Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : HTVC011P | Genbank acc : NC_020482

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 45

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	28	lcl\|NC_020482.1_cdsid_YP_007517790.1	HHsearch (proba=100.00%)
Portal	23	lcl\|NC_020482.1_cdsid_YP_007517785.1	HHsearch (proba=100.00%)
TermL	44	lcl\|NC_020482.1_cdsid_YP_007517806.1	Blast (e-value=1e-132)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	29	lcl\|NC_020482.1_cdsid_YP_007517791.1	HHsearch (proba=100.00%)
Hc3	30	lcl\|NC_020482.1_cdsid_YP_007517792.1	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:78739 protein:vir:100057 protein:vir:94711	Syn5 P-SSP7 K1F	33 % 31 % 31 %
Portal	protein:vir:1785 protein:vir:100039 protein:vir:3361	P60 P-SSP7 T3	40 % 39 % 38 %
TermL	protein:vir:100065 protein:vir:99686 protein:vir:94726	P-SSP7 VP4 K1F	44 % 43 % 42 %
Ad3	protein:vir:1780 protein:vir:100027 protein:vir:94565	P60 P-SSP7 Berlin	33 % 32 % 31 %
Hc3	protein:vir:99677 protein:vir:94713 protein:vir:8887	VP4 K1F gh-1	36 % 35 % 34 %