Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : LIMElight | Genbank acc : NC_019454

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 55

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	41	lcl\|NC_019454.1_cdsid_YP_007002894.1	HHsearch (proba=100.00%)
Portal	39	lcl\|NC_019454.1_cdsid_YP_007002892.1	HHsearch (proba=100.00%)
TermL	50	lcl\|NC_019454.1_cdsid_YP_007002903.1	Blast (e-value=1e-153)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	43	lcl\|NC_019454.1_cdsid_YP_007002896.1	HHsearch (proba=100.00%)
Hc3	44	lcl\|NC_019454.1_cdsid_YP_007002897.1	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:80213 protein:vir:78935 protein:vir:6324	LKA1 LKD16 phiKMV	36 % 36 % 36 %
Portal	protein:vir:6322 protein:vir:78942 protein:vir:80211	phiKMV LKD16 LKA1	36 % 34 % 32 %
TermL	protein:vir:78939 protein:vir:6335 protein:vir:80218	LKD16 phiKMV LKA1	48 % 48 % 47 %
Ad3	protein:vir:78929 protein:vir:6325 protein:vir:1780	LKD16 phiKMV P60	28 % 28 % 28 %
Hc3	protein:vir:80253 protein:vir:78957 protein:vir:6326	LKA1 LKD16 phiKMV	32 % 30 % 30 %