 >gi|8015|lcl|protein:vir:96495 Length: 195 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238487;genbank:gi:66391763;genbank:GeneID :5176917 Length = 195 Score = 165 bits (417), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 83/178 (46%), Positives = 119/178 (66%), Gaps = 6/178 (3%) Query: 143 KWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNKYV 202 KW AEG +Y D+ K+H + E ++KR + G+DWGY HYGSI+VV E DGN Y+ Sbjct: 2 KWTVAEGAIYADYDSKIHVVDE----LPEMKRCFGGIDWGYTHYGSIVVVGEGVDGNFYL 57 Query: 203 IEEHAHRHKEIDDWVAIAKGVIKRHGDILFYCDTARPEHIERFRREKIKARYADKAVIAG 262 ++ A + KEID WV A+ + + +I FY D+ARPEH+ RF E A+K+VIAG Sbjct: 58 LDGVAAQFKEIDWWVEQARKLTGIYRNIPFYADSARPEHVARFESEGFDISNANKSVIAG 117 Query: 263 IEVISRLFKLNKMFIIKEKVSLFKEEIYNYVWKDNA--DEPVKLNDDTLDALRYAVYT 318 IE+I++LFK K+++ + V F +EIY Y WK+N+ DEP+K DD LD++RYA+Y+ Sbjct: 118 IELIAKLFKEEKLYVKRGFVPRFFDEIYQYRWKENSTKDEPLKEFDDVLDSVRYAIYS 175 >gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: terminase, large subunit # Family: family:all:54 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945278;genbank:gi:39653713;goa:Q708N4;int erpro:IPR004921;interpro:IPR006437;uniprot:Q708N4;genban k:GeneID:2672855 Length = 421 Score = 106 bits (264), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 85/314 (27%), Positives = 138/314 (43%), Gaps = 31/314 (9%) Query: 22 NKVYVFDGQNSDAWKKARGFTSAGAFLNEGTALHNMFIKEVFSRCSYKGARILIDTNPEN 81 N Y+F G++ + +G T AG F +E + F+ + RCS G++ + NP+ Sbjct: 117 NDFYIFGGKDESSQDLIQGLTLAGIFFDEVALMPESFVNQGTGRCSVTGSKWWFNCNPDG 176 Query: 82 PMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDEEYIESIIASTPTGMFTDRDIY 141 P H K ++IDK+ + N+ F + DN L E I+ S G+F R I Sbjct: 177 PYHWFKVNWIDKAETK------NMLYLHFDMDDNLSLSEN-IKKRYRSQYQGVFYQRYIQ 229 Query: 142 GKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNKY 201 G W AEG+VY F + H + +K KY VD+G ++ ++ +D G Y Sbjct: 230 GLWTVAEGIVYDMFSKDKHVVSTLPEMSKL--GKYVSVDYGTQNATVFLLWEKDIIGKYY 287 Query: 202 VIEEHAHRHKE----------IDDWVA-IAKGVIKRHGDILFYCDTARPEHIERFRREKI 250 + E+ + ++ DD A + I R D + I ++ Sbjct: 288 LTREYYYSGRDENVQKTNAEYADDLTAWLGDTNIDR-----IIIDPSAASFIAELKKRGY 342 Query: 251 KARYADKAVIAGIEVISRLFKLNKMFIIKEKVSLFKEEIYNYVWKDNA-----DEPVKLN 305 K + A V+ GI + + K+ + + V+ K E + YVW + A D+P+K Sbjct: 343 KIKKARNNVLEGIRFVGSMLGQEKIAVHESCVNTLK-EFHAYVWDEKASANGEDKPIKQF 401 Query: 306 DDTLDALRYAVYTA 319 D +DALRY YT Sbjct: 402 DHAMDALRYFCYTV 415 >gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958579;genbank:gi:41179257;genbank:GeneID :2717087 Length = 424 Score = 104 bits (259), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/310 (27%), Positives = 141/310 (45%), Gaps = 28/310 (9%) Query: 22 NKVYVFDGQNSDAWKKARGFTSAGAFLNEGTALHNMFIKEVFSRCSYKGARILIDTNPEN 81 N ++F G++ + +G T AG F +E + F+ + +RCS G+++ + NP Sbjct: 111 NFYFIFGGKDEASQDLVQGITLAGFFFDEVALMPQSFVNQATARCSVTGSKMWFNCNPSG 170 Query: 82 PMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDEEYIESIIASTPTGMFTDRDIY 141 P H K ++ID+ + + L I FT+ DN LD I +G+F R I Sbjct: 171 PFHWFKLNWIDQMKDKRA---LRI---HFTMHDNPSLDSVTINR-YERMYSGVFYQRYIQ 223 Query: 142 GKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNKY 201 G WV +EGV+Y +F + + E ++ Y D+G + + ++ + G Y Sbjct: 224 GLWVMSEGVIYDNFDKDTMVVNELP---NHFEKYYVSCDYGTLNPTAFLLWGRN-HGVWY 279 Query: 202 VIEEHAH------RHKEIDDWVAIAKGVIKRHGDIL--FYCDTARPEHIERFRREKIKAR 253 +++E+ + R K +++ K + GDI D + R+ K R Sbjct: 280 LVKEYYYSGRTTSRQKTDEEYCHDLKEFL---GDIRAEMIIDPSAASFSTTLRQNGFKVR 336 Query: 254 YADKAVIAGIEVISRLFKLNKMFIIKEKVSLFKEEIYNYVWKDNA-----DEPVKLNDDT 308 A V+ GI V K+ +LFK E+ +YVW D A D+PVK +D Sbjct: 337 KAKNDVLDGIRVTQTAMNEGKIKFSMNCPNLFK-ELASYVWDDKAAEHGEDKPVKQHDHA 395 Query: 309 LDALRYAVYT 318 DA+RY VYT Sbjct: 396 CDAMRYFVYT 405 >gi|11736|lcl|protein:vir:79016 Length: 417 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110720;genbank:gi:134287337;genbank:Ge neID:4955190 Length = 417 Score = 57.4 bits (137), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/264 (23%), Positives = 109/264 (41%), Gaps = 37/264 (14%) Query: 78 NPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDEEYIESIIA---STPTGM 134 NP + H +K+ Y D +I T N F+DE Y + P G Sbjct: 175 NPVSATHWIKRKYFDYKND-------DIFTHHSTYLQNRFIDEAYYRRMQMRKEQDPEGY 227 Query: 135 FTDRDIYG--KWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVDWGYEHYGSIMVV 192 +YG +W G + K++ + E F ++ + D+G+ H ++ + Sbjct: 228 ----KVYGLGEWGETGGAILKNYVIHEFPTESEYFDNMRLSQ-----DFGFNHANVVLRI 278 Query: 193 AEDFDGNKYVIEEHAHRHKEIDDWVAIAKGVIKRHGDILFYCDTARPEHIERFRREKIKA 252 DG Y+ E + + + IA I + YCD+A P+ I+ ++ KA Sbjct: 279 GFK-DGELYICNEIYAHEMDTSEIIKIANS-IGLEKTLFMYCDSAEPDRIKMWKSAGYKA 336 Query: 253 