Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 30 lcl|NC_013638.1_cdsid_YP_003345495.1 HHsearch (proba=100.00%)
Portal 28 lcl|NC_013638.1_cdsid_YP_003345493.1 HHsearch (proba=100.00%)
TermL 39 lcl|NC_013638.1_cdsid_YP_003345504.1 Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 31 lcl|NC_013638.1_cdsid_YP_003345496.1 HHsearch (proba=100.00%)
Hc3 32 lcl|NC_013638.1_cdsid_YP_003345497.1 HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:80213
protein:vir:78935
protein:vir:6324
LKA1
LKD16
phiKMV
60 %
56 %
56 %
Portal protein:vir:80211
protein:vir:78942
protein:vir:6322
LKA1
LKD16
phiKMV
52 %
48 %
48 %
TermL protein:vir:80218
protein:vir:78939
protein:vir:6335
LKA1
LKD16
phiKMV
61 %
59 %
59 %
Ad3 protein:vir:80215
protein:vir:78929
protein:vir:6325
LKA1
LKD16
phiKMV
41 %
40 %
39 %
Hc3 protein:vir:80253
protein:vir:78957
protein:vir:6326
LKA1
LKD16
phiKMV
44 %
40 %
40 %