Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 50 lcl|NC_013195.1_cdsid_YP_003169680.1 HHsearch (proba=100.00%)
Portal 48 lcl|NC_013195.1_cdsid_YP_003169678.1 HHsearch (proba=100.00%)
TermL 47 lcl|NC_013195.1_cdsid_YP_003169677.1 Blast (e-value=0)
MTP 56 lcl|NC_013195.1_cdsid_YP_003169686.1 Blast (e-value=1e-120)
Sheath NOT FOUND
Ad1 52 lcl|NC_013195.1_cdsid_YP_003169682.1 HHsearch (proba=100.00%)
Hc1 53 lcl|NC_013195.1_cdsid_YP_003169683.1 HHsearch (proba=100.00%)
Ne1 54 lcl|NC_013195.1_cdsid_YP_003169684.1 HHsearch (proba=100.00%)
Tc1 55 lcl|NC_013195.1_cdsid_YP_003169685.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:101291
protein:vir:100632
protein:vir:9509
phiNM3
77
phiN315
99 %
99 %
99 %
Portal protein:vir:101289
protein:vir:100650
protein:vir:9507
phiNM3
77
phiN315
98 %
98 %
98 %
TermL protein:vir:101288
protein:vir:100634
protein:vir:9506
phiNM3
77
phiN315
100 %
100 %
100 %
MTP protein:vir:100637
protein:vir:9515
protein:vir:101304
77
phiN315
phiNM3
97 %
97 %
95 %
Ad1 protein:vir:101300
protein:vir:100669
protein:vir:9511
phiNM3
77
phiN315
100 %
100 %
100 %
Hc1 protein:vir:101301
protein:vir:100673
protein:vir:9512
phiNM3
77
phiN315
100 %
100 %
100 %
Ne1 protein:vir:100652
protein:vir:101302
protein:vir:9513
77
phiNM3
phiN315
100 %
81 %
81 %
Tc1 protein:vir:101303
protein:vir:100675
protein:vir:9514
phiNM3
77
phiN315
100 %
100 %
100 %