RYADK---AVIAGIEVISRLFKLNKMFIIKEKVSLFKEEIYNYVWKDN------ADEPVK 303 + K +V A I+ + +L ++ + + KE I + WK + DEPV+ Sbjct: 337 KGVKKGPGSVKAQIDYLKQL----RIHVHPSCTNTIKE-IQQWKWKQDERTGLYLDEPVE 391 Query: 304 LNDDTLDALRYAVYTANKPSGTGF 327 DD + ALRY++ K +G F Sbjct: 392 FMDDAMAALRYSIDNKLKNNGISF 415 >gi|16299|lcl|protein:vir:3027 Length: 375 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438140;genbank:gi:16271803;genbank:GeneID :929285 Length = 375 Score = 53.5 bits (127), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 58/138 (42%), Gaps = 12/138 (8%) Query: 21 GNK-VYVFDGQNSDAWKKARGFTSAGAFLNEGTALHNMFIKEVFSRCSYKGARI-LIDTN 78 GNK VY G ++ G + E LH FI+E F R R L D N Sbjct: 47 GNKRVYYKGGGKVNSVGAITGMSLGSVVFCEINLLHMDFIQECFRRTWAAKLRYHLADLN 106 Query: 79 PENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDEEYIESIIASTPTGMFT-D 137 P P HPV KD D R + +T+ DN L E ++II S + Sbjct: 107 PPAPQHPVIKDVFDVQNTRWT---------HWTMDDNPILTAERKQNIINSLKKNPYLYK 157 Query: 138 RDIYGKWVSAEGVVYKDF 155 RD+ G+ V +GV+Y F Sbjct: 158 RDVLGQRVMPQGVIYGLF 175 >gi|16025|lcl|protein:vir:9814 Length: 403 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795576;genbank:gi:28876345;genbank:GeneID :1257867 Length = 403 Score = 53.5 bits (127), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 58/138 (42%), Gaps = 12/138 (8%) Query: 21 GNK-VYVFDGQNSDAWKKARGFTSAGAFLNEGTALHNMFIKEVFSRCSYKGARI-LIDTN 78 GNK VY G ++ G + E LH FI+E F R R L D N Sbjct: 75 GNKRVYYKGGGKVNSVGAITGMSLGSVVFCEINLLHMDFIQECFRRTWAAKLRYHLADLN 134 Query: 79 PENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDEEYIESIIASTPTGMFT-D 137 P P HPV KD D R + +T+ DN L E ++II S + Sbjct: 135 PPAPQHPVIKDVFDVQNTRWT---------HWTMDDNPILTAERKQNIINSLKKNPYLYK 185 Query: 138 RDIYGKWVSAEGVVYKDF 155 RD+ G+ V +GV+Y F Sbjct: 186 RDVLGQRVMPQGVIYGLF 203 >gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: terminase, large subunit # Family: family:all:147 # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006983;genbank:gi:46401884;genbank:GeneID :2777679 Length = 438 Score = 50.1 bits (118), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 18/180 (10%) Query: 153 KDFKEKVHYIKEEE-FKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNK-YVIEEHAHRH 210 KD K H+ K++E F+T G+D GY +++ + +D + YV+EE+ Sbjct: 264 KDLKGMRHFFKDDEAFET------LLGIDVGYRDPTAVLTIKYHYDTDTYYVLEEYQQAE 317 Query: 211 KEIDDWVAIAKGVIKRHGDILFYCDTARPEHIERFRRE-KIKARYADKAVIAGIEVISRL 269 K A + I R+ + D+A + + E +I + A K+V+ G+ + L Sbjct: 318 KTTAQHAAYIQHCIDRYKVDRIFVDSAAAQFRQDLAYEHEIASAPAKKSVLDGLACLQAL 377 Query: 270 FKLNKMFIIKEKVSLFKEEIYNYVW-------KDNADEPVK-LNDDTLDALRYAVYTANK 321 F+ K+ I+ S + NY W K + ++P N DALRY +Y+ ++ Sbjct: 378 FQQGKI-IVDASCSSLIHALQNYKWDFQEGEEKLSREKPRHDANSHLCDALRYGIYSISR 436 >gi|6719|lcl|protein:vir:99411 Length: 447 # NCBI annotation: hypothetical protein # Family: family:all:32729 # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919076;genbank:gi:119757034;genbank:GeneI D:4606064 Length = 447 Score = 46.2 bits (108), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/234 (22%), Positives = 102/234 (43%), Gaps = 36/234 (15%) Query: 115 NTFLDEEYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKR 174 NT L + ++ I ++ ++G + +AEG+VY F + H +++ + ++ Sbjct: 218 NTLLPPDGLDKIRRQFKGTAREEQGLHGGFAAAEGLVYDAFTRQTH-VRDADDVRDRLAD 276 Query: 175 KYA--GVDWGYE-----------HYGSIMVVAEDFDGNKYV---IEEHAHRHKEIDDWVA 218 +A G D G+ H G +V + + ++ ++ ++D W+A Sbjct: 277 DWAMYGYDAGWNDPRVLLDIRKTHAGQFVVWDQFYKSESHLAELVDPDDALPADVDPWLA 336 Query: 219 -IAKG-VIKRHGDILFYCDTARPEHIERFRREKIKARYADKAVIAGIEVISRLFKLN--- 273 +G V H P HIE+FR+ A A+K++ GI+ + ++ Sbjct: 337 GRPRGRVYAEH----------EPAHIEQFRKANWPAVKAEKSLDGGIDHVRSRLAMDDEG 386 Query: 274 -KMFIIKEKVSLFKEEIYNYVWKDNADEPVKLNDDTLDALRYAVYTANKPSGTG 326 ++ ++ +E +Y K++ K D LDALRYA++T + P TG Sbjct: 387 RPGVLVTDRCGELIQEFLSY--KEDHVGTSKAQDHALDALRYALFT-HTPRDTG 437 >gi|7301|lcl|protein:vir:96238 Length: 447 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239566;genbank:gi:66395301;genbank:GeneID :5132787 Length = 447 Score = 43.9 bits (102), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 81/334 (24%), Positives = 152/334 (45%), Gaps = 54/334 (16%) Query: 15 NAVKIFGNKVYVFDG-QNSDAWKKARGFT-----SAGAF-LNEGTALHNMFIKEVFSRCS 67 N V++ V++F G N + K +G + A F LN+ T L + ++E Sbjct: 123 NKVELPNGAVFLFKGLDNPEKIKSIKGISDIVMEEASEFTLNDYTQL-TLRLRER----K 177 Query: 68 YKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE---EYIE 124 + +I + NP + ++ V K Y + G+ + N + +++ DN FLDE + +E Sbjct: 178 HVNKQIFLMFNPVSKLNWVYK-YFFEHGEPMENVMIRQSSYR----DNKFLDEMTRQNLE 232 Query: 125 SIIASTPTGMFTDRDIY--GKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVDWG 182 + P IY G++ + + +V+ +++++ I ++E + Y G+D+G Sbjct: 233 LLANRNPAYY----KIYALGEFATLDKLVFPKYEKRL--INKDELRHLP---SYFGLDFG 283 Query: 183 YEHYGSIMVVAE-DFDGNK-YVIEEHAHRHKEIDDWVAIAKGVIKRHGDIL--FYCDTAR 238 Y + S + ++ D K Y+IEE+ + ++D +A VIK+ G D+A Sbjct: 284 YVNDPSAFIHSKIDVKKKKLYIIEEYV-KQGMLNDEIA---NVIKQLGYAREEITADSAE 339 Query: 239 PEHIERFRREKIKARYADK----AVIAGIEVISRLFKLNKMFIIKEKVSLFKEEIYNYVW 294 + I R +K K +V+ G++ F + I+ E+ EE NY W Sbjct: 340 QKSIAELRNLGLKRILPTKKGKGSVVQGLQ-----FLMQFEIIVDERCFKTIEEFDNYTW 394 Query: 295 KDNAD------EPVKLNDDTLDALRYAVYTANKP 322 + + D EPV + +D+LRY+V +P Sbjct: 395 QKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRP 428 >gi|17691|lcl|protein:vir:9305 Length: 447 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803283;genbank:gi:29028593;genbank:GeneID :1258039 Length = 447 Score = 43.9 bits (102), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 81/334 (24%), Positives = 152/334 (45%), Gaps = 54/334 (16%) Query: 15 NAVKIFGNKVYVFDG-QNSDAWKKARGFT-----SAGAF-LNEGTALHNMFIKEVFSRCS 67 N V++ V++F G N + K +G + A F LN+ T L + ++E Sbjct: 123 NKVELPNGAVFLFKGLDNPEKIKSIKGISDIVMEEASEFTLNDYTQL-TLRLRER----K 177 Query: 68 YKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE---EYIE 124 + +I + NP + ++ V K Y + G+ + N + +++ DN FLDE + +E Sbjct: 178 HVNKQIFLMFNPVSKLNWVYK-YFFEHGEPMENVMIRQSSYR----DNKFLDEMTRQNLE 232 Query: 125 SIIASTPTGMFTDRDIY--GKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVDWG 182 + P IY G++ + + +V+ +++++ I ++E + Y G+D+G Sbjct: 233 LLANRNPAYY----KIYALGEFATLDKLVFPKYEKRL--INKDELRHLP---SYFGLDFG 283 Query: 183 YEHYGSIMVVAE-DFDGNK-YVIEEHAHRHKEIDDWVAIAKGVIKRHGDIL--FYCDTAR 238 Y + S + ++ D K Y+IEE+ + ++D +A VIK+ G D+A Sbjct: 284 YVNDPSAFIHSKIDVKKKKLYIIEEYV-KQGMLNDEIA---NVIKQLGYAKEEITADSAE 339 Query: 239 PEHIERFRREKIKARYADK----AVIAGIEVISRLFKLNKMFIIKEKVSLFKEEIYNYVW 294 + I R +K K +V+ G++ F + I+ E+ EE NY W Sbjct: 340 QKSIAELRNLGLKRILPTKKGKGSVVQGLQ-----FLMQFEIIVDERCFKTIEEFDNYTW 394 Query: 295 KDNAD------EPVKLNDDTLDALRYAVYTANKP 322 + + D EPV + +D+LRY+V +P Sbjct: 395 QKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRP 428 >gi|11622|lcl|protein:vir:78869 Length: 439 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468842;genbank:gi:157325434;genbank:Ge neID:5601865 Length = 439 Score = 43.9 bits (102), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 84/359 (23%), Positives = 137/359 (38%), Gaps = 72/359 (20%) Query: 6 GRELTLDKSNAVKIFGNKVYVFDGQNSDAWKKARGFTSAGAFLNEGTALHNMFIKEVFSR 65 G L + N K K+Y G ++ G + E LH FI+E F R Sbjct: 95 GDHLLIHSPNGPK----KIYYKGGGKVNSVGAITGMSLGTVTFLEINLLHKDFIEECFRR 150 Query: 66 CSYKGARI-LIDTNPENPMHPVKKDY--IDKSGQRLSNGRLNIKAFQFTLFDNTFLDEEY 122 R L + NP P HPV + + +KSG+ K +T DN L EE Sbjct: 151 TFAAKNRFHLAELNPPAPNHPVLEIFSNYEKSGR--------YKWRHWTAKDNPALSEER 202 Query: 123 IESIIASTP-TGMFTDRDIYGKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVDW 181 + I + RD YGK V +G++Y+ F + + I + E + I+ + G D Sbjct: 203 KQEIYNEVKHSSYLLQRDWYGKRVLQKGIIYETFDMQKNQIPKLE--GRPIEMVFFG-DG 259 Query: 182 GYEHYGSIMVVAEDFDGNKYVIEEHA------HRHKEIDDWVAIAK--GVIKRHG----- 228 G + V E YVI EHA ++ ++ + + G +K Sbjct: 260 GQQD----ATVCE-----CYVITEHAADGHYKYKFNQVASYYHSGRDTGEVKAGSTYAVE 310 Query: 229 --DILFYC------DTARPEHIE---RFRREKIKARYADKA---------------VIAG 262 + +C P I+ R+ RE+++ D A + G Sbjct: 311 IKQFIQWCMKEYEVPVNEPVFIDPACRWLREELEKVGVDTAGADNNAHDVIGKAQGIEVG 370 Query: 263 IEVISRLFKLNKMFIIKEKVSLFK-----EEIYNYVWKDNADEPVKLNDDTLDALRYAV 316 IE + L + ++++ + +EI YV +N+ +PV N+ +D RYA Sbjct: 371 IERMQSLLSERRYLLVEQPNDQYDHYSWLQEIGMYVRDENSGKPVDKNNHAMDTSRYAT 429 >gi|9829|lcl|protein:vir:103950 Length: 425 # NCBI annotation: phage terminase large subunit # Family: family:all:54 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873987;genbank:gi:118430762;genbank:GeneI D:4525444 Length = 425 Score = 43.5 bits (101), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 81/334 (24%), Positives = 152/334 (45%), Gaps = 54/334 (16%) Query: 15 NAVKIFGNKVYVFDG-QNSDAWKKARGFT-----SAGAF-LNEGTALHNMFIKEVFSRCS 67 N V++ V++F G N + K +G + A F LN+ T L + ++E Sbjct: 101 NKVELPNGAVFLFKGLDNPEKIKSIKGISDIVMEEASEFTLNDYTQL-TLRLRER----K 155 Query: 68 YKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE---EYIE 124 + +I + NP + ++ V K Y + G+ + N + +++ DN FLDE + +E Sbjct: 156 HVNKQIFLMFNPVSKLNWVYK-YFFEHGEPMENVMIRQSSYR----DNKFLDEMTRQNLE 210 Query: 125 SIIASTPTGMFTDRDIY--GKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVDWG 182 + P IY G++ + + +V+ +++++ I ++E + Y G+D+G Sbjct: 211 LLANRNPAYY----KIYALGEFATLDKLVFPKYEKRL--INKDELRHLP---SYFGLDFG 261 Query: 183 YEHYGSIMVVAE-DFDGNK-YVIEEHAHRHKEIDDWVAIAKGVIKRHGDIL--FYCDTAR 