BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_015280.1_cdsid_YP_004322538.1 [gene=gp17] [protein=terminase DNA packaging enzyme large subunit] [protein_id=YP_004322538.1] [location=103143..104825] (560 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|20243|lcl|protein:vir:106989 Length: 548 # NCBI annotation: t... 836 0.0 gi|24012|lcl|protein:vir:104946 Length: 547 # NCBI annotation: T... 832 0.0 gi|22263|lcl|protein:vir:104536 Length: 550 # NCBI annotation: g... 798 0.0 gi|23408|lcl|protein:vir:103169 Length: 549 # NCBI annotation: g... 783 0.0 gi|28182|lcl|protein:vir:108053 Length: 611 # NCBI annotation: g... 380 e-107 gi|27123|lcl|protein:vir:6593 Length: 607 # NCBI annotation: ter... 371 e-104 gi|25348|lcl|protein:vir:80989 Length: 607 # NCBI annotation: gp... 370 e-104 gi|20804|lcl|protein:vir:106290 Length: 633 # NCBI annotation: g... 367 e-103 gi|27701|lcl|protein:vir:6893 Length: 611 # NCBI annotation: gp1... 363 e-102 gi|26943|lcl|protein:vir:5662 Length: 600 # NCBI annotation: ter... 362 e-102 gi|24596|lcl|protein:vir:98262 Length: 609 # NCBI annotation: gp... 359 e-101 gi|27407|lcl|protein:vir:7202 Length: 610 # NCBI annotation: gp1... 358 e-100 gi|22056|lcl|protein:vir:103455 Length: 610 # NCBI annotation: t... 357 e-100 gi|23191|lcl|protein:vir:101186 Length: 613 # NCBI annotation: t... 350 2e-98 gi|22942|lcl|protein:vir:101803 Length: 613 # NCBI annotation: g... 350 2e-98 gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: g... 336 5e-94 gi|16897|lcl|protein:vir:5867 Length: 508 # NCBI annotation: sim... 197 3e-52 gi|10766|lcl|protein:vir:78016 Length: 485 # NCBI annotation: te... 73 7e-15 gi|12256|lcl|protein:vir:79447 Length: 485 # NCBI annotation: ph... 73 9e-15 gi|1431|lcl|protein:vir:93626 Length: 530 # NCBI annotation: Bce... 51 4e-08 gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: t... 50 6e-08 gi|17621|lcl|protein:vir:816 Length: 568 # NCBI annotation: hypo... 45 3e-06 gi|25680|lcl|protein:vir:10116 Length: 568 # NCBI annotation: hy... 45 3e-06 gi|51|lcl|protein:vir:3295 Length: 568 # NCBI annotation: putati... 45 3e-06 gi|26240|lcl|protein:vir:2763 Length: 568 # NCBI annotation: hyp... 45 3e-06 gi|25849|lcl|protein:vir:9949 Length: 568 # NCBI annotation: hyp... 45 3e-06 gi|1476|lcl|protein:vir:104436 Length: 568 # NCBI annotation: pu... 45 3e-06 gi|24686|lcl|protein:vir:79769 Length: 635 # NCBI annotation: te... 41 4e-05 gi|4674|lcl|protein:vir:105593 Length: 543 # NCBI annotation: te... 39 2e-04 gi|4240|lcl|protein:vir:94734 Length: 469 # NCBI annotation: lar... 37 4e-04 gi|16385|lcl|protein:vir:3744 Length: 607 # NCBI annotation: orf... 35 0.003 gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: pu... 33 0.008 gi|19904|lcl|protein:vir:3781 Length: 607 # NCBI annotation: ter... 33 0.009 gi|3859|lcl|protein:vir:107748 Length: 532 # NCBI annotation: gp... 33 0.012 gi|18494|lcl|protein:vir:1636 Length: 469 # NCBI annotation: put... 32 0.014 gi|14676|lcl|protein:vir:2499 Length: 474 # NCBI annotation: put... 30 0.055 gi|7504|lcl|protein:vir:99915 Length: 478 # NCBI annotation: gp2... 30 0.066 gi|11877|lcl|protein:vir:79128 Length: 593 # NCBI annotation: te... 30 0.091 gi|14590|lcl|protein:vir:8098 Length: 515 # NCBI annotation: gp2... 30 0.097 gi|8126|lcl|protein:vir:102661 Length: 568 # NCBI annotation: te... 27 0.71 gi|10061|lcl|protein:vir:99071 Length: 537 # NCBI annotation: gp... 26 1.4 gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: put... 26 1.5 gi|25398|lcl|protein:vir:8929 Length: 717 # NCBI annotation: ORF... 25 1.7 gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: pu... 25 2.0 gi|14353|lcl|protein:vir:3149 Length: 554 # NCBI annotation: unk... 25 2.3 gi|27798|lcl|protein:vir:8408 Length: 214 # NCBI annotation: gp3... 25 3.0 gi|10294|lcl|protein:vir:105656 Length: 405 # NCBI annotation: p... 24 4.4 gi|8927|lcl|protein:vir:97005 Length: 632 # NCBI annotation: 40 ... 24 4.6 >gi|20243|lcl|protein:vir:106989 Length: 548 # NCBI annotation: terminase large subunit gp17 # Family: family:all:147 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195134;genbank:gi:58532911;uniprot:Q5GQN8 ;genbank:GeneID:3260486 Length = 548 Score = 836 bits (2160), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/544 (71%), Positives = 459/544 (84%) Query: 2 SQDFYLGNPNLKKVGTEIQFSKEQIQEYLKCKEDPVYFARNYIKIISLDEGIVPFDMWDF 61 S YLGNP LKK +I F+KEQ++E++KC DPVYF +NY+KI+SLDEG+VPF MWDF Sbjct: 3 SDQIYLGNPLLKKANVKIDFTKEQVKEWIKCANDPVYFTKNYVKIVSLDEGLVPFKMWDF 62 Query: 62 QEELIESFHENRFNIAKLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLLGR 121 QEELI FH+NRFNIAKLPRQTGKSTT VSYLLHY++FNDNVN+GILANK STARDLL R Sbjct: 63 QEELIMKFHKNRFNIAKLPRQTGKSTTVVSYLLHYLIFNDNVNIGILANKASTARDLLAR 122 Query: 122 LQLAYEQLPLWLQQGIVVYNKGSMELENGSKILAASTSASAVRGMSFNIIFLDEFAFIPN 181 L AYE LP W+QQG+VV+NKG++ELENGSKILAASTSASAVRGMSFNIIFLDEFAF+PN Sbjct: 123 LATAYENLPKWIQQGVVVWNKGNIELENGSKILAASTSASAVRGMSFNIIFLDEFAFVPN 182 Query: 182 HIAEQFFSSVYPTITSGTSTKVIIISTPNGMNHFYKLWVDAQKGRNGYAWSEVHWSKVPG 241 HIA+ FF+SVYPTITSG STKVIIISTP GMNHFYK+WVDA GRNGY + EVHWS+VPG Sbjct: 183 HIADSFFASVYPTITSGKSTKVIIISTPQGMNHFYKMWVDATNGRNGYTFHEVHWSQVPG 242 Query: 242 RDAKWKEQTIANTSERQFTQEFDCEFLGSVDTLITAAKLRTLTYDDPLTTNGSLDVYENP 301 RD KWKE+TI NTSERQFTQEF+CEFLGSVDTLI A+KL+ L ++DP+ N LD+YE P Sbjct: 243 RDEKWKEETIKNTSERQFTQEFECEFLGSVDTLIAASKLKALVFNDPIKRNKGLDIYEEP 302 Query: 302 VRDHDYIICVDVSRGLAQDYSAFVVIDITHAPWRLVAKYRDHDVRPMVYPNIIFNVATNY 361 +Y++ VDVSRG+ DYSAF++ DIT P+++V KYR+++++PM++PNII ++A +Y Sbjct: 303 KEKSEYLMTVDVSRGIGGDYSAFIIFDITTVPYKVVGKYRNNEIKPMLFPNIINDLARSY 362 Query: 362 NKAYVLTEVNDIGEAVSGSLFYDLEYENVLMCAMRGRAGQIVGQGFSGNKVQMGVKMSKT 421 N A+VL EVNDIG+ V+ L YDLEY NVLMCAMRGRAGQ+VGQGFSG+K Q+GVKMS T Sbjct: 363 NNAWVLCEVNDIGDQVASILNYDLEYPNVLMCAMRGRAGQLVGQGFSGSKTQLGVKMSIT 422 Query: 422 VKAQGCSNLKTLIEDDKLLVKDYNIVSELTTFIQNKQSFEADEGYNDDLVMCLVIFAWLV 481 VK GC+NLKT++E+DKL+ DY+I++ELTTFIQ KQSFEADEG++DDLVMC+VIFAWLV Sbjct: 423 VKKVGCANLKTIVEEDKLIFNDYDIINELTTFIQKKQSFEADEGFHDDLVMCMVIFAWLV 482 Query: 482 QQEYFKEMTDQDIRRRIYEEQKNAIEQDMAPFGFIDDGLEEEREIDSQGNIWRIDMNEEN 541 QQ+YFKEMTD DIR+RIY+EQKN IEQDMAPFGFI GLE E S G IW D E Sbjct: 483 QQDYFKEMTDNDIRQRIYDEQKNQIEQDMAPFGFITTGLEGEEGFVSDGTIWYGDTQENV 542 Query: 542 QEKW 545 W Sbjct: 543 GYMW 546 >gi|24012|lcl|protein:vir:104946 Length: 547 # NCBI annotation: T4-like DNA packaging large subunit terminase # Family: family:all:147 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214360;genbank:gi:61806000;genbank:GeneID :3294466 Length = 547 Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/556 (69%), Positives = 461/556 (82%), Gaps = 12/556 (2%) Query: 4 DFYLGNPNLKKVGTEIQFSKEQIQEYLKCKEDPVYFARNYIKIISLDEGIVPFDMWDFQE 63 + YLGNPNLKK T I+FSK+ I+E+LKCKEDPVYF RNYIKI+SLDEG+VPF+M+DFQE Sbjct: 3 EVYLGNPNLKKANTPIEFSKDNIREFLKCKEDPVYFTRNYIKIVSLDEGLVPFNMYDFQE 62 Query: 64 ELIESFHENRFNIAKLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLLGRLQ 123 +LI FHENRFNI K+PRQTGKSTTC+SYLLHY +FNDNVNV +LANK STARDLLGRLQ Sbjct: 63 KLITRFHENRFNICKMPRQTGKSTTCISYLLHYAVFNDNVNVAVLANKASTARDLLGRLQ 122 Query: 124 LAYEQLPLWLQQGIVVYNKGSMELENGSKILAASTSASAVRGMSFNIIFLDEFAFIPNHI 183 LAYE LP W+QQGI+ +NKGS+ELENGSKI A STS+SAVRG S+N+IFLDEFAFIPNHI Sbjct: 123 LAYENLPRWMQQGIISWNKGSLELENGSKISANSTSSSAVRGGSYNVIFLDEFAFIPNHI 182 Query: 184 AEQFFSSVYPTITSGTSTKVIIISTPNGMNHFYKLWVDAQKGRNGYAWSEVHWSKVPGRD 243 A+ FF+SVYPTITSG STKVII+STP GMNHFY++W D++KG++ Y ++VHWS+VPGRD Sbjct: 183 ADDFFASVYPTITSGQSTKVIIVSTPRGMNHFYRMWHDSEKGKSEYVATDVHWSEVPGRD 242 Query: 244 AKWKEQTIANTSERQFTQEFDCEFLGSVDTLITAAKLRTLTYDDPLTTNGSLDVYENPVR 303 +WKEQTIANTSE+QF EF+CEFLGSV+TLI AKLR L Y+ P T N LD+YE PV+ Sbjct: 243 EEWKEQTIANTSEQQFKIEFECEFLGSVNTLINPAKLRNLVYEAPKTRNAGLDIYETPVK 302 Query: 304 DHDYIICVDVSRGLAQDYSAFVVIDITHAPWRLVAKYRDHDVRPMVYPNIIFNVATNYNK 363 +H+YII VDV+RGL DYSAF+V D T P+++VAKYR+++++PM++PNII +VA YN Sbjct: 303 EHNYIITVDVARGLGNDYSAFIVFDTTEFPYKVVAKYRNNEIKPMLFPNIILDVAKGYNN 362 Query: 364 AYVLTEVNDIGEAVSGSLFYDLEYENVLMCAMRGRAGQIVGQGFSGNKVQMGVKMSKTVK 423 AY+L EVNDIG+ V+ L YDLEYENVLM +MRGRAGQIVGQGFSG K Q+GV+M+ VK Sbjct: 363 AYLLIEVNDIGDQVASILQYDLEYENVLMASMRGRAGQIVGQGFSGKKTQLGVRMTSAVK 422 Query: 424 AQGCSNLKTLIEDDKLLVKDYNIVSELTTFIQNKQSFEADEGYNDDLVMCLVIFAWLVQQ 483 GCSNLKT++EDDKLL DY I+SELTTF Q SFEA+EG NDDL MCLVIF+WLV Q Sbjct: 423 KLGCSNLKTMMEDDKLLTCDYEIISELTTFAQRHNSFEAEEGCNDDLAMCLVIFSWLVAQ 482 Query: 484 EYFKEMTDQDIRRRIYEEQKNAIEQDMAPFGFIDDGLEEEREIDSQGNIWRIDMNEENQE 543 +YFKEM+D DIR+RIYEEQKN IEQDMAPFGFI DGL++ +D G+ W Sbjct: 483 DYFKEMSDNDIRKRIYEEQKNQIEQDMAPFGFIADGLDDTSFVDKDGDTWH--------- 533 Query: 544 KWKLDEYGDMASLWDY 559 LDEYGD + +WDY Sbjct: 534 ---LDEYGDKSYMWDY 546 >gi|22263|lcl|protein:vir:104536 Length: 550 # NCBI annotation: gp17 # Family: family:all:147 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214662;genbank:gi:61806303;genbank:GeneID :3294591 Length = 550 Score = 798 bits (2061), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/558 (65%), Positives = 457/558 (81%), Gaps = 12/558 (2%) Query: 3 QDFYLGNPNLKKVGTEIQFSKEQIQEYLKCKEDPVYFARNYIKIISLDEGIVPFDMWDFQ 62 Q+ YLGNPNLKK QF+K+Q+ EY+KC +DPVYF R YI+I+SLDEG++PFDM++FQ Sbjct: 5 QEIYLGNPNLKKANVSTQFTKKQVAEYMKCAQDPVYFIRKYIRIVSLDEGVIPFDMYNFQ 64 Query: 63 EELIESFHENRFNIAKLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLLGRL 