Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : ICP3 | Genbank acc : NC_015159

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 54

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	39	lcl\|NC_015159.1_cdsid_YP_004251282.1	HHsearch (proba=100.00%)
Portal	37	lcl\|NC_015159.1_cdsid_YP_004251280.1	HHsearch (proba=100.00%)
TermL	53	lcl\|NC_015159.1_cdsid_YP_004251296.1	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	40	lcl\|NC_015159.1_cdsid_YP_004251283.1	HHsearch (proba=100.00%)
Hc3	41	lcl\|NC_015159.1_cdsid_YP_004251284.1	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:99675 protein:vir:1541 protein:vir:3364	VP4 phiYeO3-12 T3	97 % 67 % 65 %
Portal	protein:vir:99672 protein:vir:94572 protein:vir:3361	VP4 Berlin T3	100 % 60 % 60 %
TermL	protein:vir:99686 protein:vir:94726 protein:vir:8897	VP4 K1F gh-1	99 % 70 % 69 %
Ad3	protein:vir:99676 protein:vir:3365 protein:vir:1542	VP4 T3 phiYeO3-12	98 % 62 % 62 %
Hc3	protein:vir:99677 protein:vir:94583 protein:vir:10452	VP4 Berlin phiA1122	98 % 54 % 53 %