Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 13 lcl|NC_021318.1_cdsid_YP_008058287.1 HHsearch (proba=100.00%)
Portal 10 lcl|NC_021318.1_cdsid_YP_008058284.1 HHsearch (proba=100.00%)
TermL 9 lcl|NC_021318.1_cdsid_YP_008058283.1 Blast (e-value=0)
MTP 20 lcl|NC_021318.1_cdsid_YP_008058294.1 Blast (e-value=1e-109)
Sheath NOT FOUND
Ad1 15 lcl|NC_021318.1_cdsid_YP_008058289.1 HHsearch (proba=100.00%)
Hc1 17 lcl|NC_021318.1_cdsid_YP_008058291.1 HHsearch (proba=100.00%)
Ne1 18 lcl|NC_021318.1_cdsid_YP_008058292.1 HHsearch (proba=100.00%)
Tc1 19 lcl|NC_021318.1_cdsid_YP_008058293.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:2430
protein:vir:104085
protein:vir:4226
D29
Che12
L5
100 %
86 %
81 %
Portal protein:vir:2427
protein:vir:104082
protein:vir:4223
D29
Che12
L5
100 %
92 %
90 %
TermL protein:vir:2426
protein:vir:4222
protein:vir:104081
D29
L5
Che12
100 %
91 %
89 %
MTP protein:vir:2437
protein:vir:4232
protein:vir:104093
D29
L5
Che12
96 %
93 %
92 %
Ad1 protein:vir:2432
protein:vir:104088
protein:vir:4228
D29
Che12
L5
99 %
84 %
84 %
Hc1 protein:vir:2434
protein:vir:104090
protein:vir:4229
D29
Che12
L5
99 %
88 %
87 %
Ne1 protein:vir:2435
protein:vir:4230
protein:vir:104091
D29
L5
Che12
100 %
79 %
66 %
Tc1 protein:vir:2436
protein:vir:4231
protein:vir:104092
D29
L5
Che12
98 %
87 %
82 %