Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 71 | Genbank acc : NC_007059 | Aclame index mge :1588

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 72

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|Aclame:protein:vir:95898\|NCBI_annot:ORF014\|genbank:acc:YP_240385;genbank:gi:66396054;genbank:Gen	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:95899\|NCBI_annot:ORF006\|genbank:acc:YP_240382;genbank:gi:66396046;genbank:Gen	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:95890\|NCBI_annot:ORF008\|genbank:acc:YP_240381;genbank:gi:66396048;genbank:Gen	Blast (e-value=0)
MTP	13	lcl\|Aclame:protein:vir:95960\|NCBI_annot:ORF023\|genbank:acc:YP_240392;genbank:gi:66396063;genbank:Gen	Blast (e-value=1e-107)
Sheath	NOT FOUND
Ad1	8	lcl\|Aclame:protein:vir:95891\|NCBI_annot:ORF051\|genbank:acc:YP_240387;genbank:gi:66396087;genbank:Gen	HHsearch (proba=100.00%)
Hc1	9	lcl\|Aclame:protein:vir:95896\|NCBI_annot:ORF049\|genbank:acc:YP_240388;genbank:gi:66396085;genbank:Gen	HHsearch (proba=100.00%)
Ne1	10	lcl\|Aclame:protein:vir:95894\|NCBI_annot:ORF046\|genbank:acc:YP_240389;genbank:gi:66396083;genbank:Gen	HHsearch (proba=100.00%)
Tc1	12	lcl\|Aclame:protein:vir:95961\|NCBI_annot:ORF032\|genbank:acc:YP_240391;genbank:gi:66396072;genbank:Gen	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:96262 protein:vir:95898 protein:vir:1239	ROSA 71 phi ETA	100 % 100 % 91 %
Portal	protein:vir:96266 protein:vir:95899 protein:vir:97447	ROSA 71 92	100 % 100 % 79 %
TermL	protein:vir:95890 protein:vir:96300 protein:vir:95058	71 ROSA X2	100 % 99 % 96 %
MTP	protein:vir:97420 protein:vir:97324 protein:vir:95960	92 52A 71	100 % 100 % 100 %
Ad1	protein:vir:96281 protein:vir:95891 protein:vir:93740	ROSA 71 55	100 % 100 % 98 %
Hc1	protein:vir:95896 protein:vir:97429 protein:vir:95069	71 92 X2	100 % 98 % 98 %
Ne1	protein:vir:95894 protein:vir:97327 protein:vir:1243	71 52A phi ETA	100 % 100 % 100 %
Tc1	protein:vir:95961 protein:vir:97421 protein:vir:94794	71 92 29	100 % 99 % 99 %