122 E+++ FH++RFNIAKLPRQ+GKST +YLL Y+LFN NVNV ILANK TAR++LGRL Sbjct: 65 EDMVTKFHQHRFNIAKLPRQSGKSTIVTAYLLWYVLFNANVNVAILANKAPTAREMLGRL 124 Query: 123 QLAYEQLPLWLQQGIVVYNKGSMELENGSKILAASTSASAVRGMSFNIIFLDEFAFIPNH 182 QL+YE LP W+QQGI+ +NKGS+ELENGSKILA+STSASAVRGMSFNIIFLDEFAF+PNH Sbjct: 125 QLSYENLPKWMQQGILGWNKGSLELENGSKILASSTSASAVRGMSFNIIFLDEFAFVPNH 184 Query: 183 IAEQFFSSVYPTITSGTSTKVIIISTPNGMNHFYKLWVDAQKGRNGYAWSEVHWSKVPGR 242 IAEQFF+SVYPTI+SG STKVIIISTP+GMN FYKLW DA++G N Y +EVHWS+VPGR Sbjct: 185 IAEQFFASVYPTISSGKSTKVIIISTPHGMNQFYKLWHDAERGANNYVATEVHWSQVPGR 244 Query: 243 DAKWKEQTIANTSERQFTQEFDCEFLGSVDTLITAAKLRTLTYDDPLTTNGSLDVYENPV 302 D KWK+QTI NTSE QF EF+CEFLGSVDTLIT +KLR + Y DP+ N L VYE+ Sbjct: 245 DDKWKQQTIENTSEAQFRVEFECEFLGSVDTLITPSKLRIMPYKDPIQENRGLAVYEHVQ 304 Query: 303 RDHDYIICVDVSRGLAQDYSAFVVIDITHAPWRLVAKYRDHDVRPMVYPNIIFNVATNYN 362 +H+YII VDVSRG+ DYSAF VID T P+++VA+Y+++ ++P+V+PN+I +VATNYN Sbjct: 305 ENHNYIITVDVSRGVGNDYSAFCVIDTTTVPYKVVARYKNNQIKPLVFPNLIVDVATNYN 364 Query: 363 KAYVLTEVNDIGEAVSGSLFYDLEYENVLMCAMRGRAGQIVGQGFSGNKVQMGVKMSKTV 422 AYVL EVNDIG V+ + YDLEYEN+LM +MRGRAGQ +GQGFSG K Q+G+KMS V Sbjct: 365 GAYVLCEVNDIGGQVADIIQYDLEYENLLMVSMRGRAGQQLGQGFSGKKTQLGIKMSTAV 424 Query: 423 KAQGCSNLKTLIEDDKLLVKDYNIVSELTTFIQNKQSFEADEGYNDDLVMCLVIFAWLVQ 482 K GCSNLK LIEDDKL+V+DY+ ++ELTTFIQ QSF+A++G NDDL MCLVIF+W+ Sbjct: 425 KQVGCSNLKALIEDDKLIVEDYDTIAELTTFIQKGQSFQAEDGCNDDLAMCLVIFSWMAM 484 Query: 483 QEYFKEMTDQDIRRRIYEEQKNAIEQDMAPFGFIDDGLEEEREIDSQGNIWRIDMNEENQ 542 Q YFKEM D D+R+RIYE+Q++ IEQDMAPFGF+ DGLEE++ D+QG++W+I Sbjct: 485 QPYFKEMHDNDVRQRIYEDQRDQIEQDMAPFGFVSDGLEEDQFQDAQGDVWQI------- 537 Query: 543 EKWKLDEYGDMASLWDYR 560 EYGD + +W+YR Sbjct: 538 -----AEYGDKSYMWEYR 550 >gi|23408|lcl|protein:vir:103169 Length: 549 # NCBI annotation: gp123 # Family: family:all:147 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717790;genbank:gi:113200627;genbank:GeneI D:4239178 Length = 549 Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/555 (64%), Positives = 449/555 (80%), Gaps = 12/555 (2%) Query: 6 YLGNPNLKKVGTEIQFSKEQIQEYLKCKEDPVYFARNYIKIISLDEGIVPFDMWDFQEEL 65 YLGNPNLKK +F+ +Q+ E +KC E+PVYF +NYIKI+SLD+G++PFDM+ FQEE+ Sbjct: 7 YLGNPNLKKANVSQEFTPDQVAEVIKCSENPVYFIKNYIKIVSLDKGLIPFDMYYFQEEM 66 Query: 66 IESFHENRFNIAKLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLLGRLQLA 125 ++ FH+NRFNIAKLPRQ+GKST SYLL Y+LFN NVNV ILANK +TAR++L RLQL+ Sbjct: 67 VQKFHDNRFNIAKLPRQSGKSTIVTSYLLWYVLFNANVNVAILANKAATAREMLQRLQLS 126 Query: 126 YEQLPLWLQQGIVVYNKGSMELENGSKILAASTSASAVRGMSFNIIFLDEFAFIPNHIAE 185 YE LP WLQQGI+ +N+GS+ELENGSKILAASTSASAVRGMSFN+IFLDEFAF+PNH+A+ Sbjct: 127 YENLPKWLQQGILQWNRGSLELENGSKILAASTSASAVRGMSFNVIFLDEFAFVPNHVAD 186 Query: 186 QFFSSVYPTITSGTSTKVIIISTPNGMNHFYKLWVDAQKGRNGYAWSEVHWSKVPGRDAK 245 QFFSSVYPTI+SG STKVIIISTP+GMN FYKLW DA++ N Y +EVHWS+VPGRDA Sbjct: 187 QFFSSVYPTISSGKSTKVIIISTPHGMNMFYKLWHDAERKANEYIPTEVHWSEVPGRDAA 246 Query: 246 WKEQTIANTSERQFTQEFDCEFLGSVDTLITAAKLRTLTYDDPLTTNGSLDVYENPVRDH 305 WKEQTI NTSE+QF EF+CEFLGSVDTLI+ +KLRT+ Y DP+ L +YE ++ H Sbjct: 247 WKEQTIKNTSEQQFRVEFECEFLGSVDTLISPSKLRTMVYGDPIAEKNGLSMYEKTIQGH 306 Query: 306 DYIICVDVSRGLAQDYSAFVVIDITHAPWRLVAKYRDHDVRPMVYPNIIFNVATNYNKAY 365 Y+I DVSRG++ DYSAF+VID T P++LVAKYR++D++P+++PNII +VA NYN A+ Sbjct: 307 TYVITADVSRGVSGDYSAFLVIDTTTIPYKLVAKYRNNDIKPILFPNIIVDVARNYNHAF 366 Query: 366 VLTEVNDIGEAVSGSLFYDLEYENVLMCAMRGRAGQIVGQGFSGNKVQMGVKMSKTVKAQ 425 VL EVND+G V+ + YDLEY+N+LMCAMRGRAGQ +GQGFSG K QMG+KMS K Sbjct: 367 VLVEVNDVGGQVADIIQYDLEYDNLLMCAMRGRAGQQLGQGFSGKKTQMGIKMSSATKQV 426 Query: 426 GCSNLKTLIEDDKLLVKDYNIVSELTTFIQNKQSFEADEGYNDDLVMCLVIFAWLVQQEY 485 GCSNLK L+EDDK L+ DY+ +SELTTFIQ Q+F+A+EG NDDL MC+VIFAW+ Q Y Sbjct: 427 GCSNLKALLEDDKFLLNDYDCISELTTFIQKGQTFQAEEGCNDDLAMCMVIFAWMAMQPY 486 Query: 486 FKEMTDQDIRRRIYEEQKNAIEQDMAPFGFIDDGLEEEREIDSQGNIWRIDMNEENQEKW 545 FKE+ D D+R+RIY++Q+ AIEQDMAPFGF+DDGL EE D+QG++W Sbjct: 487 FKELHDNDVRQRIYDDQREAIEQDMAPFGFMDDGLGEEYFADAQGDVWMT---------- 536 Query: 546 KLDEYGDMASLWDYR 560 EYGD + +W+YR Sbjct: 537 --AEYGDKSYMWEYR 549 >gi|28182|lcl|protein:vir:108053 Length: 611 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595293;genbank:gi:161622599;genbank:Ge neID:5783772 Length = 611 Score = 380 bits (977), Expect = e-107, Method: Compositional matrix adjust. Identities = 204/527 (38%), Positives = 305/527 (57%), Gaps = 31/527 (5%) Query: 6 YLGNPNLKKVGTEIQFSKEQIQEYLKCKEDPVYFARNYIKIISLDEGIVPFDMWDFQEEL 65 Y+G PNLK+ + Q+++E + E+ KC++D VYFA Y I +D G + + D+Q ++ Sbjct: 87 YMGLPNLKRANIKTQWTREMVSEWKKCRDDIVYFAETYCAITHIDYGTIKVQLRDYQRDM 146 Query: 66 IESFHENRFNIAKLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLLGRLQLA 125 ++ +NR L RQ GK+T +L H++ FN + VGILA+K S + ++L R + A Sbjct: 147 LKIMSKNRMTTCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQA 206 Query: 126 YEQLPLWLQQGIVVYNKGSMELENGSKILAASTSASAVRGMSFNIIFLDEFAFIPNHIAE 185 E LP +LQ GIV +NKGS+EL+NGS I A ++S AVRG SF +I++DE AFIPN + Sbjct: 207 IELLPDFLQPGIVEWNKGSIELDNGSSIGAYASSPDAVRGNSFAMIYIDECAFIPNFLDS 266 Query: 186 QFFSSVYPTITSGTSTKVIIISTPNGMNHFYKLWVDAQKGRNGYAWSEVHWSKVPGR--- 242 ++ P I+SG +K+II +TPNG+NHFY +W A +G++G+A W+ V R Sbjct: 267 WL--AIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEGKSGFAPYTAIWNSVKERLYN 324 Query: 243 DA-------KWKEQTIANTSERQFTQEFDCEFLGSVDTLITAAKLRTLTYDDPLTTNGSL 295 DA +W QTI+ +S QF QE EF G+ TLI+ KL + + + + NG Sbjct: 325 DADIFDDGWEWSSQTISASSLAQFRQEHCAEFQGTSGTLISGMKLAIMDWKEVIPENGYF 384 Query: 296 DVYENPVRDHDYIICVDVSRGLAQDYSAFVVIDITHAPWRLVAKYRDHDVRPMVYPNIIF 355 + P H YI +D S G QDY A +ID+T W VA +++ M+ P+I++ Sbjct: 385 YRFHEPDPTHKYIASLDCSEGRGQDYHALHIIDVTTDEWEQVAVLHSNEISHMILPDIVY 444 Query: 356 NVATNYNKAYVLTEVNDIGEAVSGSLFYDLEYENVLMCAMRGRAGQIVGQGFSGNKVQMG 415 YN+A V E+N G +V+ SL+ DLEYENV+ +M+ +G Sbjct: 445 KYLMEYNEAPVYIELNSTGVSVAKSLYMDLEYENVICDSMQ----------------DLG 488 Query: 416 VKMSKTVKAQGCSNLKTLIEDDKLLVKDYNIVSELTTFIQNKQSFEADEGYNDDLVMCLV 475 +K ++ K GCS LK LIE DKL + + E TF QNK S+ A++G++DDLVM LV Sbjct: 489 MKQTRRTKPVGCSTLKDLIEKDKLKLNHKQTIMEFRTFSQNKLSWAAEDGFHDDLVMSLV 548 Query: 476 IFAWLVQQEYFKEMTDQDIRR---RIYEEQKNAIEQDMAPFGFIDDG 519 IFAWL Q+ F + D+D R ++ + + ++ P F+D G Sbjct: 549 IFAWLTTQQKFADFIDRDEMRLASEVFSRELEDMNEEYNPVVFVDAG 595 >gi|27123|lcl|protein:vir:6593 Length: 607 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891724;genbank:gi:33620526;genbank:GeneID :1725332 Length = 607 Score = 371 bits (952), Expect = e-104, Method: Compositional matrix adjust. Identities = 208/534 (38%), Positives = 301/534 (56%), Gaps = 34/534 (6%) Query: 6 YLGNPNLKKVGTEIQFSKEQIQEYLKCKEDPVYFARNYIKIISLDEGIVPFDMWDFQEEL 65 Y+ NL++ + Q++ E I E+ +C++D VYFA Y I +D G + + D+Q+++ Sbjct: 85 YMRLKNLRRANIKTQYTPEMIAEWKRCRKDIVYFAETYCAITHIDYGTIKVQLRDYQKDM 144 Query: 66 IESFHENRFNIAKLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLLGRLQLA 125 ++ HENR + KL RQ GK+T +L HY+ FN + VGILA+K S A ++L R + A Sbjct: 145 LKIMHENRMSAHKLSRQLGKTTAVAIFLAHYVCFNKDKAVGILAHKGSMAVEVLERTKQA 204 Query: 126 YEQLPLWLQQGIVVYNKGSMELENGSKILAASTSASAVRGMSFNIIFLDEFAFIPNHIAE 185 E LP +LQ GIV +NK S+ LENGS I A ++S AVRG SF+ I++DE AFI N Sbjct: 205 IELLPDFLQPGIVEWNKKSIVLENGSSIGAYASSPDAVRGNSFSFIYIDECAFIQNWT-- 262 Query: 186 QFFSSVYPTITSGTSTKVIIISTPNGMNHFYKLWVDAQKGRNGYAWSEVHWSKVPGR--- 242 F ++ P I+SG +K+I+ +TPNG+NHFY +W A G++GY E W V R Sbjct: 263 DCFLAIQPVISSGRESKMIMTTTPNGLNHFYDIWQSAIDGKSGYVPYEAVWHSVKERLYN 322 Query: 243 -------DAKWKEQTIANTSERQFTQEFDCEFLGSVDTLITAAKLRTLTYDDPLTTNGSL 295 +W Q IA +S QF QE + EF GS TLI A L L++ D + NG Sbjct: 323 KADIFDDGYEWSSQAIAGSSLEQFLQEHNAEFFGSSGTLIRATTLSRLSFIDVVNDNGFY 382 Query: 296 DVYENPVRDHDYIICVDVSRGLAQDYSAFVVIDITHAPWRLVAKYRDHDVRPMVYPNIIF 355 +E P Y+ +D S G QDY A +IDIT P++ VA Y + + P+I+F Sbjct: 383 Q-FEKPKEGRKYVATLDCSEGRGQDYHALQIIDITEFPYKQVAVYHSNTTSHFILPDIVF 441 Query: 356 NVATNYNKAYVLTEVNDIGEAVSGSLFYDLEYENVLMCAMRGRAGQIVGQGFSGNKVQMG 415 YN+ V E+N G +++ SL DLEY+N++ + + +G Sbjct: 442 KYLMMYNECPVYIELNSTGVSIAKSLAMDLEYDNIICDSF----------------IDLG 485 Query: 416 VKMSKTVKAQGCSNLKTLIEDDKLLVKDYNIVSELTTFIQNKQSFEADEGYNDDLVMCLV 475 +K SK KA GCS LK LIE DKL++ + EL TF + S+ A+EG++DDLVM LV Sbjct: 486 MKQSKRSKAMGCSALKDLIEKDKLIINHKGTIQELRTFSEKGVSWAAEEGFHDDLVMSLV 545 Query: 476 IFAWLVQQEYFKEMTDQD---IRRRIYEEQKNAIEQDMAPFGFID--DGLEEER 524 IF WL QE F E +D I I+ ++ + + ++ AP D +G+EE R Sbjct: 546 IFGWLTTQEKFAEYAGKDEMRIASEIFRKELDELGEEYAPVVIYDGANGIEEYR 599 >gi|25348|lcl|protein:vir:80989 Length: 607 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469498;genbank:gi:157311455;genbank:Ge neID:5602125 Length = 607 Score = 370 bits (951), Expect = e-104, Method: Compositional matrix adjust. Identities = 208/534 (38%), Positives = 301/534 (56%), Gaps = 34/534 (6%) Query: 6 YLGNPNLKKVGTEIQFSKEQIQEYLKCKEDPVYFARNYIKIISLDEGIVPFDMWDFQEEL 65 Y+ NL++ + Q++ E I E+ +C++D VYFA Y I +D G + + D+Q+++ Sbjct: 85 YMRLKNLRRANIKTQYTPEMIAEWKRCRKDIVYFAETYCAITHIDYGTIKVQLRDYQKDM 144 Query: 66 IESFHENRFNIAKLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLLGRLQLA 125 ++ HENR + KL RQ GK+T +L HY+ FN + VGILA+K S A ++L R + A Sbjct: 145 LKIMHENRMSAHKLSRQLGKTTAVAIFLAHYVCFNKDKAVGILAHKGSMAVEVLERTKQA 204 Query: 126 YEQLPLWLQQGIVVYNKGSMELENGSKILAASTSASAVRGMSFNIIFLDEFAFIPNHIAE 185 E LP +LQ GIV +NK S+ LENGS I A ++S AVRG SF+ I++DE AFI N Sbjct: 205 IELLPDFLQPGIVEWNKKSIVLENGSSIGAYASSPDAVRGNSFSFIYIDECAFIQNWT-- 