Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : P-HM1 | Genbank acc : NC_015280

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 241

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	120	lcl\|NC_015280.1_cdsid_YP_004322545.1	HHsearch (proba=100.00%)
Portal	116	lcl\|NC_015280.1_cdsid_YP_004322541.1	HHsearch (proba=100.00%)
TermL	113	lcl\|NC_015280.1_cdsid_YP_004322538.1	Blast (e-value=0)
MTP	115	lcl\|NC_015280.1_cdsid_YP_004322540.1	Blast (e-value=5e-38)
Sheath	114	lcl\|NC_015280.1_cdsid_YP_004322539.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	105	lcl\|NC_015280.1_cdsid_YP_004322530.1	HHsearch (proba=100.00%)
Hc2	106	lcl\|NC_015280.1_cdsid_YP_004322531.1	HHsearch (proba=100.00%)
Tc2	107	lcl\|NC_015280.1_cdsid_YP_004322532.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:103181 protein:vir:104549 protein:vir:104915	Syn9 P-SSM4 P-SSM2	68 % 66 % 65 %
Portal	protein:vir:106999 protein:vir:103177 protein:vir:104892	S-PM2 Syn9 P-SSM2	58 % 56 % 56 %
TermL	protein:vir:106989 protein:vir:104946 protein:vir:104536	S-PM2 P-SSM2 P-SSM4	71 % 70 % 67 %
MTP	protein:vir:106918 protein:vir:103176 protein:vir:104504	S-PM2 Syn9 P-SSM4	41 % 34 % 34 %
Sheath	protein:vir:106984 protein:vir:104858 protein:vir:104477	S-PM2 P-SSM2 P-SSM4	43 % 42 % 42 %
Ad2	protein:vir:104694 protein:vir:106985 protein:vir:103004	P-SSM2 S-PM2 Syn9	49 % 42 % 37 %
Hc2	protein:vir:106986 protein:vir:104476 protein:vir:104739	S-PM2 P-SSM4 P-SSM2	37 % 36 % 35 %
Tc2	protein:vir:103006 protein:vir:106987 protein:vir:104479	Syn9 S-PM2 P-SSM4	47 % 45 % 44 %