238 Y + S + ++ D K Y+IEE+ + ++D +A VIK+ G D+A Sbjct: 262 YVNDPSAFIHSKIDVKKKKLYIIEEYV-KQGMLNDEIA---NVIKQLGYAKEEITADSAE 317 Query: 239 PEHIERFRREKIKARYADK----AVIAGIEVISRLFKLNKMFIIKEKVSLFKEEIYNYVW 294 + I R +K K +V+ G++ F + I+ E+ EE NY W Sbjct: 318 QKSIAELRNLGLKRILPTKKGKGSVVQGLQ-----FLMQFEIIVDERCFKTIEEFDNYTW 372 Query: 295 KDNAD------EPVKLNDDTLDALRYAVYTANKP 322 + + D EPV + +D+LRY+V +P Sbjct: 373 QKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRP 406 >gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: putative large subunit terminase # Family: family:all:54 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223885;genbank:gi:62327097;genbank:GeneID :5075541 Length = 440 Score = 43.5 bits (101), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 63/264 (23%), Positives = 116/264 (43%), Gaps = 41/264 (15%) Query: 72 RILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDEEYIESI---IA 128 + +I NP + H +K ++ D +R + +A T DN L+ +Y++S+ + Sbjct: 173 QTVITFNPWSDRHWLKHEFFDDKTKRNHS-----RAITTTYKDNDHLNADYVDSLKEMLV 227 Query: 129 STPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKR--KYAGVDWGYEH- 185 P + G+W AEG+V+ E + +F +I K G+D+G++H Sbjct: 228 RNPNRARVA--VLGEWGIAEGLVFDGLFE------QRDFSYDEIANLPKSVGLDFGFKHD 279 Query: 186 --YGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWVAIAKGVIKRHG-DILFYCDTARPEHI 242 G + V +D + Y+ +E +H + IA+ + K + D+A I Sbjct: 280 PTAGEFIAVDQD-NRIVYIYDEFYKQHLLTNQ---IAQELAKHKAFGLPITADSAEQRMI 335 Query: 243 ----ERFRREKIKARYADK-AVIAGIEVISRLFKLNKMFIIKEKVSLFKEEIYNYVWKDN 297 ++ R IK K +VI GI+ + + F++ +V EE YV+ + Sbjct: 336 VELSQQHRVPNIKPSGKGKDSVIQGIQYMQ-----SYRFVVHPRVKGLMEEFNTYVYDMD 390 Query: 298 -----ADEPVKLNDDTLDALRYAV 316 ++P N+ +DALRYA+ Sbjct: 391 KEGNWLNKPKDANNHAIDALRYAL 414 >gi|7643|lcl|protein:vir:96370 Length: 447 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239642;genbank:gi:66395379;genbank:GeneID :5132846 Length = 447 Score = 43.1 bits (100), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 81/334 (24%), Positives = 152/334 (45%), Gaps = 54/334 (16%) Query: 15 NAVKIFGNKVYVFDG-QNSDAWKKARGFT-----SAGAF-LNEGTALHNMFIKEVFSRCS 67 N V++ V++F G N + K +G + A F LN+ T L + ++E Sbjct: 123 NKVELPNGAVFLFKGLDNPEKIKSIKGISDIVMEEASEFTLNDYTQL-TLRLRER----K 177 Query: 68 YKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE---EYIE 124 + +I + NP + ++ V K Y + G+ + N + +++ DN FLDE + +E Sbjct: 178 HVNKQIFLMFNPVSKLNWVYK-YFFEHGEPMENVMIRQSSYR----DNKFLDEMTRQNLE 232 Query: 125 SIIASTPTGMFTDRDIY--GKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVDWG 182 + P IY G++ + + +V+ +++++ I ++E + Y G+D+G Sbjct: 233 LLANRNPAYY----KIYALGEFSTLDKLVFPKYEKRL--INKDELRHLP---SYFGLDFG 283 Query: 183 YEHYGSIMVVAE-DFDGNK-YVIEEHAHRHKEIDDWVAIAKGVIKRHGDIL--FYCDTAR 238 Y + S + ++ D K Y+IEE+ + ++D +A VIK+ G D+A Sbjct: 284 YVNDPSAFIHSKIDVKKKKLYIIEEYV-KQGMLNDEIA---NVIKQLGYAKEEITADSAE 339 Query: 239 PEHIERFRREKIKARYADK----AVIAGIEVISRLFKLNKMFIIKEKVSLFKEEIYNYVW 294 + I R +K K +V+ G++ F + I+ E+ EE NY W Sbjct: 340 QKSIAELRNLGLKRILPTKKGKGSVVQGLQ-----FLMQFEIIVDERCFKTIEEFDNYTW 394 Query: 295 KDNAD------EPVKLNDDTLDALRYAVYTANKP 322 + + D EPV + +D+LRY+V +P Sbjct: 395 QKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRP 428 >gi|11588|lcl|protein:vir:78831 Length: 447 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285355;genbank:gi:148717883;genbank:Ge neID:5246962 Length = 447 Score = 43.1 bits (100), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 81/334 (24%), Positives = 152/334 (45%), Gaps = 54/334 (16%) Query: 15 NAVKIFGNKVYVFDG-QNSDAWKKARGFT-----SAGAF-LNEGTALHNMFIKEVFSRCS 67 N V++ V++F G N + K +G + A F LN+ T L + ++E Sbjct: 123 NKVELPNGAVFLFKGLDNPEKIKSIKGISDIVMEEASEFTLNDYTQL-TLRLRER----K 177 Query: 68 YKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE---EYIE 124 + +I + NP + ++ V K Y + G+ + N + +++ DN FLDE + +E Sbjct: 178 HVNKQIFLMFNPVSKLNWVYK-YFFEHGEPMENVMIRQSSYR----DNKFLDEMTRQNLE 232 Query: 125 SIIASTPTGMFTDRDIY--GKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVDWG 182 + P IY G++ + + +V+ +++++ I ++E + Y G+D+G Sbjct: 233 LLANRNPAYY----KIYALGEFSTLDKLVFPKYEKRL--INKDELRHLP---SYFGLDFG 283 Query: 183 YEHYGSIMVVAE-DFDGNK-YVIEEHAHRHKEIDDWVAIAKGVIKRHGDIL--FYCDTAR 238 Y + S + ++ D K Y+IEE+ + ++D +A VIK+ G D+A Sbjct: 284 YVNDPSAFIHSKIDVKKKKLYIIEEYV-KQGMLNDEIA---NVIKQLGYAKEEITADSAE 339 Query: 239 PEHIERFRREKIKARYADK----AVIAGIEVISRLFKLNKMFIIKEKVSLFKEEIYNYVW 294 + I R +K K +V+ G++ F + I+ E+ EE NY W Sbjct: 340 QKSIAELRNLGLKRILPTKKGKGSVVQGLQ-----FLMQFEIIVDERCFKTIEEFDNYTW 394 Query: 295 KDNAD------EPVKLNDDTLDALRYAVYTANKP 322 + + D EPV + +D+LRY+V +P Sbjct: 395 QKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRP 428 >gi|2779|lcl|protein:vir:99776 Length: 425 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004302;genbank:gi:122891756;genbank:Ge neID:4712331 Length = 425 Score = 42.4 bits (98), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 81/334 (24%), Positives = 151/334 (45%), Gaps = 54/334 (16%) Query: 15 NAVKIFGNKVYVFDG-QNSDAWKKARGFT-----SAGAF-LNEGTALHNMFIKEVFSRCS 67 N V + V++F G N + K +G + A F LN+ T L + ++E Sbjct: 101 NKVGLPNGAVFLFKGLDNPEKIKSIKGISDIVMEEASEFTLNDYTQL-TLRLRER----K 155 Query: 68 YKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE---EYIE 124 + +I + NP + ++ V K Y + G+ + N + +++ DN FLDE + +E Sbjct: 156 HVNKQIFLIFNPVSKLNWVYK-YFFEHGEPMENVMIRQSSYR----DNKFLDEMTRQNLE 210 Query: 125 SIIASTPTGMFTDRDIY--GKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVDWG 182 + P IY G++ + + +V+ +++++ I ++E + Y G+D+G Sbjct: 211 LLANRNPAYY----KIYALGEFATLDKLVFPKYEKRL--INKDELRHLP---SYFGLDFG 261 Query: 183 YEHYGSIMVVAE-DFDGNK-YVIEEHAHRHKEIDDWVAIAKGVIKRHGDIL--FYCDTAR 238 Y + S + ++ D K Y+IEE+ + ++D +A VIK+ G D+A Sbjct: 262 YVNDPSAFIHSKIDVKKKKLYIIEEYV-KQGMLNDEIA---NVIKQLGYAKEEITADSAE 317 Query: 239 PEHIERFRREKIKARYADK----AVIAGIEVISRLFKLNKMFIIKEKVSLFKEEIYNYVW 294 + I R +K K +V+ G++ F + I+ E+ EE NY W Sbjct: 318 QKSIAELRNLGLKRILPTKKGKGSVVQGLQ-----FLMQFEIIVDERCFKTIEEFDNYTW 372 Query: 295 KDNAD------EPVKLNDDTLDALRYAVYTANKP 322 + + D EPV + +D+LRY+V +P Sbjct: 373 QKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRP 406 >gi|5208|lcl|protein:vir:106641 Length: 446 # NCBI annotation: ORF005 # Family: family:all:54 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239489;genbank:gi:66395220;genbank:GeneID :4555795 Length = 446 Score = 42.4 bits (98), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 80/326 (24%), Positives = 144/326 (44%), Gaps = 50/326 (15%) Query: 15 NAVKIFGNKVYVFDG-QNSDAWKKARGFT-----SAGAF-LNEGTALHNMFIKEVFSRCS 67 N V++ V++F G N + K +G + A F LN+ T L + ++E Sbjct: 123 NKVELPNGAVFLFKGLDNPEKIKSIKGISDIVMEEASEFTLNDYTQL-TLRLRER----K 177 Query: 68 YKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE---EYIE 124 + +I + NP + ++ V K Y + G+ + N + +++ DN FLDE + +E Sbjct: 178 HMNKQIFLMFNPVSKLNWVYK-YFFEHGEPMENVMIRQSSYR----DNKFLDEMTRQNLE 232 Query: 125 SIIASTPTGMFTDRDIY--GKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVDWG 182 + P IY G++ + + +V+ +++++ I ++E Y G+D+G Sbjct: 233 LLANRNPAYY----KIYALGEFATLDKLVFPKYEKRI--ISDKEVGHLP---SYFGLDFG 283 Query: 183 YEHYGSIMV-VAEDFDGNK-YVIEEHAHRHKEIDDWVAIAKGVIKRHGDILFYCDTARPE 240 Y + S + V D D K YVI E+ + ++ + + I D+A + Sbjct: 284 YVNDPSAFIHVKIDNDNKKLYVISEYVKKGMLNNEIAQVINDLGYSKEKIT--ADSAEQK 341 Query: 241 HIERFRREKI----KARYADKAVIAGIEVISRLFKLNKMFIIKEKVSLFKEEIYNYVWKD 296 I + I A +V+AGI+ +S+ +I E+ EE NY WK Sbjct: 342 SIMEIKTNGIDRIVPAMKGKDSVMAGIQFVSQF-----DIVIDERCYKTIEEFDNYTWKK 396 Query: 297 NAD------EPVKLNDDTLDALRYAV 316 + + EPV + +DALRYAV Sbjct: 397 DKNTGEYYNEPVDTYNHCIDALRYAV 422 >gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950582;genbank:gi:119953777;genbank:GeneI D:5076831 Length = 432 Score = 37.7 bits (86), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/260 (22%), Positives = 115/260 (44%), Gaps = 33/260 (12%) Query: 72 RILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDEEYI---ESIIA 128 +I + NP + H +K + D+ ++ ++ A T N +LD++ I E + Sbjct: 166 QITVTFNPWSERHWLKSAFFDEDTRKK-----DVFADTTTYRVNEWLDQQDIDRYEDLWR 220 Query: 129 STPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVDWGYEHYGS 188 + P + G W AEG+V+++++ K I K+I AG+D+G+ H + Sbjct: 221 TNPRRAAVVAN--GDWGVAEGLVFENYEVKDFDIVS---TIKRIGETTAGLDFGFTHDPT 275 Query: 189 IMV-VAEDFDGNK-YVIEEHAHRHKEIDDWVAIAKGVIKR-HGDILFYCDTARPEHIERF 245 +A D + + ++ EH DD I K ++ + + D+A I Sbjct: 276 TFPRLAVDLEKKELWIYAEHYEHAMTTDD---IFKMIVDADMQNAVITADSAEQRLIAEL 332 Query: 246 R----REKIKARYADKAVIAGIEVISRLFKLNKMFIIKEKVSLFKEEIYNYVWKDNAD-- 299 + R + + ++ AGI+ + + K++I + EE Y++K + D Sbjct: 333 QAKGIRRLVPSIKGKGSINAGIDFMKQF----KIYIHPSCIKTI-EEFDTYIYKQDKDGK 387 Query: 300 ---EPVKLNDDTLDALRYAV 316 EP+ N+ +DA+RYA+ Sbjct: 388 WLNEPIDSNNHIIDAIRYAL 407 >gi|15353|lcl|protein:vir:9921 Length: 425 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795683;genbank:gi:28876465;genbank:GeneID :1257982 Length = 425 Score = 37.4 bits (85), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/229 (22%), Positives = 106/229 (46%), Gaps = 31/229 (13%) Query: 104 NIKAFQFTLFDNTFLDEEYIESI--IASTPTGMFTDRDIY--GKWVSAEGVVYKDFKEKV 159 N +Q T DN FLD+ E+I +A+ + IY G++ + + +++ + +++ Sbjct: 191 NTVVYQTTYKDNRFLDDVTRENIEELANRNEAYYK---IYALGQFATLDKLIFPKYDKQI 247 Query: 160 HYIKEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNK--YVIEEHAHRHKEIDDWV 