262 Query: 186 QFFSSVYPTITSGTSTKVIIISTPNGMNHFYKLWVDAQKGRNGYAWSEVHWSKVPGR--- 242 F ++ P I+SG +K+I+ +TPNG+NHFY +W A G++GY E W V R Sbjct: 263 DCFLAIQPVISSGRESKMIMTTTPNGLNHFYDIWQSAIDGKSGYVPYEAVWHSVKERLYN 322 Query: 243 -------DAKWKEQTIANTSERQFTQEFDCEFLGSVDTLITAAKLRTLTYDDPLTTNGSL 295 +W Q IA +S QF QE + EF GS TLI A L L++ D + NG Sbjct: 323 KADIFDDGYEWSSQAIAGSSLEQFLQEHNAEFFGSSGTLIRATTLSRLSFIDVVNDNGFY 382 Query: 296 DVYENPVRDHDYIICVDVSRGLAQDYSAFVVIDITHAPWRLVAKYRDHDVRPMVYPNIIF 355 +E P Y+ +D S G QDY A +IDIT P++ VA Y + + P+I+F Sbjct: 383 Q-FEKPKEGRKYVATLDCSEGRGQDYHALQIIDITEFPYKPVAVYHSNTTSHFILPDIVF 441 Query: 356 NVATNYNKAYVLTEVNDIGEAVSGSLFYDLEYENVLMCAMRGRAGQIVGQGFSGNKVQMG 415 YN+ V E+N G +++ SL DLEY+N++ + + +G Sbjct: 442 KYLMMYNECPVYIELNSTGVSIAKSLAMDLEYDNIICDSF----------------IDLG 485 Query: 416 VKMSKTVKAQGCSNLKTLIEDDKLLVKDYNIVSELTTFIQNKQSFEADEGYNDDLVMCLV 475 +K SK KA GCS LK LIE DKL++ + EL TF + S+ A+EG++DDLVM LV Sbjct: 486 MKQSKRSKAMGCSALKDLIEKDKLIINHKGTIQELRTFSEKGVSWAAEEGFHDDLVMSLV 545 Query: 476 IFAWLVQQEYFKEMTDQD---IRRRIYEEQKNAIEQDMAPFGFID--DGLEEER 524 IF WL QE F E +D I I+ ++ + + ++ AP D +G+EE R Sbjct: 546 IFGWLTTQEKFAEYAGKDEMRIASEIFRKELDELGEEYAPVVIYDGANGIEEYR 599 >gi|20804|lcl|protein:vir:106290 Length: 633 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944105;genbank:gi:38640149;genbank:GeneID :2658038 Length = 633 Score = 367 bits (942), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/527 (37%), Positives = 305/527 (57%), Gaps = 31/527 (5%) Query: 6 YLGNPNLKKVGTEIQFSKEQIQEYLKCKEDPVYFARNYIKIISLDEGIVPFDMWDFQEEL 65 YLG PNLK+ ++++E ++E+ +C++D VYFA Y II +D G++ + D+Q+++ Sbjct: 111 YLGLPNLKRANVPTKWTREMVEEWKRCRDDIVYFAETYCSIIHIDWGVIKVQLRDYQKDM 170 Query: 66 IESFHENRFNIAKLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLLGRLQLA 125 + R ++ LPRQ GK+T +L H+++FN+ VG+LA+K ++++L R + + Sbjct: 171 LRIMASERMSMHNLPRQLGKTTATAIFLTHFVVFNEAKAVGVLAHKGDMSKEVLERTKQS 230 Query: 126 YEQLPLWLQQGIVVYNKGSMELENGSKILAASTSASAVRGMSFNIIFLDEFAFIPNHIAE 185 E LP +LQ GIV +NKG++ELENG I A ++S AVRG SF +I++DE AFI E Sbjct: 231 IELLPDFLQPGIVEWNKGNIELENGCSIGAYASSPDAVRGNSFALIYVDECAFIEGF--E 288 Query: 186 QFFSSVYPTITSGTSTKVIIISTPNGMNHFYKLWVDAQKGRNGYAWSEVHWSKVP----- 240 + ++ P I+SG +++I+ STPNG+NH+Y LW + K G+ W V Sbjct: 289 DTWKAILPVISSGRQSRIILTSTPNGINHWYDLWEVSLKSDKGFKPYTTTWITVKERLYD 348 Query: 241 GRDA-----KWKEQTIANTSERQFTQEFDCEFLGSVDTLITAAKLRTLTYDDPLTTNGSL 295 G DA +W + I ++S F QE C F+G+ TLI KL +T+ + + + Sbjct: 349 GSDAYDDGFEWASKQINSSSVEAFQQEHLCRFMGTSGTLINGFKLSKMTWKEVIADDNFY 408 Query: 296 DVYENPVRDHDYIICVDVSRGLAQDYSAFVVIDITHAPWRLVAKYRDHDVRPMVYPNIIF 355 + E PV + YI VD + G QDYS +ID+T P+R VA Y + + P++ P++I Sbjct: 409 QI-EKPVEGNKYIATVDPAEGRGQDYSTIQIIDVTSYPYRQVAVYHSNKISPLLLPSVIM 467 Query: 356 NVATNYNKAYVLTEVNDIGEAVSGSLFYDLEYENVLMCAMRGRAGQIVGQGFSGNKVQMG 415 A YN A+V E+N IG V+ SLF DLEYENV++ + + +G Sbjct: 468 RYAMEYNNAWVYIELNSIGNMVAKSLFIDLEYENVIVDSSK----------------DLG 511 Query: 416 VKMSKTVKAQGCSNLKTLIEDDKLLVKDYNIVSELTTFIQNKQSFEADEGYNDDLVMCLV 475 +K +K KA GCS LK LIE DKL+V + E TF++ S+ A +G++DDLVM L Sbjct: 512 MKQTKVTKAVGCSTLKDLIEKDKLIVSHKGTIQEFRTFVEKGVSWAAQDGFHDDLVMSLC 571 Query: 476 IFAWLVQQEYFKEMTD--QDIRRRIYEEQKNAIEQDMAPFGFIDDGL 520 IFA+L QE F + D ++I +++ + + +D IDDG+ Sbjct: 572 IFAYLTTQERFGDFIDATRNIGADVFQSEMEEMLEDFCVGAIIDDGI 618 >gi|27701|lcl|protein:vir:6893 Length: 611 # NCBI annotation: gp17 terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861869;genbank:gi:32453660;genbank:GeneID :1494295 Length = 611 Score = 363 bits (931), Expect = e-102, Method: Compositional matrix adjust. Identities = 196/525 (37%), Positives = 291/525 (55%), Gaps = 31/525 (5%) Query: 6 YLGNPNLKKVGTEIQFSKEQIQEYLKCKEDPVYFARNYIKIISLDEGIVPFDMWDFQEEL 65 Y+G PNLK+ + Q++ E + E+ KC++D VYFA Y I +D G + + D+Q ++ Sbjct: 87 YMGLPNLKRANIKTQWTYEMVAEWKKCRDDIVYFAETYCAITHIDYGTIKVQLRDYQRDM 146 Query: 66 IESFHENRFNIAKLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLLGRLQLA 125 ++ R + L RQ GK+T +L H++ FN + VGILA+K S + ++L R + A Sbjct: 147 LKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQA 206 Query: 126 YEQLPLWLQQGIVVYNKGSMELENGSKILAASTSASAVRGMSFNIIFLDEFAFIPNHIAE 185 E LP +LQ GIV +NKGS++L+NGS I A ++S AVRG SF +I++DE AFIPN I Sbjct: 207 IELLPDFLQPGIVEWNKGSIQLDNGSSIGAYASSPDAVRGNSFAMIYIDECAFIPNFIDS 266 Query: 186 QFFSSVYPTITSGTSTKVIIISTPNGMNHFYKLWVDAQKGRNGYAWSEVHWSKVPGR--- 242 ++ P I+SG +K+II +TPNG+NHFY +W A +G++G+ W+ V R Sbjct: 267 WL--AIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEGKSGFEPYTAIWNSVKERLYN 324 Query: 243 -------DAKWKEQTIANTSERQFTQEFDCEFLGSVDTLITAAKLRTLTYDDPLTTNGSL 295 +W +QTI+ +S QF QE F G+ TLI+ KL L Y + + Sbjct: 325 DEDIFDDGWQWSKQTISASSLTQFRQEHTAAFEGTSGTLISGMKLAILDYIEVTPDSHGF 384 Query: 296 DVYENPVRDHDYIICVDVSRGLAQDYSAFVVIDITHAPWRLVAKYRDHDVRPMVYPNIIF 355 ++ P H YI +D S G QDY A +ID+T W V + + ++ P+I+F Sbjct: 385 HQFKKPEEGHKYIATLDCSEGRGQDYHAMHIIDVTTDKWEQVGVLHSNTISHLILPDIVF 444 Query: 356 NVATNYNKAYVLTEVNDIGEAVSGSLFYDLEYENVLMCAMRGRAGQIVGQGFSGNKVQMG 415 YN+ + E+N G +V+ SL+ DLEYENV+ +M +G Sbjct: 445 KYLMEYNECPIYIELNSTGVSVAKSLYMDLEYENVICDSMN----------------DLG 488 Query: 416 VKMSKTVKAQGCSNLKTLIEDDKLLVKDYNIVSELTTFIQNKQSFEADEGYNDDLVMCLV 475 +K S+ K GCS LK LIE DKL + + E TF + S+ A+EGY+DDLVM LV Sbjct: 489 MKQSRRTKPVGCSTLKDLIEKDKLKINHRATIQEFRTFSEKGVSWAAEEGYHDDLVMGLV 548 Query: 476 IFAWLVQQEYFKEMTDQDIRR---RIYEEQKNAIEQDMAPFGFID 517 IF WL Q+ F + D+D R ++ + + D AP F+D Sbjct: 549 IFGWLSTQQKFADYADKDDMRLASEVFSRELQDMNDDYAPVIFVD 593 >gi|26943|lcl|protein:vir:5662 Length: 600 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899601;genbank:gi:34419588;genbank:GeneID :2546011 Length = 600 Score = 362 bits (928), Expect = e-102, Method: Compositional matrix adjust. Identities = 201/530 (37%), Positives = 306/530 (57%), Gaps = 27/530 (5%) Query: 6 YLGNPNLKKVGTEIQFS---KEQIQEYLKCKEDPVYFARNYIKIISLDEGIVPFDMWDFQ 62 Y+ PNL++ I+F E E+ KC++D VYFA NY I+ +D G + +Q Sbjct: 70 YMNIPNLRRANAPIRFGAPLSEIKAEFQKCRDDIVYFAENYCSIVHIDLGNIKMVPRPYQ 129 Query: 63 EELIESFHENRFNIAKLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLLGRL 122 +E++E +RF+I LPRQ GK+T +L HY++FN++ GILA+K S + ++L R+ Sbjct: 130 KEMLEVADRSRFSIFLLPRQLGKTTIMGIFLAHYLVFNEDKEAGILAHKGSMSMEVLERV 189 Query: 123 QLAYEQLPLWLQQGIVVYNKGSMELENGSKILAASTSASAVRGMSFNIIFLDEFAFIPNH 182 + E LP +LQ GI +NKG++ +NG K+ A ++ + AVRG SF++I++DE AF+P Sbjct: 190 KNVIENLPDFLQPGIEEWNKGNITFDNGCKLGAYASGSDAVRGKSFSMIYVDECAFVPGF 249 Query: 183 IAEQFFSSVYPTITSGTSTKVIIISTPNGMNHFYKLWVDAQKGRNGYAWSEVHWSKVPGR 242 + F+ + +P I+SG +KV++ STPNG+NH++ +W A +G + + W V R Sbjct: 250 --DDFWKATFPVISSGEESKVVLTSTPNGLNHYHDMWNAAVQGISTFEPYTTTWRAVQNR 307 Query: 243 DAK---------WKEQTIANTSERQFTQEFDCEFLGSVDTLITAAKLRTLTYDDPLTTNG 293 K +K +TI NTS F+QE C FLG+ TLI KL + D + + Sbjct: 308 LYKDGEFDDGEAFKRETIGNTSREAFSQEHLCNFLGTAGTLINGFKLSKMKGIDVVKDSD 367 Query: 294 SLDVYENPVRDHDYIICVDVSRGLAQDYSAFVVIDITHAPWRLVAKYRDHDVRPMVYPNI 353 VY+ P H YI+ VD S G QDY A +ID+T P+ VA + D+ ++ P I Sbjct: 368 GWCVYKKPEEGHKYILTVDTSEGRGQDYHALHMIDVTSYPFEQVAVFHDNKTSHLLLPAI 427 Query: 354 IFNVATNYNKAYVLTEVNDIGEAVSGSLFYDLEYENVLMCAMRGRAGQIVGQGFSGNKVQ 413 I A YN+AYV E+ GE V LF DLEYENV+ M RA SG + Sbjct: 428 IMKQAYRYNEAYVYCEIASTGELVMNELFRDLEYENVI---MEERA--------SGGRRG 476 Query: 414 MGVKMSKTVKAQGCSNLKTLIEDDKLLVKDYNIVSELTTFIQNKQSFEADEGYNDDLVMC 473 +G+K +K KA GCS LK LIE D+L + + E TF++ +S+EA+EG++DDLVM Sbjct: 477 LGLKPNKKTKAIGCSTLKDLIEKDQLKINHIPTLKEFHTFVEKGKSWEAEEGFHDDLVMS 536 Query: 474 LVIFAWLVQQEYFKEMTDQD--IRRRIYEEQKNAIEQDMAPFGFIDDGLE 521 L + A+L Q+ F + +++ + I++++ + + D PF I DG+E Sbjct: 537 LTLLAYLSTQDRFSDFVEKEYNVSYDIFKQEVHDMMDDDVPFLMIADGIE 586 >gi|24596|lcl|protein:vir:98262 Length: 609 # NCBI annotation: gp17 terminase subunit, nuclease and ATPase # Family: family:all:147 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239195;genbank:gi:66391670;genbank:GeneID :3416364 Length = 609 Score = 359 bits (922), Expect = e-101, Method: Compositional matrix adjust. Identities = 195/523 (37%), Positives = 296/523 (56%), Gaps = 34/523 (6%) Query: 6 YLGNPNLKKVGTEIQFSKEQIQEYLKCKEDPVYFARNYIKIISLDEGIVPFDMWDFQEEL 65 Y GNPNLK+ + +++KE + E++KC++D VYFA Y I +D G + + D+Q+E+ Sbjct: 85 YNGNPNLKRAYVQTKWTKEMLMEWVKCRDDIVYFAETYCAITHIDYGTIKVQLRDYQKEM 144 Query: 66 IESFHENRFNIAKLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLLGRLQLA 125 + H+NR L RQ GK+T +L H++ FN++ VG+LA+K S + ++L R + A Sbjct: 145 LIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKASMSAEVLDRTKQA 204 Query: 126 YEQLPLWLQQGIVVYNKGSMELENGSKILAASTSASAVRGMSFNIIFLDEFAFIPNHIAE 185 E LP +LQ GIV +NKGS+EL+N KI A ++S AVRG SF +I++DE AFIPN Sbjct: 205 IELLPDFLQPGIVEWNKGSIELDNKCKIGAFASSPDAVRGNSFAMIYIDECAFIPNFT-- 262 Query: 186 QFFSSVYPTITSGTSTKVIIISTPNGMNHFYKLWVDAQKGRNGYAWSEVHWSKVPGR--- 242 + ++ P I+SG +K++I +TPNG+NHFY +W A +G++G+ W+ V R Sbjct: 263 DAWLAIQPVISSGRKSKILITTTPNGLNHFYDIWNAAVEGKSGFVPYTAIWTSVKERLYT 322 Query: 243 ---------DAKWKEQTIANTSERQFTQEFDCEFLGSVDTLITAAKLRTLTYDDPLTTNG 293 W + IA +S+ F QE EF+G+ TLI+ KL +++ D T Sbjct: 323 DGDNGVFDDGYSWSAKMIAGSSKEAFLQEHCAEFMGTNGTLISGWKLSKMSWIDIDETET 382 Query: 294 SLDVYENPVRDHDYIICVDVSRGLAQDYSAFVVIDITHAPWRLVAKYRDHDVRPMVYPNI 353 + Y+ P H Y+ +D + G QDY A +IDIT P+ VA Y + ++ P+I Sbjct: 383 NFYQYKKPEEGHKYVAVLDPAEGRGQDYHAMHIIDITTLPFEQVAVYHSNRTSHLILPDI 442 Query: 354 IFNVATNYNKAYVLTEVNDIGEAVSGSLFYDLEYENVLMCAMRGRAGQIVGQGFSGNKVQ 413 + T YN+A++ E+N G +V+ SLF +LEYENV+ + Sbjct: 443 LLRYLTMYNEAWIYIELNSTGHSVAKSLFSELEYENVICDSYN----------------D 486 Query: 414 MGVKMSKTVKAQGCSNLKTLIEDDKLLVKDYNIVSELTTFIQNKQSFEADEGYNDDLVMC 473 +G+K +K KA GCS LK LIE DKL++ + + E TF + S+ A+EG++DDLVM Sbjct: 487 LGMKQTKRSKAIGCSTLKDLIEKDKLIINNKKTILEFRTFSEKGVSWAAEEGFHDDLVMS 546 Query: 474 LVIFAWLVQQEYFKEMTDQDIRRRIYE----EQKNAIEQDMAP 512 L F WL Q F E ++D R E E++ E + P Sbjct: 547 LACFGWLTTQLKFAEFCEKDDLRLANEVFAREREQLYEDALCP 589 >gi|27407|lcl|protein:vir:7202 Length: 610 # NCBI annotation: gp17 terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049776;genbank:gi:9632591;genbank:GeneID: 1258647 Length = 610 Score = 358 bits (918), Expect = e-100, Method: Compositional matrix adjust. Identities = 193/525 (36%), Positives = 291/525 (55%), Gaps = 31/525 (5%) Query: 6 YLGNPNLKKVGTEIQFSKEQIQEYLKCKEDPVYFARNYIKIISLDEGIVPFDMWDFQEEL 65 Y+G PNLK+ + Q+++E ++E+ KC++D VYFA Y I +D G++ + D+Q ++ Sbjct: 87 YMGLPNLKRANIKTQWTREMVEEWKKCRDDIVYFAETYCAITHIDYGVIKVQLRDYQRDM 146 Query: 66 IESFHENRFNIAKLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLLGRLQLA 125 ++ R + L RQ GK+T +L H++ FN + VGILA+K S + ++L R + A Sbjct: 147 LKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQA 206 Query: 126 YEQLPLWLQQGIVVYNKGSMELENGSKILAASTSASAVRGMSFNIIFLDEFAFIPNHIAE 185 E LP +LQ GIV +NKGS+EL+NGS I A ++S AVRG SF +I++DE AFIPN Sbjct: 207 IELLPDFLQPGIVEWNKGSIELDNGSSIGAYASSPDAVRGNSFAMIYIDECAFIPNF--H 264 Query: 186 QFFSSVYPTITSGTSTKVIIISTPNGMNHFYKLWVDAQKGRNGYAWSEVHWSKVPGR--- 242 + ++ P I+SG +K+II +TPNG+NHFY +W A +G++G+ W+ V R Sbjct: 265 DSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEGKSGFEPYTAIWNSVKERLYN 324 Query: 243 -------DAKWKEQTIANTSERQFTQEFDCEFLGSVDTLITAAKLRTLTYDDPLTTNGSL 295 +W QTI +S QF QE F G+ TLI+ KL + + + + Sbjct: 325 DEDIFDDGWQWSIQTINGSSLAQFRQEHTAAFEGTSGTLISGMKLAVMDFIEVTPDDHGF 384 Query: 296 DVYENPVRDHDYIICVDVSRGLAQDYSAFVVIDITHAPWRLVAKYRDHDVRPMVYPNIIF 355 ++ P D YI +D S G QDY A +ID+T W V + + ++ P+I+ Sbjct: 385 HQFKKPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWEQVGVLHSNTISHLILPDIVM 444 Query: 356 NVATNYNKAYVLTEVNDIGEAVSGSLFYDLEYENVLMCAMRGRAGQIVGQGFSGNKVQMG 415 YN+ V E+N G +V+ SL+ DLEYE V+ + +G Sbjct: 445 RYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVI----------------CDSYTDLG 488 Query: 416 VKMSKTVKAQGCSNLKTLIEDDKLLVKDYNIVSELTTFIQNKQSFEADEGYNDDLVMCLV 475 +K +K KA GCS LK LIE DKL++ + E TF + S+ A+EGY+DDLVM LV Sbjct: 489 MKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRTFSEKGVSWAAEEGYHDDLVMSLV 548 Query: 476 IFAWLVQQEYFKEMTDQDIRR---RIYEEQKNAIEQDMAPFGFID 517 IF WL Q F + D+D R ++ ++ + D AP F+D Sbjct: 549 IFGWLSTQSKFIDYADKDDMRLASEVFSKELQDMSDDYAPVIFVD 593 >gi|22056|lcl|protein:vir:103455 Length: 610 # NCBI annotation: terminase subunit nuclease and ATPase # Family: family:all:147 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803107;genbank:gi:116326387;genbank:GeneI D:4405484 Length = 610 Score = 357 bits (915), Expect = e-100, Method: Compositional matrix adjust. Identities = 192/525 (36%), Positives = 291/525 (55%), Gaps = 31/525 (5%) Query: 6 YLGNPNLKKVGTEIQFSKEQIQEYLKCKEDPVYFARNYIKIISLDEGIVPFDMWDFQEEL 65 Y+G PNLK+ + Q+++E ++E+ KC++D VYFA Y I +D G++ + D+Q ++ Sbjct: 87 YMGLPNLKRANIKTQWTREMVEEWKKCRDDIVYFAETYCAITHIDYGVIKVQLRDYQRDM 146 Query: 66 IESFHENRFNIAKLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLLGRLQLA 125 ++ R + L RQ GK+T +L H++ FN + VGILA+K S + ++L R + A Sbjct: 147 LKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQA 206 Query: 126 YEQLPLWLQQGIVVYNKGSMELENGSKILAASTSASAVRGMSFNIIFLDEFAFIPNHIAE 185 E LP +LQ GIV +NKGS+EL+NGS I A ++S AVRG SF +I++DE AFIPN Sbjct: 207 IELLPDFLQPGIVEWNKGSIELDNGSSIGAYASSPDAVRGNSFAMIYIDECAFIPNF--H 264 Query: 186 QFFSSVYPTITSGTSTKVIIISTPNGMNHFYKLWVDAQKGRNGYAWSEVHWSKVPGR--- 242 + ++ P I+SG +K+II +TPNG+NHFY +W A +G++G+ W+ V R Sbjct: 265 DSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEGKSGFEPYTAIWNSVKERLYN 324 Query: 243 -------DAKWKEQTIANTSERQFTQEFDCEFLGSVDTLITAAKLRTLTYDDPLTTNGSL 295 +W QTI ++ QF QE F G+ TLI+ KL + + + + Sbjct: 325 DEDIFDDGWQWSIQTINGSTLAQFRQEHTAAFEGTSGTLISGMKLAIMDFIEVTPDDHGF 384 Query: 296 DVYENPVRDHDYIICVDVSRGLAQDYSAFVVIDITHAPWRLVAKYRDHDVRPMVYPNIIF 355 ++ P D YI +D S G QDY A +ID+T W V + + ++ P+I+ Sbjct: 385 HRFKKPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWEQVGVLHSNTISHLILPDIVM 444 Query: 356 NVATNYNKAYVLTEVNDIGEAVSGSLFYDLEYENVLMCAMRGRAGQIVGQGFSGNKVQMG 415 YN+ V E+N G +V+ SL+ DLEYE V+ + +G Sbjct: 445 RYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVI----------------CDSYTDLG 488 Query: 416 VKMSKTVKAQGCSNLKTLIEDDKLLVKDYNIVSELTTFIQNKQSFEADEGYNDDLVMCLV 475 +K +K KA GCS LK LIE DKL++ + E TF + S+ A+EGY+DDLVM LV Sbjct: 489 MKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRTFSEKGVSWAAEEGYHDDLVMSLV 548 Query: 476 IFAWLVQQEYFKEMTDQDIRR---RIYEEQKNAIEQDMAPFGFID 517 IF WL Q F + D+D R ++ ++ + D AP F+D Sbjct: 549 IFGWLSTQSKFIDYADKDDMRLASEVFSKELQDMSDDYAPVIFVD 593 >gi|23191|lcl|protein:vir:101186 Length: 613 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932508;genbank:gi:37651634;genbank:GeneID :2610679 Length = 613 Score = 350 bits (899), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 201/552 (36%), Positives = 302/552 (54%), Gaps = 47/552 (8%) Query: 6 YLGNPNLKKVGTEIQFSKEQIQEYLKCKEDPVYFARNYIKIISLDEGIVPFDMWDFQEEL 65 YLG PNLK+ +I+++KE + E +CKED VYFA NY I +D GI+ + D+Q+++ Sbjct: 78 YLGLPNLKRANIKIKWTKEMLAERKRCKEDIVYFAENYCCIEHIDYGIIRVQLRDYQKDM 137 Query: 66 IESFHENRFNIAKLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLLGRLQLA 125 + NR A L RQ GK+T +L H++ FN NVGILA+K S + ++L R + A Sbjct: 138 LRIMAGNRLMAANLSRQLGKTTVVAIFLAHFVCFNSAKNVGILAHKASMSAEVLHRTKQA 197 Query: 126 YEQLPLWLQQGIVVYNKGSMELENGSKILAASTSASAVRGMSFNIIFLDEFAFIPNHIAE 185 E LP +LQ GIV +NKGS+ L NG I A S+S AVRG SF +I++DE AFIPN Sbjct: 198 LELLPDFLQPGIVEWNKGSITLGNGCAIGAFSSSPDAVRGNSFALIYVDEVAFIPNFT-- 255 Query: 186 QFFSSVYPTITSGTSTKVIIISTPNGMNHFYKLWVDA-------QKGRNGYAWSEVHWSK 238 + ++ P I+SG +K+++ +TPNG+NH+Y +W A ++G+ WS Sbjct: 256 DAWMAIQPVISSGRRSKILMTTTPNGLNHWYDIWTAAITPNSSGDGSKSGFVPYTATWSS 315 Query: 239 VPGR---DAK--------------WKEQTIANTSERQFTQEFDCEFLGSVDTLITAAKLR 281 V R D K W +TIA ++ F QE + F G+ TLI KL Sbjct: 316 VKERLYSDGKELSGSDSYFDDGYSWSSKTIAGSALDAFQQEHNTAFQGTSGTLINGTKLS 375 Query: 282 TLTYDDPLTTNGSLDVYENPVRDHDYIICVDVSRGLAQDYSAFVVIDITHAPWRLVAKYR 341 L + D + + ++E P YI +D + G QDY A + DIT P++ VA Y Sbjct: 376 KLNWID-IPPQDNFTMFEEPKEGRKYIATLDSAEGRGQDYHAMHIFDITEFPYKQVAVYH 434 Query: 342 DHDVRPMVYPNIIFNVATNYNKAYVLTEVNDIGEAVSGSLFYDLEYENVLMCAMRGRAGQ 401 + ++ P+++ Y + Y+ E+N G +++ SL+ +L+YENV+ + + Sbjct: 435 SNTTSHLILPDVLLKYLNMYFQPYIYIELNSTGVSIAKSLYSELDYENVICDSYQ----- 489 Query: 402 IVGQGFSGNKVQMGVKMSKTVKAQGCSNLKTLIEDDKLLVKDYNIVSELTTFIQNKQSFE 461 +G+K +K KA GCS LK LIE DKL++ + EL TF + S+ Sbjct: 490 -----------DLGLKQTKRSKAIGCSTLKDLIEKDKLILNHKKSIMELRTFSEKGVSWA 538 Query: 462 ADEGYNDDLVMCLVIFAWLVQQEYFKEMTDQDIRR---RIYEEQKNAIEQDMAPFGFIDD 518 A+EG++DDLVM LVIFAWL QE F + T+ D R ++ ++ + D P +DD Sbjct: 539 AEEGFHDDLVMSLVIFAWLTTQERFSDFTENDDMRLANEVFRKEMEELNDDYMPMVIVDD 598 Query: 519 GLEEEREIDSQG 530 G E+ E+ +G Sbjct: 599 G-EDTFEVTHKG 609 >gi|22942|lcl|protein:vir:101803 Length: 613 # NCBI annotation: gp17 # Family: family:all:147 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238880;genbank:gi:66391955;genbank:GeneID :3416630 Length = 613 Score = 350 bits (899), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 201/552 (36%), Positives = 302/552 (54%), Gaps = 47/552 (8%) Query: 6 YLGNPNLKKVGTEIQFSKEQIQEYLKCKEDPVYFARNYIKIISLDEGIVPFDMWDFQEEL 65 YLG PNLK+ +I+++KE + E +CKED VYFA NY I +D GI+ + D+Q+++ Sbjct: 78 YLGLPNLKRANIKIKWTKEMLAERKRCKEDIVYFAENYCCIEHIDYGIIRVQLRDYQKDM 137 Query: 66 IESFHENRFNIAKLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLLGRLQLA 125 + NR A L RQ GK+T +L H++ FN NVGILA+K S + ++L R + A Sbjct: 138 LRIMAGNRLMAANLSRQLGKTTVVAIFLAHFVCFNSAKNVGILAHKASMSAEVLHRTKQA 197 Query: 126 YEQLPLWLQQGIVVYNKGSMELENGSKILAASTSASAVRGMSFNIIFLDEFAFIPNHIAE 185 E LP +LQ GIV +NKGS+ L NG I A S+S AVRG SF +I++DE AFIPN Sbjct: 198 LELLPDFLQPGIVEWNKGSITLGNGCAIGAFSSSPDAVRGNSFALIYVDEVAFIPNFT-- 255 Query: 186 QFFSSVYPTITSGTSTKVIIISTPNGMNHFYKLWVDA-------QKGRNGYAWSEVHWSK 238 + ++ P I+SG +K+++ +TPNG+NH+Y +W A ++G+ WS Sbjct: 256 DAWMAIQPVISSGRRSKILMTTTPNGLNHWYDIWTAAITPNSSGDGSKSGFVPYTATWSS 315 Query: 239 VPGR---DAK--------------WKEQTIANTSERQFTQEFDCEFLGSVDTLITAAKLR 281 V R D K W +TIA ++ F QE + F G+ TLI KL Sbjct: 316 VKERLYSDGKELSGSDSYFDDGYSWSSKTIAGSALDAFQQEHNTAFQGTSGTLINGTKLS 375 Query: 282 TLTYDDPLTTNGSLDVYENPVRDHDYIICVDVSRGLAQDYSAFVVIDITHAPWRLVAKYR 341 L + D + + ++E P YI +D + G QDY A + DIT P++ VA Y Sbjct: 376 KLNWID-IPPQDNFTMFEEPKEGRKYIATLDSAEGRGQDYHAMHIFDITEFPYKQVAVYH 434 Query: 342 DHDVRPMVYPNIIFNVATNYNKAYVLTEVNDIGEAVSGSLFYDLEYENVLMCAMRGRAGQ 401 + ++ P+++ Y + Y+ E+N G +++ SL+ +L+YENV+ + + Sbjct: 435 SNTTSHLILPDVLLKYLNMYFQPYIYIELNSTGVSIAKSLYSELDYENVICDSYQ----- 489 Query: 402 IVGQGFSGNKVQMGVKMSKTVKAQGCSNLKTLIEDDKLLVKDYNIVSELTTFIQNKQSFE 461 +G+K +K KA GCS LK LIE DKL++ + EL TF + S+ Sbjct: 490 -----------DLGLKQTKRSKAIGCSTLKDLIEKDKLILNHKKSIMELRTFSEKGVSWA 538 Query: 462 ADEGYNDDLVMCLVIFAWLVQQEYFKEMTDQDIRR---RIYEEQKNAIEQDMAPFGFIDD 518 A+EG++DDLVM LVIFAWL QE F + T+ D R ++ ++ + D P +DD Sbjct: 539 AEEGFHDDLVMSLVIFAWLTTQERFSDFTENDDMRLANEVFRKEMEELNDDYMPMVIVDD 