Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 38 lcl|NC_020198.1_cdsid_YP_007392345.1 HHsearch (proba=100.00%)
Portal 32 lcl|NC_020198.1_cdsid_YP_007392339.1 HHsearch (proba=100.00%)
TermL 31 lcl|NC_020198.1_cdsid_YP_007392338.1 Blast (e-value=0)
MTP 44 lcl|NC_020198.1_cdsid_YP_007392351.1 Blast (e-value=1e-147)
Sheath NOT FOUND
Ad1 41 lcl|NC_020198.1_cdsid_YP_007392348.1 HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 34 lcl|NC_020198.1_cdsid_YP_007392341.1 HHsearch (proba=100.00%)
Tc1 42 lcl|NC_020198.1_cdsid_YP_007392349.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ne1<->Ad1 7 3
Ne1<->Tc1 8 2


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:79246
protein:vir:99228
protein:vir:1991
Phage MP22
DMS3
Mu
99 %
99 %
49 %
Portal protein:vir:99232
protein:vir:79233
protein:vir:103860
DMS3
Phage MP22
D3112
99 %
98 %
78 %
TermL protein:vir:99234
protein:vir:103868
protein:vir:79222
DMS3
D3112
Phage MP22
99 %
96 %
36 %
MTP protein:vir:103876
protein:vir:99223
protein:vir:79254
D3112
DMS3
Phage MP22
100 %
96 %
56 %
Ad1 protein:vir:79253
protein:vir:99222
protein:vir:103846
Phage MP22
DMS3
D3112
100 %
100 %
67 %
Ne1 protein:vir:79225
protein:vir:99196
protein:vir:103841
Phage MP22
DMS3
D3112
99 %
99 %
72 %
Tc1 protein:vir:79247
protein:vir:99226
protein:vir:103883
Phage MP22
DMS3
D3112
94 %
94 %
71 %