Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Phi-S1 | Genbank acc : NC_021062

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 47

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	34	lcl\|NC_021062.1_cdsid_YP_007869911.1	HHsearch (proba=100.00%)
Portal	32	lcl\|NC_021062.1_cdsid_YP_007869909.1	HHsearch (proba=100.00%)
TermL	46	lcl\|NC_021062.1_cdsid_YP_007869923.1	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	36	lcl\|NC_021062.1_cdsid_YP_007869913.1	HHsearch (proba=100.00%)
Hc3	37	lcl\|NC_021062.1_cdsid_YP_007869914.1	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:8885 protein:vir:94576 protein:vir:94711	gh-1 Berlin K1F	80 % 75 % 74 %
Portal	protein:vir:8883 protein:vir:94572 protein:vir:3361	gh-1 Berlin T3	78 % 68 % 66 %
TermL	protein:vir:8897 protein:vir:94726 protein:vir:99686	gh-1 K1F VP4	75 % 69 % 68 %
Ad3	protein:vir:8886 protein:vir:10451 protein:vir:94565	gh-1 phiA1122 Berlin	74 % 65 % 64 %
Hc3	protein:vir:8887 protein:vir:94583 protein:vir:3366	gh-1 Berlin T3	67 % 56 % 55 %