598 Query: 519 GLEEEREIDSQG 530 G E+ E+ +G Sbjct: 599 G-EDTFEVTHKG 609 >gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: gp17 terminase subunit # Family: family:all:147 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656379;genbank:gi:109290130;genbank:GeneI D:4156516 Length = 612 Score = 336 bits (861), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 194/552 (35%), Positives = 298/552 (53%), Gaps = 47/552 (8%) Query: 6 YLGNPNLKKVGTEIQFSKEQIQEYLKCKEDPVYFARNYIKIISLDEGIVPFDMWDFQEEL 65 Y G PNLK+ +I+++KE + E +CKED VYFA NY I +D GI+ + D+Q+++ Sbjct: 77 YNGLPNLKRANIKIKWTKEMLAERKRCKEDIVYFAENYCCIEHIDYGIIRVQLRDYQKDM 136 Query: 66 IESFHENRFNIAKLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLLGRLQLA 125 + NR A L RQ GK+T +L H++ FN NVGILA+K S + ++L R + A Sbjct: 137 LRIMAGNRLMAANLSRQLGKTTVVAIFLAHFVCFNSAKNVGILAHKASMSAEVLHRTKQA 196 Query: 126 YEQLPLWLQQGIVVYNKGSMELENGSKILAASTSASAVRGMSFNIIFLDEFAFIPNHIAE 185 E LP +LQ GIV +NKGS+ L NG I A S+S AVRG SF +I++DE AFIPN Sbjct: 197 LELLPDFLQPGIVEWNKGSITLGNGCAIGAFSSSPDAVRGNSFALIYIDEVAFIPNF--N 254 Query: 186 QFFSSVYPTITSGTSTKVIIISTPNGMNHFYKLWV-------DAQKGRNGYAWSEVHWSK 238 + ++ P I+SG +K+++ +TPNG+NH+Y +W D ++G+ WS Sbjct: 255 DAWLAIQPVISSGRHSKILMTTTPNGLNHWYDIWTAAITPNSDGSGSKSGFVPYTATWSS 314 Query: 239 VPGR-----------------DAKWKEQTIANTSERQFTQEFDCEFLGSVDTLITAAKLR 281 V R D + + + R F QE + F G+ TLI KL Sbjct: 315 VKERMYSDGSKTDGAIHILTTDILGQPRQSPVLALRAFQQEHNTAFQGTSGTLINGFKLS 374 Query: 282 TLTYDDPLTTNGSLDVYENPVRDHDYIICVDVSRGLAQDYSAFVVIDITHAPWRLVAKYR 341 +T+ + + + + +++ P+ H YI +D + G QDY A + DIT P+ VA Y Sbjct: 375 KMTWKE-VPASDNFTMFKEPIEGHKYIATLDSAEGRGQDYHAMHIYDITEFPYEQVAVYH 433 Query: 342 DHDVRPMVYPNIIFNVATNYNKAYVLTEVNDIGEAVSGSLFYDLEYENVLMCAMRGRAGQ 401 + ++ P+++ Y + Y+ E+N G +++ SL+ +LEYEN++ + Sbjct: 434 SNTTSHLILPDVLLKYLNMYYQPYIYIELNATGVSIAKSLYSELEYENIICDSYN----- 488 Query: 402 IVGQGFSGNKVQMGVKMSKTVKAQGCSNLKTLIEDDKLLVKDYNIVSELTTFIQNKQSFE 461 +G+K +K KA GCS LK LIE +KL++ + EL TF + S+ Sbjct: 489 -----------DLGMKQTKRSKAIGCSTLKDLIEKEKLVLYHKGTIMELRTFSEKGVSWA 537 Query: 462 ADEGYNDDLVMCLVIFAWLVQQEYFKEMTDQDIRR---RIYEEQKNAIEQDMAPFGFIDD 518 A++G++DDLVM LVIFAWL Q F + T++D R I+ ++ + D P +D Sbjct: 538 AEDGFHDDLVMSLVIFAWLTTQPRFSDFTERDDMRLANEIFRQEMENLYDDYTPVVIVDS 597 Query: 519 GLEEEREIDSQG 530 G EE E+ S G Sbjct: 598 G-EETFEVGSNG 608 >gi|16897|lcl|protein:vir:5867 Length: 508 # NCBI annotation: similar to terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835653;genbank:gi:30044056 Length = 508 Score = 197 bits (501), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 142/456 (31%), Positives = 220/456 (48%), Gaps = 40/456 (8%) Query: 27 QEYLKCKEDPVYFARNYIKIISLDEGIVPFDMWDFQEELIESFHENRFNIAKLPRQTGKS 86 QE KCK DP+YF R Y+KI + ++PFD++ QE+LI +H +R+ I + PRQ G + Sbjct: 9 QELEKCKNDPIYFIRKYVKIQHPIKRVIPFDLYPIQEKLINFYHTHRYVITEKPRQMGVT 68 Query: 87 TTCVSYLLHYILFNDNVNVGILANKLSTARDLLGRLQLAYEQLPLWLQQGIVVYNKGSME 146 V+Y LH ++FN N V I ANK +TA+++L R++ AYEQLP +LQ +NK +E Sbjct: 69 WCAVAYALHQMIFNSNYKVLIAANKEATAKNVLERIKFAYEQLPRFLQIKKRTWNKTYIE 128 Query: 147 LENGSKILAASTSASAVRGMSFNIIFLDEFAFIPNHIAEQFFSSVYPTITSGTSTKVIII 206 N S A S+ + + R S ++ ++E AFI N E+ ++SV T+ +G K I+ Sbjct: 129 FSNYSSARAVSSKSDSGRSESITLLIVEEAAFISN--MEELWASVQQTLATG--GKCIVN 184 Query: 207 STPNGMNHFYKLWVDAQK-GRNGYAWSEVHWSKVPGRDAKWKEQTIANTSERQFTQEFDC 265 ST NG+ ++Y+ + A K G++ + + + WS P RD KW E+ R F QE C Sbjct: 185 STYNGVGNWYERTIRAAKEGKSEFKYFGIKWSDHPERDEKWFEEQKRLLPPRVFAQEILC 244 Query: 266 EFLGSVDTLITAAKLRTLTYDDPLTTNGSLDVYENPVRDHDYIICVDVSRGLAQDYSAFV 325 GS + +I +R + DP D +E + Y I VD + G +D SA Sbjct: 245 IPQGSGENVIPFHLIREEEFIDPFVVKYGGDYWEWYRKPGYYFISVDPASGRGEDRSAVG 304 Query: 326 VIDITHAPWRL----VAKYRDHDVRPMVYPNIIFNVATNYNKAYVLTEVNDIGEAVSGSL 381 V + P L VA++ V +I + + + E N IG Sbjct: 305 VQVLWVDPQTLTIEQVAEFASDKTSLPVMRQVIKQIYDEFKPQLIFIETNGIGMG----- 359 Query: 382 FYDLEYENVLMCAMRGRAGQIVGQGFSGNKVQMGVKMSKTVKAQGCSNLKTLIEDDKLLV 441 L M IVG + K K G L L ED +L++ Sbjct: 360 ---------LYQFMEAYTPSIVGYYTTQRK-----------KVHGSDLLAKLYEDGRLIL 399 Query: 442 KDYNIVSEL--TTFIQNKQSFEADEGYNDDLVMCLV 475 + ++ +L TT+++NK + +DL M L+ Sbjct: 400 RSKRLLEQLQRTTWVKNK----VETAGRNDLYMALI 431 >gi|10766|lcl|protein:vir:78016 Length: 485 # NCBI annotation: terminase large subunit # Family: family:all:147 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467938;genbank:gi:157265379;genbank:Ge neID:5600506 Length = 485 Score = 73.2 bits (178), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 87/340 (25%), Positives = 142/340 (41%), Gaps = 67/340 (19%) Query: 163 VRGMSFNIIFLDEFAFIPNHIAEQFFSSVYPTITSGTSTKVIIISTPNGMNHFYKLWVDA 222 +RG + + + LDE A IP + + ++ PT+ S +IISTP G+N FY+ ++ Sbjct: 138 LRGATLDFVILDEAAMIPFSVWSE---AIEPTL-SVRDGWALIISTPKGLNWFYEFFLMG 193 Query: 223 QKG--RNGYAWSEVH-------------WSKVPGRDAKWKEQTIANTSERQFTQEFDCEF 267 +G + G S V+ W P R +W + + +F QE+ EF Sbjct: 194 WRGGLKEGIPNSGVNQTHPDFESFHAASWDVWPER-REWYMERRLYIPDLEFRQEYGAEF 252 Query: 268 LGSVDTLITAAKLRTLTYDDPLTTNGSLDVYENPVRDHDYIICVDVSRGLAQDYSAFVVI 327 + +++ + + L P G+ V E+ DH I C+ G QDYS F V+ Sbjct: 253 VSHSNSVFSGLDMLILL---PYERRGTRLVVEDYRPDH--IYCIGADFGKNQDYSVFSVL 307 Query: 328 DITHAPWRLV-----AKYRDHDVRPMVYPNIIFNVATNYNKAYVLTEVNDIGEAVSGSLF 382 D+ + A + D R + ++ +Y AYV+ + +G+A+ Sbjct: 308 DLDTGAIVCLERMNGATWSDQVAR-------LKALSEDYGHAYVVADTWGVGDAI----- 355 Query: 383 YDLEYENVLMCAMRGRAGQIVGQGFSGNKVQMGVKMSKTVKAQGCSNLKTLIEDDKLLVK 442 A ++ QG N + VK S +VK Q SNL L+E ++ V Sbjct: 356 ----------------AEELDAQGI--NYTPLPVK-SSSVKEQLISNLALLMEKGQVAVP 396 Query: 443 -DYNIVSELTTF-----IQNKQSFEADEGYNDDLVMCLVI 476 D I+ EL F Q A +DD+VM L + Sbjct: 397 NDKTILDELRNFRYYRTASGNQVMRAYGRGHDDIVMSLAL 436 >gi|12256|lcl|protein:vir:79447 Length: 485 # NCBI annotation: phage terminase large subunit # Family: family:all:147 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468054;genbank:gi:157265496;genbank:Ge neID:5600564 Length = 485 Score = 72.8 bits (177), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 86/340 (25%), Positives = 142/340 (41%), Gaps = 67/340 (19%) Query: 163 VRGMSFNIIFLDEFAFIPNHIAEQFFSSVYPTITSGTSTKVIIISTPNGMNHFYKLWVDA 222 +RG + + + LDE A IP + + ++ PT+ S +IISTP G+N FY+ ++ Sbjct: 138 LRGATLDFVILDEAAMIPFSVWSE---AIEPTL-SVRDGWALIISTPKGLNWFYEFFLMG 193 Query: 223 QKG--RNGYAWSEVH-------------WSKVPGRDAKWKEQTIANTSERQFTQEFDCEF 267 +G + G S ++ W P R +W + + +F QE+ EF Sbjct: 194 WRGGLKEGIPNSGINQTHPDFESFHAASWDVWPER-REWYMERRLYIPDLEFRQEYGAEF 252 Query: 268 LGSVDTLITAAKLRTLTYDDPLTTNGSLDVYENPVRDHDYIICVDVSRGLAQDYSAFVVI 327 + +++ + + L P G+ V E+ DH I C+ G QDYS F V+ Sbjct: 253 VSHSNSVFSGLDMLILL---PYERRGTRLVVEDYRPDH--IYCIGADFGKNQDYSVFSVL 307 Query: 328 DITHAPWRLV-----AKYRDHDVRPMVYPNIIFNVATNYNKAYVLTEVNDIGEAVSGSLF 382 D+ + A + D R + ++ +Y AYV+ + +G+A+ Sbjct: 308 DLDTGAIVCLERMNGATWSDQVAR-------LKALSEDYGHAYVVADTWGVGDAI----- 355 Query: 383 YDLEYENVLMCAMRGRAGQIVGQGFSGNKVQMGVKMSKTVKAQGCSNLKTLIEDDKLLVK 442 A ++ QG N + VK S +VK Q SNL L+E ++ V Sbjct: 356 ----------------AEELDAQGI--NYTPLPVK-SSSVKEQLISNLALLMEKGQVAVP 396 Query: 443 -DYNIVSELTTF-----IQNKQSFEADEGYNDDLVMCLVI 476 D I+ EL F Q A +DD+VM L + Sbjct: 397 NDKTILDELRNFRYYRTASGNQVMRAYGRGHDDIVMSLAL 436 >gi|1431|lcl|protein:vir:93626 Length: 530 # NCBI annotation: Bcep22gp49 # Family: family:all:147 # MgeID: mge:1470 # MgeName: Bcep22 # Cross-refs: genbank:acc:NP_944278;genbank:gi:38640355;genbank:GeneID :2658275 Length = 530 Score = 50.8 bits (120), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 16/152 (10%) Query: 81 RQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLL-GRLQLAYEQLPLWLQQGIVV 139 RQ G +T L + LFN N GI+A TA L +++ AY+ LP L++ + + Sbjct: 78 RQLGFTTLICIIWLDHALFNANSRCGIIAQDRETAEALFRDKVKFAYDNLPEALREAMPL 137 Query: 140 YNKGSMEL---ENGSKILAASTSASAVRGMSFNIIFLDEFAFI----PNHIAEQFFSSVY 192 N EL N S I A++ VRG + + + + EF I P+ AE S+ Sbjct: 138 ANCTKAELLFAHNNSSIRVATS----VRGGTIHRLHISEFGKICAKYPDKAAEVVTGSIP 193 Query: 193 PTITSGTSTKVIIISTPNGM-NHFYKLWVDAQ 223 SG ++I ST G FY + + A+ Sbjct: 194 AVPKSGI---LVIESTAEGREGEFYNITMQAE 222 >gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: terminase, large subunit # Family: family:all:147 # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006983;genbank:gi:46401884;genbank:GeneID :2777679 Length = 438 Score = 50.4 bits (119), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 101/238 (42%), Gaps = 22/238 (9%) Query: 39 FARNYIKIISLDEGIVPFDMWDFQEELIESFHE--NRFNIAKLPRQTGKSTTCVSYLLHY 96 F R + I EGI P Q +I + + +RF A + R+ GKS ++Y L + Sbjct: 22 FFRLPVSGILAQEGITPNGP---QIAIINALEDPRHRFVTACVSRRVGKS--FIAYTLGF 76 Query: 97 I-LFNDNVNVGILANKLSTARDLLGRLQLAYEQLPLWLQQGIVVYNKGSMELENGSKI-L 154 + L NV V ++A S A +G Q+ LQ +EL NGS L Sbjct: 77 LKLLEPNVKVLVVAPNYSLAN--IGWSQIRGLIKKYGLQTERENAKDKEIELANGSLFKL 134 Query: 155 AASTSASAVRGMSFNIIFLDEFAFIPNHIAEQFFSSVYPTITSGTSTKVIIISTPNGMN- 213 A++ A + G S++ I DE A I + + F + PT+ S K + ISTP G N Sbjct: 135 ASAAQADSAVGRSYDFIIFDEAA-ISDVGGDAFRVQLRPTLDKPNS-KALFISTPRGGNW 192 Query: 214 --HFYKLWVDAQKGRNGYAWSEVH--WSKVPGRDAKWKEQTIANTSERQFTQEFDCEF 267 FY D W +H + P D E+ S+ F QE++ +F Sbjct: 193 FKEFYAYGFDDTLPN----WVSIHGTYRDNPRADLNDIEEARRTVSKNYFRQEYEADF 246 >gi|17621|lcl|protein:vir:816 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:16 # MgeName: VT2-Sa # Cross-refs: genbank:acc:NP_050549;genbank:gi:9633446;genbank:GeneID: 