Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 169 lcl|NC_019503.1_cdsid_YP_007004551.1 HHsearch (proba=100.00%)
Portal 164 lcl|NC_019503.1_cdsid_YP_007004546.1 HHsearch (proba=100.00%)
TermL 161 lcl|NC_019503.1_cdsid_YP_007004543.1 Blast (e-value=0)
MTP 163 lcl|NC_019503.1_cdsid_YP_007004545.1 Blast (e-value=5e-95)
Sheath 162 lcl|NC_019503.1_cdsid_YP_007004544.1 HHsearch (proba=100.00%)
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 157 lcl|NC_019503.1_cdsid_YP_007004539.1 HHsearch (proba=100.00%)
Hc2 158 lcl|NC_019503.1_cdsid_YP_007004540.1 HHsearch (proba=100.00%)
Tc2 159 lcl|NC_019503.1_cdsid_YP_007004541.1 HHsearch (proba=100.00%)
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:103463
protein:vir:7214
protein:vir:6901
RB32
T4
RB69
99 %
98 %
96 %
Portal protein:vir:103458
protein:vir:7208
protein:vir:6896
RB32
T4
RB69
100 %
100 %
89 %
TermL protein:vir:103455
protein:vir:7202
protein:vir:6893
RB32
T4
RB69
99 %
99 %
90 %
MTP protein:vir:103457
protein:vir:7207
protein:vir:6895
RB32
T4
RB69
99 %
99 %
88 %
Sheath protein:vir:103456
protein:vir:7206
protein:vir:6894
RB32
T4
RB69
98 %
98 %
83 %
Ad2 protein:vir:103451
protein:vir:7198
protein:vir:6889
RB32
T4
RB69
99 %
99 %
85 %
Hc2 protein:vir:103452
protein:vir:7199
protein:vir:6890
RB32
T4
RB69
100 %
100 %
90 %
Tc2 protein:vir:103453
protein:vir:7200
protein:vir:6891
RB32
T4
RB69
99 %
99 %
76 %