217 + +++ + G+D+G+ + S ++ + D NK Y++EE+ ++ D Sbjct: 248 --LNKDKLSHLP---SFFGLDYGFINDPSALLHVKIDDANKKLYILEEYVRKNLTND--- 299 Query: 218 AIAKGVIKRHGDILFYCDTARPEHIERFRREKIK----ARYADKAVIAGIEVISRLFKLN 273 IA + D+ + + R + E+ ++++ R D G + + L Sbjct: 300 KIANAI----KDLGYAKEEIRGDSAEKKSNQELRNLGIPRMIDVTKGPGTVMQGIQYLLQ 355 Query: 274 KMFIIKEKVSLFKEEIYNYVWKDN------ADEPVKLNDDTLDALRYAV 316 +I+ E+ EE+ NY WK + +EPV + +DA+RYAV Sbjct: 356 YDWIVDERCVKTIEELENYTWKKDKKTNEYTNEPVDSYNHCIDAIRYAV 404 >gi|9289|lcl|protein:vir:97165 Length: 431 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239721;genbank:gi:66394878;genbank:GeneID :5130898 Length = 431 Score = 36.2 bits (82), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 63/262 (24%), Positives = 110/262 (41%), Gaps = 35/262 (13%) Query: 72 RILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE---EYIESIIA 128 +I + NP + H +K + D+ +L+N + ++ N +LD+ E E + Sbjct: 162 QITVTFNPWSERHWLKPTFFDEE-TKLNNTFSDTTTYRV----NEWLDKVDIERYEDLYI 216 Query: 129 STPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVDWGYEHYGS 188 P D G W AEG+V+ +FK + EE +T++I G+D+G+ + Sbjct: 217 KNPRRARIVCD--GDWGVAEGLVFDNFKVEDFDWFEEFKRTQEITH---GMDFGFSQDPT 271 Query: 189 IMV-VAEDFDGNK-YVIEEHAHRHKEIDDWVAIAKGVIKRH-GDILFYCD--TARPEHIE 243 +V D K ++ +EH + DD I + +IK+ GD+ D I Sbjct: 272 TVVSTVVDLKNKKLFIYDEHYKKAMLTDD---IKQMLIKKGLGDVDIAADYGAGGDRVIS 328 Query: 244 RFRREKI----KARYADKAVIAGIEVISRLFKLNKMFIIKEKVSLFKEEIYNYVWKDNAD 299 + + I KA ++ GI+ I II EE Y + + D Sbjct: 329 ELKSKGIKGIRKALKGANTILPGIQFIQGF-----EVIIHPSCEHAIEEFNTYTFDQDND 383 Query: 300 -----EPVKLNDDTLDALRYAV 316 +P+ N+ +DALRY++ Sbjct: 384 GKWLNKPIDANNHIIDALRYSL 405 >gi|5321|lcl|protein:vir:99534 Length: 422 # NCBI annotation: putative protein # Family: family:all:54 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958532;genbank:gi:41179314;genbank:GeneID :2717172 Length = 422 Score = 34.7 bits (78), Expect = 0.001, Method: Compositional matrix adjust. Identities = 62/274 (22%), Positives = 121/274 (44%), Gaps = 32/274 (11%) Query: 68 YKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDEEYIESI- 126 +K +I NP + ++ + + D S R + Q T DN FLDE+ I +I Sbjct: 156 HKQRQIFCMFNPVSKLNWTYQTWFDPSADY---DRSRVAIHQSTYKDNRFLDEDNIRTIE 212 Query: 127 -IASTPTGMFTDRDIY--GKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVDWGY 183 + +T + IY G++ + + +V+ F+ K ++ + Y G+D+G+ Sbjct: 213 ELKNTNPAYYK---IYTLGEFATLDKLVFPYFETKRLNPRDPKLLALN---DYFGLDYGF 266 Query: 184 -EHYGSIMVVAEDF-DGNKYVIEEHAHRHKEIDDWVAIAKGVIKRHGDILFYCDTARPEH 241 + M + D + YV++E + + + K + + + D+A + Sbjct: 267 INDPSAFMHIKLDMRNKTLYVMDEFVKKGLLNNQLAQVIKDM--GYSKEVITADSAEKKS 324 Query: 242 IERFRREKI-KARYADK---AVIAGIEVISRLFKLNKMFIIKEKVSLFKEEIYNYVW-KD 296 I +R+ I + R A K ++I GI+ + + FK +++ ++ EE+ NY + KD Sbjct: 325 IAEMKRDGIYRIRPALKGPDSIIQGIQFLQQ-FK----WVVDDRCVKTIEELQNYTYVKD 379 Query: 297 N-----ADEPVKLNDDTLDALRYAVYTANKPSGT 325 + P+ + +DA+RYAV N T Sbjct: 380 KKTDEYTNRPIDAYNHCIDAIRYAVEEENGHGST 413 >gi|155|lcl|protein:vir:77595 Length: 499 # NCBI annotation: terminase large subunit # Family: family:all:1730 # MgeID: mge:46 # MgeName: P22 # Cross-refs: genbank:acc:YP_063734;genbank:gi:51236724;genbank:GeneID :2944239 Length = 499 Score = 33.9 bits (76), Expect = 0.003, Method: Compositional matrix adjust. Identities = 55/234 (23%), Positives = 91/234 (38%), Gaps = 25/234 (10%) Query: 98 LSNGRLNIKAFQFTLFDNTFLDEEYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKE 157 L N + K T++D +E E IIAS P +R+ + + G + F+ Sbjct: 243 LKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPE---HEREARARGIPTMGSG-RIFQI 298 Query: 158 KVHYIKEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWV 217 IK + F+ D+G+ H + + + D D + + + A K+ ++ Sbjct: 299 PEETIKCQPFECPDHFYVIDAQDFGWNHPQAHIQLWWDKDADVFYL---ARVWKKSENTA 355 Query: 218 AIAKGVIKRHGDILFYCDTARPEHIERFRREKIKARYAD----------------KAVIA 261 A G +K + + E+ E++K +YAD +V + Sbjct: 356 VQAWGAVKSWANKIPVAWPHDGHQHEKGGGEQLKTQYADAGFSMLPDHATFPDGGNSVES 415 Query: 262 GIEVISRLFKLNKMFIIKEKVSLFKEEIYNYVWKDNADEPVKLNDDTLDALRYA 315 GI + L L F + F EE Y +D + VK NDD LDA RY Sbjct: 416 GISELRDLM-LEGRFKVFNTCEPFFEEFRLYH-RDENGKIVKTNDDVLDATRYG 467 >gi|18891|lcl|protein:vir:8847 Length: 482 # NCBI annotation: terminase # Family: family:all:1730 # MgeID: mge:158 # MgeName: PaP3 # Cross-refs: genbank:acc:NP_775255;genbank:gi:27476053;genbank:GeneID :2700601 Length = 482 Score = 33.5 bits (75), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 20/162 (12%) Query: 51 GTALHNMFI-----KEVFSRC----SYKGARILIDTNPENPMHPVKKDYIDKSGQRLSNG 101 GTA+ +++ K+++++C + G + + PE+ + + KD++ Q L G Sbjct: 166 