1262208 Length = 568 Score = 44.7 bits (104), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 16/186 (8%) Query: 295 LDVYENPVRDHDYIICVDVSRGLAQ-DYSAFVVIDITHAPWRLVAKYRDHDVRPMVYPNI 353 L V+E P D +Y+ D + GL D S+ V+ ++ VA + H + ++ ++ Sbjct: 368 LLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNG--EQVAHWFGH-LDAELFAHL 424 Query: 354 IFNVATNYNKAYVLTEVNDIGEAVSGSL--FYDLEYENVLMCAMRGRAGQIVGQGFSGNK 411 I V YN A+V E N+ G AV L Y Y Q + Q + + Sbjct: 425 ISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIY---------NEQHLDQAYDDDT 475 Query: 412 VQMGVKMSKTVKAQGCSNLKTLIEDDKLLVKDYNIVSELTTFIQN-KQSFEADEGYNDDL 470 ++G ++ K +KTL+ + ++ +SE+ T++ + K S A EG DD Sbjct: 476 PRLGWLTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQ 535 Query: 471 VMCLVI 476 +M +I Sbjct: 536 LMSYMI 541 Score = 44.3 bits (103), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 10/130 (7%) Query: 42 NYIKIISLDEG-IVPFDMWDFQEELIESFHENRFNIAKLPRQTGKSTTCVSYLLHYILFN 100 N++ I ++G +V F M Q +L S H NI RQ G ST YLL LF Sbjct: 37 NHLYKIQNEKGELVTFRMRPAQRQLFRSMHNK--NIILKARQLGFSTAIDIYLLDQALFI 94 Query: 101 DNVNVGILANKLSTARDLL-GRLQLAYEQLPLWLQQGIVVYNK------GSMELENGSKI 153 ++ GI+A A ++ ++ + ++ LP WL+ + + G + +GS I Sbjct: 95 PHLKCGIVAQDKQAASEIFRTKIAVPFDHLPDWLRASFTIVERRSGASGGYILFGHGSSI 154 Query: 154 LAASTSASAV 163 A++ S Sbjct: 155 QVATSFRSGT 164 >gi|25680|lcl|protein:vir:10116 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:180 # MgeName: Stx2 converting bacteriophage II # Cross-refs: genbank:acc:NP_859246;genbank:gi:32171173;genbank:GeneID :2653342 Length = 568 Score = 44.7 bits (104), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 16/186 (8%) Query: 295 LDVYENPVRDHDYIICVDVSRGLAQ-DYSAFVVIDITHAPWRLVAKYRDHDVRPMVYPNI 353 L V+E P D +Y+ D + GL D S+ V+ ++ VA + H + ++ ++ Sbjct: 368 LLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNG--EQVAHWFGH-LDAELFAHL 424 Query: 354 IFNVATNYNKAYVLTEVNDIGEAVSGSL--FYDLEYENVLMCAMRGRAGQIVGQGFSGNK 411 I V YN A+V E N+ G AV L Y Y Q + Q + + Sbjct: 425 ISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIY---------NEQHLDQAYDDDT 475 Query: 412 VQMGVKMSKTVKAQGCSNLKTLIEDDKLLVKDYNIVSELTTFIQN-KQSFEADEGYNDDL 470 ++G ++ K +KTL+ + ++ +SE+ T++ + K S A EG DD Sbjct: 476 PRLGWLTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQ 535 Query: 471 VMCLVI 476 +M +I Sbjct: 536 LMSYMI 541 Score = 44.3 bits (103), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 10/130 (7%) Query: 42 NYIKIISLDEG-IVPFDMWDFQEELIESFHENRFNIAKLPRQTGKSTTCVSYLLHYILFN 100 N++ I ++G +V F M Q +L S H NI RQ G ST YLL LF Sbjct: 37 NHLYKIQNEKGELVTFRMRPAQRQLFRSMHNK--NIILKARQLGFSTAIDIYLLDQALFI 94 Query: 101 DNVNVGILANKLSTARDLL-GRLQLAYEQLPLWLQQGIVVYNK------GSMELENGSKI 153 ++ GI+A A ++ ++ + ++ LP WL+ + + G + +GS I Sbjct: 95 PHLKCGIVAQDKQAASEIFRTKIAVPFDHLPDWLRASFTIVERRSGASGGYILFGHGSSI 154 Query: 154 LAASTSASAV 163 A++ S Sbjct: 155 QVATSFRSGT 164 >gi|51|lcl|protein:vir:3295 Length: 568 # NCBI annotation: putative large subunit terminase # Family: family:all:147 # MgeID: mge:66 # MgeName: 933W # Cross-refs: genbank:acc:NP_049511;genbank:gi:9632517;genbank:GeneID: 1262002 Length = 568 Score = 44.7 bits (104), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 16/186 (8%) Query: 295 LDVYENPVRDHDYIICVDVSRGLAQ-DYSAFVVIDITHAPWRLVAKYRDHDVRPMVYPNI 353 L V+E P D +Y+ D + GL D S+ V+ ++ VA + H + ++ ++ Sbjct: 368 LLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNG--EQVAHWFGH-LDAELFAHL 424 Query: 354 IFNVATNYNKAYVLTEVNDIGEAVSGSL--FYDLEYENVLMCAMRGRAGQIVGQGFSGNK 411 I V YN A+V E N+ G AV L Y Y Q + Q + + Sbjct: 425 ISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIY---------NEQHLDQAYDDDT 475 Query: 412 VQMGVKMSKTVKAQGCSNLKTLIEDDKLLVKDYNIVSELTTFIQN-KQSFEADEGYNDDL 470 ++G ++ K +KTL+ + ++ +SE+ T++ + K S A EG DD Sbjct: 476 PRLGWLTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQ 535 Query: 471 VMCLVI 476 +M +I Sbjct: 536 LMSYMI 541 Score = 44.3 bits (103), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 10/130 (7%) Query: 42 NYIKIISLDEG-IVPFDMWDFQEELIESFHENRFNIAKLPRQTGKSTTCVSYLLHYILFN 100 N++ I ++G +V F M Q +L S H NI RQ G ST YLL LF Sbjct: 37 NHLYKIQNEKGELVTFRMRPAQRQLFRSMHNK--NIILKARQLGFSTAIDIYLLDQALFI 94 Query: 101 DNVNVGILANKLSTARDLL-GRLQLAYEQLPLWLQQGIVVYNK------GSMELENGSKI 153 ++ GI+A A ++ ++ + ++ LP WL+ + + G + +GS I Sbjct: 95 PHLKCGIVAQDKQAASEIFRTKIAVPFDHLPDWLRASFTIVERRSGASGGYILFGHGSSI 154 Query: 154 LAASTSASAV 163 A++ S Sbjct: 155 QVATSFRSGT 164 >gi|26240|lcl|protein:vir:2763 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:59 # MgeName: Stx2 converting bacteriophage I # Cross-refs: genbank:acc:NP_612880;genbank:gi:20065962;genbank:GeneID :935714 Length = 568 Score = 44.7 bits (104), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 16/186 (8%) Query: 295 LDVYENPVRDHDYIICVDVSRGLAQ-DYSAFVVIDITHAPWRLVAKYRDHDVRPMVYPNI 353 L V+E P D +Y+ D + GL D S+ V+ ++ VA + H + ++ ++ Sbjct: 368 LLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNG--EQVAHWFGH-LDAELFAHL 424 Query: 354 IFNVATNYNKAYVLTEVNDIGEAVSGSL--FYDLEYENVLMCAMRGRAGQIVGQGFSGNK 411 I V YN A+V E N+ G AV L Y Y Q + Q + + Sbjct: 425 ISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIY---------NEQHLDQAYDDDT 475 Query: 412 VQMGVKMSKTVKAQGCSNLKTLIEDDKLLVKDYNIVSELTTFIQN-KQSFEADEGYNDDL 470 ++G ++ K +KTL+ + ++ +SE+ T++ + K S A EG DD Sbjct: 476 PRLGWLTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQ 535 Query: 471 VMCLVI 476 +M +I Sbjct: 536 LMSYMI 541 Score = 44.3 bits (103), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 10/130 (7%) Query: 42 NYIKIISLDEG-IVPFDMWDFQEELIESFHENRFNIAKLPRQTGKSTTCVSYLLHYILFN 100 N++ I ++G +V F M Q +L S H NI RQ G ST YLL LF Sbjct: 37 NHLYKIQNEKGELVTFRMRPAQRQLFRSMHNK--NIILKARQLGFSTAIDIYLLDQALFI 94 Query: 101 DNVNVGILANKLSTARDLL-GRLQLAYEQLPLWLQQGIVVYNK------GSMELENGSKI 153 ++ GI+A A ++ ++ + ++ LP WL+ + + G + +GS I Sbjct: 95 PHLKCGIVAQDKQAASEIFRTKIAVPFDHLPDWLRASFTIVERRSGASGGYILFGHGSSI 154 Query: 154 LAASTSASAV 163 A++ S Sbjct: 155 QVATSFRSGT 164 >gi|25849|lcl|protein:vir:9949 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:179 # MgeName: Stx1 converting bacteriophage # Cross-refs: genbank:acc:NP_859079;genbank:gi:32171001;genbank:GeneID :2653280 Length = 568 Score = 44.7 bits (104), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 16/186 (8%) Query: 295 LDVYENPVRDHDYIICVDVSRGLAQ-DYSAFVVIDITHAPWRLVAKYRDHDVRPMVYPNI 353 L V+E P D +Y+ D + GL D S+ V+ ++ VA + H + ++ ++ Sbjct: 368 LLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNG--EQVAHWFGH-LDAELFAHL 424 Query: 354 IFNVATNYNKAYVLTEVNDIGEAVSGSL--FYDLEYENVLMCAMRGRAGQIVGQGFSGNK 411 I V YN A+V E N+ G AV L Y Y Q + Q + + Sbjct: 425 ISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIY---------NEQHLDQAYDDDT 475 Query: 412 VQMGVKMSKTVKAQGCSNLKTLIEDDKLLVKDYNIVSELTTFIQN-KQSFEADEGYNDDL 470 ++G ++ K +KTL+ + ++ +SE+ T++ + K S A EG DD Sbjct: 476 PRLGWLTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQ 535 Query: 471 VMCLVI 476 +M +I Sbjct: 536 LMSYMI 541 Score = 44.3 bits (103), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 10/130 (7%) Query: 42 NYIKIISLDEG-IVPFDMWDFQEELIESFHENRFNIAKLPRQTGKSTTCVSYLLHYILFN 100 N++ I ++G +V F M Q +L S H NI RQ G ST YLL LF Sbjct: 37 NHLYKIQNEKGELVTFRMRPAQRQLFRSMHNK--NIILKARQLGFSTAIDIYLLDQALFI 94 Query: 101 DNVNVGILANKLSTARDLL-GRLQLAYEQLPLWLQQGIVVYNK------GSMELENGSKI 153 ++ GI+A A ++ ++ + ++ LP WL+ + + G + +GS I Sbjct: 95 PHLKCGIVAQDKQAASEIFRTKIAVPFDHLPDWLRASFTIVERRSGASGGYILFGHGSSI 154 Query: 154 LAASTSASAV 163 A++ S Sbjct: 155 QVATSFRSGT 164 >gi|1476|lcl|protein:vir:104436 Length: 568 # NCBI annotation: putative terminase large subunit # Family: family:all:147 # MgeID: mge:1471 # MgeName: 86 # Cross-refs: genbank:acc:YP_794060;genbank:gi:116222005;genbank:GeneI D:4397501 Length = 568 Score = 44.7 bits (104), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 16/186 (8%) Query: 295 LDVYENPVRDHDYIICVDVSRGLAQ-DYSAFVVIDITHAPWRLVAKYRDHDVRPMVYPNI 353 L V+E P D +Y+ D + GL D S+ V+ ++ VA + H + ++ ++ Sbjct: 368 LLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNG--EQVAHWFGH-LDAELFAHL 424 Query: 354 IFNVATNYNKAYVLTEVNDIGEAVSGSL--FYDLEYENVLMCAMRGRAGQIVGQGFSGNK 411 I V YN A+V E N+ G AV L Y Y Q + Q + + Sbjct: 425 ISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIY---------NEQHLDQAYDDDT 475 Query: 412 VQMGVKMSKTVKAQGCSNLKTLIEDDKLLVKDYNIVSELTTFIQN-KQSFEADEGYNDDL 470 ++G ++ K +KTL+ + ++ +SE+ T++ + K S A EG DD Sbjct: 476 PRLGWLTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQ 535 Query: 471 VMCLVI 476 +M +I Sbjct: 536 LMSYMI 541 Score = 44.3 bits (103), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 10/130 (7%) Query: 42 NYIKIISLDEG-IVPFDMWDFQEELIESFHENRFNIAKLPRQTGKSTTCVSYLLHYILFN 100 N++ I ++G +V F M Q +L S H NI RQ G ST YLL LF Sbjct: 37 NHLYKIQNEKGELVTFRMRPAQRQLFRSMHNK--NIILKARQLGFSTAIDIYLLDQALFI 94 Query: 101 DNVNVGILANKLSTARDLL-GRLQLAYEQLPLWLQQGIVVYNK------GSMELENGSKI 153 ++ GI+A A ++ ++ + ++ LP WL+ + + G + +GS I Sbjct: 95 PHLKCGIVAQDKQAASEIFRTKIAVPFDHLPDWLRASFTIVERRSGASGGYILFGHGSSI 154 Query: 154 LAASTSASAV 163 A++ S Sbjct: 155 QVATSFRSGT 164 >gi|24686|lcl|protein:vir:79769 Length: 635 # NCBI annotation: terminase large subunit # Family: family:all:4877 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429607;genbank:gi:156564098;genbank:Ge neID:5525534 