Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 25 lcl|NC_011756.1_cdsid_YP_002418831.1 HHsearch (proba=100.00%)
Portal 19 lcl|NC_011756.1_cdsid_YP_002418825.1 HHsearch (proba=100.00%)
TermL 4 lcl|NC_011756.1_cdsid_YP_002418810.1 Blast (e-value=0)
MTP NOT FOUND
Sheath 31 lcl|NC_011756.1_cdsid_YP_002418837.1 HHsearch (proba=100.00%)
Ad1 27 lcl|NC_011756.1_cdsid_YP_002418833.1 HHsearch (proba=100.00%)
Hc1 28 lcl|NC_011756.1_cdsid_YP_002418834.1 HHsearch (proba=100.00%)
Ne1 30 lcl|NC_011756.1_cdsid_YP_002418836.1 HHsearch (proba=100.00%)
Tc1 29 lcl|NC_011756.1_cdsid_YP_002418835.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:96079
protein:vir:99576
protein:vir:107732
F8
BcepF1
BcepB1A
95 %
62 %
39 %
Portal protein:vir:96068
protein:vir:99563
protein:vir:107742
F8
BcepF1
BcepB1A
96 %
58 %
40 %
TermL protein:vir:96067
protein:vir:99572
protein:vir:96782
F8
BcepF1
phiHSIC
97 %
68 %
23 %
Sheath protein:vir:96104
protein:vir:99586
protein:vir:107720
F8
BcepF1
BcepB1A
97 %
59 %
34 %
Ad1 protein:vir:96108
protein:vir:99570
protein:vir:107756
F8
BcepF1
BcepB1A
96 %
54 %
48 %
Hc1 protein:vir:96107
protein:vir:99571
protein:vir:107716
F8
BcepF1
BcepB1A
85 %
47 %
34 %
Ne1 protein:vir:96105
protein:vir:99546
protein:vir:78607
F8
BcepF1
BcepNY3
100 %
56 %
33 %
Tc1 protein:vir:96106
protein:vir:99607
protein:vir:107715
F8
BcepF1
BcepB1A
91 %
39 %
21 %