GTAIDVIWLDEECPKDIYTQCVTRTATTGGIVYLTFTPEHGLTEIVKDFL----QDLKPG 221 Query: 102 RLNIKAFQFTLFDNTFLDEEYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHY 161 + I A + D L E E +++ R G + GVV+ +EK Sbjct: 222 QFLIHA---SWEDAPHLSPEVKEQLLSVYSPAERRMR-AEGIPMLGSGVVFPILEEK--- 274 Query: 162 IKEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNKYVI 203 E F + G+D G++H +I VA D + +KY + Sbjct: 275 FVCEPFDIPDHFHRIIGIDLGFDHPNAIACVAWDAEKDKYYL 316 >gi|8380|lcl|protein:vir:96782 Length: 408 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1629 # MgeName: phiHSIC # Cross-refs: genbank:acc:YP_224236;genbank:gi:62362371;genbank:GeneID :3345721 Length = 408 Score = 33.1 bits (74), Expect = 0.005, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 18/179 (10%) Query: 163 KEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNKYVIEEHAHR-HKEIDDWVAIAK 221 K E+ T + Y G+D+G+ + V +GN IE+ A + EID A Sbjct: 231 KVEQVNTNGWEGPYYGLDFGFSQDPTAGVKCW-LNGNDVYIEKEAGKVGLEIDH---TAD 286 Query: 222 GVIKRHG---DILFYCDTARPEHIERFRREKIKARYADKAVIAGIEVISRLFKLNKMFII 278 +IKR D Y D+ARPE I +R I +E + ++FI Sbjct: 287 YLIKRIDGIDDAKVYADSARPESISLLKRTGIPRIEGVPKWKGSVEDGVEWLRSKRIFID 346 Query: 279 KEKVSLFKEEIYNYVWKDN------ADEPVKLNDDTLDALRYA---VYTANKPSGTGFN 328 E KE Y Y +K + ++ V + +DA+RY + T + P T N Sbjct: 347 PECTETIKEFTY-YSYKTDRYTGEIKNQLVDAYNHYIDAIRYCFNDMITYSPPPKTDTN 404 >gi|13374|lcl|protein:vir:9262 Length: 517 # NCBI annotation: gp2 # Family: family:all:1730 # MgeID: mge:164 # MgeName: ST64T # Cross-refs: genbank:acc:NP_720326;genbank:gi:24371583;genbank:GeneID :955800 Length = 517 Score = 32.7 bits (73), Expect = 0.005, Method: Compositional matrix adjust. Identities = 55/234 (23%), Positives = 91/234 (38%), Gaps = 25/234 (10%) Query: 98 LSNGRLNIKAFQFTLFDNTFLDEEYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKE 157 L N + K T++D +E E IIAS P +R+ + + G + F+ Sbjct: 261 LKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPE---HEREARARGIPTMGSG-RIFQI 316 Query: 158 KVHYIKEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWV 217 IK + F+ D+G+ H + + + D D + + + A K+ ++ Sbjct: 317 PEETIKCQPFECPDHFYVIDAQDFGWNHPQAHIQLWWDKDADVFYL---ARVWKKSENTA 373 Query: 218 AIAKGVIKRHGDILFYCDTARPEHIERFRREKIKARYAD----------------KAVIA 261 A G +K + + E+ E++K +YAD +V + Sbjct: 374 VQAWGAVKSWANKIPVAWPHDGHQHEKGGGEQLKTQYADAGFSMLPEHATFPDGGNSVES 433 Query: 262 GIEVISRLFKLNKMFIIKEKVSLFKEEIYNYVWKDNADEPVKLNDDTLDALRYA 315 GI + L L F + F EE Y +D + VK NDD LDA RY Sbjct: 434 GIGELRDLM-LEGRFKVFNTCEPFFEEFRLYH-RDENGKIVKTNDDVLDATRYG 485 >gi|3300|lcl|protein:vir:100942 Length: 499 # NCBI annotation: Gp2 # Family: family:all:1730 # MgeID: mge:1509 # MgeName: ST104 # Cross-refs: genbank:acc:YP_006405;genbank:gi:46358697;genbank:GeneID :2777092 Length = 499 Score = 32.3 bits (72), Expect = 0.007, Method: Compositional matrix adjust. Identities = 55/234 (23%), Positives = 90/234 (38%), Gaps = 25/234 (10%) Query: 98 LSNGRLNIKAFQFTLFDNTFLDEEYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKE 157 L N + K T++D +E E IIAS P +R+ + + G + F+ Sbjct: 243 LKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPE---HEREARARGIPTMGSG-RIFQI 298 Query: 158 KVHYIKEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWV 217 IK + F+ D+G+ H + + + D D + + + A K+ ++ Sbjct: 299 PEETIKCQPFECPDHFYVIDAQDFGWNHPQAHIQLWWDKDADVFYL---ARVWKKSENTA 355 Query: 218 AIAKGVIKRHGDILFYCDTARPEHIERFRREKIKARYAD----------------KAVIA 261 A G +K + + E+ E++K +YAD +V + Sbjct: 356 VQAWGAVKSWANKIPVAWPHDGHQHEKGGGEQLKTQYADAGFSMLPDHATFPDGGNSVES 415 Query: 262 GIEVISRLFKLNKMFIIKEKVSLFKEEIYNYVWKDNADEPVKLNDDTLDALRYA 315 GI + L L F F EE Y +D + VK NDD LDA RY Sbjct: 416 GISELRDLM-LEGRFKAFNTCEPFFEEFRLYH-RDENGKIVKTNDDVLDATRYG 467 >gi|4938|lcl|protein:vir:94991 Length: 423 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:1547 # MgeName: KS7 # Cross-refs: genbank:acc:YP_224036;genbank:gi:62327323;genbank:GeneID :5176819 Length = 423 Score = 29.3 bits (64), Expect = 0.068, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 5/90 (5%) Query: 108 FQFTLFDNTFLDEEYIESIIASTPTGMFTDRDIYGKWVS-AEGVVYKDFKEKVHYIKEEE 166 Q + N FL E+Y++S+ + P G D I G++V+ G VY + + + +E Sbjct: 189 IQASTTSNPFLPEDYVQSLRDTYP-GQLIDAYIDGEFVNLTSGSVYYAYDRRKNSSRE-- 245 Query: 167 FKTKQIKRKYAGVDWGYEHYGSIMVVAEDF 196 + + Y G D+ H S + V ++ Sbjct: 246 -TIQPGETLYIGQDFNVGHMASTVYVQREY 274 >gi|1219|lcl|protein:vir:105519 Length: 475 # NCBI annotation: phage terminase large subunit # Family: family:all:1730 # MgeID: mge:1463 # MgeName: phiSG1 # Cross-refs: genbank:acc:YP_516188;genbank:gi:89885991;genbank:GeneID :3964379 Length = 475 Score = 29.3 bits (64), Expect = 0.072, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Query: 269 LFKLNKMFIIKEKVSLFKEEIYNYVWKDNADEPVKLNDDTLDALRYA 315 L + K + F E YN+ +D VK+ DD LDA+RYA Sbjct: 401 LMRRGKFKVFSGLRDFFDE--YNFYHRDEKSRIVKMRDDILDAVRYA 445 >gi|24686|lcl|protein:vir:79769 Length: 635 # NCBI annotation: terminase large subunit # Family: family:all:4877 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429607;genbank:gi:156564098;genbank:Ge neID:5525534 Length = 635 Score = 26.2 bits (56), Expect = 0.63, Method: Compositional matrix adjust. Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%) Query: 121 EYIESIIASTPTGMFTDRDIYGKWVSAEGVVY 152 E I+ I+ASTP+G RD Y KW Y Sbjct: 215 ERIKMIVASTPSGR---RDSYYKWCVGATKTY 243 >gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA maturation protein # Family: family:all:697 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_042010;swissprot:sw:p03694;genbank:gi:962 7482;goa:P03694;uniprot:P03694;genbank:GeneID:1261062 Length = 586 Score = 25.0 bits (53), Expect = 1.3, Method: Compositional matrix adjust. Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Query: 58 FIKEVFSRCSYKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNI 105 F+ E+ R + + I D P NP H + +GQ L+ R +I Sbjct: 110 FLSELKPRPGQRDSVISFDVGPANPDHSPSVKSVGITGQ-LTGSRADI 156 >gi|8730|lcl|protein:vir:96840 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240151;genbank:gi:66395816;genbank:GeneID :5133181 Length = 421 Score = 24.3 bits (51), Expect = 2.4, Method: Compositional matrix adjust. Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 28/222 (12%) Query: 111 TLFDNTFLDEEYIESIIASTPTGMFTDR-DIYGKWVSAEGVVYKDFKEKVHYIKEEEFKT 169 T DN F+ +++I+ A+ R + G+ + + V + + + + I +E F++ Sbjct: 199 TYLDNPFIAKQFIDEAEAAKERNELRYRWEYLGEAIGSGVVPFNNLQ--IEKIPDELFRS 256 Query: 170 KQIKRKYAGVDWGYEHYGSIMVVAEDFDGNK---YVIEEH---AHRHKEIDDWVAIAKGV 223 R VD+GY + V +D K Y ++E+ +++ W+ +KG Sbjct: 257 FDNIRN--AVDFGYAT-DPLAFVRWHYDKKKRVIYAVDEYYGVQISNRQFGKWLW-SKGY 312 Query: 224 IKRHGDILFYCDTARPEHIERFRREKIKARYADKAVIAGIEVI----SRLFKLNKMFIIK 279 + DI Y D+A P+ I+ R+E R K V G + + L L+ + I Sbjct: 313 --QSDDI--YADSAEPKSIDELRKEHGIKRI--KGVKKGPDSVEYGEQWLNDLDAIVIDP 366 Query: 280 EKVSLFKEEIYNYVWKDNADEPVKL-----NDDTLDALRYAV 316 + E N ++ + D VK ++ T+DA RYA+ Sbjct: 367 NRTPNIAREFENIDFETDKDGNVKPKLEDKDNHTIDATRYAL 408 >gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hypothetical protein ORF049 # Family: family:all:543 # MgeID: mge:1570 # MgeName: PA11 # Cross-refs: genbank:acc:YP_001294642;genbank:gi:149408208;genbank:Ge neID:5236998 Length = 535 Score = 23.5 bits (49), Expect = 3.7, Method: Compositional matrix adjust. Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 5/34 (14%) Query: 176 YAGVDWGYE-----HYGSIMVVAEDFDGNKYVIE 204 YA VD+ + Y +I+V+ D D N YV++ Sbjct: 351 YAAVDFAFSLSRQADYTAIVVIGIDCDNNIYVVD 384 >gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239799;genbank:gi:66395455;genbank:GeneID :5132903 Length = 553 Score = 23.1 bits (48), Expect = 5.2, Method: Compositional matrix adjust. Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 29/145 (20%) Query: 202 VIEEHAHRHKEIDDWVAIAK---GVIKRHGDILFYCDTARP---------------EHIE 243 +++E K I DW A+ G+ K D F D RP I+ Sbjct: 409 IVDEPTISPKHIIDWFLEAQKHYGLKKVIADN-FRMDLLRPLFEENDIDYEVVKNTRAIQ 467 Query: 244 RFRREKIKARYADKAVIAGIEVISRLFKLNKMFIIKEKVSLFKEEIYNYVWKDNADEPVK 303 +++ +A + +I G + R + N + K+ + + Y EPV+ Sbjct: 468 SLLAPRVEDMFAQQNIIFGDNPLMRWYTGN----VAVKIDKYGNKTYE------KKEPVR 517 Query: 304 LNDDTLDALRYAVYTANKPSGTGFN 328 D AL +A+Y A+ +G + Sbjct: 518 RKTDGFQALIHALYRADDLNGASLD 542 >gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892047;genbank:gi:33770510;interpro:IPR00 5021;uniprot:Q7Y413;genbank:GeneID:1732947 Length = 577 Score = 22.7 bits (47), Expect = 6.8, Method: Compositional matrix adjust. Identities = 11/27 (40%), Positives = 14/27 (51%) Query: 150 VVYKDFKEKVHYIKEEEFKTKQIKRKY 176 V Y+D EK+H K T IK K+ Sbjct: 297 VFYEDLVEKLHLAKTVPRMTNDIKTKH 323 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.320 0.138 0.410 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 165,147 Number of Sequences: 514 Number of extensions: 8234 Number of successful extensions: 104 Number of sequences better than 100.0: 47 Number of HSP's better than 100.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 16 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 50 length of query: 328 length of database: 206,069 effective HSP length: 72 effective length of query: 256 effective length of database: 169,061 effective search space: 43279616 effective search space used: 43279616 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 37 (18.9 bits)