Length = 635 Score = 40.8 bits (94), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/224 (22%), Positives = 99/224 (44%), Gaps = 42/224 (18%) Query: 20 QFSKEQIQEYLKCKEDPVYFARNYIKIISLDEGIVPFDMWDFQEELIESFHENRFNIAKL 79 +F++E++ YL + P ++A +K D +QE +++ +++ + +L Sbjct: 41 KFTEEELH-YLAILDKPKFWAAETLKWFCRD----------YQEPMLQEMADSKRTVLRL 89 Query: 80 PRQTGKS-TTCVSYLLH-YILFNDNVN--------------VGILANKLSTARDLLGRLQ 123 R+ GK+ T C+ L H + N N V ++ +LS D+ G + Sbjct: 90 GRRLGKTETMCIMILWHAFTQPNKGPNNQYDILIIAPYEEQVDLIFKRLSQLIDMSGDVN 149 Query: 124 LAYE-QLPLWLQQGIVVYNKGSMELENGSKILAASTSASAVRGMSFNIIFLDEFAFIPNH 182 + + + L G V++ + GSK + + A+ RG ++I LDE ++ Sbjct: 150 PSRDIDKHIELPNGTVIHG-----ITAGSK---SGSGAANTRGQRADLIVLDEM----DY 197 Query: 183 IAEQFFSSVYPTITSGTS-TKVIIISTPNG-MNHFYKLWVDAQK 224 + E +++ K+I+ STP+G + +YK V A K Sbjct: 198 MGESEITNIMNIRNEAPERIKMIVASTPSGRRDSYYKWCVGATK 241 >gi|4674|lcl|protein:vir:105593 Length: 543 # NCBI annotation: terminase large subunit # Family: family:all:147 # MgeID: mge:1540 # MgeName: F116 # Cross-refs: genbank:acc:YP_164303;genbank:gi:56692921;genbank:GeneID :3197204 Length = 543 Score = 38.5 bits (88), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/216 (23%), Positives = 90/216 (41%), Gaps = 34/216 (15%) Query: 28 EYLKCKEDPVY--FARNYIKII-----------SLDEG---IVPFDMWDFQEELIESFHE 71 E +C DP + F+ KI+ S++EG ++PF Q+ I Sbjct: 20 ELARCLADPEWRLFSGCLYKIMIKGDDKIGPDGSIEEGDSFVLPFKPNRAQKRFIRRLWH 79 Query: 72 NRFNIAKLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLL-GRLQLAYEQLP 130 N+ RQ G +T L + LFN + GI+A A+ + +++ AY+ LP Sbjct: 80 R--NLILKARQLGFTTLIAIMWLDHALFNGDQRCGIIAQDRDAAKVIFRDKVKFAYDNLP 137 Query: 131 LWLQQGIVVYNKGSMEL---ENGSKILAASTSASAVRGMSFNIIFLDEFAFI----PNHI 183 +++ + EL N S + A++ +R + + + + EF I P+ Sbjct: 138 EEIRERFPTAAANADELLFAHNNSSVRVATS----MRSGTIHRLHVSEFGKICAKYPDKA 193 Query: 184 AEQFFSSVYPTITSGTSTKVIIISTPNGM-NHFYKL 218 E S+ T+G ++I ST G F+K+ Sbjct: 194 QEVVTGSIPAVPTNGI---LVIESTAEGREGEFFKM 226 >gi|4240|lcl|protein:vir:94734 Length: 469 # NCBI annotation: large subunit terminase # Family: family:all:523 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996704;genbank:gi:45597419;genbank:GeneID :2767958 Length = 469 Score = 37.4 bits (85), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 41/205 (20%) Query: 17 TEIQFSKEQIQEYLKCKEDPVYFARNYIK-IISLDEGIVPFDMWDFQEELIESFHENRFN 75 TE ++ +E I+ Y K K + + +N +K I+++DE +W Q +F Sbjct: 21 TETKY-QEAIEIYEKSKHECYPWQKNLLKEIMAIDED----GLWTHQ----------KFG 65 Query: 76 IAKLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLLGRLQLAYEQLPLWLQ- 134 + +PR+ GK T + Y+L +++ A+++ST+ +YE+L +L+ Sbjct: 66 YS-IPRRNGK--TEIVYILELWALEQGLSILHTAHRISTSHS-------SYEKLKKYLED 115 Query: 135 ---------QGIVVYNKGSMEL-ENGSKILAASTSASAVRGMSFNIIFLDEFAFIPNHIA 184 + I + +EL E+G I + ++S G F+I+F+DE + Sbjct: 116 SGYVEGEDFKSIKAKGQERLELIESGGVIQFRTRTSSGGLGEGFDILFIDE---AQEYTT 172 Query: 185 EQFFSSVYPTITSGTSTKVIIISTP 209 EQ S++ T+T + I+ TP Sbjct: 173 EQ-ESALKYTVTDSDNPMTIMCGTP 196 >gi|16385|lcl|protein:vir:3744 Length: 607 # NCBI annotation: orf15 # Family: family:all:169 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043485;genbank:gi:9628620;genbank:GeneID: 1261142 Length = 607 Score = 35.0 bits (79), Expect = 0.003, Method: Compositional matrix adjust. Identities = 71/356 (19%), Positives = 139/356 (39%), Gaps = 48/356 (13%) Query: 55 PF--DMWDFQEELIESFHENRFNIAKLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKL 112 PF ++D+Q+ + + H + NI K RQ G + L +F+ + + + A+K Sbjct: 158 PFIDSLFDYQKHIRSNKHHDVRNILK-SRQIGATYYFSFEALEDAIFSGDNQIFLSASKR 216 Query: 113 STARDLLGRLQLAYEQLPLWLQQGIVVYNKGSMELENGSKILAASTSASAVRGMSFNIIF 172 +++A E + L ++ L NG+++ ST+ + +G S ++ + Sbjct: 217 QAEIFKNYIVKMAREYFGVELTGNPII-------LSNGAELHFLSTNKNTSQGNSGHV-Y 268 Query: 173 LDEFAFIPNHIAEQFFSSVYPTITSGTSTKVIIISTPNGMNH-FYKLWV-----DAQKGR 226 DE+A+I + Q F V + + + STP+ H Y W D R Sbjct: 269 GDEYAWIRDF---QRFDDVASAMATHEKWRETYFSTPSSKFHESYSFWSGDNWRDGDPKR 325 Query: 227 NGYAWSEVHWSKVPGR---DAKWK-------------------EQTIANTSERQFTQEFD 264 + + GR D +W+ E+ S+ F Q + Sbjct: 326 KNVPFPTFAELRDGGRLCPDGQWRYVVTIEDALKGGADKLFNIEKLKQRYSKYAFNQLYM 385 Query: 265 CEFLGSVDTLITAAKLRTLTYDDPLTTNGSLDVYENPVRDHDYIICVDVSRGLAQDYSAF 324 C ++ D++ +L D + + + P D + D + + D ++F Sbjct: 386 CIWIDDADSIFNVKQLLKCGVDIAKWKDFNPKA-DRPFGDREVWGGFDPAH--SGDGASF 442 Query: 325 VVIDITHAP---WRLVAKYRDHDVRPMVYPNIIFNVATNYNKAYVLTEVNDIGEAV 377 V+I P +R++A+Y+ H + + N I + YN Y+ + +G V Sbjct: 443 VIIAPPALPGEKYRMLARYQWHGLSYVYQANQIRALYEKYNMTYIGIDATGVGYGV 498 >gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958579;genbank:gi:41179257;genbank:GeneID :2717087 Length = 424 Score = 33.5 bits (75), Expect = 0.008, Method: Compositional matrix adjust. Identities = 40/184 (21%), Positives = 72/184 (39%), Gaps = 22/184 (11%) Query: 158 TSASAVRGMSFNIIFLDEFAFIPNHIAEQFFSSVYPTITSGTSTKVIIISTPNGMNHFYK 217 S V+G++ F DE A +P Q + S T +K+ P+G H++K Sbjct: 122 ASQDLVQGITLAGFFFDEVALMPQSFVNQATARC-----SVTGSKMWFNCNPSGPFHWFK 176 Query: 218 L-WVDAQKGRNGYAWSEVHWSKVPGRDAKWKEQTIANTSERQFTQEFDCEFLGSVDTLIT 276 L W+D K + +H++ D + N ER ++ F ++ + + Sbjct: 177 LNWIDQMKDKRAL---RIHFTM---HDNPSLDSVTINRYERMYSGVFYQRYIQGLWVMSE 230 Query: 277 AAKLRTLTYDDPLTTNGSLDVYENPVRDHDYIICVDVSRGLAQDYSAFVVIDITHAPWRL 336 + YD+ ++ V E P Y + D + +AF++ H W L Sbjct: 231 G-----VIYDN--FDKDTMVVNELPNHFEKYYVSCDYG---TLNPTAFLLWGRNHGVWYL 280 Query: 337 VAKY 340 V +Y Sbjct: 281 VKEY 284 >gi|19904|lcl|protein:vir:3781 Length: 607 # NCBI annotation: terminase # Family: family:all:169 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536821;genbank:gi:17981830;genbank:GeneID :929209 Length = 607 Score = 33.1 bits (74), Expect = 0.009, Method: Compositional matrix adjust. Identities = 71/356 (19%), Positives = 141/356 (39%), Gaps = 48/356 (13%) Query: 55 PF--DMWDFQEELIESFHENRFNIAKLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKL 112 PF ++D+Q+ + + H + NI K RQ G + L +F+ + + + A+K Sbjct: 158 PFIDSLFDYQKHIRANKHHDVRNILK-SRQIGATYYFSFEALEDAIFSGDNQIFLSASKR 216 Query: 113 STARDLLGRLQLAYEQLPLWLQQGIVVYNKGSMELENGSKILAASTSASAVRGMSFNIIF 172 +++A E + L ++ L NG+++ ST+ + +G S ++ + Sbjct: 217 QAEIFKNYIVKMAREYFGVELTGNPII-------LSNGAELHFLSTNKNTSQGNSGHV-Y 268 Query: 173 LDEFAFIPNHIAEQFFSSVYPTITSGTSTKVIIISTPNGMNH-FYKLWV-----DAQKGR 226 DE+A+I + Q F+ V + + + STP+ H Y W D R Sbjct: 269 GDEYAWIRDF---QRFNDVASAMATHAKWRETYFSTPSSKFHESYSFWSGDNWRDGDPKR 325 Query: 227 NGYAWSEVHWSKVPGR---DAKWK-------------------EQTIANTSERQFTQEFD 264 + + GR D +W+ E+ S+ F Q + Sbjct: 326 KNVPFPTFAELRDGGRLCPDGQWRYVVTIEDALKGGAGTLFNIEKLKQRYSKYAFNQLYM 385 Query: 265 CEFLGSVDTLITAAKLRTLTYDDPLTTNGSLDVYENPVRDHDYIICVDVSRGLAQDYSAF 324 C ++ D++ T +L D + + + P D + D + + D ++F Sbjct: 386 CVWIDDADSIFTVHQLLKCGVDISKWKDFNPKA-DRPFGDREVWGGFDPAH--SGDGASF 442 Query: 325 VVIDITHAP---WRLVAKYRDHDVRPMVYPNIIFNVATNYNKAYVLTEVNDIGEAV 377 V+I P +R++A+Y+ + + + N I + YN Y+ + +G V Sbjct: 443 VIIAPPALPSEKYRVLARYQWNGLSYVYQANQIRALYEKYNMTYIGIDATGVGYGV 498 >gi|3859|lcl|protein:vir:107748 Length: 532 # NCBI annotation: gp33 TerL # Family: family:all:54 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024878;genbank:gi:48697520;genbank:GeneID :2948367 Length = 532 Score = 32.7 bits (73), Expect = 0.012, Method: Compositional matrix adjust. Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 13/113 (11%) Query: 164 RGMSFNIIFLDEFAFIPNHIAEQFFSSVYPTITSGTSTKVIIISTPNGMNHFYKLWVDAQ 223 RG +I F+DE A + N + T + T+ I IS+ NG+N+ + A+ Sbjct: 195 RGGRVSIQFVDEAAHLEN-------AQAVDTALAATTNCRIDISSVNGLNNPF-----AE 242 Query: 224 KGRNGYAWSE-VHWSKVPGRDAKWKEQTIANTSERQFTQEFDCEFLGSVDTLI 275 K +G + +HW P +D +W ++ + QE D ++ S + ++ Sbjct: 243 KRFSGRVKVKTMHWRDDPRKDDEWYKKQKQKFNALVVAQEIDIDYSASAEGVL 295 >gi|18494|lcl|protein:vir:1636 Length: 469 # NCBI annotation: putative terminase # Family: family:all:523 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695057;genbank:gi:23455748;genbank:GeneID :955481 Length = 469 Score = 32.3 bits (72), Expect = 0.014, Method: Compositional matrix adjust. Identities = 48/205 (23%), Positives = 93/205 (45%), Gaps = 41/205 (20%) Query: 17 TEIQFSKEQIQEYLKCKEDPVYFARNYIK-IISLDEGIVPFDMWDFQEELIESFHENRFN 75 TE ++ +E I+ Y K K + + +N +K ++++DE +W Q +F Sbjct: 21 TETKY-QEAIEIYEKSKHECYPWQKNLLKEVMAIDED----GLWTHQ----------KFG 65 Query: 76 IAKLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLLGRLQLAYEQLPLWLQ- 134 + +PR+ GK T + Y+L +++ A+++ST+ +YE+L +L+ Sbjct: 66 YS-IPRRNGK--TEIVYILELWSLVQGLSILHTAHRISTSHS-------SYEKLKKYLED 115 Query: 135 ---------QGIVVYNKGSMEL-ENGSKILAASTSASAVRGMSFNIIFLDEFAFIPNHIA 184 + I + +EL E+G I + ++S G F+I+ +DE + Sbjct: 116 SGYVEGEDFKSIKAKGQERLELIESGGVIQFRTRTSSGGLGEGFDILVIDEAQ---EYTT 172 Query: 185 EQFFSSVYPTITSGTSTKVIIISTP 209 EQ + Y T+T + I+ TP Sbjct: 173 EQESALKY-TVTDSDNPMTIMCGTP 196 >gi|14676|lcl|protein:vir:2499 Length: 474 # NCBI annotation: putative terminase gp4 # Family: family:all:523 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569740;genbank:gi:18496890;genbank:GeneID :932339 Length = 474 Score = 30.4 bits (67), Expect = 0.055, Method: Compositional matrix adjust. Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 23/168 (13%) Query: 56 FDMW-DFQEELIESFHENRFNIA-----KLPRQTGKSTTCVSYLLHYILFNDNVNVGILA 109 FD+W D +LI + ++ A +PRQTGK+ + + + N V A Sbjct: 40 FDLWQDDLGKLICAKRDDGLYAADMFAMSIPRQTGKTYLLGALVFALCIKTPNTTVIWTA 99 Query: 110 NKLSTARD-------LLGRLQLAYEQLPLWLQQGIVVYNKGSMELENGSKILAASTSASA 162 ++ TA + L R ++A L + G K ++ +NGS+IL + Sbjct: 100 HRTRTAAETFRSMQGLAKRDKIAPHILNVHTGNG-----KEAVLFKNGSRILFGARERGF 154 Query: 163 VRGMS-FNIIFLDEFAFIPNHIAEQFFSSVYPTITSGTSTKVIIISTP 209 RG + +++ DE + E + P + + +++ TP Sbjct: 155 GRGFAGVDVLIFDEAQI----LTENAMDDMVPATNAAPNPLILLAGTP 198 >gi|7504|lcl|protein:vir:99915 Length: 478 # NCBI annotation: gp2 # Family: family:all:523 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655519;genbank:gi:109392289;genbank:GeneI D:4157084 Length = 478 Score = 30.0 bits (66), Expect = 0.066, Method: Compositional matrix adjust. Identities = 31/139 (22%), Positives = 58/139 (41%), Gaps = 9/139 (6%) Query: 75 NIAKLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLLGRLQLAYEQLPLWLQ 134 ++ +PRQ GK+ + L + V A++ TA++ G ++ A PL Sbjct: 63 SVISIPRQVGKTYLIGCIVFALALLTPGLTVIWTAHRTKTAKETFGSMK-AMCATPLVNA 121 Query: 135 QGIVVYNKGSME---LENGSKIL-AASTSASAVRGMSFNIIFLDEFAFIPNHIAEQFFSS 190 V + E L NGS+IL A + + I+ LDE + ++ Sbjct: 122 HVRNVSDARGDEGIYLHNGSRILFGARENGFGLGFAGVGILVLDEA----QRLTDKAMDD 177 Query: 191 VYPTITSGTSTKVIIISTP 209 + PT+ + + +++ TP Sbjct: 178 LIPTMNTVENPLILLTGTP 196 >gi|11877|lcl|protein:vir:79128 Length: 593 # NCBI annotation: terminase # Family: family:all:169 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165255;genbank:gi:145708080;genbank:Ge neID:5247139 Length = 593 Score = 29.6 bits (65), Expect = 0.091, Method: Compositional matrix adjust. Identities = 59/263 (22%), Positives = 95/263 (36%), Gaps = 35/263 (13%) Query: 145 MELENGSKILAASTSASAVRGMSFNIIFLDEFAFIPNHIAEQFFSSVYPTITSGTSTKVI 204 M L NG+ + T+A + N+ F DE+ ++P Q V + + Sbjct: 230 MVLPNGATLYFLGTNARTAQSYHGNLYF-DEYFWVPRF---QELRKVASGMAIHKHWRQT 285 Query: 205 IISTPNGMNH-FYKLWVDA--QKGRNGYAWSEVHWSKVPGRDA------KWKEQTIANTS 255 STP+ ++H Y W A +G+ ++ S RD +W++ + Sbjct: 286 YFSTPSSLSHEAYPFWSGALFNRGKAKDKQIKLDLSHAALRDGMRCADGQWRQIVTVEDA 345 Query: 256 ERQFTQEFDCEFLGSVDTLITAAKLRTLTYDD------PLTT--NGSLDVYE-------- 299 R FD + L + + A L + D PL G +D +E Sbjct: 346 LRGGCNLFDLDQLRLEYSELDFANLLMCVFIDDNASVFPLAMLMRGMVDSWEVWEDFRPF 405 Query: 300 --NPVRDHDYIICVDVSRGLAQDYSAFVVIDITHAPWRLVAKYRDHDVRPMVY---PNII 354 P + + D + G D +A VV+ P H R + Y I Sbjct: 406 APRPFGNRPVWVGYDPNGG-GGDSAALVVVAPPLVPGGKFRVLERHQFRGIDYEEQAGAI 464 Query: 355 FNVATNYNKAYVLTEVNDIGEAV 377 VA Y+ AYV + IG+AV Sbjct: 465 RRVAERYDVAYVGIDRTGIGDAV 487 >gi|14590|lcl|protein:vir:8098 Length: 515 # NCBI annotation: gp2 # Family: family:all:523 # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817679;genbank:gi:29566110;genbank:GeneID :1259304 Length = 515 Score = 29.6 bits (65), Expect = 0.097, Method: Compositional matrix adjust. Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 6/68 (8%) Query: 142 KGSMELENGSKILAASTSASAVRGMSFNIIFLDE-FAFIPNHIAEQFFSSVYPTITSGTS 200 K S +G +++ + + S RG++ N + LDE FA H+ S+ PT+++ Sbjct: 140 KPSKACPDGQRVIFKARTNSGGRGLTGNKVILDEGFALRHAHMG-----SLMPTLSAVPD 194 Query: 201 TKVIIIST 208 +++I S+ Sbjct: 195 PQLLIGSS 202 >gi|8126|lcl|protein:vir:102661 Length: 568 # NCBI annotation: terminase # Family: family:all:147 # MgeID: mge:1624 # MgeName: VP2 # Cross-refs: genbank:acc:YP_024418;genbank:gi:48696639;genbank:GeneID :2948128 Length = 568 Score = 26.9 bits (58), Expect = 0.71, Method: Compositional matrix adjust. Identities = 12/24 (50%), Positives = 15/24 (62%) Query: 206 ISTPNGMNHFYKLWVDAQKGRNGY 229 I+TP G N FYKL + A+K Y Sbjct: 216 ITTPRGKNWFYKLAMHAEKSEEWY 239 >gi|10061|lcl|protein:vir:99071 Length: 537 # NCBI annotation: gp26 # Family: family:all:523 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655891;genbank:gi:109521463;genbank:GeneI D:4158036 Length = 537 Score = 25.8 bits (55), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 7/72 (9%) Query: 142 KGSMELENGSKILAASTSASAVRGMSFNIIFLDE-FAFIPNHIAEQFFSSVYPTITSGTS 200 K S G +++ + + RG S ++I LDE FA IA ++ TS + Sbjct: 164 KESRHPNAGGRVIYMARGTAVARGFSADVIVLDEAFALDEASIAAIDYA------TSARA 217 Query: 201 TKVIIISTPNGM 212 II ++ G+ Sbjct: 218 NPFIIYASSTGL 229 >gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680484;swissprot:trembl:q8ltc3;genbank:gi :22296524;interpro:IPR005021;uniprot:Q8LTC3;genbank:Gene ID:951698 Length = 563 Score = 25.8 bits (55), Expect = 1.5, Method: Compositional matrix adjust. Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 9/107 (8%) Query: 79 LPRQTGKSTTCVSYLLHYILFNDNV----NVGILANKLSTARDLLG----RLQLAYEQLP 130 + R+ GKS +L+ LF N + AN A + G RL+ + P Sbjct: 97 MARKNGKSLLISGVILYEFLFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDP 156 Query: 131 LWLQQGIVVYNKGSMELENGSKILAASTSASAVRGMSFNIIFLDEFA 177 +++ + + + L++GS I + S V G ++ +DE+A Sbjct: 157 -GIKRMVKITRDELVNLDDGSTIRSFSRDTGLVDGYEPHVAVVDEYA 202 >gi|25398|lcl|protein:vir:8929 Length: 717 # NCBI annotation: ORF025 # Family: family:all:1546 # MgeID: mge:163 # MgeName: phiKZ # Cross-refs: genbank:acc:NP_803591;genbank:gi:29134961;genbank:GeneID :1258246 Length = 717 Score = 25.4 bits (54), Expect = 1.7, Method: Compositional matrix adjust. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 441 VKDYNIVSELTTFIQNKQSFEADEGYNDDLVMCLVIFAWLVQQ 483 + D + +EL + +G +DDLV+ L++ WL+ Q Sbjct: 567 IYDKPLSTELLALTIRNGRIDHAKGNHDDLVVSLLLAHWLLIQ 609 >gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468641;genbank:gi:157325219;genbank:Ge neID:5601657 Length = 547 Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 12/102 (11%) Query: 18 EIQFSKEQIQEYLKCKEDPVYFARNYIKIISLDEGIVPFDMWDFQEELIESFHENRFNIA 77 +I F + QI+ Y+ E + Y + + ++ I PF F+E+ E F+E F Sbjct: 41 DIYFDETQIENYISFSE------KWYFPLDNWEKFIAPFIFLYFKED-DELFYEEFF--I 91 Query: 78 KLPRQTGKS---TTCVSYLLHYILFNDNVNVGILANKLSTAR 116 L R GK+ +T +Y + + +N +V ++AN A+ Sbjct: 92 TLGRGGGKNGFISTLSNYFISPLHGINNYDVSVVANSEDQAK 133 >gi|14353|lcl|protein:vir:3149 Length: 554 # NCBI annotation: unknown # Family: family:all:28407 # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665920;genbank:gi:22091106;genbank:GeneID :951323 Length = 554 Score = 25.0 bits (53), Expect = 2.3, Method: Compositional matrix adjust. Identities = 50/247 (20%), Positives = 93/247 (37%), Gaps = 49/247 (19%) Query: 233 EVHWSKVPGRDAKWKEQTIANTSERQFTQEFDCEFLGSVDTLITAAKLRTLTYDDPLTTN 292 +V W + R +W + ++ +F +E+ +GS LI A +R P Sbjct: 288 QVLWPEA--RGPRWLADKRSKMADHRFWREYSLVIMGSSGDLIDAKDVRV-----PAEDG 340 Query: 293 G-SLDVYENPVR-----DHDYIICVDVSRGLAQDYSAFVVIDITHAPWRLVAKYR----D 342 G S+ + P + ++ D + D +AF V W L R D Sbjct: 341 GCSIGDRDPPPKYRAGPGEVVVLSHDPANSPTGDDAAFTV-------WLLQRDGRRRLLD 393 Query: 343 HDVRPMVYPNIIFNVATNYNKAY----VLTEVNDIGEAVSGSLFYDLEYENVLMCAMRGR 398 + + P I Y++AY ++ E N + V +E+++ L Sbjct: 394 CHAKSGMGPTDIKTQLVEYDRAYDPAIIVIEDNGMQSYVVEDA---IEFDSQL------- 443 Query: 399 AGQIVGQGFSGNKVQMGVKMSKTVKAQGCSNLKTLIEDDKLLVKDYNIVSELTTFIQNKQ 458 ++ G +G K + G + L+ L+E+ ++L + +E FI + Q Sbjct: 444 GAKVTGLPMTGKKHSL---------ENGIARLRILVENGRILFHRGHQTTE--DFITSMQ 492 Query: 459 SFEADEG 465 S E +G Sbjct: 493 SLERRDG 499 >gi|27798|lcl|protein:vir:8408 Length: 214 # NCBI annotation: gp3 # Family: family:all:30874 # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818304;genbank:gi:29566740;genbank:GeneI D:1260058 Length = 214 Score = 24.6 bits (52), Expect = 3.0, Method: Compositional matrix adjust. Identities = 10/41 (24%), Positives = 21/41 (51%) Query: 56 FDMWDFQEELIESFHENRFNIAKLPRQTGKSTTCVSYLLHY 96 ++ Q+ + E+ ++ + PRQ GK+ ++Y L Y Sbjct: 1 MELLAHQKLIHETIDKSSISAFAAPRQNGKTYAALAYALQY 41 >gi|10294|lcl|protein:vir:105656 Length: 405 # NCBI annotation: putative large terminase subunit # Family: family:all:697 # MgeID: mge:1674 # MgeName: K1E # Cross-refs: genbank:acc:YP_425018;genbank:gi:83571766;uniprot:Q2WC34 ;genbank:GeneID:3837297 Length = 405 Score = 24.3 bits (51), Expect = 4.4, Method: Compositional matrix adjust. Identities = 9/52 (17%), Positives = 25/52 (48%) Query: 69 FHENRFNIAKLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLLG 120 F+ +++ + + PR K+T Y + I+ + + +++ A ++ G Sbjct: 62 FYGHKYRLIEAPRGIAKTTLSAIYTVFRIIHEPHKRIMVVSQNAKRAEEIAG 113 >gi|8927|lcl|protein:vir:97005 Length: 632 # NCBI annotation: 40 # Family: family:all:697 # MgeID: mge:1644 # MgeName: K1-5 # Cross-refs: genbank:acc:YP_654141;genbank:gi:108862025;genbank:GeneI D:5075954 Length = 632 Score = 24.3 bits (51), Expect = 4.6, Method: Compositional matrix adjust. Identities = 9/52 (17%), Positives = 25/52 (48%) Query: 69 FHENRFNIAKLPRQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLLG 120 F+ +++ + + PR K+T Y + I+ + + +++ A ++ G Sbjct: 62 FYGHKYRLIEAPRGIAKTTLSAIYTVFRIIHEPHKRIMVVSQNAKRAEEIAG 113 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.319 0.136 0.405 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 261,084 Number of Sequences: 514 Number of extensions: 12292 Number of successful extensions: 136 Number of sequences better than 100.0: 49 Number of HSP's better than 100.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 12 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 56 length of query: 560 length of database: 206,069 effective HSP length: 76 effective length of query: 484 effective length of database: 167,005 effective search space: 80830420 effective search space used: 80830420 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)