Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : LMA2 | Genbank acc : NC_011166

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 94

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	26	lcl\|NC_011166.1_cdsid_YP_002154257.1	HHsearch (proba=100.00%)
Portal	20	lcl\|NC_011166.1_cdsid_YP_002154251.1	HHsearch (proba=100.00%)
TermL	4	lcl\|NC_011166.1_cdsid_YP_002154236.1	Blast (e-value=0)
MTP	NOT FOUND
Sheath	32	lcl\|NC_011166.1_cdsid_YP_002154263.1	HHsearch (proba=100.00%)
Ad1	28	lcl\|NC_011166.1_cdsid_YP_002154259.1	HHsearch (proba=100.00%)
Hc1	29	lcl\|NC_011166.1_cdsid_YP_002154260.1	HHsearch (proba=100.00%)
Ne1	31	lcl\|NC_011166.1_cdsid_YP_002154262.1	HHsearch (proba=100.00%)
Tc1	30	lcl\|NC_011166.1_cdsid_YP_002154261.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:96079 protein:vir:99576 protein:vir:107732	F8 BcepF1 BcepB1A	95 % 62 % 40 %
Portal	protein:vir:96068 protein:vir:99563 protein:vir:107742	F8 BcepF1 BcepB1A	96 % 57 % 41 %
TermL	protein:vir:96067 protein:vir:99572 protein:vir:96782	F8 BcepF1 phiHSIC	97 % 67 % 21 %
Sheath	protein:vir:96104 protein:vir:99586 protein:vir:107720	F8 BcepF1 BcepB1A	97 % 59 % 33 %
Ad1	protein:vir:96108 protein:vir:99570 protein:vir:107756	F8 BcepF1 BcepB1A	96 % 54 % 48 %
Hc1	protein:vir:96107 protein:vir:99571 protein:vir:107716	F8 BcepF1 BcepB1A	84 % 46 % 34 %
Ne1	protein:vir:96105 protein:vir:99546 protein:vir:78607	F8 BcepF1 BcepNY3	100 % 56 % 33 %
Tc1	protein:vir:96106 protein:vir:99607 protein:vir:107715	F8 BcepF1 BcepB1A	91 % 38 % 21 %