Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : S-RIP2 | Genbank acc : NC_020838

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 54

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	16	lcl\|NC_020838.1_cdsid_YP_007673162.1	HHsearch (proba=100.00%)
Portal	23	lcl\|NC_020838.1_cdsid_YP_007673169.1	HHsearch (proba=100.00%)
TermL	46	lcl\|NC_020838.1_cdsid_YP_007673192.1	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	15	lcl\|NC_020838.1_cdsid_YP_007673161.1	HHsearch (proba=100.00%)
Hc3	14	lcl\|NC_020838.1_cdsid_YP_007673160.1	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:100057 protein:vir:78739 protein:vir:1781	P-SSP7 Syn5 P60	69 % 41 % 36 %
Portal	protein:vir:100039 protein:vir:1785 protein:vir:78696	P-SSP7 P60 Syn5	69 % 53 % 52 %
TermL	protein:vir:100065 protein:vir:78718 protein:vir:10462	P-SSP7 Syn5 phiA1122	84 % 60 % 44 %
Ad3	protein:vir:100027 protein:vir:78741 protein:vir:1780	P-SSP7 Syn5 P60	47 % 42 % 37 %
Hc3	protein:vir:78703 protein:vir:100022 protein:vir:99677	Syn5 P-SSP7 VP4	30 % 29 % 28 %